Query 009721
Match_columns 527
No_of_seqs 616 out of 3488
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 1.3E-50 2.7E-55 416.4 37.3 346 75-424 12-361 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 7.4E-44 1.6E-48 336.3 24.9 289 125-419 2-298 (300)
3 PRK13232 nifH nitrogenase redu 100.0 5.1E-32 1.1E-36 269.8 22.1 232 173-415 1-247 (273)
4 TIGR01969 minD_arch cell divis 100.0 7.5E-32 1.6E-36 265.2 22.7 227 174-416 1-234 (251)
5 CHL00175 minD septum-site dete 100.0 8.9E-32 1.9E-36 269.3 23.3 237 168-415 10-255 (281)
6 COG2894 MinD Septum formation 100.0 6.8E-32 1.5E-36 246.4 15.5 231 172-414 1-247 (272)
7 PRK13235 nifH nitrogenase redu 100.0 4.6E-31 1E-35 263.1 22.7 234 173-415 1-249 (274)
8 PRK13236 nitrogenase reductase 100.0 1.8E-31 3.8E-36 268.3 19.8 245 172-430 5-265 (296)
9 PRK13233 nifH nitrogenase redu 100.0 3.9E-31 8.6E-36 263.8 20.3 229 172-415 1-250 (275)
10 TIGR03371 cellulose_yhjQ cellu 100.0 2.4E-31 5.2E-36 260.9 18.1 234 173-416 1-245 (246)
11 PRK10818 cell division inhibit 100.0 3.4E-30 7.3E-35 256.5 21.5 231 172-414 1-248 (270)
12 cd02040 NifH NifH gene encodes 100.0 3.3E-30 7.3E-35 256.4 20.7 234 173-418 1-251 (270)
13 COG0455 flhG Antiactivator of 100.0 5.7E-30 1.2E-34 249.9 21.0 232 172-416 1-242 (262)
14 CHL00072 chlL photochlorophyll 100.0 1.2E-29 2.7E-34 253.7 23.9 224 176-416 3-247 (290)
15 TIGR01968 minD_bact septum sit 100.0 7.6E-30 1.6E-34 252.4 21.2 229 173-414 1-238 (261)
16 PRK13234 nifH nitrogenase redu 100.0 4.1E-30 8.9E-35 258.2 19.3 233 172-416 3-252 (295)
17 PRK13230 nitrogenase reductase 100.0 9.8E-30 2.1E-34 254.2 21.0 232 173-415 1-248 (279)
18 PRK13185 chlL protochlorophyll 100.0 1.2E-29 2.5E-34 252.6 21.2 229 172-417 1-250 (270)
19 PRK10037 cell division protein 100.0 1.2E-29 2.6E-34 249.5 17.7 229 173-421 1-244 (250)
20 COG0489 Mrp ATPases involved i 100.0 2.9E-29 6.2E-34 247.1 20.0 205 170-384 54-263 (265)
21 PRK13869 plasmid-partitioning 100.0 6.9E-30 1.5E-34 266.5 16.5 239 171-419 119-394 (405)
22 PRK13231 nitrogenase reductase 100.0 2.5E-29 5.3E-34 249.4 19.5 234 172-416 1-242 (264)
23 TIGR01287 nifH nitrogenase iro 100.0 5.1E-29 1.1E-33 248.6 21.4 231 174-416 1-248 (275)
24 TIGR01281 DPOR_bchL light-inde 100.0 4.2E-29 9.2E-34 248.3 19.5 227 174-417 1-248 (268)
25 cd02032 Bchl_like This family 100.0 1.7E-28 3.8E-33 243.7 20.6 225 174-415 1-246 (267)
26 cd02037 MRP-like MRP (Multiple 100.0 4.9E-28 1.1E-32 223.8 19.1 167 175-380 1-169 (169)
27 COG1192 Soj ATPases involved i 100.0 1.9E-28 4.2E-33 242.3 15.8 238 172-419 1-257 (259)
28 PF06564 YhjQ: YhjQ protein; 100.0 3.6E-28 7.8E-33 232.7 17.1 229 173-418 1-241 (243)
29 TIGR03453 partition_RepA plasm 100.0 3.7E-28 8E-33 253.5 18.7 238 171-418 102-376 (387)
30 PHA02518 ParA-like protein; Pr 100.0 5.3E-28 1.2E-32 231.5 17.9 204 174-417 1-210 (211)
31 PRK13705 plasmid-partitioning 100.0 9.4E-28 2E-32 248.9 17.2 237 171-416 104-380 (388)
32 PHA02519 plasmid partition pro 99.9 3.2E-27 7E-32 244.3 17.8 235 171-414 104-378 (387)
33 cd02036 MinD Bacterial cell di 99.9 8.9E-27 1.9E-31 217.0 18.0 179 175-405 1-179 (179)
34 TIGR03815 CpaE_hom_Actino heli 99.9 1.9E-26 4.2E-31 235.1 21.5 219 170-410 90-320 (322)
35 cd02117 NifH_like This family 99.9 2.5E-26 5.4E-31 220.3 18.9 193 174-379 1-212 (212)
36 cd02033 BchX Chlorophyllide re 99.9 2.9E-25 6.2E-30 223.6 24.1 235 171-430 29-286 (329)
37 TIGR02016 BchX chlorophyllide 99.9 1.7E-25 3.7E-30 224.3 21.5 231 174-418 1-254 (296)
38 COG1149 MinD superfamily P-loo 99.9 1.5E-24 3.2E-29 206.0 20.5 225 173-414 1-282 (284)
39 PF06155 DUF971: Protein of un 99.9 2.8E-26 6.1E-31 188.0 7.6 88 425-513 1-89 (89)
40 COG3640 CooC CO dehydrogenase 99.9 1.8E-23 3.9E-28 194.4 20.4 219 175-414 2-252 (255)
41 PRK13849 putative crown gall t 99.9 5.2E-24 1.1E-28 205.9 16.5 205 173-412 1-215 (231)
42 cd03110 Fer4_NifH_child This p 99.9 8.5E-24 1.8E-28 197.3 16.3 178 175-377 1-179 (179)
43 TIGR01007 eps_fam capsular exo 99.9 1.4E-23 3E-28 200.1 16.1 170 173-348 17-194 (204)
44 TIGR03018 pepcterm_TyrKin exop 99.9 1.6E-23 3.4E-28 200.1 15.9 164 171-342 33-207 (207)
45 COG1348 NifH Nitrogenase subun 99.9 2E-22 4.3E-27 186.1 19.0 240 173-426 1-257 (278)
46 TIGR03029 EpsG chain length de 99.9 7.8E-23 1.7E-27 204.0 16.5 165 172-343 102-274 (274)
47 PF00142 Fer4_NifH: 4Fe-4S iro 99.9 1.8E-22 3.9E-27 192.7 16.4 241 174-428 1-258 (273)
48 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 1.9E-22 4E-27 190.4 10.8 190 176-384 1-195 (195)
49 TIGR01005 eps_transp_fam exopo 99.8 5E-21 1.1E-25 216.5 14.8 172 171-348 544-722 (754)
50 COG3536 Uncharacterized protei 99.8 2.1E-21 4.5E-26 156.1 8.3 93 422-517 3-96 (120)
51 cd00550 ArsA_ATPase Oxyanion-t 99.8 4E-21 8.7E-26 189.0 9.0 203 176-380 2-240 (254)
52 cd03111 CpaE_like This protein 99.8 7.6E-20 1.6E-24 155.4 12.8 102 175-343 1-106 (106)
53 PRK11519 tyrosine kinase; Prov 99.8 1.1E-19 2.5E-24 203.3 17.4 168 172-345 525-699 (719)
54 PRK09841 cryptic autophosphory 99.8 1.2E-19 2.6E-24 203.4 17.4 169 172-346 530-705 (726)
55 cd02038 FleN-like FleN is a me 99.8 1.6E-19 3.5E-24 161.3 13.4 108 175-346 1-109 (139)
56 COG4963 CpaE Flp pilus assembl 99.8 1.5E-18 3.1E-23 173.5 17.8 229 171-415 102-344 (366)
57 cd02035 ArsA ArsA ATPase funct 99.8 2.9E-19 6.3E-24 171.9 10.3 163 176-347 1-183 (217)
58 PF07015 VirC1: VirC1 protein; 99.8 2.3E-18 5E-23 162.6 14.9 145 173-346 1-152 (231)
59 cd02042 ParA ParA and ParB of 99.8 4.8E-18 1E-22 143.9 12.6 99 175-342 1-104 (104)
60 PF09140 MipZ: ATPase MipZ; I 99.8 1.4E-19 3.1E-24 171.1 3.4 209 174-396 1-232 (261)
61 COG2151 PaaD Predicted metal-s 99.8 1.8E-18 4E-23 144.5 9.0 88 71-158 8-95 (111)
62 PF02374 ArsA_ATPase: Anion-tr 99.8 6.5E-18 1.4E-22 169.9 13.8 197 173-379 1-286 (305)
63 COG0003 ArsA Predicted ATPase 99.7 2.6E-16 5.7E-21 157.8 14.6 205 175-380 3-286 (322)
64 PF13614 AAA_31: AAA domain; P 99.7 4.5E-17 9.8E-22 148.3 7.6 141 174-320 1-156 (157)
65 TIGR02409 carnitine_bodg gamma 99.6 1.6E-16 3.4E-21 164.7 6.6 80 436-516 2-82 (366)
66 COG0541 Ffh Signal recognition 99.6 4.3E-16 9.4E-21 157.6 9.1 244 73-375 20-272 (451)
67 PRK10867 signal recognition pa 99.6 3.1E-15 6.8E-20 156.0 11.7 244 73-375 20-273 (433)
68 TIGR00959 ffh signal recogniti 99.6 8.4E-15 1.8E-19 152.8 9.9 244 73-375 19-272 (428)
69 TIGR01425 SRP54_euk signal rec 99.5 1.5E-14 3.2E-19 150.0 10.5 243 73-374 20-271 (429)
70 TIGR00064 ftsY signal recognit 99.5 3.4E-13 7.4E-18 133.6 16.3 167 173-375 72-250 (272)
71 TIGR02410 carnitine_TMLD trime 99.5 1.6E-14 3.4E-19 149.4 4.8 66 449-515 2-70 (362)
72 PF01883 DUF59: Domain of unkn 99.5 1.3E-13 2.7E-18 108.5 8.4 72 77-150 1-72 (72)
73 PRK00771 signal recognition pa 99.5 1.6E-13 3.5E-18 143.6 11.8 241 73-375 16-265 (437)
74 cd03114 ArgK-like The function 99.5 1.3E-12 2.9E-17 117.6 15.1 143 176-344 2-147 (148)
75 PF10609 ParA: ParA/MinD ATPas 99.5 1.8E-13 4E-18 107.7 7.7 77 282-358 2-80 (81)
76 KOG2825 Putative arsenite-tran 99.5 2.1E-13 4.6E-18 127.8 9.2 206 173-380 18-305 (323)
77 TIGR03406 FeS_long_SufT probab 99.5 4.5E-13 9.7E-18 122.3 11.0 87 72-158 70-159 (174)
78 cd03115 SRP The signal recogni 99.4 1.2E-11 2.7E-16 114.5 15.6 164 175-374 2-171 (173)
79 KOG3888 Gamma-butyrobetaine,2- 99.4 2.5E-13 5.4E-18 132.7 3.8 83 432-515 24-107 (407)
80 PRK10416 signal recognition pa 99.4 3.4E-11 7.3E-16 121.8 18.2 167 173-375 114-292 (318)
81 cd02034 CooC The accessory pro 99.3 3.5E-12 7.6E-17 109.8 9.0 111 176-311 2-115 (116)
82 PRK13886 conjugal transfer pro 99.3 4.2E-11 9.2E-16 115.2 14.6 48 172-219 1-48 (241)
83 cd01983 Fer4_NifH The Fer4_Nif 99.3 2.6E-11 5.6E-16 100.3 11.6 93 178-342 3-99 (99)
84 PRK11889 flhF flagellar biosyn 99.2 2.3E-10 4.9E-15 116.5 15.2 163 173-375 241-410 (436)
85 KOG3889 Predicted gamma-butyro 99.2 8.8E-12 1.9E-16 117.6 4.0 71 444-515 15-85 (371)
86 TIGR00347 bioD dethiobiotin sy 99.2 2.3E-10 4.9E-15 105.3 13.3 152 178-342 2-166 (166)
87 PRK00090 bioD dithiobiotin syn 99.2 2.3E-10 5.1E-15 110.4 12.7 193 176-378 2-201 (222)
88 TIGR02945 SUF_assoc FeS assemb 99.2 2E-10 4.3E-15 96.2 10.3 81 77-158 3-83 (99)
89 PRK13768 GTPase; Provisional 99.2 2.5E-10 5.5E-15 112.2 12.2 45 172-217 1-45 (253)
90 TIGR00345 arsA arsenite-activa 99.1 9E-10 1.9E-14 110.2 13.4 74 306-379 190-267 (284)
91 PRK14974 cell division protein 99.1 1.5E-09 3.3E-14 110.2 14.7 246 75-375 58-312 (336)
92 PRK12726 flagellar biosynthesi 99.1 1.7E-09 3.6E-14 109.9 14.6 164 173-375 206-375 (407)
93 TIGR02159 PA_CoA_Oxy4 phenylac 99.1 3.9E-10 8.4E-15 100.2 8.7 69 87-158 1-70 (146)
94 PRK12724 flagellar biosynthesi 99.1 2E-09 4.4E-14 111.0 14.4 159 174-375 224-392 (432)
95 PF00448 SRP54: SRP54-type pro 99.0 3.6E-09 7.9E-14 99.8 12.9 166 173-374 1-172 (196)
96 PRK05703 flhF flagellar biosyn 99.0 1.7E-09 3.7E-14 113.7 11.6 160 173-374 221-389 (424)
97 cd03109 DTBS Dethiobiotin synt 99.0 1.2E-08 2.7E-13 90.3 15.0 125 178-377 4-134 (134)
98 PRK01077 cobyrinic acid a,c-di 99.0 7.8E-09 1.7E-13 110.2 16.1 203 172-415 2-216 (451)
99 PRK12727 flagellar biosynthesi 99.0 7.3E-09 1.6E-13 109.4 13.9 159 172-374 349-516 (559)
100 KOG0780 Signal recognition par 98.9 2.9E-09 6.2E-14 106.1 7.0 225 75-350 23-256 (483)
101 COG0552 FtsY Signal recognitio 98.9 5.8E-09 1.2E-13 103.3 8.7 168 172-375 138-317 (340)
102 TIGR00750 lao LAO/AO transport 98.9 5.2E-08 1.1E-12 98.4 15.8 152 172-347 33-185 (300)
103 PRK12723 flagellar biosynthesi 98.9 3.8E-08 8.2E-13 101.9 15.0 160 173-374 174-344 (388)
104 PRK14493 putative bifunctional 98.8 4.1E-08 9E-13 97.2 13.0 136 173-332 1-137 (274)
105 PRK12374 putative dithiobiotin 98.8 1.4E-07 3E-12 91.7 16.3 190 172-380 1-204 (231)
106 PF13500 AAA_26: AAA domain; P 98.8 4.3E-08 9.4E-13 92.9 10.9 188 174-383 1-196 (199)
107 PRK13505 formate--tetrahydrofo 98.8 2.6E-07 5.7E-12 97.4 17.4 89 318-413 357-457 (557)
108 PRK05632 phosphate acetyltrans 98.7 1.6E-07 3.4E-12 105.2 15.1 178 172-383 1-200 (684)
109 PRK14723 flhF flagellar biosyn 98.7 1E-07 2.2E-12 105.3 12.6 163 173-375 185-356 (767)
110 TIGR00313 cobQ cobyric acid sy 98.7 2.3E-07 4.9E-12 99.4 14.8 197 176-380 1-225 (475)
111 COG0132 BioD Dethiobiotin synt 98.7 7.9E-07 1.7E-11 84.7 15.7 200 172-382 1-207 (223)
112 PRK06731 flhF flagellar biosyn 98.7 2E-07 4.4E-12 91.9 12.1 163 173-375 75-244 (270)
113 PRK09435 membrane ATPase/prote 98.6 6.8E-07 1.5E-11 90.7 14.9 151 171-347 54-207 (332)
114 PRK14722 flhF flagellar biosyn 98.6 6.8E-07 1.5E-11 91.9 14.5 163 173-375 137-314 (374)
115 PRK00784 cobyric acid synthase 98.6 8E-07 1.7E-11 95.7 15.2 194 172-381 1-229 (488)
116 TIGR03499 FlhF flagellar biosy 98.6 6.6E-08 1.4E-12 96.7 5.5 42 173-215 194-237 (282)
117 COG1703 ArgK Putative periplas 98.6 1.8E-06 3.8E-11 84.4 14.7 150 170-345 48-200 (323)
118 PRK06995 flhF flagellar biosyn 98.5 7.5E-07 1.6E-11 94.4 12.4 161 173-375 256-424 (484)
119 TIGR00379 cobB cobyrinic acid 98.5 3.5E-06 7.6E-11 89.8 15.4 197 176-414 2-212 (449)
120 PF03308 ArgK: ArgK protein; 98.3 2E-06 4.3E-11 83.0 9.1 149 172-345 28-178 (266)
121 KOG0781 Signal recognition par 98.3 4.5E-06 9.7E-11 85.8 10.0 155 171-345 376-541 (587)
122 COG1797 CobB Cobyrinic acid a, 98.2 2.4E-05 5.3E-10 80.3 14.6 168 175-383 2-183 (451)
123 COG1419 FlhF Flagellar GTP-bin 98.2 1.5E-05 3.3E-10 81.6 12.5 160 173-374 203-370 (407)
124 PRK06278 cobyrinic acid a,c-di 97.9 0.00031 6.8E-09 74.8 16.2 168 170-377 235-418 (476)
125 PRK13896 cobyrinic acid a,c-di 97.8 0.00019 4.1E-09 75.6 13.0 169 173-382 1-178 (433)
126 cd04170 EF-G_bact Elongation f 97.8 0.00019 4E-09 71.4 11.4 97 277-380 60-157 (268)
127 PRK14721 flhF flagellar biosyn 97.7 0.00069 1.5E-08 71.0 15.0 160 173-375 191-359 (420)
128 cd04168 TetM_like Tet(M)-like 97.7 0.00058 1.2E-08 66.6 13.4 93 278-377 61-154 (237)
129 cd01886 EF-G Elongation factor 97.7 0.0029 6.2E-08 62.9 17.4 97 277-380 60-157 (270)
130 KOG1532 GTPase XAB1, interacts 97.6 0.00054 1.2E-08 66.2 10.1 45 174-219 20-64 (366)
131 cd00477 FTHFS Formyltetrahydro 97.5 0.0002 4.3E-09 75.2 6.6 51 172-225 37-90 (524)
132 cd04169 RF3 RF3 subfamily. Pe 97.4 0.0018 3.8E-08 64.3 12.6 95 278-379 68-163 (267)
133 COG1763 MobB Molybdopterin-gua 97.4 0.0012 2.5E-08 60.0 10.1 42 172-214 1-42 (161)
134 PRK14494 putative molybdopteri 97.4 0.00062 1.4E-08 65.5 8.7 38 173-211 1-38 (229)
135 TIGR00176 mobB molybdopterin-g 97.4 0.00063 1.4E-08 61.7 7.7 38 175-213 1-38 (155)
136 PRK13506 formate--tetrahydrofo 97.4 0.00034 7.3E-09 74.2 6.5 50 172-224 53-105 (578)
137 COG1341 Predicted GTPase or GT 97.3 0.0016 3.6E-08 66.6 10.8 41 175-216 75-115 (398)
138 cd04167 Snu114p Snu114p subfam 97.2 0.0023 5E-08 61.2 10.2 67 279-346 69-135 (213)
139 cd01884 EF_Tu EF-Tu subfamily. 97.2 0.0026 5.6E-08 60.1 9.7 69 278-346 62-130 (195)
140 TIGR02237 recomb_radB DNA repa 97.1 0.00098 2.1E-08 63.5 6.6 38 174-212 13-50 (209)
141 PRK14495 putative molybdopteri 97.1 0.0025 5.5E-08 66.4 9.6 39 173-212 1-39 (452)
142 PF03205 MobB: Molybdopterin g 97.1 0.0015 3.1E-08 58.3 6.5 42 174-216 1-43 (140)
143 COG1618 Predicted nucleotide k 97.0 0.0052 1.1E-07 55.1 9.7 39 171-210 3-41 (179)
144 KOG1533 Predicted GTPase [Gene 97.0 0.0014 3E-08 62.1 6.3 39 181-219 9-47 (290)
145 COG0529 CysC Adenylylsulfate k 97.0 0.001 2.3E-08 60.4 5.1 51 172-223 22-72 (197)
146 cd01120 RecA-like_NTPases RecA 97.0 0.0018 3.8E-08 58.3 6.8 38 178-215 3-40 (165)
147 PF03029 ATP_bind_1: Conserved 97.0 0.00014 3.1E-09 70.7 -0.5 37 181-217 3-39 (238)
148 COG1492 CobQ Cobyric acid synt 97.0 0.0025 5.5E-08 66.9 8.4 197 175-381 3-229 (486)
149 PRK04296 thymidine kinase; Pro 96.9 0.0073 1.6E-07 56.7 10.6 35 173-208 2-36 (190)
150 cd04166 CysN_ATPS CysN_ATPS su 96.9 0.0083 1.8E-07 57.1 10.4 70 278-347 74-143 (208)
151 PF00009 GTP_EFTU: Elongation 96.9 0.0097 2.1E-07 55.6 10.7 68 278-346 67-134 (188)
152 cd00881 GTP_translation_factor 96.9 0.006 1.3E-07 56.4 9.2 68 279-347 60-127 (189)
153 PRK12740 elongation factor G; 96.8 0.0072 1.6E-07 68.1 11.3 94 278-378 57-151 (668)
154 PF01583 APS_kinase: Adenylyls 96.8 0.0017 3.7E-08 58.6 5.1 43 174-217 3-45 (156)
155 COG0857 Pta BioD-like N-termin 96.8 0.011 2.3E-07 60.7 11.3 190 172-382 1-206 (354)
156 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0062 1.4E-07 55.2 8.4 35 175-210 4-38 (159)
157 PRK00889 adenylylsulfate kinas 96.8 0.0023 4.9E-08 59.2 5.7 41 173-214 4-44 (175)
158 cd04163 Era Era subfamily. Er 96.8 0.017 3.7E-07 51.6 11.3 67 279-346 49-123 (168)
159 cd01394 radB RadB. The archaea 96.7 0.0023 5.1E-08 61.3 5.4 38 176-213 21-58 (218)
160 TIGR00490 aEF-2 translation el 96.7 0.0052 1.1E-07 69.6 8.8 68 278-346 83-150 (720)
161 TIGR02012 tigrfam_recA protein 96.7 0.0033 7.2E-08 63.7 6.3 38 174-212 56-93 (321)
162 PRK00741 prfC peptide chain re 96.7 0.026 5.7E-07 61.4 13.6 94 278-378 76-170 (526)
163 cd03116 MobB Molybdenum is an 96.7 0.0037 8.1E-08 56.9 6.0 41 173-214 1-41 (159)
164 PRK00089 era GTPase Era; Revie 96.6 0.038 8.3E-07 55.5 13.8 68 279-347 51-126 (292)
165 PRK07667 uridine kinase; Provi 96.6 0.0039 8.4E-08 58.7 6.1 39 174-213 18-56 (193)
166 PRK10751 molybdopterin-guanine 96.6 0.0091 2E-07 55.0 8.2 42 172-214 5-46 (173)
167 cd04165 GTPBP1_like GTPBP1-lik 96.6 0.031 6.7E-07 54.0 12.2 67 279-346 82-150 (224)
168 TIGR01618 phage_P_loop phage n 96.5 0.0073 1.6E-07 57.9 7.4 32 173-212 12-43 (220)
169 cd01125 repA Hexameric Replica 96.5 0.0033 7.1E-08 61.3 5.1 39 176-214 3-53 (239)
170 TIGR00708 cobA cob(I)alamin ad 96.5 0.014 3E-07 53.7 8.7 35 176-211 8-42 (173)
171 TIGR00503 prfC peptide chain r 96.5 0.024 5.2E-07 61.7 12.0 87 278-371 77-163 (527)
172 PRK12739 elongation factor G; 96.5 0.031 6.8E-07 63.1 13.3 96 277-379 69-165 (691)
173 PRK09361 radB DNA repair and r 96.5 0.0051 1.1E-07 59.3 6.0 37 174-211 24-60 (225)
174 PRK00007 elongation factor G; 96.5 0.032 6.9E-07 63.1 13.1 95 278-379 72-167 (693)
175 COG1066 Sms Predicted ATP-depe 96.4 0.0036 7.8E-08 64.2 4.6 36 176-212 95-130 (456)
176 cd00983 recA RecA is a bacter 96.4 0.0063 1.4E-07 61.7 6.3 38 174-212 56-93 (325)
177 PRK03846 adenylylsulfate kinas 96.4 0.0054 1.2E-07 58.0 5.5 43 171-214 22-64 (198)
178 PRK00652 lpxK tetraacyldisacch 96.4 0.017 3.8E-07 58.7 9.3 41 174-214 50-91 (325)
179 smart00382 AAA ATPases associa 96.4 0.0072 1.6E-07 52.2 5.8 39 175-214 4-42 (148)
180 PRK05973 replicative DNA helic 96.4 0.0052 1.1E-07 59.6 5.2 39 175-213 65-103 (237)
181 PLN02974 adenosylmethionine-8- 96.4 0.14 3E-06 58.6 17.4 64 279-343 183-252 (817)
182 cd01887 IF2_eIF5B IF2/eIF5B (i 96.3 0.042 9.1E-07 49.7 10.9 67 279-346 48-114 (168)
183 PRK00049 elongation factor Tu; 96.3 0.03 6.5E-07 58.9 11.1 68 279-346 73-140 (396)
184 PRK07952 DNA replication prote 96.3 0.005 1.1E-07 60.1 4.8 34 177-210 102-135 (244)
185 cd01124 KaiC KaiC is a circadi 96.2 0.0059 1.3E-07 56.7 4.9 37 177-213 2-38 (187)
186 PRK00093 GTP-binding protein D 96.2 0.047 1E-06 58.2 12.4 67 279-346 47-121 (435)
187 cd01894 EngA1 EngA1 subfamily. 96.2 0.05 1.1E-06 48.4 10.7 67 279-346 43-117 (157)
188 COG0050 TufB GTPases - transla 96.2 0.017 3.8E-07 56.5 7.9 92 279-371 73-164 (394)
189 KOG1534 Putative transcription 96.2 0.0059 1.3E-07 56.9 4.3 45 172-216 1-45 (273)
190 PRK06696 uridine kinase; Valid 96.2 0.0088 1.9E-07 57.7 5.7 40 174-214 23-62 (223)
191 PF13479 AAA_24: AAA domain 96.1 0.019 4.2E-07 54.9 8.0 30 175-213 5-34 (213)
192 cd01393 recA_like RecA is a b 96.1 0.011 2.5E-07 56.8 6.4 38 174-212 20-63 (226)
193 PRK10218 GTP-binding protein; 96.1 0.087 1.9E-06 58.3 14.0 84 278-368 65-148 (607)
194 PRK13351 elongation factor G; 96.1 0.041 8.8E-07 62.2 11.7 95 278-379 70-165 (687)
195 TIGR01394 TypA_BipA GTP-bindin 96.1 0.031 6.7E-07 61.7 10.4 68 278-346 61-128 (594)
196 cd01121 Sms Sms (bacterial rad 96.1 0.0091 2E-07 62.0 5.8 37 176-212 84-120 (372)
197 cd02028 UMPK_like Uridine mono 96.1 0.008 1.7E-07 55.9 4.7 38 176-214 2-39 (179)
198 TIGR00484 EF-G translation elo 96.1 0.19 4E-06 56.9 16.6 95 278-379 72-167 (689)
199 TIGR00682 lpxK tetraacyldisacc 96.1 0.028 6E-07 56.9 8.9 39 174-212 29-68 (311)
200 PRK06067 flagellar accessory p 96.1 0.014 3E-07 56.7 6.6 38 174-212 26-63 (234)
201 PRK06762 hypothetical protein; 96.0 0.0081 1.8E-07 54.9 4.6 39 172-214 1-39 (166)
202 cd03113 CTGs CTP synthetase (C 96.0 0.06 1.3E-06 51.8 10.4 186 182-378 10-237 (255)
203 PHA02542 41 41 helicase; Provi 96.0 0.0082 1.8E-07 64.3 5.2 41 175-215 191-231 (473)
204 cd04171 SelB SelB subfamily. 96.0 0.033 7.1E-07 50.0 8.5 67 280-346 50-116 (164)
205 PRK14489 putative bifunctional 96.0 0.021 4.5E-07 59.5 7.9 42 172-214 204-245 (366)
206 PRK14491 putative bifunctional 96.0 0.022 4.9E-07 62.9 8.6 42 172-214 9-50 (597)
207 COG3367 Uncharacterized conser 96.0 0.12 2.6E-06 51.6 12.5 167 173-380 148-328 (339)
208 cd01891 TypA_BipA TypA (tyrosi 96.0 0.095 2.1E-06 49.1 11.8 67 279-346 63-129 (194)
209 PRK05986 cob(I)alamin adenolsy 95.9 0.035 7.7E-07 51.8 8.4 36 175-211 24-59 (191)
210 PF13481 AAA_25: AAA domain; P 95.9 0.0098 2.1E-07 55.6 4.7 39 176-214 34-82 (193)
211 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.012 2.6E-07 57.0 5.3 39 174-213 20-64 (235)
212 TIGR02655 circ_KaiC circadian 95.9 0.015 3.2E-07 62.9 6.5 39 175-213 264-302 (484)
213 cd03112 CobW_like The function 95.8 0.16 3.5E-06 46.1 12.2 34 177-212 3-36 (158)
214 cd04127 Rab27A Rab27a subfamil 95.8 0.3 6.5E-06 44.7 14.3 87 280-370 62-152 (180)
215 PRK09354 recA recombinase A; P 95.8 0.019 4.1E-07 58.8 6.6 38 174-212 61-98 (349)
216 cd02027 APSK Adenosine 5'-phos 95.8 0.011 2.3E-07 53.2 4.3 37 178-214 3-39 (149)
217 PF13207 AAA_17: AAA domain; P 95.8 0.011 2.3E-07 50.8 4.2 30 176-209 2-31 (121)
218 COG3598 RepA RecA-family ATPas 95.8 0.0084 1.8E-07 59.5 3.8 43 175-217 90-142 (402)
219 PLN03127 Elongation factor Tu; 95.8 0.11 2.5E-06 55.3 12.7 68 279-346 122-189 (447)
220 TIGR02034 CysN sulfate adenyly 95.8 0.034 7.4E-07 58.7 8.5 69 278-346 77-145 (406)
221 TIGR03574 selen_PSTK L-seryl-t 95.7 0.011 2.3E-07 58.1 4.4 36 178-213 3-38 (249)
222 cd01885 EF2 EF2 (for archaea a 95.7 0.082 1.8E-06 50.9 10.1 66 279-345 71-136 (222)
223 cd01122 GP4d_helicase GP4d_hel 95.7 0.014 3.1E-07 57.8 5.1 37 176-212 32-69 (271)
224 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.031 6.8E-07 54.4 7.3 39 174-213 22-60 (237)
225 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.017 3.6E-07 57.2 5.4 38 175-212 37-74 (259)
226 COG1160 Predicted GTPases [Gen 95.7 0.13 2.8E-06 53.8 12.0 69 278-347 48-125 (444)
227 PF13245 AAA_19: Part of AAA d 95.6 0.022 4.8E-07 45.0 4.8 36 176-211 12-51 (76)
228 cd01883 EF1_alpha Eukaryotic e 95.6 0.029 6.3E-07 53.9 6.7 70 278-347 74-150 (219)
229 PRK15453 phosphoribulokinase; 95.6 0.022 4.8E-07 56.3 5.8 42 173-215 5-46 (290)
230 cd02029 PRK_like Phosphoribulo 95.6 0.019 4.1E-07 56.4 5.2 40 175-215 1-40 (277)
231 PRK05480 uridine/cytidine kina 95.6 0.024 5.2E-07 53.9 5.9 39 173-214 6-44 (209)
232 PTZ00141 elongation factor 1- 95.6 0.027 5.8E-07 60.2 6.8 68 278-345 82-156 (446)
233 PF06745 KaiC: KaiC; InterPro 95.5 0.017 3.7E-07 55.7 4.9 38 175-213 21-59 (226)
234 TIGR00436 era GTP-binding prot 95.5 0.11 2.5E-06 51.5 10.9 66 279-346 46-119 (270)
235 PHA00729 NTP-binding motif con 95.5 0.018 3.9E-07 55.2 4.8 24 175-199 19-42 (226)
236 cd01889 SelB_euk SelB subfamil 95.5 0.06 1.3E-06 50.3 8.4 66 279-346 66-132 (192)
237 PLN03126 Elongation factor Tu; 95.5 0.088 1.9E-06 56.6 10.6 68 279-346 142-209 (478)
238 TIGR00455 apsK adenylylsulfate 95.5 0.024 5.1E-07 52.8 5.4 43 171-214 16-58 (184)
239 cd00984 DnaB_C DnaB helicase C 95.4 0.02 4.4E-07 55.6 5.1 38 176-213 15-53 (242)
240 TIGR03575 selen_PSTK_euk L-ser 95.4 0.016 3.5E-07 59.2 4.4 39 176-214 1-40 (340)
241 PRK07414 cob(I)yrinic acid a,c 95.4 0.13 2.8E-06 47.5 9.6 39 171-211 20-58 (178)
242 PRK01906 tetraacyldisaccharide 95.4 0.083 1.8E-06 54.1 9.3 41 174-214 57-98 (338)
243 CHL00071 tufA elongation facto 95.4 0.15 3.2E-06 54.0 11.5 68 279-346 73-140 (409)
244 PF07755 DUF1611: Protein of u 95.3 0.12 2.6E-06 51.7 10.1 164 172-375 111-292 (301)
245 TIGR00485 EF-Tu translation el 95.3 0.14 3.1E-06 53.8 11.3 68 279-346 73-140 (394)
246 PRK15494 era GTPase Era; Provi 95.2 0.19 4.1E-06 51.7 11.6 66 279-346 98-172 (339)
247 cd01890 LepA LepA subfamily. 95.2 0.2 4.3E-06 45.8 10.7 66 279-346 65-131 (179)
248 cd04125 RabA_like RabA-like su 95.2 1 2.2E-05 41.7 15.6 67 280-346 48-117 (188)
249 COG4088 Predicted nucleotide k 95.2 0.018 4E-07 53.7 3.5 37 177-213 4-40 (261)
250 cd04124 RabL2 RabL2 subfamily. 95.2 0.57 1.2E-05 42.2 13.5 67 279-346 47-116 (161)
251 PRK12736 elongation factor Tu; 95.2 0.11 2.4E-06 54.6 9.9 68 279-346 73-140 (394)
252 PF03796 DnaB_C: DnaB-like hel 95.2 0.03 6.4E-07 55.3 5.3 39 176-214 21-60 (259)
253 PRK05541 adenylylsulfate kinas 95.1 0.037 8.1E-07 51.0 5.5 39 173-212 7-45 (176)
254 cd00154 Rab Rab family. Rab G 95.1 0.33 7.3E-06 42.7 11.7 67 279-346 47-117 (159)
255 cd01882 BMS1 Bms1. Bms1 is an 95.1 0.2 4.3E-06 48.4 10.8 64 280-346 82-145 (225)
256 PF02606 LpxK: Tetraacyldisacc 95.1 0.073 1.6E-06 54.3 8.0 39 174-212 36-75 (326)
257 COG1484 DnaC DNA replication p 95.1 0.029 6.2E-07 55.3 4.8 37 173-210 105-141 (254)
258 cd00880 Era_like Era (E. coli 95.1 0.15 3.3E-06 44.7 9.2 66 280-346 44-116 (163)
259 PRK12735 elongation factor Tu; 95.0 0.16 3.6E-06 53.4 10.6 68 279-346 73-140 (396)
260 PRK09302 circadian clock prote 95.0 0.061 1.3E-06 58.6 7.6 39 174-213 32-71 (509)
261 PF06155 DUF971: Protein of un 95.0 0.016 3.4E-07 47.3 2.3 27 491-517 8-34 (89)
262 PRK05439 pantothenate kinase; 95.0 0.048 1E-06 55.1 6.1 41 173-214 86-128 (311)
263 PF01695 IstB_IS21: IstB-like 95.0 0.033 7.2E-07 51.7 4.7 37 174-211 48-84 (178)
264 PF01926 MMR_HSR1: 50S ribosom 94.9 0.37 8E-06 40.9 10.9 63 279-343 45-116 (116)
265 PRK08233 hypothetical protein; 94.9 0.023 4.9E-07 52.5 3.5 37 174-213 4-40 (182)
266 cd04122 Rab14 Rab14 subfamily. 94.9 1.1 2.4E-05 40.3 14.7 67 280-346 50-119 (166)
267 PF00485 PRK: Phosphoribulokin 94.9 0.033 7.1E-07 52.4 4.5 38 175-213 1-42 (194)
268 COG0467 RAD55 RecA-superfamily 94.9 0.046 1E-06 54.0 5.8 41 173-214 23-63 (260)
269 cd02019 NK Nucleoside/nucleoti 94.9 0.047 1E-06 42.1 4.6 32 176-210 2-33 (69)
270 cd04160 Arfrp1 Arfrp1 subfamil 94.9 0.4 8.7E-06 43.2 11.6 67 279-346 48-119 (167)
271 PRK08533 flagellar accessory p 94.9 0.05 1.1E-06 52.7 5.8 39 174-213 25-63 (230)
272 COG2874 FlaH Predicted ATPases 94.9 0.11 2.4E-06 49.0 7.6 101 176-288 30-131 (235)
273 PRK06526 transposase; Provisio 94.9 0.019 4.1E-07 56.5 2.9 35 175-210 100-134 (254)
274 TIGR02238 recomb_DMC1 meiotic 94.9 0.038 8.3E-07 56.1 5.1 38 175-212 97-140 (313)
275 cd04137 RheB Rheb (Ras Homolog 94.8 0.57 1.2E-05 42.9 12.7 67 280-347 48-119 (180)
276 cd01864 Rab19 Rab19 subfamily. 94.8 0.3 6.5E-06 44.1 10.6 66 280-346 51-120 (165)
277 cd01867 Rab8_Rab10_Rab13_like 94.8 0.94 2E-05 41.0 13.9 66 280-346 51-120 (167)
278 cd04161 Arl2l1_Arl13_like Arl2 94.8 0.62 1.4E-05 42.3 12.6 67 279-346 41-112 (167)
279 cd01888 eIF2_gamma eIF2-gamma 94.8 0.25 5.5E-06 46.7 10.3 66 281-346 83-149 (203)
280 COG1159 Era GTPase [General fu 94.8 0.23 4.9E-06 49.2 10.0 111 175-346 8-126 (298)
281 cd04110 Rab35 Rab35 subfamily. 94.8 0.44 9.6E-06 44.8 11.9 67 280-346 54-122 (199)
282 cd04139 RalA_RalB RalA/RalB su 94.7 0.59 1.3E-05 41.7 12.1 67 279-346 46-117 (164)
283 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.7 0.99 2.1E-05 41.3 13.7 66 280-346 49-119 (172)
284 PLN00043 elongation factor 1-a 94.7 0.14 3E-06 54.8 9.0 69 278-346 82-157 (447)
285 TIGR03600 phage_DnaB phage rep 94.7 0.044 9.4E-07 58.2 5.2 37 176-212 196-233 (421)
286 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.064 1.4E-06 51.7 5.8 38 174-212 21-58 (229)
287 PTZ00416 elongation factor 2; 94.6 0.13 2.8E-06 59.3 9.2 68 279-347 90-157 (836)
288 cd04112 Rab26 Rab26 subfamily. 94.6 0.52 1.1E-05 43.9 11.8 66 280-346 49-118 (191)
289 KOG0635 Adenosine 5'-phosphosu 94.6 0.083 1.8E-06 46.8 5.7 53 169-222 27-79 (207)
290 smart00175 RAB Rab subfamily o 94.5 0.76 1.6E-05 41.0 12.3 66 280-346 48-117 (164)
291 cd02025 PanK Pantothenate kina 94.4 0.053 1.2E-06 52.2 4.8 39 175-214 1-41 (220)
292 TIGR00073 hypB hydrogenase acc 94.4 0.21 4.5E-06 47.5 8.8 39 173-213 22-60 (207)
293 PRK05506 bifunctional sulfate 94.4 0.15 3.3E-06 57.0 9.0 69 278-346 101-169 (632)
294 COG4108 PrfC Peptide chain rel 94.4 0.21 4.5E-06 51.8 9.0 84 279-371 79-164 (528)
295 TIGR03594 GTPase_EngA ribosome 94.4 0.29 6.3E-06 52.0 10.8 68 279-347 45-120 (429)
296 PRK05595 replicative DNA helic 94.3 0.056 1.2E-06 57.8 5.2 38 175-212 202-240 (444)
297 COG4240 Predicted kinase [Gene 94.3 0.057 1.2E-06 51.2 4.5 39 174-212 50-89 (300)
298 PRK09183 transposase/IS protei 94.3 0.061 1.3E-06 53.1 5.0 36 174-210 103-138 (259)
299 PRK06217 hypothetical protein; 94.3 0.055 1.2E-06 50.4 4.5 33 174-212 2-34 (183)
300 COG1663 LpxK Tetraacyldisaccha 94.3 0.15 3.3E-06 51.4 7.7 41 174-214 48-89 (336)
301 TIGR03880 KaiC_arch_3 KaiC dom 94.3 0.086 1.9E-06 50.7 5.9 38 174-212 17-54 (224)
302 PF08433 KTI12: Chromatin asso 94.3 0.053 1.1E-06 53.8 4.4 37 176-212 3-39 (270)
303 cd01672 TMPK Thymidine monopho 94.2 0.074 1.6E-06 49.6 5.0 35 175-210 2-36 (200)
304 cd02023 UMPK Uridine monophosp 94.1 0.065 1.4E-06 50.4 4.7 36 176-214 2-37 (198)
305 TIGR00041 DTMP_kinase thymidyl 94.1 0.084 1.8E-06 49.4 5.4 37 173-210 3-39 (195)
306 PRK00093 GTP-binding protein D 94.1 1 2.2E-05 47.9 14.3 67 279-346 219-296 (435)
307 PRK12377 putative replication 94.1 0.072 1.6E-06 52.2 4.9 36 175-211 103-138 (248)
308 PRK05306 infB translation init 94.1 0.45 9.8E-06 54.2 11.8 67 279-346 335-401 (787)
309 PRK08506 replicative DNA helic 94.1 0.07 1.5E-06 57.4 5.2 39 175-213 193-231 (472)
310 smart00173 RAS Ras subfamily o 94.0 1.3 2.8E-05 39.6 13.0 67 280-347 47-118 (164)
311 COG0468 RecA RecA/RadA recombi 94.0 0.13 2.8E-06 51.1 6.5 39 173-212 60-98 (279)
312 PRK03003 GTP-binding protein D 93.9 0.44 9.6E-06 51.4 11.1 67 279-346 84-158 (472)
313 cd01860 Rab5_related Rab5-rela 93.9 0.76 1.7E-05 41.1 11.2 67 280-346 49-118 (163)
314 PRK05433 GTP-binding protein L 93.9 0.39 8.5E-06 53.3 10.9 85 279-370 72-156 (600)
315 cd01866 Rab2 Rab2 subfamily. 93.9 0.7 1.5E-05 41.9 10.9 65 281-346 53-121 (168)
316 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.9 1.1 2.4E-05 40.2 12.3 66 280-346 50-119 (166)
317 cd04101 RabL4 RabL4 (Rab-like4 93.9 0.8 1.7E-05 41.0 11.2 67 279-346 50-119 (164)
318 TIGR03420 DnaA_homol_Hda DnaA 93.9 0.085 1.9E-06 50.6 5.0 38 175-213 40-77 (226)
319 COG0480 FusA Translation elong 93.9 0.29 6.3E-06 54.8 9.7 96 278-380 72-169 (697)
320 cd04109 Rab28 Rab28 subfamily. 93.9 0.77 1.7E-05 43.7 11.6 87 280-370 49-141 (215)
321 cd00878 Arf_Arl Arf (ADP-ribos 93.9 0.87 1.9E-05 40.6 11.3 66 280-346 42-112 (158)
322 PRK08760 replicative DNA helic 93.9 0.073 1.6E-06 57.3 4.9 40 175-214 230-270 (476)
323 PRK06749 replicative DNA helic 93.8 0.079 1.7E-06 56.2 5.0 39 176-214 188-226 (428)
324 PTZ00035 Rad51 protein; Provis 93.8 0.089 1.9E-06 54.0 5.3 39 173-212 118-162 (337)
325 PRK11823 DNA repair protein Ra 93.8 0.088 1.9E-06 56.2 5.4 37 176-212 82-118 (446)
326 PLN02924 thymidylate kinase 93.8 0.11 2.4E-06 50.0 5.5 40 169-209 12-51 (220)
327 TIGR00416 sms DNA repair prote 93.8 0.087 1.9E-06 56.4 5.3 37 176-212 96-132 (454)
328 cd01868 Rab11_like Rab11-like. 93.8 0.74 1.6E-05 41.4 10.8 67 280-346 51-120 (165)
329 PLN03187 meiotic recombination 93.8 0.092 2E-06 53.9 5.2 38 175-212 127-170 (344)
330 PRK09519 recA DNA recombinatio 93.8 0.14 2.9E-06 57.9 6.9 39 176-214 62-100 (790)
331 cd00009 AAA The AAA+ (ATPases 93.7 0.11 2.3E-06 45.2 4.9 39 175-214 21-59 (151)
332 cd04126 Rab20 Rab20 subfamily. 93.7 4.9 0.00011 38.5 16.7 68 279-346 42-112 (220)
333 cd01898 Obg Obg subfamily. Th 93.6 0.98 2.1E-05 40.7 11.4 65 281-346 48-126 (170)
334 cd04111 Rab39 Rab39 subfamily. 93.5 3.7 7.9E-05 39.0 15.6 67 280-346 51-121 (211)
335 PF01935 DUF87: Domain of unkn 93.5 0.11 2.3E-06 50.1 5.0 38 174-212 24-62 (229)
336 PRK00131 aroK shikimate kinase 93.5 0.077 1.7E-06 48.4 3.8 33 174-212 5-37 (175)
337 PTZ00133 ADP-ribosylation fact 93.5 4.4 9.5E-05 37.4 15.7 68 279-346 59-130 (182)
338 TIGR02655 circ_KaiC circadian 93.5 0.2 4.3E-06 54.2 7.5 38 174-212 22-60 (484)
339 PF02572 CobA_CobO_BtuR: ATP:c 93.5 0.15 3.2E-06 46.9 5.5 35 176-211 6-40 (172)
340 PRK06835 DNA replication prote 93.5 0.089 1.9E-06 53.8 4.5 38 174-212 184-221 (329)
341 cd04136 Rap_like Rap-like subf 93.5 1.8 3.8E-05 38.6 12.7 66 280-346 48-118 (163)
342 cd01861 Rab6 Rab6 subfamily. 93.5 1.3 2.9E-05 39.4 11.8 66 281-346 49-117 (161)
343 PRK08118 topology modulation p 93.5 0.073 1.6E-06 48.8 3.5 24 174-198 2-25 (167)
344 TIGR00665 DnaB replicative DNA 93.4 0.11 2.4E-06 55.4 5.2 39 176-214 197-236 (434)
345 PRK08006 replicative DNA helic 93.4 0.11 2.3E-06 55.9 5.1 39 175-213 225-264 (471)
346 cd04119 RJL RJL (RabJ-Like) su 93.4 1.6 3.4E-05 39.0 12.2 68 279-346 47-122 (168)
347 COG2403 Predicted GTPase [Gene 93.3 0.11 2.5E-06 52.6 4.8 37 174-210 127-163 (449)
348 cd04108 Rab36_Rab34 Rab34/Rab3 93.3 0.84 1.8E-05 41.7 10.5 67 280-346 48-118 (170)
349 PF13173 AAA_14: AAA domain 93.3 0.11 2.4E-06 45.2 4.4 39 174-214 3-41 (128)
350 COG0237 CoaE Dephospho-CoA kin 93.3 0.1 2.2E-06 49.4 4.3 34 172-212 1-34 (201)
351 cd04118 Rab24 Rab24 subfamily. 93.3 1.3 2.8E-05 41.1 11.9 65 281-346 50-117 (193)
352 PRK12317 elongation factor 1-a 93.3 0.66 1.4E-05 49.3 11.0 69 278-346 81-151 (425)
353 PLN03186 DNA repair protein RA 93.3 0.12 2.7E-06 53.0 5.2 39 175-213 124-168 (342)
354 PF00154 RecA: recA bacterial 93.2 0.17 3.7E-06 51.3 6.1 39 173-212 53-91 (322)
355 cd04113 Rab4 Rab4 subfamily. 93.2 1.6 3.5E-05 38.9 12.1 66 280-346 48-117 (161)
356 cd04106 Rab23_lke Rab23-like s 93.2 1.2 2.5E-05 39.8 11.1 88 279-371 49-139 (162)
357 PRK04040 adenylate kinase; Pro 93.2 0.11 2.4E-06 48.6 4.4 32 172-205 1-32 (188)
358 PRK09270 nucleoside triphospha 93.2 0.15 3.3E-06 49.3 5.5 39 174-213 34-73 (229)
359 PF05729 NACHT: NACHT domain 93.2 0.097 2.1E-06 47.1 3.9 26 177-202 3-28 (166)
360 cd04175 Rap1 Rap1 subgroup. T 93.1 2 4.4E-05 38.5 12.6 67 280-347 48-119 (164)
361 PRK05642 DNA replication initi 93.1 0.11 2.5E-06 50.4 4.5 35 178-212 49-83 (234)
362 TIGR00554 panK_bact pantothena 93.1 0.18 4E-06 50.5 6.0 41 173-214 62-104 (290)
363 TIGR00487 IF-2 translation ini 93.1 0.96 2.1E-05 50.0 12.1 64 282-346 136-199 (587)
364 PRK08727 hypothetical protein; 93.1 0.12 2.6E-06 50.2 4.6 35 176-211 44-78 (233)
365 cd04153 Arl5_Arl8 Arl5/Arl8 su 93.1 2.6 5.7E-05 38.4 13.4 67 279-346 57-128 (174)
366 PRK05748 replicative DNA helic 93.1 0.12 2.6E-06 55.3 5.0 39 176-214 205-244 (448)
367 PRK08939 primosomal protein Dn 93.0 0.13 2.8E-06 52.1 4.9 37 174-211 157-193 (306)
368 cd04120 Rab12 Rab12 subfamily. 93.0 4.3 9.4E-05 38.3 15.1 68 280-347 48-118 (202)
369 PRK08840 replicative DNA helic 93.0 0.13 2.8E-06 55.1 5.1 39 175-213 218-257 (464)
370 TIGR03594 GTPase_EngA ribosome 93.0 1.8 3.8E-05 46.0 13.8 66 280-346 219-295 (429)
371 smart00178 SAR Sar1p-like memb 93.0 2.9 6.3E-05 38.6 13.7 82 279-370 59-145 (184)
372 PRK06904 replicative DNA helic 93.0 0.12 2.7E-06 55.5 4.9 38 176-213 223-261 (472)
373 PLN00116 translation elongatio 93.0 0.32 7E-06 56.2 8.6 66 280-346 97-162 (843)
374 PRK04328 hypothetical protein; 93.0 0.18 3.9E-06 49.4 5.7 38 174-212 24-61 (249)
375 cd04115 Rab33B_Rab33A Rab33B/R 93.0 1.2 2.7E-05 40.3 11.0 67 279-346 49-121 (170)
376 PF12846 AAA_10: AAA-like doma 92.9 0.13 2.9E-06 51.2 4.8 33 179-211 6-38 (304)
377 PRK06761 hypothetical protein; 92.9 0.12 2.6E-06 51.5 4.3 39 173-212 3-42 (282)
378 KOG3381 Uncharacterized conser 92.9 0.3 6.5E-06 42.9 6.1 59 73-131 32-97 (161)
379 TIGR01393 lepA GTP-binding pro 92.9 0.85 1.8E-05 50.6 11.4 84 280-370 69-152 (595)
380 PRK08903 DnaA regulatory inact 92.9 0.15 3.2E-06 49.1 4.9 37 175-212 44-80 (227)
381 TIGR00235 udk uridine kinase. 92.9 0.14 3E-06 48.7 4.6 39 173-214 6-44 (207)
382 TIGR00475 selB selenocysteine- 92.9 0.28 6.2E-06 54.2 7.6 67 280-346 49-115 (581)
383 cd01131 PilT Pilus retraction 92.9 1.3 2.8E-05 41.8 11.2 34 176-210 4-38 (198)
384 PLN03110 Rab GTPase; Provision 92.9 4.2 9E-05 38.8 14.9 66 280-346 60-129 (216)
385 PRK10512 selenocysteinyl-tRNA- 92.8 0.42 9.1E-06 53.2 8.9 66 281-346 51-116 (614)
386 cd01895 EngA2 EngA2 subfamily. 92.8 1.4 3E-05 39.4 11.1 67 279-346 48-125 (174)
387 cd00876 Ras Ras family. The R 92.8 1.9 4E-05 38.1 11.8 68 280-347 46-117 (160)
388 PRK09554 feoB ferrous iron tra 92.8 1 2.2E-05 51.5 12.0 89 279-375 48-148 (772)
389 cd04102 RabL3 RabL3 (Rab-like3 92.8 4.8 0.0001 38.1 15.0 96 279-375 52-170 (202)
390 PRK07933 thymidylate kinase; V 92.7 0.23 5E-06 47.5 5.9 37 175-212 2-38 (213)
391 PLN00223 ADP-ribosylation fact 92.7 8.1 0.00018 35.6 16.4 84 279-371 59-146 (181)
392 COG1102 Cmk Cytidylate kinase 92.6 0.1 2.2E-06 47.0 3.0 24 175-199 2-25 (179)
393 cd04145 M_R_Ras_like M-Ras/R-R 92.6 1.8 3.9E-05 38.6 11.5 66 281-347 50-120 (164)
394 cd01878 HflX HflX subfamily. 92.6 1.6 3.5E-05 40.9 11.6 66 280-346 88-165 (204)
395 PRK06321 replicative DNA helic 92.6 0.16 3.5E-06 54.6 5.1 38 176-213 228-266 (472)
396 cd04107 Rab32_Rab38 Rab38/Rab3 92.6 6.3 0.00014 36.9 15.6 86 279-369 48-141 (201)
397 PRK08181 transposase; Validate 92.6 0.14 3.1E-06 50.7 4.4 36 175-211 108-143 (269)
398 PRK10463 hydrogenase nickel in 92.6 0.29 6.3E-06 48.9 6.5 38 174-213 105-142 (290)
399 PRK06547 hypothetical protein; 92.5 0.14 3.1E-06 47.2 4.0 35 173-213 15-49 (172)
400 PRK07261 topology modulation p 92.4 0.15 3.2E-06 47.0 4.0 23 175-198 2-24 (171)
401 cd01865 Rab3 Rab3 subfamily. 92.4 2.2 4.8E-05 38.4 11.8 68 280-347 49-119 (165)
402 PLN03118 Rab family protein; P 92.4 1.6 3.6E-05 41.3 11.4 66 280-346 61-132 (211)
403 PLN03046 D-glycerate 3-kinase; 92.4 0.22 4.7E-06 52.1 5.5 41 173-214 212-252 (460)
404 cd01897 NOG NOG1 is a nucleola 92.4 1.6 3.4E-05 39.2 10.8 20 175-195 2-21 (168)
405 cd04148 RGK RGK subfamily. Th 92.4 2.6 5.6E-05 40.4 12.7 65 279-346 48-118 (221)
406 cd01892 Miro2 Miro2 subfamily. 92.3 8.4 0.00018 34.9 15.8 85 281-370 54-140 (169)
407 PRK03731 aroL shikimate kinase 92.3 0.15 3.4E-06 46.6 4.0 36 172-213 1-36 (171)
408 cd04154 Arl2 Arl2 subfamily. 92.3 2.2 4.7E-05 38.8 11.7 66 280-346 57-127 (173)
409 PRK06893 DNA replication initi 92.3 0.17 3.8E-06 48.9 4.5 35 176-211 42-76 (229)
410 PF13671 AAA_33: AAA domain; P 92.3 0.11 2.3E-06 45.9 2.8 31 177-212 2-32 (143)
411 TIGR03172 probable selenium-de 92.2 0.17 3.6E-06 48.9 4.2 31 175-208 1-31 (232)
412 cd04121 Rab40 Rab40 subfamily. 92.2 5.8 0.00013 37.0 14.6 87 280-370 54-142 (189)
413 cd04155 Arl3 Arl3 subfamily. 92.2 2.4 5.1E-05 38.4 11.8 21 174-195 15-35 (173)
414 PRK09165 replicative DNA helic 92.2 0.18 3.9E-06 54.6 4.9 39 176-214 219-272 (497)
415 PRK03003 GTP-binding protein D 92.2 2.6 5.7E-05 45.4 13.8 43 302-346 291-334 (472)
416 PLN03108 Rab family protein; P 92.1 7 0.00015 37.0 15.3 112 281-417 55-172 (210)
417 PRK05636 replicative DNA helic 92.1 0.2 4.4E-06 54.2 5.1 39 175-213 266-305 (505)
418 PLN02796 D-glycerate 3-kinase 92.1 0.23 5E-06 50.7 5.2 39 174-213 101-139 (347)
419 PF13604 AAA_30: AAA domain; P 92.1 0.23 5.1E-06 46.8 5.0 35 176-210 20-54 (196)
420 smart00177 ARF ARF-like small 92.1 4 8.7E-05 37.3 13.2 68 279-346 55-126 (175)
421 cd04123 Rab21 Rab21 subfamily. 92.0 3 6.4E-05 36.9 12.1 67 280-347 48-118 (162)
422 PF13086 AAA_11: AAA domain; P 92.0 0.15 3.2E-06 48.6 3.6 34 176-209 19-60 (236)
423 COG1936 Predicted nucleotide k 92.0 0.17 3.6E-06 46.2 3.6 28 175-207 2-29 (180)
424 PRK08116 hypothetical protein; 92.0 0.22 4.8E-06 49.4 4.9 35 177-211 117-151 (268)
425 PRK07560 elongation factor EF- 92.0 0.48 1E-05 54.0 8.3 67 279-346 85-151 (731)
426 cd01862 Rab7 Rab7 subfamily. 92.0 1.8 3.9E-05 38.9 10.7 66 281-347 49-122 (172)
427 PRK13947 shikimate kinase; Pro 91.9 0.22 4.7E-06 45.5 4.5 32 175-212 3-34 (171)
428 PRK06921 hypothetical protein; 91.9 0.21 4.6E-06 49.5 4.6 37 173-210 117-154 (266)
429 PRK08084 DNA replication initi 91.8 0.21 4.6E-06 48.5 4.5 37 175-212 47-83 (235)
430 PRK05380 pyrG CTP synthetase; 91.8 0.57 1.2E-05 50.5 8.0 49 172-220 1-50 (533)
431 PRK05506 bifunctional sulfate 91.8 0.22 4.7E-06 55.8 5.2 43 172-215 459-501 (632)
432 PRK09866 hypothetical protein; 91.7 0.78 1.7E-05 50.5 9.0 67 279-346 228-301 (741)
433 cd04140 ARHI_like ARHI subfami 91.7 3.6 7.8E-05 37.0 12.3 67 279-346 47-120 (165)
434 cd02021 GntK Gluconate kinase 91.7 0.16 3.5E-06 45.3 3.3 33 177-214 2-34 (150)
435 PRK12339 2-phosphoglycerate ki 91.6 0.19 4.2E-06 47.4 3.9 34 175-212 4-37 (197)
436 TIGR02239 recomb_RAD51 DNA rep 91.6 0.24 5.1E-06 50.5 4.8 39 174-213 97-141 (316)
437 KOG2749 mRNA cleavage and poly 91.6 0.33 7.1E-06 49.1 5.5 43 174-217 104-146 (415)
438 cd04142 RRP22 RRP22 subfamily. 91.6 2 4.2E-05 40.5 10.8 66 280-346 48-128 (198)
439 COG0378 HypB Ni2+-binding GTPa 91.5 0.88 1.9E-05 42.4 7.8 40 173-214 13-52 (202)
440 PRK07004 replicative DNA helic 91.5 0.24 5.1E-06 53.2 4.8 39 176-214 215-254 (460)
441 CHL00189 infB translation init 91.4 0.78 1.7E-05 51.9 8.9 67 279-346 293-359 (742)
442 PRK06851 hypothetical protein; 91.4 0.42 9.2E-06 49.4 6.3 41 170-211 211-251 (367)
443 cd04117 Rab15 Rab15 subfamily. 91.3 2.8 6.2E-05 37.6 11.2 67 280-346 48-117 (161)
444 cd02024 NRK1 Nicotinamide ribo 91.3 0.18 4E-06 47.1 3.3 34 176-214 2-35 (187)
445 PRK00081 coaE dephospho-CoA ki 91.3 0.25 5.3E-06 46.5 4.2 35 172-213 1-35 (194)
446 cd04177 RSR1 RSR1 subgroup. R 91.3 11 0.00023 33.9 15.1 65 281-346 49-118 (168)
447 PF13401 AAA_22: AAA domain; P 91.2 0.21 4.6E-06 43.1 3.5 39 176-214 6-49 (131)
448 cd01863 Rab18 Rab18 subfamily. 91.1 4.4 9.5E-05 36.0 12.2 67 279-346 47-118 (161)
449 PRK13946 shikimate kinase; Pro 91.1 0.24 5.3E-06 46.1 4.0 33 174-212 11-43 (184)
450 TIGR02236 recomb_radA DNA repa 91.1 0.26 5.7E-06 49.9 4.5 39 174-213 96-140 (310)
451 cd04138 H_N_K_Ras_like H-Ras/N 91.0 7.1 0.00015 34.4 13.5 65 281-346 49-118 (162)
452 cd04162 Arl9_Arfrp2_like Arl9/ 91.0 4.5 9.8E-05 36.5 12.2 67 279-346 42-111 (164)
453 PRK00698 tmk thymidylate kinas 91.0 0.4 8.7E-06 45.0 5.4 35 173-208 3-37 (205)
454 PRK14490 putative bifunctional 90.9 0.47 1E-05 49.4 6.2 39 173-213 5-43 (369)
455 PF00931 NB-ARC: NB-ARC domain 90.9 0.26 5.6E-06 49.0 4.2 41 173-214 19-61 (287)
456 PHA02530 pseT polynucleotide k 90.8 0.22 4.7E-06 50.1 3.6 37 172-213 1-37 (300)
457 cd04114 Rab30 Rab30 subfamily. 90.8 4.4 9.5E-05 36.3 12.0 65 281-346 56-124 (169)
458 PF00004 AAA: ATPase family as 90.8 0.35 7.5E-06 41.6 4.4 31 179-212 3-33 (132)
459 COG1072 CoaA Panthothenate kin 90.8 0.45 9.8E-06 46.7 5.5 41 173-214 82-124 (283)
460 PF03266 NTPase_1: NTPase; In 90.7 0.35 7.6E-06 44.4 4.6 31 178-208 3-33 (168)
461 PRK05537 bifunctional sulfate 90.7 0.34 7.4E-06 53.3 5.2 40 173-213 392-432 (568)
462 cd04151 Arl1 Arl1 subfamily. 90.7 3.9 8.5E-05 36.4 11.4 67 279-346 41-112 (158)
463 COG0572 Udk Uridine kinase [Nu 90.7 0.33 7.2E-06 46.2 4.4 40 174-216 9-48 (218)
464 PTZ00301 uridine kinase; Provi 90.6 0.49 1.1E-05 45.1 5.5 40 174-214 4-45 (210)
465 PRK09518 bifunctional cytidyla 90.4 2.3 5E-05 48.4 11.6 67 279-346 321-395 (712)
466 TIGR02729 Obg_CgtA Obg family 90.3 4.9 0.00011 41.1 13.0 65 281-346 205-285 (329)
467 PRK03839 putative kinase; Prov 90.3 0.3 6.5E-06 45.1 3.8 31 175-211 2-32 (180)
468 PF09848 DUF2075: Uncharacteri 90.3 0.34 7.3E-06 50.1 4.5 37 175-211 2-40 (352)
469 smart00174 RHO Rho (Ras homolo 90.3 2 4.4E-05 38.9 9.3 67 279-346 44-114 (174)
470 cd04146 RERG_RasL11_like RERG/ 90.2 3.1 6.7E-05 37.3 10.4 66 280-346 46-118 (165)
471 cd01893 Miro1 Miro1 subfamily. 90.2 3.3 7.1E-05 37.3 10.5 68 279-347 45-116 (166)
472 cd04150 Arf1_5_like Arf1-Arf5- 90.2 4.1 9E-05 36.5 11.1 67 279-346 42-113 (159)
473 PF13238 AAA_18: AAA domain; P 90.1 0.27 5.9E-06 42.1 3.1 21 178-198 2-22 (129)
474 cd04144 Ras2 Ras2 subfamily. 90.1 5.1 0.00011 37.1 12.0 65 281-346 47-118 (190)
475 PRK04301 radA DNA repair and r 90.1 0.36 7.8E-06 49.1 4.4 38 175-212 103-146 (317)
476 KOG2743 Cobalamin synthesis pr 90.0 3.5 7.6E-05 41.0 10.8 35 176-212 59-93 (391)
477 PRK13695 putative NTPase; Prov 90.0 0.53 1.1E-05 43.2 5.1 31 175-206 2-32 (174)
478 PRK13973 thymidylate kinase; P 89.9 0.55 1.2E-05 44.8 5.4 35 174-209 4-38 (213)
479 KOG0460 Mitochondrial translat 89.9 0.71 1.5E-05 46.5 6.1 66 282-347 118-183 (449)
480 PRK04220 2-phosphoglycerate ki 89.8 0.52 1.1E-05 47.3 5.2 37 173-214 92-128 (301)
481 PF06414 Zeta_toxin: Zeta toxi 89.8 0.34 7.3E-06 45.7 3.8 39 174-214 15-53 (199)
482 TIGR01420 pilT_fam pilus retra 89.8 2.7 5.8E-05 43.3 10.6 34 176-209 124-158 (343)
483 PF02421 FeoB_N: Ferrous iron 89.8 1.5 3.2E-05 39.7 7.7 92 279-378 45-144 (156)
484 PRK13975 thymidylate kinase; P 89.8 0.35 7.7E-06 45.2 3.8 27 172-199 1-27 (196)
485 PRK14730 coaE dephospho-CoA ki 89.6 0.46 1E-05 44.7 4.5 34 174-213 2-35 (195)
486 PRK12296 obgE GTPase CgtA; Rev 89.5 3.9 8.5E-05 44.2 11.9 21 175-196 161-181 (500)
487 cd04156 ARLTS1 ARLTS1 subfamil 89.5 4.2 9.1E-05 36.1 10.6 66 280-346 43-113 (160)
488 PTZ00451 dephospho-CoA kinase; 89.5 0.43 9.4E-06 46.6 4.3 35 173-213 1-35 (244)
489 COG2109 BtuR ATP:corrinoid ade 89.5 1.4 3.1E-05 40.8 7.3 36 173-210 29-64 (198)
490 PLN02422 dephospho-CoA kinase 89.3 0.47 1E-05 45.9 4.3 34 173-213 1-34 (232)
491 PRK09302 circadian clock prote 89.3 0.55 1.2E-05 51.1 5.4 39 173-212 273-311 (509)
492 cd04116 Rab9 Rab9 subfamily. 89.3 6.4 0.00014 35.4 11.8 67 279-346 52-126 (170)
493 PLN02348 phosphoribulokinase 89.3 0.73 1.6E-05 47.9 5.9 41 173-214 49-104 (395)
494 COG2895 CysN GTPases - Sulfate 89.2 0.92 2E-05 46.0 6.3 94 279-380 84-185 (431)
495 PF13191 AAA_16: AAA ATPase do 89.2 0.55 1.2E-05 43.1 4.6 39 174-213 25-63 (185)
496 TIGR00337 PyrG CTP synthase. C 89.0 1.3 2.8E-05 47.7 7.8 49 174-222 2-51 (525)
497 PRK14734 coaE dephospho-CoA ki 89.0 0.56 1.2E-05 44.3 4.6 33 173-212 1-33 (200)
498 cd04152 Arl4_Arl7 Arl4/Arl7 su 89.0 17 0.00037 33.3 14.6 67 279-346 50-121 (183)
499 PRK12298 obgE GTPase CgtA; Rev 89.0 6.8 0.00015 41.1 13.0 64 282-346 208-287 (390)
500 PRK13949 shikimate kinase; Pro 88.9 0.33 7.1E-06 44.6 2.8 33 174-212 2-34 (169)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=416.42 Aligned_cols=346 Identities=34% Similarity=0.541 Sum_probs=284.8
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEEecc
Q 009721 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (527)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~l~~ 154 (527)
..+++|+++|++|.||+++.|||++|+|.++.+++ +++.+.+.++.+.||..+.+.+++++++..++|++++++++..
T Consensus 12 ~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (369)
T PRK11670 12 ALRAMVAGTLANFQHPTLKHNLTTLKALHHVALLD--DTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSH 89 (369)
T ss_pred chHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEee
Confidence 46799999999999999999999999999999987 7999999999999999999999999999999999988887765
Q ss_pred CCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCC
Q 009721 155 QPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEK 234 (527)
Q Consensus 155 ~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~ 234 (527)
...... ...-...+.+++++|+|+|+||||||||+|+|||.+||+.|+||++||+|+|+++++.+||.+...... ...
T Consensus 90 ~~~~~~-~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~~ 167 (369)
T PRK11670 90 NIATLK-RVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PDG 167 (369)
T ss_pred ehhhhc-cccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cCC
Confidence 322110 000123577889999999999999999999999999999999999999999999999999865321111 112
Q ss_pred CceeeeccCCceEEccCCC--CCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEe
Q 009721 235 RTIIPTEYLGVKLVSFGFS--GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVT 312 (527)
Q Consensus 235 ~~i~~~~~~gl~vl~~~~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~ 312 (527)
..+.+....++...+.+.. ......|++++....+.+++....|++|||||||||||+++..+++.++.++|.+++|+
T Consensus 168 ~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~ 247 (369)
T PRK11670 168 THMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVT 247 (369)
T ss_pred ceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEe
Confidence 2344433344443332221 22345577888778888887655578999999999999999877777788899999999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCC
Q 009721 313 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (527)
Q Consensus 313 ~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (527)
+|+..++.++.+.++++.+.+++++|+|+||+++.+. ++.+..|+++..+++++.|+.++++.||++..+.++.+.|+
T Consensus 248 tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~ 327 (369)
T PRK11670 248 TPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGT 327 (369)
T ss_pred cCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCC
Confidence 9999999999999999999999999999999877653 33344577778999999999999999999999999999999
Q ss_pred ceEeeCCCCHHHHHHHHHHHHHHHHHHHHhcccc
Q 009721 391 PEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVS 424 (527)
Q Consensus 391 pv~~~~p~s~~a~~~~~la~~i~~~~~~~~~~v~ 424 (527)
|+..+.|+++++++|.++++++.+++.......+
T Consensus 328 Pv~~~~p~s~~a~~y~~LA~el~~~~~~~~~~~~ 361 (369)
T PRK11670 328 PTVVSRPESEFTAIYRQLADRVAAQLYWQGEVIP 361 (369)
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 9999999999999999999999998865443333
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.4e-44 Score=336.31 Aligned_cols=289 Identities=40% Similarity=0.618 Sum_probs=243.0
Q ss_pred CCcHHHHHHHHHHHhhcCCCeeeEEEEeccCCCchhh-hccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCC
Q 009721 125 CPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPIF-AEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA 203 (527)
Q Consensus 125 cp~~~~l~~~i~~~L~~l~gv~~v~V~l~~~p~~~~~-~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~ 203 (527)
||..+.....-.+.....+.+.... . .|..+.. -...+..+.+.+++|+|.||||||||||+|+|||.+||+.|+
T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~---~-~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~ 77 (300)
T KOG3022|consen 2 CPGVLSSEAGKAEECAGCPNVGYCS---S-SPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGK 77 (300)
T ss_pred CCCcchhhhcchhhccCCccccccc---c-CCcCcCCCcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCC
Confidence 6666555544455555444443332 2 1221110 011245778889999999999999999999999999999999
Q ss_pred cEEEEEeCCCCCCCCccCCCCccccccCCCCCceee-eccCCceEEccCCCC---CcccccCCccHHHHHHHHHHhcccC
Q 009721 204 RVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWG 279 (527)
Q Consensus 204 rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~-~~~~gl~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~ 279 (527)
+|.++|+|..+|+++.++|.+.+...... ....| ....|+.+++.++.. ++..+|+++....+|++++....|+
T Consensus 78 ~vglLD~Dl~GPSiP~m~g~e~~~~~~~~--~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg 155 (300)
T KOG3022|consen 78 KVGLLDADLCGPSIPRMMGLEGEVVHQSD--NGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWG 155 (300)
T ss_pred cEEEEeecccCCCchhhcCCCCceeeecC--CCceeeeecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCC
Confidence 99999999999999999999987643322 23334 556799999998764 3478999999999999999999999
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCC-CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccC--CCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~-d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~--~~~~~~~~ 356 (527)
+.||+|||||||+++.++++.+.+.- +.+++|+||+..++.++++.++++++.+++++|+|.||+.|.+ +++..+.|
T Consensus 156 ~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF 235 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIF 235 (300)
T ss_pred CcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceec
Confidence 99999999999999999888776665 8899999999999999999999999999999999999999987 46777789
Q ss_pred CCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHH
Q 009721 357 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 419 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~~ 419 (527)
+.+..+.+.+.+|+++++.||.|+.+.++.+.|.|+++..|+++++++|.+++.+|.+.+...
T Consensus 236 ~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~~~ 298 (300)
T KOG3022|consen 236 GSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLSSK 298 (300)
T ss_pred cCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEecCCCchHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999999887643
No 3
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.1e-32 Score=269.84 Aligned_cols=232 Identities=19% Similarity=0.169 Sum_probs=172.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc--ccccc--------CCCCCceeeecc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTEY 242 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~--------~~~~~~i~~~~~ 242 (527)
||+|+|+ +||||||||+|+|||.+||++|+||++||+|+|++++..++|... .+.+. ....+.+.+. .
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~-~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG-F 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC-C
Confidence 4899999 999999999999999999999999999999999999988876422 11110 1112233343 5
Q ss_pred CCceEEccCCCCCccc-ccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 243 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~-~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
+|++++|++....... ..++......+.+.+..+ +++||||||||++++... ......+.++|.+++|++|+..++.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 7999999765322111 112222222355555544 478999999998765311 1111113478999999999999999
Q ss_pred HHHHHHHHHHcC---CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCC
Q 009721 321 DVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (527)
Q Consensus 321 ~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 397 (527)
++.++++.++.. +.++.|+|+|+.. .. ..++..+++.+.++..++..||++..+.+|...|+|+..+.|
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p 229 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRN--VD------GERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDP 229 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCC--CC------ccHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCC
Confidence 998888777753 5667899999842 11 123467889999998888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 009721 398 CGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 398 ~s~~a~~~~~la~~i~~~ 415 (527)
+++++++|.++++++.++
T Consensus 230 ~s~~a~~y~~La~el~~~ 247 (273)
T PRK13232 230 ESNQAKEYLTLAHNVQNN 247 (273)
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 999999999999999865
No 4
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=100.00 E-value=7.5e-32 Score=265.22 Aligned_cols=227 Identities=25% Similarity=0.354 Sum_probs=176.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---ccc----cCCCCCceeeeccCCce
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGVK 246 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~~----~~~~~~~i~~~~~~gl~ 246 (527)
|+|+|.|+||||||||+|+|||++||++|+||++||+|+|+++++.++|.+.. +.. .....+.+.. ...|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYE-GPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEe-CCCCEE
Confidence 48999999999999999999999999999999999999998888888887642 111 1111222222 346899
Q ss_pred EEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009721 247 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (527)
Q Consensus 247 vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~ 326 (527)
++|++.......... ...+.+++..+. +.||||||||||+++...... +..+|.+++|++|+..++.++.+.+
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775432221111 234555555543 689999999999998765544 5678999999999999999988888
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHHHH
Q 009721 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 406 (527)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~ 406 (527)
+.++..+.+..++|+|++..... ....+.+.+.++.++++.||+++.+.++...|+|+.++.|+++++++|+
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~~~--------~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 224 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRDKT--------ELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFM 224 (251)
T ss_pred HHHHhcCCceEEEEEECCCchhh--------hhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHH
Confidence 88888888889999999643211 1234567777898999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009721 407 DLGVCVVQQC 416 (527)
Q Consensus 407 ~la~~i~~~~ 416 (527)
+|+++|..+-
T Consensus 225 ~la~~i~~~~ 234 (251)
T TIGR01969 225 ELAAELAGIE 234 (251)
T ss_pred HHHHHHHhcc
Confidence 9999987543
No 5
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=8.9e-32 Score=269.33 Aligned_cols=237 Identities=24% Similarity=0.315 Sum_probs=184.9
Q ss_pred cccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc--------cccCCCCCceee
Q 009721 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP 239 (527)
Q Consensus 168 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~~~~~~~~~i~~ 239 (527)
..++|+++|+|+|+||||||||+|+|||++|+++|+||++||+|++.++++.++|.+... .......+.+..
T Consensus 10 ~~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 10 KSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred hcCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 456788999999999999999999999999999999999999999988899888876421 111112223332
Q ss_pred -eccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009721 240 -TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (527)
Q Consensus 240 -~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s 318 (527)
..+++++++|++...... .+. ...+.++++.+.+..||||||||||+++...... +.++|.+++|++|+..+
T Consensus 90 ~~~~~~l~~l~~~~~~~~~-~~~----~~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~s 162 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRY-NVT----RKNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEITA 162 (281)
T ss_pred cCCCCCeEEEeCCCchhhc-cCC----HHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChHH
Confidence 345799999976543221 111 2235566655542389999999999987654443 56789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCC
Q 009721 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 398 (527)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~ 398 (527)
+.++.++++.+++.+....++|+|++..+..... .....+++++.++.++++.||++..+.+|...|+|+..+.|+
T Consensus 163 i~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~ 238 (281)
T CHL00175 163 IRDADRVAGLLEANGIYNVKLLVNRVRPDMIQAN----DMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKL 238 (281)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeccChhhhhhh----ccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCC
Confidence 9999999999998887778999999754321110 011357788889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 009721 399 GEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 399 s~~a~~~~~la~~i~~~ 415 (527)
++++++|++||++|.++
T Consensus 239 ~~~~~~~~~la~~l~~~ 255 (281)
T CHL00175 239 TLSGIAFENAARRLVGK 255 (281)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999998864
No 6
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.98 E-value=6.8e-32 Score=246.43 Aligned_cols=231 Identities=21% Similarity=0.279 Sum_probs=181.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc--------cCCCC-Cceeeecc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--------MNPEK-RTIIPTEY 242 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~--------~~~~~-~~i~~~~~ 242 (527)
|+++|.|+||||||||||+++||+.+||++|+||++||+|..--+++..+|.++++.. ..... ..+.....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 6789999999999999999999999999999999999999988889999999987332 11222 33444567
Q ss_pred CCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~ 322 (527)
+||.++|+....+... +..+.....++++. ..+|||||+|||.|+..-.. .++..+|.+++|++|+..|.+++
T Consensus 81 ~nL~lLPAsQtrdKda-lt~E~v~~vv~eL~----~~~fDyIi~DsPAGIE~G~~--~A~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKDA-LTPEGVKKVVNELK----AMDFDYIIIDSPAGIEQGFK--NAVYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCccc-CCHHHHHHHHHHHH----hcCCCEEEecCcchHHHHHH--hhhhccceEEEEcCCCccccccc
Confidence 8999999876544322 23334445555554 26899999999999875543 33678899999999999999999
Q ss_pred HHHHHHHHcCC----CC---EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 323 AKGVRMFSKLK----VP---CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 323 ~~~~~~l~~~~----~~---~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
.|.+.+++..+ .. ...+++||++...-.+. .--..+++.+-+.+++++.||.+..+-.|.+.|.|+...
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~G----eMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~ 229 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRG----EMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILD 229 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHHhccC----CcccHHHHHHHhCCceEEeecCchhhheecCCCCCeEeC
Confidence 99999987654 22 36889999664431111 012578999999999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 009721 396 DPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~ 414 (527)
+.+.++++|+++++++..
T Consensus 230 -~~~~a~~Ay~d~arRllG 247 (272)
T COG2894 230 -DNSDAGKAYRDIARRLLG 247 (272)
T ss_pred -CCchHHHHHHHHHHHHhC
Confidence 466999999999998873
No 7
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.98 E-value=4.6e-31 Score=263.12 Aligned_cols=234 Identities=20% Similarity=0.191 Sum_probs=165.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cccc------CCCCCceeeeccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------NPEKRTIIPTEYLG 244 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~------~~~~~~i~~~~~~g 244 (527)
||+|+|+ +||||||||+|+|||++||++|+|||+||+|+|++++..++|.... +.+. ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 4799999 7999999999999999999999999999999999988877643211 1110 11112344445679
Q ss_pred ceEEccCCCCCccccc-CCccHH-HHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHH
Q 009721 245 VKLVSFGFSGQGRAIM-RGPMVS-GVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 245 l~vl~~~~~~~~~~~~-~~~~~~-~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
++++|++......... +..... ..++.+......++||||||||++++....+ ....+.++|.+++|++|+..++.+
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g 159 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYA 159 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHH
Confidence 9999976332211110 010010 2233221110126799999999765432111 111123789999999999999999
Q ss_pred HHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCC
Q 009721 322 VAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (527)
Q Consensus 322 ~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 397 (527)
+.++++.++.. ++.+.|+|+|+.... ..++..+++.+.++.++++.||++..+.+|...|+|+.++.|
T Consensus 160 ~~~ll~~i~~~~~~~~l~i~giv~n~~~~~--------~~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~p 231 (274)
T PRK13235 160 ANNICKGILKYADAGGVRLGGLICNSRKVD--------NEREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYDP 231 (274)
T ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCCCC--------chHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEECC
Confidence 98888766543 456779999963211 123567888889998888999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 009721 398 CGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 398 ~s~~a~~~~~la~~i~~~ 415 (527)
+++++++|+++++++.++
T Consensus 232 ~s~~a~~y~~La~el~~~ 249 (274)
T PRK13235 232 THPQADEYRALARKIDEN 249 (274)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 8
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.98 E-value=1.8e-31 Score=268.26 Aligned_cols=245 Identities=19% Similarity=0.163 Sum_probs=178.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cccc---------CCCCCceeee
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTIIPT 240 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~---------~~~~~~i~~~ 240 (527)
.+++|+| +|||||||||+|+|||+.||++|+|||+||+|+|++++..+++.... +.+. ....+.+ ..
T Consensus 5 ~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i-~~ 82 (296)
T PRK13236 5 NIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVM-LT 82 (296)
T ss_pred CceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhh-ee
Confidence 4589999 68999999999999999999999999999999999999988875432 2111 1112223 34
Q ss_pred ccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-hhhhhhcCCCeEEEEeCCCcchH
Q 009721 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 241 ~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
...|++++|++...... ...+......++.+.....|++||||+|||++...... .....+.++|.+++|++|+..++
T Consensus 83 ~~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl 161 (296)
T PRK13236 83 GFRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAM 161 (296)
T ss_pred CCCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHH
Confidence 56799999987433221 12222222234555544456899999999965432111 11111347899999999999999
Q ss_pred HHHHHHHHHH----HcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 320 IDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 320 ~~~~~~~~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
.++.++.+.+ +..+.++.|+|+||. +... ..+..+++.+.++..+++.||++..+.+|...|+|+..+
T Consensus 162 ~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~--~~~~------~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv~~~ 233 (296)
T PRK13236 162 YAANNIARGILKYAHTGGVRLGGLICNSR--NVDR------EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEY 233 (296)
T ss_pred HHHHHHHHHHHHHhhCCCceeEEEEecCC--CCcc------hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCChhhc
Confidence 8887554433 344677899999983 2211 113578899999988889999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccccceeeec
Q 009721 396 DPCGEVANTFQDLGVCVVQQCAKIRQQVSTAVIYD 430 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~~~~~~~~~v~t~i~~d 430 (527)
.|+++++++|.++++++.++.+ ..+|++...+
T Consensus 234 ~p~s~~a~~y~~La~ell~~~~---~~~p~~~~~~ 265 (296)
T PRK13236 234 APDSNQGNEYRALAKKIINNDN---LTIPTPIEME 265 (296)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC---CCCCCCCCHH
Confidence 9999999999999999987553 3678775543
No 9
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=3.9e-31 Score=263.83 Aligned_cols=229 Identities=17% Similarity=0.183 Sum_probs=169.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCCCCCCccCCCCcc--cccc-------CCCCCceeeec
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLEM-------NPEKRTIIPTE 241 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~--~~~~-------~~~~~~i~~~~ 241 (527)
|+++|+|+ +||||||||+|+|||++||+ +|+|||+||+|+|++++..++|.... +.+. ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 67899999 89999999999999999997 69999999999999887766665422 1110 01123345555
Q ss_pred cCCceEEccCCCCCccccc-CCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhc------CCCeEEEEeCC
Q 009721 242 YLGVKLVSFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV------PLTAAVIVTTP 314 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~------a~d~viiV~~p 314 (527)
.+|++++|++......... ++......+.+.++.+. ++||||||||++.+. . ..+. ++|.+++|++|
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~---~--~al~~~~~~~aad~viIp~~p 153 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVV---C--GGFAMPIRDGKAQEVYIVASG 153 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCcee---e--ccccccchhccCceEEEeccc
Confidence 7899999987543221111 11111112444444443 789999999954322 1 1122 68999999999
Q ss_pred CcchHHHHHHHHHHH----HcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCC
Q 009721 315 QKLAFIDVAKGVRMF----SKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (527)
Q Consensus 315 ~~~s~~~~~~~~~~l----~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (527)
+..++.++.++++.+ +..++++.|+|+|+.. .. ..++..+++.+.++.+++..||++..+.+|...|+
T Consensus 154 ~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~--~~------~~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~ 225 (275)
T PRK13233 154 EMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRN--VD------GELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKK 225 (275)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC--CC------cHHHHHHHHHHHcCCceeeecCcchHHHHHHHcCC
Confidence 999999999887665 3456778999999732 11 11246788999999888899999999999999999
Q ss_pred ceEeeCCCCHHHHHHHHHHHHHHHH
Q 009721 391 PEVAADPCGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 391 pv~~~~p~s~~a~~~~~la~~i~~~ 415 (527)
|+.++.|+++++++|.++++++.++
T Consensus 226 pv~~~~~~s~~a~~y~~La~ell~~ 250 (275)
T PRK13233 226 TVVEFDPDCNQAKEYKELARKIIEN 250 (275)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999765
No 10
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.97 E-value=2.4e-31 Score=260.93 Aligned_cols=234 Identities=19% Similarity=0.246 Sum_probs=170.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc--------ccCCCCCceeeeccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 244 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~--------~~~~~~~~i~~~~~~g 244 (527)
|++|+|+|+||||||||+|+|||+.||++|+||++||+|+|++ ++..+|.+.... ......+.+.. ...|
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~-l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNL-LRLHFGMDWSVRDGWARALLNGEPWAAAAYR-SSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcch-HHHHhCCCCccCCcHHHHHhcCCChHHhHhh-cCCC
Confidence 5799999999999999999999999999999999999999974 555666543211 00111112222 3478
Q ss_pred ceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH-
Q 009721 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA- 323 (527)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~- 323 (527)
++++|++.................++++++.+.+..||||||||||+.+.....+ +.++|.+++|+.|+..++..+.
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976432211111111123456677776654457999999999988765544 6688999999999999999888
Q ss_pred HHHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCC-eEEeccCchhHHhcccCCCceEeeCCCCHH
Q 009721 324 KGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (527)
Q Consensus 324 ~~~~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 401 (527)
.+.++++..+.+ ..++|+|++.... ...++..+.+.+.++.+ +.+.||++..+.++...|+|+.++.|++++
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~~------~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~ 230 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPAR------QLSRDVRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQA 230 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcch------hhHHHHHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHH
Confidence 444555533322 3789999965322 12234556677888876 457799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009721 402 ANTFQDLGVCVVQQC 416 (527)
Q Consensus 402 a~~~~~la~~i~~~~ 416 (527)
+++|++++++|++++
T Consensus 231 ~~~~~~la~~~l~~~ 245 (246)
T TIGR03371 231 AHDIRTLAGWLLSKL 245 (246)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999875
No 11
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.97 E-value=3.4e-30 Score=256.46 Aligned_cols=231 Identities=17% Similarity=0.223 Sum_probs=174.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc----c----ccCCCCCceeee-cc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----L----EMNPEKRTIIPT-EY 242 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~----~----~~~~~~~~i~~~-~~ 242 (527)
|+++|+|+|+||||||||+|+|||++||++|+||++||+|+++++++.++|.+... . ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 67999999999999999999999999999999999999999988888888875321 1 111112223222 35
Q ss_pred CCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~ 322 (527)
+|++++|++.... ...+. ...+.++++.+.+..||||||||||+++...... +.++|.+++|++|+..++.++
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7999999775331 11111 1234555555443579999999999998765544 678899999999999999999
Q ss_pred HHHHHHHHcC-------CCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEe
Q 009721 323 AKGVRMFSKL-------KVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (527)
Q Consensus 323 ~~~~~~l~~~-------~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 394 (527)
.++++.+... ..+ ..++|+|++....... ......+++.+.+|.++++.||++..+.+|...|+|+.
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~- 228 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSR----GDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI- 228 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHhhhhh----cccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-
Confidence 9999987632 112 2588999965332110 01124678888999999999999999999999999998
Q ss_pred eCCCCHHHHHHHHHHHHHHH
Q 009721 395 ADPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 395 ~~p~s~~a~~~~~la~~i~~ 414 (527)
+.|+++.+++|++|+++|.+
T Consensus 229 ~~~~~~~~~~~~~la~~l~~ 248 (270)
T PRK10818 229 LDIEADAGKAYADTVDRLLG 248 (270)
T ss_pred eCCCCHHHHHHHHHHHHHhC
Confidence 67889999999999998764
No 12
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.97 E-value=3.3e-30 Score=256.42 Aligned_cols=234 Identities=19% Similarity=0.201 Sum_probs=168.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cccc------C--CCCCceeeecc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM------N--PEKRTIIPTEY 242 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~------~--~~~~~i~~~~~ 242 (527)
|++|+|. +||||||||+|+|||.+||++|+||++||+|+|++++..+++.... +.+. . ...+.+ ....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVI-FEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhhe-eecC
Confidence 5789999 6999999999999999999999999999999999887776553211 1100 0 122223 3346
Q ss_pred CCceEEccCCCCCcccccCCcc--HHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~ 319 (527)
.|++++|++............. ...+++. +..+. ++||||||||++++....+ ....+.++|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEE-LGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHh-cCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 7999999875432221111110 1112333 23333 6899999999775432111 1111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
.++.++++.+..+ +.++.++|.|+.. . ..+++..+++.+.++.++++.||++..+.+|...|+|+.++
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~------~~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~ 228 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRN--T------DREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEY 228 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCC--C------hhHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEe
Confidence 9998887766543 5677889988732 1 12235678888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 009721 396 DPCGEVANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~~~~~ 418 (527)
.|+++++++|+++++++.++...
T Consensus 229 ~p~~~aa~~~~~La~el~~~~~~ 251 (270)
T cd02040 229 DPESKQADEYRELARKIVENKLL 251 (270)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999876443
No 13
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.97 E-value=5.7e-30 Score=249.94 Aligned_cols=232 Identities=27% Similarity=0.326 Sum_probs=181.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHH-HHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc-------ccCCCCCceeeeccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-------EMNPEKRTIIPTEYL 243 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nL-A~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~-------~~~~~~~~i~~~~~~ 243 (527)
|+++|+|.|+||||||||+++|| |..++.+|++|++||+|+..++++.++|...... +.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 57899999999999999999999 5555567788899999999999999999876422 223334555555558
Q ss_pred CceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
|+++||++....+............++++. ..|||||||||+|++...+.. +..+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887766655555444455555553 677999999999999876654 5566999999999999999999
Q ss_pred HHHHHHHcCCCCEEE--EEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHH
Q 009721 324 KGVRMFSKLKVPCIA--VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (527)
Q Consensus 324 ~~~~~l~~~~~~~~g--vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 401 (527)
.+++.+...+....+ +|+||+......... .....+..+++ +.+..+|+++.+.++...|.|+..+.|++++
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~----~~~~~~~~~~~--~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~a 227 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDV----AALLIQVVKQV--PVLQVIPFDPEVRRALAEGKPIVLYSPNSKA 227 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccccchhHH----HHHHHHHHHhC--CceeEeccChHHHHHhhcCCcEEEeCCCCHH
Confidence 999999999998887 999998622221100 01223333333 3788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009721 402 ANTFQDLGVCVVQQC 416 (527)
Q Consensus 402 a~~~~~la~~i~~~~ 416 (527)
+++|.++|..+.+..
T Consensus 228 s~ai~~lA~~l~~~~ 242 (262)
T COG0455 228 SQAIKELAAKLAGLP 242 (262)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999988643
No 14
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.97 E-value=1.2e-29 Score=253.67 Aligned_cols=224 Identities=19% Similarity=0.147 Sum_probs=165.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc-cccc----------cCCCCCceeeeccCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE----------MNPEKRTIIPTEYLG 244 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~----------~~~~~~~i~~~~~~g 244 (527)
|+|++ ||||||||+|+|||++||++|+|||+||+|+|++.+..+.|... .+.+ .....+.+.+ ...|
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~-~~~~ 80 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYK-GYGG 80 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEe-CCCC
Confidence 88884 99999999999999999999999999999999987766655422 1110 0112233433 3679
Q ss_pred ceEEccCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHH
Q 009721 245 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 245 l~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~ 322 (527)
++++|++........ .........++.+ ... ++||||||||++++....+ ...+.++|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHHH
Confidence 999998765432221 1111112233332 222 4799999999887543222 122557899999999999999999
Q ss_pred HHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCC
Q 009721 323 AKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPC 398 (527)
Q Consensus 323 ~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~ 398 (527)
.++++.++.. +++..|+|+||+.. +...+++.+.++.+++..||++..+.+|...|+|++++.|+
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----------~~~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~ 225 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK-----------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES 225 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc-----------hhHHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCC
Confidence 9998877754 45678999999641 13466788889988899999999999999999999999999
Q ss_pred CH----HHHHHHHHHHHHHHHH
Q 009721 399 GE----VANTFQDLGVCVVQQC 416 (527)
Q Consensus 399 s~----~a~~~~~la~~i~~~~ 416 (527)
++ ++++|++|+++|.++.
T Consensus 226 s~~~~~~a~~y~~La~ell~~~ 247 (290)
T CHL00072 226 EPSLNYVCDYYLNIADQLLSQP 247 (290)
T ss_pred CcchhHHHHHHHHHHHHHHhCC
Confidence 98 5899999999997653
No 15
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.97 E-value=7.6e-30 Score=252.35 Aligned_cols=229 Identities=24% Similarity=0.359 Sum_probs=174.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc----cc----cCCCCCceee-eccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE----MNPEKRTIIP-TEYL 243 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~----~~----~~~~~~~i~~-~~~~ 243 (527)
+|+|+|+|+||||||||+|+|||..|+++|+||++||+|+++++++.++|.+... .+ .....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 4799999999999999999999999999999999999999988888888875321 00 0011112221 1346
Q ss_pred CceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
|++++|++..... .... ...+.++++.+. +.||||||||||+++...... +.++|.+++|++|+..++.++.
T Consensus 81 ~l~~l~~~~~~~~-~~~~----~~~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVT----PEQMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCC----HHHHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 8999997653221 1111 123555555554 689999999999998655433 5678999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHH
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 403 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~ 403 (527)
++++.++..+....++|+|++........ .....+++.+.++.++++.||++..+.+|...|+|+.++.+ +++++
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~ 227 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPEMVKKG----DMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGK 227 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCchhcccc----cccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHH
Confidence 99999998887678999999754321110 11236788888999999999999999999999999998755 89999
Q ss_pred HHHHHHHHHHH
Q 009721 404 TFQDLGVCVVQ 414 (527)
Q Consensus 404 ~~~~la~~i~~ 414 (527)
+|++|+++|..
T Consensus 228 ~~~~La~~l~~ 238 (261)
T TIGR01968 228 AFENIARRILG 238 (261)
T ss_pred HHHHHHHHHhc
Confidence 99999999864
No 16
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.97 E-value=4.1e-30 Score=258.23 Aligned_cols=233 Identities=17% Similarity=0.179 Sum_probs=168.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc--ccccc--------CCCCCceeeec
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEM--------NPEKRTIIPTE 241 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~--------~~~~~~i~~~~ 241 (527)
.|++|+|. +||||||||+++|||+.||++|+|||+||+|+|++++..+++... .+.+. ....+.+....
T Consensus 3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 35899997 999999999999999999999999999999999999876655322 11110 11112223345
Q ss_pred cCCceEEccCCCCCcccccCCccHHHHHH-HHHHhc-ccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcch
Q 009721 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTT-EWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLA 318 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~~~~~~~~~l~-~ll~~~-~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s 318 (527)
.+|+++||++...... ........++ ..++.. ..++||||||||++++....+ ......++|.+++|++|+..+
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6799999986433221 1111112223 233332 126899999999554321111 000012789999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEe
Q 009721 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (527)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 394 (527)
+.++.++++.+++. ++.+.|+|+|+.+.. ..++..+++.+.++.+++..||++..+.++...|+|+++
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~--------~~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~ 230 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQTD--------RELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIE 230 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCc--------hHHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEE
Confidence 99999998777654 466889999964311 123467888888998888899999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHHHHHHH
Q 009721 395 ADPCGEVANTFQDLGVCVVQQC 416 (527)
Q Consensus 395 ~~p~s~~a~~~~~la~~i~~~~ 416 (527)
+.|+++++++|.+|++++.++.
T Consensus 231 ~~p~s~aa~~y~~La~ell~~~ 252 (295)
T PRK13234 231 YAPDSKQAGEYRALAEKIHANS 252 (295)
T ss_pred ECCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998664
No 17
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.97 E-value=9.8e-30 Score=254.25 Aligned_cols=232 Identities=18% Similarity=0.162 Sum_probs=163.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc-cccc--------cCCCCCceeeeccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE--------MNPEKRTIIPTEYL 243 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~--------~~~~~~~i~~~~~~ 243 (527)
|++|+|. +||||||||+|+|||++||++|+|||+||+|+|++++.++.+... .+.+ .....+.+.+ ..+
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYE-GFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheee-CCC
Confidence 6799999 799999999999999999999999999999999988776644221 1000 0122334443 468
Q ss_pred CceEEccCCCCCcccccCCccH--HHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 009721 244 GVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
|++++|++.............. ...++. +..+.+.+||||||||++++....+ ....+.++|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 9999998754322111000000 011222 2122224799999999775432111 11124468999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++.++++.++.. +..+.|++.|+- ... ..++..+++++.++.++++.||++..+.+|...|+|+.++.
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~r-~~~-------~~~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~ 229 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNGR-SVI-------DAPDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA 229 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEecc-CCC-------chhHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence 999887766543 555677775531 110 01246788999999988999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 009721 397 PCGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~ 415 (527)
|.++++++|+++++++.++
T Consensus 230 p~~~~a~~y~~La~ell~~ 248 (279)
T PRK13230 230 PDSEISNIFRELAEAIYEN 248 (279)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999875
No 18
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=252.60 Aligned_cols=229 Identities=18% Similarity=0.161 Sum_probs=165.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCC-Cccccc----------cCCCCCceeee
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLLE----------MNPEKRTIIPT 240 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~-~~~~~~----------~~~~~~~i~~~ 240 (527)
|+++|+|. +||||||||+|+|||++||++|+|||+||+|||++.+.++.+. ...+.+ .....+.+. .
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~-~ 78 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY-E 78 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHhee-e
Confidence 67999998 7999999999999999999999999999999998766544321 111110 011122333 3
Q ss_pred ccCCceEEccCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009721 241 EYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (527)
Q Consensus 241 ~~~gl~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s 318 (527)
..+|++++|++........ .........++++ .+ +++||||||||+++.....+ ...+.++|.+++|++|+..+
T Consensus 79 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~s 154 (270)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFDS 154 (270)
T ss_pred CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchhh
Confidence 4589999998765432211 1111111223331 12 36899999999876543221 12255789999999999999
Q ss_pred HHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEe
Q 009721 319 FIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (527)
Q Consensus 319 ~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 394 (527)
+.++.++++.++. .++++.|+|+||+.. ....+++.+.++.+++..||++..+.+|...|+|+.+
T Consensus 155 l~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----------~~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~ 223 (270)
T PRK13185 155 IFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----------TDLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFE 223 (270)
T ss_pred HHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----------HHHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhh
Confidence 9999998887653 356678999999531 1346788888998888999999999999999999999
Q ss_pred eCCCC----HHHHHHHHHHHHHHHHHH
Q 009721 395 ADPCG----EVANTFQDLGVCVVQQCA 417 (527)
Q Consensus 395 ~~p~s----~~a~~~~~la~~i~~~~~ 417 (527)
+.|++ +++++|+++++++.++..
T Consensus 224 ~~~~~~~~~~aa~~~~~la~el~~~~~ 250 (270)
T PRK13185 224 MEETDPGLEEVQNEYLRLAEQLLAGPE 250 (270)
T ss_pred hCcCCccchHHHHHHHHHHHHHHhcCC
Confidence 98864 588999999999976543
No 19
>PRK10037 cell division protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=249.46 Aligned_cols=229 Identities=14% Similarity=0.167 Sum_probs=157.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--------ccccCCCCCceeeeccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 244 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--------~~~~~~~~~~i~~~~~~g 244 (527)
|++|+|.|.||||||||+|+|||+.||++|+|||+||+|+|++ +..++|.... +.......+.+.+. .+|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~-~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNL-LRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhh-HHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 5699999999999999999999999999999999999999974 4445554321 11111122233332 479
Q ss_pred ceEEccCCCCCc-ccccCC-ccHHHHHHHHHHhccc-CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009721 245 VKLVSFGFSGQG-RAIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~-~~~~~~l~~ll~~~~~-~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
+++||++..... ...... ......+...++.+.. +.||||||||||+.+..... .+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~~--al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTRQ--LLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHHH--HHHhCCEEEEEcCcCHHHH--
Confidence 999997521110 001000 0011234555555421 58999999999998865544 3678999999999987653
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHh---CCCeE-EeccCchhHHhcccCCCceEeeCC
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHL-FDLPIRPTLSASGDSGMPEVAADP 397 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l-~~IP~~~~i~~a~~~g~pv~~~~p 397 (527)
++..+......+.+++|++... .+..+++.+.+ +.+++ ..||.+..+.+|...|+|+.++.|
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~~----------~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~ 220 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRIG----------SQLQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRS 220 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCcc----------cHHHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCC
Confidence 3333332223456788986421 12344444443 44444 369999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhc
Q 009721 398 CGEVANTFQDLGVCVVQQCAKIRQ 421 (527)
Q Consensus 398 ~s~~a~~~~~la~~i~~~~~~~~~ 421 (527)
+++++++|+.+++++++.++.++.
T Consensus 221 ~s~aa~~~~~l~~el~~~~~~~~~ 244 (250)
T PRK10037 221 DSLAAEEILTLANWCLLHYSGLKT 244 (250)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876643
No 20
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.9e-29 Score=247.10 Aligned_cols=205 Identities=42% Similarity=0.632 Sum_probs=167.1
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--ccccCC---CCCceeeeccCC
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNP---EKRTIIPTEYLG 244 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~~~---~~~~i~~~~~~g 244 (527)
.+..++|+|+|+|||+||||+|+|||.+||++|+||++||+|.++++++.+||.++. +..... ....+......+
T Consensus 54 ~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 133 (265)
T COG0489 54 KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKV 133 (265)
T ss_pred cccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccce
Confidence 346789999999999999999999999999999999999999999999999998653 221111 122222222345
Q ss_pred ceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
+++++.+. ....|++++....+.+++..+.|+.||||||||||++++...++.+.. .|.+++|++|+.....++.+
T Consensus 134 lsi~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~-~~g~viVt~p~~~~~~~v~k 209 (265)
T COG0489 134 LSILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRI-PDGVVIVTTPGKTALEDVKK 209 (265)
T ss_pred EEEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhcc-CCeEEEEeCCccchHHHHHH
Confidence 55555443 667889999999999999999988899999999999999887776544 46999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHh
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA 384 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~ 384 (527)
.++++++.+.+++|+|.||.++.+.... .+..+.+.++++ ++++.+|.+..+.+
T Consensus 210 a~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~-~~~g~~p~~~~~~~ 263 (265)
T COG0489 210 AIDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG-PYLGSIPLDPSARE 263 (265)
T ss_pred HHHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc-cccccCCCChhhhh
Confidence 9999999999999999999887764321 356778888888 88999998876654
No 21
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.97 E-value=6.9e-30 Score=266.50 Aligned_cols=239 Identities=21% Similarity=0.200 Sum_probs=170.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc--------c-------ccCCCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 235 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~-------~~~~~~~ 235 (527)
..++||+|+|.||||||||+|+|||+.||++|+|||+||+|+|+ +++.++|..+.. . ......+
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~ 197 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD 197 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHH
Confidence 35689999999999999999999999999999999999999997 455566653311 0 0112234
Q ss_pred ceeeeccCCceEEccCCCCCcccc----------cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCC
Q 009721 236 TIIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 305 (527)
Q Consensus 236 ~i~~~~~~gl~vl~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~ 305 (527)
.+.++.++|++++|++......+. .........|++.++.+. ++||||||||||+++..+. ..+.++
T Consensus 198 ~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~t~--~al~aA 274 (405)
T PRK13869 198 VIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFLTL--SGLCAA 274 (405)
T ss_pred heeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHHHH--HHHHHc
Confidence 455667789999997754322111 011111234667776664 7899999999999986554 447889
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHH-------HcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-
Q 009721 306 TAAVIVTTPQKLAFIDVAKGVRMF-------SKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 373 (527)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l-------~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l- 373 (527)
|.+++|+.|+..++.++.++++++ ++. +...+++|+||++.. . ..+++..+.+.+.|+..++
T Consensus 275 d~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~--~----~~~~~~~~~l~~~~~~~vl~ 348 (405)
T PRK13869 275 TSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ--D----APQTKVAALLRNMFEDHVLT 348 (405)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC--C----cHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999888887632 222 234678999996432 2 2234567888888886554
Q ss_pred EeccCchhHHhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHH
Q 009721 374 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKI 419 (527)
Q Consensus 374 ~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~~ 419 (527)
..||.+..+.+|...|+|++++.|....++.|....+.+.+-..++
T Consensus 349 ~~I~~s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra~~~~~~~~~ei 394 (405)
T PRK13869 349 NPMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESLDAVNSEI 394 (405)
T ss_pred CcCcchHHHHhhHhcCCChhhcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999988655555555554444433333
No 22
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.97 E-value=2.5e-29 Score=249.41 Aligned_cols=234 Identities=20% Similarity=0.180 Sum_probs=168.8
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc-cc---cc--CCCCCceeeeccCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL---EM--NPEKRTIIPTEYLGV 245 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~---~~--~~~~~~i~~~~~~gl 245 (527)
.|++|+|. +||||||||+|+|||+.||+.| |||+||+|+|++.+..+++.... +. .. ....+.+....++|+
T Consensus 1 ~~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 78 (264)
T PRK13231 1 VMKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGI 78 (264)
T ss_pred CceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCe
Confidence 36899999 6999999999999999999999 99999999999877665553221 11 00 011122334456799
Q ss_pred eEEccCCCCCcccc-cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 246 KLVSFGFSGQGRAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 246 ~vl~~~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~-~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
+++|++........ .........+.+.+..+ +++||||||||+++.....+. .....++|.+++|++|+..++.++.
T Consensus 79 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~ 157 (264)
T PRK13231 79 LCVESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAAN 157 (264)
T ss_pred EEEEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHH
Confidence 99997643221111 01100111122233333 378999999997754211111 0001478999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHH
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVAN 403 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~ 403 (527)
++++.++.++....++|.|+.... . ..+..+++.+.++.+++..||++..+.+|...|+|+.++.|++++++
T Consensus 158 ~~~~~i~~~~~~~~~vv~~~~~~~--~------~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa~ 229 (264)
T PRK13231 158 NIARGIKKLKGKLGGIICNCRGID--N------EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQAS 229 (264)
T ss_pred HHHHHHHHcCCcceEEEEcCCCCc--c------HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHHH
Confidence 999999988777778888874311 1 22467888888998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 009721 404 TFQDLGVCVVQQC 416 (527)
Q Consensus 404 ~~~~la~~i~~~~ 416 (527)
+|.+++++|.++.
T Consensus 230 ~~~~la~el~~~~ 242 (264)
T PRK13231 230 VYRKLANNIMNNT 242 (264)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999764
No 23
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.97 E-value=5.1e-29 Score=248.60 Aligned_cols=231 Identities=21% Similarity=0.235 Sum_probs=164.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cc---cc-----CCCCCceeeeccC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EM-----NPEKRTIIPTEYL 243 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~-----~~~~~~i~~~~~~ 243 (527)
++|+|+ |||||||||+|+|||++||++|+||++||+|+|++++..+++.... +. .. ....+ +......
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELED-VIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHH-eeeeCCC
Confidence 479998 6999999999999999999999999999999999887776553322 11 10 11222 3344567
Q ss_pred CceEEccCCCCCcccc-cCCccH-HHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHH
Q 009721 244 GVKLVSFGFSGQGRAI-MRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~-~~~~~~-~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
|++++|++........ ...... ..+++.+ ..+. ++||||||||++......+ ......++|.+++|++|+..++.
T Consensus 79 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 79 GIRCVESGGPEPGVGCAGRGVITAINLLEEL-GAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred CEEEEeCCCCCccCCCccchhhhHHHHHHHh-hhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 9999997643322111 010100 1233332 2333 6899999999765421111 11112368999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++.++++.++. .+.++.++|.|+.. .. ...+..+++.+.++.++++.||++..+.+|...|+|+.++.
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~------~~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~ 228 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRN--VD------DEKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYD 228 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCC--Cc------hHHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeC
Confidence 98888765433 35667788888632 11 12245678888899888899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 009721 397 PCGEVANTFQDLGVCVVQQC 416 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~~ 416 (527)
|.++++++|+++++++.++.
T Consensus 229 p~s~~a~~~~~la~ell~~~ 248 (275)
T TIGR01287 229 PESEQANEYRELAKKIYENT 248 (275)
T ss_pred CCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999998764
No 24
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.96 E-value=4.2e-29 Score=248.28 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=163.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCC-ccccc---------c-CCCCCceeeecc
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLE---------M-NPEKRTIIPTEY 242 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~-~~~~~---------~-~~~~~~i~~~~~ 242 (527)
++|+|. +||||||||+|+|||++||++|+|||+||+|+|++++..+.+.. ..+.+ . ....+.+ ....
T Consensus 1 ~~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (268)
T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVI-YTGY 78 (268)
T ss_pred CEEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccccceecCCCCCcHHHHHHhccccccCCCHHHee-EeCC
Confidence 368888 89999999999999999999999999999999997665543321 11110 0 1112223 3445
Q ss_pred CCceEEccCCCCCccc--ccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 243 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
+|+++||++....... ..........++++ .. .++||||||||++++...... ..+.++|.+++|+.|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALF 154 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHH
Confidence 8999999775433211 11111112233332 12 368999999998766432211 225678999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++.++++.++. .++++.|+|+||+... +..+++.+.++.+++..||++..+.+|...|+|+.++.
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----------~~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~ 223 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----------DLIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEME 223 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----------HHHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhC
Confidence 99888877664 3577889999996432 24677788899999999999999999999999999998
Q ss_pred CCC----HHHHHHHHHHHHHHHHHH
Q 009721 397 PCG----EVANTFQDLGVCVVQQCA 417 (527)
Q Consensus 397 p~s----~~a~~~~~la~~i~~~~~ 417 (527)
|++ +++++|+++++++.++..
T Consensus 224 ~~~~~~~~~a~~~~~la~el~~~~~ 248 (268)
T TIGR01281 224 ESGPELAAVTQEYLRMAEYLLAGPE 248 (268)
T ss_pred cccccchHHHHHHHHHHHHHHhcCC
Confidence 765 467899999999876533
No 25
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.96 E-value=1.7e-28 Score=243.73 Aligned_cols=225 Identities=21% Similarity=0.178 Sum_probs=161.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCC-Ccccc----------ccCCCCCceeeecc
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP-ENRLL----------EMNPEKRTIIPTEY 242 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~-~~~~~----------~~~~~~~~i~~~~~ 242 (527)
++|+|. +||||||||+|+|||++||++|+|||+||+|+|++....+.+. ...+. ......+.+ ...+
T Consensus 1 ~~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (267)
T cd02032 1 MVLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGY 78 (267)
T ss_pred CEEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcceeccCCCCCCHHHHHHhccccccCCChhheE-EECC
Confidence 478999 6999999999999999999999999999999998655444221 11111 111122333 3456
Q ss_pred CCceEEccCCCCCcccc--cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 243 LGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
+|++++|++........ ........+++++ . . .++||||||||+++.....+ ...+.++|.+++|+.|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCCcccHH
Confidence 89999998754322111 1011112233332 1 2 36899999999887653321 1125678999999999999999
Q ss_pred HHHHHHHHHHc----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++.++++.++. .++++.|+|+||+... ...+++.+.++.+++..||++..+.+|...|+|+.++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~-----------~~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~ 223 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDKT-----------DLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMD 223 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCHH-----------HHHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhC
Confidence 99988877663 3667789999996521 24567778899888999999999999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHHH
Q 009721 397 PCGEV----ANTFQDLGVCVVQQ 415 (527)
Q Consensus 397 p~s~~----a~~~~~la~~i~~~ 415 (527)
|.++. +++|++|++++.++
T Consensus 224 ~~~~~a~e~a~~y~~La~~il~~ 246 (267)
T cd02032 224 ESDEELAYRCDYYLLIADQLLAG 246 (267)
T ss_pred cccccccHHHHHHHHHHHHHHhc
Confidence 88765 67899999988754
No 26
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=4.9e-28 Score=223.84 Aligned_cols=167 Identities=57% Similarity=0.993 Sum_probs=133.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
+|+|+|+||||||||+|+|||..||+.|+||++||+|+|++++++++
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997654430
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (527)
+++.....++.+++...+.+||||||||||+.++.......+..+|.+++|++|+..++.++.++++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01112234555555544479999999999998876654432357899999999999999999999999999999
Q ss_pred CEEEEEEecccccC--CCccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 335 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 335 ~~~gvV~N~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
++.|+|+||+...+ +.+....+..+..+++.+.++.++++.||+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~ 169 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence 99999999987532 12222234556889999999999999999874
No 27
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.9e-28 Score=242.34 Aligned_cols=238 Identities=23% Similarity=0.331 Sum_probs=171.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCCCCCCCccCCCCcc----cc---cc-CCCCCceeee-c
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR----LL---EM-NPEKRTIIPT-E 241 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~~~s~~~~lg~~~~----~~---~~-~~~~~~i~~~-~ 241 (527)
||++|+|+|.||||||||+|+|||.+|| ..|+|||+||+|||+ ++..++|.... .. .. .......... .
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVV 79 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhcccC
Confidence 5789999999999999999999999999 566999999999996 45555555432 10 10 0101111111 4
Q ss_pred cCCceEEccCCCCCc-ccc-cCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009721 242 YLGVKLVSFGFSGQG-RAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~-~~~-~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
.++++++|+...... ... .........++.++..+ .++||||||||||+.+....+ .+.++|.+++|+.|+..++
T Consensus 80 ~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~l~~n--al~asd~vlIP~~~~~~~~ 156 (259)
T COG1192 80 IEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGVLTLN--ALAAADHVLIPVQPEFLDL 156 (259)
T ss_pred CCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhHHHHH--HHHHcCeeEEecCchHHHH
Confidence 578999997654321 110 00122234455555433 379999999999999765544 4778899999999999999
Q ss_pred HHHHHHHHHHHcCC------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCC-eEEeccCchhHHhcccCCCce
Q 009721 320 IDVAKGVRMFSKLK------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIP-HLFDLPIRPTLSASGDSGMPE 392 (527)
Q Consensus 320 ~~~~~~~~~l~~~~------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~l~~IP~~~~i~~a~~~g~pv 392 (527)
.++..+++.+.... ....++++|+..... ....+..+.+.+.++.+ ....||.+..++++...|.|+
T Consensus 157 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~~ 230 (259)
T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRT------KLADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPL 230 (259)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCc------chHHHHHHHHHHHhccccccccCcccccHHhHHHcCCCc
Confidence 99988777665442 256789999854332 12235667777777644 346699999999999999999
Q ss_pred EeeCCCCHHHHHHHHHHHHHHHHHHHH
Q 009721 393 VAADPCGEVANTFQDLGVCVVQQCAKI 419 (527)
Q Consensus 393 ~~~~p~s~~a~~~~~la~~i~~~~~~~ 419 (527)
..+.++++.+++|.+++.++.+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~e~~~~~~~~ 257 (259)
T COG1192 231 YEYDPKSKAAEEYYELAKELLEELLKL 257 (259)
T ss_pred eecCCcchHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999887643
No 28
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.96 E-value=3.6e-28 Score=232.69 Aligned_cols=229 Identities=20% Similarity=0.219 Sum_probs=169.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc--------ccCCCCCceeeeccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIPTEYLG 244 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~--------~~~~~~~~i~~~~~~g 244 (527)
|++|+|.|.||||||||+++|||+.|++.|++|++||+||++ .+...||...... ......+.. ....+|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~-~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAA-YRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHh-hccCCC
Confidence 689999999999999999999999999999999999999987 7777777654311 111112222 233479
Q ss_pred ceEEccCCCCCcccc-c--CCccHHHHHHHHHHhcc-cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 245 VKLVSFGFSGQGRAI-M--RGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 245 l~vl~~~~~~~~~~~-~--~~~~~~~~l~~ll~~~~-~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
++++|+|........ + .... ...+.+.+..+. ...||+||||||||.+.....+ +..+|.+++|+.|+..+..
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~-~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~~ 155 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQD-PQWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASHA 155 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcC-HHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHHH
Confidence 999998855432211 0 0111 123344444443 4789999999999988665544 5578999999999999876
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCH
Q 009721 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGE 400 (527)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~ 400 (527)
.+.+. .+.. -..+|+|+++ ... .++++..+-+.+..+..+...|+.|+.+.||...++|+.+|+|.|.
T Consensus 156 ~L~q~-----~l~~-~~~~liNq~~--~~s----~l~~D~~~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~ 223 (243)
T PF06564_consen 156 RLHQR-----ALPA-GHRFLINQYD--PAS----QLQRDLLQVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQ 223 (243)
T ss_pred HHHHh-----cccC-CcEEEEeccC--ccc----hHHHHHHHHHHHhhccccceeeecchHHHHHHhcCCCccccCccCH
Confidence 55431 1111 2578999954 333 3556777777888887777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009721 401 VANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 401 ~a~~~~~la~~i~~~~~~ 418 (527)
++++|..||.+++..+..
T Consensus 224 Aa~D~~~LA~W~l~~~~~ 241 (243)
T PF06564_consen 224 AAEDIQTLANWCLSHLAG 241 (243)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999877653
No 29
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.96 E-value=3.7e-28 Score=253.47 Aligned_cols=238 Identities=21% Similarity=0.226 Sum_probs=167.9
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc--------c-------ccCCCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKR 235 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--------~-------~~~~~~~ 235 (527)
..+++|+|+|.||||||||+|+|||.+||++|+|||+||+|+|+ +++.++|..+.. . ......+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 180 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSE 180 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHh
Confidence 45689999999999999999999999999999999999999997 455666653321 0 0112234
Q ss_pred ceeeeccCCceEEccCCCCCcccc-----c-C----CccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCC
Q 009721 236 TIIPTEYLGVKLVSFGFSGQGRAI-----M-R----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL 305 (527)
Q Consensus 236 ~i~~~~~~gl~vl~~~~~~~~~~~-----~-~----~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~ 305 (527)
.+.++..+|++++|++......+. + . .......+...++.+. +.||||||||||+++..... .+.++
T Consensus 181 ~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~--al~aa 257 (387)
T TIGR03453 181 IIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTLS--ALCAA 257 (387)
T ss_pred hcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHHH--HHHHc
Confidence 455566789999997643211110 0 0 0111234666666654 78999999999998865544 47789
Q ss_pred CeEEEEeCCCcchHHHHHHHHHH-------HHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-
Q 009721 306 TAAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL- 373 (527)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~-------l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l- 373 (527)
|.+++|+.|+..++.++..+++. ++.. +...+++|+|++.... ...++..+.+.+.+|..++
T Consensus 258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~------~~~~~~~~~l~~~~~~~vl~ 331 (387)
T TIGR03453 258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPND------GPQAQMVAFLRSLFGDHVLT 331 (387)
T ss_pred CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCC------ccHHHHHHHHHHHhcccccc
Confidence 99999999998888776655443 3332 2446789999965332 1233566778888886655
Q ss_pred EeccCchhHHhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 009721 374 FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 374 ~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~ 418 (527)
..||.+..+.+|...|.|++++.|++..+++|....+++.+-..+
T Consensus 332 ~~I~~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~~~~~~~~~e 376 (387)
T TIGR03453 332 NPMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESLDAVNAE 376 (387)
T ss_pred ccccccHHHHhhhhcCCCcEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999876566666666555544333
No 30
>PHA02518 ParA-like protein; Provisional
Probab=99.96 E-value=5.3e-28 Score=231.51 Aligned_cols=204 Identities=22% Similarity=0.266 Sum_probs=149.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~ 253 (527)
++|+|+|.||||||||+|+|||++|+++|+||++||+|+|+++..++-.... +.++++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~------------------~~~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREE------------------GEPLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhccc------------------CCCCCchhh-
Confidence 4899999999999999999999999999999999999999977654311000 001122110
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-
Q 009721 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 332 (527)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~- 332 (527)
.+ ..+.+.+..+. ..||||||||||+.+...... +.++|.+++|+.|+..++..+.++++.++..
T Consensus 62 -------~~----~~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~~--l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MG----KSIRADLPKVA-SGYDYVVVDGAPQDSELARAA--LRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------cc----HHHHHHHHHHh-ccCCEEEEeCCCCccHHHHHH--HHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 01 12233333332 789999999999987665544 6688999999999999999988888777653
Q ss_pred ----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe-ccCchhHHhcccCCCceEeeCCCCHHHHHHHH
Q 009721 333 ----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD-LPIRPTLSASGDSGMPEVAADPCGEVANTFQD 407 (527)
Q Consensus 333 ----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~-IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~ 407 (527)
+.+..++|.|+....... .+ ...+..+.++.+++.. ++.+..+.++...|+++.++.|.++++++|.+
T Consensus 128 ~~~~~~~~~~iv~n~~~~~~~~------~~-~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~~~~ 200 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKNTQL------YR-EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQ 200 (211)
T ss_pred hhCCCCceEEEEEeccCCcchH------HH-HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHHHHH
Confidence 466778898985322111 11 2334444567776655 55567899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 009721 408 LGVCVVQQCA 417 (527)
Q Consensus 408 la~~i~~~~~ 417 (527)
+++++.++++
T Consensus 201 l~~ei~~~~~ 210 (211)
T PHA02518 201 LVKELFRGIS 210 (211)
T ss_pred HHHHHHHHhc
Confidence 9999987764
No 31
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.95 E-value=9.4e-28 Score=248.89 Aligned_cols=237 Identities=16% Similarity=0.166 Sum_probs=165.0
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe-CCCCCCCCccCCCCccc--------c----c-cCCCCCc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL--------L----E-MNPEKRT 236 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~-D~~~~s~~~~lg~~~~~--------~----~-~~~~~~~ 236 (527)
.+++||+|.|.||||||||+|+|||+.||++|+|||+||+ |+|++.+ .++|..+.. . . .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt-~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTAS-MYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchh-hhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 4578999999999999999999999999999999999996 9999654 455543211 0 0 0112344
Q ss_pred eeeeccCCceEEccCCCCCcccc-----c-CC---ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCe
Q 009721 237 IIPTEYLGVKLVSFGFSGQGRAI-----M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (527)
Q Consensus 237 i~~~~~~gl~vl~~~~~~~~~~~-----~-~~---~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~ 307 (527)
+.++.++|++++|++......+. . .+ ......++..++.+. ++||||||||||+++..... .+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~n--al~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTIN--VVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHHH--HHHHcCE
Confidence 56667789999997643221110 0 00 122345666776664 78999999999999866554 4778999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EeccC
Q 009721 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 378 (527)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~ 378 (527)
+++|+.|+..++.++.++++++..+ + .+.+.+++|+++ .+... ..+...+.+.+.||..++ ..||.
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~--~~~~~---~~~~~~~~l~~~~~~~vl~~~I~~ 334 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYS--NSNGS---QSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEec--CCCch---HHHHHHHHHHHHhccccccccCcc
Confidence 9999999999998888777666542 1 233568999954 32210 111245778888886544 45899
Q ss_pred chhHHhcccCCCceEeeCCCC----H----HHHHHHHHHHHHHHHH
Q 009721 379 RPTLSASGDSGMPEVAADPCG----E----VANTFQDLGVCVVQQC 416 (527)
Q Consensus 379 ~~~i~~a~~~g~pv~~~~p~s----~----~a~~~~~la~~i~~~~ 416 (527)
+..+.+|...+++++++.+.. + +.+.|..+.++|.+++
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~~i~~~~ 380 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAIDQRSSTGAWRNALSIWEPVCNEIFDRL 380 (388)
T ss_pred cchHhhhhhcCCCceeEccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998643 1 3444555555555443
No 32
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.95 E-value=3.2e-27 Score=244.33 Aligned_cols=235 Identities=18% Similarity=0.182 Sum_probs=164.9
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe-CCCCCCCCccCCCCcccc------------c-cCCCCCc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRLL------------E-MNPEKRT 236 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~-D~~~~s~~~~lg~~~~~~------------~-~~~~~~~ 236 (527)
+.++||+|+|.||||||||+|+|||+.||++|+|||+||+ |+|++. ..++|..+... . .......
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nl-t~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~ 182 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTA-SMYHGYVPDLHIHADDTLLPFYLGERDNAEYA 182 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCc-ccccCcCccccccccccHHHHHhCCCcchHhh
Confidence 3468999999999999999999999999999999999996 999964 45566532210 0 0112345
Q ss_pred eeeeccCCceEEccCCCCCccc--c---c-CC---ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCe
Q 009721 237 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (527)
Q Consensus 237 i~~~~~~gl~vl~~~~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~ 307 (527)
+.++.++|++++|++......+ . . .+ ......++..++.+. ++||||||||||+++....+ ++.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~n--AL~AAd~ 259 (387)
T PHA02519 183 IKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTIN--VVCAADV 259 (387)
T ss_pred eecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHHH--HHHHhCE
Confidence 6666789999999875321111 0 0 01 112345667776664 78999999999999976554 4778999
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcC-------C-CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EeccC
Q 009721 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPI 378 (527)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~ 378 (527)
+++|+.|+..++.++.++++++..+ + .+.+.+++||++ .+.. ...+...+.+.+.||..++ ..||.
T Consensus 260 vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~--~~~~---~~~~~i~~~l~~~~g~~vl~~~I~~ 334 (387)
T PHA02519 260 IVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYS--LTVG---NQSRWMEEQIRNTWGSMVLRQVVRV 334 (387)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeEC--CCCc---hHHHHHHHHHHHHhccccccccCcC
Confidence 9999999999998887776655321 1 234668999954 3211 1112356788889986554 45888
Q ss_pred chhHHhcccCCCceEeeCCCC-H-------HHHHHHHHHHHHHH
Q 009721 379 RPTLSASGDSGMPEVAADPCG-E-------VANTFQDLGVCVVQ 414 (527)
Q Consensus 379 ~~~i~~a~~~g~pv~~~~p~s-~-------~a~~~~~la~~i~~ 414 (527)
...+.+|...+++++++.+.+ . +.+.|..+.++|.+
T Consensus 335 s~~i~~a~~~~~ti~e~~~~~~~~~~~~~r~~~~~~~~~~ei~~ 378 (387)
T PHA02519 335 TDEVGKGQIKMRTVFEQAANQRSTLNAWRNAVAIWEPVCAEIFN 378 (387)
T ss_pred cchHhhchhcCCChhhCccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988665 2 34455555555554
No 33
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.95 E-value=8.9e-27 Score=216.99 Aligned_cols=179 Identities=30% Similarity=0.480 Sum_probs=144.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
+|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999987877765543210 00 0
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (527)
+.+++ .+ |||||||||+.+...... +..+|.+++|+.|+..++..+.++++.++..+.
T Consensus 57 --------------~~~~~----~~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL----AG--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc----cC--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00010 01 999999999987655443 567899999999999999999999999998888
Q ss_pred CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHHH
Q 009721 335 PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTF 405 (527)
Q Consensus 335 ~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~ 405 (527)
+..++|+|++...... ..+..+++.+.++.+++..||++..+.++...|+++.++.|+++++++|
T Consensus 115 ~~~~iv~N~~~~~~~~------~~~~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~ 179 (179)
T cd02036 115 KVVGVIVNRVRPDMVE------GGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred ceEEEEEeCCcccccc------hhhHHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence 8899999997543211 1234577888899999999999999999999999999999999887764
No 34
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.95 E-value=1.9e-26 Score=235.06 Aligned_cols=219 Identities=19% Similarity=0.224 Sum_probs=167.7
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc--c--ccC----CCC----Cce
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--L--EMN----PEK----RTI 237 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--~--~~~----~~~----~~i 237 (527)
...+++|+|+|+||||||||+|+|||+.|+++|+||++||+|+|+++++.+||.+... . ... ... ...
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDA 169 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHh
Confidence 3467999999999999999999999999999999999999999999998888875421 0 000 000 011
Q ss_pred eeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc
Q 009721 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (527)
Q Consensus 238 ~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~ 317 (527)
.+. .+|+++++.+.... .. .....++++++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..
T Consensus 170 ~~~-~~~l~vl~~~~~~~--~~----~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~~ 239 (322)
T TIGR03815 170 LPR-RGGLSVLSWGRAVG--AA----LPPAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADVR 239 (322)
T ss_pred CCC-cCCeEEEecCCCCc--CC----CCHHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcHH
Confidence 222 46899999765431 11 12344566666553 789999999999988764444 6688999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCC
Q 009721 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADP 397 (527)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p 397 (527)
++..+.++++.+...+. .+++|+|+... . ....+++++.+|.+++..||+++.+.++.+.|+|+. ..+
T Consensus 240 sl~~a~r~l~~l~~~~~-~~~lVv~~~~~---~-------~~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~ 307 (322)
T TIGR03815 240 AVAAAARVCPELGRRNP-DLRLVVRGPAP---A-------GLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASR 307 (322)
T ss_pred HHHHHHHHHHHHhhhCC-CeEEEEeCCCC---C-------CCCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCC
Confidence 99999999999887654 35777776321 1 124678999999999999999999999999999988 777
Q ss_pred CCHHHHHHHHHHH
Q 009721 398 CGEVANTFQDLGV 410 (527)
Q Consensus 398 ~s~~a~~~~~la~ 410 (527)
.++.++++..+.+
T Consensus 308 ~~~~~~~~~~~l~ 320 (322)
T TIGR03815 308 RRPLGRAAAEVLD 320 (322)
T ss_pred CCHHHHHHHHHHh
Confidence 8888888877654
No 35
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.94 E-value=2.5e-26 Score=220.32 Aligned_cols=193 Identities=20% Similarity=0.166 Sum_probs=136.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cc---------ccCCCCCceeeecc
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---------EMNPEKRTIIPTEY 242 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---------~~~~~~~~i~~~~~ 242 (527)
++|+|+ +||||||||+++|||.+||++|+|||+||+|+|++++..+++.... +. ......+ +.....
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELED-VIFEGF 78 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhH-eeEeCC
Confidence 479999 5999999999999999999999999999999999887777654321 11 1111122 333456
Q ss_pred CCceEEccCCCCCcccccCCcc--HHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhc--CCCeEEEEeCCCcch
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLA 318 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~--a~d~viiV~~p~~~s 318 (527)
+|++++|++............. ....++ .+..+ +++||||||||++......+ ...+. ++|.+++|++|+..+
T Consensus 79 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~s 155 (212)
T cd02117 79 GGVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMA 155 (212)
T ss_pred CCcEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHH
Confidence 8999999876543332211111 112333 34433 37899999999665431111 11233 789999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCc
Q 009721 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
+.++.++++.++.+ +.++.|+|+||+..+ .+.+..+++.+.++.+++..||++
T Consensus 156 l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~~~~~~~~~vl~~IP~d 212 (212)
T cd02117 156 LYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--------RETELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--------cHHHHHHHHHHHcCCCEEEecCCC
Confidence 99999888888765 556889999997533 122467899999999999999975
No 36
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.94 E-value=2.9e-25 Score=223.60 Aligned_cols=235 Identities=23% Similarity=0.325 Sum_probs=168.4
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cccc---CC-CC-----Cceee
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---NP-EK-----RTIIP 239 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~---~~-~~-----~~i~~ 239 (527)
+..++|+|+ +|||+||||+++|||.+||++|+||++||+|++++++..+||.... +.+. .. .. ..+..
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 456899998 6999999999999999999999999999999999999999885432 1111 00 00 11111
Q ss_pred eccCCceEEccCCCCCcccccCCccHHHHHH--HHHHh---cccCCCCEEEEeCCCCCC--hhhhhhhhhcCCCeEEEEe
Q 009721 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVT 312 (527)
Q Consensus 240 ~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~IIID~pp~~~--~~~~~~~~~~a~d~viiV~ 312 (527)
...|++++..+ ....|++......+. ++++. ..| +||||||||+++.. ...+... ...++.+++|+
T Consensus 108 -~~~gv~~~~~g----~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~-~~~ad~VIVVt 180 (329)
T cd02033 108 -KRDGVFAMELG----GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIA-RDMAQKVIVVG 180 (329)
T ss_pred -EeCCEEEecCC----CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhh-hcCCceEEEeC
Confidence 23577777533 234556655433222 34443 356 89999999976543 1112222 12367899999
Q ss_pred CCCcchHHH---HHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhccc
Q 009721 313 TPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGD 387 (527)
Q Consensus 313 ~p~~~s~~~---~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~ 387 (527)
+|+..++.+ +.+.++++++++ .+++|+|+||+.. .+..+++++.+++++++.||+++.+.++..
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~-----------~~~ie~~ae~lgi~vLg~IP~D~~V~~a~~ 249 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG-----------TGEAQAFAAHAGIPILAAIPADEELRRKSA 249 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC-----------cchHHHHHHHhCCCEEEECCCCHHHHHHHH
Confidence 999999965 556668888774 6789999999531 235788999999999999999999999999
Q ss_pred CCCceEeeCCCCHHHHHHHHHHHHHHHHHHHHhccccceeeec
Q 009721 388 SGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVSTAVIYD 430 (527)
Q Consensus 388 ~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~~~~~v~t~i~~d 430 (527)
+|+++ ..|+++++++|+++|+.|.+... .+++.+.++
T Consensus 250 ~g~~~--~~p~s~~a~~f~~LA~~I~~~~~----~~~~~~~~~ 286 (329)
T cd02033 250 AYQIV--GRPGTTWGPLFEQLATNVAEAPP----MRPKPLSQD 286 (329)
T ss_pred cCCee--cCCCCHHHHHHHHHHHHHHHhcC----CCCCCCCHH
Confidence 99853 56889999999999999987433 355554443
No 37
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.94 E-value=1.7e-25 Score=224.30 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=147.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc--cccccC----------CCCCceeeec
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 241 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~~~----------~~~~~i~~~~ 241 (527)
|+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|++++..++|... .+.+.. ...+.+....
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 589999 899999999999999999999999999999999999988876322 211110 0111122221
Q ss_pred cCCceEEccCCCCCcccccCCcc--HHHHHHHHHHhcc--cCCCCEEEEeCCCCC--ChhhhhhhhhcCCCeEEEEeCCC
Q 009721 242 YLGVKLVSFGFSGQGRAIMRGPM--VSGVINQLLTTTE--WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQ 315 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~~~~~--~~~~l~~ll~~~~--~~~yD~IIID~pp~~--~~~~~~~~~~~a~d~viiV~~p~ 315 (527)
..+.+.-.............+.. .......+++.+. ..+||||||||++++ +.. .......++|.+++|+.|+
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~~~yD~IliD~~~~~~~~g~-~~~~a~~~Ad~viVvt~~e 158 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDFDFVLMDFLGDVVCGGF-ATPLARSLAEEVIVIGSND 158 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhcccCCEEEEecCCCcccccc-ccchhhhhCCeEEEEecch
Confidence 11111000000000000000000 0011122222221 148999999996643 111 1111234689999999999
Q ss_pred cchHHHHHHHHH---HHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCC
Q 009721 316 KLAFIDVAKGVR---MFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (527)
Q Consensus 316 ~~s~~~~~~~~~---~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (527)
..++.++.++.+ ++++.+ ++++|+|+||+.. .+..+++.++++.++++.||+++.+.++. .+.
T Consensus 159 ~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~~ 226 (296)
T TIGR02016 159 RQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVGIPVLAAIPADEELRRKS-LAY 226 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcCCCeEEECCCCHHHHHHh-cCC
Confidence 999877665554 555653 6789999999532 13567889999999999999999999844 334
Q ss_pred ceEeeCCCCHHHHHHHHHHHHHHHHHHH
Q 009721 391 PEVAADPCGEVANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 391 pv~~~~p~s~~a~~~~~la~~i~~~~~~ 418 (527)
+.....+.+..++.|.++++.|.+++..
T Consensus 227 ~~~~~~~~~~~~~~f~~la~~i~~~~~~ 254 (296)
T TIGR02016 227 QIVGSHATPRFGKLFEELAGNVADAPPL 254 (296)
T ss_pred CeeecCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4444445666999999999999877553
No 38
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.93 E-value=1.5e-24 Score=205.97 Aligned_cols=225 Identities=25% Similarity=0.313 Sum_probs=161.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc---------cCCC----------
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE---------MNPE---------- 233 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~---------~~~~---------- 233 (527)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+..... .+..
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 46799999999999999999999999864 899999999999999999997643110 0000
Q ss_pred ---CCceeeeccCCceEEc--------------c----------C-----CCCCc------ccccCCccHHHHHHHHHHh
Q 009721 234 ---KRTIIPTEYLGVKLVS--------------F----------G-----FSGQG------RAIMRGPMVSGVINQLLTT 275 (527)
Q Consensus 234 ---~~~i~~~~~~gl~vl~--------------~----------~-----~~~~~------~~~~~~~~~~~~l~~ll~~ 275 (527)
...+.........+.| . | ....+ ......+...+++..+.+.
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 0111100000000000 0 0 00000 0000111223345545444
Q ss_pred cccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccc
Q 009721 276 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 276 ~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.. +.-|++|||+|||++-..+.. +..+|.+++|+.|+..++.+++++++..+.++++ .++|+||. +.
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~--~~------- 226 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRY--NL------- 226 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecC--CC-------
Confidence 43 336999999999999876654 6788999999999999999999999999999998 68999995 21
Q ss_pred cCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 009721 356 FGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~ 414 (527)
+....+++.++.|+++++.||++..+.++...|.|+.. ++++.+..+...+.++.+
T Consensus 227 -g~s~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 227 -GDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred -CchHHHHHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence 11258899999999999999999999999999999988 788888888877666543
No 39
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=99.93 E-value=2.8e-26 Score=188.01 Aligned_cols=88 Identities=34% Similarity=0.598 Sum_probs=76.1
Q ss_pred ceeeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCCCC-
Q 009721 425 TAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF- 503 (527)
Q Consensus 425 t~i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dgh- 503 (527)
|++++++..+.|.|.|.| |.++.|++.|||++||||+|+++.+++++++...+|.+|++.+++++|+|+|+|.|+|||
T Consensus 1 ~~i~l~~~~~~l~i~w~D-G~~~~~~~~~LRd~C~Ca~C~~~~~~~~~~~~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~ 79 (89)
T PF06155_consen 1 TEIKLDKDERHLEIEWSD-GQESRFPYEWLRDNCPCAECRGEETGQRRLDTADIPPDVRPKSIEPVGNYALRITWSDGHD 79 (89)
T ss_dssp -EEEEECCTTEEEEEETT-SEEEEEEHHHHHHT-SSSSTCSTTTTEE-----GCGTTTTEEEEEEETTTEEEEEETTSB-
T ss_pred CeEEEecCCCEEEEEECC-CCEEEECHHHHhccCCChhhccccccCccccccccCCCceEeEEEECCCCEEEEEECCCCc
Confidence 567888889999999999 999999999999999999999999999877888999999999999999999999999999
Q ss_pred cccCChHHHH
Q 009721 504 SQIAPYDQLQ 513 (527)
Q Consensus 504 ~s~y~~~~L~ 513 (527)
+|+|+|+|||
T Consensus 80 sgiY~~~~Lr 89 (89)
T PF06155_consen 80 SGIYPWEWLR 89 (89)
T ss_dssp --EEEHHHHH
T ss_pred eeEecHHHhC
Confidence 6899999997
No 40
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.8e-23 Score=194.38 Aligned_cols=219 Identities=21% Similarity=0.283 Sum_probs=166.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCCCCCCccCCCCccccc-------------c----------
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLE-------------M---------- 230 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~~-------------~---------- 230 (527)
+|+|+ ||||+||||+|+-||..|..+ |++||+||+|+ ..+++..||.+..... .
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 68877 999999999999978777766 49999999999 6788888888752000 0
Q ss_pred --CCCCCcee---eeccCCceEEccCCCC---CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhh
Q 009721 231 --NPEKRTII---PTEYLGVKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 302 (527)
Q Consensus 231 --~~~~~~i~---~~~~~gl~vl~~~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~ 302 (527)
......+. -...++++++..|... .+..+.- ..+++++++.+..++|||||+||-.|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~----~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM----NALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchH----HHHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 00001111 1123567888877543 3444433 3456666666655779999999999988665544 4
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhH
Q 009721 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (527)
Q Consensus 303 ~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (527)
-.+|.+++|+.|+..|+..+.++.++.++++++.+.+|+|++... ...+.+.....+.++++.||+|+.+
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~----------e~~~~~~~~~~~~~vlg~iP~d~~v 223 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE----------EELLRELAEELGLEVLGVIPYDPEV 223 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch----------hHHHHhhhhccCCeEEEEccCCHHH
Confidence 467999999999999999999999999999999999999997532 1356677788899999999999999
Q ss_pred HhcccCCCceEeeCCCCHHHHHHHHHHHHHHH
Q 009721 383 SASGDSGMPEVAADPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 383 ~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~ 414 (527)
.++-..|.|+.... .+.++++++++.+.+
T Consensus 224 ~~~dl~G~pl~~~~---~v~~~i~~I~~~l~~ 252 (255)
T COG3640 224 VEADLKGEPLNEEP---EVLKEIEEIAERLIK 252 (255)
T ss_pred HhccccCCccccch---hhhHHHHHHHHHHHh
Confidence 99999999998753 677888888877764
No 41
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.91 E-value=5.2e-24 Score=205.86 Aligned_cols=205 Identities=18% Similarity=0.220 Sum_probs=133.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCC-ceEEccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLG-VKLVSFG 251 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~g-l~vl~~~ 251 (527)
|++|+|.|.||||||||+|+|||..|+++|+||++||+|+|++...++-.... .. .++. .....
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~---------~~----~~~~~~~~~~-- 65 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALR---------SN----TWDPACEVYA-- 65 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhcc---------cc----CCCccceecC--
Confidence 57999999999999999999999999999999999999999976544311100 00 0000 00000
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (527)
......++..++...++.||||||||||+.+.....+ +.++|.+++|+.|+..++..+.++++.+.+
T Consensus 66 -----------~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~ 132 (231)
T PRK13849 66 -----------ADELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred -----------CCHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHH
Confidence 0011234555544434689999999999998665543 668899999999999999888877765543
Q ss_pred ------CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCC--HHH-
Q 009721 332 ------LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCG--EVA- 402 (527)
Q Consensus 332 ------~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s--~~a- 402 (527)
.+++ ..+|+||+....... ..+..+++.+.++ .+-..|+.+..+.++...|.+.....+.+ +..
T Consensus 133 ~~~~~~~~l~-~~iv~~~~~~~~~~~-----~~~~~~~~~~~~~-vl~t~I~~r~~~~~a~~~G~~~~~~~~~~~~~~~~ 205 (231)
T PRK13849 133 LLLSENLAIP-TAILRQRVPVGRLTT-----SQRAMSDMLESLP-VVDSPMHERDAFAAMKERGMLHLTLLNLSTDPTMR 205 (231)
T ss_pred HHHHhCCCCC-eEEEEEecccccCCH-----HHHHHHHHHhcCC-CCCccccchHHHHHHHhcCCcccchhhccccHHHH
Confidence 2344 459999975322111 1123344444333 23345899999999999999776533332 222
Q ss_pred HHHHHHHHHH
Q 009721 403 NTFQDLGVCV 412 (527)
Q Consensus 403 ~~~~~la~~i 412 (527)
....++..++
T Consensus 206 ~~~~~~~~~~ 215 (231)
T PRK13849 206 LLERNLRIAM 215 (231)
T ss_pred HHHHhHHHHH
Confidence 3455555544
No 42
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.91 E-value=8.5e-24 Score=197.34 Aligned_cols=178 Identities=27% Similarity=0.339 Sum_probs=123.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
+|+|+|+|||+||||+|+|||.+| +||++||+|+++++++.++|.+......... .......++..+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIV--GGKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccccee--cCCceEEchhhhccccch-
Confidence 389999999999999999999999 7999999999999999999987542110000 000000111111111100
Q ss_pred CcccccCCccHHHHHHHHH-HhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 009721 255 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (527)
+... ..+.+.+ ....++.||||||||||+.++..... +..+|.+++|+.|+..++.++.+.++.+++.+
T Consensus 74 -------~~~~-~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GKLV-TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HHHH-HHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 1111 1222221 11224799999999999998755443 56789999999999999999999999999888
Q ss_pred CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecc
Q 009721 334 VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (527)
Q Consensus 334 ~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (527)
.+ +++|+|++...... ....+++.+.+|.++++.||
T Consensus 144 ~~-~~vV~N~~~~~~~~-------~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 144 IP-VGVVINKYDLNDEI-------AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred CC-EEEEEeCCCCCcch-------HHHHHHHHHHcCCCeEEeCC
Confidence 77 58999997543211 13456778888999999987
No 43
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.91 E-value=1.4e-23 Score=200.12 Aligned_cols=170 Identities=21% Similarity=0.294 Sum_probs=126.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---ccc----cCCCCCceeeeccCCc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGV 245 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~~----~~~~~~~i~~~~~~gl 245 (527)
+|+|+|+|+|||+||||+++|||..||++|+||++||+|++++++..+++.... +.. .....+.+.....+|+
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 789999999999999999999999999999999999999999988777765441 111 1112233433444799
Q ss_pred eEEccCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
+++|.+...... ..+.. ..++++++.+. ..||||||||||......... ....+|.+++|+.|+..+...+.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~----~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~-~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQS----SNFKTLIETLR-KYFDYIIIDTPPIGTVTDAAI-IARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHHH-HHHhCCeEEEEEECCCCCHHHHHH
Confidence 999977543221 22222 33555555553 789999999999432111111 123479999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccC
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~ 348 (527)
.++.+++.+.+++|+|+|++....
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCccccc
Confidence 999999999999999999976543
No 44
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.91 E-value=1.6e-23 Score=200.12 Aligned_cols=164 Identities=24% Similarity=0.271 Sum_probs=122.6
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCCCCCCccCCCCcc--ccc----cC-CCCCceeeecc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE----MN-PEKRTIIPTEY 242 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~--~~~----~~-~~~~~i~~~~~ 242 (527)
+.+++|+|+|+|||+||||+|+|||++||+ .|+|||+||+|++++.++.+++.+.. +.. .. ...+.+.....
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~ 112 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNI 112 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCC
Confidence 457899999999999999999999999997 69999999999999888888876543 111 11 12233344445
Q ss_pred CCceEEccCCCCCccc-ccCCccHHHHHHHHHHhcccCCC--CEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009721 243 LGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~y--D~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
++++++|.+....... .... ..+.++++.+. .+| |||||||||+.+....... ...+|.+++|+.++..+.
T Consensus 113 ~~l~vl~~g~~~~~~~~~~~~----~~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l-~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 113 GRLSLLPAGRRHPNPTELLAS----QRMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL-ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CCEEEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH-HHhCCEEEEEEECCCCCH
Confidence 7999999876543321 1122 34555555543 566 9999999999864322111 335799999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEe
Q 009721 320 IDVAKGVRMFSKLKVPCIAVVEN 342 (527)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N 342 (527)
.++.+.++.++ +.+++|+|+|
T Consensus 187 ~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999998 6788999998
No 45
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2e-22 Score=186.11 Aligned_cols=240 Identities=22% Similarity=0.227 Sum_probs=176.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc--cccc--------cCCCCCceeeecc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 242 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~--~~~~--------~~~~~~~i~~~~~ 242 (527)
|+.|||+ +|||.||||++.|+|.+||+.|+||++|-+||.+.++..++|... .+.+ .....+.+....+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 4689999 999999999999999999999999999999999999888888332 1111 1233456677778
Q ss_pred CCceEEccCCCCCcccccCCccHHHHHHHHHHhcc-cCCCCEEEEeCCCCCC--hhhhhhhhhcCCCeEEEEeCCCcchH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~IIID~pp~~~--~~~~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
.|++.+.+|-+..+.-+. +..+...++.+-+.-. ....||||+|.....- -..+.+. ---+|.+.+|+.-+.+++
T Consensus 80 ~Gv~CVEsGGPepGvGCA-GRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiR-eg~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVGCA-GRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIR-EGYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCCcc-cchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehh-cccCcEEEEEecCchHHH
Confidence 899999877655444332 2223333333322211 1346999999954221 0111111 124799999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
..+.+..+-+.++ ++++-|+|.|.-..+ ...+.++.+.+.+|.++++.||++..+.+|...|+++.++
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~--------~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~ 229 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVD--------RERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY 229 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCcc--------cHHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence 9988776655543 467889999973322 1235789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhccccce
Q 009721 396 DPCGEVANTFQDLGVCVVQQCAKIRQQVSTA 426 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~~~~~~~~~v~t~ 426 (527)
+|+|..+..|++||+.|.+.-. ..+|++
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n~~---~vvp~p 257 (278)
T COG1348 230 APDSNQAEEYRELAKKILENEK---GVVPTP 257 (278)
T ss_pred CcchhHHHHHHHHHHHHHhCCC---CccCCC
Confidence 9999999999999999986543 235554
No 46
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.90 E-value=7.8e-23 Score=203.97 Aligned_cols=165 Identities=19% Similarity=0.266 Sum_probs=124.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cc---ccCCCCCceee-eccCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIP-TEYLGV 245 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~~~~~~~i~~-~~~~gl 245 (527)
..++|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++.++.+++.+.. +. ......+.+.. ...+|+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 3579999999999999999999999999999999999999999988888776532 11 11112223322 234799
Q ss_pred eEEccCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh-hhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~-~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
+++|++...... ..+..+ .+..+++.+. +.||||||||||..... ...+ ...+|.+++|+.++..+..++.
T Consensus 182 ~~lp~g~~~~~~~~~~~~~----~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~--~~~~d~vilV~~~~~t~~~~~~ 254 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARP----AFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV--ATRARGTLIVSRVNETRLHELT 254 (274)
T ss_pred EEEeCcCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCcccccHHHHH--HHhCCeEEEEEECCCCCHHHHH
Confidence 999988654322 233322 3455555553 78999999999975422 1222 3357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEec
Q 009721 324 KGVRMFSKLKVPCIAVVENM 343 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~ 343 (527)
+.++.+++.+.+++|+|+|+
T Consensus 255 ~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 255 SLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999995
No 47
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.89 E-value=1.8e-22 Score=192.69 Aligned_cols=241 Identities=18% Similarity=0.232 Sum_probs=157.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cccc--------CCCCCceeeeccC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM--------NPEKRTIIPTEYL 243 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~~--------~~~~~~i~~~~~~ 243 (527)
|.|+|+ ||||.||||++.||+.+||++|+||+.|.+||.+.++..+++.... +.+. ....+.+....+.
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 479999 9999999999999999999999999999999999888777665432 1111 1112344555677
Q ss_pred CceEEccCCCCCcccccCCccHHHHHHHHHHhc-ccCCCCEEEEeCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTT-EWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~yD~IIID~pp~~--~~~~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
|+..+.+|-+..+..+. +..+...++.+-+.- -..+||||+.|.-... +-..+.+. .-.++.+++|+.-+.+|+.
T Consensus 80 gi~CvEsGGPePGvGCa-GRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir-~g~a~evyIVtSge~msly 157 (273)
T PF00142_consen 80 GILCVESGGPEPGVGCA-GRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIR-EGYAQEVYIVTSGEFMSLY 157 (273)
T ss_dssp GEEEEE---SCTTSSBH-HHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHH-TTS-SEEEEEEBSSHHHHH
T ss_pred CceeeccCCCccccccc-ccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhh-hccCCEEEEEecCcHHHHH
Confidence 88998877554332221 122222233222211 1256999999984422 11112221 1246999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
.+.++.+.++++ +.++.|+|.|.-... ...+.+++++++.|.++++.||++..+.++...++++++++
T Consensus 158 AANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--------~e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~ 229 (273)
T PF00142_consen 158 AANNICKAIKNFADRGGARLGGIICNSRNVD--------DEEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAA 229 (273)
T ss_dssp HHHHHHHHHHHHCTTSS-EEEEEEEE-SSST--------THHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCCCC--------CchHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeC
Confidence 999887777655 356889999963211 12357899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccccceee
Q 009721 397 PCGEVANTFQDLGVCVVQQCAKIRQQVSTAVI 428 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~~~~~~~~v~t~i~ 428 (527)
|+++.+..|++||+.|.+.-. ..+|++++
T Consensus 230 P~s~~a~~yr~LA~~I~~~~~---~~~P~PL~ 258 (273)
T PF00142_consen 230 PDSEQAQEYRELARKILENPE---PVIPKPLS 258 (273)
T ss_dssp TTSHHHHHHHHHHHHHHH-------B------
T ss_pred CCcHHHHHHHHHHHHHHhCCC---CCCCCCCC
Confidence 999999999999999987642 23555543
No 48
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.88 E-value=1.9e-22 Score=190.40 Aligned_cols=190 Identities=24% Similarity=0.311 Sum_probs=123.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~~ 255 (527)
|+|+|+|||+||||+|++||..|+++|+||++||+|++++.+..+++..+..... ....... +......
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~ 69 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREG---LENANAI--------LKNFESQ 69 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTS---SHGHHCH--------HESCCHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhcccc---ceehhhh--------hhccchh
Confidence 7899999999999999999999999999999999999998887776551100000 0000000 0000000
Q ss_pred ccccc-CCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-
Q 009721 256 GRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK- 333 (527)
Q Consensus 256 ~~~~~-~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~- 333 (527)
....- .+ .....++++++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++.++.++++.++..+
T Consensus 70 ~~~~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~ 146 (195)
T PF01656_consen 70 DIYQGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLGK 146 (195)
T ss_dssp HHHHHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTH
T ss_pred hhhhhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhcc
Confidence 00000 00 223456666666443459999999999998775443 66889999999999999999999999999887
Q ss_pred -CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCe--EEeccCchhHHh
Q 009721 334 -VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPH--LFDLPIRPTLSA 384 (527)
Q Consensus 334 -~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--l~~IP~~~~i~~ 384 (527)
.+..++|+||+....... .....+.....++.+. -+.||++..+.+
T Consensus 147 ~~~~~~vv~N~v~~~~~~~-----~~~~~~~~~~~~~~~~vl~~~Ip~~~~v~~ 195 (195)
T PF01656_consen 147 KLKIIGVVINRVDPGNESK-----LQEEIEEIERELYVPVVLPGVIPYSEAVSE 195 (195)
T ss_dssp TEEEEEEEEEEETSCCHHH-----HHHHHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred ccceEEEEEeeeCCCccch-----HHHHHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence 457899999964332111 0112333344444332 277999888764
No 49
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.85 E-value=5e-21 Score=216.52 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=130.3
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~g 244 (527)
...++|+|+|.|||+||||+|+|||..||+.|+|||+||+|+++++++.+||.... +.......+.+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 34689999999999999999999999999999999999999999888888876533 111122223344455689
Q ss_pred ceEEccCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
++++|++..... ...+..+ .+.++++.+. +.||||||||||..+....... ...+|.+++|+.++..+...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~----~~~~~l~~l~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASP----AMFSLVIHAR-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccH----HHHHHHHHHH-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 999998854322 2233333 3444555443 7899999999998764433221 2347999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (527)
+.++.++..+.+++|+|+|++....
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~ 722 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPND 722 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhh
Confidence 9999999999999999999976443
No 50
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.85 E-value=2.1e-21 Score=156.15 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=87.9
Q ss_pred cccceeeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCC
Q 009721 422 QVSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPD 501 (527)
Q Consensus 422 ~v~t~i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~D 501 (527)
..|+.+...+..+.|.+.|.| |..+.++++.||..||||+|+++..+|+.+..++ .+|.+..|+++|||||+|.|+|
T Consensus 3 ~~P~~lrvsk~r~~L~l~f~d-g~~~~L~ae~LRv~sPsAEvqghgp~q~v~v~gk--r~V~i~~i~p~GnYavri~FdD 79 (120)
T COG3536 3 QWPTELRVSKDRKVLSLTFAD-GAPFRLPAEFLRVLSPSAEVQGHGPGQRVLVPGK--RNVQIRDIEPVGNYAVRILFDD 79 (120)
T ss_pred CCCceeEEeccCcEEEEEeCC-CCcccCCHHHHHhcCchHHhcccCCCCceeeecc--ccceEEEeEecCceEEEEEecC
Confidence 468888899999999999999 9999999999999999999999999999998877 7899999999999999999999
Q ss_pred CC-cccCChHHHHhchh
Q 009721 502 GF-SQIAPYDQLQTMER 517 (527)
Q Consensus 502 gh-~s~y~~~~L~~~~~ 517 (527)
|| +|||+|+||++|+.
T Consensus 80 gHDsGiy~W~YL~~lg~ 96 (120)
T COG3536 80 GHDSGIYTWAYLHELGE 96 (120)
T ss_pred CcccCcccHHHHHHHhh
Confidence 99 99999999999964
No 51
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.84 E-value=4e-21 Score=188.96 Aligned_cols=203 Identities=18% Similarity=0.189 Sum_probs=127.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc----ccccCCC--------CCceeeeccC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LLEMNPE--------KRTIIPTEYL 243 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~----~~~~~~~--------~~~i~~~~~~ 243 (527)
|.++++|||+||||+|+|+|..+|+.|+|||+||+|+++ +++.+|+.+-. ....... ...+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~-sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH-SLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc-cHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 566779999999999999999999999999999999985 77777776511 0000000 0000000001
Q ss_pred CceEEccCCCCCc-----cc--ccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--hh----------hhhhcC
Q 009721 244 GVKLVSFGFSGQG-----RA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--LT----------LCQVVP 304 (527)
Q Consensus 244 gl~vl~~~~~~~~-----~~--~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~~----------~~~~~a 304 (527)
.++.+..+..... .. ...+......+..+.+.+.+.+||+|||||||. +... +. ......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPt-g~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPT-GHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc-HHHHHHHHhHHHHHHHHHHhcCCc
Confidence 1122221100000 00 112222223344444444457899999999994 3221 11 111112
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC-Cccc----cccCCchHHHHHHHhCCCeEEeccCc
Q 009721 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD-GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~-~~~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
.+.+++|++|+..++.++.+.++.++..++++.|+|+||+..... ...+ ...++..++++.+.|+...+..+|+.
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i~~vp~~ 239 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVAKLPLL 239 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccccCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEeecC
Confidence 457899999999999999999999999999999999999876443 1111 12345567888888877677788864
Q ss_pred h
Q 009721 380 P 380 (527)
Q Consensus 380 ~ 380 (527)
+
T Consensus 240 ~ 240 (254)
T cd00550 240 P 240 (254)
T ss_pred C
Confidence 3
No 52
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.83 E-value=7.6e-20 Score=155.39 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=91.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~ 253 (527)
+|+++|+|||+||||++.|||..+++. |++|+++|+|+|.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999753
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC
Q 009721 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (527)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (527)
|||||||||+++...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998765543 56789999999999999999999999998877
Q ss_pred CC---EEEEEEec
Q 009721 334 VP---CIAVVENM 343 (527)
Q Consensus 334 ~~---~~gvV~N~ 343 (527)
.+ .+.+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 54 78889886
No 53
>PRK11519 tyrosine kinase; Provisional
Probab=99.82 E-value=1.1e-19 Score=203.31 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=130.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~gl 245 (527)
..++|+|+|.+||+||||+|.|||..||+.|+|||+||+|+++++++.++|.... +.+.....+.+.....+|+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4579999999999999999999999999999999999999999998888876543 1112223345555666899
Q ss_pred eEEccCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
++||+|...... +.+. ...+.++++.+. .+||||||||||.+....... ....+|.+++|+.++......+..
T Consensus 605 ~~lp~g~~~~~~~ell~----s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~-l~~~~d~~l~Vvr~~~t~~~~~~~ 678 (719)
T PRK11519 605 DLIPRGQVPPNPSELLM----SERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-VGRHVGTTLMVARYAVNTLKEVET 678 (719)
T ss_pred EEEeCCCCCCCHHHHhh----HHHHHHHHHHHH-hcCCEEEEeCCCcccchHHHH-HHHHCCeEEEEEeCCCCCHHHHHH
Confidence 999987543322 2222 345666666664 799999999999654221111 123569999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEeccc
Q 009721 325 GVRMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~ 345 (527)
.++.++..+.+++|+|+|++.
T Consensus 679 ~~~~l~~~~~~~~G~VlN~v~ 699 (719)
T PRK11519 679 SLSRFEQNGIPVKGVILNSIF 699 (719)
T ss_pred HHHHHHhCCCCeEEEEEeCCc
Confidence 999999999999999999974
No 54
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.82 E-value=1.2e-19 Score=203.39 Aligned_cols=169 Identities=17% Similarity=0.170 Sum_probs=129.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~gl 245 (527)
..++|+|+|.+||+||||+|+|||.+||..|+|||+||+|++++.++.+++.... +.+.....+.+.....+|+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 4579999999999999999999999999999999999999999988887776532 1111222344555556799
Q ss_pred eEEccCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 246 ~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
++||+|..... .+.+.. ..+.++++.+. ..||||||||||.......... ...+|.+++|+.++..+...+.+
T Consensus 610 ~vl~~g~~~~~p~ell~~----~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~~ 683 (726)
T PRK09841 610 DVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVSL 683 (726)
T ss_pred EEEeCCCCCCCHHHHhCc----HHHHHHHHHHH-hcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHHH
Confidence 99998754322 222222 34566666554 7899999999997653222221 23569999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccc
Q 009721 325 GVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.++.+++.+.+++|+|+|++..
T Consensus 684 ~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 684 SMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred HHHHHHhCCCceEEEEEeCccc
Confidence 9999999999999999999753
No 55
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.82 E-value=1.6e-19 Score=161.26 Aligned_cols=108 Identities=36% Similarity=0.528 Sum_probs=93.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
+|+|+|+|||+||||++.++|..++++|++|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999886531
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-C
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 333 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~-~ 333 (527)
||||||||||+.+.....+ +..+|.+++|+.|+..++.++.+.++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999988776544 5678999999999999999999988887543 4
Q ss_pred CCEEEEEEecccc
Q 009721 334 VPCIAVVENMCHF 346 (527)
Q Consensus 334 ~~~~gvV~N~~~~ 346 (527)
...+++|+||+..
T Consensus 97 ~~~~~lVvN~~~~ 109 (139)
T cd02038 97 VLNFRVVVNRAES 109 (139)
T ss_pred CCCEEEEEeCCCC
Confidence 5568899999753
No 56
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.80 E-value=1.5e-18 Score=173.45 Aligned_cols=229 Identities=23% Similarity=0.280 Sum_probs=177.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCCCCCCccCCCCcccc--c----cCC----CCCceee
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLL--E----MNP----EKRTIIP 239 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~~~--~----~~~----~~~~i~~ 239 (527)
...++++|.+.|||+|-||+|.|+|+.++. .++.|+++|+|.++++....++.+.... + ... ..+...-
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~ 181 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLT 181 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHh
Confidence 345899999999999999999999999995 5899999999999988777777664311 1 000 1122223
Q ss_pred eccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009721 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 240 ~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
...+++.+++..........+... .+..+++.+ +..||+||+|.|-...++...+ +..+|.+++|++|+..++
T Consensus 182 ~~~~~l~ll~a~~~~~~~~d~~~~----~~~~Ll~~~-~~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~sl 254 (366)
T COG4963 182 RLASGLKLLAAPTELAKNYDLKTG----AVERLLDLL-RGSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLASL 254 (366)
T ss_pred ccCCCceeecCCcchhhhcccccc----hHHHHHHHh-hccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHHHH
Confidence 345788999866544333333222 344444444 3799999999997777776665 668899999999999999
Q ss_pred HHHHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchh-HHhcccCCCceEeeC
Q 009721 320 IDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT-LSASGDSGMPEVAAD 396 (527)
Q Consensus 320 ~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~-i~~a~~~g~pv~~~~ 396 (527)
+.++++++.+++++ .+....|+|++...... ..+++.+.++++.+..+|+|+. +..|.+.|+++.+.+
T Consensus 255 R~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---------~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~~ 325 (366)
T COG4963 255 RNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---------EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEVD 325 (366)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---------CHHHHHHHhCCchhccccCCchhhhhhhccCccccccC
Confidence 99999999999875 34678899996543322 2789999999999999999985 678999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 009721 397 PCGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~ 415 (527)
|.+++++++..++..+..+
T Consensus 326 ~~~~~~k~l~~la~~l~~~ 344 (366)
T COG4963 326 PGSPAAKALAQLAQSLGGR 344 (366)
T ss_pred CCChHHHHHHHHHHHhcCc
Confidence 9999999999999988764
No 57
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.79 E-value=2.9e-19 Score=171.88 Aligned_cols=163 Identities=22% Similarity=0.222 Sum_probs=107.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC-------CCCccCCCCccccccCCCCCceeee--------
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRLLEMNPEKRTIIPT-------- 240 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~-------s~~~~lg~~~~~~~~~~~~~~i~~~-------- 240 (527)
|.++++|||+||||+++++|..+|++|+||++||+|++.+ ++..+++..+.... ....+...
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 77 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIA---PNLYREEVDATRRVER 77 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHH---HHHHHHHHHHHHHhhh
Confidence 3577899999999999999999999999999999999984 33333432111000 00000000
Q ss_pred c--cCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh-hhhhc--CCCeEEEEeCCC
Q 009721 241 E--YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVV--PLTAAVIVTTPQ 315 (527)
Q Consensus 241 ~--~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~-~~~~~--a~d~viiV~~p~ 315 (527)
. ..+..+++.+. ...++.....+.++++.+.+.+||||||||||+....... ...+. .+|.+++|+.|+
T Consensus 78 ~~~~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~ 151 (217)
T cd02035 78 AWGGEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE 151 (217)
T ss_pred cccchhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC
Confidence 0 01222333221 1222322233666666665345999999999974322211 11122 247899999999
Q ss_pred cchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 316 KLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 316 ~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..++.++.+.++.++..+.+..|+|+|++...
T Consensus 152 ~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 152 KLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 99999999999999999999999999997644
No 58
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.78 E-value=2.3e-18 Score=162.60 Aligned_cols=145 Identities=23% Similarity=0.356 Sum_probs=105.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeecc-CCceEEccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEY-LGVKLVSFG 251 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~-~gl~vl~~~ 251 (527)
|++|+|.|.|||+||||.+..||..|+++|.+|.+||+||+.|...|.-.... +..+ .++.+...
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~-------------~~~~~~~~~V~~~- 66 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQR-------------PGAWPDRIEVYEA- 66 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccc-------------cCCCCCCeeEEec-
Confidence 67999999999999999999999999999999999999999987655311100 0001 12222210
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (527)
.....+.+.++......|||||||+.++-+.....+ +..+|.+++|+.++......+.+.++++.+
T Consensus 67 ------------~e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~a--ia~sDlVlIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 67 ------------DELTILEDAYEAAEASGFDFVLVDLEGGASELNDYA--IARSDLVLIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred ------------cchhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHHH--HHHCCEEEECCCCChHHHHHHHHHHHHHHH
Confidence 011245555555444569999999998776554333 567899999999999999988888887765
Q ss_pred C------CCCEEEEEEecccc
Q 009721 332 L------KVPCIAVVENMCHF 346 (527)
Q Consensus 332 ~------~~~~~gvV~N~~~~ 346 (527)
. ++| ..|+++|+..
T Consensus 133 ~~~~~~~~ip-~~Vl~Tr~~~ 152 (231)
T PF07015_consen 133 LEKAERRDIP-AAVLFTRVPA 152 (231)
T ss_pred HHHhhCCCCC-eeEEEecCCc
Confidence 4 345 4789999753
No 59
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.77 E-value=4.8e-18 Score=143.88 Aligned_cols=99 Identities=33% Similarity=0.525 Sum_probs=85.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
+|+|.|.|||+||||+|.+||..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 589999999999999999999999999999999999987
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHH---HHHc
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 331 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~---~l~~ 331 (527)
||+||||+||+.+.....+ +..+|.+++|+.|+..++..+.++++ ..+.
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999988765533 66789999999999999999999887 3333
Q ss_pred C--CCCEEEEEEe
Q 009721 332 L--KVPCIAVVEN 342 (527)
Q Consensus 332 ~--~~~~~gvV~N 342 (527)
. +....++|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 2 4557888876
No 60
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.77 E-value=1.4e-19 Score=171.13 Aligned_cols=209 Identities=27% Similarity=0.294 Sum_probs=107.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~ 253 (527)
++|+|.|+||||||||+|+|||.+|+++|+||.++|+|.++++++.+++......... ...... +....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-gi~Lp~----p~~~~L~---- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-GIELPV----PSHFFLP---- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHH-T----------EEE-SS----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhc-CcccCC----ccceeec----
Confidence 4899999999999999999999999999999999999999999988876432211110 000000 1111121
Q ss_pred CCcccccCCccH-HHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH-----------
Q 009721 254 GQGRAIMRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID----------- 321 (527)
Q Consensus 254 ~~~~~~~~~~~~-~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~----------- 321 (527)
......+.++.. ...|.+++..+. .++|||||||| |.++..... +...+|.++.|.+.+...+.-
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr~-Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v 148 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSRV-AHSMADTLITPLNDSFVDFDLLGQVDPETFKV 148 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHHH-HHHT-SEEEEEEESSHHHHCCCEEE-TTTS-E
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHHH-HHHhCCEEEccCchhHHhHHHHhccCccccee
Confidence 111222333332 357888888775 68999999999 455544333 244668777665543332210
Q ss_pred -----HHHHHHHHHcC-----CCCEEE-EEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCC
Q 009721 322 -----VAKGVRMFSKL-----KVPCIA-VVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGM 390 (527)
Q Consensus 322 -----~~~~~~~l~~~-----~~~~~g-vV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~ 390 (527)
...++...++. +.++-. |+-||..... .+....-.+.++++.+..|..+..-+.++--+++-.-.|.
T Consensus 149 ~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~--a~Nk~~~~~~l~~ls~rigfr~~~G~~eRvi~RelFp~Gl 226 (261)
T PF09140_consen 149 IGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLD--ARNKRRVEEALEELSKRIGFRVAPGFSERVIYRELFPRGL 226 (261)
T ss_dssp EEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT----HHHHHHHHHHHHHHHHHHT-EEEE--B--HHHCCCGGGT-
T ss_pred cCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHH--hHHHHHHHHHHHHHHHhhCceeCCCcchhhhhHHhccccc
Confidence 01222222222 233333 3446643221 1110111246778888889777666666666677666777
Q ss_pred ceEeeC
Q 009721 391 PEVAAD 396 (527)
Q Consensus 391 pv~~~~ 396 (527)
++.+..
T Consensus 227 TllDl~ 232 (261)
T PF09140_consen 227 TLLDLK 232 (261)
T ss_dssp -GGGSC
T ss_pred hhhccc
Confidence 766544
No 61
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.76 E-value=1.8e-18 Score=144.49 Aligned_cols=88 Identities=31% Similarity=0.621 Sum_probs=81.9
Q ss_pred CCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEE
Q 009721 71 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (527)
Q Consensus 71 ~~~~~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V 150 (527)
.....++++|+++|++|+|||+++|||+|||||+|.+++.++.+.|.|++|+++||..+.+.+++++++..++|++.++|
T Consensus 8 ~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V 87 (111)
T COG2151 8 EAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEV 87 (111)
T ss_pred chhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEE
Confidence 44567899999999999999999999999999999998722689999999999999999999999999999999999999
Q ss_pred EeccCCCc
Q 009721 151 TMSAQPAR 158 (527)
Q Consensus 151 ~l~~~p~~ 158 (527)
+++|+|+.
T Consensus 88 ~l~~~p~W 95 (111)
T COG2151 88 ELTLSPPW 95 (111)
T ss_pred EEEEcCCC
Confidence 99999874
No 62
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.76 E-value=6.5e-18 Score=169.92 Aligned_cols=197 Identities=22% Similarity=0.254 Sum_probs=123.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeee-ccCCceEEccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-EYLGVKLVSFG 251 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~-~~~gl~vl~~~ 251 (527)
||+| |++|||||||||+|+.+|..+|++|+|||++..||.+ ++...||.+-. ...... ..+||+.+..+
T Consensus 1 ~r~~-~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~--------~~~~~v~~~~~L~a~eid 70 (305)
T PF02374_consen 1 MRIL-FFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG--------GEPTKVEGVPNLSAMEID 70 (305)
T ss_dssp -SEE-EEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B--------SS-EEETTCSSEEEEE--
T ss_pred CeEE-EEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC--------CCCeEecCCCCceeeecC
Confidence 3444 4559999999999999999999999999999999977 45445554211 000000 11344433321
Q ss_pred CC---------------------------CCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh------
Q 009721 252 FS---------------------------GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------ 298 (527)
Q Consensus 252 ~~---------------------------~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~------ 298 (527)
.. ......++|-.....+..+.+.+..++||+||+||||.-....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l 150 (305)
T PF02374_consen 71 PEAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERL 150 (305)
T ss_dssp HHHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHH
Confidence 10 000111233333445556655555689999999999953211100
Q ss_pred --------------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009721 299 --------------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (527)
Q Consensus 299 --------------------------------------------------~~~~~a~d~viiV~~p~~~s~~~~~~~~~~ 328 (527)
.........+++|++|+..++.++.+.+..
T Consensus 151 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~ 230 (305)
T PF02374_consen 151 RWWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTE 230 (305)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHH
Confidence 000012357899999999999999999999
Q ss_pred HHcCCCCEEEEEEecccccCCCc-cc----cccCCchHHHHHHHhCCCeEEeccCc
Q 009721 329 FSKLKVPCIAVVENMCHFDADGK-RY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~-~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
++..++++-++|+|++....... .+ ...++..++++.+.|....+..+|+.
T Consensus 231 L~~~gi~v~~vVvNrvlp~~~~~c~~~~~r~~~Q~~~l~~i~~~f~~~~v~~vp~~ 286 (305)
T PF02374_consen 231 LKLYGIPVDAVVVNRVLPEEEDDCPFCAARRKEQQKYLAEIEESFPDLPVVKVPLL 286 (305)
T ss_dssp HHHTT-EEEEEEEEEE-TTCSTTSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE--
T ss_pred HHhcCCccCeEEEEccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999999999986554332 11 12345677888888876677888853
No 63
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.69 E-value=2.6e-16 Score=157.75 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=128.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCC----CccccccCCCCCceeee-----ccCCc
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP----ENRLLEMNPEKRTIIPT-----EYLGV 245 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~----~~~~~~~~~~~~~i~~~-----~~~gl 245 (527)
.|.|++|||||||||+|+.+|..+|+.|+|||+|..||.++. ...|+. +......+.....+.+. .++.+
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL-~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL-GDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch-HhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHH
Confidence 345555999999999999999999999999999999998754 444433 21111100000000000 00000
Q ss_pred -----eEEcc----CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh---------hh-------
Q 009721 246 -----KLVSF----GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT---------LC------- 300 (527)
Q Consensus 246 -----~vl~~----~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~---------~~------- 300 (527)
..++. +...+....++|-.....+..+.+....++||+||+||||.-....+. +.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~~~ 161 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKPRR 161 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhhHH
Confidence 00110 111122334455555566777777776789999999999952211100 00
Q ss_pred ---------------------------------------hhc--CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEE
Q 009721 301 ---------------------------------------QVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAV 339 (527)
Q Consensus 301 ---------------------------------------~~~--a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gv 339 (527)
.+. .-....+|++|+..++.+..++...+...++++.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~v 241 (322)
T COG0003 162 KRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAV 241 (322)
T ss_pred HHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCchhee
Confidence 000 124568899999999999999999999999999999
Q ss_pred EEecccccCCCcc----ccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 340 VENMCHFDADGKR----YYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 340 V~N~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
++|++.+...... ....+++...++.+.|....+..+|.-.
T Consensus 242 i~n~~~p~~~~~~~~~~~~~~q~~~l~~~~~~f~~~~v~~vp~~~ 286 (322)
T COG0003 242 IVNKILPDEADQPFLEARRKIQQKYLKELEETFSDLAVVKVPLLA 286 (322)
T ss_pred eeecccccccccHHHHHHHHHHHHHHHHHHHhhcccceEEecccc
Confidence 9999876654321 1123344677788888877778888543
No 64
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.68 E-value=4.5e-17 Score=148.33 Aligned_cols=141 Identities=26% Similarity=0.381 Sum_probs=98.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--ccc----c---------CCCCCcee
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----M---------NPEKRTII 238 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~----~---------~~~~~~i~ 238 (527)
|+|+|+|.+||+||||+|.|||..||+.|++|++||+|...+.+..+++.+.. +.. . ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999988888877654 111 1 11122333
Q ss_pred eeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009721 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (527)
Q Consensus 239 ~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s 318 (527)
.....+++++++.........+..... .++++.+. ..||+||||+|+........ ..+..+|.+++|+.++..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~li~~l~-~~yd~IivD~~~~~~~~~~~-~~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDV----EELIDALK-EHYDYIIVDLPSSLSNPDTQ-AVLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHH----HHHHHHHH-HHSSEEEEEEESTTTHTHHH-HHHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHH----HHHHHHHH-HcCCEEEEECcCCccHHHHH-HHHHHCCEEEEEECCCccc
Confidence 334478999986665544444444444 44444443 58999999999988765432 1255789999999999887
Q ss_pred HH
Q 009721 319 FI 320 (527)
Q Consensus 319 ~~ 320 (527)
++
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 65
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=99.64 E-value=1.6e-16 Score=164.68 Aligned_cols=80 Identities=23% Similarity=0.270 Sum_probs=74.7
Q ss_pred EEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecC-eeEEEEcCCCCcccCChHHHHh
Q 009721 436 IKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGN-YAVSITWPDGFSQIAPYDQLQT 514 (527)
Q Consensus 436 l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~-~al~i~w~Dgh~s~y~~~~L~~ 514 (527)
+.|.|.| |.+..|+..|||++|+|++|+|+.|+||++++.+||.+|++.+++..++ +.+.|.|+|||.|+|+|+||++
T Consensus 2 l~v~w~d-g~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~~~~~~~i~w~DgH~s~y~~~wL~~ 80 (366)
T TIGR02409 2 VNVKWQD-GKTSRFPAIWLRDNCPCPDCYTISNGARKLLVLDIPVEINIRKLWIDDDGNLVVIFWPDGHLSEFPAEWLKK 80 (366)
T ss_pred eEEEeCC-CCEeeecCeEeecCCCCCCccCcccCCccCchhhcCCcccceEEEEcCCCcEEEEEecCCCceEcCHHHHhh
Confidence 6799999 8899999999999999999999999999999999999999999999875 4589999999999999999997
Q ss_pred ch
Q 009721 515 ME 516 (527)
Q Consensus 515 ~~ 516 (527)
.+
T Consensus 81 ~~ 82 (366)
T TIGR02409 81 RC 82 (366)
T ss_pred cc
Confidence 53
No 66
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.64 E-value=4.3e-16 Score=157.62 Aligned_cols=244 Identities=20% Similarity=0.212 Sum_probs=170.0
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+|++|.++|++|+-..|..|| |...|+.+|+....+.++. .+-...+++.+.+++.|..+.|..+.+
T Consensus 20 ~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev~-------~~l~p~q~~iKiV~eELv~llG~~~~~ 92 (451)
T COG0541 20 GRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEVP-------KGLTPGQQFIKIVYEELVKLLGGENSE 92 (451)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 556899999999999999998888 8899999988655323332 234467799999999999987764444
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
+.+...+|+ +|.++ |-.|+||||++..||.+|.++|+||++|-+|.++|+.-.-
T Consensus 93 ~~l~~~~P~----------------vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQ--------- 146 (451)
T COG0541 93 LNLAKKPPT----------------VILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQ--------- 146 (451)
T ss_pred cccCCCCCe----------------EEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHH---------
Confidence 544433333 77777 8899999999999999999999999999999999863211
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh------hhhhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~------~~~~~~~ 303 (527)
.-.-...-++++++.+. +.......++.++.++...||+|||||.+.+.... ..+....
T Consensus 147 ------L~~La~q~~v~~f~~~~---------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~ 211 (451)
T COG0541 147 ------LKQLAEQVGVPFFGSGT---------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI 211 (451)
T ss_pred ------HHHHHHHcCCceecCCC---------CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc
Confidence 11111223566665321 12233455566666655789999999988654211 1122233
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.-|.+++|+.. +.-+++....+.|++ .+++.|||+++.+.+.++ +..-.+...+|.|+-|.
T Consensus 212 ~P~E~llVvDa--m~GQdA~~~A~aF~e-~l~itGvIlTKlDGdaRG--------GaALS~~~~tg~PIkFi 272 (451)
T COG0541 212 NPDETLLVVDA--MIGQDAVNTAKAFNE-ALGITGVILTKLDGDARG--------GAALSARAITGKPIKFI 272 (451)
T ss_pred CCCeEEEEEec--ccchHHHHHHHHHhh-hcCCceEEEEcccCCCcc--------hHHHhhHHHHCCCeEEE
Confidence 44777887763 444566666677766 567789999997776665 45667888888876543
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=99.60 E-value=3.1e-15 Score=156.03 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=150.5
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...++++|.+.|++++...+..|| |...++..|+-...+.++.- +....+.+.+.+++.|..+.+.....
T Consensus 20 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~v~~el~~~l~~~~~~ 92 (433)
T PRK10867 20 GRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVLK-------SLTPGQQVIKIVNDELVEILGGENSE 92 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhccccc-------cCCcHHHHHHHHHHHHHHHhCCCcce
Confidence 455788899999999998888777 66777777753321112211 11134567777888777665432222
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCCCCCCccCCCCcccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~ 228 (527)
+.+. .+.+.+|.++ |.+|+||||++++||.+|+++ |++|++||+|++++.....+.
T Consensus 93 ~~~~----------------~~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~------ 149 (433)
T PRK10867 93 LNLA----------------AKPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLK------ 149 (433)
T ss_pred eeec----------------CCCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHH------
Confidence 2221 1123467766 899999999999999999998 999999999999875321110
Q ss_pred ccCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh--hhh----hhhhh
Q 009721 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL----TLCQV 302 (527)
Q Consensus 229 ~~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~--~~~----~~~~~ 302 (527)
......|+.+++.+.. ........+.++......||+|||||++.... ..+ .+...
T Consensus 150 ---------~~a~~~gv~v~~~~~~---------~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~ 211 (433)
T PRK10867 150 ---------TLGEQIGVPVFPSGDG---------QDPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA 211 (433)
T ss_pred ---------HHHhhcCCeEEecCCC---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh
Confidence 0011235566653311 11223334444433346899999999996532 111 11112
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 303 ~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
...+.+++|+.+. .-+++....+.|.+ .+++.|+|+|+.+.+.++ +.+-.+...++.|+.+.
T Consensus 212 v~p~evllVlda~--~gq~av~~a~~F~~-~~~i~giIlTKlD~~~rg--------G~alsi~~~~~~PI~fi 273 (433)
T PRK10867 212 VNPDEILLVVDAM--TGQDAVNTAKAFNE-ALGLTGVILTKLDGDARG--------GAALSIRAVTGKPIKFI 273 (433)
T ss_pred hCCCeEEEEEecc--cHHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 2456778887753 23455555555554 456689999997654433 45778888889886653
No 68
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.56 E-value=8.4e-15 Score=152.80 Aligned_cols=244 Identities=20% Similarity=0.255 Sum_probs=146.5
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...++++|.+.|++++...+..|| +...++..|+-...+.++. .+....+.+.+.+.+.|..+.+.....
T Consensus 19 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~v~~eL~~~l~~~~~~ 91 (428)
T TIGR00959 19 GTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVL-------KSLSPGQQFIKIVHEELVAILGGENAS 91 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcccccc-------ccCCcHHHHHHHHHHHHHHHhCCCCcc
Confidence 456899999999999999888887 6677777774322101111 112234567888888887654432111
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCCCCCCCccCCCCcccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLL 228 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~~~s~~~~lg~~~~~~ 228 (527)
+.+. .+.+ .|.+++|.+|+||||++++||.+|+ +.|++|++||+|.+++.....+.
T Consensus 92 ~~~~----------------~~~p-~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~------ 148 (428)
T TIGR00959 92 LNLA----------------KKPP-TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLK------ 148 (428)
T ss_pred cccC----------------CCCC-EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHH------
Confidence 1110 1112 4555559999999999999999987 68999999999998875321110
Q ss_pred ccCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC--hhhhh----hhhh
Q 009721 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQV 302 (527)
Q Consensus 229 ~~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~--~~~~~----~~~~ 302 (527)
......++.++..+. +........+.++.+....||+|||||++... +..+. +...
T Consensus 149 ---------~~a~~~gvp~~~~~~---------~~~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~ 210 (428)
T TIGR00959 149 ---------VLGQQVGVPVFALGK---------GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI 210 (428)
T ss_pred ---------HHHHhcCCceEecCC---------CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh
Confidence 000112333443221 11112233334433333789999999999653 21111 1112
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 303 ~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
...+.+++|+.+. .-.++....+.+.. .+++.|+|+|+.+.+.++ +.+..+...++.|+.+.
T Consensus 211 ~~p~e~lLVvda~--tgq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~--------G~~lsi~~~~~~PI~fi 272 (428)
T TIGR00959 211 LNPDEILLVVDAM--TGQDAVNTAKTFNE-RLGLTGVVLTKLDGDARG--------GAALSVRSVTGKPIKFI 272 (428)
T ss_pred hCCceEEEEEecc--chHHHHHHHHHHHh-hCCCCEEEEeCccCcccc--------cHHHHHHHHHCcCEEEE
Confidence 3357788888764 33455555555542 345689999997644433 46778888899887653
No 69
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.55 E-value=1.5e-14 Score=150.03 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=146.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...++++|.+.|++++...+..|| +...|+..|+-...+.++ . .+....+++.+.+.+.|..+-+-....
T Consensus 20 ~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~~~------~-~~~~~~~~v~~~v~~~L~~~l~~~~~~ 92 (429)
T TIGR01425 20 TVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLEEM------A-SGLNKRKMIQHAVFKELCNLVDPGVEA 92 (429)
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccc------c-cccCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 557899999999999999888888 778888877643211111 1 122244578888888887754322111
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
+.. ..+.+.+|+++ |.+|+||||++++||.+|+++|+||++|++|+++++....+..
T Consensus 93 ~~~----------------~~~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~------ 149 (429)
T TIGR01425 93 FTP----------------KKGKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQ------ 149 (429)
T ss_pred ccc----------------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHH------
Confidence 111 01223578887 8999999999999999999999999999999998643221110
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h-h---hhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-T---LCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~-~---~~~~~ 303 (527)
.....++.+..... .........+.++.+....||+|||||++...... + . +....
T Consensus 150 ---------~a~~~~vp~~~~~~---------~~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~ 211 (429)
T TIGR01425 150 ---------NATKARIPFYGSYT---------ESDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI 211 (429)
T ss_pred ---------HhhccCCeEEeecC---------CCCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc
Confidence 00112333332111 11112223333333333689999999998654211 1 1 11122
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
..+.+++|+.+.. . .++....+.|++ ..++.|+|+|+.+.+.++ +.+-.+...++.|+.+
T Consensus 212 ~p~e~lLVlda~~-G-q~a~~~a~~F~~-~~~~~g~IlTKlD~~arg--------G~aLs~~~~t~~PI~f 271 (429)
T TIGR01425 212 QPDNIIFVMDGSI-G-QAAEAQAKAFKD-SVDVGSVIITKLDGHAKG--------GGALSAVAATKSPIIF 271 (429)
T ss_pred CCcEEEEEecccc-C-hhHHHHHHHHHh-ccCCcEEEEECccCCCCc--------cHHhhhHHHHCCCeEE
Confidence 3467788877542 2 233444455554 245689999997765543 3556677777877654
No 70
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.51 E-value=3.4e-13 Score=133.60 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=102.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
+++|+|+ |++|+||||++++||..+++.|+||++||+|+++..... . ........++.+++.+.
T Consensus 72 ~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~------q---------l~~~~~~~~i~~~~~~~ 135 (272)
T TIGR00064 72 PNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIE------Q---------LEEWAKRLGVDVIKQKE 135 (272)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHH------H---------HHHHHHhCCeEEEeCCC
Confidence 5789999 899999999999999999999999999999987643100 0 00001112344444332
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhh------hhhc------CCCeEEEEeCCCcchHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL------CQVV------PLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~------~~~~------a~d~viiV~~p~~~s~~ 320 (527)
.. .........+......+||+|||||||........+ .... ..+.+++|+... ....
T Consensus 136 ~~---------dp~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~~ 205 (272)
T TIGR00064 136 GA---------DPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQN 205 (272)
T ss_pred CC---------CHHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCHH
Confidence 11 111122122222223789999999999764211100 0111 268888888876 4555
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.+.++..+.+..+ +.|+|+|+++...+. +..-.+...++.|+.+.
T Consensus 206 ~~~~~~~f~~~~~--~~g~IlTKlDe~~~~--------G~~l~~~~~~~~Pi~~~ 250 (272)
T TIGR00064 206 ALEQAKVFNEAVG--LTGIILTKLDGTAKG--------GIILSIAYELKLPIKFI 250 (272)
T ss_pred HHHHHHHHHhhCC--CCEEEEEccCCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 6666555554444 579999997654432 45667777778776553
No 71
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=99.49 E-value=1.6e-14 Score=149.36 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=61.5
Q ss_pred cChhhhhhCCCCCccccCCCCcccccCCCCC---CCcceeEEEEecCeeEEEEcCCCCcccCChHHHHhc
Q 009721 449 LHPATVRRNDRSAQSVDEWTGDQKLQYTDVP---EDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTM 515 (527)
Q Consensus 449 ~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~---~~i~~~~~~~~g~~al~i~w~Dgh~s~y~~~~L~~~ 515 (527)
|++.|||+||+|++|+|+.|+||++++.++| .++.+.++...+++ |+|.|+|||.|.|+++||++-
T Consensus 2 f~~iWLRD~c~c~~c~~~~t~qRl~~~~~i~~~~~~i~~~~~~~~~~~-l~i~W~dgh~s~y~~~wL~~~ 70 (362)
T TIGR02410 2 FHNVWLRDNCTCQECYHLATHQRLLNSFDITSLSEDIKPATVIIDEDT-LRVTWPDGHVSKFKEDWLIRH 70 (362)
T ss_pred CCCeeeecCCCCCccCCCCCCCcccchhhCCCcccCccccEEEEeCCe-EEEEecCCCceecCHHHHHhc
Confidence 7889999999999999999999999888887 99999999988775 999999999999999999865
No 72
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.48 E-value=1.3e-13 Score=108.50 Aligned_cols=72 Identities=43% Similarity=0.730 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEE
Q 009721 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (527)
Q Consensus 77 ~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V 150 (527)
+++|+++|++|.||+++.|+|++|+|++|.+++ ++|.|.|++++++|+..+.+.++++++|.+++|+.+++|
T Consensus 1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~--~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEG--GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECT--CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 578999999999999999999999999999998 899999999999999999999999999999999988865
No 73
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.48 E-value=1.6e-13 Score=143.62 Aligned_cols=241 Identities=16% Similarity=0.171 Sum_probs=147.9
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...++++|.++|++++...+..|| +...++..|+-...+..+ ..+....+.+.+.+.+.|..+-+.....
T Consensus 16 ~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~v~~~L~~~l~~~~~~ 88 (437)
T PRK00771 16 SRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEP-------PKGLTPREHVIKIVYEELVKLLGEETEP 88 (437)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccc-------cccCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 456899999999999999888887 667777776532210111 1234455567777888876654322111
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
.. ....+.+|.|+ |.+|+||||++++||..|++.|++|++||+|.+.++....+..
T Consensus 89 ~~-----------------~~~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~------ 144 (437)
T PRK00771 89 LV-----------------LPLKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ------ 144 (437)
T ss_pred cc-----------------cCCCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH------
Confidence 10 01123577777 8999999999999999999999999999999987642111100
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh--h----hhhhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--Q----LTLCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--~----~~~~~~~ 303 (527)
. ....++.+.... ........+.+.++.. ..+|+|||||+|..... . ..+....
T Consensus 145 -------l--a~~~gvp~~~~~---------~~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~ 204 (437)
T PRK00771 145 -------L--AEKIGVPFYGDP---------DNKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAV 204 (437)
T ss_pred -------H--HHHcCCcEEecC---------CccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHh
Confidence 0 001122222211 0112233455555544 45799999999865421 1 1222344
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
..|.+++|+.+... .++....+.|.. .+++.|+|+|+.+.+.++ +.+-.+...++.|+.+.
T Consensus 205 ~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~--------G~~ls~~~~~~~Pi~fi 265 (437)
T PRK00771 205 KPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKG--------GGALSAVAETGAPIKFI 265 (437)
T ss_pred cccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCcc--------cHHHHHHHHHCcCEEEE
Confidence 56888888887553 333344444443 255689999997654433 46677888888877653
No 74
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.47 E-value=1.3e-12 Score=117.63 Aligned_cols=143 Identities=21% Similarity=0.264 Sum_probs=85.1
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC-CccCCCCccccccCCCCCceeeeccCCceE--EccCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKL--VSFGF 252 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~-~~~lg~~~~~~~~~~~~~~i~~~~~~gl~v--l~~~~ 252 (527)
|.+. ||||+||||++.+++..+.++|+||+++|+|++.+.. ..+++....+ .+.. ..+++.+ ++.+.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRM------ERHA---SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEh------hhee---cCCCceEEEcCCcC
Confidence 4455 9999999999999999999999999999999865432 2222211110 0111 1134433 33221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (527)
..... .......+ +.+...+|||||||| +|.+.....+ +..+|.+++|++|+...-..+.+. .+++..
T Consensus 72 ~~~~~----~~~~~~~~----~~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~ 139 (148)
T cd03114 72 FLGGL----SRATPEVI----RVLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDDIQAIKA-GIMEIA 139 (148)
T ss_pred ccccc----chhHHHHH----HHHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhHHHHhhh-hHhhhc
Confidence 11110 01112223 222225899999999 7676554443 567899999999995555444444 344443
Q ss_pred CCCEEEEEEecc
Q 009721 333 KVPCIAVVENMC 344 (527)
Q Consensus 333 ~~~~~gvV~N~~ 344 (527)
+ -+++|++
T Consensus 140 ~----~~~~~k~ 147 (148)
T cd03114 140 D----IVVVNKA 147 (148)
T ss_pred C----EEEEeCC
Confidence 3 4677874
No 75
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.46 E-value=1.8e-13 Score=107.71 Aligned_cols=77 Identities=56% Similarity=0.971 Sum_probs=59.7
Q ss_pred CEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCC
Q 009721 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGR 358 (527)
Q Consensus 282 D~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~ 358 (527)
||+|||+|||+++..+++.+....+.+++|++|+..+..+++|.++++++.+++++|+|.||..+.+. ++.++.|++
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~ 80 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGK 80 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCC
Confidence 89999999999999999988889999999999999999999999999999999999999999998873 455555554
No 76
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.46 E-value=2.1e-13 Score=127.76 Aligned_cols=206 Identities=18% Similarity=0.170 Sum_probs=124.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCcc---CCCCccccccCCC--CCceeeeccCCceE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM---VSPENRLLEMNPE--KRTIIPTEYLGVKL 247 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~---lg~~~~~~~~~~~--~~~i~~~~~~gl~v 247 (527)
...-.|.+|||||||||.+..||..||+-+.+||+|..||.++.++.+ |+..+........ .-.|.|. .++.-
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~e~~~ 95 (323)
T KOG2825|consen 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--VEMGD 95 (323)
T ss_pred eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHhcCCCccccChhhheeeecCCc--hhhhh
Confidence 345667789999999999999999999999999999999998766554 3322221111100 0011111 00111
Q ss_pred Ec--------------cCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-h--------------
Q 009721 248 VS--------------FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-T-------------- 298 (527)
Q Consensus 248 l~--------------~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~-------------- 298 (527)
++ .|...+-...++|-+..-.+.+++..++.-+||.||+||.|.-....+ .
T Consensus 96 ~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl~~ 175 (323)
T KOG2825|consen 96 MPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKLLS 175 (323)
T ss_pred hHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHHHHH
Confidence 11 000000011122222333445555555557899999999994221110 0
Q ss_pred --------hh---h-------------------------------hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCE
Q 009721 299 --------LC---Q-------------------------------VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPC 336 (527)
Q Consensus 299 --------~~---~-------------------------------~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~ 336 (527)
+. . ...+...++|+.|+..|+.++.|+++.+.+.+++.
T Consensus 176 l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~idt 255 (323)
T KOG2825|consen 176 LKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGIDT 255 (323)
T ss_pred HHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 00 0 01256678999999999999999999999999999
Q ss_pred EEEEEecccccCCCc-c-----ccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 337 IAVVENMCHFDADGK-R-----YYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 337 ~gvV~N~~~~~~~~~-~-----~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
-.+|+|+.-+..... . -...+..++.++.+.|..-.+..+|..+
T Consensus 256 hnIIVNQLL~~~~~~~ck~C~ar~k~Q~kyLdqi~elyedfhv~klPl~~ 305 (323)
T KOG2825|consen 256 HNIIVNQLLFPDNEVSCKKCAARRKMQSKYLDQIEELYEDFHVVKLPLLP 305 (323)
T ss_pred cceeeeeccCCCCccchHHHHHHHHHHHHHhhhHHHHHhhcceeecccch
Confidence 999999876654310 0 0123334566677766655566677654
No 77
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.45 E-value=4.5e-13 Score=122.35 Aligned_cols=87 Identities=25% Similarity=0.479 Sum_probs=80.3
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEec---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeE
Q 009721 72 STGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINE---ALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (527)
Q Consensus 72 ~~~~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~---~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v 148 (527)
..+.++++|+++|++|+||+++.|||++|+|+++.+++ .+++|.|.|++|+|+|++.+.+.++++++|.+++|++++
T Consensus 70 ~~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V 149 (174)
T TIGR03406 70 DGEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEV 149 (174)
T ss_pred cccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeE
Confidence 34567899999999999999999999999999999987 223899999999999999999999999999999999999
Q ss_pred EEEeccCCCc
Q 009721 149 NVTMSAQPAR 158 (527)
Q Consensus 149 ~V~l~~~p~~ 158 (527)
+|++.++|+.
T Consensus 150 ~V~l~~dp~W 159 (174)
T TIGR03406 150 EVELVFDPPW 159 (174)
T ss_pred EEEEEecCCC
Confidence 9999999985
No 78
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.38 E-value=1.2e-11 Score=114.53 Aligned_cols=164 Identities=21% Similarity=0.231 Sum_probs=99.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
++.+. |+.|+||||++.++|..+++.|++|+++|+|++++.....+.. .....++.+++....
T Consensus 2 ~~~~~-G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~---------------~~~~~~~~~~~~~~~- 64 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRV---------------LGEQVGVPVFEEGEG- 64 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHH---------------hcccCCeEEEecCCC-
Confidence 34444 9999999999999999999999999999999987654322110 001224555553221
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh--hhh-h---hhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL-T---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~--~~~-~---~~~~~a~d~viiV~~p~~~s~~~~~~~~~~ 328 (527)
......+.+.+....+.+||+||||+|+.... ..+ . +......+.+++|+.+. ..........++
T Consensus 65 --------~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~ 135 (173)
T cd03115 65 --------KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAF 135 (173)
T ss_pred --------CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHH
Confidence 11223333333333347899999999997531 111 1 11112368888888874 333344444444
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 329 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
.+..+ +.++|+|+++...+. +..-.+.+..+.|+.+
T Consensus 136 ~~~~~--~~~viltk~D~~~~~--------g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 136 NEALG--ITGVILTKLDGDARG--------GAALSIRAVTGKPIKF 171 (173)
T ss_pred HhhCC--CCEEEEECCcCCCCc--------chhhhhHHHHCcCeEe
Confidence 44555 579999997644322 2233488888877654
No 79
>KOG3888 consensus Gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.37 E-value=2.5e-13 Score=132.69 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=74.7
Q ss_pred CccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEe-cCeeEEEEcCCCCcccCChH
Q 009721 432 SIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPM-GNYAVSITWPDGFSQIAPYD 510 (527)
Q Consensus 432 ~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~-g~~al~i~w~Dgh~s~y~~~ 510 (527)
..+-+++.|.| +++..|+..|||+||||+.|+++.++.|++.+...+.++.+.++... ....|.|.|+|||.|.|+.+
T Consensus 24 ~~~iv~v~~~d-~~~~~fp~iwlrDncpc~~Cf~~s~kark~~~~~~d~~i~~~~l~~ded~k~l~I~W~Dgh~s~Fpl~ 102 (407)
T KOG3888|consen 24 RSHIVQVPWFD-RKSLTFPFIWLRDNCPCSDCFSPSAKARKLLWDHFDVNIRPQDLQIDEDRKSLVIKWSDGHHSQFPLQ 102 (407)
T ss_pred CcceEeecccC-CCcccccceeeecCCcchhhcCHHHHHHHhhhhhcccccccceeeEcccCcEEEEEecCCCcccCCHH
Confidence 35667888999 89999999999999999999999999999999889999999999886 33579999999999999999
Q ss_pred HHHhc
Q 009721 511 QLQTM 515 (527)
Q Consensus 511 ~L~~~ 515 (527)
||++=
T Consensus 103 wlker 107 (407)
T KOG3888|consen 103 WLKER 107 (407)
T ss_pred HHHhh
Confidence 99864
No 80
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.35 E-value=3.4e-11 Score=121.80 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=100.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
+++|+|+ |..|+||||++++||..++..|++|+++|+|+++..... +........++.+++...
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~e---------------ql~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIE---------------QLQVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHH---------------HHHHHHHHcCceEEEeCC
Confidence 4689988 699999999999999999999999999999998753100 000111223455554322
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh------hhhh------hcCCCeEEEEeCCCcchHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------TLCQ------VVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~------~~~~------~~a~d~viiV~~p~~~s~~ 320 (527)
.... ....+..+... ...+||+|||||||....... .+.. -...+..++|+... ....
T Consensus 178 ~~dp--------a~~v~~~l~~~-~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g~~ 247 (318)
T PRK10416 178 GADP--------ASVAFDAIQAA-KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TGQN 247 (318)
T ss_pred CCCH--------HHHHHHHHHHH-HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CChH
Confidence 1111 01112222211 237899999999996541110 0100 01346677777766 3444
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.+.++..+.+.. .+.|+|+|+.+..... +.+-.+...++.|+.+.
T Consensus 248 ~~~~a~~f~~~~--~~~giIlTKlD~t~~~--------G~~l~~~~~~~~Pi~~v 292 (318)
T PRK10416 248 ALSQAKAFHEAV--GLTGIILTKLDGTAKG--------GVVFAIADELGIPIKFI 292 (318)
T ss_pred HHHHHHHHHhhC--CCCEEEEECCCCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 555544444333 4579999997644332 45666777778876654
No 81
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.35 E-value=3.5e-12 Score=109.82 Aligned_cols=111 Identities=31% Similarity=0.341 Sum_probs=69.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC---C
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG---F 252 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~---~ 252 (527)
|++. +|||+||||++.++|..|+++|++|++||+|+ +++...++.... ++..++-.+ +
T Consensus 2 i~~~-GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~----------------~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAIT-GKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG----------------EIKLLLVMGMGRP 62 (116)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC----------------CceEEEEeccccc
Confidence 4444 89999999999999999999999999999999 232222221110 111101111 1
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEE
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV 311 (527)
......+..+ ..+++++..+....|||+|+||++|+......+ ...+|.+++|
T Consensus 63 ~~~g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCCCCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 1112222111 256666666545899999999999988665543 3356777665
No 82
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.30 E-value=4.2e-11 Score=115.25 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~ 219 (527)
|++++.|.++||||||||+|++||.+|+++|++|++||+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 678999999999999999999999999999999999999999876543
No 83
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.30 E-value=2.6e-11 Score=100.28 Aligned_cols=93 Identities=41% Similarity=0.593 Sum_probs=73.5
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCCCcc
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~~~~ 257 (527)
+.++++|+||||++.+||..|++.|++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~------------------------------------------------ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID------------------------------------------------ 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC------------------------------------------------
Confidence 34477799999999999999999999999999
Q ss_pred cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHH---HcCC
Q 009721 258 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF---SKLK 333 (527)
Q Consensus 258 ~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l---~~~~ 333 (527)
|+||+|++++.+.... .......+|.+++|+.++..++....+..+.. ...+
T Consensus 35 ------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (99)
T cd01983 35 ------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEG 90 (99)
T ss_pred ------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccC
Confidence 8999999999876641 01224567999999999999999888875422 2334
Q ss_pred CCEEEEEEe
Q 009721 334 VPCIAVVEN 342 (527)
Q Consensus 334 ~~~~gvV~N 342 (527)
....++++|
T Consensus 91 ~~~~~vv~N 99 (99)
T cd01983 91 LRPVGVVVN 99 (99)
T ss_pred CceEEEEeC
Confidence 556777766
No 84
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.22 E-value=2.3e-10 Score=116.48 Aligned_cols=163 Identities=16% Similarity=0.170 Sum_probs=100.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
.++|+|+ |.+|+||||+++.||..|..+|++|+++|+|+++.....- + .......|+.++...
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQ------L---------k~yae~lgipv~v~~- 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------L---------QDYVKTIGFEVIAVR- 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH------H---------HHHhhhcCCcEEecC-
Confidence 4688888 6699999999999999999999999999999987321100 0 000111244444311
Q ss_pred CCCcccccCCccHHHHHHHHHHhcc-cCCCCEEEEeCCCCCChhhh------hhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL------TLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~IIID~pp~~~~~~~------~~~~~~a~d~viiV~~p~~~s~~~~~~~ 325 (527)
.. ..+.+.+..+. ..+||+|||||++....... .+.....-+.+++|+.+. ....++...
T Consensus 304 --------d~----~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d~~~i 370 (436)
T PRK11889 304 --------DE----AAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKDMIEI 370 (436)
T ss_pred --------CH----HHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHHHHHH
Confidence 11 12223333332 13699999999985432111 111112235667776553 344566677
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
++.|+. .++-++|+++.+..... +.+-.+...++.|+.+.
T Consensus 371 ~~~F~~--~~idglI~TKLDET~k~--------G~iLni~~~~~lPIsyi 410 (436)
T PRK11889 371 ITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 410 (436)
T ss_pred HHHhcC--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 777776 45579999996644322 56677888888877653
No 85
>KOG3889 consensus Predicted gamma-butyrobetaine,2-oxoglutarate dioxygenase [Lipid transport and metabolism]
Probab=99.20 E-value=8.8e-12 Score=117.58 Aligned_cols=71 Identities=17% Similarity=0.221 Sum_probs=65.1
Q ss_pred CceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCCCCcccCChHHHHhc
Q 009721 444 DEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQIAPYDQLQTM 515 (527)
Q Consensus 444 g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dgh~s~y~~~~L~~~ 515 (527)
-..+.++..|||+||+|++|+|-.|.||..|+.+++.+|.|..+..++- .|+|.|+|||.|-|..+|+-.=
T Consensus 15 ~~~~~~~~vWLRDHCrs~~cyn~~TnQR~~D~~sl~~~i~p~~v~~De~-tLq~~W~DgH~skydl~~i~~~ 85 (371)
T KOG3889|consen 15 PSKLIMPFVWLRDHCRSQKCYNLPTNQRKCDITSLSKIIHPNQVIIDEA-TLQIVWIDGHQSKYDLGNIIRE 85 (371)
T ss_pred CceEEeeeeehhhhcchhhhcCCccccccccccccchhcCcceEEEcCc-EEEEEeccccccccchhHHhhh
Confidence 3467789999999999999999999999999999999999999999864 5999999999999999998643
No 86
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.20 E-value=2.3e-10 Score=105.31 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=89.3
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---cc---ccCCCCCceeeeccCCceEEccC
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL---EMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~---~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
|++..+|+||||++.+||..|+++|+||.+++....+.. ..+.. +. ........+. . .....+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~~~~~-----~-~~~~~~ 70 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDWDEVN-----P-YAFALP 70 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCchhccC-----C-eeeCCC
Confidence 567889999999999999999999999999854443211 00000 00 0000000000 0 001000
Q ss_pred CCCCcccccCC-ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 252 FSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 252 ~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~------~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
..........+ +.....+.+.++.+. .+||+||||+|++.... ...+.... .+.+++|+.+...++..+..
T Consensus 71 ~~p~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~~~~ 148 (166)
T TIGR00347 71 LSPHIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINHTLL 148 (166)
T ss_pred CChHHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHH
Confidence 00000001101 111122444444443 78999999999875421 11111111 35689999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEe
Q 009721 325 GVRMFSKLKVPCIAVVEN 342 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N 342 (527)
..+.+++.+.++.|+|+|
T Consensus 149 ~~~~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 149 TVEHARQTGLTLAGVILN 166 (166)
T ss_pred HHHHHHHCCCCeEEEEeC
Confidence 999999999999999998
No 87
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.18 E-value=2.3e-10 Score=110.43 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=108.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc-ccCCCCCceeeeccCCceEEccCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~-~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
|.|++.-.|+|||+++++|+..|+++|++|.++-.=..+..- .....+..+. ........ .... ....+......
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~g~~~-~~~~~d~~~~~~~~~~~~~--~~~~-~~~~~~~~~sp 77 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQSGCEE-TDRNGDALALQRLSGLPLD--YEDV-NPYRFEEPLSP 77 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEecCCCC-CCCcHHHHHHHHHcCCCCC--hhhc-CceeeCCCCCH
Confidence 667888999999999999999999999999886421111100 0000000000 00000000 0000 00111111000
Q ss_pred CcccccCC-ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh---hhhhhc--CCCeEEEEeCCCcchHHHHHHHHHH
Q 009721 255 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL---TLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRM 328 (527)
Q Consensus 255 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~---~~~~~~--a~d~viiV~~p~~~s~~~~~~~~~~ 328 (527)
.-.....+ ......+.+.++.+. ++||+||||+++|+..... ..+.+. --..+++|+.++..++..+...++.
T Consensus 78 ~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~ 156 (222)
T PRK00090 78 HLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEA 156 (222)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH
Confidence 00000011 111223344444443 7899999999988642211 001010 1134788888888888888888888
Q ss_pred HHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccC
Q 009721 329 FSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (527)
Q Consensus 329 l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (527)
++..+.++.|+|+|++.... . ...++..+.+.+.++.++++.+|+
T Consensus 157 l~~~~~~i~gvIlN~~~~~~-~----~~~~~~~~~l~~~~gi~vlg~ip~ 201 (222)
T PRK00090 157 IRARGLPLAGWVANGIPPEP-G----LRHAENLATLERLLPAPLLGELPY 201 (222)
T ss_pred HHHCCCCeEEEEEccCCCcc-h----hHHHHHHHHHHHHcCCCeEEecCC
Confidence 88888999999999965331 1 122356788889999999999997
No 88
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.17 E-value=2e-10 Score=96.19 Aligned_cols=81 Identities=27% Similarity=0.590 Sum_probs=75.0
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEEeccCC
Q 009721 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP 156 (527)
Q Consensus 77 ~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~l~~~p 156 (527)
+++|.++|++|.||+++.+++++|+|+++.++++ +.+.|.++++.|+|+..+.+.+.+++++..++|+.+++|++...+
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 5789999999999999999999999999999852 589999999999999999999999999999999999999988776
Q ss_pred Cc
Q 009721 157 AR 158 (527)
Q Consensus 157 ~~ 158 (527)
+.
T Consensus 82 ~~ 83 (99)
T TIGR02945 82 PW 83 (99)
T ss_pred CC
Confidence 64
No 89
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=2.5e-10 Score=112.23 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
|+++|.|+ |+||+||||++.+++.+++.+|++|++||+|++...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 56666666 7799999999999999999999999999999976543
No 90
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.10 E-value=9e-10 Score=110.24 Aligned_cols=74 Identities=15% Similarity=0.307 Sum_probs=57.0
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccc----cccCCchHHHHHHHhCCCeEEeccCc
Q 009721 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
..+++|++|+..++.++.++++.++..+.+..++|+|++........+ ...+++.++++.+.|+...+..+|+.
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~~~~~~~~~~r~~~q~~~L~~i~~~~~~~~~~~vp~~ 267 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPENAQDEFCQARWELQQKYLKEIPEKFADLPVAEVPLQ 267 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC
Confidence 457999999999999999999999999999999999998654221111 12345667888888876677777754
No 91
>PRK14974 cell division protein FtsY; Provisional
Probab=99.09 E-value=1.5e-09 Score=110.18 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=132.2
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEE
Q 009721 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (527)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~ 151 (527)
.+++++.+.|.++..-.+..|| +...++..++-.-.+.+ . .......+.+.+.+++.+..+-+... .++
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~ 129 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKK------V-KRGEDVEEIVKNALKEALLEVLSVGD-LFD 129 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcc------C-CCccCHHHHHHHHHHHHHHHHhCCCc-chh
Confidence 5788888888888777776666 44455555432211000 1 11112334455666666655422111 000
Q ss_pred eccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccC
Q 009721 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (527)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~ 231 (527)
+. ..+ ...+.+++|+|+ |..|+||||++++||..|.+.|++|+++++|.++......+
T Consensus 130 ~~---------~~~--~~~~~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL---------- 187 (336)
T PRK14974 130 LI---------EEI--KSKGKPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL---------- 187 (336)
T ss_pred hh---------hhh--hccCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH----------
Confidence 00 000 011224677777 89999999999999999999999999999998764321100
Q ss_pred CCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh-hhh-h----hhhhcCC
Q 009721 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQL-T----LCQVVPL 305 (527)
Q Consensus 232 ~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~-~~~-~----~~~~~a~ 305 (527)
.......|+.+++.... ......+.+.++.....+||+|||||++.... ..+ . +.....-
T Consensus 188 -----~~~a~~lgv~v~~~~~g---------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p 253 (336)
T PRK14974 188 -----EEHAERLGVKVIKHKYG---------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP 253 (336)
T ss_pred -----HHHHHHcCCceecccCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC
Confidence 00011123444432211 11122233333333336899999999986532 111 1 1111234
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+.+++|+.... . .++....+.|.+ .+.+.|+|+|+.+..... +.+-.+...++.|+.+.
T Consensus 254 d~~iLVl~a~~-g-~d~~~~a~~f~~-~~~~~giIlTKlD~~~~~--------G~~ls~~~~~~~Pi~~i 312 (336)
T PRK14974 254 DLVIFVGDALA-G-NDAVEQAREFNE-AVGIDGVILTKVDADAKG--------GAALSIAYVIGKPILFL 312 (336)
T ss_pred ceEEEeecccc-c-hhHHHHHHHHHh-cCCCCEEEEeeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 77777776633 2 333333444443 234579999997655433 34555666677776653
No 92
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.09 E-value=1.7e-09 Score=109.90 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=95.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
.++|+|++. .|+||||++++||..+.++|++|++|++|+|+......+ .. .....++.+....
T Consensus 206 ~~ii~lvGp-tGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQL------k~---------yae~lgvpv~~~~- 268 (407)
T PRK12726 206 HRIISLIGQ-TGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQF------QG---------YADKLDVELIVAT- 268 (407)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHH------HH---------HhhcCCCCEEecC-
Confidence 578888855 599999999999999999999999999999975421100 00 0011122222110
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh--hhhh----hhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~--~~~~----~~~~~a~d~viiV~~p~~~s~~~~~~~~ 326 (527)
........+..+.. .++||+|||||++.... ..+. +......+.+++|..+. ....++...+
T Consensus 269 --------dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~i~ 336 (407)
T PRK12726 269 --------SPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMTIL 336 (407)
T ss_pred --------CHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHHHH
Confidence 11112223333321 15799999999986431 1111 11112234555666553 3344455555
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+.++. +++.++|+++.+..+.. +.+-.+...+|.|+.+.
T Consensus 337 ~~f~~--l~i~glI~TKLDET~~~--------G~~Lsv~~~tglPIsyl 375 (407)
T PRK12726 337 PKLAE--IPIDGFIITKMDETTRI--------GDLYTVMQETNLPVLYM 375 (407)
T ss_pred HhcCc--CCCCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 55544 44579999997654432 56677888888876653
No 93
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.08 E-value=3.9e-10 Score=100.24 Aligned_cols=69 Identities=25% Similarity=0.494 Sum_probs=65.1
Q ss_pred CCCCCCC-CCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEEeccCCCc
Q 009721 87 IIDPDFG-TDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPAR 158 (527)
Q Consensus 87 V~dPel~-~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~l~~~p~~ 158 (527)
|.|||++ .||+++|+|++|++++ +.|.|+|++|+++||..+.|.++++++|.++ |+.+++|++.+.|+.
T Consensus 1 v~DPEi~~~sIvdLG~Vr~V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~W 70 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPW 70 (146)
T ss_pred CcCCCCCCCCchhcCCeeEEEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCC
Confidence 7899999 8999999999999987 6899999999999999999999999999987 999999999999874
No 94
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.07 E-value=2e-09 Score=110.99 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=92.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHH-HHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~L-A~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
++|+|+ |.+|+||||++++||..+ ..+|++|+++|+|.|+....+.+. ......++.+.+.
T Consensus 224 ~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk---------------~yAe~lgvp~~~~-- 285 (432)
T PRK12724 224 KVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLK---------------RYADTMGMPFYPV-- 285 (432)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHH---------------HHHHhcCCCeeeh--
Confidence 456665 999999999999999876 578999999999999864322110 0001123322220
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh--hhhh-hhhhc------CCCeEEEEeCCCcchHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT-LCQVV------PLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~--~~~~-~~~~~------a~d~viiV~~p~~~s~~~~~ 323 (527)
.. +..+...+...+||+|||||++.... ..+. +..+. .-...++|+.+.. ...++.
T Consensus 286 ----------~~----~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~~ 350 (432)
T PRK12724 286 ----------KD----IKKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTL 350 (432)
T ss_pred ----------HH----HHHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHHH
Confidence 00 11222222236899999999664321 1111 11111 1124556655443 344566
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.+.+.++.++ +-++|+++.+-.... +.+-.+...++.|+.+.
T Consensus 351 ~~~~~f~~~~--~~glIlTKLDEt~~~--------G~il~i~~~~~lPI~yl 392 (432)
T PRK12724 351 TVLKAYESLN--YRRILLTKLDEADFL--------GSFLELADTYSKSFTYL 392 (432)
T ss_pred HHHHHhcCCC--CCEEEEEcccCCCCc--------cHHHHHHHHHCCCEEEE
Confidence 6677776555 469999996644332 45667777888876543
No 95
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.02 E-value=3.6e-09 Score=99.80 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=98.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
+++|+++ |-.||||||+++.||+.+..+|++|.+|-+|.++..... +.-.-...-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~e---------------QL~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVE---------------QLKTYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHH---------------HHHHHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHH---------------HHHHHHHHhccccchhhc
Confidence 3688888 778999999999999999988999999999998743110 000011122454443221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh-h-----hhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-Q-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~-~-----~~~~~~~a~d~viiV~~p~~~s~~~~~~~~ 326 (527)
. ......+.+.++....++||+|||||++..... . ..+.....-+.+++|+..... ..++..+.
T Consensus 65 ~---------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~ 134 (196)
T PF00448_consen 65 E---------SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQAL 134 (196)
T ss_dssp T---------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHH
T ss_pred c---------hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHH
Confidence 1 122334444444443478999999998743211 1 112223345667777666553 45555666
Q ss_pred HHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 327 RMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
...+..++ -++|+++.+...+. +.+-.+....+.|+.+
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~~~--------G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETARL--------GALLSLAYESGLPISY 172 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSSTT--------HHHHHHHHHHTSEEEE
T ss_pred HHhhcccC--ceEEEEeecCCCCc--------ccceeHHHHhCCCeEE
Confidence 66666665 48999996543322 4566677777776543
No 96
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.01 E-value=1.7e-09 Score=113.71 Aligned_cols=160 Identities=18% Similarity=0.221 Sum_probs=91.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH--HCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
.++|+|+ |.+||||||++++||..++ +.|++|++||+|+|+..... .+.. .....++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~e------qL~~---------~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVE------QLKT---------YAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHH------HHHH---------HHHHhCCceEcc
Confidence 4588888 7799999999999999998 45899999999998743110 0000 001112222211
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h-hhhhhcC-C---CeEEEEeCCCcchHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVVP-L---TAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~-~~~~~~a-~---d~viiV~~p~~~s~~~~~ 323 (527)
. .... +...+..+ ..||+|||||++...... . .+..+.. + ..+++|+.. .....++.
T Consensus 285 ~---------~~~~----l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a-~~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPKE----LAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA-TTKYEDLK 348 (424)
T ss_pred C---------CHHh----HHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC-CCCHHHHH
Confidence 0 1111 22233332 579999999987533211 0 1111211 1 233444433 34556677
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
.+++.++.+++ .++|+++++..... +.+-.+....+.|+.+
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~~~--------G~i~~~~~~~~lPv~y 389 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETSSL--------GSILSLLIESGLPISY 389 (424)
T ss_pred HHHHHhCCCCC--CEEEEecccccccc--------cHHHHHHHHHCCCEEE
Confidence 77777776664 58999996543211 3566677777877654
No 97
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.00 E-value=1.2e-08 Score=90.30 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCCCcc
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~~~~ 257 (527)
|..++| +|||+++..|+..|.++|.+|..+....+
T Consensus 4 ~~~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-------------------------------------------- 38 (134)
T cd03109 4 FGTGTD-IGKTVATAILARALKEKGYRVAPLKPVQT-------------------------------------------- 38 (134)
T ss_pred EeCCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC--------------------------------------------
Confidence 445777 99999999999999999999999987764
Q ss_pred cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009721 258 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (527)
Q Consensus 258 ~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (527)
+|++||+.++|+... ......... .-+++|++|+..++.++...++.++.
T Consensus 39 -----------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~ 94 (134)
T cd03109 39 -----------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARI 94 (134)
T ss_pred -----------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHh
Confidence 477777777665411 111111222 24788999999999989999999999
Q ss_pred CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecc
Q 009721 332 LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (527)
Q Consensus 332 ~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (527)
.++.+.+++.|++..... .+ ....+.+.+.++.+.++.||
T Consensus 95 ~g~~i~gvi~N~~~~~~~-----~~-~~~~~~i~~~~gip~LG~IP 134 (134)
T cd03109 95 KGIILNGVLGNVIVEKEG-----LA-TLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred cCCceeEEEEccCCCccc-----hh-hhhHHHHHHhcCCCEEEeCC
Confidence 999999999999654321 11 13578889999999999887
No 98
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.00 E-value=7.8e-09 Score=110.15 Aligned_cols=203 Identities=19% Similarity=0.203 Sum_probs=113.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
+|+.|.|++.++|+||||++++|+.+|+++|++|..+..++.... ..... .+......+++...
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d--------~~~~~------~~~g~~~~~ld~~~-- 65 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYID--------PAYHT------AATGRPSRNLDSWM-- 65 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCccc--------HHHHH------HHhCCCcccCCcee--
Confidence 356799999999999999999999999999999999988543211 00000 00000011222111
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchH--H
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAF--I 320 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~---------~~~~~~~~~a~d~viiV~~p~~~s~--~ 320 (527)
.. ...+.+.+..+. ..||++||....|+-+ ....++.... .-+++|+.+...+. .
T Consensus 66 --------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a 131 (451)
T PRK01077 66 --------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAA 131 (451)
T ss_pred --------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHH
Confidence 01 123444444433 6899999988755422 1122222222 34666777665332 2
Q ss_pred HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHH-hcccCCCceEeeCCCC
Q 009721 321 DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS-ASGDSGMPEVAADPCG 399 (527)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~-~a~~~g~pv~~~~p~s 399 (527)
.+...+..+. .++++.|+|+|++.... + .+...+..+..+.++++.||+++.+. .+...|.-. .....
T Consensus 132 ~l~~~~~~~~-~~i~i~GvI~N~v~~~~----~----~~~l~~~l~~~gipvLG~IP~~~~l~~p~r~lgl~~--~~e~~ 200 (451)
T PRK01077 132 ALVLGFATFD-PDVRIAGVILNRVGSER----H----YQLLREALERCGIPVLGALPRDAALALPERHLGLVQ--ASEHG 200 (451)
T ss_pred HHHHHHHHhC-CCCCEEEEEEECCCChh----H----HHHHHHHHHhcCCCEEEEeeCCcccCCCccccCCCC--ccccc
Confidence 2333333332 26789999999974211 1 12334445558999999999998764 222233211 11122
Q ss_pred HHHHHHHHHHHHHHHH
Q 009721 400 EVANTFQDLGVCVVQQ 415 (527)
Q Consensus 400 ~~a~~~~~la~~i~~~ 415 (527)
...+.+..+++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~ 216 (451)
T PRK01077 201 DLEARLDALADLVEEH 216 (451)
T ss_pred cHHHHHHHHHHHHHHc
Confidence 3455556666655544
No 99
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.96 E-value=7.3e-09 Score=109.44 Aligned_cols=159 Identities=19% Similarity=0.173 Sum_probs=90.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHC--CCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~--G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
.+++|+|+ |.+|+||||++.+||..++++ |++|.+|++|.++......+. .. ....++.+..
T Consensus 349 ~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk------~y---------a~iLgv~v~~ 412 (559)
T PRK12727 349 RGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH------SY---------GRQLGIAVHE 412 (559)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH------Hh---------hcccCceeEe
Confidence 35789988 789999999999999998875 589999999998743211100 00 0001222211
Q ss_pred cCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-----h-hhh-hcCCCeEEEEeCCCcchHHHH
Q 009721 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-----T-LCQ-VVPLTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-----~-~~~-~~a~d~viiV~~p~~~s~~~~ 322 (527)
. ... ..+..+++.+ .+||+|||||++....... . +.. ....+.+++..++ +..+.
T Consensus 413 a---------~d~----~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts---s~~Dl 474 (559)
T PRK12727 413 A---------DSA----ESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA---HFSDL 474 (559)
T ss_pred c---------CcH----HHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC---ChhHH
Confidence 0 011 1233344333 5799999999985432111 0 111 1112233333333 45555
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 323 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
...++.+... ...|+|+|+++...+. +.+-.+...++.|+.+
T Consensus 475 ~eii~~f~~~--~~~gvILTKlDEt~~l--------G~aLsv~~~~~LPI~y 516 (559)
T PRK12727 475 DEVVRRFAHA--KPQGVVLTKLDETGRF--------GSALSVVVDHQMPITW 516 (559)
T ss_pred HHHHHHHHhh--CCeEEEEecCcCccch--------hHHHHHHHHhCCCEEE
Confidence 6666666654 4579999996543321 3455566666766554
No 100
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.9e-09 Score=106.11 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=128.9
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEE
Q 009721 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (527)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~ 151 (527)
..+..+...|++|+-..|..|| +...+..+|+-.-. +.--..+--....+.+.+.++|..+-.-.
T Consensus 23 ~~~~~l~~~L~eI~~ALLesDV~~~lV~~l~~nir~~i~-------~~~~~~G~nk~r~i~~~vf~eL~kl~dp~----- 90 (483)
T KOG0780|consen 23 IDETALNTMLKEICRALLESDVNPRLVKELRENIRKIIN-------LEKLASGVNKRRIIQKAVFDELVKLLDPG----- 90 (483)
T ss_pred chHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-------hhhhccccCHHHHHHHHHHHHHHHHhCCC-----
Confidence 3566677788888888777666 33344444432211 11112334456677888888887653211
Q ss_pred eccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccC
Q 009721 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (527)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~ 231 (527)
...+ +.-++.+.||.|+ |-.|+||||++..||+++.++|+||+||-+|..+.....
T Consensus 91 ------~~~~-----~~~K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfD------------ 146 (483)
T KOG0780|consen 91 ------KSAL-----QPKKGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFD------------ 146 (483)
T ss_pred ------Cccc-----ccccCCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHH------------
Confidence 1110 1112334588888 888999999999999999999999999999998754211
Q ss_pred CCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh------hhhhhhcCC
Q 009721 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPL 305 (527)
Q Consensus 232 ~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~------~~~~~~~a~ 305 (527)
+........++.+..++. .........+-.+..+.++||+||+||.+...... ........=
T Consensus 147 ---QLkqnA~k~~iP~ygsyt---------e~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~P 214 (483)
T KOG0780|consen 147 ---QLKQNATKARVPFYGSYT---------EADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKP 214 (483)
T ss_pred ---HHHHHhHhhCCeeEeccc---------ccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCC
Confidence 111111122333333221 11223334444444445899999999987543211 111112234
Q ss_pred CeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009721 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (527)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (527)
|.+++|.....- +.+....+.|+. .+.+-++|+++.+...++
T Consensus 215 d~vi~VmDasiG--Qaae~Qa~aFk~-~vdvg~vIlTKlDGhakG 256 (483)
T KOG0780|consen 215 DEIIFVMDASIG--QAAEAQARAFKE-TVDVGAVILTKLDGHAKG 256 (483)
T ss_pred CeEEEEEecccc--HhHHHHHHHHHH-hhccceEEEEecccCCCC
Confidence 778888765432 223333334443 355678999997655543
No 101
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.88 E-value=5.8e-09 Score=103.30 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=103.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+.||.|+ |-.|+||||+.+.||++|.++|++|++.=+|..+... .++.-.....-|++++...
T Consensus 138 ~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA---------------iEQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 138 KPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA---------------IEQLEVWGERLGVPVISGK 201 (340)
T ss_pred CcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH---------------HHHHHHHHHHhCCeEEccC
Confidence 35689888 8899999999999999999999999999999876431 1111122233577788643
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhh-------c-----CCCeEEEEeCCCcchH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV-------V-----PLTAAVIVTTPQKLAF 319 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~-------~-----a~d~viiV~~p~~~s~ 319 (527)
. |.+.....-+.++.....+||+|||||.+.+..-.-.+..+ - +-+.++++.... .-
T Consensus 202 ~---------G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt--tG 270 (340)
T COG0552 202 E---------GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT--TG 270 (340)
T ss_pred C---------CCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc--cC
Confidence 2 22222333344444444899999999988764321111100 0 112355553322 11
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+++..-.+.|++ -+++.|+|+++++.+..+ +.+-.+...++.|+.+.
T Consensus 271 qnal~QAk~F~e-av~l~GiIlTKlDgtAKG--------G~il~I~~~l~~PI~fi 317 (340)
T COG0552 271 QNALSQAKIFNE-AVGLDGIILTKLDGTAKG--------GIILSIAYELGIPIKFI 317 (340)
T ss_pred hhHHHHHHHHHH-hcCCceEEEEecccCCCc--------ceeeeHHHHhCCCEEEE
Confidence 222333344444 244689999998866655 45667888999887654
No 102
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.87 E-value=5.2e-08 Score=98.40 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=87.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc-cCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
.+++|.|+ |++|+||||++.+|+..+.+.|++|.+|++|++.+-... +++....... ....+++.+.+.
T Consensus 33 ~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 102 (300)
T TIGR00750 33 NAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRSM 102 (300)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeeec
Confidence 45688888 999999999999999999999999999999997653221 1221111100 001234444332
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (527)
+.... +.+ ......+++..+...+||+|||||++ .+...... ...+|.++++..|... .++.....-+.
T Consensus 103 ~~~~~----~~~--~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~~--~el~~~~~~l~ 171 (300)
T TIGR00750 103 PTRGH----LGG--LSQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGTG--DDLQGIKAGLM 171 (300)
T ss_pred Ccccc----ccc--hhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCcc--HHHHHHHHHHh
Confidence 22110 000 11223333333334789999999985 55444333 3356788887765532 33333333222
Q ss_pred cCCCCEEEEEEeccccc
Q 009721 331 KLKVPCIAVVENMCHFD 347 (527)
Q Consensus 331 ~~~~~~~gvV~N~~~~~ 347 (527)
+.+ .-+|+|+++..
T Consensus 172 --~~~-~ivv~NK~Dl~ 185 (300)
T TIGR00750 172 --EIA-DIYVVNKADGE 185 (300)
T ss_pred --hhc-cEEEEEccccc
Confidence 233 35888997643
No 103
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.87 E-value=3.8e-08 Score=101.87 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=93.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH----CCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~----~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl 248 (527)
+++|+++ |+.||||||+++.||..+.. .|++|++|++|.++......+.. .....|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~---------------~a~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT---------------YGDIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH---------------HhhcCCcceE
Confidence 4577776 88999999999999999873 58999999999987543221110 0000122221
Q ss_pred ccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh------hhhhcCCC-eEEEEeCCCcchHHH
Q 009721 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLT-AAVIVTTPQKLAFID 321 (527)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~------~~~~~a~d-~viiV~~p~~~s~~~ 321 (527)
... . ...+...+... .+||+|||||++........ .......+ ..++|+.++.. ..+
T Consensus 238 ~~~------------~-~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AIE------------S-FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred eeC------------c-HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 100 0 12233333333 68999999999854321111 11111112 56666665443 445
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
+.+.++.+..+ +.-++|+++.+..... +.+-.+...++.|+.+
T Consensus 302 ~~~~~~~~~~~--~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~y 344 (388)
T PRK12723 302 VKEIFHQFSPF--SYKTVIFTKLDETTCV--------GNLISLIYEMRKEVSY 344 (388)
T ss_pred HHHHHHHhcCC--CCCEEEEEeccCCCcc--------hHHHHHHHHHCCCEEE
Confidence 55555555544 4569999996644322 4566777777877654
No 104
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.83 E-value=4.1e-08 Score=97.19 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=76.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|+.+.. . .-|. +.............-...... ++
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g~-Ds~~~~~aGa~~v~~~s~~~~-~~---- 70 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDGT-DTGRHFDAGADVVYGLTDGEW-VA---- 70 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCCC-CcHHHHHCCCcEEEEecCCeE-EE----
Confidence 5789999775 9999999999999999999 8999999985411 0 0000 000000000011100000111 11
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCC-eEEEEeCCCcchHHHHHHHHHHHHc
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFIDVAKGVRMFSK 331 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d-~viiV~~p~~~s~~~~~~~~~~l~~ 331 (527)
...... +.+++..+. .+||+||||+.+......+....+...| .++++..|+...+ ..+++.+++
T Consensus 71 ------~~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d~---~~lve~~~~ 136 (274)
T PRK14493 71 ------SGRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLDT---EDLVAALES 136 (274)
T ss_pred ------EecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccCH---HHHHHHHHh
Confidence 001112 334444333 5799999999997653333333344556 6777888877774 344444444
Q ss_pred C
Q 009721 332 L 332 (527)
Q Consensus 332 ~ 332 (527)
.
T Consensus 137 ~ 137 (274)
T PRK14493 137 Q 137 (274)
T ss_pred c
Confidence 3
No 105
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.82 E-value=1.4e-07 Score=91.69 Aligned_cols=190 Identities=17% Similarity=0.137 Sum_probs=109.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCcc-CCCCc---ccc----ccCCCCCceeeeccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPEN---RLL----EMNPEKRTIIPTEYL 243 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~---~~~----~~~~~~~~i~~~~~~ 243 (527)
|++.|-|++.-.|+|||+++..|+..|.++|++|..+-.=..+ .... -+..+ .+. ......+.+.|
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~g--~~~~~~~~~~~D~~~l~~~~~~~~~~~~~~p---- 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKG--SKETPEGLRNKDALVLQSVSSIELPYEAVNP---- 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECccccC--CccCCCCCchHHHHHHHHhcCCCCCHHhccC----
Confidence 5667899999999999999999999999999999998443222 1100 00000 000 00000000100
Q ss_pred CceEEccCCCCCcccccCCc-cHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-----hhhhhhcCCCeEEEEeCCCcc
Q 009721 244 GVKLVSFGFSGQGRAIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQKL 317 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-----~~~~~~~a~d~viiV~~p~~~ 317 (527)
..+...... ...... ......+.+ +.+. .+||+|||++.+|+.... ..-.....-.-+++|+....-
T Consensus 75 --~~~~~~~a~---~~~~~~i~~~~i~~~~-~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg 147 (231)
T PRK12374 75 --IALSEEESS---VAHSCPINYTLMSNGL-ANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEG 147 (231)
T ss_pred --eecCCCcCh---HHcCCcCCHHHHHHHH-HHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcC
Confidence 011111100 000000 112223333 3333 799999999998653221 100001123446777766666
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
++..+.-..+.+...++++.|+|+|++..... ...+..+.+.+..+.+.++.||+.+
T Consensus 148 ~in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~------~~~~~~~~l~~~~~~~~lg~iP~~~ 204 (231)
T PRK12374 148 CINHALLTAQAIANDGLPLIGWVANRINPGLA------HYAEIIDVLGKKLPAPLIGELPYLP 204 (231)
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEEeCccCchh------hhhhHHHHHHHhcCCCEEEEeCCCC
Confidence 77777778888888899999999999753211 1123456777778899999999864
No 106
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.77 E-value=4.3e-08 Score=92.92 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=107.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc-ccCCCCCceeeeccCCceEEccCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL-EMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~-~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
|.|-|++.-.|+|||+++..|+.+|.++|.||.++-.=.++..... +.... ....... +........+....
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~d~----d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPEDDE----DAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCCSS----HHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCCCc----hHHHHHHHhCCCc---ccccccccccCccc
Confidence 4688999999999999999999999999999998754322221000 00000 0000000 00000001111000
Q ss_pred CCCcccccCCccHHHHHHHH-HHhcccCCCCEEEEeCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~IIID~pp~~~~~------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~ 325 (527)
. .............+.++ .+.+. ..+|++||+...+.... ...++.... ..+++|+.....++..+...
T Consensus 74 ~--~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 S--PHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp ---HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred C--HHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0 00000000000113333 24443 69999999998876521 122222222 34677888888889999999
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHH
Q 009721 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLS 383 (527)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~ 383 (527)
++.++..+.++.|+|+|++... +..+.+.+..+.++++.||+++.+.
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~-----------~~~~~l~~~~~i~vlg~iP~~~~L~ 196 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP-----------ENLEALREKSGIPVLGVIPEDPDLS 196 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC-----------HHHHHHHHHHCCEECE---SSTT--
T ss_pred HHHHHhcCCCEEEEEEECCCCH-----------HHHHHHHHhCCCCEEEECCCCcccc
Confidence 9999998999999999995321 4688899999999999999998764
No 107
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.77 E-value=2.6e-07 Score=97.44 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE----------EeccCchhHHhccc
Q 009721 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL----------FDLPIRPTLSASGD 387 (527)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l----------~~IP~~~~i~~a~~ 387 (527)
.+.++.|.++.++++++|+ .|.+|+...+...+ -+.+++++++.|.+.. +.+|+.+.+.++..
T Consensus 357 Gl~NL~RHIenvr~FGvPv-VVAINKFd~DTe~E------i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRKFGVPV-VVAINKFVTDTDAE------IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHHcCCCE-EEEEeCCCCCCHHH------HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 5678888999999999995 57779955443211 1467888899999998 88999999988888
Q ss_pred CCCc--eEeeCCCCHHHHHHHHHHHHHH
Q 009721 388 SGMP--EVAADPCGEVANTFQDLGVCVV 413 (527)
Q Consensus 388 ~g~p--v~~~~p~s~~a~~~~~la~~i~ 413 (527)
.+.+ -..|..+.+..+.++.+|++|.
T Consensus 430 ~~~s~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 430 EGESNFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred cCCCCCceecCCCCcHHHHHHHHHHHcc
Confidence 6554 1345567889999999998875
No 108
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.73 E-value=1.6e-07 Score=105.16 Aligned_cols=178 Identities=17% Similarity=0.220 Sum_probs=101.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
|+|.|.|++...|+|||+++..|+..|.++|+||..+--+.+++.. . .... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p~~-------~---------~~~~-------~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPPLT-------M---------SEVE-------ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCCCC-------H---------HHHH-------HHHhcc
Confidence 5678999999999999999999999999999999999855443100 0 0000 000000
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHHHH--
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFIDVA-- 323 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~------~~~~~~~a~d~viiV~~p~~~s~~~~~-- 323 (527)
. ........+. .+..+. .+||+||||++.+.+... ..++.. -.+-+++|+.++..++.++.
T Consensus 58 ----~----~~~~~~~I~~-~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~-L~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ----Q----LDELLEEIVA-RYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKN-LGAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ----C----ChHHHHHHHH-HHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHH-hCCCEEEEECCCCCChHHHHHH
Confidence 0 0011122222 223333 789999999987655321 111111 13678889988877754433
Q ss_pred --HHHHHHH-cCCCCEEEEEEec--ccccCCCcccccc----C-----CchHHHHHHHhCCCeEEeccCchhHH
Q 009721 324 --KGVRMFS-KLKVPCIAVVENM--CHFDADGKRYYPF----G-----RGSGSQVVQQFGIPHLFDLPIRPTLS 383 (527)
Q Consensus 324 --~~~~~l~-~~~~~~~gvV~N~--~~~~~~~~~~~~~----~-----~~~~~~~~~~~g~~~l~~IP~~~~i~ 383 (527)
...+.+. ..+.++.|+|+|+ +...........+ . ........+..+.++++.||+++.+.
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~~L~ 200 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVDEQGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSPDLI 200 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHHHHHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCccccC
Confidence 3334444 4468899999999 4322111000000 0 00001123345788999999998544
No 109
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.71 E-value=1e-07 Score=105.34 Aligned_cols=163 Identities=16% Similarity=0.174 Sum_probs=96.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH-HCC-CcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
.++|+|+ |-.||||||+.+.||..+. ..| ++|.++++|.++......+ . ......++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL------~---------~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQL------R---------IYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHH------H---------HHHHhCCCCcccc
Confidence 4689988 8899999999999999885 566 6999999998764321100 0 0001112221110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC-hhh-hh----hhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-LT----LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~-~~~-~~----~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
. . . ..+...++.+ .+||+|||||++-.. +.. .. +.....-+.+++|+.... ...++..
T Consensus 249 ~---------~---~-~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 K---------D---A-ADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred C---------C---H-HHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 0 1 1 1234444443 588999999988332 111 11 111122356677776553 3456666
Q ss_pred HHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 325 GVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 325 ~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+++.|+.. +.++.|+|+++.+..... +.+-.+...++.|+.+.
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~~~--------G~iL~i~~~~~lPI~yi 356 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEATHL--------GPALDTVIRHRLPVHYV 356 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCCCc--------cHHHHHHHHHCCCeEEE
Confidence 77777654 346779999996644322 45667777777776543
No 110
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.70 E-value=2.3e-07 Score=99.35 Aligned_cols=197 Identities=18% Similarity=0.172 Sum_probs=101.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC-CCCCCCccCCCCcc---ccc----cCCCCCceeeecc--C--
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV-YGPSLPTMVSPENR---LLE----MNPEKRTIIPTEY--L-- 243 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~-~~~s~~~~lg~~~~---~~~----~~~~~~~i~~~~~--~-- 243 (527)
|.|++.-.+||||++++.|+..|.++|++|..+-.=. ..++....-+.+.. ... .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 4578888999999999999999999999999875531 11111000011110 000 0000111111110 0
Q ss_pred -CceEEccCCCCC--cccccCC---ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh--------hhhhhhhcCCCeEE
Q 009721 244 -GVKLVSFGFSGQ--GRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAV 309 (527)
Q Consensus 244 -gl~vl~~~~~~~--~~~~~~~---~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--------~~~~~~~~a~d~vi 309 (527)
...++-.+.... ....+.. ......+.+.+..+. .+||+||||+++|+.+. ...++....++ ++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap-VI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD-AI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-EE
Confidence 011111111000 0000000 111233344444443 68999999999876541 12222233344 55
Q ss_pred EEeCCCcchH-HHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 310 IVTTPQKLAF-IDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 310 iV~~p~~~s~-~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
+|+.....+. ..+...+..++.. +..+.|+|+|++..+. ...++..+.+.+..|+|+++.+|+.+
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~------~~~~~~~~~l~e~~gipvLG~ip~~~ 225 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNV------DVLKSGIEKLEELTGIPVLGVLPYDE 225 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcH------HHHHHHHHHHHHhhCCCEEEEecCCC
Confidence 6666655433 3444445554442 2578999999965321 11124556667778999999999864
No 111
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.67 E-value=7.9e-07 Score=84.69 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=115.8
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc-ccccCCCCCceeeeccCCceEEcc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
||+.+-|++.--|||||.+|..|+.+|..+|++|...-.=..|..-... +.+.. +....... ......+.+.+..
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~-~~D~~~l~~~~~~~---~~~~~~~py~f~~ 76 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAE-NSDALVLQRLSGLD---LSYELINPYRFKE 76 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCC-CchHHHHHHhcCCC---cccccccceecCC
Confidence 6789999999999999999999999999999999886432222110000 00000 00000000 0001112222321
Q ss_pred CCCCCcccccCCc-cHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh---hhhhhh--cCCCeEEEEeCCCcchHHHHHH
Q 009721 251 GFSGQGRAIMRGP-MVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQV--VPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 251 ~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~---~~~~~~--~a~d~viiV~~p~~~s~~~~~~ 324 (527)
+....-.....+. .....+..-+..+. ..||+|||-..+|+-... .++..+ .-..-+++|+....-++..+.-
T Consensus 77 P~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHtlL 155 (223)
T COG0132 77 PLSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHTLL 155 (223)
T ss_pred CCCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHHHH
Confidence 1111111111011 11223333333333 699999999999864211 111111 1124578889999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhH
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (527)
.++.++..++++.|+|.|......... ......+.+..+.|.++.+|+.+..
T Consensus 156 t~eal~~~gl~l~G~I~n~~~~~~~~~------~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 156 TVEALRARGLPLAGWVANGINPELDHY------AEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred HHHHHHHCCCCEEEEEEccCCCchhHH------HHHHHHHHHhcCCCccccccCCccc
Confidence 999999999999999999854322111 0122357778899999999986543
No 112
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2e-07 Score=91.93 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=96.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
..+|+|. |++|+||||+...+|..+..+|++|.++++|.++...... +. ......++.+...
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~q------l~---------~~~~~~~~~~~~~-- 136 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQ---------DYVKTIGFEVIAV-- 136 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH------HH---------HHhhhcCceEEec--
Confidence 3578888 7799999999999999999889999999999876221100 00 0000112333321
Q ss_pred CCCcccccCCccHHHHHHHHHHhcc-cCCCCEEEEeCCCCCC--hhhh----hhhhhcCCCeEEEEeCCCcchHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~IIID~pp~~~--~~~~----~~~~~~a~d~viiV~~p~~~s~~~~~~~ 325 (527)
... ..+.+.++.+. ..+||+|||||++... ...+ .......-+.+++|+.+.. ...++...
T Consensus 137 -------~~~----~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~~ 204 (270)
T PRK06731 137 -------RDE----AAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEI 204 (270)
T ss_pred -------CCH----HHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHHH
Confidence 011 12223333221 2579999999998653 1111 1111223456666766543 23455566
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
++.|+. +.+-++|+++.+...+. +.+-.+....+.|+.+.
T Consensus 205 ~~~f~~--~~~~~~I~TKlDet~~~--------G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 205 ITNFKD--IHIDGIVFTKFDETASS--------GELLKIPAVSSAPIVLM 244 (270)
T ss_pred HHHhCC--CCCCEEEEEeecCCCCc--------cHHHHHHHHHCcCEEEE
Confidence 667766 45579999996644322 45667777788876653
No 113
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.63 E-value=6.8e-07 Score=90.73 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=88.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc-cCCCCccccccCCCCCceeeeccCCceEEc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~-~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
+.+.+|.|+ |-.|+||||++..|+..|...|++|.+|..||+.+-+.. ++|....... ....++..+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~---------~~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER---------LSRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh---------hcCCCCeEEEe
Confidence 345688888 779999999999999999999999999999997653221 2221111100 01223333443
Q ss_pred cCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHH-HHH
Q 009721 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAK-GVR 327 (527)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~-p~~~s~~~~~~-~~~ 327 (527)
.+.... + ......+.+.+..+...+||+|||||++--. ....+ ...+|.+++|+. +....+..... .++
T Consensus 124 ~~~~~~----l--~~~a~~~~~~~~~~~~~g~d~viieT~Gv~q-s~~~i--~~~aD~vlvv~~p~~gd~iq~~k~gi~E 194 (332)
T PRK09435 124 SPSSGT----L--GGVARKTRETMLLCEAAGYDVILVETVGVGQ-SETAV--AGMVDFFLLLQLPGAGDELQGIKKGIME 194 (332)
T ss_pred cCCccc----c--cchHHHHHHHHHHHhccCCCEEEEECCCCcc-chhHH--HHhCCEEEEEecCCchHHHHHHHhhhhh
Confidence 221110 0 1123344444444444789999999987332 22222 335788888886 44455555443 222
Q ss_pred HHHcCCCCEEEEEEeccccc
Q 009721 328 MFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 328 ~l~~~~~~~~gvV~N~~~~~ 347 (527)
.. . -+|+|+++..
T Consensus 195 ~a---D----IiVVNKaDl~ 207 (332)
T PRK09435 195 LA---D----LIVINKADGD 207 (332)
T ss_pred hh---h----eEEeehhccc
Confidence 22 1 4888997643
No 114
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=6.8e-07 Score=91.90 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=90.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH-HCC-CcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
..+|+|+ |..||||||+++.||..+. +.| ++|.+|.+|.+...... .+. ......|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~E------qL~---------~~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHE------QLR---------IFGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHH------HHH---------HHHHHcCCceEec
Confidence 4578877 8999999999999999886 457 69999999998642110 000 0001112222211
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC--hhhh-hhhhh---cCCCeEEEEeCCCcchHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQV---VPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~--~~~~-~~~~~---~a~d~viiV~~p~~~s~~~~~~ 324 (527)
. ........+.++ .++|+|||||++-.. .... .+..+ ......++|+.+.. ....+..
T Consensus 201 ~---------~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 K---------DGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred C---------CcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 0 111122223322 678999999987432 1111 11111 12234566666544 3344445
Q ss_pred HHHHHHcCC-------CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 325 GVRMFSKLK-------VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 325 ~~~~l~~~~-------~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.++.+.... .++.|+|+++.+..... +.+-.+....+.|+.+.
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~yv 314 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEASNL--------GGVLDTVIRYKLPVHYV 314 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCCCc--------cHHHHHHHHHCcCeEEE
Confidence 555555432 13579999996643322 45666777777776553
No 115
>PRK00784 cobyric acid synthase; Provisional
Probab=98.59 E-value=8e-07 Score=95.74 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=102.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCC---cc---ccc----cCCCCCceeeec
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---NR---LLE----MNPEKRTIIPTE 241 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~---~~---~~~----~~~~~~~i~~~~ 241 (527)
||+.|.|++...|||||++++.|+..|.++|++|..+-. ++.+.....+.+ .. ... .......+.|
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~~~Da~~l~~~~~~~~~~~~i~P-- 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNP-- 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCeeHHHHHHHHHhCCCCchhccCC--
Confidence 577899999999999999999999999999999998743 321111111100 00 000 0000001111
Q ss_pred cCCceEEccCCCCCccccc--------------C-CccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh--------hhh
Q 009721 242 YLGVKLVSFGFSGQGRAIM--------------R-GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLT 298 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~--------------~-~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--------~~~ 298 (527)
.++............ . .......+.+.+..+. .+||++||+...|.-.. ...
T Consensus 77 ----~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~d 151 (488)
T PRK00784 77 ----VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMG 151 (488)
T ss_pred ----EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHH
Confidence 111100000000000 0 1112223333333333 68999999987443211 112
Q ss_pred hhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEec
Q 009721 299 LCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDL 376 (527)
Q Consensus 299 ~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~I 376 (527)
++.... .-+++|+..... ++..+...++.+.. .+.++.|+|+|++..+. ..-++..+.+.+..++|+++.|
T Consensus 152 lak~l~-~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~------~~~~~~~~~l~~~~gipvLG~i 224 (488)
T PRK00784 152 FAEAAD-APVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDI------SLLEPGLDWLEELTGVPVLGVL 224 (488)
T ss_pred HHHHcC-CCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCH------HHHHHHHHHHHHhcCCCEEEEc
Confidence 222222 234556655444 35555544555553 35689999999976321 1112345557777899999999
Q ss_pred cCchh
Q 009721 377 PIRPT 381 (527)
Q Consensus 377 P~~~~ 381 (527)
|+++.
T Consensus 225 P~~~~ 229 (488)
T PRK00784 225 PYLDD 229 (488)
T ss_pred CCCcC
Confidence 99764
No 116
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.56 E-value=6.6e-08 Score=96.68 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=37.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-C-CcEEEEEeCCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 215 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G-~rVllID~D~~~~ 215 (527)
.++|+|+ |.+||||||++++||..++.+ | ++|.+|++|++..
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4688888 679999999999999999976 5 9999999999874
No 117
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.55 E-value=1.8e-06 Score=84.40 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=95.4
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC-CccCCCCccccccCCCCCceeeeccCCceEE
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~-~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl 248 (527)
.+.+.+|.|+ |-+|+||||+.-.|...|.++|+||.+|--||..+-+ ..++|-.-... .....+|+++-
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~---------~~~~~~~vFiR 117 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQ---------RLAVDPGVFIR 117 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHH---------hhccCCCeEEe
Confidence 3556799999 8899999999999999999999999999999965432 12233211111 11124677777
Q ss_pred ccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCC-CCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHH
Q 009721 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV 326 (527)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp-~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~ 326 (527)
|.+..+.-- .++.....++..++-..||+|||.|-+ |-++... ...+|.+++++.|..- .++..+..+
T Consensus 118 s~~srG~lG------GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I----~~~aDt~~~v~~pg~GD~~Q~iK~Gi 187 (323)
T COG1703 118 SSPSRGTLG------GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI----ANMADTFLVVMIPGAGDDLQGIKAGI 187 (323)
T ss_pred ecCCCccch------hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH----hhhcceEEEEecCCCCcHHHHHHhhh
Confidence 755433211 123344444444444799999999976 4444433 2346899999998765 344444443
Q ss_pred HHHHcCCCCEEEEEEeccc
Q 009721 327 RMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~ 345 (527)
-.+.. -+|+|+.+
T Consensus 188 mEiaD------i~vINKaD 200 (323)
T COG1703 188 MEIAD------IIVINKAD 200 (323)
T ss_pred hhhhh------eeeEeccC
Confidence 32222 46889955
No 118
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.52 E-value=7.5e-07 Score=94.40 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=88.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH-HCC-CcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G-~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
++||+|+ |-.||||||++++||..+. ++| ++|.+|++|.++.... ..+.. .....|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~------EQLr~---------~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGH------EQLRI---------YGKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHH------HHHHH---------HHHHhCCCeecc
Confidence 4689988 8899999999999999886 556 5999999998763210 00000 000111111110
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC-hhh-hhhhhhc-C---CCeEEEEeCCCcchHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-LTLCQVV-P---LTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~-~~~-~~~~~~~-a---~d~viiV~~p~~~s~~~~~~ 324 (527)
. .. ......+. .+ .++|+++|||++... +.. .....+. . -...++|+... .....+.+
T Consensus 320 ~---------~~---~Dl~~aL~-~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt-~~~~~l~~ 383 (484)
T PRK06995 320 K---------DA---ADLRLALS-EL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT-SHGDTLNE 383 (484)
T ss_pred C---------Cc---hhHHHHHH-hc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC-CcHHHHHH
Confidence 0 00 01111222 22 678999999965221 110 0111111 1 12244554432 33455666
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.++.++..+ +.|+|+|+.+..... +.+-.+...++.|+.+.
T Consensus 384 i~~~f~~~~--~~g~IlTKlDet~~~--------G~~l~i~~~~~lPI~yv 424 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDEAASL--------GGALDVVIRYKLPLHYV 424 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCCcccc--------hHHHHHHHHHCCCeEEE
Confidence 666666654 469999996644322 45667777778776543
No 119
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.45 E-value=3.5e-06 Score=89.78 Aligned_cols=197 Identities=20% Similarity=0.192 Sum_probs=104.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~~ 255 (527)
|.|++...||||||+++.|+.+|+++|+||..+-.- +. . .+..+... +......+++..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g---~d---~--~D~~~~~~------~~g~~~~~ld~~------- 60 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVG---PD---Y--IDPMFHTQ------ATGRPSRNLDSF------- 60 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccC---CC---C--CCHHHHHH------HhCCchhhCCcc-------
Confidence 678889999999999999999999999999999752 11 0 01100000 000000111100
Q ss_pred cccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHH-
Q 009721 256 GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG- 325 (527)
Q Consensus 256 ~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~---------~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~- 325 (527)
.. ....+.+.+..+. .++|++||....|+-+ ....++.... .-+++|+..... ...+..+
T Consensus 61 ---~~----~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~-~pVILV~~~~~~-~~t~~al~ 130 (449)
T TIGR00379 61 ---FM----SEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALD-APIVLVMNCQRL-SRSAAAIV 130 (449)
T ss_pred ---cC----CHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhC-CCEEEEECCchH-HHHHHHHH
Confidence 00 1233444444433 6899999998855421 1122222221 234555554421 1222222
Q ss_pred --HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHh-cc-cCCCceEeeCCCCHH
Q 009721 326 --VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSA-SG-DSGMPEVAADPCGEV 401 (527)
Q Consensus 326 --~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~-a~-~~g~pv~~~~p~s~~ 401 (527)
...+ ..++++.|+|+|++..+. ++ ....+.+.+..++|+++.||+++.+.- .- .-..|..+ ....
T Consensus 131 ~~~~~~-~~~i~i~GvIlN~v~~~~----~~---~~~~~~i~~~~gipvLG~IP~~~~l~~p~rhLgLv~~~e---~~~~ 199 (449)
T TIGR00379 131 LGYRSF-DPGVKLKGVILNRVGSER----HL---EKLKIAVEPLRGIPILGVIPRQQDLKVPDRHLGLVPAGE---REII 199 (449)
T ss_pred HHHHhh-CCCCCEEEEEEECCCCHH----HH---HHHHHHHHHhCCCCEEEEecCccccCCCCcccCCCChhh---hhhH
Confidence 2222 237889999999975321 11 123445556679999999999986542 11 11223333 2334
Q ss_pred HHHHHHHHHHHHH
Q 009721 402 ANTFQDLGVCVVQ 414 (527)
Q Consensus 402 a~~~~~la~~i~~ 414 (527)
.+.+..+++.+.+
T Consensus 200 ~~~~~~~~~~~~~ 212 (449)
T TIGR00379 200 QQIFDWLAEVVEK 212 (449)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666655444
No 120
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.34 E-value=2e-06 Score=82.99 Aligned_cols=149 Identities=18% Similarity=0.220 Sum_probs=83.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-ccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~-~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
...+|.|+ |-+|+||||+.-.|+..|.+.|+||.++-.||..+-+. .+||-.-+.. .....+|+++-|.
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~---------~~~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQ---------ELSRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCH---------HHHTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhc---------CcCCCCCEEEeec
Confidence 35799998 88999999999999999999999999999999755332 2333221111 1123467777775
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF 329 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l 329 (527)
.....-- .+.......+..++.-.||+|||-|-+ .|..-..+ ...+|.+++|+.|..- .++..+..+-.+
T Consensus 98 atRG~lG------Gls~~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I--~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi 168 (266)
T PF03308_consen 98 ATRGSLG------GLSRATRDAVRLLDAAGFDVIIIETVG-VGQSEVDI--ADMADTVVLVLVPGLGDEIQAIKAGIMEI 168 (266)
T ss_dssp ---SSHH------HHHHHHHHHHHHHHHTT-SEEEEEEES-SSTHHHHH--HTTSSEEEEEEESSTCCCCCTB-TTHHHH
T ss_pred CcCCCCC------CccHhHHHHHHHHHHcCCCEEEEeCCC-CCccHHHH--HHhcCeEEEEecCCCccHHHHHhhhhhhh
Confidence 5433211 122334444444444689999999966 33322333 3456999999999664 333333333222
Q ss_pred HcCCCCEEEEEEeccc
Q 009721 330 SKLKVPCIAVVENMCH 345 (527)
Q Consensus 330 ~~~~~~~~gvV~N~~~ 345 (527)
. --+|+|+.+
T Consensus 169 a------Di~vVNKaD 178 (266)
T PF03308_consen 169 A------DIFVVNKAD 178 (266)
T ss_dssp -------SEEEEE--S
T ss_pred c------cEEEEeCCC
Confidence 2 247889965
No 121
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=4.5e-06 Score=85.75 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=97.3
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCC-ccccccCCCCCceeeeccCCceEEc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE-NRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~-~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
+.+-+|+|+ |-.||||||--+.+|+||-+.++||++.-||+.++..-.-++.. .++.. ....-+.++.
T Consensus 376 krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~----------l~~~~v~lfe 444 (587)
T KOG0781|consen 376 KRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA----------LHGTMVELFE 444 (587)
T ss_pred CCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH----------hccchhHHHh
Confidence 456789988 88999999999999999999999999999999875421111100 00000 0001122222
Q ss_pred cCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh------hhhhcCCCeEEEEeCC--CcchHHH
Q 009721 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQVVPLTAAVIVTTP--QKLAFID 321 (527)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~------~~~~~a~d~viiV~~p--~~~s~~~ 321 (527)
.|+. .+.....++.++......||+|+|||.+.+.+..-. +.....-|.++.|-+. ...++..
T Consensus 445 kGYg---------kd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q 515 (587)
T KOG0781|consen 445 KGYG---------KDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQ 515 (587)
T ss_pred hhcC---------CChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHH
Confidence 2332 223455667777666689999999999876542211 1112345777777554 3446666
Q ss_pred HHHHHHHHHcCCCC--EEEEEEeccc
Q 009721 322 VAKGVRMFSKLKVP--CIAVVENMCH 345 (527)
Q Consensus 322 ~~~~~~~l~~~~~~--~~gvV~N~~~ 345 (527)
+..+-+.+.....+ +.|+|+++++
T Consensus 516 ~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 516 LKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHhcCCCccccceEEEEecc
Confidence 66666666655432 6799999854
No 122
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.23 E-value=2.4e-05 Score=80.29 Aligned_cols=168 Identities=22% Similarity=0.248 Sum_probs=96.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC--CCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG--PSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~--~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
.|.+.+..-|+||||++..|..+|+++|++|--+-.-|.- |+.+.. +.-....|||..-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~----------------atG~~srNLD~~m--- 62 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTA----------------ATGRPSRNLDSWM--- 62 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhH----------------hhCCccCCCchhh---
Confidence 4778889999999999999999999999888655443311 111100 0001112333221
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcchHH--H
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKLAFI--D 321 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~---------~~~~~~~~a~d~viiV~~p~~~s~~--~ 321 (527)
+....+++++.... ++.|+.||..--|+-|- +..++.+.. .-+++|+.....+.. .
T Consensus 63 -----------m~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AA 129 (451)
T COG1797 63 -----------MGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAA 129 (451)
T ss_pred -----------cCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHH
Confidence 11234555544433 67888887554433221 111111111 336778877766543 3
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHH-hCCCeEEeccCchhHH
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQ-FGIPHLFDLPIRPTLS 383 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~l~~IP~~~~i~ 383 (527)
+.+..+.++. ++++.|||+||+.... ++ +.+++..+. .|+++++.||.++.+.
T Consensus 130 iv~G~~~fdp-~v~iaGVIlNrVgser----H~----~llr~Ale~~~gv~vlG~lpr~~~l~ 183 (451)
T COG1797 130 IVKGFKHFDP-DVNIAGVILNRVGSER----HY----ELLRDALEEYTGVPVLGYLPRDDDLE 183 (451)
T ss_pred HHHHHHhcCC-CCceEEEEEecCCCHH----HH----HHHHHHhhhcCCCcEEEEecCCcccC
Confidence 3333444432 5778999999976332 22 345555555 6899999999988643
No 123
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.20 E-value=1.5e-05 Score=81.58 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=88.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH--HCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
.++|+++ |--||||||+-+.||+.++ ...+||.+|-+|.++-.... .+... ...-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E------QLk~Y---------a~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE------QLKTY---------ADIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH------HHHHH---------HHHhCCceEE-
Confidence 6899999 7789999999999999999 44589999999998732111 00000 0011222211
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCC-Chhhh-----hhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGT-GDIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~-~~~~~-----~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
......+...+..+ .+||+|+|||.+.- -+... .+........+.+|+.. -....++..
T Consensus 266 --------v~~~~el~~ai~~l------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa-t~K~~dlke 330 (407)
T COG1419 266 --------VYSPKELAEAIEAL------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA-TTKYEDLKE 330 (407)
T ss_pred --------ecCHHHHHHHHHHh------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec-CcchHHHHH
Confidence 11122223333333 68899999997632 12110 01101112233344333 334566777
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
+++.|..+++ -|+|+++.+-... -+.+=.+..+.+.|+.+
T Consensus 331 i~~~f~~~~i--~~~I~TKlDET~s--------~G~~~s~~~e~~~PV~Y 370 (407)
T COG1419 331 IIKQFSLFPI--DGLIFTKLDETTS--------LGNLFSLMYETRLPVSY 370 (407)
T ss_pred HHHHhccCCc--ceeEEEcccccCc--------hhHHHHHHHHhCCCeEE
Confidence 7777776554 6999999543221 13444455555665544
No 124
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.91 E-value=0.00031 Score=74.83 Aligned_cols=168 Identities=12% Similarity=0.029 Sum_probs=96.3
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEc
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
++.|+.|.|++...|+||||+|+.|+.+|.++ |..+-..+.. .+ +. +..+.++
T Consensus 235 ~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~-------------id-------~~----p~~~~~~ 287 (476)
T PRK06278 235 RNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDV-------------RD-------IV----PSLYLLR 287 (476)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCCh-------------hh-------cC----Ccceecc
Confidence 34567899999999999999999999999975 6655532100 00 00 0111111
Q ss_pred cCCCCCccc---ccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcc
Q 009721 250 FGFSGQGRA---IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKL 317 (527)
Q Consensus 250 ~~~~~~~~~---~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~---------~~~~~~~a~d~viiV~~p~~~ 317 (527)
......... .....+....+..+. ...+|++||....|+-+.. ..++.... .-+++|+.....
T Consensus 288 ~~~sp~~a~n~~~d~~~~~~~~~~~~~----~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~g 362 (476)
T PRK06278 288 EKMTKYNSIKIGDRGWSDVEEFLEFVK----NSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSKS 362 (476)
T ss_pred cccCChHHHhhcCCcccCHHHHHHHHH----hcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCCC
Confidence 000000000 000012223344421 2468999999987765431 11211221 346778888777
Q ss_pred hHHHHHH----HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecc
Q 009721 318 AFIDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (527)
Q Consensus 318 s~~~~~~----~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (527)
++..+.. ..++++..++++.|+|+|++... .+ .+.++++.+..|+|+++.++
T Consensus 363 ~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~----~~----~~~~~~~le~~gvpVLG~~~ 418 (476)
T PRK06278 363 GIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNM----EI----FEKVKKIAENSNINLIGVGK 418 (476)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcH----HH----HHHHHHHHHhcCCCEEEecc
Confidence 7544433 34556666889999999997521 11 14456777778999999944
No 125
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.84 E-value=0.00019 Score=75.63 Aligned_cols=169 Identities=16% Similarity=0.133 Sum_probs=94.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
|+.|.|++...|+||||++..|+.+|.++|.+|-.+-..+..- +..... .+......+++-.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--------D~~~~~------~~~g~~~~nld~~---- 62 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--------DPSHHE------AVAGRPSRTLDPW---- 62 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--------CHHHHH------HHhCCCcccCChh----
Confidence 3468889999999999999999999999999998877633210 000000 0000000122100
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh----hhhhhhcCCCeEEEEeCCCcch--HHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLA--FIDVAKGV 326 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~----~~~~~~~a~d~viiV~~p~~~s--~~~~~~~~ 326 (527)
+. + ...+.+... +..+|++||....|+-+.. ..++.... --+++|+.....+ +..+...+
T Consensus 63 ------~~-~---~~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 63 ------LS-G---EDGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred ------hC-C---HHHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHH
Confidence 00 1 122333322 2459999999988764322 11111111 2467777776664 33333443
Q ss_pred HHHHc---CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhH
Q 009721 327 RMFSK---LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (527)
Q Consensus 327 ~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (527)
..+.. .++++.|||+|++... .+. +.+++..+. +++.++.||..+.+
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~~----~h~----~~l~~~~~~-~i~vlG~lP~~~~~ 178 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHGG----RHA----DGIRDALPD-ELTYFGRIPPRDDL 178 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCcH----HHH----HHHHHhhhh-cCceeEecccCCCC
Confidence 33333 3788999999996431 110 122333333 68999999988754
No 126
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.79 E-value=0.00019 Score=71.40 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=66.5
Q ss_pred ccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 277 ~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.|+.|++.|||||+...........+..+|.+++|+.+...........++.+...+.+.+ +++|+++.....
T Consensus 60 ~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~------ 132 (268)
T cd04170 60 EWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRERAD------ 132 (268)
T ss_pred EECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccCCCC------
Confidence 3578899999999864322223333567899999998887666666777788888888755 688997643321
Q ss_pred CCchHHHHHHHhCCCeE-EeccCch
Q 009721 357 GRGSGSQVVQQFGIPHL-FDLPIRP 380 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~l-~~IP~~~ 380 (527)
.....+++.+.++.+.+ ..+|...
T Consensus 133 ~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 133 FDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHHhCCCeEEEEecccC
Confidence 12457788888887654 5577654
No 127
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00069 Score=71.02 Aligned_cols=160 Identities=15% Similarity=0.139 Sum_probs=88.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH-HC-CCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA-~~-G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
+.+|+++ |..|+||||+...||..+. .. +.+|.++-+|.+.-.... .+ .......|+.+...
T Consensus 191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalE------QL---------~~~a~ilGvp~~~v 254 (420)
T PRK14721 191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHE------QL---------RIYGKLLGVSVRSI 254 (420)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHH------HH---------HHHHHHcCCceecC
Confidence 4689988 9999999999999998664 33 478899988876532100 00 00001112222210
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh----hhhhhh---cCCCeEEEEeCCCcchHHHHH
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQV---VPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~----~~~~~~---~a~d~viiV~~p~~~s~~~~~ 323 (527)
. .. .. +...+..+ .++|+|+|||+ |..... -.+..+ ......++|+... ....++.
T Consensus 255 ~---------~~---~d-l~~al~~l--~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~~~ 317 (420)
T PRK14721 255 K---------DI---AD-LQLMLHEL--RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDTLD 317 (420)
T ss_pred C---------CH---HH-HHHHHHHh--cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHHHH
Confidence 0 01 11 11222222 68999999996 444311 011111 1123455665544 3445566
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.++..++..+ +.++|+++.+-.... +.+-.+...++.|+.+.
T Consensus 318 ~~~~~f~~~~--~~~~I~TKlDEt~~~--------G~~l~~~~~~~lPi~yv 359 (420)
T PRK14721 318 EVISAYQGHG--IHGCIITKVDEAASL--------GIALDAVIRRKLVLHYV 359 (420)
T ss_pred HHHHHhcCCC--CCEEEEEeeeCCCCc--------cHHHHHHHHhCCCEEEE
Confidence 7777776544 569999996643322 45666777777766543
No 128
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.73 E-value=0.00058 Score=66.57 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=62.8
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.++|||+...........+..+|.+++|+.....-.......++.++..+.+.+ +++|+++..... +
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~-----~- 133 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRAGAD-----L- 133 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccccCCC-----H-
Confidence 577889999998654322222333556799999987765444556777888888888865 788997644211 1
Q ss_pred CchHHHHHHHhCCCeE-Eecc
Q 009721 358 RGSGSQVVQQFGIPHL-FDLP 377 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP 377 (527)
...++++.+.++...+ .++|
T Consensus 134 ~~~~~~i~~~~~~~~~~~~~p 154 (237)
T cd04168 134 EKVYQEIKEKLSSDIVPMQKV 154 (237)
T ss_pred HHHHHHHHHHHCCCeEEEECC
Confidence 2578899999986544 3455
No 129
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.65 E-value=0.0029 Score=62.91 Aligned_cols=97 Identities=19% Similarity=0.096 Sum_probs=64.3
Q ss_pred ccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 277 ~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.|+++.+.+||||+...........+..+|.+++|+.....-.....+.++.+...+.+.+ +++|+++.....
T Consensus 60 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~------ 132 (270)
T cd01886 60 FWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD------ 132 (270)
T ss_pred EECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------
Confidence 3578899999998754322222334557799999988765444556678888888888876 688997643211
Q ss_pred CCchHHHHHHHhCCC-eEEeccCch
Q 009721 357 GRGSGSQVVQQFGIP-HLFDLPIRP 380 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~-~l~~IP~~~ 380 (527)
.....+++.+.++.. +...+|...
T Consensus 133 ~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 133 FFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHHhCCCceEEEecccc
Confidence 113577888888754 344577654
No 130
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.56 E-value=0.00054 Score=66.19 Aligned_cols=45 Identities=22% Similarity=0.205 Sum_probs=37.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~ 219 (527)
.+|.|. |-.|+||||....|-.++...+.+--+|.+||.-..++.
T Consensus 20 ~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy 64 (366)
T KOG1532|consen 20 VIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPY 64 (366)
T ss_pred cEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCC
Confidence 456666 889999999999999999998888999999996655443
No 131
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=97.48 E-value=0.0002 Score=75.18 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=45.5
Q ss_pred cceEEEEeeCcC---CChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc
Q 009721 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (527)
Q Consensus 172 ~~kvIav~s~KG---GvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~ 225 (527)
..|+|.|+|.-. |.||||+++|||..|++.|+||+++ .+.|++...||...
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kg 90 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKG 90 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCC
Confidence 468999999999 9999999999999999999999988 77888888877543
No 132
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.44 E-value=0.0018 Score=64.32 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=60.6
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.++|||+...........+..+|.+++|+.....-.....+.++.++..+.++ -+++|+++..... .
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~~~a~------~ 140 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDREGRD------P 140 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCccCCCC------H
Confidence 57889999999874322222223355689999998775533344556677777778884 4677997643211 1
Q ss_pred CchHHHHHHHhCCCeE-EeccCc
Q 009721 358 RGSGSQVVQQFGIPHL-FDLPIR 379 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~~ 379 (527)
...++++.+.++.+.+ ..+|..
T Consensus 141 ~~~~~~l~~~l~~~~~~~~~Pi~ 163 (267)
T cd04169 141 LELLDEIEEELGIDCTPLTWPIG 163 (267)
T ss_pred HHHHHHHHHHHCCCceeEEeccc
Confidence 1347888888987654 446653
No 133
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.42 E-value=0.0012 Score=59.98 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=36.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
||++++|+ |.-|+||||+.-.|...|.++|+||.+|--...+
T Consensus 1 m~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 68899999 5556899999999999999999999999776544
No 134
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.41 E-value=0.00062 Score=65.55 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=34.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|++|.|++. -|+||||++.+|+..|.++|+||.+|..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 578999966 49999999999999999999999999764
No 135
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.36 E-value=0.00063 Score=61.74 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
||+|+ |.-|+||||++..|+..|..+|+||.+|..|..
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 46667 556999999999999999999999999998743
No 136
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.35 E-value=0.00034 Score=74.19 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=45.4
Q ss_pred cceEEEEeeCcC---CChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCC
Q 009721 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (527)
Q Consensus 172 ~~kvIav~s~KG---GvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~ 224 (527)
..|+|.|+|.-. |.||||+|+|||..|++.|+|| ||+ .+.|++...||..
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~k 105 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVK 105 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCC
Confidence 468999999999 9999999999999999999999 888 9999998887654
No 137
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.32 E-value=0.0016 Score=66.63 Aligned_cols=41 Identities=39% Similarity=0.423 Sum_probs=35.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
++++.++ -++||||+++-||-.+-.+|+||.+||+|+-.+.
T Consensus 75 ~vmvvG~-vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~e 115 (398)
T COG1341 75 VVMVVGP-VDSGKSTLTTYLANKLLARGRKVAIIDADVGQSE 115 (398)
T ss_pred EEEEECC-cCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcc
Confidence 6777744 4699999999999999999999999999997655
No 138
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.21 E-value=0.0023 Score=61.17 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=42.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+...........+..+|.+++|+...........+.++.+...+.+ +-+|+|+++.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 457899999998543323333335577999999876543323344555555555666 4578899763
No 139
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.16 E-value=0.0026 Score=60.08 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=48.3
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++++.+++||||+...........+..+|.+++|+.....-.......+.++...+.+.+-+++|+++.
T Consensus 62 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 62 TANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 356788999998743222223334557899999988766444556677888888888766678899764
No 140
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.00098 Score=63.46 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=34.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.|+ |.+|+|||+++.++|...++.|.+|++||++-
T Consensus 13 ~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456665 89999999999999999999999999999984
No 141
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.09 E-value=0.0025 Score=66.43 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|++|+|++.| |+||||+..+|...|.++|+||.+|--|.
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 5799999666 99999999999999999999999976543
No 142
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.06 E-value=0.0015 Score=58.27 Aligned_cols=42 Identities=31% Similarity=0.261 Sum_probs=32.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEE-EEEeCCCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGPS 216 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVl-lID~D~~~~s 216 (527)
++|+|++.| |+||||++..|...|.++|+||. +.|.|...+.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcc
Confidence 378888665 89999999999999999999999 7899984433
No 143
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0052 Score=55.09 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=33.6
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+|++.|.++ |.+||||||++..+|-.|.+.|++|.-+=+
T Consensus 3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 456678877 999999999999999999999999976644
No 144
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.03 E-value=0.0014 Score=62.07 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=35.4
Q ss_pred CcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc
Q 009721 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (527)
Q Consensus 181 ~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~ 219 (527)
|-+|+||||-+..+...|+..|.+|.+|-+||..-.++.
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y 47 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPY 47 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCC
Confidence 889999999999999999999999999999997765543
No 145
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.001 Score=60.39 Aligned_cols=51 Identities=25% Similarity=0.238 Sum_probs=42.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 223 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~ 223 (527)
.+.+|-|+ |-.|+||||+|..|+..|-++|++|-++|.|.-+..+..-+|.
T Consensus 22 ~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgF 72 (197)
T COG0529 22 KGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGF 72 (197)
T ss_pred CCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCC
Confidence 34577777 8899999999999999999999999999999766655544443
No 146
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.00 E-value=0.0018 Score=58.31 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.6
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~ 215 (527)
+..|+.|+||||++..++..++..|.+|++++.+....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 34599999999999999999999999999999986543
No 147
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.99 E-value=0.00014 Score=70.72 Aligned_cols=37 Identities=30% Similarity=0.269 Sum_probs=28.0
Q ss_pred CcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 181 ~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
|-.|+||||.+.++..++...|++|.+|-+||....+
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~ 39 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENL 39 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccc
Confidence 5689999999999999999999999999999976543
No 148
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.98 E-value=0.0025 Score=66.92 Aligned_cols=197 Identities=17% Similarity=0.211 Sum_probs=103.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccccc----CCCCCcee-----------e
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTII-----------P 239 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~----~~~~~~i~-----------~ 239 (527)
.|.|.+.--.+|||++++.|...++++|++|.=+- .|.-++..+.-.+...... ......+. |
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK--~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP 80 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFK--SQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKP 80 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCc--hhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEee
Confidence 46666677778899999999999999999986442 3333333332222110000 00011111 1
Q ss_pred eccCCceEEccCCCCCcccc---cC--CccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh--------hhhhcCCC
Q 009721 240 TEYLGVKLVSFGFSGQGRAI---MR--GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT--------LCQVVPLT 306 (527)
Q Consensus 240 ~~~~gl~vl~~~~~~~~~~~---~~--~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~--------~~~~~a~d 306 (527)
....+..++-.+........ +. -......+.+.++.+. ..||+|++-...+.....+. ++... -.
T Consensus 81 ~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~-da 158 (486)
T COG1492 81 CSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIA-DA 158 (486)
T ss_pred cCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhc-CC
Confidence 12224444443322111100 00 0112234455555444 79999999988765443221 11111 12
Q ss_pred eEEEEeCCCcc-hHHHHHHHHHHHHc-CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchh
Q 009721 307 AAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (527)
Q Consensus 307 ~viiV~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (527)
-+++|..=+.- .+..+.-.+.++.. .+..+.|+|+|+. ..+.. +-...++.+++..|.++++.+|+...
T Consensus 159 pvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkF--RGd~~----ll~~gik~Le~~tg~~vlGv~P~~~~ 229 (486)
T COG1492 159 PVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKF--RGDES----LLDPGLKWLEELTGVPVLGVLPYLKD 229 (486)
T ss_pred CEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeee--CCCHH----HHhhHHHHHHHhhCCeeEeecccccc
Confidence 34555554441 12222233333332 2345789999984 33221 22356889999999999999998763
No 149
>PRK04296 thymidine kinase; Provisional
Probab=96.94 E-value=0.0073 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=30.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
++++. ..|--|+||||.+..++..++.+|++|+++
T Consensus 2 g~i~l-itG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEF-IYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEE-EECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34444 448889999999999999999999999999
No 150
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.86 E-value=0.0083 Score=57.14 Aligned_cols=70 Identities=11% Similarity=0.130 Sum_probs=43.9
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++..+.|+|||+...........+..+|.+++|+.....-.....+...++...+.+.+-+|+|+++..
T Consensus 74 ~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 74 TPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred cCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 4667899999986322111122234567999999887654444444555666666766566788997753
No 151
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.86 E-value=0.0097 Score=55.61 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=50.4
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+..+.+.+||||+...........+..+|.+++|+.+...-.......+..+...+++ +-+++|+++.
T Consensus 67 ~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp ESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred ccccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 3788999999987433222233345678999999998766666778888999999999 7788899764
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.85 E-value=0.006 Score=56.35 Aligned_cols=68 Identities=15% Similarity=0.057 Sum_probs=42.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..++++++|+|+...........+..+|.+++|+.............+..+...+.+ +-+|+|+++..
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~ 127 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRV 127 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCc
Confidence 467899999986332222222224467889988887654444445556666665665 56778997643
No 153
>PRK12740 elongation factor G; Reviewed
Probab=96.84 E-value=0.0072 Score=68.07 Aligned_cols=94 Identities=21% Similarity=0.153 Sum_probs=62.5
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|++|++.+||||+...........+..+|.+++|+.+...........+..+...+.+.+ +|+|+++..... .
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~~~~------~ 129 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRAGAD------F 129 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578999999998754322222333557899999998877555555666777777788755 588997643211 1
Q ss_pred CchHHHHHHHhCCCe-EEeccC
Q 009721 358 RGSGSQVVQQFGIPH-LFDLPI 378 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~ 378 (527)
....+++.+.++.+. ...+|.
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~p~ 151 (668)
T PRK12740 130 FRVLAQLQEKLGAPVVPLQLPI 151 (668)
T ss_pred HHHHHHHHHHHCCCceeEEecc
Confidence 246778888888654 345665
No 154
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.83 E-value=0.0017 Score=58.64 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=36.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
.+|-++ |..|+||||+|..|...|..+|++|.++|.|.-...+
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 456666 9999999999999999999999999999999766443
No 155
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=96.81 E-value=0.011 Score=60.66 Aligned_cols=190 Identities=17% Similarity=0.227 Sum_probs=96.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceE---E
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKL---V 248 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~v---l 248 (527)
||+.+.+++.-.|||||+++.+|+..|.++|.+|.++-.=. + ..|.+.. ...+.........+.. +
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~--~----~~~~~~~-----~~~e~~~~~~~~~l~~~~~~ 69 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG--T----RTGKDAD-----DLTEEDIRATSSSLTYAEPL 69 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccc--c----ccCCccc-----hhHHHHHHHhhhhcccCccc
Confidence 78899999999999999999999999999999999985332 0 0111100 0000000000000000 0
Q ss_pred ccCCCCCcccccCCccHHHHHHHHHH---hcccCCCCEEEEeCC-CC-----CChhhhhhhhhcCCCeEEEEeCCCcchH
Q 009721 249 SFGFSGQGRAIMRGPMVSGVINQLLT---TTEWGELDYLVIDMP-PG-----TGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~~yD~IIID~p-p~-----~~~~~~~~~~~~a~d~viiV~~p~~~s~ 319 (527)
+... ............++++.++ ++. ...|++++..- |. ..+....++.... ..++++..+...+.
T Consensus 70 ~~~~---ae~L~~~~~~d~l~e~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~ 144 (354)
T COG0857 70 VLSF---AEVLLSTGQDDVLLEEILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTP 144 (354)
T ss_pred chhh---HHHHhccccchHHHHHHHHHHHHHh-ccCceEEeccceeccccCccccccHHHHhhcC-cchhhccccccCCh
Confidence 0000 0001111111122233322 222 34555555431 11 1111122222222 33455666665555
Q ss_pred HHHHH----HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhH
Q 009721 320 IDVAK----GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTL 382 (527)
Q Consensus 320 ~~~~~----~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i 382 (527)
..... ....+...+..+.|||+|.+...... .....+.++.+..+...++.+|..+-+
T Consensus 145 ~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~l~~~~ll 206 (354)
T COG0857 145 YELKSRVELALAAFGAAGNNLAGVVINNAPVDEAG-----RTEDLLAEFLESSGIAVVGVLPPNRLL 206 (354)
T ss_pred hhhhhHHHHHHHHhcccCCceEEEEecCCChhhhh-----hhhhHHHHHhhhccccccccCCHHHHh
Confidence 44433 33344444557899999965544332 223567778888888888888876643
No 156
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.80 E-value=0.0062 Score=55.24 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=29.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.|-|+.+. |.||||.|..+|...+.+|+||+++=+
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQF 38 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQF 38 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 34555454 999999999999999999999999644
No 157
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0023 Score=59.17 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=35.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+++|.|. |-.|+||||++.+||..|...|.+|.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 3577777 8899999999999999999889999999999654
No 158
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.77 E-value=0.017 Score=51.64 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~--------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..++++++|||+-..... ........+|.+++++..............+.+...+.+ ..+|+|+++.
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 357899999976322110 111124456888888777655333344555666665666 4588899754
No 159
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.71 E-value=0.0023 Score=61.32 Aligned_cols=38 Identities=32% Similarity=0.464 Sum_probs=33.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+....|.+|+||||++.++|..++.+|.+|++||++..
T Consensus 21 i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 21 VTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 44455899999999999999999999999999998754
No 160
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.70 E-value=0.0052 Score=69.61 Aligned_cols=68 Identities=15% Similarity=-0.001 Sum_probs=47.1
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
|++|++.|+|||+...........+..+|.+++|+.....-.......++.+.+.+.+.+ +++|+++.
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 578999999999754322223344667899999987655333445566666666778876 89999764
No 161
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.67 E-value=0.0033 Score=63.66 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++.|+ |..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 455555 78999999999999999999999999999874
No 162
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.66 E-value=0.026 Score=61.38 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=61.2
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.++|||+...........+..+|.+++|+.....-.....+.++..+..++|+ -+++|+++..... .
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~~~a~------~ 148 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDRDGRE------P 148 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcccccC------H
Confidence 46788999999875332222233356789999998876543445667777787788885 4677997533211 1
Q ss_pred CchHHHHHHHhCCCeE-EeccC
Q 009721 358 RGSGSQVVQQFGIPHL-FDLPI 378 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~ 378 (527)
.+.++++.+.++.+.+ ..+|.
T Consensus 149 ~~~l~~i~~~l~~~~~p~~~Pi 170 (526)
T PRK00741 149 LELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHhCCCCeeEEecc
Confidence 1456888888887644 34554
No 163
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.66 E-value=0.0037 Score=56.89 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|++|+|++. .|+||||++..|...|..+|++|..|..|..+
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 568888855 59999999999999999999999999887654
No 164
>PRK00089 era GTPase Era; Reviewed
Probab=96.62 E-value=0.038 Score=55.47 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~--------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++.++++|||+-.... ......+..+|.+++++.....-.......++.+...+.++ -+|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pv-ilVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPV-ILVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCE-EEEEECCcCC
Confidence 45789999998733211 11112245678888888776622233445556666556664 4778997643
No 165
>PRK07667 uridine kinase; Provisional
Probab=96.62 E-value=0.0039 Score=58.75 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+|++. |-.|+||||+|..|+..|.+.|.+|.++++|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 466666 999999999999999999999999999999974
No 166
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.60 E-value=0.0091 Score=54.98 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=35.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
++.+|+|+ |.-|+||||+...|...|..+|+||..|-.+..+
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~ 46 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 45677777 7889999999999999999999999999876543
No 167
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.58 E-value=0.031 Score=53.95 Aligned_cols=67 Identities=15% Similarity=0.090 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhh--cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~--~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+-+.+||||+...........+ ..+|.+++|+..+..-.......+..+...++++ -+|+|+++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 678899999987432211122222 2468888888876554556677888888889984 578899764
No 168
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.54 E-value=0.0073 Score=57.89 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=26.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.+.|+ |+.|+||||+|.+|+ .+++++|.|-
T Consensus 12 ~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDM 43 (220)
T ss_pred CcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEeccc
Confidence 3456666 999999999988773 4789999996
No 169
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.53 E-value=0.0033 Score=61.33 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=32.3
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH------------CCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~------------~G~rVllID~D~~~ 214 (527)
++++.+-||+||||++.++|..+|. .+.+|++++++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 5667799999999999999999873 45689999987543
No 170
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.51 E-value=0.014 Score=53.65 Aligned_cols=35 Identities=31% Similarity=0.504 Sum_probs=29.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|-++.+ .|.||||.|..+|...+.+|+||+++=+-
T Consensus 8 i~v~~g-~GkGKtt~a~g~a~ra~~~g~~v~ivQFl 42 (173)
T TIGR00708 8 IIVHTG-NGKGKTTAAFGMALRALGHGKKVGVIQFI 42 (173)
T ss_pred EEEECC-CCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 444434 89999999999999999999999998554
No 171
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.50 E-value=0.024 Score=61.74 Aligned_cols=87 Identities=14% Similarity=0.042 Sum_probs=56.5
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.|+|||+...........+..+|.+++|+.....-.......++.++..+.+ +-+++|+++..... .
T Consensus 77 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~------~ 149 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD------P 149 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCC------H
Confidence 4678899999987532222222335578999999887664344556777777777777 45677997643211 1
Q ss_pred CchHHHHHHHhCCC
Q 009721 358 RGSGSQVVQQFGIP 371 (527)
Q Consensus 358 ~~~~~~~~~~~g~~ 371 (527)
.+..+++.+.++..
T Consensus 150 ~~ll~~i~~~l~~~ 163 (527)
T TIGR00503 150 LELLDEVENELKIN 163 (527)
T ss_pred HHHHHHHHHHhCCC
Confidence 13567788888754
No 172
>PRK12739 elongation factor G; Reviewed
Probab=96.48 E-value=0.031 Score=63.10 Aligned_cols=96 Identities=22% Similarity=0.088 Sum_probs=62.2
Q ss_pred ccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 277 ~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.|+++.+++||||+...........+..+|.+++|+.....-.......+..+...+.+.+ +++|+++.....
T Consensus 69 ~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~------ 141 (691)
T PRK12739 69 FWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRIGAD------ 141 (691)
T ss_pred EECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC------
Confidence 3578899999998743222222333556799999988765434455677888888888876 888997654321
Q ss_pred CCchHHHHHHHhCCCe-EEeccCc
Q 009721 357 GRGSGSQVVQQFGIPH-LFDLPIR 379 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~-l~~IP~~ 379 (527)
-....+++.+.++... ...+|..
T Consensus 142 ~~~~~~~i~~~l~~~~~~~~iPis 165 (691)
T PRK12739 142 FFRSVEQIKDRLGANAVPIQLPIG 165 (691)
T ss_pred HHHHHHHHHHHhCCCceeEEeccc
Confidence 1145677888877532 3445643
No 173
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.47 E-value=0.0051 Score=59.32 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.++.++ |.+|+|||+++.++|...++.|.+|++||++
T Consensus 24 ~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555 8999999999999999999999999999999
No 174
>PRK00007 elongation factor G; Reviewed
Probab=96.46 E-value=0.032 Score=63.07 Aligned_cols=95 Identities=21% Similarity=0.120 Sum_probs=63.4
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.+||||+......-....+..+|.+++|+.....-.......+.++.+.+.+.+ +++|+++..... .
T Consensus 72 ~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~------~ 144 (693)
T PRK00007 72 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGAD------F 144 (693)
T ss_pred ECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578899999998743222222333556799999988765545556778888888899976 888997644321 1
Q ss_pred CchHHHHHHHhCCCe-EEeccCc
Q 009721 358 RGSGSQVVQQFGIPH-LFDLPIR 379 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~~ 379 (527)
....+++.+.++... ...+|..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (693)
T PRK00007 145 YRVVEQIKDRLGANPVPIQLPIG 167 (693)
T ss_pred HHHHHHHHHHhCCCeeeEEecCc
Confidence 146778888887643 3446653
No 175
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0036 Score=64.17 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=32.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+...+|-+|+||||+-.++|..||+++ +||+|....
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 455669999999999999999999998 999998765
No 176
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.39 E-value=0.0063 Score=61.70 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++-|+ |-.|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 455555 78999999999999999999999999999864
No 177
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.0054 Score=57.96 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=36.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
..+.+|+++ |..|+||||++..|+..|...|..++++|.|...
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345677777 8889999999999999999889999999998754
No 178
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=96.36 E-value=0.017 Score=58.71 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=35.7
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.||+|.|- .||+|||+++..||..|.++|+||.+|.=.-.+
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 48999766 699999999999999999999999999766533
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.36 E-value=0.0072 Score=52.22 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=32.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+.+. |..|+||||++..+|..+...++.++.++++...
T Consensus 4 ~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 4 VILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred EEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 56666 7799999999999999998877789999888654
No 180
>PRK05973 replicative DNA helicase; Provisional
Probab=96.35 E-value=0.0052 Score=59.58 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+.+.+|.+|+||||++.++|...+++|++|++++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 355566999999999999999999999999999999864
No 181
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.35 E-value=0.14 Score=58.57 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 009721 279 GELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (527)
..+|++||.+.+|+-.. ...+..... --+++|+....-++..+.-.++.++..|+++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 36899999999886321 111111111 24788888888899999999999999999999999996
No 182
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.32 E-value=0.042 Score=49.67 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=42.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+++.++|||+..............+|.+++|+.++..........+..+...+.+ +-+|+|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceec
Confidence 478999999986432222222224467889999887654334444455666667777 4677799764
No 183
>PRK00049 elongation factor Tu; Reviewed
Probab=96.31 E-value=0.03 Score=58.89 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=47.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+++||||+...........+..+|.+++|+.....-.......+.++...+.+.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 56679999998742221222233456899999988766444556677888888898877778899764
No 184
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.005 Score=60.12 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.9
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.+..|++|+|||+++.++|..|.+.|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4556999999999999999999999999999965
No 185
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.25 E-value=0.0059 Score=56.73 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=33.3
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+..|.+|+|||+++.+++...++.|.+|+++.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3456999999999999999999999999999999864
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.24 E-value=0.047 Score=58.16 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=39.9
Q ss_pred CCCCEEEEeCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---~-----~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|||+-... . ......+..+|.+++|+.....-...-....+.++..+.++ -+|+|+++.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pi-ilv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV-ILVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcE-EEEEECccC
Confidence 4578899999764320 0 01122245678899888875532222234556666777775 477899763
No 187
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.23 E-value=0.05 Score=48.36 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~--------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+...... ........+|.+++|+.+............+.++..+.+ +-+|+|+++.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 457899999997543211 111123457888888876543222223455666666766 4577799653
No 188
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.017 Score=56.53 Aligned_cols=92 Identities=14% Similarity=0.253 Sum_probs=59.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
.+--|--+|||+-....--.+.....+|++|+|+....-.+-..+.-+-+.++.|++.+-+++|+++.-...+.. ..-.
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ell-elVe 151 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELL-ELVE 151 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHH-HHHH
Confidence 445688899987544332223334467999999888777776777777777889999999999998765422110 1111
Q ss_pred chHHHHHHHhCCC
Q 009721 359 GSGSQVVQQFGIP 371 (527)
Q Consensus 359 ~~~~~~~~~~g~~ 371 (527)
.-..++.+.|+.+
T Consensus 152 mEvreLLs~y~f~ 164 (394)
T COG0050 152 MEVRELLSEYGFP 164 (394)
T ss_pred HHHHHHHHHcCCC
Confidence 1234556666654
No 189
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.18 E-value=0.0059 Score=56.94 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=38.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
||+.-.++-|-.|+||||.+.++-...-..|+++-+|-+||..-.
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~ 45 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEH 45 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHh
Confidence 455555666889999999999999999999999999999996533
No 190
>PRK06696 uridine kinase; Validated
Probab=96.16 E-value=0.0088 Score=57.66 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=34.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+|+|. |..|+||||+|..|+..|...|.+|+.+.+|-+.
T Consensus 23 ~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 356655 8999999999999999999889999998888654
No 191
>PF13479 AAA_24: AAA domain
Probab=96.15 E-value=0.019 Score=54.88 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++++ |..|+||||++..+ -++++||+|..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g 34 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG 34 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence 45555 99999999998877 69999999964
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.14 E-value=0.011 Score=56.78 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCC------CcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G------~rVllID~D~ 212 (527)
.++.++ |-.|+|||+++.++|...+..| .+|+.||.+-
T Consensus 20 ~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 466666 8999999999999999988777 8999999974
No 193
>PRK10218 GTP-binding protein; Provisional
Probab=96.14 E-value=0.087 Score=58.28 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=53.8
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.|+|||+...........+..+|.+++|+.....-.......+..+...+++.+ +++|+++..... .
T Consensus 65 ~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~~a~------~ 137 (607)
T PRK10218 65 WNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRPGAR------P 137 (607)
T ss_pred cCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCCCCc------h
Confidence 467889999998743322222233556899999988766444556666777777888874 788997643211 1
Q ss_pred CchHHHHHHHh
Q 009721 358 RGSGSQVVQQF 368 (527)
Q Consensus 358 ~~~~~~~~~~~ 368 (527)
....+++.+.|
T Consensus 138 ~~vl~ei~~l~ 148 (607)
T PRK10218 138 DWVVDQVFDLF 148 (607)
T ss_pred hHHHHHHHHHH
Confidence 13455666655
No 194
>PRK13351 elongation factor G; Reviewed
Probab=96.13 E-value=0.041 Score=62.24 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+.+.+.|+|||+...........+..+|.+++|+.............++.+...+++++ +++|+++..... -
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~------~ 142 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRVGAD------L 142 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCC------H
Confidence 467889999998743322222333556799999988766544455677777777788865 788997643221 1
Q ss_pred CchHHHHHHHhCCCeE-EeccCc
Q 009721 358 RGSGSQVVQQFGIPHL-FDLPIR 379 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~l-~~IP~~ 379 (527)
...++++.+.++.... ..+|..
T Consensus 143 ~~~~~~i~~~l~~~~~~~~~P~~ 165 (687)
T PRK13351 143 FKVLEDIEERFGKRPLPLQLPIG 165 (687)
T ss_pred HHHHHHHHHHHCCCeEEEEeccc
Confidence 2467888888887543 345543
No 195
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.13 E-value=0.031 Score=61.72 Aligned_cols=68 Identities=9% Similarity=-0.030 Sum_probs=48.0
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
|+++.+.|||||+...........+..+|.+++|+.............+..+...+++. -+++|+++.
T Consensus 61 ~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~-IVviNKiD~ 128 (594)
T TIGR01394 61 YNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 128 (594)
T ss_pred ECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 57889999999864322212222345679999998886655566677788888889886 478899774
No 196
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.10 E-value=0.0091 Score=62.01 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=32.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+..|-.|+||||++..+|..+++.|.+|++|+...
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4555599999999999999999999999999999863
No 197
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.06 E-value=0.008 Score=55.88 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|+|. |..|+||||+|..|+..|...|.++.+|..|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 4555 8999999999999999999999999999999655
No 198
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.06 E-value=0.19 Score=56.92 Aligned_cols=95 Identities=20% Similarity=0.119 Sum_probs=60.6
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|+++.+.++|||+-..........+..+|.+++|+.....-.......+..+...+.+.+ +++|+++..... -
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~~~~------~ 144 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKTGAN------F 144 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCCCCC------H
Confidence 578899999998743322222233556799999987655333345567777778888865 788997644311 0
Q ss_pred CchHHHHHHHhCCCe-EEeccCc
Q 009721 358 RGSGSQVVQQFGIPH-LFDLPIR 379 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~-l~~IP~~ 379 (527)
....+++.+.++... ...||..
T Consensus 145 ~~~~~~i~~~l~~~~~~~~ipis 167 (689)
T TIGR00484 145 LRVVNQIKQRLGANAVPIQLPIG 167 (689)
T ss_pred HHHHHHHHHHhCCCceeEEeccc
Confidence 135778888877543 3456653
No 199
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.06 E-value=0.028 Score=56.93 Aligned_cols=39 Identities=38% Similarity=0.552 Sum_probs=35.5
Q ss_pred eEEEEeeCc-CCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~K-GGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.||+|.|-- ||+|||-++..||..|.++|++|.+|.=.-
T Consensus 29 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGY 68 (311)
T TIGR00682 29 PVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGY 68 (311)
T ss_pred CEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 489999987 999999999999999999999999997643
No 200
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.05 E-value=0.014 Score=56.70 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.++ |-.|+||||++.++++..+++|.+|++++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 456665 89999999999999999888999999999974
No 201
>PRK06762 hypothetical protein; Provisional
Probab=96.03 E-value=0.0081 Score=54.88 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=30.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|+++|.+. |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 45666665 999999999999999887 4568888877543
No 202
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=96.03 E-value=0.06 Score=51.81 Aligned_cols=186 Identities=14% Similarity=0.191 Sum_probs=97.2
Q ss_pred cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---ccccCCCCCceeeecc-----------CCc--
Q 009721 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLEMNPEKRTIIPTEY-----------LGV-- 245 (527)
Q Consensus 182 KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~~~~~~~~~i~~~~~-----------~gl-- 245 (527)
--|.||=.+|+.++..|..+|++|..+-+||+-+--+-.+.+... +...+..+..+.--.+ .|+
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 567899999999999999999999999999987654433333211 0000000000000000 000
Q ss_pred -----eEEc----cCCCCCcccccCCccHHHHHHHHHHhcc-cCCCCEEEEeCCCCCChhhh-----hhhhhc---C---
Q 009721 246 -----KLVS----FGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL-----TLCQVV---P--- 304 (527)
Q Consensus 246 -----~vl~----~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~IIID~pp~~~~~~~-----~~~~~~---a--- 304 (527)
.++. +.+.+..... -|.....+++.+..+. ...+|++|+..++..||.-. ++.++. .
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQv--iPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n 167 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQV--IPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGREN 167 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEE--CcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCc
Confidence 0000 0000000000 1222334444433322 36899999999998887421 111110 1
Q ss_pred ---CCeEEEEeC--CCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccC
Q 009721 305 ---LTAAVIVTT--PQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (527)
Q Consensus 305 ---~d~viiV~~--p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (527)
....++|.. ....--.-++..++.++..|+...++|+|.- . ....+..+.++...+.+....|+.
T Consensus 168 ~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse--~-------pL~e~~keKIAlFcnVpve~VI~~ 237 (255)
T cd03113 168 VLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSE--K-------PLPPEIREKIALFCDVPPEAVISA 237 (255)
T ss_pred EEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCC--C-------CCchHHHHHHHHhcCCCHHHeeec
Confidence 111233322 2333344567778889999999999999861 1 222345556666667766555553
No 203
>PHA02542 41 41 helicase; Provisional
Probab=96.03 E-value=0.0082 Score=64.31 Aligned_cols=41 Identities=22% Similarity=0.105 Sum_probs=36.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~ 215 (527)
-+.++++.+|+||||++.|+|...++.|++|++++++....
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ 231 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEE 231 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHH
Confidence 45666699999999999999999999999999999997543
No 204
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.01 E-value=0.033 Score=50.04 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=37.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.+.+.++|||+.-............+|.+++|+..+..-.......+..++..+.+.+-+++|+++.
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADL 116 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccc
Confidence 4568899997632221122222345788888888754222333333444555555346678899764
No 205
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.00 E-value=0.021 Score=59.46 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=37.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
++++|.|+ |..|+||||+...|...|.++|+||.+|--|..+
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 57789998 6789999999999999999999999999987644
No 206
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.00 E-value=0.022 Score=62.86 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+|++|+|+ |.-|+||||+...|...|.++|+||.+|--|..+
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h~ 50 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHHN 50 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCcC
Confidence 47899998 6688999999999999999999999999986543
No 207
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.12 Score=51.58 Aligned_cols=167 Identities=17% Similarity=0.234 Sum_probs=103.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCc--eEEcc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV--KLVSF 250 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl--~vl~~ 250 (527)
.+++.+.+.---+||=|++..|...+-..|+++..+-++..+ . |. ...|+ +-++
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg-i---l~-------------------~~~gvvvdav~- 203 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG-I---LI-------------------ADDGVVVDAVV- 203 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCcee-e---EE-------------------ecCceEecchh-
Confidence 568999989999999999999999999999999999887543 1 10 00111 1111
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh----hhhhhhcCCCeEEEEeCCCcchHH------
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ----LTLCQVVPLTAAVIVTTPQKLAFI------ 320 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~----~~~~~~~a~d~viiV~~p~~~s~~------ 320 (527)
.......+..+.-.+...++|||+|-.-.++.... +.+..-.+-|.++++-.|......
T Consensus 204 -----------~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~i 272 (339)
T COG3367 204 -----------MDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPI 272 (339)
T ss_pred -----------HHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcC
Confidence 11223444554444433489999999877665432 333334456899999888765443
Q ss_pred -HHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 321 -DVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 321 -~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
.+...+.....+ +.+++|+.+|--..+.. .-++..+.+..+||.|..-.+.+..
T Consensus 273 p~leevi~l~e~l~~a~Vvgi~lNtr~~dE~------~are~~a~l~~efglP~~Dp~~~~~ 328 (339)
T COG3367 273 PPLEEVIALYELLSNAKVVGIALNTRNLDEE------EARELCAKLEAEFGLPVTDPLRFGE 328 (339)
T ss_pred CCHHHHHHHHHHccCCcEEEEEecccccChH------HHHHHHHHHhhccCCccccccccch
Confidence 223333333333 37789999996433321 1234567777788866555554433
No 208
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.98 E-value=0.095 Score=49.08 Aligned_cols=67 Identities=9% Similarity=-0.029 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|||+...........+..+|.+++|+.............+..+...+.+. -+|+|+++.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5678899999864322222222245678889888876543344444455555567774 577899775
No 209
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.95 E-value=0.035 Score=51.78 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=30.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|.|+ +-.|.||||.|..+|...+.+|+||+++=+=
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45555 5678999999999999999999999999664
No 210
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.92 E-value=0.0098 Score=55.63 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=30.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH----------CCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~----------~G~rVllID~D~~~ 214 (527)
+.++.+.+|+||||++.++|..++. .+.+|++|+++...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 5566699999999999999999996 57899999999753
No 211
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.88 E-value=0.012 Score=56.98 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~~ 213 (527)
.++.+. |-.|+||||++.++|...... +.+|++||++..
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 456555 999999999999999875543 479999999863
No 212
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.88 E-value=0.015 Score=62.86 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=35.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+.+.+|-.|+||||++.++++..+++|.+|+++-++..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 456666999999999999999999999999999999864
No 213
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.84 E-value=0.16 Score=46.08 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=26.4
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.+|--|+||||+...+.... .|+++.++-.|.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~ 36 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF 36 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence 3455889999999999887653 488988877664
No 214
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.84 E-value=0.3 Score=44.72 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=48.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+-|+|+|+......+....+..+|.+++|...+ ..++..+...+..+... ....+.+|.|+++..... .
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~----~ 137 (180)
T cd04127 62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR----Q 137 (180)
T ss_pred EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC----c
Confidence 466889999864221112222244578888887764 45666776666655542 122356888997643211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 138 v~~~~~~~~~~~~~~ 152 (180)
T cd04127 138 VSEEQAKALADKYGI 152 (180)
T ss_pred cCHHHHHHHHHHcCC
Confidence 122345566666654
No 215
>PRK09354 recA recombinase A; Provisional
Probab=95.83 E-value=0.019 Score=58.77 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++-|+ |-.|+||||++.+++...++.|.+|++||+.-
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 455555 78999999999999999999999999999974
No 216
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.82 E-value=0.011 Score=53.24 Aligned_cols=37 Identities=32% Similarity=0.290 Sum_probs=32.7
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+..|..|+||||+|..|+..+...|.++.++|.|...
T Consensus 3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 3449999999999999999999989999999988654
No 217
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.82 E-value=0.011 Score=50.78 Aligned_cols=30 Identities=43% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
|.| .|..|+||||+|..||..+ |..++-+|
T Consensus 2 I~I-~G~~gsGKST~a~~La~~~---~~~~i~~d 31 (121)
T PF13207_consen 2 III-SGPPGSGKSTLAKELAERL---GFPVISMD 31 (121)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH---TCEEEEEH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHH---CCeEEEec
Confidence 444 4999999999999999877 66654443
No 218
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.0084 Score=59.50 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=34.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH----CC------CcEEEEEeCCCCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPSL 217 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~----~G------~rVllID~D~~~~s~ 217 (527)
+.+|.-+-||+||||++..|..+|+. .| .+|++|.+....+++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence 45566699999999999999999883 24 479999998877653
No 219
>PLN03127 Elongation factor Tu; Provisional
Probab=95.80 E-value=0.11 Score=55.34 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+++||||+--............+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 56678999998743332222333456899999988765434556777888888899877778899764
No 220
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.77 E-value=0.034 Score=58.69 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=45.4
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++++.+.|||||+.-.........+..+|.+++|+....--.....+.+..+..++.+.+-+++|+++.
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 356789999998732211122233557899999988765433444555666777777766789999764
No 221
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.75 E-value=0.011 Score=58.06 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=32.2
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+..|.+|+||||+|..||..|...|++|.++|.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 455999999999999999999999999999988853
No 222
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.70 E-value=0.082 Score=50.93 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (527)
..|.+.|+|||+...........+..+|.+++|+.............++.+...+++ +-+++|+++
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD 136 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKID 136 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCC
Confidence 467889999997554333334446678999999877654444556666766666777 457889976
No 223
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.69 E-value=0.014 Score=57.84 Aligned_cols=37 Identities=30% Similarity=0.441 Sum_probs=33.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~ 212 (527)
+.+..+..|+||||++.++|..++.. |.+|+++.++.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 55566999999999999999999887 99999999975
No 224
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.69 E-value=0.031 Score=54.37 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=33.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++.|. |-.|+|||+++.++++..+++|.+|++|.++-.
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 345555 999999999999999998899999999999863
No 225
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.69 E-value=0.017 Score=57.16 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.++.|-.|+||||++.++|...+++|.+|++|+++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 35555599999999999999999999999999999984
No 226
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.69 E-value=0.13 Score=53.82 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=40.8
Q ss_pred cCCCCEEEEeCCCCC-Ch---hh-----hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 278 WGELDYLVIDMPPGT-GD---IQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 278 ~~~yD~IIID~pp~~-~~---~~-----~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
|....+.+|||++-. ++ .. .+..++..+|.+++|+....--...=..+.++|...+.|+ -+|+|+++..
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpv-iLvvNK~D~~ 125 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPV-ILVVNKIDNL 125 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEEcccCc
Confidence 467779999997633 11 11 1233355689999888765522222234556666656664 4666997643
No 227
>PF13245 AAA_19: Part of AAA domain
Probab=95.61 E-value=0.022 Score=44.95 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC----CCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~----G~rVllID~D 211 (527)
+.+..+-.|+|||+++++++..+... |.+|+++-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 45556899999999999999999865 8899998544
No 228
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=95.60 E-value=0.029 Score=53.87 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=42.6
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
++.+.+.++|||+...........+..+|.+++|+...... .....+.+......+.+.+-+++|+++..
T Consensus 74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 46788999999863222222222344578999998776521 12334445555666766667788997643
No 229
>PRK15453 phosphoribulokinase; Provisional
Probab=95.60 E-value=0.022 Score=56.32 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=37.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~ 215 (527)
..+|+|+ |-.|+||||++..|+..|.+.|.++.+|+.|-+..
T Consensus 5 ~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3578887 88999999999999999988888999999998774
No 230
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.57 E-value=0.019 Score=56.36 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=35.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~ 215 (527)
+|+|+ |-.|+||||++..|+..|.+.|.+|.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 46776 78899999999999999999999999999998775
No 231
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.56 E-value=0.024 Score=53.92 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
..+|++. |..|+||||++..|+..+ .+.++.+++.|...
T Consensus 6 ~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 6 PIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 3467766 899999999999999988 45789999998754
No 232
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=95.56 E-value=0.027 Score=60.15 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=49.6
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEeccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (527)
++.+.+.|||||+......-....+..+|.+++|+.+..-.+ ..+.+.+.++..++++.+-+++|+++
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 478899999998743332233334557899999988765432 35677788888899998888999976
No 233
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.55 E-value=0.017 Score=55.67 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=31.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~ 213 (527)
++.+. |-.|+|||+++.++++..+++ |.+|++|.++..
T Consensus 21 ~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 21 VVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP 59 (226)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred EEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence 55555 899999999999999999988 999999999863
No 234
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=95.55 E-value=0.11 Score=51.47 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=39.9
Q ss_pred CCCCEEEEeCCCCCCh---hh-----hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---IQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---~~-----~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.++++|||+-... .. .....+..+|.+++|+..+...... ...++.+...+.++ -+|+|+++.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 3456899999763221 00 0112244678888888776543332 45566677777775 478899764
No 235
>PHA00729 NTP-binding motif containing protein
Probab=95.53 E-value=0.018 Score=55.21 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
.|.++ |.+|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 34455 8999999999999999875
No 236
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.52 E-value=0.06 Score=50.34 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCCChhhh-hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~-~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+- ..... .......+|.+++|+.............+......+.++ -+|+|+++.
T Consensus 66 ~~~~~~i~DtpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~-iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKL-IVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4788999999864 22211 112223468888888765422122223333444456664 478899764
No 237
>PLN03126 Elongation factor Tu; Provisional
Probab=95.52 E-value=0.088 Score=56.63 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.+||||+.-....-....+..+|.+++|+.....-.......+..+...+++.+-+++|+++.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 56688999998632222222333456799999987765545556777788888899877888999764
No 238
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.46 E-value=0.024 Score=52.82 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=35.4
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.++.+|.+. |..|+||||++..|+..+...|..++++|.|.-.
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 445566665 8889999999999999998888889999988644
No 239
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.44 E-value=0.02 Score=55.61 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=33.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~ 213 (527)
+.+.++..|+||||++.++|..++.. |.+|+++.++..
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 45555999999999999999999987 999999999863
No 240
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.42 E-value=0.016 Score=59.20 Aligned_cols=39 Identities=31% Similarity=0.235 Sum_probs=34.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~~ 214 (527)
+++..|-.|+||||++..|+.+|. ..|++|.++|.|-.-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 356679999999999999999998 589999999999754
No 241
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.38 E-value=0.13 Score=47.47 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=30.4
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
..+.+...+ | .|=||||-|..+|...+-+|+||++|=+=
T Consensus 20 ~~Gli~VYt-G-dGKGKTTAAlGlalRAaG~G~rV~iiQFl 58 (178)
T PRK07414 20 IEGLVQVFT-S-SQRNFFTSVMAQALRIAGQGTPVLIVQFL 58 (178)
T ss_pred CCCEEEEEe-C-CCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence 334444443 4 56799999999999999999999999664
No 242
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.37 E-value=0.083 Score=54.08 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=36.1
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.||+|.|- -||+|||-++..||..|.++|++|.+|.=.-.+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 58888875 799999999999999999999999999866443
No 243
>CHL00071 tufA elongation factor Tu
Probab=95.35 E-value=0.15 Score=53.96 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+++||||+--.........+..+|.+++|+.+...-.......+..+...+++.+-+++|+++.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 56678999998732211222333456799999988775444556677788888899877788999764
No 244
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=95.34 E-value=0.12 Score=51.73 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=95.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
..++|++.+.---+||-|++..|..+|.++|.++..+-+...+= |. .. .|+ +
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGi----mi------------------a~-~Gv---~-- 162 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGI----MI------------------AG-YGV---P-- 162 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHH----HC------------------HS-EC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceE----EE------------------ec-CCe---e--
Confidence 56899999999999999999999999999999999998775441 10 00 010 0
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh-----hhhhhhhcCCCeEEEEeCCCcch--------
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-----QLTLCQVVPLTAAVIVTTPQKLA-------- 318 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~-----~~~~~~~~a~d~viiV~~p~~~s-------- 318 (527)
............++.+.-.... +.|+|||-.-.++... ++.++.-..-|.+++...|....
T Consensus 163 -----iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 163 -----IDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred -----ccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 0112233445667777766643 5599999988766532 23333344569999998884432
Q ss_pred HHHHHHHHHHHHcCC-C----CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 319 FIDVAKGVRMFSKLK-V----PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 319 ~~~~~~~~~~l~~~~-~----~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+..+.+.+++.+.+. . +++|+-+|-...+... -+...+++.++||.|..-.
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~~e------~~~~~~~~~~e~glPv~Dp 292 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSEEE------AKAAIERIEEELGLPVTDP 292 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS-HHH------HHHHHHHHHHHH-S-EE-H
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCHHH------HHHHHHHHHHHHCCCeeec
Confidence 334556666665542 2 3899999974432111 1246788888999876543
No 245
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=95.34 E-value=0.14 Score=53.82 Aligned_cols=68 Identities=16% Similarity=0.303 Sum_probs=45.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|||+--............+|.+++|+.....-.....+.+..+...+++.+-+++|+++.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678999998643222222223445799999988765434455677777888898877778999764
No 246
>PRK15494 era GTPase Era; Provisional
Probab=95.24 E-value=0.19 Score=51.70 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=38.4
Q ss_pred CCCCEEEEeCCCCCCh---hh--h---hhhhhcCCCeEEEEeCCCcchHHHH-HHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---IQ--L---TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---~~--~---~~~~~~a~d~viiV~~p~~~s~~~~-~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.++++|||+.... .. + ....+..+|.+++|+.... ++... ...++.++..+.+.+ +|+|+++.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 4567899999864221 00 0 0112346788888877543 22222 345666666676665 68899774
No 247
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.21 E-value=0.2 Score=45.84 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+...........+..+|.+++|+..... +.... ..+..+...+.+ +-+|.|+++.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~-iiiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLE-IIPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCC-EEEEEECCCC
Confidence 467788999986433222222234567999999877542 22222 222333345666 4578899764
No 248
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.21 E-value=1 Score=41.71 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+++.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+.+.
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 4678899997743222122222446788888877643 45666666666555432 2346778899663
No 249
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.018 Score=53.74 Aligned_cols=37 Identities=30% Similarity=0.208 Sum_probs=32.3
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+.+|-+|+||||.|-+||..|.+.+.+|.-+..|..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~ 40 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL 40 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence 3455999999999999999999999999998888753
No 250
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=95.18 E-value=0.57 Score=42.18 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
..+.+-|.||++.-.........+..+|.+++|..++. .+...+...+..+++. +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccC
Confidence 45678899998643322222222456788888887754 4556666666666553 455 4588899764
No 251
>PRK12736 elongation factor Tu; Reviewed
Probab=95.18 E-value=0.11 Score=54.63 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=46.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.+||||+..............+|.+++|+....--.......+.++...+++.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 56788999998732222222333446799999988765434455677777888898877788999764
No 252
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.17 E-value=0.03 Score=55.27 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=33.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~ 214 (527)
+.+.++..|+|||+++.|+|..++.. |++|+++.++...
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 56666999999999999999999987 6999999998643
No 253
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.13 E-value=0.037 Score=51.03 Aligned_cols=39 Identities=26% Similarity=0.239 Sum_probs=33.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+|.|. |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 7 ~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 7 GYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 3466666 88999999999999999998888899998764
No 254
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.13 E-value=0.33 Score=42.70 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=43.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (527)
..+++.++|+|+...........+..+|.+++++.++. .++..+...+..+.... .+ +-+|.|+++.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 35788999998754322222333456788888887754 45666777776666543 44 5688899764
No 255
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.13 E-value=0.2 Score=48.38 Aligned_cols=64 Identities=6% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
...++++|||.... .. ......+|.+++++.....-......+++++...+.+.+-+|+|+.+.
T Consensus 82 ~~~i~~vDtPg~~~-~~--l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDIN-AM--IDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchHH-HH--HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 44578999986441 11 222445788888887654433344567778877788865568899764
No 256
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=95.12 E-value=0.073 Score=54.33 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=35.1
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.||+|.|- -||+|||-++..||..|.++|++|.+|.=.-
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 58999886 7999999999999999999999999997643
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.09 E-value=0.029 Score=55.26 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.+-+.++ |+.|||||.+|+.+|..|.+.|.+|+++-+
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3456666 999999999999999999988999999865
No 258
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.07 E-value=0.15 Score=44.68 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCCChh-------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~-------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.++++++|+|+-.... .........+|.+++++.+..............+...+.+. -+|+|+++.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPV-LLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeE-EEEEEcccc
Confidence 6789999998732211 11111234578888888776655444443444555556664 588899653
No 259
>PRK12735 elongation factor Tu; Reviewed
Probab=95.01 E-value=0.16 Score=53.36 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=45.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++..++++|||+--.........+..+|.+++|+.....-.....+.+.++...+++.+-+++|+++.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45678999998742222222233456799999988765434455677777888888877778899765
No 260
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.01 E-value=0.061 Score=58.57 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=33.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~ 213 (527)
.++.+. |-.|+||||++.++++..+++ |.+|++|.++..
T Consensus 32 s~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 32 RPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 456655 899999999999999988877 999999999864
No 261
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=94.99 E-value=0.016 Score=47.27 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.4
Q ss_pred cCeeEEEEcCCCCcccCChHHHHhchh
Q 009721 491 GNYAVSITWPDGFSQIAPYDQLQTMER 517 (527)
Q Consensus 491 g~~al~i~w~Dgh~s~y~~~~L~~~~~ 517 (527)
.+..|.|.|+||+.+.|++.|||.-++
T Consensus 8 ~~~~l~i~w~DG~~~~~~~~~LRd~C~ 34 (89)
T PF06155_consen 8 DERHLEIEWSDGQESRFPYEWLRDNCP 34 (89)
T ss_dssp CTTEEEEEETTSEEEEEEHHHHHHT-S
T ss_pred CCCEEEEEECCCCEEEECHHHHhccCC
Confidence 456899999999999999999998854
No 262
>PRK05439 pantothenate kinase; Provisional
Probab=94.97 E-value=0.048 Score=55.09 Aligned_cols=41 Identities=27% Similarity=0.269 Sum_probs=34.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC--CCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~--G~rVllID~D~~~ 214 (527)
+.+|+|+ |-.|+||||+|..|+..|.+. |.+|.+|..|-+.
T Consensus 86 ~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 4577776 889999999999999999864 7899999999764
No 263
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.97 E-value=0.033 Score=51.71 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=30.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+-+.++ |..|+|||.+|..+|..+.++|++|+.++.+
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 346666 6799999999999999999999999999875
No 264
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.94 E-value=0.37 Score=40.85 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEec
Q 009721 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---------~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (527)
....++|+|||+-... ..........+|.+++|+..+...-.....+++.++ .+. .+-+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~-~~i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKK-PIILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTS-EEEEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCC-CEEEEEcC
Confidence 3456789999874321 001222344678888888876632344556667775 333 45677775
No 265
>PRK08233 hypothetical protein; Provisional
Probab=94.94 E-value=0.023 Score=52.51 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=28.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
++|+|.++ .|+||||+|..||..|. +..++..|.+.+
T Consensus 4 ~iI~I~G~-~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIAAV-SGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred eEEEEECC-CCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 57777754 59999999999998874 347777887754
No 266
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.92 E-value=1.1 Score=40.32 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (527)
.+.+.|.|+|+..............++.+++|...+. .++..+...+..+.... ...+-+|.|+++.
T Consensus 50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 4678899998643222222222446788888877654 56666666666554432 2246788899764
No 267
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.91 E-value=0.033 Score=52.41 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=31.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCc----EEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~r----VllID~D~~ 213 (527)
||+|. |-.|+||||+|..|+..|.+.|.. +.++..|.+
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 46666 889999999999999999988876 777777753
No 268
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.90 E-value=0.046 Score=53.96 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.++++|. |-.|+|||+++.++++..++.|.+|++|.++-..
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 3466665 9999999999999999999999999999999754
No 269
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.88 E-value=0.047 Score=42.07 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.3
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
|++. |-.|+||||++..|+..| .|.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4554 889999999999999999 6788888876
No 270
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=94.87 E-value=0.4 Score=43.18 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (527)
+++.+.++|+|+...........+..++.+++|+..... ++..+...+..+.. .+.+ +-+|+|+++.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEcccc
Confidence 467889999975322222222224567888888776543 34444444433322 2556 5578899764
No 271
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.86 E-value=0.05 Score=52.75 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=33.9
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++.+. |-.|+||||++.++++.+++.|.++++++++..
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 355555 999999999999999999999999999998753
No 272
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.86 E-value=0.11 Score=49.03 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCcee-eeccCCceEEccCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTII-PTEYLGVKLVSFGFSG 254 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~-~~~~~gl~vl~~~~~~ 254 (527)
+...=|--|.|||-++..+++.+-+.|++|.++..-. ....++.. .....-.+. ..-+..+.++|....
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~---T~refi~q------m~sl~ydv~~~~l~G~l~~~~~~~~- 99 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL---TVREFIKQ------MESLSYDVSDFLLSGRLLFFPVNLE- 99 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEech---hHHHHHHH------HHhcCCCchHHHhcceeEEEEeccc-
Confidence 4444488999999999999999999999999998764 11111110 001111111 112345666664322
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeC
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDM 288 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~ 288 (527)
...|........|+.+++..+..++|+||||+
T Consensus 100 --~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDS 131 (235)
T COG2874 100 --PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDS 131 (235)
T ss_pred --ccccChHHHHHHHHHHHhhHHhhcCCEEEEec
Confidence 22344444556777777776667899999999
No 273
>PRK06526 transposase; Provisional
Probab=94.86 E-value=0.019 Score=56.49 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
-+.++ |.+|+|||++|.++|..+.+.|++|+.+.+
T Consensus 100 nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 45555 899999999999999999999999988544
No 274
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.85 E-value=0.038 Score=56.06 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=29.8
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
.|.-..|..|+|||+++.++|...+. .|.+|++||+.-
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 34445599999999999999976542 367999999975
No 275
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=94.84 E-value=0.57 Score=42.89 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.|.+.|+|+|+......+.......++.++++...+ ..++..+......+.. .+.+ +-++.|+++..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhh
Confidence 467899999764322112112233456666665543 3455555555444432 2445 45888997643
No 276
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.84 E-value=0.3 Score=44.05 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+...........+..+|.++++...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 3678999998843222222222345788888877655 4566666666666543 344 4578899764
No 277
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=94.81 E-value=0.94 Score=40.96 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|.|+|+...........+..+|.++++... +..++..+.+.+..+... +.+ +-+|.|+.+.
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl 120 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDM 120 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 35688999987433222222224467888888754 455666666666666543 233 5678898664
No 278
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.77 E-value=0.62 Score=42.33 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|+|+......+....+..++.+++|+..... ++..+...+..+... +.+ +-+|.|+.+.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 467789999987533222222234567888888876553 555565555544332 344 5688899764
No 279
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.77 E-value=0.25 Score=46.70 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=39.8
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+-+.|+|||+...........+..+|.+++|+..... ........+..+...+.+.+-+|+|+++.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6689999987432222223334456899999887642 11223345555555666556689999764
No 280
>COG1159 Era GTPase [General function prediction only]
Probab=94.77 E-value=0.23 Score=49.23 Aligned_cols=111 Identities=19% Similarity=0.171 Sum_probs=70.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~~ 254 (527)
.+++. |++.|||||+.-+| .|.||.++.-=+|-.- . .+. |+.
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTTR-~-----------------~I~-----GI~-------- 49 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTTR-N-----------------RIR-----GIV-------- 49 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchhh-h-----------------hee-----EEE--------
Confidence 57788 99999999995433 5899999977665411 0 000 110
Q ss_pred CcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009721 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (527)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~ 326 (527)
..+++.+|+||||+-...-. .....+..+|.+++++..+..--.+-...+
T Consensus 50 ----------------------t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 50 ----------------------TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred ----------------------EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 01678899999987332211 112224467888888888774444556677
Q ss_pred HHHHcCCCCEEEEEEecccc
Q 009721 327 RMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 327 ~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.++..+.+++ +++|+++.
T Consensus 108 ~~lk~~~~pvi-l~iNKID~ 126 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDK 126 (298)
T ss_pred HHHhhcCCCeE-EEEEcccc
Confidence 77777666654 56699763
No 281
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.76 E-value=0.44 Score=44.78 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC-CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL-KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+......+....+..++.+++|.... ..++..+...+..+... +...+-+|.|+++.
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 346789999764322222222244567788887663 45666666666666543 22234578899764
No 282
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.67 E-value=0.59 Score=41.72 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=38.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+...........+..++.++++... +..++..+...+..+... +.+ +-+|.|+++.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 356789999987433322222224456777766554 334555556555555443 455 5677899764
No 283
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.67 E-value=0.99 Score=41.28 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+......+.-..+..+|.++++... +..++..+....+.+... +.| +-+|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl 119 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDL 119 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhh
Confidence 45678899977533222222224456788777655 445666666555544432 344 5678899764
No 284
>PLN00043 elongation factor 1-alpha; Provisional
Probab=94.66 E-value=0.14 Score=54.76 Aligned_cols=69 Identities=16% Similarity=0.062 Sum_probs=49.5
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++.+-+.|||||+...........+..+|.+++|+......+ ..+++.+.++..++++.+-+++|+++.
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 467889999998743333333344567899999988876433 356677777888899888888999764
No 285
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.66 E-value=0.044 Score=58.21 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=32.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
+.+.++.+|+|||+++.|+|..+| +.|++|++++++.
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm 233 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM 233 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 445669999999999999999998 6799999999886
No 286
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.59 E-value=0.064 Score=51.74 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=33.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
..+.+. +..|+||||++.+++...++.|.+|++++++.
T Consensus 21 ~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 21 FFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred eEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 456655 89999999999999998888899999999864
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=94.58 E-value=0.13 Score=59.31 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
.+|-+.+||||+......-....+..+|.+++|+.+..--......+++.+...+.+.+ +++|+++..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35678999998755433333444567899999998776555566788888888888764 667997643
No 288
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.57 E-value=0.52 Score=43.89 Aligned_cols=66 Identities=11% Similarity=0.080 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+.+.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 3568899998743222222222345688888876543 4566666666666554 334 5677899764
No 289
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=94.56 E-value=0.083 Score=46.82 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=42.4
Q ss_pred ccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCC
Q 009721 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 222 (527)
Q Consensus 169 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg 222 (527)
++..+.+|-++ |-.|+||||+|..|..+|-++|+-.-.+|.|--+..+..-+|
T Consensus 27 ~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~ 79 (207)
T KOG0635|consen 27 LKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLG 79 (207)
T ss_pred hcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccC
Confidence 44456688888 888999999999999999999999999999976554443333
No 290
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.45 E-value=0.76 Score=41.03 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.++|+|+.-.........+..+|.++++..+.. .+...+.+.+..+... +.+ +-+|.|+++.
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~ 117 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDL 117 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 3567899998743222222222456788888887755 4566666665555443 344 5677899764
No 291
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.45 E-value=0.053 Score=52.15 Aligned_cols=39 Identities=28% Similarity=0.283 Sum_probs=32.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH--CCCcEEEEEeCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~--~G~rVllID~D~~~ 214 (527)
+|++. |-.|+||||++..|+..|.. .+.+|.+|..|-+.
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 35666 88999999999999999976 56789999998654
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.40 E-value=0.21 Score=47.46 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=32.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++|+|+ |--|+||||+..+++..+. .+++|.++..|..
T Consensus 22 ~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 22 LVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 4577777 7788999999999988775 4579999998864
No 293
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.38 E-value=0.15 Score=57.01 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++++.++|||||+--.........+..+|.+++|+.............+.++..++.+.+-+++|+++.
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 467789999998732111112223456788999887754433334455556666777767788999764
No 294
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.21 Score=51.83 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCCEEEEeCCCCC--ChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 279 GELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 279 ~~yD~IIID~pp~~--~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.++-+=|+|||+-- ++.++ ..+.++|.+++|+....---..+.++.+.++..++|++.+| |+.+...+.. +
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTY--RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFi-NKlDR~~rdP----~ 151 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTY--RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFI-NKLDREGRDP----L 151 (528)
T ss_pred CCeEEeccCCCCccccchhHH--HHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEe-eccccccCCh----H
Confidence 45556789998843 33333 23668899999998877666677888888888899987766 9865444331 1
Q ss_pred CCchHHHHHHHhCCC
Q 009721 357 GRGSGSQVVQQFGIP 371 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~ 371 (527)
+.+.++++.+++.
T Consensus 152 --ELLdEiE~~L~i~ 164 (528)
T COG4108 152 --ELLDEIEEELGIQ 164 (528)
T ss_pred --HHHHHHHHHhCcc
Confidence 6789999999864
No 295
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.38 E-value=0.29 Score=51.96 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~--------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
++..+.|+|||+-.... ......+..+|.+++|+.....-........+.+++.+.++ -+|+|+++..
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~~ 120 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDGK 120 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccCC
Confidence 45568999997632110 11122244678888888875532233345566777777774 4677997643
No 296
>PRK05595 replicative DNA helicase; Provisional
Probab=94.35 E-value=0.056 Score=57.79 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=33.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
-+.+.++..|+|||+++.|+|..+| ++|++|+++.+.-
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 3556669999999999999999887 6799999999975
No 297
>COG4240 Predicted kinase [General function prediction only]
Probab=94.34 E-value=0.057 Score=51.20 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=34.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCC-CcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G-~rVllID~D~ 212 (527)
..|..+||-.|+||||+|+.+-..|+++| +||+-+.+|-
T Consensus 50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 35666779999999999999999999988 7999999984
No 298
>PRK09183 transposase/IS protein; Provisional
Probab=94.33 E-value=0.061 Score=53.14 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=30.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
..+.++ |..|+|||+++..+|..+...|++|+.+++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 345565 889999999999999998899999998863
No 299
>PRK06217 hypothetical protein; Validated
Probab=94.32 E-value=0.055 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.|.|+ |-.|+||||+|..||..| |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 446666 889999999999999766 443 678874
No 300
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=94.27 E-value=0.15 Score=51.38 Aligned_cols=41 Identities=34% Similarity=0.553 Sum_probs=36.7
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.||+|.|. -||.|||-++..||..|.++|.++.++.=...+
T Consensus 48 PVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 48 PVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 48888876 799999999999999999999999999877644
No 301
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.26 E-value=0.086 Score=50.69 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.+. +..|+|||+++.+++...+++|.+|++++++-
T Consensus 17 ~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 17 HVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456665 77999999999999999888999999999986
No 302
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.26 E-value=0.053 Score=53.82 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=27.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+.+|-+|+||||+|..|+..|...|++|.+|+.|.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3445599999999999999999999999999999654
No 303
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.15 E-value=0.074 Score=49.62 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+|+|. |--|+||||++..|+..|...|++|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666 889999999999999999999999977654
No 304
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.14 E-value=0.065 Score=50.44 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|++. |-.|+||||++..|+..+ .+.++.++..|...
T Consensus 2 igi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 5555 779999999999999988 56789999999654
No 305
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.12 E-value=0.084 Score=49.41 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=31.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
++.|+|. |--|+||||++..||..|...|++|..+-.
T Consensus 3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3567766 889999999999999999999999977643
No 306
>PRK00093 GTP-binding protein Der; Reviewed
Probab=94.12 E-value=1 Score=47.93 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=41.2
Q ss_pred CCCCEEEEeCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---------~--~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++.++.++|||+.... . ..+...+..+|.+++|+.........-.+.+..+...+.++ -+++|+++.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~-ivv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRAL-VIVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcE-EEEEECccC
Confidence 4567899999873210 0 01122344678999998876543344445666666667764 478899764
No 307
>PRK12377 putative replication protein; Provisional
Probab=94.10 E-value=0.072 Score=52.18 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
-+.|+ |..|+|||+++..+|..|.+.|++|+++...
T Consensus 103 ~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 45555 8899999999999999999999999998774
No 308
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.07 E-value=0.45 Score=54.17 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=44.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|||+......+.......+|.+++|+..+..........+..+...+++ +-+++|+++.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccc
Confidence 456789999987433222222234457889999877654445555667777778888 5578899764
No 309
>PRK08506 replicative DNA helicase; Provisional
Probab=94.07 E-value=0.07 Score=57.41 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=34.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
-+.++++..|+|||+++.|+|..+++.|++|+++.+...
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs 231 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMP 231 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCC
Confidence 355566999999999999999999999999999999864
No 310
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.05 E-value=1.3 Score=39.61 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+-|+|+|+.-....+....+..++.++++...+. .++..+......+.. .+.+ +-+|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4567789997643322222222445688877776543 455555554444432 2445 45788997643
No 311
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.13 Score=51.14 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++++=|+ |-.|+||||+|.+++....+.|.+|..||+--
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4566677 88999999999999999999999999999874
No 312
>PRK03003 GTP-binding protein Der; Reviewed
Probab=93.95 E-value=0.44 Score=51.37 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=39.9
Q ss_pred CCCCEEEEeCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~--------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++..+.|+|||+-.... ......+..+|.+++|+.........-..+.+.++..+.++ -+|.|+++.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pi-ilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPV-ILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccC
Confidence 45668899997732110 01112244679999998876532222345566666667774 477799764
No 313
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=93.94 E-value=0.76 Score=41.08 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCCC--CEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLKV--PCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~~~--~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+...........+..+|.++++..++ ..++..+...+..+..... ..+-++.|+.+.
T Consensus 49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 456789999764322222222234578888887764 4456666666666655431 135578898653
No 314
>PRK05433 GTP-binding protein LepA; Provisional
Probab=93.93 E-value=0.39 Score=53.26 Aligned_cols=85 Identities=14% Similarity=0.054 Sum_probs=48.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
..|.+.|+|||+...........+..+|.+++|+......-......+..+...+++ +-+|+|+++..... ..
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~------~~ 144 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD------PE 144 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc------HH
Confidence 467899999987433222222335578999999887543222233334444456777 45788997643211 01
Q ss_pred chHHHHHHHhCC
Q 009721 359 GSGSQVVQQFGI 370 (527)
Q Consensus 359 ~~~~~~~~~~g~ 370 (527)
...+++.+.++.
T Consensus 145 ~v~~ei~~~lg~ 156 (600)
T PRK05433 145 RVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHhCC
Confidence 234566666654
No 315
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.90 E-value=0.7 Score=41.89 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=39.2
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
..+.|+|+|+.-....+.......+|.++++.... ..++..+...+..++.. +.+ +-+|.|+.+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDL 121 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 46789999774322222222234578888887764 45666776666666543 333 5677898664
No 316
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.90 E-value=1.1 Score=40.24 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+-|+|+|+..............+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 3567889997643222222222345788888876643 4666666666655543 234 5678899663
No 317
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=93.87 E-value=0.8 Score=41.04 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+-.....+....+..+|.+++|...+. .++..+...++.+... +.+ .-+|.|+++.
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 119 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDL 119 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 34678999997532111111222445788888877654 3455566666665544 343 5677899764
No 318
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.87 E-value=0.085 Score=50.57 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=32.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.|.++ |+.|+|||+++..++..+.+.|.+++.+|++..
T Consensus 40 ~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 40 FLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 46666 899999999999999998888899999998743
No 319
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=93.87 E-value=0.29 Score=54.81 Aligned_cols=96 Identities=20% Similarity=0.141 Sum_probs=67.2
Q ss_pred cC-CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 278 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 278 ~~-~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
|+ +|.+-|||||+......-...++..+|.+++|+....--...+...++++.+.++|.+- ++|+++..... +
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~-fiNKmDR~~a~--~--- 145 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRIL-FVNKMDRLGAD--F--- 145 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEE-EEECccccccC--h---
Confidence 56 48999999999765443333446678999999998877777788999999999999764 55996533211 1
Q ss_pred CCchHHHHHHHhCCCe-EEeccCch
Q 009721 357 GRGSGSQVVQQFGIPH-LFDLPIRP 380 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~-l~~IP~~~ 380 (527)
....+++.+.++.+. ...+|...
T Consensus 146 -~~~~~~l~~~l~~~~~~v~~pIg~ 169 (697)
T COG0480 146 -YLVVEQLKERLGANPVPVQLPIGA 169 (697)
T ss_pred -hhhHHHHHHHhCCCceeeeccccC
Confidence 146778888887543 34455543
No 320
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=93.85 E-value=0.77 Score=43.72 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=47.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-----CCEEEEEEecccccCCCccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~-----~~~~gvV~N~~~~~~~~~~~ 353 (527)
.+.+.|.|+++.-....+...-+..+|.+++|...+. .++..+...+..+.+.. ...+-+|.|+.+.....
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~--- 125 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNR--- 125 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccc---
Confidence 4568899997632111111122446788888877554 46676766666665432 22466888997643211
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
....+..+.+.+.++.
T Consensus 126 -~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 126 -TVKDDKHARFAQANGM 141 (215)
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1122344556666553
No 321
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.85 E-value=0.87 Score=40.57 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (527)
.+++.|+|+|+...........+..+|.+++|..+... ++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 56799999987543222222223467888888887665 45555444433322 2344 5567899764
No 322
>PRK08760 replicative DNA helicase; Provisional
Probab=93.85 E-value=0.073 Score=57.30 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~ 214 (527)
-+.+.++.+|+||||++.|+|...|. .|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 35555699999999999999999985 59999999988643
No 323
>PRK06749 replicative DNA helicase; Provisional
Probab=93.84 E-value=0.079 Score=56.25 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=34.3
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.|.++.+|+|||+++.|+|...|+.|++|+++.+.-..
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 455569999999999999999999999999999988643
No 324
>PTZ00035 Rad51 protein; Provisional
Probab=93.83 E-value=0.089 Score=54.00 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=30.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
+.++.++ |..|+||||++..++..... .+.+|++||...
T Consensus 118 G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 118 GSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 3455555 89999999999999877542 467999999864
No 325
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.82 E-value=0.088 Score=56.21 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=32.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+..|-.|+||||++.++|..++++|.+|+++++..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4555599999999999999999999999999999864
No 326
>PLN02924 thymidylate kinase
Probab=93.80 E-value=0.11 Score=49.96 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=34.3
Q ss_pred ccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 169 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
..++++.|+|- |--|+||||.+..|+..|..+|++|.++.
T Consensus 12 ~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 12 VESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 44567788887 88999999999999999999999987664
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.80 E-value=0.087 Score=56.35 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=32.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+.+|-.|+||||++.++|..+++.|.+|++|+.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 4455699999999999999999999999999999874
No 328
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=93.80 E-value=0.74 Score=41.37 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+......+....+..++.++++... +..++..+.+.+..+.... ...+-+|.|+.+.
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 35678899976432222222223456777777655 4556667776666665432 1235678899764
No 329
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.78 E-value=0.092 Score=53.89 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
.|.-..|-.|+|||+++.+||...+. .+.+|++||+.-
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 45555599999999999999976652 236999999974
No 330
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.77 E-value=0.14 Score=57.90 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=33.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|....|-.|+||||++.+++...++.|.+|++||+.-..
T Consensus 62 iteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~ 100 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL 100 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch
Confidence 444558999999999999999988999999999998543
No 331
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.66 E-value=0.11 Score=45.19 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=32.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+.++ |..|+||||++..++..+...+.+|..+++....
T Consensus 21 ~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 21 NLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 45555 9999999999999999998888899999886533
No 332
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=93.66 E-value=4.9 Score=38.54 Aligned_cols=68 Identities=12% Similarity=0.011 Sum_probs=40.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (527)
..|++.|+|+++.-....+.......+|.+++|...+ ..++..+...+..+.... ...+-+|.|+++.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 4577899999874332222222244578888887654 346666665544444321 1236788899775
No 333
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.64 E-value=0.98 Score=40.69 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~-------~~~~~~~~~a~d~viiV~~p~~~--s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 346 (527)
..+.++|||+-... .......+..+|.+++|+..... ++.......+.+... +.+ +-+|+|+++.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc
Confidence 37889999873210 01111123357888888887654 566666666655543 344 4578899774
No 334
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=93.53 E-value=3.7 Score=39.01 Aligned_cols=67 Identities=12% Similarity=0.095 Sum_probs=39.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+++.-....+.......+|.+++|...+. .++..+...+..+.+. ....+-+|.|+.+.
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 3567899997743222222222345688888777644 5666776666655432 22345678899664
No 335
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.53 E-value=0.11 Score=50.14 Aligned_cols=38 Identities=34% Similarity=0.345 Sum_probs=34.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
+-++|. |.-|+|||+++..|...+. +.|.+|+++|..-
T Consensus 24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 568888 8999999999999999999 8899999998764
No 336
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.51 E-value=0.077 Score=48.42 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.|.++ |..|+||||+|..||..| |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 455555 999999999999999987 43 4557663
No 337
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.51 E-value=4.4 Score=37.38 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc--CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK--LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~--~~~~~~gvV~N~~~~ 346 (527)
.++.+.|+|+|+.-............+|.+++|+..+. .++..+...+..+ .. .....+-+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 45678999998643222222222456788888887643 4455555444333 22 112335688899664
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.50 E-value=0.2 Score=54.22 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~ 212 (527)
+++.|. |-.|+||||+|.++++.-+++ |.++++|.++.
T Consensus 22 ~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 22 RSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 455555 899999999999999886665 99999999984
No 339
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.50 E-value=0.15 Score=46.95 Aligned_cols=35 Identities=40% Similarity=0.462 Sum_probs=25.1
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|-|+.| -|=||||-|..+|...+-+|+||+++=+=
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G~G~rV~ivQFl 40 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAGHGMRVLIVQFL 40 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence 334434 45699999999999999999999999653
No 340
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.47 E-value=0.089 Score=53.77 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=33.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+-+.++ |..|+|||+++..+|..+.++|++|+.++++-
T Consensus 184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 456666 88999999999999999999999999998853
No 341
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=93.47 E-value=1.8 Score=38.63 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
.+.+-|+|+|+.-....+.-.....++.++++... +..++..+....+.+... +.++ -+|.|+++.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 118 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPM-VLVGNKCDL 118 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 34567889976432211111113356777777654 345666666665555432 4554 478899764
No 342
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.45 E-value=1.3 Score=39.39 Aligned_cols=66 Identities=15% Similarity=0.051 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-CC-CCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-LK-VPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~-~~-~~~~gvV~N~~~~ 346 (527)
+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+.. .+ -..+-++.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 457899998743332222222345677888877654 356666666665543 22 1236688899765
No 343
>PRK08118 topology modulation protein; Reviewed
Probab=93.45 E-value=0.073 Score=48.83 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=19.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+.|.|+ |-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 456666 889999999999888765
No 344
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.38 E-value=0.11 Score=55.41 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~ 214 (527)
+.+.++..|+||||++.++|..+|. .|++|+++.++...
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 5555699999999999999999986 69999999998643
No 345
>PRK08006 replicative DNA helicase; Provisional
Probab=93.37 E-value=0.11 Score=55.91 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~ 213 (527)
-+.|..+..|+|||++|.|+|..+|. .|++|+++.+.-.
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~ 264 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP 264 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 34555599999999999999999984 6999999988853
No 346
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.36 E-value=1.6 Score=39.02 Aligned_cols=68 Identities=9% Similarity=0.046 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-------CCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-------VPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~-------~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+.-....+.......+|.++++..+.. .++..+...+..+.+.. ...+-+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 35678899998743222221112345788888887654 34555656555554321 2346778899764
No 347
>COG2403 Predicted GTPase [General function prediction only]
Probab=93.34 E-value=0.11 Score=52.56 Aligned_cols=37 Identities=35% Similarity=0.479 Sum_probs=35.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.+|+|+...-|+|||+++..+|..|.++|+||++|=.
T Consensus 127 PviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 127 PVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred ceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 5899999999999999999999999999999999866
No 348
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=93.34 E-value=0.84 Score=41.66 Aligned_cols=67 Identities=9% Similarity=-0.071 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (527)
.+.+.|.|+|+......+....+..+|.+++|..... .++......+..+.+.. ...+-+|.|+.+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 48 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred EEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 3568899998643322222233456788888887744 46777766666553322 2346788899764
No 349
>PF13173 AAA_14: AAA domain
Probab=93.33 E-value=0.11 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+++++. |--||||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 455555 7788999999999998887 56789999998543
No 350
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.32 E-value=0.1 Score=49.36 Aligned_cols=34 Identities=41% Similarity=0.482 Sum_probs=26.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++|+++ |+-|+||||+|- .|++.|. -+||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~----~~~~~G~--~vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAK----ILAELGF--PVIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHH----HHHHcCC--eEEEccH
Confidence 67899999 999999999865 4445565 4578885
No 351
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=93.31 E-value=1.3 Score=41.13 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=37.3
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
+.+-|+|+++......+.......+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 44567788764322111111133578888887663 34555566666666554 344 5678899764
No 352
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=93.28 E-value=0.66 Score=49.28 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=43.2
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc--chHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++.+.+.|+|||+.-.........+..+|.+++|+.... .-.......+.++...+.+.+-+++|+++.
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 467899999998732211111222446799999987764 222233445556666776667788999764
No 353
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.26 E-value=0.12 Score=52.97 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=29.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~~ 213 (527)
.|....|..|+|||+++.++|...+. .+.+|++||+.-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 45555599999999999999976542 2348999999853
No 354
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.24 E-value=0.17 Score=51.27 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++++-+++ ..|+||||++..+...+.+.|..+++||..-
T Consensus 53 G~ivEi~G-~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~ 91 (322)
T PF00154_consen 53 GRIVEIYG-PESSGKTTLALHAIAEAQKQGGICAFIDAEH 91 (322)
T ss_dssp TSEEEEEE-STTSSHHHHHHHHHHHHHHTT-EEEEEESSS
T ss_pred CceEEEeC-CCCCchhhhHHHHHHhhhcccceeEEecCcc
Confidence 67888885 5789999999999999988999999999974
No 355
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.23 E-value=1.6 Score=38.90 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=38.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+.-.........+..+|.++++..++. .++..+...+..+... +.+ +-+|.|+.+.
T Consensus 48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 4678899998742221122222446788888876654 4555566665555433 344 6678898654
No 356
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=93.22 E-value=1.2 Score=39.81 Aligned_cols=88 Identities=9% Similarity=0.139 Sum_probs=48.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc--CCCCEEEEEEecccccCCCccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
..+++.|+|+|+.-....+.......+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+.+......
T Consensus 49 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~---- 123 (162)
T cd04106 49 EDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAV---- 123 (162)
T ss_pred CEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccC----
Confidence 3567899999874322222222244678877776543 3455666555555543 2555 457889976432211
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+.+.+.++.+
T Consensus 124 v~~~~~~~~~~~~~~~ 139 (162)
T cd04106 124 ITNEEAEALAKRLQLP 139 (162)
T ss_pred CCHHHHHHHHHHcCCe
Confidence 1123345566666653
No 357
>PRK04040 adenylate kinase; Provisional
Probab=93.20 E-value=0.11 Score=48.63 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=24.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rV 205 (527)
|+++|+|+ |-.|+||||++..|+..|. .|.++
T Consensus 1 ~~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 1 MMKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CCeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 35677776 8999999999999999885 24444
No 358
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.20 E-value=0.15 Score=49.28 Aligned_cols=39 Identities=33% Similarity=0.355 Sum_probs=32.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEE-EEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVll-ID~D~~ 213 (527)
.+|++. |..|+||||++-.|+..+...+..+.+ +.+|..
T Consensus 34 ~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 34 TIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 466666 999999999999999999987777666 777754
No 359
>PF05729 NACHT: NACHT domain
Probab=93.18 E-value=0.097 Score=47.06 Aligned_cols=26 Identities=38% Similarity=0.274 Sum_probs=22.6
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMG 202 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G 202 (527)
.+..|.+|+||||++..++..++..+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcC
Confidence 44559999999999999999999765
No 360
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=93.15 E-value=2 Score=38.48 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+......+.-.....+|.++++...+ ..++..+...+..+.. .+.| +-+|.|+++..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcch
Confidence 456778999764322222122234567777776543 4456666655555432 2455 55888997653
No 361
>PRK05642 DNA replication initiation factor; Validated
Probab=93.12 E-value=0.11 Score=50.36 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=31.0
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+..|..|+|||.++..++..+.++|++|+.++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 44499999999999999999988899999999863
No 362
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.12 E-value=0.18 Score=50.47 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC--CCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~--G~rVllID~D~~~ 214 (527)
+.+|+|. |-.|+||||++..|+..+.+. +.+|.++..|...
T Consensus 62 p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3577777 889999999999998888753 4579999999755
No 363
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=93.10 E-value=0.96 Score=50.01 Aligned_cols=64 Identities=14% Similarity=0.082 Sum_probs=42.3
Q ss_pred CEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 282 D~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.+.|+|||+......+.......+|.+++|+..+..........+..++..+++ +-+++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECccc
Confidence 689999987543322222234457889999877654445555566667777888 5578899764
No 364
>PRK08727 hypothetical protein; Validated
Probab=93.09 E-value=0.12 Score=50.18 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=30.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.++ |..|+|||.++..++..+.+.|++|.++.++
T Consensus 44 l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 44 LYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 5555 8899999999999999999999999999754
No 365
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=93.09 E-value=2.6 Score=38.40 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-HcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~ 346 (527)
+...+.++|+|+...........+..+|.+++|+..+.. ++..+...+..+ +.. +.+ +-++.|+++.
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCC
Confidence 345789999987432222212224567888888776543 344444433333 221 344 6678899763
No 366
>PRK05748 replicative DNA helicase; Provisional
Probab=93.06 E-value=0.12 Score=55.33 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=33.1
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~ 214 (527)
+.+.++..|+||||++.|+|...|. .|++|+++.+....
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 4555699999999999999999884 69999999988643
No 367
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.04 E-value=0.13 Score=52.07 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+-+.++ |..|+|||.++..+|..|+++|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 445555 8899999999999999999999999999764
No 368
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.04 E-value=4.3 Score=38.34 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
.+.+-|.|+++.-....+...-+..+|.+++|... +..++..+...++.++... ...+-+|.|+++..
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 46788999976433222222224467888888654 4567778777777666532 12356788997653
No 369
>PRK08840 replicative DNA helicase; Provisional
Probab=93.02 E-value=0.13 Score=55.13 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=33.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~ 213 (527)
-+.|.++..|+|||+++.|+|...|. .|++|+++.+...
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 35555699999999999999999984 6999999998863
No 370
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=93.00 E-value=1.8 Score=45.97 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~---------~--~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+..+.|+|||+-... . ..+...+..+|.+++|+.........-.+.+..+.+.+.+ +-+|+|+++.
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl 295 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDL 295 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECccc
Confidence 446899999862110 0 0112234567899998876653333334556666666766 5578899764
No 371
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.00 E-value=2.9 Score=38.62 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~~~~~~~ 353 (527)
+++.+.++|+|+...........+..+|.+++|+.... .++..+...+..+ +. .+.+ +-+|.|+.+....
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~---- 133 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYA---- 133 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC----
Confidence 45678899998643322222222456788888877543 3344444433332 21 2444 6688899764211
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
-..+++.+.++.
T Consensus 134 -----~~~~~i~~~l~l 145 (184)
T smart00178 134 -----ASEDELRYALGL 145 (184)
T ss_pred -----CCHHHHHHHcCC
Confidence 235677777764
No 372
>PRK06904 replicative DNA helicase; Validated
Probab=92.99 E-value=0.12 Score=55.46 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=32.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~ 213 (527)
+.|.++.+|+|||+++.|+|...|. .|++|+++.+...
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 5555699999999999999999885 5999999998863
No 373
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=92.99 E-value=0.32 Score=56.23 Aligned_cols=66 Identities=12% Similarity=-0.000 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.|-+-|||||+......-...++..+|.+++|+....--.....+.++.+...+++.+ +++|+.+.
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~ 162 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDR 162 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCcc
Confidence 4556799998754433333444667899999998776555566778888888888864 77799754
No 374
>PRK04328 hypothetical protein; Provisional
Probab=92.98 E-value=0.18 Score=49.43 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=33.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.|. |-.|+|||+++.++++.-+++|.++++|+++-
T Consensus 24 s~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 24 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 455555 88999999999999999888899999999976
No 375
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=92.98 E-value=1.2 Score=40.30 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=39.7
Q ss_pred CCCCEEEEeCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~-~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
..+.+-|+|+++.-... .+.......+|.+++|..++. .++..+...++.+... ++| +-+|.|+++.
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34788899997643211 111111335688888877654 4666666666555543 344 5678899764
No 376
>PF12846 AAA_10: AAA-like domain
Probab=92.92 E-value=0.13 Score=51.24 Aligned_cols=33 Identities=42% Similarity=0.477 Sum_probs=29.7
Q ss_pred eeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.|+.|+||||++.++...+...|.+|+++|..
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 349999999999999999999999999999554
No 377
>PRK06761 hypothetical protein; Provisional
Probab=92.90 E-value=0.12 Score=51.49 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=30.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEE-EEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVll-ID~D~ 212 (527)
.++|.|. |..|+||||++..|+..|...|.+|-. .+.|.
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL 42 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence 3455555 889999999999999999888888875 45554
No 378
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=0.3 Score=42.93 Aligned_cols=59 Identities=14% Similarity=0.380 Sum_probs=46.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeE--EEEec---CC--CeEEEEEEeCCCCCCcHHHH
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKD--MQINE---AL--GEVSFRLELTTPACPIKDMF 131 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lglI~~--v~i~~---~~--~~v~v~l~lt~~~cp~~~~l 131 (527)
.....+.+.+-++.|.|||=+..+-+|+.|+. |++.+ .. .-|.|.+++|-|.|.++..|
T Consensus 32 ~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlI 97 (161)
T KOG3381|consen 32 DSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLI 97 (161)
T ss_pred cchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEEEEEeccCCCcchHHhhh
Confidence 55677889999999999999998888888854 44432 11 36889999999999988654
No 379
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=92.89 E-value=0.85 Score=50.60 Aligned_cols=84 Identities=11% Similarity=0.043 Sum_probs=46.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 359 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (527)
.|.+.|+|||+...........+..+|.+++|+.............+..+...+++ +-+|+|+++..... ...
T Consensus 69 ~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~------~~~ 141 (595)
T TIGR01393 69 TYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD------PER 141 (595)
T ss_pred EEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC------HHH
Confidence 47789999987543222223335578999999887543222222223333345676 55788997643211 012
Q ss_pred hHHHHHHHhCC
Q 009721 360 SGSQVVQQFGI 370 (527)
Q Consensus 360 ~~~~~~~~~g~ 370 (527)
..+++.+.++.
T Consensus 142 ~~~el~~~lg~ 152 (595)
T TIGR01393 142 VKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHhCC
Confidence 34566666664
No 380
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=92.88 E-value=0.15 Score=49.14 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.+ .|..|+|||+++..++..+.+.|.++..+++..
T Consensus 44 ~~~l-~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYL-WGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3444 499999999999999999988999999999864
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.88 E-value=0.14 Score=48.65 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=30.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.+|+|. |..|+||||++..|+..+.. ..+.++..|...
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~ 44 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNYY 44 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEecccccc
Confidence 4577776 89999999999999987754 467777777653
No 382
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=92.88 E-value=0.28 Score=54.19 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++.+.|+|+|+.-............+|.+++|+..+..........+..+...+++.+-+++|+++.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 4678999997632222222333456799999988776433445555667777888867789999764
No 383
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.86 E-value=1.3 Score=41.76 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~ 210 (527)
|.| +|..|+||||+...|+..+... +.+++.++-
T Consensus 4 ilI-~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 4 VLV-TGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 444 4999999999999988888754 456665543
No 384
>PLN03110 Rab GTPase; Provisional
Probab=92.86 E-value=4.2 Score=38.76 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|.|+++......+.......++.+++|.... ..++..+...+..+... +.+ +-+|.|+++.
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 129 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDL 129 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhc
Confidence 356788899764322222222244677788777654 45666666666666543 343 5677899764
No 385
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=92.85 E-value=0.42 Score=53.16 Aligned_cols=66 Identities=14% Similarity=0.082 Sum_probs=44.6
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.-+-|||||+.-.........+..+|.+++|+..+..-.......+..+...+++.+-+|+|+++.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 346799998632221222333456799999988776545556666777888888877789999764
No 386
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=92.84 E-value=1.4 Score=39.43 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=38.0
Q ss_pred CCCCEEEEeCCCCCCh---------h--hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---------~--~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+..++.++|||+-... . .........+|.+++++.............+..+...+.+ +-+++|+++.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEecccc
Confidence 3456889999763211 0 0011123456888888876554333334555566555666 4578899753
No 387
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=92.84 E-value=1.9 Score=38.14 Aligned_cols=68 Identities=10% Similarity=0.082 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-C--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-K--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-~--~~~~gvV~N~~~~~ 347 (527)
.+.+.++|+|+...........+..+|.++++...+. .++..+......+... + ...+-+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc
Confidence 4678899998854322222222445688888876643 3555555555554432 1 23456888997643
No 388
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=92.83 E-value=1 Score=51.54 Aligned_cols=89 Identities=13% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCCCEEEEeCCCCCChhh----------hh--hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQ----------LT--LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~----------~~--~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++++.++|+|+..+... .. ......+|.+++|+..+... ........+.+.+.| .-+++||++.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhh
Confidence 567899999987432110 00 11112578888888776532 222344556677887 4577799775
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
..+.. . ....+++.+.+|.|++..
T Consensus 125 ~~~~~----i-~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 125 AEKQN----I-RIDIDALSARLGCPVIPL 148 (772)
T ss_pred hhccC----c-HHHHHHHHHHhCCCEEEE
Confidence 32211 1 134677888999886644
No 389
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=92.81 E-value=4.8 Score=38.09 Aligned_cols=96 Identities=6% Similarity=-0.070 Sum_probs=53.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----------------------CCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----------------------KVP 335 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~----------------------~~~ 335 (527)
..|.+-|.|+++.-....+...-...++.+++|... +..++..+...+..+... ++|
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 356788999976533222222224457888888654 456777777766655431 244
Q ss_pred EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 336 CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 336 ~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
+-+|.|+++..................+++++|.+.+..
T Consensus 132 -iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~ 170 (202)
T cd04102 132 -LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINL 170 (202)
T ss_pred -EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEE
Confidence 558999977532211000001112446778888775554
No 390
>PRK07933 thymidylate kinase; Validated
Probab=92.75 E-value=0.23 Score=47.50 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=32.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.|+|- |--|+||||.+..|+..|..+|++|.++..-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~ 38 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFPR 38 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56666 77899999999999999999999999987643
No 391
>PLN00223 ADP-ribosylation factor; Provisional
Probab=92.68 E-value=8.1 Score=35.56 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-c--CCCCEEEEEEecccccCCCcccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-K--LKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~-~--~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
+.+.+.|.|+|+......+.......+|.+++|..... .++..+...+..+- . .....+-+|.|+.+....
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----- 133 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----- 133 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-----
Confidence 45678899997632211121112445788888877654 34555544443332 1 122346788899764321
Q ss_pred ccCCchHHHHHHHhCCC
Q 009721 355 PFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (527)
...+++.+.++..
T Consensus 134 ----~~~~~~~~~l~l~ 146 (181)
T PLN00223 134 ----MNAAEITDKLGLH 146 (181)
T ss_pred ----CCHHHHHHHhCcc
Confidence 1356777777653
No 392
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.61 E-value=0.1 Score=47.04 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=19.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
+|++ ||+.|+||||+|..||..+.
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHhC
Confidence 4555 59999999999998887663
No 393
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=92.61 E-value=1.8 Score=38.58 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~ 120 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLE 120 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCcccc
Confidence 457789998743322222222445688877766543 345555554444433 2455 45677997643
No 394
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.61 E-value=1.6 Score=40.89 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCCCh---hh-----hhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGD---IQ-----LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~---~~-----~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.++|+|+|+-... .. ........+|.++++...... +........+++... +.+ +-+|.|+++.
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl 165 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDL 165 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEcccc
Confidence 347888999763211 00 011113357888888765432 333344444555544 334 5678899764
No 395
>PRK06321 replicative DNA helicase; Provisional
Probab=92.60 E-value=0.16 Score=54.57 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=32.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~ 213 (527)
+.+.++..|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 445559999999999999999998 46999999988864
No 396
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=92.59 E-value=6.3 Score=36.86 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEecccccCCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFDADG 350 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~~~~ 350 (527)
..+.+.|.|+|+.-....+.-..+..++.+++|...+ ..++..+......+.. .++| +-+|.|+.+.....
T Consensus 48 ~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~ 126 (201)
T cd04107 48 TVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRL 126 (201)
T ss_pred CEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccccc
Confidence 3567889999874322222222244678888887764 4566666655554432 2344 46788997653211
Q ss_pred ccccccCCchHHHHHHHhC
Q 009721 351 KRYYPFGRGSGSQVVQQFG 369 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g 369 (527)
....+..+++.+..+
T Consensus 127 ----~~~~~~~~~~~~~~~ 141 (201)
T cd04107 127 ----AKDGEQMDQFCKENG 141 (201)
T ss_pred ----ccCHHHHHHHHHHcC
Confidence 112234555565555
No 397
>PRK08181 transposase; Validated
Probab=92.58 E-value=0.14 Score=50.72 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=31.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
-+.++ |..|+|||.++..+|..+.++|++|+.+.+.
T Consensus 108 nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 108 NLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred eEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 45555 8999999999999999999999999999763
No 398
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.56 E-value=0.29 Score=48.85 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=31.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+|.++ +..|+||||+.-.|...|... +++.+|+-|..
T Consensus 105 ~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~ 142 (290)
T PRK10463 105 LVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ 142 (290)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence 477777 789999999999999988654 58999988864
No 399
>PRK06547 hypothetical protein; Provisional
Probab=92.49 E-value=0.14 Score=47.15 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=25.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+++|+|. |..|+||||+|..||..+ | +.++++|-.
T Consensus 15 ~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 15 MITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 4566666 899999999999998763 3 445666643
No 400
>PRK07261 topology modulation protein; Provisional
Probab=92.45 E-value=0.15 Score=47.01 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~L 198 (527)
.|+|+ |-+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46666 899999999999987654
No 401
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=92.45 E-value=2.2 Score=38.39 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+++...........+..++.+++|... +..++..+...++.+.... ...+-+|.|+++..
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 35678889975322222222223456777777654 3445666666666665432 22367888997653
No 402
>PLN03118 Rab family protein; Provisional
Probab=92.43 E-value=1.6 Score=41.25 Aligned_cols=66 Identities=12% Similarity=0.030 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHH-HHHHc----CCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~-~~l~~----~~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|||+.-....+....+..+|.+++|...+. .++..+...+ ..+.. .+.+ +-+|.|+++.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4678999998753322222222446788888876544 3455554432 22221 1233 4577899664
No 403
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.38 E-value=0.22 Score=52.07 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=33.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+-+|+|. |-.|+||||++..|...+...|.+|..|..|-.-
T Consensus 212 PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 212 PLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 3456655 8899999999999998888778999999888644
No 404
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=92.38 E-value=1.6 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.4
Q ss_pred EEEEeeCcCCChhHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA 195 (527)
.|++. |..|+||||+.-.|.
T Consensus 2 ~i~~~-G~~~~GKssli~~l~ 21 (168)
T cd01897 2 TLVIA-GYPNVGKSSLVNKLT 21 (168)
T ss_pred eEEEE-cCCCCCHHHHHHHHh
Confidence 46777 899999999988763
No 405
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=92.36 E-value=2.6 Score=40.41 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhc-CCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~-a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+.- ...... ... .+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.
T Consensus 48 ~~~~l~i~Dt~G~~-~~~~~~-~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 48 EESTLVVIDHWEQE-MWTEDS-CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEEEEEeCCCcc-hHHHhH-HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 35678899997753 111111 122 5788888876644 4666666666666543 344 5678899764
No 406
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=92.32 E-value=8.4 Score=34.89 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=42.7
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccCC
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
+.+++.|++.......+.......+|.+++|...+. .++..+...++.+... +.| +-+|.|+++...... ...
T Consensus 54 ~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~----~~~ 128 (169)
T cd01892 54 KYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQ----RYE 128 (169)
T ss_pred EEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccc----ccc
Confidence 345666776532211111111346788888877633 4555555555544322 344 667889976432111 011
Q ss_pred chHHHHHHHhCC
Q 009721 359 GSGSQVVQQFGI 370 (527)
Q Consensus 359 ~~~~~~~~~~g~ 370 (527)
...+++.+.++.
T Consensus 129 ~~~~~~~~~~~~ 140 (169)
T cd01892 129 VQPDEFCRKLGL 140 (169)
T ss_pred cCHHHHHHHcCC
Confidence 234566666664
No 407
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.31 E-value=0.15 Score=46.57 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=27.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
||+.|.++ |-.|+||||++..||..| |. -++|.|..
T Consensus 1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~~ 36 (171)
T PRK03731 1 MTQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQW 36 (171)
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccHH
Confidence 45667766 889999999999999877 44 36788853
No 408
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.31 E-value=2.2 Score=38.83 Aligned_cols=66 Identities=8% Similarity=0.012 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 346 (527)
.+.+.++|+|+.-.........+..+|.+++|...... ++......+..+ .. .+.+ +-+|.|+++.
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECccc
Confidence 46788999976432111212224467888888776554 455444444333 21 2444 5588899764
No 409
>PRK06893 DNA replication initiation factor; Validated
Probab=92.31 E-value=0.17 Score=48.88 Aligned_cols=35 Identities=9% Similarity=-0.099 Sum_probs=31.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.++ |..|+|||+++..+|..+.++|++|.++.++
T Consensus 42 l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4444 9999999999999999999999999999885
No 410
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.29 E-value=0.11 Score=45.85 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.6
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+..|..|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 45569999999999988876554 67788886
No 411
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.20 E-value=0.17 Score=48.93 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
+|+|+ |+.||||+...||..|..+|+||++-
T Consensus 1 vi~~v---G~gGKTtl~~~l~~~~~~~g~~v~~T 31 (232)
T TIGR03172 1 VIAFV---GAGGKTSTMFWLAAEYRKEGYRVLVT 31 (232)
T ss_pred CEEEE---cCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 46677 55899999999999999999999884
No 412
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=92.19 E-value=5.8 Score=37.02 Aligned_cols=87 Identities=8% Similarity=0.043 Sum_probs=49.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC-CCCEEEEEEecccccCCCccccccC
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
.+.+-|.|+++.-....+.......+|.+++|... +..++..+...++.+... ....+-+|.|+.+..... ...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~----~v~ 129 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR----QVA 129 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc----CCC
Confidence 46678889976432222221223467888887665 567888888877777653 222356788997653211 112
Q ss_pred CchHHHHHHHhCC
Q 009721 358 RGSGSQVVQQFGI 370 (527)
Q Consensus 358 ~~~~~~~~~~~g~ 370 (527)
.+..+.+++..+.
T Consensus 130 ~~~~~~~a~~~~~ 142 (189)
T cd04121 130 TEQAQAYAERNGM 142 (189)
T ss_pred HHHHHHHHHHcCC
Confidence 2345555555554
No 413
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.17 E-value=2.4 Score=38.35 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=16.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA 195 (527)
..|+++ |..|+||||+...+.
T Consensus 15 ~~v~i~-G~~g~GKStLl~~l~ 35 (173)
T cd04155 15 PRILIL-GLDNAGKTTILKQLA 35 (173)
T ss_pred cEEEEE-ccCCCCHHHHHHHHh
Confidence 357777 899999999977663
No 414
>PRK09165 replicative DNA helicase; Provisional
Probab=92.17 E-value=0.18 Score=54.60 Aligned_cols=39 Identities=26% Similarity=0.510 Sum_probs=32.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC---------------CCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~---------------G~rVllID~D~~~ 214 (527)
+.+.++..|+||||++.|+|...|+. |++|+++.+....
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 45556999999999999999999853 7899999887643
No 415
>PRK03003 GTP-binding protein Der; Reviewed
Probab=92.16 E-value=2.6 Score=45.44 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=27.7
Q ss_pred hcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 302 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 302 ~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+..+|.+++|+..+.. +..+. +.+..+...+.+ +-+|+|+++.
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~p-iIiV~NK~Dl 334 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRA-LVLAFNKWDL 334 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCC-EEEEEECccc
Confidence 3467888888876553 34433 455566656666 5678899764
No 416
>PLN03108 Rab family protein; Provisional
Probab=92.14 E-value=7 Score=36.99 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
+.+-|+|++.......+....+..+|.+++|...... ++..+...+..+... +.+ +-+|.|+++..... ..
T Consensus 55 i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~----~~ 129 (210)
T PLN03108 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRR----AV 129 (210)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc----CC
Confidence 3466788865332222222223456778888766543 455554544444322 344 45778997643211 11
Q ss_pred CCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC--CCCHHHHHHHHHHHHHHHHHH
Q 009721 357 GRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD--PCGEVANTFQDLGVCVVQQCA 417 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~--p~s~~a~~~~~la~~i~~~~~ 417 (527)
..+..+++.+.++.+ +++.. ......+.|..+++.+.+++.
T Consensus 130 ~~~~~~~~~~~~~~~--------------------~~e~Sa~~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 130 STEEGEQFAKEHGLI--------------------FMEASAKTAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CHHHHHHHHHHcCCE--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 122344555555432 11111 123456668888888876654
No 417
>PRK05636 replicative DNA helicase; Provisional
Probab=92.11 E-value=0.2 Score=54.25 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=33.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~ 213 (527)
-+.+.++..|+||||++.|+|...| +.|++|+++.+...
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 4555569999999999999999988 56899999988864
No 418
>PLN02796 D-glycerate 3-kinase
Probab=92.10 E-value=0.23 Score=50.72 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=33.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
-+|+|. |-.|+||||++..|+..+...|.++..|..|-.
T Consensus 101 liIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 101 LVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred EEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 456666 889999999999999999887888988888753
No 419
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.08 E-value=0.23 Score=46.77 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=28.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.+..|..|+||||+...++..+...|++|+++-.
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 44445889999999999999999999999999844
No 420
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=92.07 E-value=4 Score=37.29 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-cC--CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL--KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~-~~--~~~~~gvV~N~~~~ 346 (527)
..+.+.|.|+|+......+...-+..+|.+++|...+. .++..+...+..+. .. ....+.+|.|+++.
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 35678999998643332222222456788888877654 34655555554432 21 12346789999764
No 421
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=92.01 E-value=3 Score=36.91 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (527)
.+.+.++|+|+..............+|.+++|...+. .++..+...++.+... +.+ +-+|.|+++..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3457888987632221111111335688888876543 3555555554444433 233 56778997643
No 422
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.00 E-value=0.15 Score=48.64 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=25.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHH--------HHCCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~L--------A~~G~rVllID 209 (527)
++++.|-+|+||||+.+.++..+ ...+++|+++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeec
Confidence 67778999999999999999988 34566666663
No 423
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.99 E-value=0.17 Score=46.19 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVll 207 (527)
.|+|+ |-+||||||+|-.|+ +.|+++.-
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~i~ 29 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR----ELGYKVIE 29 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH----HhCCceee
Confidence 57777 899999999988777 45666543
No 424
>PRK08116 hypothetical protein; Validated
Probab=91.98 E-value=0.22 Score=49.44 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=30.5
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.+..|..|+|||.++..+|..|.++|++|+++++.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34448899999999999999999889999999854
No 425
>PRK07560 elongation factor EF-2; Reviewed
Probab=91.98 E-value=0.48 Score=53.97 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=45.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++|-+.+||||+...........+..+|.+++|+.....-.......++.+.+.+.+. -+++|+++.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4677899999875433222233355679999998766554455667777766667776 477899764
No 426
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.98 E-value=1.8 Score=38.92 Aligned_cols=66 Identities=14% Similarity=0.120 Sum_probs=34.1
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-HcC------CCCEEEEEEeccccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SKL------KVPCIAVVENMCHFD 347 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~~------~~~~~gvV~N~~~~~ 347 (527)
+-+.++|+|+......+....+..+|.++++..... .++.........+ ... +.+ +-+|.|+.+..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECcccc
Confidence 345688997643222222222345788888876543 3444444433322 221 344 45788997643
No 427
>PRK13947 shikimate kinase; Provisional
Probab=91.94 E-value=0.22 Score=45.50 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.|.+. |-.|+||||++..||..| |++ ++|.|.
T Consensus 3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 35555 889999999999998877 554 578775
No 428
>PRK06921 hypothetical protein; Provisional
Probab=91.90 E-value=0.21 Score=49.51 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=31.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~ 210 (527)
..-+.++ |..|+|||+++..+|..+.++ |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 889999999999999999988 999999885
No 429
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.83 E-value=0.21 Score=48.47 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.++ |..|+|||+++..+|..+.+.|++|.++.++.
T Consensus 47 ~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34444 99999999999999999998999999999874
No 430
>PRK05380 pyrG CTP synthetase; Validated
Probab=91.83 E-value=0.57 Score=50.47 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=39.7
Q ss_pred cceEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCcc
Q 009721 172 ISNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 220 (527)
Q Consensus 172 ~~kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~ 220 (527)
|+|-|.|++| --|.||=.+|+.++..|..+|++|..+-+||+-+--+-.
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~Gt 50 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGT 50 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCC
Confidence 3566666644 678899999999999999999999999999987544333
No 431
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.80 E-value=0.22 Score=55.78 Aligned_cols=43 Identities=26% Similarity=0.263 Sum_probs=36.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~ 215 (527)
++++|.+. |..|+||||+|..|+..|...|..+.++|.|..+.
T Consensus 459 ~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 459 KPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 45566665 99999999999999999988899999999997653
No 432
>PRK09866 hypothetical protein; Provisional
Probab=91.73 E-value=0.78 Score=50.46 Aligned_cols=67 Identities=13% Similarity=0.018 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCC--hh--h-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCC-CEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTG--DI--Q-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV-PCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~--~~--~-~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~-~~~gvV~N~~~~ 346 (527)
..+.+|+||||+--. .. . ...-++..+|.+++|+.... .+..+ ..+++.+++.+. ..+-+|+|+++.
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccC
Confidence 357899999987322 11 1 12234667899999998765 33333 445666776663 135678899875
No 433
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=91.70 E-value=3.6 Score=36.96 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+.-....+.......++.+++|...+ ..++..+...++.++.. +.| +-+|.|+++.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (165)
T cd04140 47 NICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE 120 (165)
T ss_pred EEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence 3467889999875433322222244567777776543 45666666666666542 345 5578899764
No 434
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.66 E-value=0.16 Score=45.29 Aligned_cols=33 Identities=39% Similarity=0.396 Sum_probs=25.4
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+..|..|+||||+|..|+..+ | ..++|.|...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 3456999999999999998874 3 3567888654
No 435
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.65 E-value=0.19 Score=47.40 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=25.7
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.+.+|.+|+||||+|..||..+ |..+ ++..|.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~ 37 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY 37 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence 355556999999999999988874 5544 667775
No 436
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=91.65 E-value=0.24 Score=50.46 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=29.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH---CC---CcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~---~G---~rVllID~D~~ 213 (527)
.++.++ |..|+||||++.+++...+. .| .+|+.||....
T Consensus 97 ~i~~i~-G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 97 SITEIF-GEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred eEEEEE-CCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 444444 89999999999999974332 33 58999998753
No 437
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=91.62 E-value=0.33 Score=49.14 Aligned_cols=43 Identities=30% Similarity=0.184 Sum_probs=36.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
..+.+. |---+||||++.-|-.+..+.|+|.+.+|+|++.++.
T Consensus 104 Prv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~si 146 (415)
T KOG2749|consen 104 PRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSI 146 (415)
T ss_pred CEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCce
Confidence 355555 4457999999999999999999999999999988764
No 438
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=91.62 E-value=2 Score=40.48 Aligned_cols=66 Identities=20% Similarity=0.134 Sum_probs=38.6
Q ss_pred CCCEEEEeCCCC------CChh--hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecc
Q 009721 280 ELDYLVIDMPPG------TGDI--QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMC 344 (527)
Q Consensus 280 ~yD~IIID~pp~------~~~~--~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~------~~~~~gvV~N~~ 344 (527)
.|.+.|+|||+. .+.. ......+..+|.+++|..... .++..+....+.+... +.| +-+|.|++
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECc
Confidence 477889999762 1111 001122456799988887744 4566666655544332 344 56888997
Q ss_pred cc
Q 009721 345 HF 346 (527)
Q Consensus 345 ~~ 346 (527)
+.
T Consensus 127 Dl 128 (198)
T cd04142 127 DQ 128 (198)
T ss_pred cc
Confidence 65
No 439
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.51 E-value=0.88 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=34.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+..|.|. +-.|+|||++...+-..|... +++.+|-.|.+.
T Consensus 13 ~~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEec-CCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence 4567766 789999999999999999877 999999999875
No 440
>PRK07004 replicative DNA helicase; Provisional
Probab=91.45 E-value=0.24 Score=53.18 Aligned_cols=39 Identities=21% Similarity=0.444 Sum_probs=33.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~~~ 214 (527)
+.+.++..|+|||+++.|+|..+| +.|++|+++.+....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 455569999999999999999988 469999999888643
No 441
>CHL00189 infB translation initiation factor 2; Provisional
Probab=91.39 E-value=0.78 Score=51.86 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.++|||+.-.........+..+|.+++|+..+..........+..+...+++ +-+++|+++.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCc
Confidence 357899999986422222222234567999999876554334455566677777888 4578899764
No 442
>PRK06851 hypothetical protein; Provisional
Probab=91.38 E-value=0.42 Score=49.41 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=33.7
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.+..+++.+. |..|+||||+...++..+.++|++|.+.=+-
T Consensus 211 ~~~~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 211 EGVKNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred cccceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3444555554 9999999999999999999999999998653
No 443
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=91.31 E-value=2.8 Score=37.60 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHcCC--CCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~-p~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~ 346 (527)
.+.+-|.|+++......+.......+|.++++.. .+..++..+...++.+.... ...+-+|.|+.+.
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3557788987633222221122345677877765 34557777777766665432 2246678899654
No 444
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.30 E-value=0.18 Score=47.10 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=26.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|+|. |..|+||||+|..|+..+. .+.+|..|-..
T Consensus 2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~ 35 (187)
T cd02024 2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDDFF 35 (187)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEcccccc
Confidence 5555 8899999999999988862 46778777543
No 445
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=91.26 E-value=0.25 Score=46.52 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
||++|+++ |.-|+||||++..|+. .|. -+||+|.-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 56778887 8899999999887765 465 57899863
No 446
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.26 E-value=11 Score=33.92 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=34.5
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeC-CCcchHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~-p~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (527)
+.+-|+|+|+......+.......++.++++.. .+..++.........+.. .+.|++ ++.|+.+.
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 567788997633221111112334566666654 344466666555444432 246654 67899653
No 447
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.20 E-value=0.21 Score=43.11 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=30.1
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-----CCcEEEEEeCCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 214 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-----G~rVllID~D~~~ 214 (527)
+.+..|..|+|||+++.+++..+... ..+|+.+++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 44555999999999999999999864 5788888877654
No 448
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=91.15 E-value=4.4 Score=36.01 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+...........+..+|.++++..... .++..+...+..+... +.+ +-+|.|+.+.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~ 118 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDK 118 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcc
Confidence 34678999998743322222222345788888877654 4555555555544432 333 4577899654
No 449
>PRK13946 shikimate kinase; Provisional
Probab=91.14 E-value=0.24 Score=46.06 Aligned_cols=33 Identities=42% Similarity=0.476 Sum_probs=26.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.|.++ |-.|+||||++..||..| |.. .+|.|.
T Consensus 11 ~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 456666 889999999999999887 554 678884
No 450
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.11 E-value=0.26 Score=49.95 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~~ 213 (527)
.++-| .|..|+||||++.++|...+. .+.+|++||+.-.
T Consensus 96 ~i~ei-~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 96 AITEV-FGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 44444 499999999999999988763 2349999999853
No 451
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=91.03 E-value=7.1 Score=34.39 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~ 346 (527)
+.+-|+|+++.-....+....+..++.++++...+ ..++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 118 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL 118 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 34567899764322222222233567776665543 34556665555444432 445 4578899764
No 452
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=90.99 E-value=4.5 Score=36.50 Aligned_cols=67 Identities=6% Similarity=0.020 Sum_probs=39.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH-c-CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-K-LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~-~-~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+. . .+.+ +-+|.|+.+.
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 45678899997643322222223456788888877644 34555554444443 2 2455 4588899764
No 453
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.98 E-value=0.4 Score=45.04 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
++.|+|. |--|+||||++..|+..|...|+.|...
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 3577777 8899999999999999999888776654
No 454
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.87 E-value=0.47 Score=49.42 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=33.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+.+|.|+ |..|+||||++..|...|..+ ++|.+|.-+..
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~ 43 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSER-FSVGYYKHGCH 43 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCC
Confidence 3588888 778899999999999999999 99999976543
No 455
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.86 E-value=0.26 Score=49.03 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=29.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-CC-cEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GA-RVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~-rVllID~D~~~ 214 (527)
.++|+++ |-||+||||+|.+++...... .+ .|.-+++....
T Consensus 19 ~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 19 VRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred eEEEEEE-cCCcCCcceeeeeccccccccccccccccccccccc
Confidence 4577777 999999999999999875533 23 46667776543
No 456
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=90.81 E-value=0.22 Score=50.12 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=27.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
|+++|. ..|..|+||||+|..|+..+. ....+|.|..
T Consensus 1 m~~lii-l~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 1 MMKIIL-TVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred CcEEEE-EEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 344444 459999999999999888762 4677888764
No 457
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.80 E-value=4.4 Score=36.33 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=35.5
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~ 346 (527)
+.+.++|+|+...........+..+|.++++..... .++..+...+..++. .+.+ .-+|.|+.+.
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~ 124 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDL 124 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 457788997632222221222445677777776543 344444444444443 2344 3578899764
No 458
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.76 E-value=0.35 Score=41.63 Aligned_cols=31 Identities=32% Similarity=0.257 Sum_probs=24.7
Q ss_pred eeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 179 ~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
..|..|+||||++..+|..+ |..++-+|+..
T Consensus 3 l~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred EECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 34899999999999999987 56676666653
No 459
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=90.75 E-value=0.45 Score=46.70 Aligned_cols=41 Identities=27% Similarity=0.264 Sum_probs=34.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCc--EEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~r--VllID~D~~~ 214 (527)
+-||+++ |-.||||||+|..|+..|++.+.+ |-+|=+|-..
T Consensus 82 pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh 124 (283)
T COG1072 82 PFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH 124 (283)
T ss_pred CEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc
Confidence 3477776 889999999999999999998755 8888888644
No 460
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.73 E-value=0.35 Score=44.39 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=25.2
Q ss_pred EeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
+..|+.|+||||+...+...|...|.+|.-+
T Consensus 3 ~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 3 FITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 3459999999999999999998888776554
No 461
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.69 E-value=0.34 Score=53.32 Aligned_cols=40 Identities=35% Similarity=0.400 Sum_probs=34.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~ 213 (527)
+.+|.++ |..|+||||++..||..|.. .|.++.++|.|.-
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 3466665 99999999999999999987 7888999999964
No 462
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=90.69 E-value=3.9 Score=36.37 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHH-HHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVR-MFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~-~l~~~---~~~~~gvV~N~~~~ 346 (527)
....+.|+|+|+...........+..+|.+++++..+.. ++..+.+.+. .++.. +.| +-+|.|+++.
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 112 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDM 112 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCC
Confidence 346789999987533222222224567888888876553 3333333332 33322 444 5678899764
No 463
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.66 E-value=0.33 Score=46.21 Aligned_cols=40 Identities=30% Similarity=0.368 Sum_probs=32.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
.+|+|+ |-.|+||||+|..|...|... +|.+|-.|-+...
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~ 48 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD 48 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence 467776 778999999999999988754 8999999977643
No 464
>PTZ00301 uridine kinase; Provisional
Probab=90.58 E-value=0.49 Score=45.14 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=30.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH-CC-CcEEEEEeCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~-~G-~rVllID~D~~~ 214 (527)
.+|+|+ |-.|+||||+|..|+..|.. .| ..|.++-.|-+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 467776 77899999999999988854 34 346677777655
No 465
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=90.36 E-value=2.3 Score=48.39 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCCh---h-----hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---~-----~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.++|||+-... . ......+..+|.+++|+.....-...-..+.+.++..+.++ -+|+|+++.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pv-IlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPV-VLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 5667889999873311 0 01111244678899988765421122234566677777775 456799763
No 466
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=90.33 E-value=4.9 Score=41.13 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=37.2
Q ss_pred CCEEEEeCCCCCC-------hhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 009721 281 LDYLVIDMPPGTG-------DIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (527)
Q Consensus 281 yD~IIID~pp~~~-------~~~~~~~~~~a~d~viiV~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 344 (527)
+.++|+|+|.-.. .....+..+..++.+++|+..+.. .+.......+.+..+ +.+ .-+|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCc
Confidence 5689999976321 111122224457888888776543 445555554444433 344 45888997
Q ss_pred cc
Q 009721 345 HF 346 (527)
Q Consensus 345 ~~ 346 (527)
+.
T Consensus 284 DL 285 (329)
T TIGR02729 284 DL 285 (329)
T ss_pred cC
Confidence 64
No 467
>PRK03839 putative kinase; Provisional
Probab=90.30 E-value=0.3 Score=45.12 Aligned_cols=31 Identities=42% Similarity=0.522 Sum_probs=23.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|.++ |-.|+||||++..||..+ |+ -.+|+|
T Consensus 2 ~I~l~-G~pGsGKsT~~~~La~~~---~~--~~id~d 32 (180)
T PRK03839 2 IIAIT-GTPGVGKTTVSKLLAEKL---GY--EYVDLT 32 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 35555 889999999999888876 33 346666
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=90.29 E-value=0.34 Score=50.13 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=31.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHH--HHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~L--A~~G~rVllID~D 211 (527)
.+.|+.|-.|+|||.++.+||..| ...+.+++++-..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n 40 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGN 40 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEec
Confidence 466777999999999999999999 6777888777655
No 469
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=90.26 E-value=2 Score=38.85 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=38.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|||+......+....+..+|.++++...+ ..++..+. ..+..+... +.+ +-+|.|+++.
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 114 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDL 114 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhh
Confidence 3567899999875322222222234578888886654 34566554 344544432 444 5678899764
No 470
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=90.23 E-value=3.1 Score=37.31 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCC-hhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~-~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 346 (527)
.+.+-|+|+|+... ........+..+|.++++...+. .++..+......+... +.| +-+|.|+++.
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCch
Confidence 34577899987432 11111222445788888877644 5666666666555542 444 5677798664
No 471
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=90.17 E-value=3.3 Score=37.31 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+++.|+|+|+...........+..+|.+++|.... ..++..+. ..+..++.. +.+ +-+|.|+++..
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~ 116 (166)
T cd01893 45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLR 116 (166)
T ss_pred CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcc
Confidence 4578999999864322211112234578787776653 45555543 334444432 444 56778997653
No 472
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=90.16 E-value=4.1 Score=36.49 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=37.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc--C-CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK--L-KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~--~-~~~~~gvV~N~~~~ 346 (527)
..+.+.|.|+|+.-............+|.+++|...+. .++..+...+..+ .. . +.+ +.++.|+.+.
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 113 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDL 113 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCC
Confidence 34568899997632211121222456788888887654 3455555544333 22 1 244 5688899764
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.13 E-value=0.27 Score=42.11 Aligned_cols=21 Identities=43% Similarity=0.366 Sum_probs=18.7
Q ss_pred EeeCcCCChhHHHHHHHHHHH
Q 009721 178 VSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 178 v~s~KGGvGKTT~a~nLA~~L 198 (527)
+.+|..|+||||+|..|+..+
T Consensus 2 ~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 2 GISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 356999999999999999988
No 474
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=90.09 E-value=5.1 Score=37.10 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=36.9
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC------CCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL------KVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~ 346 (527)
+.+-|+|+|+.-....+....+..+|.+++|... +..++..+...++.+... +.+ +-+|.|+++.
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl 118 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDK 118 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhc
Confidence 4577889976432222221223456788777654 344566666666555432 344 4578899764
No 475
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.06 E-value=0.36 Score=49.14 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=30.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~ 212 (527)
.|....|..|+|||+++.++|...+.. +.+|++||++-
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 344444999999999999999887642 35999999985
No 476
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=90.01 E-value=3.5 Score=41.02 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=24.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++..|-=|+||||+--.++ ..++|+|+.+|--..
T Consensus 59 vtIITGyLGaGKtTLLn~Il--~~~hgKRIAVIlNEf 93 (391)
T KOG2743|consen 59 VTIITGYLGAGKTTLLNYIL--TGQHGKRIAVILNEF 93 (391)
T ss_pred eEEEEecccCChHHHHHHHH--ccCCCceEEEEhhhc
Confidence 44555777899999954432 236799999985443
No 477
>PRK13695 putative NTPase; Provisional
Probab=89.99 E-value=0.53 Score=43.25 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=25.8
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVl 206 (527)
.|+++ |.+|+||||+...++..+...|.++.
T Consensus 2 ~i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGIT-GPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 45666 88999999999999998887788764
No 478
>PRK13973 thymidylate kinase; Provisional
Probab=89.94 E-value=0.55 Score=44.81 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=30.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+.|+|- |--|+||||.+-.|+..|...|++|....
T Consensus 4 ~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 577775 88899999999999999999999997663
No 479
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=89.93 E-value=0.71 Score=46.52 Aligned_cols=66 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred CEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 282 D~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
.|-=+|||+-....--.+.....+|.+|+|+....-.+-..+.-+=+.++.|++.+.+.+|+++.-
T Consensus 118 hYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V 183 (449)
T KOG0460|consen 118 HYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLV 183 (449)
T ss_pred ccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEeccccc
Confidence 355679987544332233334567999999988887788888888888999999999999997754
No 480
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.83 E-value=0.52 Score=47.29 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=27.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.+|. .+|-.|+||||+|..||..| |..+ +|..|.-.
T Consensus 92 p~iIl-I~G~sgsGKStlA~~La~~l---~~~~-vi~~D~~r 128 (301)
T PRK04220 92 PIIIL-IGGASGVGTSTIAFELASRL---GIRS-VIGTDSIR 128 (301)
T ss_pred CEEEE-EECCCCCCHHHHHHHHHHHh---CCCE-EEechHHH
Confidence 34554 55999999999999999888 5553 56677644
No 481
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=89.82 E-value=0.34 Score=45.70 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+++.|+.|-+|+||||++..+...+. +...+.||.|...
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHH
Confidence 46677779999999999998877665 6678999999755
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.80 E-value=2.7 Score=43.33 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=24.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID 209 (527)
+.+.+|..|+||||+...|...+... +.+++.+.
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE 158 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE 158 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc
Confidence 34445999999999999988877653 45666553
No 483
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=89.80 E-value=1.5 Score=39.72 Aligned_cols=92 Identities=13% Similarity=0.066 Sum_probs=53.7
Q ss_pred CCCCEEEEeCCCCCCh------hh--hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009721 279 GELDYLVIDMPPGTGD------IQ--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~------~~--~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (527)
++..+.+||+|+-.+. .. .........|.++.|+..... ..-..+...+.+++.|. -+++||++.-.+.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~-vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPV-VVVLNKMDEAERK 121 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSE-EEEEETHHHHHHT
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCE-EEEEeCHHHHHHc
Confidence 4678999999983321 11 112212467899999988764 33345566677789884 5777997644322
Q ss_pred ccccccCCchHHHHHHHhCCCeEEeccC
Q 009721 351 KRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (527)
... -..+.+.+.+|.|++...-.
T Consensus 122 g~~-----id~~~Ls~~Lg~pvi~~sa~ 144 (156)
T PF02421_consen 122 GIE-----IDAEKLSERLGVPVIPVSAR 144 (156)
T ss_dssp TEE-----E-HHHHHHHHTS-EEEEBTT
T ss_pred CCE-----ECHHHHHHHhCCCEEEEEeC
Confidence 111 14788999999887766443
No 484
>PRK13975 thymidylate kinase; Provisional
Probab=89.78 E-value=0.35 Score=45.19 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
|++.|+|. |--|+||||++..||..|.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 45677777 8899999999999999884
No 485
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=89.58 E-value=0.46 Score=44.72 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
++|+++ |.-|+||||++..|+..+ |..| +|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 467777 889999999988877533 6644 588863
No 486
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=89.53 E-value=3.9 Score=44.18 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=16.6
Q ss_pred EEEEeeCcCCChhHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAY 196 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~ 196 (527)
-|+++ |..++||||+-..|..
T Consensus 161 dV~LV-G~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 161 DVGLV-GFPSAGKSSLISALSA 181 (500)
T ss_pred eEEEE-EcCCCCHHHHHHHHhc
Confidence 36666 8999999999877743
No 487
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=89.52 E-value=4.2 Score=36.07 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=35.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+ +. .+.+ +-+|.|+++.
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence 4568899997643222211122445688888776543 3445544443333 22 2444 6788899764
No 488
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=89.51 E-value=0.43 Score=46.57 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=25.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
|.+|+++ |.=|+||||++.-|+.. .|.. +||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~--viDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIE--VIDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCe--EEehHHH
Confidence 4678888 88899999998765532 3665 4899964
No 489
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.48 E-value=1.4 Score=40.76 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=29.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.++.++ | .|=||||-|..+|....-+|+||+++=+
T Consensus 29 Gli~V~T-G-~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 29 GLIIVFT-G-NGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred CeEEEEe-c-CCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 3445544 4 4579999999999999999999999865
No 490
>PLN02422 dephospho-CoA kinase
Probab=89.31 E-value=0.47 Score=45.92 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=26.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
|++|+++ |.-|+||||++..|+ +.|.. +||+|--
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~~g~~--~idaD~~ 34 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----SSGIP--VVDADKV 34 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----HCCCe--EEehhHH
Confidence 3567777 889999999988776 35764 5899963
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=89.30 E-value=0.55 Score=51.14 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=34.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.++.| .+-.|+|||+++.+++...++.|.+|++|+++-
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~ 311 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACRRGERCLLFAFEE 311 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 345555 489999999999999999999999999999975
No 492
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=89.30 E-value=6.4 Score=35.36 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc-------CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~ 346 (527)
..+.+.|.|+|+.-....+.......+|.++++...+ ..++..+......+.. .+.| +-+|.|+++.
T Consensus 52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (170)
T cd04116 52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDI 126 (170)
T ss_pred eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccc
Confidence 3467888999763222122222234567777776544 4456666555444332 1234 4578899764
No 493
>PLN02348 phosphoribulokinase
Probab=89.28 E-value=0.73 Score=47.90 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=32.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCC---------------CcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G---------------~rVllID~D~~~ 214 (527)
.-+|+|. |-.|+||||+|..|+..|...+ ..+.+|-+|-+.
T Consensus 49 p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 49 TVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 3467776 8899999999999999997542 468888888665
No 494
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=89.23 E-value=0.92 Score=46.02 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCCCEEEEeCCCCCChhhhhh-hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 279 GELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~-~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
.+-+|||.|||+-- ..+.++ ....-+|.+++.+..-.--+...+|---....+|++.+-+-+|+++.-. +.
T Consensus 84 ~KRkFIiADTPGHe-QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd-------y~ 155 (431)
T COG2895 84 EKRKFIIADTPGHE-QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD-------YS 155 (431)
T ss_pred ccceEEEecCCcHH-HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccc-------cC
Confidence 45589999998732 222222 2233468889998887777778888777777889998888899976543 23
Q ss_pred CchHH-------HHHHHhCCCeEEeccCch
Q 009721 358 RGSGS-------QVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 358 ~~~~~-------~~~~~~g~~~l~~IP~~~ 380 (527)
++..+ .+++.+|......||.+.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSA 185 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISA 185 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechh
Confidence 33333 455566777778888765
No 495
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=89.22 E-value=0.55 Score=43.08 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=28.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+.+.|. |..|+|||++...+...+.+.+.-++.++++..
T Consensus 25 ~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 25 RNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp --EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 455555 999999999999999999977544888888876
No 496
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=89.00 E-value=1.3 Score=47.74 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=38.7
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS 222 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg 222 (527)
|-|.|++| --|.||=.+|+.++..|..+|++|..+-.||+-+--+-.+.
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~Gtms 51 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMS 51 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCC
Confidence 44555543 57889999999999999999999999999998765444333
No 497
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=89.00 E-value=0.56 Score=44.34 Aligned_cols=33 Identities=39% Similarity=0.284 Sum_probs=25.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|++|+++ |.-|+||||++..|+. .|. .+||+|-
T Consensus 1 m~~igit-G~igsGKst~~~~l~~----~g~--~vid~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS----EGF--LIVDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH----CCC--eEEeCcH
Confidence 4578888 8889999999988873 576 4689984
No 498
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=88.99 E-value=17 Score=33.34 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=36.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHH----HcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF----SKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l----~~~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+--....+....+..+|.+++|+..... ++..+...+..+ ...+.+ +-+|+|+++.
T Consensus 50 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 50 KGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred CceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 456788999975321111111113457888888776543 444444433333 223455 5677899763
No 499
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=88.97 E-value=6.8 Score=41.10 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=35.3
Q ss_pred CEEEEeCCCCCCh-------hhhhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCEEEEEEeccc
Q 009721 282 DYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMCH 345 (527)
Q Consensus 282 D~IIID~pp~~~~-------~~~~~~~~~a~d~viiV~~p~----~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~ 345 (527)
.++++|+|+-... ....+..+..++.+++|+... .........+++.+..+ +.+ .-+|+|+++
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiD 286 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKID 286 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCc
Confidence 4888899773211 111122345678888887654 22344445555555543 344 457789976
Q ss_pred c
Q 009721 346 F 346 (527)
Q Consensus 346 ~ 346 (527)
.
T Consensus 287 l 287 (390)
T PRK12298 287 L 287 (390)
T ss_pred c
Confidence 4
No 500
>PRK13949 shikimate kinase; Provisional
Probab=88.90 E-value=0.33 Score=44.60 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=25.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.|.++ |-.|+||||++..||..|. . -.+|+|.
T Consensus 2 ~~I~li-G~~GsGKstl~~~La~~l~---~--~~id~D~ 34 (169)
T PRK13949 2 ARIFLV-GYMGAGKTTLGKALARELG---L--SFIDLDF 34 (169)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHcC---C--CeecccH
Confidence 456777 7899999999999988773 2 4667773
Done!