Query 009721
Match_columns 527
No_of_seqs 616 out of 3488
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 11:32:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fwy_A Light-independent proto 100.0 2.4E-32 8.4E-37 275.1 21.6 232 171-416 46-294 (314)
2 1g3q_A MIND ATPase, cell divis 100.0 5.9E-32 2E-36 261.8 19.2 229 172-415 1-236 (237)
3 3ea0_A ATPase, para family; al 100.0 2.8E-32 9.7E-37 265.3 14.9 228 171-414 2-244 (245)
4 3q9l_A Septum site-determining 100.0 1.2E-31 4.2E-36 263.2 15.8 230 172-414 1-248 (260)
5 2ph1_A Nucleotide-binding prot 100.0 1.1E-30 3.7E-35 257.4 21.0 226 167-394 12-244 (262)
6 1hyq_A MIND, cell division inh 100.0 4E-31 1.4E-35 260.2 15.0 228 172-415 1-235 (263)
7 1wcv_1 SOJ, segregation protei 100.0 2.8E-31 9.6E-36 260.8 12.5 231 171-418 4-248 (257)
8 4dzz_A Plasmid partitioning pr 100.0 3.6E-30 1.2E-34 243.6 16.8 199 173-416 1-205 (206)
9 3end_A Light-independent proto 100.0 1.4E-29 4.9E-34 255.1 20.6 229 170-415 38-286 (307)
10 1cp2_A CP2, nitrogenase iron p 100.0 3.3E-30 1.1E-34 254.5 15.3 232 173-416 1-248 (269)
11 3k9g_A PF-32 protein; ssgcid, 100.0 7.6E-30 2.6E-34 251.8 17.6 230 169-415 23-266 (267)
12 3kjh_A CO dehydrogenase/acetyl 100.0 1.1E-29 3.9E-34 247.4 17.3 224 175-416 2-253 (254)
13 2afh_E Nitrogenase iron protei 100.0 6.2E-30 2.1E-34 255.5 15.8 232 173-415 2-250 (289)
14 2oze_A ORF delta'; para, walke 100.0 6.3E-29 2.2E-33 249.2 14.3 239 171-420 32-294 (298)
15 3ez2_A Plasmid partition prote 100.0 1.4E-29 4.7E-34 264.6 9.7 242 170-420 105-396 (398)
16 3pg5_A Uncharacterized protein 100.0 1.3E-28 4.3E-33 253.7 16.4 244 173-418 1-351 (361)
17 3ez9_A Para; DNA binding, wing 100.0 3.8E-29 1.3E-33 261.6 11.8 242 170-420 108-399 (403)
18 3cwq_A Para family chromosome 99.9 5.4E-28 1.9E-32 230.0 12.1 197 174-419 1-202 (209)
19 2xj4_A MIPZ; replication, cell 99.9 3.6E-28 1.2E-32 242.5 4.1 224 172-413 3-265 (286)
20 3luu_A Uncharacterized protein 99.9 3E-26 1E-30 191.0 8.5 93 422-517 7-100 (101)
21 3la6_A Tyrosine-protein kinase 99.9 2.1E-24 7.3E-29 214.7 16.2 172 171-348 90-268 (286)
22 3bfv_A CAPA1, CAPB2, membrane 99.9 6E-24 2.1E-28 210.0 13.2 171 171-347 80-257 (271)
23 3cio_A ETK, tyrosine-protein k 99.9 2.2E-23 7.6E-28 208.8 14.1 171 172-348 103-280 (299)
24 3ug7_A Arsenical pump-driving 99.9 3.3E-23 1.1E-27 212.2 13.7 201 171-380 23-316 (349)
25 3zq6_A Putative arsenical pump 99.9 8.4E-24 2.9E-28 214.5 8.9 206 173-380 13-301 (324)
26 2l6n_A Uncharacterized protein 99.9 1.5E-23 5E-28 181.7 8.9 90 423-517 10-100 (132)
27 3fkq_A NTRC-like two-domain pr 99.9 6.5E-24 2.2E-28 219.5 7.4 196 170-381 140-352 (373)
28 2l6p_A PHAC1, PHAC2 and PHAD g 99.9 3.9E-23 1.3E-27 177.6 9.4 89 423-517 4-93 (124)
29 2woj_A ATPase GET3; tail-ancho 99.9 2.5E-23 8.4E-28 213.2 9.0 226 171-413 15-335 (354)
30 3iqw_A Tail-anchored protein t 99.9 8.2E-22 2.8E-26 199.9 15.7 201 171-379 13-303 (334)
31 2woo_A ATPase GET3; tail-ancho 99.9 1.7E-21 5.8E-26 197.8 12.6 206 172-379 17-300 (329)
32 3io3_A DEHA2D07832P; chaperone 99.8 3.3E-21 1.1E-25 196.4 9.1 205 171-380 15-313 (348)
33 3igf_A ALL4481 protein; two-do 99.8 6.1E-20 2.1E-24 188.3 16.1 266 174-503 2-370 (374)
34 1byi_A Dethiobiotin synthase; 99.8 4.2E-20 1.4E-24 176.8 13.4 196 174-381 2-208 (224)
35 3o2g_A Gamma-butyrobetaine dio 99.8 5.8E-19 2E-23 182.7 7.3 87 427-515 9-95 (388)
36 1ihu_A Arsenical pump-driving 99.7 2.3E-18 7.8E-23 188.5 7.4 196 175-379 9-278 (589)
37 1ihu_A Arsenical pump-driving 99.7 2.9E-18 1E-22 187.6 7.1 205 171-380 324-569 (589)
38 2xxa_A Signal recognition part 99.7 2.1E-18 7.2E-23 180.6 2.3 243 73-374 20-272 (433)
39 1uwd_A Hypothetical protein TM 99.6 6E-16 2.1E-20 129.4 10.3 84 74-158 5-88 (103)
40 3lno_A Putative uncharacterize 99.6 2E-16 6.9E-21 133.2 7.0 85 73-158 6-91 (108)
41 3cq1_A Putative uncharacterize 99.6 1.4E-15 4.7E-20 127.2 9.3 82 75-158 6-87 (103)
42 1j8m_F SRP54, signal recogniti 99.6 8.7E-15 3E-19 145.9 12.2 242 73-374 18-271 (297)
43 2ffh_A Protein (FFH); SRP54, s 99.5 6.2E-16 2.1E-20 160.8 1.5 241 73-374 20-269 (425)
44 1zu4_A FTSY; GTPase, signal re 99.5 4.3E-14 1.5E-18 142.3 13.4 171 172-374 104-286 (320)
45 1ls1_A Signal recognition part 99.5 6.5E-14 2.2E-18 139.6 12.1 167 172-374 97-269 (295)
46 3dm5_A SRP54, signal recogniti 99.5 6.3E-15 2.1E-19 153.4 2.7 242 73-374 21-271 (443)
47 2j37_W Signal recognition part 99.4 3.1E-14 1.1E-18 151.1 3.6 242 73-373 21-271 (504)
48 3of5_A Dethiobiotin synthetase 99.4 2.2E-13 7.5E-18 130.6 9.0 194 172-377 3-206 (228)
49 3kl4_A SRP54, signal recogniti 99.4 6.4E-14 2.2E-18 145.9 4.3 243 73-374 17-270 (433)
50 2v3c_C SRP54, signal recogniti 99.4 4.1E-12 1.4E-16 132.9 16.9 165 173-374 99-270 (432)
51 1yrb_A ATP(GTP)binding protein 99.4 4.5E-13 1.6E-17 130.8 6.8 47 171-218 11-57 (262)
52 3fgn_A Dethiobiotin synthetase 99.3 1.5E-11 5E-16 119.3 12.6 195 170-380 23-225 (251)
53 1vma_A Cell division protein F 99.3 4.2E-11 1.4E-15 119.6 15.0 168 172-375 103-282 (306)
54 3qxc_A Dethiobiotin synthetase 99.2 8.9E-11 3E-15 113.1 14.7 211 166-388 14-240 (242)
55 3ux2_A MIP18 family protein FA 99.2 4.1E-12 1.4E-16 108.2 2.9 76 76-151 9-90 (130)
56 2px0_A Flagellar biosynthesis 99.0 4.4E-10 1.5E-14 111.8 9.9 160 173-374 105-271 (296)
57 3p32_A Probable GTPase RV1496/ 98.8 1.1E-08 3.9E-13 104.4 10.5 150 173-346 79-229 (355)
58 2r8r_A Sensor protein; KDPD, P 98.7 1.8E-08 6.2E-13 95.1 6.9 45 173-217 5-49 (228)
59 3e70_C DPA, signal recognition 98.6 2.5E-08 8.5E-13 100.5 6.6 249 72-375 44-301 (328)
60 2yhs_A FTSY, cell division pro 98.4 6E-07 2E-11 94.3 10.9 167 172-374 292-470 (503)
61 2p67_A LAO/AO transport system 98.3 3.5E-06 1.2E-10 85.4 13.4 126 172-316 55-181 (341)
62 1rj9_A FTSY, signal recognitio 98.0 9.7E-05 3.3E-09 73.3 15.9 167 172-375 101-280 (304)
63 3pzx_A Formate--tetrahydrofola 97.9 8.5E-06 2.9E-10 83.8 5.0 52 171-225 55-109 (557)
64 4a0g_A Adenosylmethionine-8-am 97.9 6.3E-05 2.2E-09 84.8 12.6 88 280-380 201-298 (831)
65 2obn_A Hypothetical protein; s 97.9 7E-05 2.4E-09 75.2 11.1 166 173-378 152-337 (349)
66 2og2_A Putative signal recogni 97.8 0.00022 7.4E-09 72.4 14.3 41 173-214 157-197 (359)
67 3b9q_A Chloroplast SRP recepto 97.7 0.00045 1.5E-08 68.4 13.8 41 173-214 100-140 (302)
68 2rdo_7 EF-G, elongation factor 97.6 0.00025 8.4E-09 78.6 12.3 93 279-378 80-173 (704)
69 1g5t_A COB(I)alamin adenosyltr 97.5 0.00037 1.3E-08 64.2 9.0 36 176-212 31-66 (196)
70 2h5e_A Peptide chain release f 97.4 0.00062 2.1E-08 72.8 11.5 89 278-373 79-167 (529)
71 1u94_A RECA protein, recombina 97.3 0.00033 1.1E-08 71.1 7.9 38 174-212 64-101 (356)
72 1xp8_A RECA protein, recombina 97.2 0.00084 2.9E-08 68.3 8.5 38 174-212 75-112 (366)
73 1xjc_A MOBB protein homolog; s 97.1 0.00059 2E-08 61.5 6.1 42 172-214 3-44 (169)
74 2www_A Methylmalonic aciduria 97.1 0.0044 1.5E-07 62.6 12.8 43 173-216 74-116 (349)
75 3con_A GTPase NRAS; structural 96.9 0.023 7.7E-07 51.1 14.7 87 279-371 67-158 (190)
76 1dar_A EF-G, elongation factor 96.8 0.0062 2.1E-07 67.2 12.3 87 278-371 74-160 (691)
77 2zr9_A Protein RECA, recombina 96.8 0.0021 7.1E-08 65.0 7.5 39 173-212 61-99 (349)
78 2c78_A Elongation factor TU-A; 96.8 0.0073 2.5E-07 62.2 11.6 69 279-347 73-141 (405)
79 2qm8_A GTPase/ATPase; G protei 96.7 0.011 3.7E-07 59.4 12.1 42 172-214 54-95 (337)
80 3vqt_A RF-3, peptide chain rel 96.7 0.013 4.6E-07 62.7 13.0 90 277-373 96-185 (548)
81 2elf_A Protein translation elo 96.6 0.0084 2.9E-07 61.0 10.6 67 279-346 58-125 (370)
82 2xex_A Elongation factor G; GT 96.6 0.013 4.4E-07 64.7 12.8 87 278-371 72-158 (693)
83 2gf9_A RAS-related protein RAB 96.6 0.039 1.3E-06 49.6 14.1 88 279-370 69-159 (189)
84 3iev_A GTP-binding protein ERA 96.6 0.016 5.3E-07 57.4 11.9 85 280-369 58-153 (308)
85 3tr5_A RF-3, peptide chain rel 96.5 0.0013 4.5E-08 70.2 4.1 88 278-372 79-166 (528)
86 2yvu_A Probable adenylyl-sulfa 96.5 0.003 1E-07 57.4 5.6 40 173-213 13-52 (186)
87 2b8t_A Thymidine kinase; deoxy 96.4 0.011 3.8E-07 55.6 9.3 34 176-209 14-47 (223)
88 3hr8_A Protein RECA; alpha and 96.4 0.0057 2E-07 61.8 7.7 39 173-212 61-99 (356)
89 2ce2_X GTPase HRAS; signaling 96.4 0.059 2E-06 46.6 13.6 87 279-371 49-140 (166)
90 1d2e_A Elongation factor TU (E 96.3 0.011 3.6E-07 60.8 9.3 69 279-347 64-132 (397)
91 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0038 1.3E-07 60.2 5.2 40 173-213 4-43 (260)
92 3clv_A RAB5 protein, putative; 96.2 0.18 6.2E-06 45.2 16.4 65 281-345 93-158 (208)
93 1np6_A Molybdopterin-guanine d 96.2 0.0076 2.6E-07 54.5 6.4 42 172-214 5-46 (174)
94 3oes_A GTPase rhebl1; small GT 96.2 0.15 5.1E-06 46.3 15.4 87 279-370 70-161 (201)
95 2g0t_A Conserved hypothetical 96.1 0.028 9.5E-07 56.4 10.9 137 173-343 169-323 (350)
96 3iby_A Ferrous iron transport 96.1 0.028 9.7E-07 53.9 10.7 89 279-375 46-146 (256)
97 2efe_B Small GTP-binding prote 96.1 0.07 2.4E-06 47.2 12.5 87 280-370 60-149 (181)
98 2a9k_A RAS-related protein RAL 96.1 0.063 2.1E-06 47.7 12.2 67 280-347 65-136 (187)
99 1z2a_A RAS-related protein RAB 96.0 0.031 1.1E-06 48.8 9.8 86 280-370 53-141 (168)
100 3t1o_A Gliding protein MGLA; G 96.0 0.11 3.9E-06 46.4 13.8 68 279-347 72-148 (198)
101 3dz8_A RAS-related protein RAB 96.0 0.031 1E-06 50.5 9.7 87 279-370 70-160 (191)
102 1nks_A Adenylate kinase; therm 96.0 0.0057 2E-07 55.3 4.7 38 173-211 1-38 (194)
103 1wf3_A GTP-binding protein; GT 95.9 0.037 1.3E-06 54.5 10.7 67 279-346 53-129 (301)
104 1upt_A ARL1, ADP-ribosylation 95.9 0.22 7.5E-06 43.3 14.9 67 279-346 49-120 (171)
105 2wsm_A Hydrogenase expression/ 95.9 0.0074 2.5E-07 56.1 5.3 39 173-213 30-68 (221)
106 3j25_A Tetracycline resistance 95.9 0.013 4.4E-07 64.0 7.9 88 278-372 64-151 (638)
107 1kao_A RAP2A; GTP-binding prot 95.9 0.34 1.2E-05 41.7 15.9 67 280-347 50-121 (167)
108 4bas_A ADP-ribosylation factor 95.9 0.14 4.8E-06 46.0 13.7 68 279-347 61-140 (199)
109 2hxs_A RAB-26, RAS-related pro 95.9 0.15 5E-06 44.9 13.6 87 280-370 55-147 (178)
110 2nzj_A GTP-binding protein REM 95.8 0.11 3.7E-06 45.6 12.5 67 280-347 51-124 (175)
111 3bc1_A RAS-related protein RAB 95.8 0.29 1E-05 43.4 15.7 87 280-371 69-160 (195)
112 3t5g_A GTP-binding protein RHE 95.8 0.15 5.2E-06 45.1 13.6 86 280-370 53-143 (181)
113 2g6b_A RAS-related protein RAB 95.8 0.12 4E-06 45.6 12.8 87 280-371 59-149 (180)
114 3luu_A Uncharacterized protein 95.8 0.0047 1.6E-07 50.5 3.0 36 482-517 7-43 (101)
115 2gco_A H9, RHO-related GTP-bin 95.7 0.17 5.8E-06 45.9 13.8 67 280-347 72-142 (201)
116 2dr3_A UPF0273 protein PH0284; 95.7 0.01 3.5E-07 55.9 5.6 39 174-213 24-62 (247)
117 1rz3_A Hypothetical protein rb 95.7 0.014 4.7E-07 53.8 6.0 41 173-214 22-62 (201)
118 1vco_A CTP synthetase; tetrame 95.7 0.029 1E-06 59.6 9.1 46 171-216 10-56 (550)
119 2bcg_Y Protein YP2, GTP-bindin 95.6 0.12 4E-06 47.1 12.2 87 280-370 56-145 (206)
120 1g16_A RAS-related protein SEC 95.6 0.1 3.4E-06 45.5 11.4 86 280-371 51-140 (170)
121 2fg5_A RAB-22B, RAS-related pr 95.6 0.085 2.9E-06 47.5 11.1 69 279-347 70-141 (192)
122 1z0j_A RAB-22, RAS-related pro 95.6 0.072 2.4E-06 46.5 10.2 68 280-347 54-124 (170)
123 2dyk_A GTP-binding protein; GT 95.6 0.067 2.3E-06 46.2 9.9 66 280-346 48-120 (161)
124 3tkl_A RAS-related protein RAB 95.6 0.2 6.8E-06 44.9 13.4 87 280-371 64-154 (196)
125 1z08_A RAS-related protein RAB 95.5 0.13 4.3E-06 44.9 11.7 87 279-370 53-143 (170)
126 1r8s_A ADP-ribosylation factor 95.5 0.46 1.6E-05 40.9 15.3 68 279-346 42-113 (164)
127 1zbd_A Rabphilin-3A; G protein 95.5 0.23 7.7E-06 44.9 13.7 86 280-370 56-145 (203)
128 1ky3_A GTP-binding protein YPT 95.5 0.47 1.6E-05 41.6 15.5 67 279-346 56-130 (182)
129 3io5_A Recombination and repai 95.5 0.019 6.6E-07 56.7 6.6 36 177-212 31-68 (333)
130 2lkc_A Translation initiation 95.5 0.078 2.7E-06 46.7 10.1 67 279-346 53-119 (178)
131 2a5j_A RAS-related protein RAB 95.4 0.24 8.1E-06 44.4 13.4 86 280-370 69-158 (191)
132 2cvh_A DNA repair and recombin 95.4 0.015 5.2E-07 53.7 5.2 36 174-213 21-56 (220)
133 2h57_A ADP-ribosylation factor 95.4 0.066 2.3E-06 48.1 9.5 68 279-347 65-139 (190)
134 2ew1_A RAS-related protein RAB 95.4 0.28 9.6E-06 44.7 13.9 68 280-347 74-144 (201)
135 1z0f_A RAB14, member RAS oncog 95.3 0.11 3.8E-06 45.6 10.7 86 280-370 63-152 (179)
136 3bh0_A DNAB-like replicative h 95.3 0.015 5.2E-07 57.7 5.3 38 174-212 69-106 (315)
137 2erx_A GTP-binding protein DI- 95.3 0.11 3.7E-06 45.3 10.4 68 279-347 49-122 (172)
138 1ega_A Protein (GTP-binding pr 95.3 0.087 3E-06 51.7 10.5 67 279-347 54-129 (301)
139 3lvq_E ARF-GAP with SH3 domain 95.2 0.24 8.1E-06 52.2 14.5 124 279-426 364-492 (497)
140 1s1m_A CTP synthase; CTP synth 95.2 0.046 1.6E-06 58.0 8.8 45 173-217 3-48 (545)
141 1r2q_A RAS-related protein RAB 95.2 0.097 3.3E-06 45.5 9.6 69 279-347 53-124 (170)
142 4dsu_A GTPase KRAS, isoform 2B 95.2 0.38 1.3E-05 42.5 13.8 86 280-371 51-141 (189)
143 2h17_A ADP-ribosylation factor 95.2 0.17 5.7E-06 45.0 11.3 68 279-346 63-134 (181)
144 3cph_A RAS-related protein SEC 95.1 0.24 8.3E-06 45.0 12.7 86 280-371 68-157 (213)
145 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.02 6.9E-07 53.2 5.3 38 174-212 24-61 (235)
146 2f1r_A Molybdopterin-guanine d 95.1 0.016 5.5E-07 52.1 4.3 41 172-213 1-41 (171)
147 1uj2_A Uridine-cytidine kinase 95.1 0.015 5E-07 55.6 4.2 42 172-214 21-67 (252)
148 2hf9_A Probable hydrogenase ni 95.1 0.02 6.9E-07 53.3 5.1 39 173-213 38-76 (226)
149 2fv8_A H6, RHO-related GTP-bin 95.1 0.13 4.3E-06 47.1 10.5 67 280-347 72-142 (207)
150 2il1_A RAB12; G-protein, GDP, 95.1 0.13 4.5E-06 46.3 10.5 68 280-347 74-144 (192)
151 4a1f_A DNAB helicase, replicat 95.0 0.021 7.3E-07 57.1 5.3 37 175-212 48-84 (338)
152 1a7j_A Phosphoribulokinase; tr 95.0 0.012 4.2E-07 57.7 3.4 41 173-214 5-45 (290)
153 1u8z_A RAS-related protein RAL 95.0 0.24 8.2E-06 42.7 11.7 67 280-347 51-122 (168)
154 3bgw_A DNAB-like replicative h 95.0 0.019 6.4E-07 59.9 5.0 38 176-213 199-236 (444)
155 3kkq_A RAS-related protein M-R 95.0 0.16 5.6E-06 45.0 10.6 87 280-371 65-156 (183)
156 1fzq_A ADP-ribosylation factor 94.9 0.35 1.2E-05 43.0 12.8 68 279-347 58-130 (181)
157 2j9r_A Thymidine kinase; TK1, 94.9 0.062 2.1E-06 50.0 7.8 36 173-209 28-63 (214)
158 2dy1_A Elongation factor G; tr 94.9 0.089 3E-06 57.7 10.4 83 279-369 72-154 (665)
159 3pqc_A Probable GTP-binding pr 94.9 0.12 4.2E-06 46.1 9.8 42 305-347 105-146 (195)
160 1zj6_A ADP-ribosylation factor 94.9 0.41 1.4E-05 42.6 13.3 68 279-346 58-129 (187)
161 2bov_A RAla, RAS-related prote 94.9 0.42 1.4E-05 43.0 13.5 67 280-347 61-132 (206)
162 1ek0_A Protein (GTP-binding pr 94.9 0.18 6.3E-06 43.7 10.7 90 280-370 51-143 (170)
163 3i8s_A Ferrous iron transport 94.9 0.23 8E-06 47.9 12.3 89 279-375 48-148 (274)
164 2pez_A Bifunctional 3'-phospho 94.9 0.03 1E-06 50.2 5.4 40 173-213 5-44 (179)
165 3q72_A GTP-binding protein RAD 94.9 0.21 7.1E-06 43.3 11.0 86 280-370 48-138 (166)
166 1zd9_A ADP-ribosylation factor 94.9 0.19 6.4E-06 45.0 10.9 68 279-347 65-137 (188)
167 1ksh_A ARF-like protein 2; sma 94.8 0.5 1.7E-05 41.8 13.6 69 279-347 60-132 (186)
168 1jny_A EF-1-alpha, elongation 94.8 0.14 4.8E-06 53.1 11.0 70 278-347 81-157 (435)
169 3p26_A Elongation factor 1 alp 94.8 0.17 6E-06 53.1 11.8 69 279-347 109-184 (483)
170 2bme_A RAB4A, RAS-related prot 94.8 0.31 1.1E-05 43.1 12.1 67 280-347 58-128 (186)
171 4fn5_A EF-G 1, elongation fact 94.8 0.28 9.5E-06 54.2 13.9 88 279-373 83-170 (709)
172 2oil_A CATX-8, RAS-related pro 94.8 0.61 2.1E-05 41.6 14.1 69 279-347 72-143 (193)
173 3j2k_7 ERF3, eukaryotic polype 94.7 0.14 4.8E-06 53.1 10.8 68 279-346 93-167 (439)
174 4dcu_A GTP-binding protein ENG 94.7 0.049 1.7E-06 56.9 7.3 67 279-346 69-143 (456)
175 3uie_A Adenylyl-sulfate kinase 94.7 0.035 1.2E-06 50.8 5.5 42 171-213 23-64 (200)
176 3lxx_A GTPase IMAP family memb 94.6 0.26 8.9E-06 46.2 11.7 21 174-195 30-50 (239)
177 1m2o_B GTP-binding protein SAR 94.6 0.33 1.1E-05 43.6 12.0 82 279-370 65-151 (190)
178 2x77_A ADP-ribosylation factor 94.6 0.48 1.6E-05 42.1 13.0 68 279-346 64-135 (189)
179 2fn4_A P23, RAS-related protei 94.6 0.3 1E-05 42.8 11.5 67 280-347 56-127 (181)
180 2ywe_A GTP-binding protein LEP 94.6 0.17 5.7E-06 54.6 11.3 84 280-370 72-155 (600)
181 2w58_A DNAI, primosome compone 94.6 0.035 1.2E-06 50.7 5.2 36 175-211 56-91 (202)
182 1m7g_A Adenylylsulfate kinase; 94.6 0.028 9.6E-07 52.0 4.6 40 172-212 24-64 (211)
183 1moz_A ARL1, ADP-ribosylation 94.5 0.5 1.7E-05 41.6 12.7 68 279-346 60-131 (183)
184 3ec2_A DNA replication protein 94.5 0.027 9.1E-07 50.6 4.1 36 174-210 39-75 (180)
185 1x3s_A RAS-related protein RAB 94.5 0.2 7E-06 44.7 10.1 68 279-346 62-133 (195)
186 2hup_A RAS-related protein RAB 94.5 0.86 2.9E-05 41.2 14.5 86 280-370 77-166 (201)
187 1kht_A Adenylate kinase; phosp 94.5 0.023 7.9E-07 51.2 3.6 37 174-211 4-40 (192)
188 2o52_A RAS-related protein RAB 94.4 0.29 1E-05 44.3 11.0 67 280-347 73-143 (200)
189 1z06_A RAS-related protein RAB 94.3 0.28 9.5E-06 43.8 10.7 87 280-371 68-160 (189)
190 2xtp_A GTPase IMAP family memb 94.3 0.1 3.5E-06 49.7 8.0 21 174-195 23-43 (260)
191 2pbr_A DTMP kinase, thymidylat 94.3 0.052 1.8E-06 48.9 5.7 34 175-209 2-35 (195)
192 3k53_A Ferrous iron transport 94.2 0.23 8E-06 47.7 10.5 89 279-375 48-145 (271)
193 3cpj_B GTP-binding protein YPT 94.2 0.45 1.5E-05 43.9 12.2 67 280-347 61-131 (223)
194 3t61_A Gluconokinase; PSI-biol 94.2 0.026 8.9E-07 51.7 3.5 38 169-212 14-51 (202)
195 2y8e_A RAB-protein 6, GH09086P 94.2 0.26 9E-06 43.1 10.0 67 280-347 62-132 (179)
196 3o47_A ADP-ribosylation factor 94.1 0.75 2.6E-05 45.5 14.3 82 279-370 207-293 (329)
197 1e6c_A Shikimate kinase; phosp 94.1 0.027 9.2E-07 50.0 3.3 35 172-212 1-35 (173)
198 2zts_A Putative uncharacterize 94.1 0.045 1.6E-06 51.5 5.1 37 176-212 32-69 (251)
199 1qhx_A CPT, protein (chloramph 94.1 0.029 1E-06 50.0 3.5 34 176-212 5-38 (178)
200 1cr0_A DNA primase/helicase; R 94.1 0.057 2E-06 52.7 5.8 38 174-212 36-74 (296)
201 2gks_A Bifunctional SAT/APS ki 94.1 0.045 1.5E-06 58.5 5.4 40 172-212 371-410 (546)
202 3sjy_A Translation initiation 94.0 0.17 5.7E-06 51.9 9.5 66 281-346 75-141 (403)
203 3a1s_A Iron(II) transport prot 94.0 0.65 2.2E-05 44.3 13.1 89 279-375 50-146 (258)
204 2b6h_A ADP-ribosylation factor 94.0 0.65 2.2E-05 41.7 12.5 83 279-370 71-157 (192)
205 2gf0_A GTP-binding protein DI- 94.0 0.28 9.7E-06 43.9 10.0 68 279-347 54-127 (199)
206 3tw8_B RAS-related protein RAB 94.0 0.25 8.5E-06 43.4 9.4 88 280-371 57-146 (181)
207 1f6b_A SAR1; gtpases, N-termin 93.9 0.36 1.2E-05 43.7 10.7 67 279-346 67-138 (198)
208 3c5c_A RAS-like protein 12; GD 93.9 0.5 1.7E-05 42.2 11.5 85 280-370 68-159 (187)
209 2z0h_A DTMP kinase, thymidylat 93.9 0.07 2.4E-06 48.2 5.7 34 175-209 2-35 (197)
210 2q6t_A DNAB replication FORK h 93.9 0.055 1.9E-06 56.3 5.5 38 174-212 201-239 (444)
211 2p5s_A RAS and EF-hand domain 93.9 0.35 1.2E-05 43.7 10.4 66 280-346 76-145 (199)
212 1via_A Shikimate kinase; struc 93.8 0.027 9.1E-07 50.3 2.7 35 172-212 3-37 (175)
213 4dhe_A Probable GTP-binding pr 93.8 0.24 8.2E-06 45.5 9.4 66 279-346 77-156 (223)
214 2hjg_A GTP-binding protein ENG 93.8 0.093 3.2E-06 54.4 7.1 67 279-347 49-124 (436)
215 3lxw_A GTPase IMAP family memb 93.8 0.55 1.9E-05 44.4 12.0 67 279-347 68-152 (247)
216 1q57_A DNA primase/helicase; d 93.7 0.041 1.4E-06 58.2 4.3 38 174-212 243-281 (503)
217 2atv_A RERG, RAS-like estrogen 93.7 0.46 1.6E-05 42.7 10.9 66 280-347 75-145 (196)
218 2r6a_A DNAB helicase, replicat 93.7 0.067 2.3E-06 55.8 5.7 38 174-212 204-242 (454)
219 3cmw_A Protein RECA, recombina 93.6 0.084 2.9E-06 63.3 7.1 41 173-214 383-423 (1706)
220 2c5m_A CTP synthase; cytidine 93.6 0.23 7.9E-06 46.8 8.6 46 172-217 22-68 (294)
221 3bos_A Putative DNA replicatio 93.6 0.078 2.7E-06 49.3 5.6 38 174-212 53-90 (242)
222 2orw_A Thymidine kinase; TMTK, 93.6 0.063 2.1E-06 48.7 4.7 36 174-210 4-39 (184)
223 1mky_A Probable GTP-binding pr 93.6 0.38 1.3E-05 49.8 11.3 65 279-345 47-121 (439)
224 3q85_A GTP-binding protein REM 93.6 0.49 1.7E-05 41.0 10.5 86 280-370 50-141 (169)
225 2j69_A Bacterial dynamin-like 93.5 0.18 6.2E-06 55.5 9.1 65 281-347 174-243 (695)
226 3trf_A Shikimate kinase, SK; a 93.5 0.04 1.4E-06 49.5 3.2 35 172-212 4-38 (185)
227 2kjq_A DNAA-related protein; s 93.5 0.067 2.3E-06 46.7 4.6 38 173-211 36-73 (149)
228 2r2a_A Uncharacterized protein 93.4 0.046 1.6E-06 50.4 3.6 40 171-211 3-48 (199)
229 1xx6_A Thymidine kinase; NESG, 93.4 0.11 3.8E-06 47.4 6.1 36 173-209 8-43 (191)
230 2iyv_A Shikimate kinase, SK; t 93.4 0.028 9.4E-07 50.6 2.0 35 172-212 1-35 (184)
231 1ly1_A Polynucleotide kinase; 93.3 0.066 2.2E-06 47.6 4.4 35 173-212 2-36 (181)
232 1vg8_A RAS-related protein RAB 93.3 0.41 1.4E-05 43.2 9.9 68 279-347 55-130 (207)
233 3avx_A Elongation factor TS, e 93.3 0.16 5.6E-06 58.4 8.3 69 279-347 357-425 (1289)
234 1nn5_A Similar to deoxythymidy 93.3 0.1 3.5E-06 47.8 5.7 35 174-209 10-44 (215)
235 3cmw_A Protein RECA, recombina 93.2 0.1 3.6E-06 62.5 6.9 40 173-213 732-771 (1706)
236 3cb4_D GTP-binding protein LEP 93.1 0.21 7.1E-06 53.9 8.6 84 280-370 70-153 (599)
237 2ged_A SR-beta, signal recogni 93.1 0.36 1.2E-05 43.1 9.0 20 175-195 50-69 (193)
238 3llu_A RAS-related GTP-binding 93.0 1.2 4E-05 40.0 12.4 67 279-346 67-141 (196)
239 3cmu_A Protein RECA, recombina 92.9 0.12 4.3E-06 62.7 7.1 41 173-214 383-423 (2050)
240 2axn_A 6-phosphofructo-2-kinas 92.9 0.098 3.3E-06 55.6 5.6 40 172-212 34-73 (520)
241 3c8u_A Fructokinase; YP_612366 92.9 0.14 4.8E-06 47.0 6.1 40 173-213 22-61 (208)
242 2wwf_A Thymidilate kinase, put 92.9 0.12 4.2E-06 47.2 5.7 36 173-209 10-45 (212)
243 4dkx_A RAS-related protein RAB 92.9 0.87 3E-05 42.1 11.5 88 279-371 60-151 (216)
244 1n0u_A EF-2, elongation factor 92.8 0.27 9.1E-06 55.4 9.3 68 279-347 96-163 (842)
245 1wb1_A Translation elongation 92.8 0.23 7.7E-06 52.2 8.2 67 279-346 71-137 (482)
246 3ihw_A Centg3; RAS, centaurin, 92.8 3.5 0.00012 36.4 15.2 82 280-369 66-152 (184)
247 3q3j_B RHO-related GTP-binding 92.7 2 6.9E-05 39.2 13.8 68 279-347 73-144 (214)
248 1v5w_A DMC1, meiotic recombina 92.7 0.095 3.2E-06 52.5 4.9 39 173-212 122-166 (343)
249 1jjv_A Dephospho-COA kinase; P 92.6 0.074 2.5E-06 48.7 3.8 34 172-212 1-34 (206)
250 1kk1_A EIF2gamma; initiation o 92.6 0.31 1.1E-05 49.9 8.8 66 281-346 83-149 (410)
251 1zo1_I IF2, translation initia 92.6 0.31 1.1E-05 51.3 8.8 68 279-347 49-116 (501)
252 2qgz_A Helicase loader, putati 92.6 0.13 4.4E-06 50.8 5.5 37 174-211 153-190 (308)
253 1m8p_A Sulfate adenylyltransfe 92.5 0.1 3.5E-06 56.1 5.1 40 172-212 395-435 (573)
254 2z43_A DNA repair and recombin 92.5 0.076 2.6E-06 52.7 3.9 39 173-212 107-151 (324)
255 1nlf_A Regulatory protein REPA 92.5 0.12 4.2E-06 49.8 5.3 38 174-212 31-78 (279)
256 1g7s_A Translation initiation 92.5 0.87 3E-05 49.0 12.3 67 280-347 69-135 (594)
257 2if2_A Dephospho-COA kinase; a 92.4 0.059 2E-06 49.2 2.8 33 173-212 1-33 (204)
258 2atx_A Small GTP binding prote 92.4 2 6.9E-05 38.1 13.1 67 280-347 65-135 (194)
259 1wms_A RAB-9, RAB9, RAS-relate 92.4 1.7 5.7E-05 37.7 12.3 67 280-347 55-129 (177)
260 2ze6_A Isopentenyl transferase 92.3 0.098 3.3E-06 50.0 4.3 34 173-212 1-34 (253)
261 2plr_A DTMP kinase, probable t 92.3 0.13 4.4E-06 46.9 5.0 34 174-209 5-38 (213)
262 1c1y_A RAS-related protein RAP 92.3 2.1 7.3E-05 36.5 12.9 68 279-347 49-121 (167)
263 1qf9_A UMP/CMP kinase, protein 92.3 0.097 3.3E-06 46.9 4.1 35 171-211 4-38 (194)
264 3d3q_A TRNA delta(2)-isopenten 92.3 0.11 3.7E-06 51.9 4.6 34 174-213 8-41 (340)
265 1jwy_B Dynamin A GTPase domain 92.2 0.29 1E-05 47.8 7.8 68 279-347 129-211 (315)
266 1kag_A SKI, shikimate kinase I 92.2 0.057 2E-06 47.8 2.3 35 172-212 3-37 (173)
267 3tqc_A Pantothenate kinase; bi 92.2 0.15 5E-06 50.6 5.4 41 173-214 92-134 (321)
268 1n0w_A DNA repair protein RAD5 92.2 0.1 3.5E-06 48.8 4.1 38 174-212 25-68 (243)
269 3crm_A TRNA delta(2)-isopenten 92.1 0.11 3.7E-06 51.6 4.4 37 171-213 3-39 (323)
270 3reg_A RHO-like small GTPase; 92.1 1 3.6E-05 40.1 10.7 91 279-371 69-162 (194)
271 1ukz_A Uridylate kinase; trans 92.0 0.1 3.5E-06 47.6 3.9 36 170-211 12-47 (203)
272 1sq5_A Pantothenate kinase; P- 91.9 0.15 5E-06 50.2 5.2 41 173-214 80-122 (308)
273 1gtv_A TMK, thymidylate kinase 91.9 0.054 1.9E-06 49.8 1.9 35 175-210 2-36 (214)
274 3cmu_A Protein RECA, recombina 91.9 0.21 7E-06 60.8 7.1 39 173-212 1427-1465(2050)
275 1jbk_A CLPB protein; beta barr 91.9 0.18 6.2E-06 44.6 5.3 36 174-210 44-86 (195)
276 2v54_A DTMP kinase, thymidylat 91.8 0.11 3.7E-06 47.3 3.8 35 173-210 4-38 (204)
277 2rhm_A Putative kinase; P-loop 91.8 0.11 3.9E-06 46.6 3.9 33 173-211 5-37 (193)
278 1x6v_B Bifunctional 3'-phospho 91.7 0.14 4.9E-06 55.4 5.1 42 172-214 51-92 (630)
279 3mca_A HBS1, elongation factor 91.7 0.061 2.1E-06 58.1 2.2 69 279-347 253-328 (592)
280 3dpu_A RAB family protein; roc 91.6 0.45 1.5E-05 50.6 8.9 66 279-347 96-163 (535)
281 3t34_A Dynamin-related protein 91.6 1.3 4.4E-05 44.3 11.8 67 280-347 135-216 (360)
282 1uf9_A TT1252 protein; P-loop, 91.6 0.082 2.8E-06 48.0 2.7 35 171-212 6-40 (203)
283 3kb2_A SPBC2 prophage-derived 91.6 0.12 4.1E-06 45.4 3.7 33 174-212 2-34 (173)
284 4dcu_A GTP-binding protein ENG 91.6 0.65 2.2E-05 48.2 9.9 68 279-347 241-319 (456)
285 1m7b_A RND3/RHOE small GTP-bin 91.5 1.6 5.3E-05 38.6 11.2 68 279-347 53-124 (184)
286 2bwj_A Adenylate kinase 5; pho 91.5 0.089 3E-06 47.6 2.8 34 173-212 12-45 (199)
287 3vaa_A Shikimate kinase, SK; s 91.4 0.11 3.6E-06 47.5 3.3 34 173-212 25-58 (199)
288 3cbq_A GTP-binding protein REM 91.4 1.4 4.7E-05 39.6 10.8 67 280-347 71-143 (195)
289 1odf_A YGR205W, hypothetical 3 91.4 0.13 4.4E-06 50.3 3.9 40 173-213 31-73 (290)
290 1knq_A Gluconate kinase; ALFA/ 91.4 0.21 7E-06 44.3 5.0 34 173-212 8-41 (175)
291 3jvv_A Twitching mobility prot 91.3 1.4 4.9E-05 44.1 11.8 35 174-209 124-159 (356)
292 4hlc_A DTMP kinase, thymidylat 91.3 0.19 6.4E-06 46.4 4.8 36 172-209 1-36 (205)
293 3ld9_A DTMP kinase, thymidylat 91.3 0.2 6.8E-06 46.9 5.0 42 172-214 20-62 (223)
294 2cdn_A Adenylate kinase; phosp 91.2 0.15 5.2E-06 46.4 4.0 35 171-211 18-52 (201)
295 1svi_A GTP-binding protein YSX 91.2 0.86 2.9E-05 40.5 9.2 40 306-347 107-147 (195)
296 3izy_P Translation initiation 91.2 0.43 1.5E-05 50.7 8.0 67 280-347 51-117 (537)
297 1tev_A UMP-CMP kinase; ploop, 91.1 0.14 4.9E-06 45.9 3.8 32 174-211 4-35 (196)
298 3asz_A Uridine kinase; cytidin 91.1 0.2 6.8E-06 45.9 4.8 38 173-214 6-43 (211)
299 2qt1_A Nicotinamide riboside k 91.1 0.11 3.9E-06 47.5 3.1 37 172-213 20-56 (207)
300 2p5t_B PEZT; postsegregational 91.0 0.14 4.7E-06 48.8 3.7 38 173-214 32-69 (253)
301 3ake_A Cytidylate kinase; CMP 91.0 0.11 3.7E-06 47.4 2.8 34 173-212 2-35 (208)
302 1s0u_A EIF-2-gamma, translatio 90.8 0.89 3.1E-05 46.4 9.9 67 281-347 81-148 (408)
303 2ewv_A Twitching motility prot 90.8 1.7 5.8E-05 43.8 11.8 37 173-210 136-173 (372)
304 1g8f_A Sulfate adenylyltransfe 90.8 0.17 5.9E-06 53.4 4.5 39 173-212 395-435 (511)
305 2p65_A Hypothetical protein PF 90.7 0.2 7E-06 44.2 4.4 25 175-200 45-69 (187)
306 3lw7_A Adenylate kinase relate 90.6 0.14 4.8E-06 44.9 3.2 27 175-206 3-29 (179)
307 2g3y_A GTP-binding protein GEM 90.6 2 6.9E-05 39.4 11.2 67 280-347 86-158 (211)
308 4edh_A DTMP kinase, thymidylat 90.6 0.29 1E-05 45.4 5.4 36 173-209 6-41 (213)
309 2i1q_A DNA repair and recombin 90.4 0.16 5.5E-06 50.2 3.7 39 174-213 99-153 (322)
310 1gwn_A RHO-related GTP-binding 90.4 2.1 7.2E-05 38.8 11.1 69 279-347 74-145 (205)
311 3bwd_D RAC-like GTP-binding pr 90.3 0.78 2.7E-05 40.2 7.9 67 280-347 55-125 (182)
312 1nrj_B SR-beta, signal recogni 90.3 0.37 1.3E-05 44.1 5.9 22 174-196 13-34 (218)
313 1y63_A LMAJ004144AAA protein; 90.2 0.21 7.2E-06 44.9 4.0 34 174-212 11-44 (184)
314 2ehv_A Hypothetical protein PH 90.2 0.3 1E-05 45.8 5.2 39 173-212 30-69 (251)
315 2vhj_A Ntpase P4, P4; non- hyd 90.1 0.11 3.9E-06 51.3 2.2 34 174-211 124-157 (331)
316 2qpt_A EH domain-containing pr 90.1 0.36 1.2E-05 51.6 6.3 65 282-347 155-231 (550)
317 3def_A T7I23.11 protein; chlor 90.0 0.71 2.4E-05 43.9 7.9 20 175-195 38-57 (262)
318 1gvn_B Zeta; postsegregational 90.0 0.18 6.2E-06 49.1 3.6 37 175-214 34-70 (287)
319 2grj_A Dephospho-COA kinase; T 89.9 0.22 7.6E-06 45.4 3.9 34 174-213 13-46 (192)
320 1mh1_A RAC1; GTP-binding, GTPa 89.9 1 3.5E-05 39.5 8.3 67 280-347 52-122 (186)
321 2pt5_A Shikimate kinase, SK; a 89.9 0.15 5.1E-06 44.8 2.7 32 175-212 2-33 (168)
322 2f6r_A COA synthase, bifunctio 89.9 0.23 7.9E-06 48.1 4.3 35 171-212 73-107 (281)
323 4gzl_A RAS-related C3 botulinu 89.8 0.73 2.5E-05 41.8 7.4 68 279-347 76-147 (204)
324 3be4_A Adenylate kinase; malar 89.8 0.19 6.3E-06 46.6 3.3 33 173-211 5-37 (217)
325 2l6n_A Uncharacterized protein 89.7 0.2 6.9E-06 42.7 3.1 38 482-519 9-47 (132)
326 1zuh_A Shikimate kinase; alpha 89.6 0.23 7.9E-06 43.7 3.7 34 173-212 7-40 (168)
327 3e2i_A Thymidine kinase; Zn-bi 89.5 0.74 2.5E-05 42.7 7.1 37 173-210 28-64 (219)
328 3hjn_A DTMP kinase, thymidylat 89.4 0.43 1.5E-05 43.6 5.5 33 176-209 3-35 (197)
329 4eaq_A DTMP kinase, thymidylat 89.4 0.34 1.2E-05 45.4 4.9 35 172-208 25-59 (229)
330 4eun_A Thermoresistant glucoki 89.3 0.31 1.1E-05 44.3 4.5 34 173-212 29-62 (200)
331 1zun_B Sulfate adenylate trans 89.1 0.82 2.8E-05 47.1 8.0 69 279-347 102-170 (434)
332 2jeo_A Uridine-cytidine kinase 89.1 0.36 1.2E-05 45.5 4.9 39 173-212 25-68 (245)
333 1ak2_A Adenylate kinase isoenz 89.0 0.28 9.5E-06 45.9 4.0 35 171-211 14-48 (233)
334 1l8q_A Chromosomal replication 88.9 0.4 1.4E-05 47.2 5.2 36 175-211 39-74 (324)
335 3e1s_A Exodeoxyribonuclease V, 88.8 0.39 1.3E-05 51.6 5.4 33 176-208 206-238 (574)
336 3iij_A Coilin-interacting nucl 88.7 0.26 8.9E-06 43.9 3.4 32 174-211 12-43 (180)
337 1aky_A Adenylate kinase; ATP:A 88.7 0.3 1E-05 45.1 3.9 33 173-211 4-36 (220)
338 3gj0_A GTP-binding nuclear pro 88.6 0.86 2.9E-05 41.7 7.0 68 279-347 62-132 (221)
339 1zp6_A Hypothetical protein AT 88.6 0.3 1E-05 43.8 3.7 34 174-211 10-43 (191)
340 3v9p_A DTMP kinase, thymidylat 88.5 0.38 1.3E-05 45.1 4.5 35 174-209 26-64 (227)
341 2c95_A Adenylate kinase 1; tra 88.4 0.31 1E-05 43.8 3.7 33 173-211 9-41 (196)
342 3lv8_A DTMP kinase, thymidylat 88.4 0.44 1.5E-05 45.0 4.8 35 173-208 27-62 (236)
343 1ltq_A Polynucleotide kinase; 88.3 0.3 1E-05 47.5 3.8 35 173-212 2-36 (301)
344 3cm0_A Adenylate kinase; ATP-b 88.2 0.36 1.2E-05 43.1 3.9 33 173-211 4-36 (186)
345 2qby_B CDC6 homolog 3, cell di 88.2 0.39 1.3E-05 48.1 4.7 37 174-211 46-90 (384)
346 3a8t_A Adenylate isopentenyltr 88.1 1.4 4.7E-05 43.8 8.4 34 174-213 41-74 (339)
347 2a5y_B CED-4; apoptosis; HET: 88.0 0.3 1E-05 52.1 3.9 23 173-196 152-174 (549)
348 2hjg_A GTP-binding protein ENG 87.9 0.82 2.8E-05 47.2 7.0 44 302-347 255-299 (436)
349 2j0v_A RAC-like GTP-binding pr 87.8 4 0.00014 36.7 11.1 68 279-347 55-126 (212)
350 4fcw_A Chaperone protein CLPB; 87.8 0.56 1.9E-05 45.6 5.4 38 175-213 49-86 (311)
351 2vli_A Antibiotic resistance p 87.7 0.2 6.9E-06 44.5 2.0 30 173-206 5-34 (183)
352 4a74_A DNA repair and recombin 87.5 0.43 1.5E-05 43.9 4.2 39 173-212 25-69 (231)
353 1f60_A Elongation factor EEF1A 87.5 1.7 5.7E-05 45.2 9.1 69 279-347 83-158 (458)
354 3lda_A DNA repair protein RAD5 87.3 0.37 1.3E-05 49.3 3.9 39 173-212 178-222 (400)
355 4tmk_A Protein (thymidylate ki 87.2 0.57 2E-05 43.4 4.8 34 174-208 4-38 (213)
356 3exa_A TRNA delta(2)-isopenten 87.2 0.46 1.6E-05 46.8 4.3 33 175-212 4-36 (322)
357 3r7w_A Gtpase1, GTP-binding pr 87.2 1.1 3.7E-05 43.9 7.1 68 279-347 50-128 (307)
358 3t15_A Ribulose bisphosphate c 87.1 0.47 1.6E-05 46.2 4.4 33 174-210 37-69 (293)
359 1zak_A Adenylate kinase; ATP:A 87.0 0.34 1.2E-05 44.8 3.1 33 173-211 5-37 (222)
360 2qby_A CDC6 homolog 1, cell di 86.9 0.43 1.5E-05 47.6 4.1 38 174-212 46-86 (386)
361 1pzn_A RAD51, DNA repair and r 86.9 0.46 1.6E-05 47.6 4.2 39 173-212 131-175 (349)
362 2orv_A Thymidine kinase; TP4A 86.9 0.75 2.6E-05 43.1 5.4 40 171-211 17-56 (234)
363 1cke_A CK, MSSA, protein (cyti 86.8 0.46 1.6E-05 43.8 4.0 32 174-211 6-37 (227)
364 3n70_A Transport activator; si 86.8 0.3 1E-05 42.0 2.5 35 176-212 27-61 (145)
365 2jaq_A Deoxyguanosine kinase; 86.7 0.44 1.5E-05 43.0 3.7 24 175-199 2-25 (205)
366 1e4v_A Adenylate kinase; trans 86.6 0.39 1.3E-05 44.2 3.3 31 175-211 2-32 (214)
367 3upu_A ATP-dependent DNA helic 86.6 0.65 2.2E-05 48.3 5.4 34 176-209 47-81 (459)
368 3foz_A TRNA delta(2)-isopenten 86.5 0.82 2.8E-05 44.9 5.7 35 172-212 9-43 (316)
369 1zd8_A GTP:AMP phosphotransfer 86.5 0.33 1.1E-05 45.1 2.8 33 173-211 7-39 (227)
370 2bdt_A BH3686; alpha-beta prot 86.5 0.43 1.5E-05 42.8 3.4 35 172-211 1-35 (189)
371 4b3f_X DNA-binding protein smu 86.5 0.63 2.2E-05 50.7 5.4 35 176-210 207-241 (646)
372 3tlx_A Adenylate kinase 2; str 86.3 0.55 1.9E-05 44.3 4.3 33 173-211 29-61 (243)
373 3syl_A Protein CBBX; photosynt 86.2 0.74 2.5E-05 44.6 5.3 36 174-210 68-107 (309)
374 3fb4_A Adenylate kinase; psych 86.2 0.46 1.6E-05 43.5 3.6 31 175-211 2-32 (216)
375 3aez_A Pantothenate kinase; tr 86.2 0.87 3E-05 44.8 5.8 40 173-213 90-131 (312)
376 2chg_A Replication factor C sm 86.0 0.31 1.1E-05 44.2 2.3 34 176-210 41-74 (226)
377 2bbw_A Adenylate kinase 4, AK4 85.6 0.55 1.9E-05 44.2 3.9 25 173-198 27-51 (246)
378 1bif_A 6-phosphofructo-2-kinas 85.5 0.81 2.8E-05 47.7 5.4 39 173-212 39-77 (469)
379 3do6_A Formate--tetrahydrofola 85.4 0.58 2E-05 48.1 4.0 44 172-218 42-88 (543)
380 2xb4_A Adenylate kinase; ATP-b 85.0 0.54 1.8E-05 43.6 3.4 31 175-211 2-32 (223)
381 2v1u_A Cell division control p 85.0 0.55 1.9E-05 46.9 3.7 38 174-212 45-88 (387)
382 2fu5_C RAS-related protein RAB 84.8 7.8 0.00027 33.6 11.1 86 280-370 56-145 (183)
383 1fnn_A CDC6P, cell division co 84.7 0.93 3.2E-05 45.3 5.3 37 175-212 46-83 (389)
384 1vht_A Dephospho-COA kinase; s 84.7 0.87 3E-05 41.8 4.7 32 174-212 5-36 (218)
385 1w4r_A Thymidine kinase; type 84.5 1.3 4.4E-05 40.3 5.6 43 168-211 15-57 (195)
386 1tf7_A KAIC; homohexamer, hexa 84.4 0.92 3.1E-05 48.0 5.3 38 173-211 281-318 (525)
387 3ch4_B Pmkase, phosphomevalona 84.3 0.72 2.5E-05 42.3 3.8 27 171-198 9-35 (202)
388 3dl0_A Adenylate kinase; phosp 84.3 0.5 1.7E-05 43.3 2.8 31 175-211 2-32 (216)
389 3umf_A Adenylate kinase; rossm 84.1 0.82 2.8E-05 42.5 4.2 26 172-198 28-53 (217)
390 2z4s_A Chromosomal replication 83.9 0.78 2.7E-05 47.5 4.4 37 174-211 131-169 (440)
391 4ag6_A VIRB4 ATPase, type IV s 83.9 1 3.5E-05 45.6 5.2 35 176-211 38-72 (392)
392 3cr8_A Sulfate adenylyltranfer 83.4 0.77 2.6E-05 49.0 4.2 39 173-212 369-408 (552)
393 1w36_D RECD, exodeoxyribonucle 83.2 1 3.4E-05 48.7 5.1 34 175-208 165-202 (608)
394 2e87_A Hypothetical protein PH 83.1 2.1 7.3E-05 42.7 7.2 66 280-346 213-292 (357)
395 1lnz_A SPO0B-associated GTP-bi 83.0 1.4 4.8E-05 43.9 5.7 65 281-346 206-286 (342)
396 3sr0_A Adenylate kinase; phosp 82.9 0.84 2.9E-05 42.0 3.7 23 175-198 2-24 (206)
397 3nva_A CTP synthase; rossman f 82.8 1.8 6.2E-05 45.4 6.5 44 173-216 3-47 (535)
398 3orf_A Dihydropteridine reduct 82.7 0.93 3.2E-05 42.7 4.1 42 167-213 16-57 (251)
399 2vo1_A CTP synthase 1; pyrimid 82.6 2.3 8E-05 40.4 6.6 46 173-218 23-69 (295)
400 1w78_A FOLC bifunctional prote 82.6 1.5 5.3E-05 44.8 6.0 34 172-208 48-81 (422)
401 1kgd_A CASK, peripheral plasma 82.5 0.74 2.5E-05 41.0 3.1 25 173-198 5-29 (180)
402 1w5s_A Origin recognition comp 82.5 0.86 2.9E-05 46.0 4.0 33 180-212 58-96 (412)
403 2bjv_A PSP operon transcriptio 82.1 0.77 2.6E-05 43.6 3.3 36 176-212 32-67 (265)
404 3geh_A MNME, tRNA modification 82.1 2.4 8.2E-05 44.1 7.3 66 279-347 270-343 (462)
405 3gee_A MNME, tRNA modification 82.0 1.8 6.1E-05 45.2 6.3 68 279-347 279-356 (476)
406 2eyu_A Twitching motility prot 81.9 1.8 6E-05 41.4 5.7 38 173-211 25-63 (261)
407 2qz4_A Paraplegin; AAA+, SPG7, 81.5 1.8 6E-05 40.7 5.6 33 175-211 41-73 (262)
408 1z6t_A APAF-1, apoptotic prote 81.4 0.9 3.1E-05 48.6 3.8 39 173-212 147-189 (591)
409 2qor_A Guanylate kinase; phosp 81.2 0.71 2.4E-05 42.0 2.5 24 174-198 13-36 (204)
410 3tau_A Guanylate kinase, GMP k 81.1 1 3.4E-05 41.2 3.6 25 173-198 8-32 (208)
411 1jbw_A Folylpolyglutamate synt 80.9 1.7 5.9E-05 44.6 5.6 33 173-208 39-71 (428)
412 2i3b_A HCR-ntpase, human cance 80.9 1.1 3.9E-05 40.5 3.8 27 175-202 3-29 (189)
413 4e22_A Cytidylate kinase; P-lo 80.9 1 3.5E-05 42.6 3.6 26 172-198 26-51 (252)
414 3izq_1 HBS1P, elongation facto 80.5 3.6 0.00012 44.3 8.2 69 279-347 243-318 (611)
415 3eag_A UDP-N-acetylmuramate:L- 80.2 1.6 5.6E-05 43.0 5.0 32 173-207 108-139 (326)
416 3nrs_A Dihydrofolate:folylpoly 80.0 2.2 7.5E-05 44.0 6.1 34 172-208 51-84 (437)
417 2j41_A Guanylate kinase; GMP, 79.9 1.1 3.9E-05 40.3 3.5 24 174-198 7-30 (207)
418 1nij_A Hypothetical protein YJ 79.9 1.1 3.6E-05 44.2 3.5 37 173-212 4-40 (318)
419 1vt4_I APAF-1 related killer D 79.7 1.4 4.9E-05 50.3 4.8 39 173-212 150-191 (1221)
420 3r20_A Cytidylate kinase; stru 79.7 1.3 4.4E-05 41.6 3.8 33 174-212 10-42 (233)
421 1njg_A DNA polymerase III subu 79.5 1.5 5E-05 40.0 4.2 27 174-201 46-72 (250)
422 1c9k_A COBU, adenosylcobinamid 79.3 0.97 3.3E-05 40.7 2.7 32 176-212 2-33 (180)
423 3ged_A Short-chain dehydrogena 79.2 1.3 4.5E-05 42.0 3.7 36 172-212 1-36 (247)
424 1ofh_A ATP-dependent HSL prote 79.1 1.8 6.3E-05 41.6 4.9 34 175-212 52-85 (310)
425 1ye8_A Protein THEP1, hypothet 79.1 1.4 4.7E-05 39.4 3.7 24 175-199 2-25 (178)
426 2gk6_A Regulator of nonsense t 79.0 1.7 5.8E-05 47.1 5.0 34 176-209 197-231 (624)
427 2pt7_A CAG-ALFA; ATPase, prote 79.0 6.3 0.00022 38.8 8.9 35 173-209 171-205 (330)
428 3nwj_A ATSK2; P loop, shikimat 78.9 1.2 4E-05 42.4 3.3 34 173-212 48-81 (250)
429 1e8c_A UDP-N-acetylmuramoylala 78.7 2.3 8E-05 44.6 5.9 35 172-209 107-141 (498)
430 3tr0_A Guanylate kinase, GMP k 78.4 1.3 4.6E-05 39.8 3.5 25 173-198 7-31 (205)
431 2qtf_A Protein HFLX, GTP-bindi 78.3 5.3 0.00018 40.0 8.1 21 174-195 180-200 (364)
432 2wkq_A NPH1-1, RAS-related C3 77.6 5 0.00017 38.9 7.6 66 280-346 202-271 (332)
433 1lv7_A FTSH; alpha/beta domain 77.6 2.4 8.4E-05 39.8 5.2 31 175-209 47-77 (257)
434 2h92_A Cytidylate kinase; ross 77.5 0.82 2.8E-05 41.9 1.7 33 174-212 4-36 (219)
435 4ehx_A Tetraacyldisaccharide 4 77.5 2.9 9.8E-05 41.1 5.7 36 174-211 37-73 (315)
436 1d2n_A N-ethylmaleimide-sensit 77.2 2.4 8.1E-05 40.3 5.0 32 174-209 65-96 (272)
437 2wtz_A UDP-N-acetylmuramoyl-L- 77.2 2.8 9.5E-05 44.5 6.0 35 172-209 145-179 (535)
438 1e9r_A Conjugal transfer prote 77.2 2.2 7.5E-05 43.7 5.1 35 176-211 56-90 (437)
439 2yc2_C IFT27, small RAB-relate 77.2 10 0.00034 33.5 9.1 86 280-370 72-165 (208)
440 1sxj_A Activator 1 95 kDa subu 77.1 1.8 6E-05 45.7 4.4 34 174-211 78-111 (516)
441 2qmh_A HPR kinase/phosphorylas 76.9 1.6 5.5E-05 40.0 3.4 32 173-211 34-65 (205)
442 3sfz_A APAF-1, apoptotic pepti 76.9 1.6 5.5E-05 50.8 4.4 41 171-212 145-189 (1249)
443 2wjy_A Regulator of nonsense t 76.8 2.1 7.2E-05 47.8 5.0 33 176-208 373-406 (800)
444 1um8_A ATP-dependent CLP prote 76.8 1.9 6.6E-05 43.2 4.4 35 174-212 73-107 (376)
445 2vos_A Folylpolyglutamate synt 76.7 2.7 9.3E-05 44.0 5.6 33 173-208 64-96 (487)
446 1o5z_A Folylpolyglutamate synt 76.7 2.5 8.4E-05 43.7 5.2 34 172-208 51-84 (442)
447 4i1u_A Dephospho-COA kinase; s 76.6 1.8 6.2E-05 39.9 3.8 33 173-212 9-41 (210)
448 3ney_A 55 kDa erythrocyte memb 76.3 1.7 5.7E-05 39.7 3.4 24 174-198 20-43 (197)
449 2fna_A Conserved hypothetical 76.3 2.4 8.1E-05 41.5 4.8 35 174-212 31-65 (357)
450 1q3t_A Cytidylate kinase; nucl 76.2 2 6.8E-05 40.0 4.0 34 173-212 16-49 (236)
451 1dek_A Deoxynucleoside monopho 76.2 1.7 5.8E-05 41.0 3.5 29 173-205 1-29 (241)
452 3dii_A Short-chain dehydrogena 76.2 1.8 6.1E-05 40.6 3.7 36 172-212 1-36 (247)
453 3d8b_A Fidgetin-like protein 1 76.0 2.6 9E-05 42.0 5.1 34 173-210 117-150 (357)
454 2ocp_A DGK, deoxyguanosine kin 75.9 1.4 4.9E-05 41.1 3.0 25 174-199 3-27 (241)
455 3b9p_A CG5977-PA, isoform A; A 75.8 2.8 9.5E-05 40.3 5.1 34 173-210 54-87 (297)
456 3h4m_A Proteasome-activating n 75.7 2.5 8.7E-05 40.2 4.8 33 174-210 52-84 (285)
457 2f7s_A C25KG, RAS-related prot 75.6 9.9 0.00034 34.1 8.6 88 280-371 83-174 (217)
458 2vp4_A Deoxynucleoside kinase; 75.6 1.8 6E-05 40.2 3.5 35 172-211 19-53 (230)
459 3ic5_A Putative saccharopine d 75.6 2.2 7.6E-05 34.3 3.7 35 172-212 4-39 (118)
460 3te6_A Regulatory protein SIR3 75.4 2.7 9.2E-05 41.4 4.9 27 174-201 46-72 (318)
461 3tqf_A HPR(Ser) kinase; transf 75.1 2.6 9.1E-05 37.6 4.2 26 174-204 17-42 (181)
462 3a00_A Guanylate kinase, GMP k 74.9 1.4 4.7E-05 39.4 2.5 25 174-199 2-26 (186)
463 2ehd_A Oxidoreductase, oxidore 74.8 1.9 6.3E-05 39.8 3.4 37 171-212 3-39 (234)
464 1xwi_A SKD1 protein; VPS4B, AA 74.8 3.5 0.00012 40.4 5.6 34 174-210 46-79 (322)
465 1xzp_A Probable tRNA modificat 74.6 7.8 0.00027 40.4 8.5 64 279-346 289-362 (482)
466 1tue_A Replication protein E1; 74.5 1.8 6.2E-05 39.8 3.1 23 175-198 60-82 (212)
467 3eph_A TRNA isopentenyltransfe 74.4 3 0.0001 42.4 5.0 33 174-212 3-35 (409)
468 3r6d_A NAD-dependent epimerase 74.2 2.5 8.4E-05 38.6 4.0 37 171-212 3-40 (221)
469 3lk7_A UDP-N-acetylmuramoylala 73.9 3.4 0.00012 42.7 5.5 31 174-207 113-143 (451)
470 2npi_A Protein CLP1; CLP1-PCF1 73.8 1.4 4.9E-05 45.7 2.5 41 173-214 138-179 (460)
471 1lvg_A Guanylate kinase, GMP k 73.5 1.9 6.6E-05 39.0 3.1 25 174-199 5-29 (198)
472 3zvl_A Bifunctional polynucleo 73.4 1.2 4.1E-05 45.7 1.8 34 173-212 258-291 (416)
473 3fdi_A Uncharacterized protein 72.9 1.6 5.6E-05 39.7 2.5 33 174-212 7-39 (201)
474 3guy_A Short-chain dehydrogena 72.7 2.1 7.3E-05 39.4 3.2 35 173-212 1-35 (230)
475 2ekp_A 2-deoxy-D-gluconate 3-d 72.7 2.5 8.7E-05 39.2 3.8 35 173-212 2-36 (239)
476 3pxg_A Negative regulator of g 72.5 2.1 7.1E-05 44.6 3.4 24 176-200 204-227 (468)
477 3cf0_A Transitional endoplasmi 72.4 2.9 9.8E-05 40.6 4.2 32 174-209 50-81 (301)
478 3hws_A ATP-dependent CLP prote 72.1 3.1 0.00011 41.5 4.5 34 174-211 52-85 (363)
479 1xhj_A Nitrogen fixation prote 72.0 12 0.00041 29.2 6.8 72 74-151 6-79 (88)
480 3p19_A BFPVVD8, putative blue 71.9 2.8 9.6E-05 39.8 4.0 36 172-212 15-50 (266)
481 1r5b_A Eukaryotic peptide chai 71.8 3.6 0.00012 42.8 5.0 68 279-346 119-193 (467)
482 3u61_B DNA polymerase accessor 71.8 3.1 0.00011 40.5 4.4 32 176-210 50-81 (324)
483 3eie_A Vacuolar protein sortin 71.7 4.9 0.00017 39.2 5.8 33 174-210 52-84 (322)
484 2xzl_A ATP-dependent helicase 71.7 3.1 0.00011 46.4 4.8 34 176-209 377-411 (802)
485 1p9r_A General secretion pathw 71.2 4.1 0.00014 41.7 5.2 38 173-211 167-204 (418)
486 1fjh_A 3alpha-hydroxysteroid d 71.1 3 0.0001 39.0 3.9 35 173-212 1-35 (257)
487 2x5o_A UDP-N-acetylmuramoylala 70.9 4.2 0.00014 41.8 5.3 33 173-208 104-136 (439)
488 3rsc_A CALG2; TDP, enediyne, s 70.8 5.2 0.00018 40.1 6.0 39 170-210 18-56 (415)
489 3l0i_B RAS-related protein RAB 70.5 6.8 0.00023 34.8 6.1 87 280-370 81-170 (199)
490 3hdt_A Putative kinase; struct 70.3 3.1 0.00011 38.7 3.7 33 174-212 15-47 (223)
491 2l6p_A PHAC1, PHAC2 and PHAD g 70.3 1.2 4E-05 37.5 0.7 26 492-518 14-39 (124)
492 2cfc_A 2-(R)-hydroxypropyl-COM 70.3 3 0.0001 38.7 3.7 36 172-212 1-36 (250)
493 2nwq_A Probable short-chain de 70.2 3.8 0.00013 39.1 4.5 37 171-212 19-55 (272)
494 2qen_A Walker-type ATPase; unk 70.0 3.2 0.00011 40.5 4.0 33 174-212 32-64 (350)
495 1geg_A Acetoin reductase; SDR 69.9 3 0.0001 39.2 3.6 36 172-212 1-36 (256)
496 1sxj_C Activator 1 40 kDa subu 69.7 2.3 7.9E-05 41.9 2.9 36 176-212 49-84 (340)
497 4gp7_A Metallophosphoesterase; 69.6 2.5 8.5E-05 37.2 2.8 19 174-193 10-28 (171)
498 1ojl_A Transcriptional regulat 69.5 1.9 6.6E-05 42.0 2.3 36 176-212 28-63 (304)
499 1p5z_B DCK, deoxycytidine kina 69.4 1.2 3.9E-05 42.4 0.6 26 172-198 23-48 (263)
500 1uay_A Type II 3-hydroxyacyl-C 69.3 2.8 9.5E-05 38.6 3.2 37 172-213 1-37 (242)
No 1
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=2.4e-32 Score=275.11 Aligned_cols=232 Identities=18% Similarity=0.160 Sum_probs=175.7
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc-ccc----c-----CCCCCceeee
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLE----M-----NPEKRTIIPT 240 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~-~~~----~-----~~~~~~i~~~ 240 (527)
...|||||+ |||||||||+|+|||.+||++|+||++||+|||++++..+++.... ... . ....+.+...
T Consensus 46 ~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 46 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 356899998 7999999999999999999999999999999999887665443221 100 0 0111123334
Q ss_pred ccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH
Q 009721 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 241 ~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~ 320 (527)
...++.+++++....... +........+..+.....++.||||++||+++.....+. +.+.++|.+++|++|+..++.
T Consensus 125 ~~~~i~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~ 202 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG-CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIY 202 (314)
T ss_dssp CGGGCEEEECCCCCTTCS-CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHH
T ss_pred cCCCeEEEeCCCCcccch-hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHH
Confidence 456889998775443322 223333445555555445688999999999987765542 336678999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++.++++.++.+ +.++.|+|+|+... ....+++.++++.++++.||++..+++|...|+|+++++
T Consensus 203 ~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~-----------~~~v~~~a~~~~~~~lg~IP~d~~Vr~a~~~G~pvv~~~ 271 (314)
T 3fwy_A 203 AMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTLFEMD 271 (314)
T ss_dssp HHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcCCCc-----------hhHHHHHHHHhCCeEEEEecCchHHHHHHHcCCceEEEC
Confidence 999988887754 45678999998432 135788999999999999999999999999999999999
Q ss_pred CCCHHHHH---HHHHHHHHHHHH
Q 009721 397 PCGEVANT---FQDLGVCVVQQC 416 (527)
Q Consensus 397 p~s~~a~~---~~~la~~i~~~~ 416 (527)
|+|+.+.+ |++||++|+++.
T Consensus 272 P~S~~a~aa~~Y~~LA~eil~~~ 294 (314)
T 3fwy_A 272 EDQDVLAARAEYIRLAESLWRGL 294 (314)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCChhhHHHHHHHHHHHHHHhCC
Confidence 99987665 999999998653
No 2
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.98 E-value=5.9e-32 Score=261.83 Aligned_cols=229 Identities=20% Similarity=0.286 Sum_probs=181.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---cc----ccCCCCCceeeeccCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 244 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~----~~~~~~~~i~~~~~~g 244 (527)
|+++|+|+|+||||||||+|+|||..||++|+||++||+|++.++++.++|.+.. +. ......+.+.+....+
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 6789999999999999999999999999999999999999998888888887543 11 1111223344444579
Q ss_pred ceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
++++|+.... ....... ...+.++++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..++.++.+
T Consensus 81 l~~lp~~~~~-~~~~~~~---~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDW-EHVLKAD---PRKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSH-HHHHHCC---GGGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCcc-chhhhcC---HHHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 9999943221 1111110 123555666554 789999999999988655443 56789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHH
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 404 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~ 404 (527)
.++.+++.+.+..|+|+|++...... ...+++.+.++.++++.||+++.+.++...|+|+.++.|+++++++
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 225 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSDRD--------IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKA 225 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCTTC--------CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHH
T ss_pred HHHHHHhCCCceEEEEEecCCcccch--------hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHH
Confidence 99999988888999999996543211 3577888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009721 405 FQDLGVCVVQQ 415 (527)
Q Consensus 405 ~~~la~~i~~~ 415 (527)
|++|+++|.++
T Consensus 226 ~~~la~~l~~~ 236 (237)
T 1g3q_A 226 FVKLAEEIEKL 236 (237)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999998753
No 3
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.98 E-value=2.8e-32 Score=265.28 Aligned_cols=228 Identities=17% Similarity=0.236 Sum_probs=177.6
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCCCCCCccCC-CCcc--ccc----cCCCC----Ccee
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PENR--LLE----MNPEK----RTII 238 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg-~~~~--~~~----~~~~~----~~i~ 238 (527)
+++++|+|+|+||||||||+|+|||..||++ |+||++||+|++.+++..+++ .... +.+ ..... +.+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 4689999999999999999999999999998 999999999999778888874 2221 111 00001 1233
Q ss_pred eeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch
Q 009721 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (527)
Q Consensus 239 ~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s 318 (527)
....+|++++|++........+. ...+.++++.+. ..||||||||||+++.....+ +..+|.+++|+.|+..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIE----PERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCC----HHHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCC----HHHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 34568999999765433322222 234566665554 689999999999987655444 56789999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCch-hHHhcccCCCceEee
Q 009721 319 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP-TLSASGDSGMPEVAA 395 (527)
Q Consensus 319 ~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~-~i~~a~~~g~pv~~~ 395 (527)
+..+.++++.++..+ ...+++|+||+..... ...+++.+.+|.+++..||++. .+.++...|+|+.++
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~---------~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~ 225 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNSR---------ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKV 225 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT---------SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCCC---------CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCcccc
Confidence 999999999999887 5679999999653321 1247888899999999999996 899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 009721 396 DPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~ 414 (527)
.|+++++++|++|+++|+.
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
No 4
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.97 E-value=1.2e-31 Score=263.16 Aligned_cols=230 Identities=17% Similarity=0.220 Sum_probs=178.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc--------ccCCCCCceee-ecc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--------EMNPEKRTIIP-TEY 242 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~--------~~~~~~~~i~~-~~~ 242 (527)
|+++|+|+|+||||||||+|+|||.+||++|+||++||+|++.+++..++|.+.... ......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 679999999999999999999999999999999999999998888888888764310 11111122222 234
Q ss_pred CCceEEccCCCCCcccccCCccHHHHHHHHHHhcccC-CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
+|++++|++.... ..... ...+.++++.+. . .||||||||||+++...... +..+|.+++|+.|+..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~----~~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSC----HHHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCC----HHHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999775432 11222 234555655554 5 89999999999998654443 56889999999999999999
Q ss_pred HHHHHHHHHcCCC--------CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceE
Q 009721 322 VAKGVRMFSKLKV--------PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEV 393 (527)
Q Consensus 322 ~~~~~~~l~~~~~--------~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~ 393 (527)
+.++++.++..+. ...++|+||+........ .....+++.+.+|.++++.||++..+.++...|+|+.
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~ 228 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRG----DMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI 228 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTT----SSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCccccccc----cccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeE
Confidence 9999999987652 578999999754321000 0012578899999999999999999999999999999
Q ss_pred eeCCCCHHHHHHHHHHHHHHH
Q 009721 394 AADPCGEVANTFQDLGVCVVQ 414 (527)
Q Consensus 394 ~~~p~s~~a~~~~~la~~i~~ 414 (527)
+ .|+++++++|++++++|.+
T Consensus 229 ~-~~~s~~~~~~~~la~~l~~ 248 (260)
T 3q9l_A 229 L-DINADAGKAYADTVERLLG 248 (260)
T ss_dssp G-CTTCHHHHHHHHHHHHHTT
T ss_pred E-CCCCHHHHHHHHHHHHHhc
Confidence 9 9999999999999999974
No 5
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.97 E-value=1.1e-30 Score=257.40 Aligned_cols=226 Identities=39% Similarity=0.634 Sum_probs=175.0
Q ss_pred ccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeee--ccCC
Q 009721 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYLG 244 (527)
Q Consensus 167 ~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~--~~~g 244 (527)
+++++|+++|+|+|+||||||||+|+|||.+||++|+||++||+|+|++++..++|....... .....+.+. ..+|
T Consensus 12 ~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 89 (262)
T 2ph1_A 12 ERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKYG 89 (262)
T ss_dssp HHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTTC
T ss_pred hhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCCC
Confidence 467788999999999999999999999999999999999999999999888888886643210 011222222 4578
Q ss_pred ceEEccCCCCCcc---cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHH
Q 009721 245 VKLVSFGFSGQGR---AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 245 l~vl~~~~~~~~~---~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
++++|++...... ..+.++.....++++++.+.++.||||||||||+++...+....+..+|.+++|+.|+..++.+
T Consensus 90 l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 169 (262)
T 2ph1_A 90 IKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVI 169 (262)
T ss_dssp CEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHH
T ss_pred eEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHH
Confidence 9999976543221 1223445566788888776557899999999999987555444344789999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCC--CccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEe
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDAD--GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 394 (527)
+.+.++.+++.+.+++|+|+||++.... ......+.....+++.+.+|.++++.||++..+.+|...|+|++.
T Consensus 170 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~ 244 (262)
T 2ph1_A 170 VEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEY 244 (262)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeec
Confidence 9999999999999999999999764321 111112234568899999999999999999999999999999863
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.97 E-value=4e-31 Score=260.25 Aligned_cols=228 Identities=23% Similarity=0.273 Sum_probs=177.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc---cc----ccCCCCCceeeeccCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLG 244 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~---~~----~~~~~~~~i~~~~~~g 244 (527)
|+++|+|+|+||||||||+|+|||..||++|+||++||+|++.++++.++|.+.. +. ......+.+.+ ...|
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 6789999999999999999999999999999999999999988888888877643 11 11112233333 2478
Q ss_pred ceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 245 l~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
++++|+........... ...+.++++.+. ..||||||||||+.+.....+ +..+|.+++|+.|+..++.++.+
T Consensus 80 l~~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLRKAN----PEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHHHHC----HHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhhccC----hHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999432211111100 334555665554 789999999999988654443 55789999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHH
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANT 404 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~ 404 (527)
+++.++..+.+.+++|+|++...... ...+++.+.+|.++++.||+++.+.++...|+|+.++.|+++++++
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~~~--------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~ 224 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLGIE--------MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARA 224 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTTHH--------HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHH
T ss_pred HHHHHHhcCCCeeEEEEccCCccccc--------chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHH
Confidence 99999888888999999996532210 3467888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 009721 405 FQDLGVCVVQQ 415 (527)
Q Consensus 405 ~~~la~~i~~~ 415 (527)
|++++++|.++
T Consensus 225 ~~~la~~l~~~ 235 (263)
T 1hyq_A 225 IVELANYIAGG 235 (263)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 99999999765
No 7
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.97 E-value=2.8e-31 Score=260.81 Aligned_cols=231 Identities=20% Similarity=0.293 Sum_probs=172.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--cc---ccCCCCCceeeeccCCc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---EMNPEKRTIIPTEYLGV 245 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~---~~~~~~~~i~~~~~~gl 245 (527)
+.+++|+|+|+||||||||+|+|||..||++|+||++||+|+|++ +..++|.... +. ......+.+.+ .+|+
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN-ATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH-HHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC-HHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 457899999999999999999999999999999999999999864 5566665432 11 01122233333 5799
Q ss_pred eEEccCCCCCcc--cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 246 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 246 ~vl~~~~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
+++|++...... ...... ..+.++++. ..||||||||||+++...... +..+|.+++|+.|+..++.++.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999976542211 111110 344455433 689999999999998665443 4578999999999999999988
Q ss_pred HHHHHHHcC------CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EeccCchhHHhcccCCCceEeeC
Q 009721 324 KGVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 324 ~~~~~l~~~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
++++.++.+ +.++.|+|+||+.... ...++..+.+.+.+|.+++ +.||++..+.+|...|+|+.++.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~------~~~~~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~ 226 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGRT------LLAQQVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHA 226 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTTC------SHHHHHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHC
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCCc------HHHHHHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhC
Confidence 888777642 4667899999965322 1123456778888887765 78999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 009721 397 PCGEVANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~~~~ 418 (527)
|+++++++|++|+++|.+++..
T Consensus 227 ~~~~~~~~~~~la~~l~~~~~~ 248 (257)
T 1wcv_1 227 PTSPGAHAYRRLAEEVMARVQE 248 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHC-
T ss_pred CCChHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999887654
No 8
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.97 E-value=3.6e-30 Score=243.59 Aligned_cols=199 Identities=16% Similarity=0.113 Sum_probs=159.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
||+|+|+|+||||||||+|+|||..|+++|+||++||+|+|++...++.. ...++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~------------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKA------------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTT------------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhc------------------CCCCCcEEecCc
Confidence 68999999999999999999999999999999999999999865443321 112477777542
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (527)
..+.++++.+. +.||||||||||+.+...... +..+|.+++|+.|+..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 33455555544 689999999999997655444 55689999999999999 9999999999876
Q ss_pred C-----CCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EeccCchhHHhcccCCCceEeeCCCCHHHHHHH
Q 009721 333 K-----VPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAADPCGEVANTFQ 406 (527)
Q Consensus 333 ~-----~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~ 406 (527)
+ .+ +++|+||++..... . ....+..+.+|.+++ ..||++..+.++...|+|+.+ .|+++++++|+
T Consensus 125 ~~~~~~~~-~~vv~N~~~~~~~~------~-~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~~~ 195 (206)
T 4dzz_A 125 QAYSRKVE-ARFLITRKIEMATM------L-NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGEIE 195 (206)
T ss_dssp SCGGGCCE-EEEEECSBCTTEEE------E-HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHHHH
T ss_pred HHhCCCCc-EEEEEeccCCCchH------H-HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHHHH
Confidence 4 34 49999997533211 1 235566666898888 889999999999999999999 99999999999
Q ss_pred HHHHHHHHHH
Q 009721 407 DLGVCVVQQC 416 (527)
Q Consensus 407 ~la~~i~~~~ 416 (527)
+|+++|.+++
T Consensus 196 ~la~~i~~~l 205 (206)
T 4dzz_A 196 ILTKEIVRIF 205 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 9
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.97 E-value=1.4e-29 Score=255.13 Aligned_cols=229 Identities=18% Similarity=0.145 Sum_probs=170.8
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--ccc----------cCCCCCce
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----------MNPEKRTI 237 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~~~----------~~~~~~~i 237 (527)
.+.+++|+|+ +||||||||+|+|||.+||++|+||++||+|+|++....+ +.... +.+ .....+.+
T Consensus 38 ~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~~~l-~~~~~~~l~d~l~~~~~~~~~~~~~~~i 115 (307)
T 3end_A 38 ITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTL-TGSLVPTVIDVLKDVDFHPEELRPEDFV 115 (307)
T ss_dssp --CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHH-HTSCCCCHHHHHHHTTSCGGGCCHHHHC
T ss_pred cCCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHHHHh-CccCCCCHHHHHhhccccccCCCHHHhh
Confidence 3467899999 8999999999999999999999999999999998665443 32211 100 11111222
Q ss_pred eeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHh-cccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 009721 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (527)
Q Consensus 238 ~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~ 316 (527)
. ....|++++|++........ .... ......+++. ..++.||||||||||+.+.... ...+..+|.+++|++|+.
T Consensus 116 ~-~~~~~l~vlp~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~-~~~l~~aD~viiv~~~~~ 191 (307)
T 3end_A 116 F-EGFNGVMCVEAGGPPAGTGC-GGYV-VGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDF 191 (307)
T ss_dssp E-ECGGGCEEEECCCCCSSSSC-TTHH-HHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSH
T ss_pred c-cCCCCceEEECCCccccccc-chhh-hHHHHHHHHhhhccccCCEEEEeCCCccchHHH-HHHHHHCCEEEEEecCcH
Confidence 2 35679999997754332211 1111 1122233333 1247899999999998764322 122567899999999999
Q ss_pred chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCce
Q 009721 317 LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPE 392 (527)
Q Consensus 317 ~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv 392 (527)
.++.++.++++.++.. +.+++|+|+||+.. +...+++.+.+|.++++.||+++.+.++...|+|+
T Consensus 192 ~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-----------~~~~~~~~~~~g~~v~~~Ip~~~~v~~a~~~g~~v 260 (307)
T 3end_A 192 DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-----------TDEVDRFCKETNFRRLAHMPDLDAIRRSRLKKKTL 260 (307)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-----------CHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-----------HHHHHHHHHHcCCCceeeCCccHHHHHHHHcCCCe
Confidence 9999999999999864 56678999999652 13578899999999999999999999999999999
Q ss_pred EeeCCC---CHHHHHHHHHHHHHHHH
Q 009721 393 VAADPC---GEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 393 ~~~~p~---s~~a~~~~~la~~i~~~ 415 (527)
.++.|+ ++++++|++|+++|.++
T Consensus 261 ~~~~p~~~~s~~~~~~~~la~~l~~~ 286 (307)
T 3end_A 261 FEMDEDQDVLAARAEYIRLAESLWRG 286 (307)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred EeeCCccccHHHHHHHHHHHHHHHhc
Confidence 999999 89999999999999754
No 10
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.97 E-value=3.3e-30 Score=254.53 Aligned_cols=232 Identities=18% Similarity=0.159 Sum_probs=169.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--c----ccc---CCCCCceeeeccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEM---NPEKRTIIPTEYL 243 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~----~~~---~~~~~~i~~~~~~ 243 (527)
|++|+| ++||||||||+|+|||..||++|+||++||+|+|++++.++++.... + ... ....+.+ ....+
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i-~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSIL-KEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHC-EECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhh-ccCCC
Confidence 589999 68999999999999999999999999999999999988877654332 1 010 1111122 34567
Q ss_pred CceEEccCCCCCcccccCCccHH--HHHHHHHHhcccCCCCEEEEeCCCCCChhhhhh-hhhcCCCeEEEEeCCCcchHH
Q 009721 244 GVKLVSFGFSGQGRAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFI 320 (527)
Q Consensus 244 gl~vl~~~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~-~~~~a~d~viiV~~p~~~s~~ 320 (527)
|++++|++.......... .... ..+.+.+..+ .++||||||||||+.....+.. .....+|.+++|+.|+..++.
T Consensus 79 ~l~vl~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 79 GIRCVESGGPEPGVGCAG-RGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp GCEEEECCCCCTTSSCHH-HHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHH
T ss_pred CeeEEeCCCchhhccccC-cchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHH
Confidence 999999775432211100 0000 1111222222 3679999999998764322211 111368999999999999999
Q ss_pred HHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeC
Q 009721 321 DVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAAD 396 (527)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~ 396 (527)
.+.++++.++.. +.+++|+|+|++... ..++..+++.+.+|.++++.||++..+.+|...|+|+.++.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~ 228 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVA--------NEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYD 228 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSS--------CCHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcc--------hhHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEEC
Confidence 998888887753 566789999996421 12356788889999998999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 009721 397 PCGEVANTFQDLGVCVVQQC 416 (527)
Q Consensus 397 p~s~~a~~~~~la~~i~~~~ 416 (527)
|+++++++|.+++++|.++.
T Consensus 229 ~~s~~~~~~~~l~~~l~~~~ 248 (269)
T 1cp2_A 229 PTCEQAEEYRELARKVDANE 248 (269)
T ss_dssp TTSHHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHhcc
Confidence 99999999999999997653
No 11
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.97 E-value=7.6e-30 Score=251.84 Aligned_cols=230 Identities=18% Similarity=0.088 Sum_probs=155.1
Q ss_pred ccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCC---------cc----ccccCCCCC
Q 009721 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKR 235 (527)
Q Consensus 169 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~---------~~----~~~~~~~~~ 235 (527)
..+++++|+|+|+||||||||+|+|||.+|| +|+||++||+|+|++...++++.. .. +.......+
T Consensus 23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 101 (267)
T 3k9g_A 23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDS 101 (267)
T ss_dssp ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGG
T ss_pred CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHH
Confidence 3467899999999999999999999999999 999999999999987665553211 11 111122233
Q ss_pred ceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009721 236 TIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (527)
Q Consensus 236 ~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~ 315 (527)
.+... .+|++++|++.................+.++++.+. +.||||||||||+++...... +.++|.+++|+.|+
T Consensus 102 ~i~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~ 177 (267)
T 3k9g_A 102 TIINV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAE 177 (267)
T ss_dssp GCEEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESC
T ss_pred hhccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCC
Confidence 34443 489999998754332221111112345667777664 789999999999998765544 56789999999999
Q ss_pred cchHHHHHHHHHHHHcCCCC-EEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEe
Q 009721 316 KLAFIDVAKGVRMFSKLKVP-CIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVA 394 (527)
Q Consensus 316 ~~s~~~~~~~~~~l~~~~~~-~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~ 394 (527)
..++..+.++++.++..+.. .+++|+||+.... ..++..+.+.+ +.++++.||+++.+.++...|.++..
T Consensus 178 ~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-------~~~~~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~ 248 (267)
T 3k9g_A 178 KWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-------THKTLFEILKT--KDRFLGTISEREDLNRRIAENNNFDL 248 (267)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-------SCCHHHHHHTT--STTEEEEEEC----------------
T ss_pred hHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-------hHHHHHHHHhc--CcccceecCcHHHHHHHHHhcCCcch
Confidence 99999999999999988643 3579999973111 12234444444 77899999999999999999998765
Q ss_pred eCCCCHHHHHHHHHHHHHHHH
Q 009721 395 ADPCGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 395 ~~p~s~~a~~~~~la~~i~~~ 415 (527)
.+++.++|+++++++.++
T Consensus 249 ---~~~~~~~~~~i~~~l~~~ 266 (267)
T 3k9g_A 249 ---NKDYIKEYENILEIFLKK 266 (267)
T ss_dssp ---CCHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHhh
Confidence 578999999999999875
No 12
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.96 E-value=1.1e-29 Score=247.39 Aligned_cols=224 Identities=14% Similarity=0.081 Sum_probs=168.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc----cC-------------------
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE----MN------------------- 231 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~----~~------------------- 231 (527)
+|+| |+||||||||+|+|||..||++|+||++||+|+| +++..++|.+..... ..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 8999999999999999999999999999999998 788888886543210 00
Q ss_pred CCCCcee---eeccCCceE-EccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCe
Q 009721 232 PEKRTII---PTEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (527)
Q Consensus 232 ~~~~~i~---~~~~~gl~v-l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~ 307 (527)
...+.+. .....++++ ++.+.......... ......+.++++.+.++.||||||||||+++...... +..+|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY-CRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC-HHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCC-cchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0000000 012246666 66543221111110 0111446666666523899999999999988754443 678899
Q ss_pred EEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhC-CCeEEeccCchhHHhcc
Q 009721 308 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG-IPHLFDLPIRPTLSASG 386 (527)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~l~~IP~~~~i~~a~ 386 (527)
+++|+.|+..++..+.++.++++..+.+.+++|+|++... ...+++.+.++ .++.+.||+++.+.++.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~-----------~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~ 225 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNI-----------KEEKLIKKHLPEDKILGIIPYNELFIELS 225 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCH-----------HHHHHHHHHSCGGGEEEEEECCHHHHSCS
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCCh-----------hHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 9999999999999999999999998988899999996521 24677888887 77889999999999999
Q ss_pred cCCCceEeeCCCCHHHHHHHHHHHHHHHHH
Q 009721 387 DSGMPEVAADPCGEVANTFQDLGVCVVQQC 416 (527)
Q Consensus 387 ~~g~pv~~~~p~s~~a~~~~~la~~i~~~~ 416 (527)
..|+|+.++.| +++++|++++++|.++.
T Consensus 226 ~~g~~~~~~~~--~~~~~~~~la~~l~~~~ 253 (254)
T 3kjh_A 226 LKGEEIWQSTN--PAFVNLHDIYQKLRLEV 253 (254)
T ss_dssp SSSCCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred hCCCccccCCc--HHHHHHHHHHHHHHhhc
Confidence 99999998876 69999999999998764
No 13
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.96 E-value=6.2e-30 Score=255.54 Aligned_cols=232 Identities=21% Similarity=0.199 Sum_probs=168.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc--c---cccC-----CCCCceeeecc
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN-----PEKRTIIPTEY 242 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~--~---~~~~-----~~~~~i~~~~~ 242 (527)
|++|+| ++||||||||+|+|||.+||++|+||++||+|+|++++.++++.... + .... .....+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 589999 68999999999999999999999999999999999988887654322 1 1110 01111223446
Q ss_pred CCceEEccCCCCCcccccCCccHHHHHHHHHHhcc--cCCCCEEEEeCCCCCChhhhh-hhhhcCCCeEEEEeCCCcchH
Q 009721 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 243 ~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~yD~IIID~pp~~~~~~~~-~~~~~a~d~viiV~~p~~~s~ 319 (527)
.|++++|++......... ..... ...++++.+. .+.||||||||||+.....+. ......+|.+++|++|+..++
T Consensus 81 ~~l~~l~~~~~~~~~~~~-~~~~~-~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~ 158 (289)
T 2afh_E 81 GGVKCVESGGPEPGVGCA-GRGVI-TAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAM 158 (289)
T ss_dssp GGCEEEECCCCCTTTCCH-HHHHH-HHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHH
T ss_pred CCeEEEeCCCcccccccc-chhhh-HHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHH
Confidence 799999976543221110 00000 1112333321 368999999999875432211 111236899999999999999
Q ss_pred HHHHHHHHHHHcC----CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 320 IDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
.++.++++.++.+ +.++.|+|+|++... ..++..+++.+.+|.+++..||++..+.+|...|+|+.++
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~--------~~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~~ 230 (289)
T 2afh_E 159 YAANNISKGIVKYANSGSVRLGGLICNSRNTD--------REDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEY 230 (289)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT--------THHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEecCCch--------hHHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCceee
Confidence 9998888777653 667889999996421 1224677888899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 009721 396 DPCGEVANTFQDLGVCVVQQ 415 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~~~ 415 (527)
.|+++++++|++|+++|.++
T Consensus 231 ~~~s~~~~~~~~la~~l~~~ 250 (289)
T 2afh_E 231 DPKAKQADEYRALARKVVDN 250 (289)
T ss_dssp CTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999754
No 14
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.96 E-value=6.3e-29 Score=249.23 Aligned_cols=239 Identities=14% Similarity=0.151 Sum_probs=174.5
Q ss_pred CcceEEEEee--CcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCc---cCCCCcc---cc---ccCCCCCceee
Q 009721 171 KISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT---MVSPENR---LL---EMNPEKRTIIP 239 (527)
Q Consensus 171 ~~~kvIav~s--~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~---~lg~~~~---~~---~~~~~~~~i~~ 239 (527)
++.++|+|+| +||||||||+|+|||..||++|+||++||+|+|++...+ .++.+.. +. ......+.+..
T Consensus 32 ~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 111 (298)
T 2oze_A 32 NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH 111 (298)
T ss_dssp HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE
T ss_pred CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc
Confidence 3457899999 899999999999999999999999999999999875332 2343311 10 00112223333
Q ss_pred eccCCceEEccCCCCCcccccC----CccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009721 240 TEYLGVKLVSFGFSGQGRAIMR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (527)
Q Consensus 240 ~~~~gl~vl~~~~~~~~~~~~~----~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~ 315 (527)
. .+|++++|++........+. .......+.++++.+. +.||||||||||+.+...... +.++|.+++|+.|+
T Consensus 112 ~-~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~ 187 (298)
T 2oze_A 112 L-TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAE 187 (298)
T ss_dssp S-SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGG
T ss_pred c-CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCc
Confidence 3 47999999775432211111 1112345777777765 789999999999998765444 55789999999999
Q ss_pred cchHHHHHHHHHHHHcC------CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCC--CeE-EeccCchhHHhcc
Q 009721 316 KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGI--PHL-FDLPIRPTLSASG 386 (527)
Q Consensus 316 ~~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~l-~~IP~~~~i~~a~ 386 (527)
..++.++.++++.++.. +.+++|+|+||++... . ..++..+++.+.++. +++ ..||++..+.+|.
T Consensus 188 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~ 261 (298)
T 2oze_A 188 EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS--A----TIKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWS 261 (298)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC--H----HHHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc--H----HHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 99999999998888763 6778999999965332 1 122467788888885 443 5799999999999
Q ss_pred cCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHHh
Q 009721 387 DSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIR 420 (527)
Q Consensus 387 ~~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~~~ 420 (527)
..|+|+.+ ..+++++++|.+|+++|.+++.+..
T Consensus 262 ~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~~~~ 294 (298)
T 2oze_A 262 KNGITEHK-GYDKKVLSMYKNVFFEMLERIIQLE 294 (298)
T ss_dssp HHCCCSSS-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCChhh-hcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999886 2234689999999999998886543
No 15
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.96 E-value=1.4e-29 Score=264.57 Aligned_cols=242 Identities=17% Similarity=0.218 Sum_probs=173.5
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCCCCCCCCccCCCCccc-----------ccc--
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRL-----------LEM-- 230 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~~~~s~~~~lg~~~~~-----------~~~-- 230 (527)
..++++|+|+|+||||||||+|+|||..||+ +|+||++||+|+|+ +++.++|..... ...
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 183 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVS 183 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhcc
Confidence 3568999999999999999999999999994 69999999999987 577777754321 000
Q ss_pred --CCCCCceeeeccCCceEEccCCCCCcc----------cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh
Q 009721 231 --NPEKRTIIPTEYLGVKLVSFGFSGQGR----------AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 298 (527)
Q Consensus 231 --~~~~~~i~~~~~~gl~vl~~~~~~~~~----------~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~ 298 (527)
....+.+.+...+|++++|++...... ...........++++++.+. ++||||||||||+++.....
T Consensus 184 ~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~ 262 (398)
T 3ez2_A 184 REELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKN 262 (398)
T ss_dssp HHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHH
T ss_pred ccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHH
Confidence 011234555667899999987642110 00011112234455665554 78999999999999877655
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHHH-------HHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 009721 299 LCQVVPLTAAVIVTTPQKLAFIDVAKG-------VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 369 (527)
Q Consensus 299 ~~~~~a~d~viiV~~p~~~s~~~~~~~-------~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (527)
. +.++|.+++|++|+..++..+.+. ++.+++. +.++.|+|.|+....... ..+...+++.+.+|
T Consensus 263 ~--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~~-----~~~~~~~~l~~~~g 335 (398)
T 3ez2_A 263 A--LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNKA-----DHKYCHSLAKEVFG 335 (398)
T ss_dssp H--HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSCH-----HHHHHHHHHHHHHG
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCch-----hHHHHHHHHHHHhc
Confidence 4 557899999999998876554443 3344443 455667777765544321 12245678888899
Q ss_pred CCeE-EeccCchhHHhcccCCCceEeeCCCC---------HHHHHHHHHHHHHHHHHHHHh
Q 009721 370 IPHL-FDLPIRPTLSASGDSGMPEVAADPCG---------EVANTFQDLGVCVVQQCAKIR 420 (527)
Q Consensus 370 ~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~s---------~~a~~~~~la~~i~~~~~~~~ 420 (527)
.+++ ..||++..+.++...|+|++++.|++ .+.+.|.+++++|.++++.++
T Consensus 336 ~~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l~~~~ 396 (398)
T 3ez2_A 336 GDMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRIEFIR 396 (398)
T ss_dssp GGBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777 78999999999999999999998863 567788999999988887765
No 16
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.96 E-value=1.3e-28 Score=253.70 Aligned_cols=244 Identities=17% Similarity=0.119 Sum_probs=148.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc---------------------cccc--
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLE-- 229 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~---------------------~~~~-- 229 (527)
||+|+|+|+||||||||+|+|||..||++|+|||+||+|+|++.+..+++.+. .+.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 68999999999999999999999999999999999999999988777765321 1111
Q ss_pred -----c-CCCCC--ceeeeccCCceEEccCCCCCcccccC---------Cc----cHHHHHHHHHHhcc-cCCCCEEEEe
Q 009721 230 -----M-NPEKR--TIIPTEYLGVKLVSFGFSGQGRAIMR---------GP----MVSGVINQLLTTTE-WGELDYLVID 287 (527)
Q Consensus 230 -----~-~~~~~--~i~~~~~~gl~vl~~~~~~~~~~~~~---------~~----~~~~~l~~ll~~~~-~~~yD~IIID 287 (527)
. ....+ .+.....+|++++|++.......... +. .....++++++.+. +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 1 11111 24444456999999875433221110 00 00123566666553 2489999999
Q ss_pred CCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC----------------------------------
Q 009721 288 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK---------------------------------- 333 (527)
Q Consensus 288 ~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~---------------------------------- 333 (527)
|||+++.....+ +.++|.+++|+.|+..++.++.++++.+++++
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999998665544 66799999999999999999998888776542
Q ss_pred ---CCEEEEEEecccccCCCc--cccccCCchHHHHHHHh-----------CCCeEEeccCch-hHHhcccCCCceEeeC
Q 009721 334 ---VPCIAVVENMCHFDADGK--RYYPFGRGSGSQVVQQF-----------GIPHLFDLPIRP-TLSASGDSGMPEVAAD 396 (527)
Q Consensus 334 ---~~~~gvV~N~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------g~~~l~~IP~~~-~i~~a~~~g~pv~~~~ 396 (527)
.+++|+|+|++....... ..........+.+.+.. ....++.||... .+..|...|.|+++..
T Consensus 239 ~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l~ 318 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMELS 318 (361)
T ss_dssp SSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC--------------------
T ss_pred ccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEECc
Confidence 677999999965433111 00111222334444443 334588888765 5678999999999997
Q ss_pred CC-----------CHHHHHHHHHHHHHHHHHHH
Q 009721 397 PC-----------GEVANTFQDLGVCVVQQCAK 418 (527)
Q Consensus 397 p~-----------s~~a~~~~~la~~i~~~~~~ 418 (527)
+. ..+.+.|.+||..|.+++..
T Consensus 319 ~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~ 351 (361)
T 3pg5_A 319 SSDRVRGAQINQRNAYAEKINSVAANVYKALFP 351 (361)
T ss_dssp --------------CCHHHHHHHHHHHHHHHCC
T ss_pred hhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 73 36788899999888877653
No 17
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.96 E-value=3.8e-29 Score=261.63 Aligned_cols=242 Identities=18% Similarity=0.199 Sum_probs=139.4
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHH------HCCCcEEEEEeCCCCCCCCccCCCCcccc-----------c---
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E--- 229 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA------~~G~rVllID~D~~~~s~~~~lg~~~~~~-----------~--- 229 (527)
..++++|+|+|+||||||||+|+|||..|| ++|+||++||+|+|+ +++.+||...... .
T Consensus 108 ~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~ 186 (403)
T 3ez9_A 108 HKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLD 186 (403)
T ss_dssp SCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCC
T ss_pred CCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhccc
Confidence 356899999999999999999999999999 679999999999988 6777777654211 0
Q ss_pred -cCCCCCceeeeccCCceEEccCCCCCcc---------cccCC-ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh
Q 009721 230 -MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT 298 (527)
Q Consensus 230 -~~~~~~~i~~~~~~gl~vl~~~~~~~~~---------~~~~~-~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~ 298 (527)
.....+.+.+...+|++++|++...... ..+.+ ......++++++.+. +.||||||||||+++.....
T Consensus 187 ~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~ 265 (403)
T 3ez9_A 187 AETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLN 265 (403)
T ss_dssp HHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHH
T ss_pred ccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHH
Confidence 0012344556667899999987642110 00111 112234456666654 78999999999999866554
Q ss_pred hhhhcCCCeEEEEeCCCcchHHHHHHH-------HHHHHcC--CCCEEEEEEecccccCCCccccccCCchHHHHHHHhC
Q 009721 299 LCQVVPLTAAVIVTTPQKLAFIDVAKG-------VRMFSKL--KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFG 369 (527)
Q Consensus 299 ~~~~~a~d~viiV~~p~~~s~~~~~~~-------~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g 369 (527)
. +.++|.+++|++|+..++.++.+. ++.+++. +.++.|++.++..+.... ..+...+.+.+.+|
T Consensus 266 a--l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~-----~~~~~~~~~~~~~g 338 (403)
T 3ez9_A 266 G--LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR-----DHETSHSLAREVYA 338 (403)
T ss_dssp H--HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH-----HHHHHHHHHHHHHT
T ss_pred H--HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch-----hHHHHHHHHHHHhh
Confidence 4 568899999999998876654443 3444444 444556655543333211 11235677888899
Q ss_pred CCeE-EeccCchhHHhcccCCCceEeeCCC---------CHHHHHHHHHHHHHHHHHHHHh
Q 009721 370 IPHL-FDLPIRPTLSASGDSGMPEVAADPC---------GEVANTFQDLGVCVVQQCAKIR 420 (527)
Q Consensus 370 ~~~l-~~IP~~~~i~~a~~~g~pv~~~~p~---------s~~a~~~~~la~~i~~~~~~~~ 420 (527)
.+++ +.||+++.+.++...|+|++++.|+ ..+.+.|.+++++|.++++..+
T Consensus 339 ~~vl~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~~~~ 399 (403)
T 3ez9_A 339 SNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIEFVR 399 (403)
T ss_dssp TSEECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9887 7899999999999999999999875 3566789999999998888764
No 18
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.95 E-value=5.4e-28 Score=230.01 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=152.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~~ 253 (527)
|+|+|+|+||||||||+|+|||..|+++| ||++||+|+|++...+ ++. . + .+ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~-~~~-~---------~--l~-----~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGW-GKR-G---------S--LP-----FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHH-HHH-S---------C--CS-----SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHH-hcC-C---------C--CC-----cceeCHH--
Confidence 48999999999999999999999999999 9999999999854332 222 0 0 00 1445421
Q ss_pred CCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCC-CChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC
Q 009721 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (527)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~-~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (527)
.++.+ ++.||||||||||+ .+...... +..+|.+++|+.|+..++..+.++++.++..
T Consensus 60 --------------~l~~l-----~~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY-----APKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH-----GGGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh-----hhcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 23333 37899999999999 77655443 5678999999999999999999999999885
Q ss_pred -CCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE-EeccCchhHHhcccCCCceEee-CCCC-HHHHHHHHH
Q 009721 333 -KVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL-FDLPIRPTLSASGDSGMPEVAA-DPCG-EVANTFQDL 408 (527)
Q Consensus 333 -~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l-~~IP~~~~i~~a~~~g~pv~~~-~p~s-~~a~~~~~l 408 (527)
+.+ +++|+||+..... .. .++ ..+..+.+|.+++ ..||++..+.+|...|+|+.++ .|++ +++++|+++
T Consensus 119 ~~~~-~~vv~N~~~~~~~-~~----~~~-~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~~~l 191 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYPS-KD----GDE-ARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDYKAT 191 (209)
T ss_dssp CSSS-EEEEECSBCCTTS-CH----HHH-HHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHHHHH
T ss_pred cCCC-EEEEEEecCCccc-hH----HHH-HHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHHHHH
Confidence 455 8999999653320 11 112 3333344888877 6899999999999999999999 9999 999999999
Q ss_pred HHHHHHHHHHH
Q 009721 409 GVCVVQQCAKI 419 (527)
Q Consensus 409 a~~i~~~~~~~ 419 (527)
+++|.+++...
T Consensus 192 ~~el~~~~~~~ 202 (209)
T 3cwq_A 192 GKEIVEEILTL 202 (209)
T ss_dssp HHHHHHHHTST
T ss_pred HHHHHHHHHhh
Confidence 99998776543
No 19
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.94 E-value=3.6e-28 Score=242.49 Aligned_cols=224 Identities=17% Similarity=0.118 Sum_probs=155.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCc-eEEcc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 250 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl-~vl~~ 250 (527)
|+++|+|+|+||||||||+|+|||..||++|+||++||+|+..+++..+++....+.... . .....++ +++|+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~----~~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--K----IELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--T----CCCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--c----ccCCCchheEeeC
Confidence 678999999999999999999999999999999999999994446666655433211100 0 0112467 77774
Q ss_pred CC--CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHH
Q 009721 251 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (527)
Q Consensus 251 ~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~ 328 (527)
+. ....... .....+.++++.+. +.||||||||||+.+.....+ +..+|.+++|+.|+..++..+.++++.
T Consensus 77 ~~~~~~~~~~~----~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPEE----EQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCHH----HHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhhh----hhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 1111111 12235566666554 689999999999997655444 567899999999999887765544433
Q ss_pred -------------H---Hc---C--C-C-CEEEEEEecccccCCCccccccCCchHHHHH---HHhCCCeEEeccCchhH
Q 009721 329 -------------F---SK---L--K-V-PCIAVVENMCHFDADGKRYYPFGRGSGSQVV---QQFGIPHLFDLPIRPTL 382 (527)
Q Consensus 329 -------------l---~~---~--~-~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~l~~IP~~~~i 382 (527)
+ ++ . + . ..+++|+||+..... .. .++..+.+. +.+|.++.+.||++..+
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~~~Ip~~~~~ 224 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEA-RN----RKRLEDRLNALAKRVGFRIGPGLRDRVIY 224 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCCG-GG----HHHHHHHHHHHHHHHCCEEEECCCCCHHH
T ss_pred hhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCCc-ch----hHHHHHHHHHHHHHcCCccCCCCCchHHH
Confidence 3 21 1 2 1 236899999654320 10 112233333 34888777889999999
Q ss_pred HhcccCCCceEeeCC----------CCHHHHHHHHHHHHHH
Q 009721 383 SASGDSGMPEVAADP----------CGEVANTFQDLGVCVV 413 (527)
Q Consensus 383 ~~a~~~g~pv~~~~p----------~s~~a~~~~~la~~i~ 413 (527)
.+|...|+|+.++.| +++++++|++|+++|.
T Consensus 225 ~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~ 265 (286)
T 2xj4_A 225 RELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLG 265 (286)
T ss_dssp HHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhC
Confidence 999999999999998 8899999999999885
No 20
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=99.93 E-value=3e-26 Score=190.97 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=77.6
Q ss_pred cccceeeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCC
Q 009721 422 QVSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPD 501 (527)
Q Consensus 422 ~v~t~i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~D 501 (527)
..|+.+.+++..+.|.|.|+| |..+.|++.|||+|||||+|+++.|+||+ +.++|.+|.+.+++++|+|+|+|.|+|
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~D-G~~~~~~~~wLRd~c~ca~c~~~~t~qr~--l~~~~~~v~~~~i~~~g~yal~i~wsD 83 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWAD-GHTSRLTFEHLRVECPCAECKGHTPDQAQ--IVTGKEHVSVVEVVPVGHYAVQLHFSD 83 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETT-SCEEEEEHHHHHHTCCCC----------C--CCCCCTTCCEEEEEEETTTEEEEEETT
T ss_pred CCCeEEEEeCCCCEEEEEeCC-CCEEEECHHHHHhhCCChhhcCccCCccc--cccCCCCcceeEEEECCCCeEEEEECC
Confidence 367889999999999999999 89999999999999999999999999997 468999999999999999999999999
Q ss_pred CC-cccCChHHHHhchh
Q 009721 502 GF-SQIAPYDQLQTMER 517 (527)
Q Consensus 502 gh-~s~y~~~~L~~~~~ 517 (527)
|| +|+|+|+||+++++
T Consensus 84 GH~~s~Y~~~~L~~~~~ 100 (101)
T 3luu_A 84 GHNTGIFTWEYLRRLDA 100 (101)
T ss_dssp SCCCCEEEHHHHHHHTT
T ss_pred CCceeEECHHHHHHhhh
Confidence 99 99999999999874
No 21
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.92 E-value=2.1e-24 Score=214.67 Aligned_cols=172 Identities=17% Similarity=0.222 Sum_probs=134.3
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~g 244 (527)
+.+++|+|+|+|||+||||+|+|||..||+.|+||++||+|++.++++.+|+.+.. +.......+.+.+...+|
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 169 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAK 169 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCC
Confidence 34579999999999999999999999999999999999999999999888887643 222234456677777789
Q ss_pred ceEEccCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
++++|++..... .+.+.. ..+.++++.+. ..||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 170 l~vl~~g~~~~~~~ell~~----~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da~~-l~~~aD~vllVv~~~~~~~~~~~ 243 (286)
T 3la6_A 170 FDLIPRGQVPPNPSELLMS----ERFAELVNWAS-KNYDLVLIDTPPILAVTDAAI-VGRHVGTTLMVARYAVNTLKEVE 243 (286)
T ss_dssp EEEECCCSCCSCHHHHHTS----HHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HTTTCSEEEEEEETTTSBHHHHH
T ss_pred EEEEeCCCCCCCHHHHhch----HHHHHHHHHHH-hCCCEEEEcCCCCcchHHHHH-HHHHCCeEEEEEeCCCCcHHHHH
Confidence 999998865432 233333 34455555543 689999999999765421111 13357999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (527)
++++.++..+.+++|+|+|++....
T Consensus 244 ~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 244 TSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHhCCCCEEEEEEcCccccc
Confidence 9999999999999999999976443
No 22
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.90 E-value=6e-24 Score=210.00 Aligned_cols=171 Identities=23% Similarity=0.265 Sum_probs=129.4
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~g 244 (527)
+.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.++++.+|+.... +.......+.+.+...+|
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 34689999999999999999999999999999999999999999998888886543 111112234455555689
Q ss_pred ceEEccCCCCCc-ccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 245 VKLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 245 l~vl~~~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
++++|++..... .+.+.. ..+.++++.+. +.||||||||||......... ....+|.+++|+.++..+...+.
T Consensus 160 l~vl~~g~~~~~~~ell~~----~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITS----RAFANLYDTLL-MNYNFVIIDTPPVNTVTDAQL-FSKFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEEECCCSCCSCHHHHHTS----HHHHHHHHHHH-HHCSEEEEECCCTTTCSHHHH-HHHHHCEEEEEEETTSCCHHHHH
T ss_pred EEEEECCCCCCCHHHHhCh----HHHHHHHHHHH-hCCCEEEEeCCCCchHHHHHH-HHHHCCEEEEEEeCCCCcHHHHH
Confidence 999998764332 222332 33455555543 689999999999765321111 12246999999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEeccccc
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.++.++..+.+++|+|+|++...
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCC
Confidence 999999999999999999997543
No 23
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.90 E-value=2.2e-23 Score=208.84 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=130.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcc------ccccCCCCCceeeeccCCc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~------~~~~~~~~~~i~~~~~~gl 245 (527)
.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|++.+++..+|+.... +.......+.+.+...+|+
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4579999999999999999999999999999999999999998898888876543 1111222344555566899
Q ss_pred eEEccCCCCCcc-cccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHH
Q 009721 246 KLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (527)
Q Consensus 246 ~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~ 324 (527)
+++|++...... +.+.. ..+.++++.+. +.||||||||||+........ ....+|.+++|+.++..+...+.+
T Consensus 183 ~vl~~g~~~~~~~ell~~----~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~~~-l~~~ad~vilV~~~~~~~~~~~~~ 256 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMR----DRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV-VGRSVGTSLLVARFGLNTAKEVSL 256 (299)
T ss_dssp EEECCCSCCSCHHHHHTS----HHHHHHHHHHH-HHCSEEEEECCCTTTCTHHHH-HGGGCSEEEEEEETTTSCTTHHHH
T ss_pred EEEECCCCCCCHHHHhCH----HHHHHHHHHHH-hCCCEEEEcCCCCchhHHHHH-HHHHCCEEEEEEcCCCChHHHHHH
Confidence 999987644322 22332 34555555543 689999999999775321111 123579999999999999999999
Q ss_pred HHHHHHcCCCCEEEEEEecccccC
Q 009721 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (527)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~~~~~~ 348 (527)
.++.+++.+.+++|+|+|++....
T Consensus 257 ~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 257 SMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHhCCCCeEEEEEeCCccCC
Confidence 999999999999999999976443
No 24
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.89 E-value=3.3e-23 Score=212.16 Aligned_cols=201 Identities=20% Similarity=0.223 Sum_probs=135.5
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
..+++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+|+.+........ ...++++....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v-------~g~~~l~~~~i 94 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTKV-------KGYDNLYVVEI 94 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEEC-------TTCSSEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCcccc-------ccccceeeecc
Confidence 4578999999999999999999999999999999999999995 477777776422100000 00112222211
Q ss_pred CCC-----------------------CC----cccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh-hhh--
Q 009721 251 GFS-----------------------GQ----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLC-- 300 (527)
Q Consensus 251 ~~~-----------------------~~----~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~-~~~-- 300 (527)
... .. ......+......+.++.+.+.+.+||||||||||+.....+ .+.
T Consensus 95 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~ 174 (349)
T 3ug7_A 95 DPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEV 174 (349)
T ss_dssp CHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHH
Confidence 100 00 000112222223444444444457999999999996543211 000
Q ss_pred ----------------------------------------------------------hhcCCCeEEEEeCCCcchHHHH
Q 009721 301 ----------------------------------------------------------QVVPLTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 301 ----------------------------------------------------------~~~a~d~viiV~~p~~~s~~~~ 322 (527)
.....+.+++|++|+..++.++
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~ 254 (349)
T 3ug7_A 175 MDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILES 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHH
Confidence 0011478999999999999999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 323 AKGVRMFSKLKVPCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
.+.++++++.++++.|+|+||+.+... ...+ ...++.++++.+.++.+.++.||+++
T Consensus 255 ~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~l~~iPl~~ 316 (349)
T 3ug7_A 255 ERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARR-ELQLKRLEMIKEKFGDKVIAYVPLLR 316 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHSTTSEEEEEECCS
T ss_pred HHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 999999999999999999999876521 1111 12256788999999999999999865
No 25
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=8.4e-24 Score=214.52 Aligned_cols=206 Identities=16% Similarity=0.216 Sum_probs=131.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccc--cccCCCC--------Cceee---
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--LEMNPEK--------RTIIP--- 239 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~--~~~~~~~--------~~i~~--- 239 (527)
|++|+|+|+||||||||+|+|||.+||++|+||++||+|+ .++++.+||.+... ....... ..+..
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~~ 91 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQA 91 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHHH
Confidence 5799999999999999999999999999999999999999 45777777754210 0000000 00000
Q ss_pred -eccCCceEEccCCCCC-----cccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-hh--------------
Q 009721 240 -TEYLGVKLVSFGFSGQ-----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LT-------------- 298 (527)
Q Consensus 240 -~~~~gl~vl~~~~~~~-----~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-~~-------------- 298 (527)
.......+++.+.... .....++......+.++.+.+.+.+||||||||||+.+... +.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~ 171 (324)
T 3zq6_A 92 KLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIK 171 (324)
T ss_dssp HC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 0000011223221100 11122333333344555544445899999999999432110 00
Q ss_pred --------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCC
Q 009721 299 --------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (527)
Q Consensus 299 --------------------------------------------~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (527)
.......+.+++|++|+..++.++.+.++++++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi 251 (324)
T 3zq6_A 172 IRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSI 251 (324)
T ss_dssp HHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCC
Confidence 000011368999999999999999999999999999
Q ss_pred CEEEEEEecccccCC-----CccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 335 PCIAVVENMCHFDAD-----GKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 335 ~~~gvV~N~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
++.|+|+||+.+... ...+ ..+.+.++++.+.|+...++.||..+
T Consensus 252 ~v~gvV~N~~~~~~~~~~~~~~~~-~~~~~~l~~i~~~~~~~~~~~iPl~~ 301 (324)
T 3zq6_A 252 HADGVIVNQVLPEESDCEFCNARR-KLQQERLKQIREKFSDKVVAEVPLLK 301 (324)
T ss_dssp CEEEEEEEEECCSCCCSHHHHHHH-HHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred CccEEEEcCCccccCCChHHHHHH-HHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 999999999876521 1111 22346788999999999999999754
No 26
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=99.89 E-value=1.5e-23 Score=181.66 Aligned_cols=90 Identities=19% Similarity=0.327 Sum_probs=82.5
Q ss_pred ccceeeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCCC
Q 009721 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (527)
Q Consensus 423 v~t~i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dg 502 (527)
.|+.+.++...+.|.|.|.| |..+.|++.|||+|||||+|+++. ||+++. .+.+|.+.+++++|+|+|+|.|+||
T Consensus 10 ~p~~i~l~~~~~~L~v~w~D-G~~~~~~~~wLRd~Cpcaec~~~~--qr~l~~--~~~dv~i~~i~~vG~yaL~I~wsDG 84 (132)
T 2l6n_A 10 KVTGLKLKRKSRQLEISFDN-GQQFTLSCELLRVYSPSAEVHGHG--NPVLVT--HKKNVNINAITPVGNYAVKLVFDDG 84 (132)
T ss_dssp CEEEEEEEGGGTEEEEEETT-SCEEEEEHHHHHHSCSCSSSSSSS--CCCCCC--CCSSCCEEEEEEETTTEEEEEETTT
T ss_pred CCeeEEEecCCCEEEEEECC-CCEEEeCHHHHHhcCCCcccCCcc--cccccc--CCCCcceEEEEecCCceEEEEeCCC
Confidence 57888999889999999999 899999999999999999999986 898886 5689999999999999999999999
Q ss_pred Cc-ccCChHHHHhchh
Q 009721 503 FS-QIAPYDQLQTMER 517 (527)
Q Consensus 503 h~-s~y~~~~L~~~~~ 517 (527)
|. |+|+|+||++++.
T Consensus 85 H~SGiYs~~~L~~l~~ 100 (132)
T 2l6n_A 85 HDTGLYSWKVLYDLAS 100 (132)
T ss_dssp BCCCCEEHHHHHHHHT
T ss_pred CccCEECHHHHHHHhh
Confidence 95 5999999999853
No 27
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.89 E-value=6.5e-24 Score=219.53 Aligned_cols=196 Identities=18% Similarity=0.191 Sum_probs=133.4
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc------ccC--------CCCC
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL------EMN--------PEKR 235 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~------~~~--------~~~~ 235 (527)
.+.+++|+|+|+||||||||+|+|||..||++|+||++||+| ..++++.++|.+.... ... ...+
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~ 218 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLES 218 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHH
Confidence 356799999999999999999999999999999999999999 5668888888765411 000 0112
Q ss_pred ceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC
Q 009721 236 TIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (527)
Q Consensus 236 ~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~ 315 (527)
.+.. ...|++++|++........+.......+++.+.. ++.||||||||||+.+.....+ +..+|.+++|++|+
T Consensus 219 ~i~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 219 CIKQ-SQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGS 292 (373)
T ss_dssp TCEE-CTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCC
T ss_pred Hhhc-CCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCC
Confidence 2222 3479999998765544444443444444444432 3689999999999998766555 56789999999999
Q ss_pred cchHH---HHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchh
Q 009721 316 KLAFI---DVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (527)
Q Consensus 316 ~~s~~---~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (527)
..++. ++.+.++.+.. +.+ +++|.|++....+-. ...+.+.+..+.++++.||+++.
T Consensus 293 ~~s~~~l~~~~~~l~~l~~-~~~-~~vv~N~~~v~~~~~-------~~~~~fl~~~~l~~lG~IP~D~~ 352 (373)
T 3fkq_A 293 QLSNYKFMRAYESVVLLEQ-NDD-INIIRNMNMIYNKFS-------NKNSEMLSNISIKTIGGAPRYEH 352 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTT-STT-CCCGGGEEEEECSCC-------TTTCCCCCSCSCEEEEECCCCTT
T ss_pred chHHHHHHHHHHHHHHhcc-cCC-cEEEehhHHHHHHHH-------HHHHHHhhcCCccceeecCCCCC
Confidence 98844 44555555544 222 566666653222110 11222233457899999999874
No 28
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=99.88 E-value=3.9e-23 Score=177.58 Aligned_cols=89 Identities=22% Similarity=0.432 Sum_probs=82.4
Q ss_pred ccceeeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCCC
Q 009721 423 VSTAVIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDG 502 (527)
Q Consensus 423 v~t~i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dg 502 (527)
.|+.+.++...+.+.|.|. |..+.|++.|||+|||||+|+++ +||+++.. +.+|.+.+++++|||+|+|.|+||
T Consensus 4 ~P~~i~l~~~~~~L~v~w~--G~~~~~~~~wLRd~Cpcaec~~~--~qr~l~~~--~~dv~i~~i~~~G~yaL~I~wsDG 77 (124)
T 2l6p_A 4 IPSAIQLHKASKTLTLRYG--EDSYDLPAEFLRVHSPSAEVQGH--GNPVLQYG--KLNVGLVGVEPAGQYALKLSFDDG 77 (124)
T ss_dssp CCSCCBCCTTTCEEEEEET--TEEEEEEHHHHHHTCCCSSCCSC--CCCCCCCS--CTTCCEEEEEECSSSCEEEEETTS
T ss_pred CCeEEEEecCCCEEEEEEC--CEEEEeCHHHHHhcCCCcccCCC--CccccccC--CCCcceEEEEEcCCceEEEEECCC
Confidence 5788889988999999998 78899999999999999999997 99999874 689999999999999999999999
Q ss_pred C-cccCChHHHHhchh
Q 009721 503 F-SQIAPYDQLQTMER 517 (527)
Q Consensus 503 h-~s~y~~~~L~~~~~ 517 (527)
| +|+|+|+||++++.
T Consensus 78 H~sgiY~~~~L~~l~~ 93 (124)
T 2l6p_A 78 HDSGLFTWDYLYELAT 93 (124)
T ss_dssp CCCCCCTTHHHHHHHT
T ss_pred CcceEECHHHHHHhhh
Confidence 9 79999999999853
No 29
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.88 E-value=2.5e-23 Score=213.21 Aligned_cols=226 Identities=14% Similarity=0.111 Sum_probs=135.7
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHH--HCCCcEEEEEeCCCCCCCCccCCCCccc-----cccCCC-------CCc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRL-----LEMNPE-------KRT 236 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~~-----~~~~~~-------~~~ 236 (527)
...++|+|+|+||||||||+|+|||.+|| ++|+||++||+|++ ++++.+||.+... ...... ...
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~ 93 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAA 93 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHH
Confidence 34578999999999999999999999999 89999999999996 7888888765320 000000 000
Q ss_pred eeee----c-----------cCCceEEccCCCCCcc-cccCCccHHHHHHHHHHhcccC------CCCEEEEeCCC-CCC
Q 009721 237 IIPT----E-----------YLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GTG 293 (527)
Q Consensus 237 i~~~----~-----------~~gl~vl~~~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~------~yD~IIID~pp-~~~ 293 (527)
+... . ..++++++.+....+. ...++......+.++++.+.+. .|||||||||| |..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~t 173 (354)
T 2woj_A 94 LKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHT 173 (354)
T ss_dssp HHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHH
T ss_pred HHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHH
Confidence 0000 0 0146666432111111 1233433345666676665432 79999999999 430
Q ss_pred h---------------------hhhhh-----------------------------hhhcCCCeEEEEeCCCcchHHHHH
Q 009721 294 D---------------------IQLTL-----------------------------CQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 294 ~---------------------~~~~~-----------------------------~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
. ....+ .....+|.+++|++|+..++.++.
T Consensus 174 LrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~ 253 (354)
T 2woj_A 174 LRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETE 253 (354)
T ss_dssp HHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHH
Confidence 0 00000 000156889999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccCCC----cccc----ccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEee
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDADG----KRYY----PFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAA 395 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~~~----~~~~----~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~ 395 (527)
++++.++..++++.++|+|++.+.... ...+ ..++..++++.+.++...+..+|. ...
T Consensus 254 r~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~l~~l~~~~~~~~v~~~P~--------------~~~ 319 (354)
T 2woj_A 254 RLIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKYLDQIDELYEDFHVVKMPL--------------CAG 319 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEC--------------CSS
T ss_pred HHHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHHHHHHHHhcCCCCEEEeec--------------CCC
Confidence 999999999999999999998732211 1111 011122333444444444444443 111
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 009721 396 DPCGEVANTFQDLGVCVV 413 (527)
Q Consensus 396 ~p~s~~a~~~~~la~~i~ 413 (527)
+.....+++++++.+.
T Consensus 320 --~~~g~~~l~~la~~l~ 335 (354)
T 2woj_A 320 --EIRGLNNLTKFSQFLN 335 (354)
T ss_dssp --CCCHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHh
Confidence 2245788888888776
No 30
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.87 E-value=8.2e-22 Score=199.87 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=127.5
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
+.+++|+|+|+||||||||+|+|||..||+.|+||++||+|+++ ++..+|+.......... ...+|++.+..
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~~v-------~~~~~L~~~~i 84 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEARLV-------EGFDNLYAMEI 84 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCEEC-------TTCSSEEEEEC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCceee-------cCCCCceeeec
Confidence 34567889999999999999999999999999999999999876 55555553211000000 00011111110
Q ss_pred ------------------------CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-hhhh-----
Q 009721 251 ------------------------GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLC----- 300 (527)
Q Consensus 251 ------------------------~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-~~~~----- 300 (527)
+........+.+......+.++.+.+.+.+||||||||||...... +.+.
T Consensus 85 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~~ 164 (334)
T 3iqw_A 85 DPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEK 164 (334)
T ss_dssp CC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC--
T ss_pred CHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 0000111122344434455566555556899999999999321110 0000
Q ss_pred -----------------------------------------------------hhcCCCeEEEEeCCCcchHHHHHHHHH
Q 009721 301 -----------------------------------------------------QVVPLTAAVIVTTPQKLAFIDVAKGVR 327 (527)
Q Consensus 301 -----------------------------------------------------~~~a~d~viiV~~p~~~s~~~~~~~~~ 327 (527)
.....+.+++|++|+..++.++.+.++
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~ 244 (334)
T 3iqw_A 165 ALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQ 244 (334)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHH
Confidence 011246799999999999999999999
Q ss_pred HHHcCCCCEEEEEEecccccCC--Cc----cccccCCchHHHHHHHhCC-CeEEeccCc
Q 009721 328 MFSKLKVPCIAVVENMCHFDAD--GK----RYYPFGRGSGSQVVQQFGI-PHLFDLPIR 379 (527)
Q Consensus 328 ~l~~~~~~~~gvV~N~~~~~~~--~~----~~~~~~~~~~~~~~~~~g~-~~l~~IP~~ 379 (527)
.+++.++++.|+|+|++.+... .. ..+..++..++++.+.|+. ..+..+|..
T Consensus 245 ~L~~~gi~v~gvVvN~~~~p~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~~pl~ 303 (334)
T 3iqw_A 245 ELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLL 303 (334)
T ss_dssp HHHHTTCCEEEEEEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred HHHHCCCCccEEEECCCcCcccCCcCHHHHHHHHHHHHHHHHHHHhccCCCCEEEecCC
Confidence 9999999999999999874321 10 1112355677888888876 567777754
No 31
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.85 E-value=1.7e-21 Score=197.84 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=130.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc--cCCCCCce----eee-----
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE--MNPEKRTI----IPT----- 240 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~--~~~~~~~i----~~~----- 240 (527)
..++|+|+|+||||||||+|+|||..||++|+||++||+|++ ++++.+||....... ........ .+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 95 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQE 95 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHH
Confidence 346899999999999999999999999999999999999998 677777765421000 00000000 000
Q ss_pred ccCC-----ce-EEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCC-CCChhhh----------------
Q 009721 241 EYLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTGDIQL---------------- 297 (527)
Q Consensus 241 ~~~g-----l~-vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp-~~~~~~~---------------- 297 (527)
...+ ++ +++... ..-...++++.....+.++.+.+.+++|||||||||| |.....+
T Consensus 96 ~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~~ 174 (329)
T 2woo_A 96 MTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGL 174 (329)
T ss_dssp HHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11 121000 0001123444444566777776666899999999999 3320000
Q ss_pred --------h-h------------------------------hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEE
Q 009721 298 --------T-L------------------------------CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIA 338 (527)
Q Consensus 298 --------~-~------------------------------~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~g 338 (527)
. + ......+.+++|++|+..++.++.+.++.++..++++.|
T Consensus 175 ~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~g 254 (329)
T 2woo_A 175 SSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHN 254 (329)
T ss_dssp CSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCE
Confidence 0 0 000013579999999999999999999999999999999
Q ss_pred EEEecccccCC-Ccc----ccccCCchHHHHHHHhCCCeEEeccCc
Q 009721 339 VVENMCHFDAD-GKR----YYPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 339 vV~N~~~~~~~-~~~----~~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
+|+||+.+... ... ....+++.++++.+.|+...+..||..
T Consensus 255 vVvN~~~~p~~~~~~~~~~~~~~q~~~l~~i~~~~~~~~~~~vP~~ 300 (329)
T 2woo_A 255 IVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEELYEDFHVVKVPQV 300 (329)
T ss_dssp EEEEEECCCSSCCCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred EEEeCCcCcccccCHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 99999874211 000 011234567788888876566888864
No 32
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.83 E-value=3.3e-21 Score=196.41 Aligned_cols=205 Identities=16% Similarity=0.150 Sum_probs=116.2
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHH--HCCCcEEEEEeCCCCCCCCccCCCCcc-----------ccccCCC-CCc
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMNPE-KRT 236 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVllID~D~~~~s~~~~lg~~~~-----------~~~~~~~-~~~ 236 (527)
...+.|+|+|+||||||||+|+|||..|| +.|+||++||+|+++ ++..+||.... +...... ...
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~-~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~ 93 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAH-NLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAA 93 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSC-HHHHHHTSCCCSSCEEETTEEEEEEEECCC---
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCC-ChHHHhccccCCCceeccCCCCceEEeeCHHHH
Confidence 33456788889999999999999999999 899999999999865 56666664311 0000000 000
Q ss_pred e---eee-------ccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccC------------CCCEEEEeCCCCCCh
Q 009721 237 I---IPT-------EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTGD 294 (527)
Q Consensus 237 i---~~~-------~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~yD~IIID~pp~~~~ 294 (527)
+ ... ...++..+. ......+++......+.++++.+.+. +||||||||||....
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~t 169 (348)
T 3io3_A 94 MSDLQQQASQYNNDPNDPLKSMM----SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHT 169 (348)
T ss_dssp ------------------------------------------------------------------CCEEEEECSSHHHH
T ss_pred HHHHHHHHHhhcccccccHhHHh----HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHH
Confidence 0 000 000111110 00011112222223455555544433 899999999993221
Q ss_pred hhh-h--------------------------------------------------hhhhcCCCeEEEEeCCCcchHHHHH
Q 009721 295 IQL-T--------------------------------------------------LCQVVPLTAAVIVTTPQKLAFIDVA 323 (527)
Q Consensus 295 ~~~-~--------------------------------------------------~~~~~a~d~viiV~~p~~~s~~~~~ 323 (527)
..+ . .......+.+++|++|+..++.++.
T Consensus 170 LrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~ 249 (348)
T 3io3_A 170 LRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETE 249 (348)
T ss_dssp HHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHH
Confidence 110 0 0000123689999999999999999
Q ss_pred HHHHHHHcCCCCEEEEEEecccccC-C--Cc----cccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 324 KGVRMFSKLKVPCIAVVENMCHFDA-D--GK----RYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~~~~~~-~--~~----~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
++++.+++.++++.|+|+||+.+.. . .. ..+..++..++++.+.|+...+..+|..+
T Consensus 250 r~~~~L~~~gi~v~gvVvN~~~~~~~~~~~~~~~~~r~~~q~~~l~~i~~~~~~~~~~~~pl~~ 313 (348)
T 3io3_A 250 RMIQELMSYNMDVNSIVVNQLLFAEGDDHSCKRCESRWKMQKKYLDQMGELYEDYHLVKMPLLG 313 (348)
T ss_dssp HHHHHHHHTTCCCCEEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCS
T ss_pred HHHHHHHHCCCCccEEEEcCCccccccCccCHHHHHHHHHHHHHHHHHHHHccCCCEEEecCCC
Confidence 9999999999999999999987643 1 10 01123556778888888766778888643
No 33
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.83 E-value=6.1e-20 Score=188.25 Aligned_cols=266 Identities=16% Similarity=0.130 Sum_probs=163.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEc----
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS---- 249 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~---- 249 (527)
+.|.|+++||||||||+|+|||..||++|+||++||+ +++ ++..+||...... .... .+|++.+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~-~l~~~~~~~~~~~--------~~~v-~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEP-VLPLLLEQTLTPD--------PQQI-APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCS-HHHHHHTSCCCSS--------CEEE-ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCC-ChHHhhCCCCCCC--------cccc-cccccccccCHH
Confidence 4567888999999999999999999999999999999 755 6666666532100 0000 11222221
Q ss_pred --------------------cCC---CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhh---------
Q 009721 250 --------------------FGF---SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 297 (527)
Q Consensus 250 --------------------~~~---~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~--------- 297 (527)
.+. .........+......+.++.+...+++||||||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 000 011111233333333455555544557899999999994221000
Q ss_pred --------------------------------------------------------hhhhhcCCCeEEEEeCCCcchHHH
Q 009721 298 --------------------------------------------------------TLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 298 --------------------------------------------------------~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
..........+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 000001125789999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHH
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEV 401 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~ 401 (527)
+.+.++.+++.++++.|+|+|| .+ ..+++.+.|+...+..+|..+. +
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~--~~------------~l~~i~~~F~~~~v~~vpl~~~----------------e--- 277 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS--SQ------------TEGDLSAEFTPLSVTVVPDVTK----------------G--- 277 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC--CS------------CCCCCGGGSTTSCEEECCCCBT----------------T---
T ss_pred HHHHHHHHHHcCCCccEEEEcC--HH------------HHHHHHHhcCCCceEECCCCCh----------------h---
Confidence 9999999999999999999999 11 2345666676666777886421 0
Q ss_pred HHHHHHHHHHHHHHHH-HHhccccceeeeccCccEEEEEecCC----------CceeecChhhhhhCCCCCccccCCCCc
Q 009721 402 ANTFQDLGVCVVQQCA-KIRQQVSTAVIYDKSIKAIKVKVPQS----------DEEFFLHPATVRRNDRSAQSVDEWTGD 470 (527)
Q Consensus 402 a~~~~~la~~i~~~~~-~~~~~v~t~i~~d~~~~~l~v~~~d~----------g~~~~~~~~~LR~~c~ca~c~~~~t~~ 470 (527)
.+.++++.+ .... .. ...+.++++++....+++.+|.. |+++.+.+.+.|++=+=|..
T Consensus 278 --~l~~l~~~l-~~p~~~~-~~~~~~~~i~~~~~~~~l~lP~~~~~~~~l~~~gdeL~v~~g~~rR~i~LP~~------- 346 (374)
T 3igf_A 278 --DWQPLIDAL-PNFVEQA-EQAPKPITIDTHNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGDQRRNIFLPPA------- 346 (374)
T ss_dssp --BCHHHHHHC-CCHHHHH-HHSCCSEEEETTTTEEEEECTTCCGGGCEEEEETTEEEEEETTEEEEEECCTT-------
T ss_pred --HHHHHHHHh-cCccccc-cCCCCCEEEEeccEEEEEECCCCCHHHeEEEEECCeEEEEECCEeecccCCHH-------
Confidence 233333333 1111 11 12345566666667777777643 57888888877776443322
Q ss_pred ccccCCCCCCCcceeEEEEecCeeEEEEcCCCC
Q 009721 471 QKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGF 503 (527)
Q Consensus 471 ~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dgh 503 (527)
+ ..-.+..+...++ .|.|.|-+.|
T Consensus 347 -------L-~~~~v~~A~~~~~-~L~i~~~~~~ 370 (374)
T 3igf_A 347 -------L-SGRPITGAKFQNN-YLIISFLEHH 370 (374)
T ss_dssp -------T-TTCCEEEEEEETT-EEEEEECCC-
T ss_pred -------H-cCCCccccEEECC-EEEEEEehhc
Confidence 1 2344667777765 5889998766
No 34
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.82 E-value=4.2e-20 Score=176.82 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=121.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCcc-CCCCcc----ccccCCCCCceeeeccCCceEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENR----LLEMNPEKRTIIPTEYLGVKLV 248 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~~----~~~~~~~~~~i~~~~~~gl~vl 248 (527)
|+|+|+|.||||||||+|+|||.+|+++|+||+++| +|+...... .+.... +........ .....+..++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~ 76 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQL---DYATVNPYTF 76 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCC---CHHHHCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCC---ChhhcccEEe
Confidence 689999999999999999999999999999999975 554322111 010000 000000000 0000011223
Q ss_pred ccCCCCCccccc-CCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh---hhhhhhcC--CCeEEEEeCCCcchHHHH
Q 009721 249 SFGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ---LTLCQVVP--LTAAVIVTTPQKLAFIDV 322 (527)
Q Consensus 249 ~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~---~~~~~~~a--~d~viiV~~p~~~s~~~~ 322 (527)
+.+........+ ........+.++++.+. ++|||||||||||++... .....+.+ .+.+++|+.+...++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 77 AEPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHA 155 (224)
T ss_dssp SSCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHH
T ss_pred CCCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHH
Confidence 211110000000 00112345666666554 789999999999987421 11111111 135888999998899999
Q ss_pred HHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCchh
Q 009721 323 AKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPT 381 (527)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~~ 381 (527)
.+.++.++..+.++.|+|+||+.... ...++..+.+.+.++.++++.||+++.
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~~------~~~~~~~~~l~~~~~~~vl~~Ip~~~~ 208 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPPG------KRHAEYMTTLTRMIPAPLLGEIPWLAE 208 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSCC------TTHHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCch------hhHHHHHHHHHHHcCCCEEEECCCCcC
Confidence 99999998888999999999975432 112346778888899999999999874
No 35
>3o2g_A Gamma-butyrobetaine dioxygenase; gamma-butyrobetaine hydroxylase, 2-OXOG dioxygenase 1, oxidoreductase, structural genomics; HET: OGA NM2; 1.78A {Homo sapiens} PDB: 3ms5_A* 3n6w_A
Probab=99.75 E-value=5.8e-19 Score=182.74 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=82.0
Q ss_pred eeeccCccEEEEEecCCCceeecChhhhhhCCCCCccccCCCCcccccCCCCCCCcceeEEEEecCeeEEEEcCCCCccc
Q 009721 427 VIYDKSIKAIKVKVPQSDEEFFLHPATVRRNDRSAQSVDEWTGDQKLQYTDVPEDIEPEEIRPMGNYAVSITWPDGFSQI 506 (527)
Q Consensus 427 i~~d~~~~~l~v~~~d~g~~~~~~~~~LR~~c~ca~c~~~~t~~~~~~~~~~~~~i~~~~~~~~g~~al~i~w~Dgh~s~ 506 (527)
+..+...+.+.|.|.| |.+..|++.|||+||||++|+++.|+||++++.++|.++++.+++++| |+|+|.|+|||.|+
T Consensus 9 ~~~~~~~~~l~v~w~d-G~~~~~~~~wLRd~C~c~~c~~~~t~qr~~~~~~i~~~i~~~~~~~~~-~~l~i~w~dgH~s~ 86 (388)
T 3o2g_A 9 AEALDGAHLMQILWYD-EEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDR-KKVYITWPDEHYSE 86 (388)
T ss_dssp EEEETTTTEEEEEETT-SCEEEEEHHHHHHTCCSTTTEEGGGTEECCCGGGCCTTCCCSEEEECS-SEEEEECTTSCEEE
T ss_pred eeecCCCCEEEEEECC-CCeeeeCHHHHHhcCCCccccCccccccccCHhhcCcccccceEEeeC-CEEEEEecCCCceE
Confidence 4456678899999999 898999999999999999999999999999999999999999999997 89999999999999
Q ss_pred CChHHHHhc
Q 009721 507 APYDQLQTM 515 (527)
Q Consensus 507 y~~~~L~~~ 515 (527)
|+|+||++.
T Consensus 87 y~~~~L~~~ 95 (388)
T 3o2g_A 87 FQADWLKKR 95 (388)
T ss_dssp EEHHHHHHT
T ss_pred eCHHHHHhh
Confidence 999999986
No 36
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.73 E-value=2.3e-18 Score=188.46 Aligned_cols=196 Identities=17% Similarity=0.138 Sum_probs=118.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC--
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF-- 252 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~-- 252 (527)
.|.|+|+||||||||+|+|||..||++|+||++||+|++ +++..+||.+...... .-....|+.......
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~~-------~v~~~~~l~~~~~d~~~ 80 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQ-------AIASVPGLSALEIDPQA 80 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSCE-------ECTTSTTEEEEECCHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCCc-------eeccchhhhhccCCHHH
Confidence 456888999999999999999999999999999999996 6888877765321000 000112222221100
Q ss_pred ----------------CCCc-----ccccCCcc-----HHHHHHHHHH--hcccCCCCEEEEeCCCCCChhhhh------
Q 009721 253 ----------------SGQG-----RAIMRGPM-----VSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT------ 298 (527)
Q Consensus 253 ----------------~~~~-----~~~~~~~~-----~~~~l~~ll~--~~~~~~yD~IIID~pp~~~~~~~~------ 298 (527)
.... ...+.++. ....+.++++ .+ +.+||||||||||+.....+.
T Consensus 81 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l-~~~yD~VIiDt~P~~~~lrll~lP~~~ 159 (589)
T 1ihu_A 81 AAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASL-LTRFDHIIFDTAPTGHTIRLLQLPGAW 159 (589)
T ss_dssp HHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTH-HHHCSEEEESSCCCHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhh-cccCCEEEECCCCchhHHHHHHhHHHH
Confidence 0000 00011110 1223455554 22 367999999999963211100
Q ss_pred --------------------------------hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 299 --------------------------------LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 299 --------------------------------~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.......+.+++|++|+..++.++.+.++.++..++++.|+|+|++..
T Consensus 160 ~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 160 SSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp TCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 000111236899999999999999999999999999999999999764
Q ss_pred cCC--Cccc----cccCCchHHHHHHHhCCCeEEeccCc
Q 009721 347 DAD--GKRY----YPFGRGSGSQVVQQFGIPHLFDLPIR 379 (527)
Q Consensus 347 ~~~--~~~~----~~~~~~~~~~~~~~~g~~~l~~IP~~ 379 (527)
... ...+ +..+++.++++.+.|+...+..+|..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~vPl~ 278 (589)
T 1ihu_A 240 KTEAANDTLAAAIWEREQEALANLPADLAGLPTDTLFLQ 278 (589)
T ss_dssp GGGGSSCHHHHHHHHHHHHHHHTCCHHHHTSCEEEEECC
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHhccCCCEEEecCC
Confidence 422 0000 01112233444455555556666654
No 37
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.72 E-value=2.9e-18 Score=187.62 Aligned_cols=205 Identities=19% Similarity=0.175 Sum_probs=122.8
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc-cccc--cCCC------CCceeeec
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLE--MNPE------KRTIIPTE 241 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~-~~~~--~~~~------~~~i~~~~ 241 (527)
.++++|+|+++||||||||+|+|||..|+++|+||++||+|+++ ++..+++... .+.. .... ...+.+..
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~-~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA-HLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc-cHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999995 5666665421 1100 0000 00011111
Q ss_pred cCCceEEccCCCCCcccccCCccH--HHHHHHHHHhcccCCCCEEEEeCCCCCChh--------------------h--h
Q 009721 242 YLGVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTGDI--------------------Q--L 297 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--------------------~--~ 297 (527)
..+++ ..+. ..-...+..+.. ...++++.+.+.+.+||||||||||+.... . .
T Consensus 403 ~~~l~--~~~~-~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELD--EAGK-RLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCC--HHHH-HHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCC--hhhH-HHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 11111 0000 000011222221 234566655554568999999999983211 0 0
Q ss_pred hh---hhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcc-c----cccCCchHHHHHHHhC
Q 009721 298 TL---CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKR-Y----YPFGRGSGSQVVQQFG 369 (527)
Q Consensus 298 ~~---~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~-~----~~~~~~~~~~~~~~~g 369 (527)
.. .....++.+++|++|+..++.++.+.++.++..++++.|+|+|++...+.... + ...+.+.++++.+.|+
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 559 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQHA 559 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 00114589999999999999999999999999999999999999876532110 0 0112345667777787
Q ss_pred CCeEEeccCch
Q 009721 370 IPHLFDLPIRP 380 (527)
Q Consensus 370 ~~~l~~IP~~~ 380 (527)
.++ ..||+.+
T Consensus 560 ~~v-~~iP~~~ 569 (589)
T 1ihu_A 560 SRV-ALVPVLA 569 (589)
T ss_dssp SSE-EEEECCS
T ss_pred CcE-EEccCCC
Confidence 654 7888754
No 38
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.70 E-value=2.1e-18 Score=180.61 Aligned_cols=243 Identities=19% Similarity=0.216 Sum_probs=145.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+++++.+.|+++..-.+..|| +...|++.|+-...+.++. .-.+++.... +.+.+.|..+-+.....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~l~~~l~~~~~~ 92 (433)
T 2xxa_A 20 GRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVN---KSLTPGQEFV----KIVRNELVAAMGEENQT 92 (433)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCC---SSSCTTTTTH----HHHHHHHHHHHCSSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccccc---ccCChHHHHH----HHHHHHHHHHhcccccc
Confidence 456888899999999888777666 5566777664322212221 1112222233 33444443322211000
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCCCCCCCCccCCCCcccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~~~~s~~~~lg~~~~~~ 228 (527)
+. ...+.+++|+|+ ++||+||||++++||.+|+++ |+||++||+|+|++.....+.
T Consensus 93 ~~----------------~~~~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------ 149 (433)
T 2xxa_A 93 LN----------------LAAQPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------ 149 (433)
T ss_dssp CC----------------CCSSSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------
T ss_pred cc----------------ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------
Confidence 00 012345789988 799999999999999999999 999999999999876422110
Q ss_pred ccCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCCh--hhhh----hhhh
Q 009721 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQV 302 (527)
Q Consensus 229 ~~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~--~~~~----~~~~ 302 (527)
......|+++++.+... .....+.+.+..+.+.+||||||||||..+. .... +...
T Consensus 150 ---------~~~~~~~l~v~~~~~~~---------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~ 211 (433)
T 2xxa_A 150 ---------TLAEQVGVDFFPSDVGQ---------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS 211 (433)
T ss_dssp ---------HHHHHHTCEECCCCSSS---------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH
T ss_pred ---------hhcccCCeeEEeCCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh
Confidence 01123578888855321 2233445555555446899999999986653 1111 1113
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 303 ~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
...+.+++|+.+... .++....+.+.. ++++.|+|+|+++..... +....+.+.++.|+.+
T Consensus 212 ~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~--------g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 212 INPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG--------GAALSIRHITGKPIKF 272 (433)
T ss_dssp SCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC--------THHHHHHHHHCCCEEE
T ss_pred hcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH--------HHHHHHHHHHCCCeEE
Confidence 356788888776532 334444445543 456679999997654322 3556788888877543
No 39
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.64 E-value=6e-16 Score=129.38 Aligned_cols=84 Identities=37% Similarity=0.620 Sum_probs=79.3
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEEec
Q 009721 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 153 (527)
Q Consensus 74 ~~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~l~ 153 (527)
|.++++|+++|++|+||+++.|||++|+|++|+++++ ++|.|.|++|+++||..+.|.++++++|.+++|+.+++|++.
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 3678999999999999999999999999999999864 689999999999999999999999999999999999999999
Q ss_pred cCCCc
Q 009721 154 AQPAR 158 (527)
Q Consensus 154 ~~p~~ 158 (527)
++|+.
T Consensus 84 ~~p~W 88 (103)
T 1uwd_A 84 FDPPW 88 (103)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98875
No 40
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.64 E-value=2e-16 Score=133.21 Aligned_cols=85 Identities=27% Similarity=0.526 Sum_probs=80.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHh-hcCCCeeeEEEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVT 151 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L-~~l~gv~~v~V~ 151 (527)
.+.++++|+++|++|+|||++.|||++|+|++|.++++ ++|.|+|++|+|+||..+.|.++++++| .+++|+.+++|+
T Consensus 6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~-~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADEN-NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTT-CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCC-CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35688999999999999999999999999999999864 7899999999999999999999999999 899999999999
Q ss_pred eccCCCc
Q 009721 152 MSAQPAR 158 (527)
Q Consensus 152 l~~~p~~ 158 (527)
++++|+.
T Consensus 85 l~~~p~W 91 (108)
T 3lno_A 85 VVWNPPW 91 (108)
T ss_dssp ECCSSCC
T ss_pred EEecCCC
Confidence 9999885
No 41
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.61 E-value=1.4e-15 Score=127.16 Aligned_cols=82 Identities=27% Similarity=0.564 Sum_probs=78.0
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEEEEecc
Q 009721 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (527)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~V~l~~ 154 (527)
.++++|+++|++|+||+++.|||++|+|++|.+++ +.|.|.|++|+++||..+.|.++++++|.+++|+.+++|++.+
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 36889999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred CCCc
Q 009721 155 QPAR 158 (527)
Q Consensus 155 ~p~~ 158 (527)
+|+.
T Consensus 84 ~p~W 87 (103)
T 3cq1_A 84 EPPW 87 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8875
No 42
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.57 E-value=8.7e-15 Score=145.94 Aligned_cols=242 Identities=16% Similarity=0.189 Sum_probs=145.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+++++.+.|+++.+-.+..|| +...++++++-...+.++ . ++-...+.+.+.+.+.|...-+-....
T Consensus 18 ~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (297)
T 1j8m_F 18 SSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKP------P-TYIERREWFIKIVYDELSNLFGGDKEP 90 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC------C-TTCCHHHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccc------c-ccCChHHHHHHHHHHHHHHHhcccccc
Confidence 345777888888888877766666 555666655421110111 0 111123445555555554433311100
Q ss_pred -EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc
Q 009721 150 -VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (527)
Q Consensus 150 -V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~ 228 (527)
+. +...+++|+++ |++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 91 ~i~-----------------~~~~~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~----- 147 (297)
T 1j8m_F 91 KVI-----------------PDKIPYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ----- 147 (297)
T ss_dssp CCS-----------------CSSSSEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH-----
T ss_pred ccc-----------------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH-----
Confidence 00 11115688887 7999999999999999999999999999999998754321110
Q ss_pred ccCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC--hh-hhh-----hh
Q 009721 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LC 300 (527)
Q Consensus 229 ~~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~--~~-~~~-----~~ 300 (527)
.....|+++++... +......+.++++.+.+.+||||||||||... .. .+. +.
T Consensus 148 ----------~~~~~~v~v~~~~~---------~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~ 208 (297)
T 1j8m_F 148 ----------LGQQIGVPVYGEPG---------EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIY 208 (297)
T ss_dssp ----------HHHHHTCCEECCTT---------CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHH
T ss_pred ----------HhccCCeEEEecCC---------CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHH
Confidence 01123677777432 12233444556655545799999999999776 21 111 11
Q ss_pred hhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 301 QVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 301 ~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
....+|.+++|+.+.. . .++.+.++.+.. +.++.|+|+|+++...+. +....+...++.|+.+
T Consensus 209 ~~~~~d~vllVvda~~-g-~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (297)
T 1j8m_F 209 EAIKPDEVTLVIDASI-G-QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG--------GGALSAVAATGATIKF 271 (297)
T ss_dssp HHHCCSEEEEEEEGGG-G-GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH--------HHHHHHHHTTTCCEEE
T ss_pred HHhcCCEEEEEeeCCc-h-HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch--------HHHHHHHHHHCcCEEE
Confidence 2446789999987753 2 333444455554 467799999997644321 2455677788877655
No 43
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.55 E-value=6.2e-16 Score=160.85 Aligned_cols=241 Identities=19% Similarity=0.171 Sum_probs=147.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+++++.+.|+++....+..|| +...|++.|+....+.++ .. +-...+.+.+.+.+.|...-+-....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~~L~~~~~~~~~~ 92 (425)
T 2ffh_A 20 GRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV------LE-SLTPAEVILATVYEALKEALGGEARL 92 (425)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTG------GG-CSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc------cc-cCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 456888899999999888777776 666777766432211111 11 11123456666666665443321101
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
+. +. .+++|+|+ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 93 i~-----------------l~-~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 93 PV-----------------LK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp CC-----------------CC-SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred cc-----------------CC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 11 11 34688888 7899999999999999999999999999999998754321110
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh--hhh----hhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLT----LCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--~~~----~~~~~ 303 (527)
.....|+++++.+... .....+.+.++.+....||||||||||..+.. ... +....
T Consensus 148 ---------~~~~~gv~v~~~~~~~---------~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ---------HHHHHTCCEEECCTTC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ---------hcccCCccEEecCCCC---------CHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 0122477888754321 12233345555443378999999999976531 111 11223
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
..+.+++|+.+.. . .++...++.+.. .+++.|+|+|+++.+... +....+.+.+|.|+.+
T Consensus 210 ~pd~vlLVvDa~t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~--------g~alsi~~~~g~PI~f 269 (425)
T 2ffh_A 210 GPDEVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (425)
T ss_dssp CCSEEEEEEEGGG-T-THHHHHHHHHHH-HTCCCEEEEESGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred CCceEEEEEeccc-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcccH--------HHHHHHHHHHCCCEEE
Confidence 4688888887653 2 344444444443 355689999997654322 3455677888888654
No 44
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.53 E-value=4.3e-14 Score=142.33 Aligned_cols=171 Identities=19% Similarity=0.200 Sum_probs=104.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+++|+|+|. +|+||||++.+||..++..|++|+++|+|++++.....+ ..... .....+++++|.+
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql------~~~~~------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL------EEWIK------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHH------HHHHT------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHH------HHHHh------ccccCCceEEeCC
Confidence 3579999965 999999999999999999999999999999875421000 00000 0013578888644
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhh------h------cCCCeEEEEeCCCcchH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQ------V------VPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~------~------~a~d~viiV~~p~~~s~ 319 (527)
...... .....+.+.... ..+||||||||||........+.. . ...|.+++|+.... ..
T Consensus 171 ~~~~~p-------~~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 171 KLNADP-------ASVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp STTCCH-------HHHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCCCH-------HHHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 321111 011222222222 379999999999976632111000 1 13578888887662 33
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
..+.++ +.+.. ..++.|+|+|+++....+ +.+..+...++.|+.+
T Consensus 242 ~~l~~~-~~~~~-~~~i~GvVltk~d~~~~~--------g~~~~~~~~~~~Pi~~ 286 (320)
T 1zu4_A 242 NGVIQA-EEFSK-VADVSGIILTKMDSTSKG--------GIGLAIKELLNIPIKM 286 (320)
T ss_dssp HHHHHH-HHHTT-TSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEE
T ss_pred HHHHHH-HHHhh-cCCCcEEEEeCCCCCCch--------hHHHHHHHHHCcCEEE
Confidence 333333 33332 356789999997654322 3566788888988654
No 45
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.50 E-value=6.5e-14 Score=139.61 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=107.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+++|+++ +++|+||||++.+||..++..|.+|+++|+|++++.....++. .....|+++++.+
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~---------------~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL---------------LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH---------------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH---------------hcccCCeEEEEcC
Confidence 45789998 8999999999999999999999999999999988654321110 0122467788754
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhh------hhcCCCeEEEEeCCCcchHHHHHHH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLC------QVVPLTAAVIVTTPQKLAFIDVAKG 325 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~------~~~a~d~viiV~~p~~~s~~~~~~~ 325 (527)
... .....++..++.+...+||||||||||..+.....+. .....+.+++|+.+.. . .++.+.
T Consensus 161 ~~~---------~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGE---------SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTC---------CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCC---------CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 321 1122234444443236899999999997653111111 1224678888877653 2 333333
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
++.+.. ..++.|+|+|+++..... +..-.+...++.|+.+
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~~~--------g~~~~~~~~~~~pi~~ 269 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDARG--------GAALSARHVTGKPIYF 269 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCSSC--------HHHHHHHHHHCCCEEE
T ss_pred HHHHhh-cCCCCEEEEECCCCCccH--------HHHHHHHHHHCcCEEE
Confidence 444443 356789999997654322 3456777888887765
No 46
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.48 E-value=6.3e-15 Score=153.45 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=142.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+++++.+.|+++.+..+..|| +...|+.+++......++ ..+-...+.+.+.+++.|..+-+....
T Consensus 21 ~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v-------~~~~~~~~~v~~~l~~eL~~~L~~~~~- 92 (443)
T 3dm5_A 21 SSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKP-------PAGISKKEHIIKIVYEELTKFLGTEAK- 92 (443)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-------CTTCCHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccc-------cccCCcHHHHHHHHHHHHHHHhcCccc-
Confidence 346788999999999988777776 445566655432110111 111123445666777777654331100
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
.. .....+++|+++ |.+|+||||++.+||.+|+++|+||+++|+|++++.....+.
T Consensus 93 -------~~---------~~~~~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~------- 148 (443)
T 3dm5_A 93 -------PI---------EIKEKPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR------- 148 (443)
T ss_dssp -------CC---------CCCSSSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH-------
T ss_pred -------cc---------ccCCCCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH-------
Confidence 00 011234688887 559999999999999999999999999999998864211100
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h----hhhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~----~~~~~~ 303 (527)
......++.+...... ......+...++.+...+||+|||||++...... . .+....
T Consensus 149 --------~~~~~~gvpv~~~~~~---------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~ 211 (443)
T 3dm5_A 149 --------QLLDRYHIEVFGNPQE---------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211 (443)
T ss_dssp --------HHHGGGTCEEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHhcCCcEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh
Confidence 0011224555442211 2233444455555544679999999998543211 1 112233
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
..|.+++|+.+.. . .++....+.|.+ ..++.|+|+|+++...++ +....+...++.|+.+
T Consensus 212 ~pd~vlLVvDA~~-g-q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g--------G~~ls~~~~~g~PI~f 271 (443)
T 3dm5_A 212 HPHEVILVIDGTI-G-QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG--------GGALSAVAATGAPIKF 271 (443)
T ss_dssp CCSEEEEEEEGGG-G-GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH--------HHHHHHHHTTCCCEEE
T ss_pred cCceEEEEEeCCC-c-hhHHHHHHHHHh-hCCCeEEEEECCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 4688888877654 2 233344455554 345689999997654322 3455666778887654
No 47
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.43 E-value=3.1e-14 Score=151.12 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=138.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...++++|.++|+++..-.+..|| +...+++.|+....+..+ .. +-...+.+.+.+++.|..+-+.....
T Consensus 21 ~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~-~~~~~~~~~~~v~~eL~~ll~~~~~~ 93 (504)
T 2j37_W 21 TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEM------AS-GLNKRKMIQHAVFKELVKLVDPGVKA 93 (504)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCCC------CS-SSCHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCcc------cc-cCChHHHHHHHHHHHHHHHhccccch
Confidence 346788888888888777666665 556666655421110111 11 11123456667777776653321100
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
+. ......++|+|+ +.+||||||++.+||.+|+++|+||++||+|++++.....+..
T Consensus 94 ~~----------------~~~~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~------ 150 (504)
T 2j37_W 94 WT----------------PTKGKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQ------ 150 (504)
T ss_dssp CC----------------CCSS--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHH------
T ss_pred hc----------------cccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHH------
Confidence 00 001234688888 6799999999999999999999999999999998754221110
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh--hh----hhhhhc
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL----TLCQVV 303 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~--~~----~~~~~~ 303 (527)
.....++.+++.... ......+.+.+..+.+.+|||||||||+..... .. ......
T Consensus 151 ---------~~~~~~i~v~~~~~~---------~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i 212 (504)
T 2j37_W 151 ---------NATKARIPFYGSYTE---------MDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI 212 (504)
T ss_dssp ---------HHHHHTCCEEECCCC---------SCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred ---------HhhccCceEEccCCC---------CCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhh
Confidence 001124555553221 112233344444444579999999999976421 11 011123
Q ss_pred CCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeE
Q 009721 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHL 373 (527)
Q Consensus 304 a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l 373 (527)
..|.+++|+.+... .. .....+.+.+. +++.++|+|+++..... +....+.+.+|.|+.
T Consensus 213 ~pd~vllVvDa~~g-~~-~~~~a~~~~~~-~~i~gvVlNK~D~~~~~--------g~~l~~~~~~g~PI~ 271 (504)
T 2j37_W 213 QPDNIVYVMDASIG-QA-CEAQAKAFKDK-VDVASVIVTKLDGHAKG--------GGALSAVAATKSPII 271 (504)
T ss_dssp CCSEEEEEEETTCC-TT-HHHHHHHHHHH-HCCCCEEEECTTSCCCC--------THHHHHHHHHCCCEE
T ss_pred cCceEEEEEecccc-cc-HHHHHHHHHhh-cCceEEEEeCCccccch--------HHHHHHHHHhCCCeE
Confidence 56888888876542 11 22334444432 55568999997654322 234457778888764
No 48
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.43 E-value=2.2e-13 Score=130.61 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=117.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCC--CccccccCCCCCceeeeccCCceEEc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP--ENRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~--~~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
.|+.|.|++...|+||||++++|+..|+++|+||..+-.=..++... --+. .+......... .+....+...+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KPv~~g~~~~-~~~~~~~D~~~~~~~~~---~~~~~~~~~~~~ 78 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKPVASGQSQF-SELCEDVESILNAYKHK---FTAAEINLISFN 78 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECSEEESBCSS-SSSBHHHHHHHHHTTTS---SCHHHHCSEEES
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecceeecCccC-CCCCChHHHHHHhcCCC---CChhhEEEEEEC
Confidence 46889999999999999999999999999999999964110110000 0000 00000000000 000111233343
Q ss_pred cCCCCCcccccCC-ccHHHHHHHHHHh-cccCCCCEEEEeCCCCCChhh------hhhhhhcCCCeEEEEeCCCcchHHH
Q 009721 250 FGFSGQGRAIMRG-PMVSGVINQLLTT-TEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 250 ~~~~~~~~~~~~~-~~~~~~l~~ll~~-~~~~~yD~IIID~pp~~~~~~------~~~~~~~a~d~viiV~~p~~~s~~~ 321 (527)
............+ ......+.+.++. +. .+||+||||+++|+.... ..++.. ...-+++|+.+...++..
T Consensus 79 ~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~-l~~pviLV~~~~~~~i~~ 156 (228)
T 3of5_A 79 QAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKA-LQIPVLLVSAIKVGCINH 156 (228)
T ss_dssp SSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHH-HTCCEEEEEECSTTHHHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHH-cCCCEEEEEcCCcchHHH
Confidence 2221111111111 1122345555555 43 799999999998765321 111111 124588999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEecc
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLP 377 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP 377 (527)
+...++.++..+.++.|+|+|++..+.. ...+..+.+++.+|.++++.||
T Consensus 157 ~~~~~~~l~~~~~~i~GvIlN~~~~~~~------~~~~~~~~l~~~~g~pvLG~iP 206 (228)
T 3of5_A 157 TLLTINELNRHNIKLAGWIANCNDSNIK------YIDEQINTIEELSGYKCSAKIS 206 (228)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECCTTCS------CHHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHhCCCcEEEEEEECcCCcch------hhHHHHHHHHHhhCCCEEEECC
Confidence 9999999988999999999999653321 1124577888889999999999
No 49
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.41 E-value=6.4e-14 Score=145.88 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=143.6
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeEE
Q 009721 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (527)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v~ 149 (527)
...+++++.++|+++.+..+..|| +...|+++|+....+.++ ..+-...+.+.+.+.+.|..+.+...
T Consensus 17 ~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~v~~~v~~eL~~~L~~~~-- 87 (433)
T 3kl4_A 17 STPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP-------PSVLERKEWFISIVYDELSKLFGGDK-- 87 (433)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC-------CTTCCHHHHHHHHHHHHHHHHHCSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccc-------cccCChHHHHHHHHHHHHHHhcCccc--
Confidence 456889999999999999887777 666677666532210111 11222355667777777765432110
Q ss_pred EEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccc
Q 009721 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (527)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~ 229 (527)
+.. ......+++|+++ |.+|+||||++.+||..|++.|++|+++|+|++++.....+
T Consensus 88 ------~~~--------~~~~~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL-------- 144 (433)
T 3kl4_A 88 ------EPN--------VNPTKLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQL-------- 144 (433)
T ss_dssp ------CCC--------CSCCSSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHH--------
T ss_pred ------ccc--------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHH--------
Confidence 000 0111234677777 88999999999999999999999999999998875321100
Q ss_pred cCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCC---hhh-----hhhhh
Q 009721 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQ-----LTLCQ 301 (527)
Q Consensus 230 ~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~---~~~-----~~~~~ 301 (527)
.......++.+..... +..........+..+.+.+||+||||||+... +.. ..+..
T Consensus 145 -------~~~~~~~gv~~~~~~~---------~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 145 -------LQLGNQIGVQVYGEPN---------NQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp -------HHHHHTTTCCEECCTT---------CSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred -------HHHHHhcCCceeeccc---------cCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 0001112333333211 11233444555666655799999999998544 111 11111
Q ss_pred hcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 302 ~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
....+.+++|+..... .++....+.|.+ ..++.|+|+|+++.+.++ +..-.+...++.|+.+
T Consensus 209 ~~~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~--------G~als~~~~~g~Pi~f 270 (433)
T 3kl4_A 209 VLKPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG--------GGALSAVVATGATIKF 270 (433)
T ss_dssp HHCCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH--------HHHHHHHHHHTCEEEE
T ss_pred hhCCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc--------hHHHHHHHHHCCCEEE
Confidence 2244778888766432 233344455553 234589999997655322 3455667778887654
No 50
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.40 E-value=4.1e-12 Score=132.88 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=103.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
+++|+|++ .+|+||||++.+||..++++|+||+++|+|+|++.....+.. .....|+.+++.+.
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~~ 162 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDET 162 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecCC
Confidence 35788885 699999999999999999999999999999998765322110 01224677776541
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h----hhhhhcCCCeEEEEeCCCcchHHHHHHHH
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~----~~~~~~a~d~viiV~~p~~~s~~~~~~~~ 326 (527)
...+ + ...+.+.+..+ ..||+||||||+...... . .+......|.+++|+.+... . ++....
T Consensus 163 ~~~d------p--~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g-~-~~~~~~ 230 (432)
T 2v3c_C 163 RTKS------P--VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIG-Q-QAGIQA 230 (432)
T ss_dssp SCCS------S--STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGG-G-GHHHHH
T ss_pred CCCC------H--HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeecccc-H-HHHHHH
Confidence 1111 0 01123444443 689999999999765211 1 11122346888888765432 1 333344
Q ss_pred HHHHcCCC-CEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 327 RMFSKLKV-PCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 327 ~~l~~~~~-~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
+.+.. +. ++.++|+|+++..... +....+.+.++.|+.+
T Consensus 231 ~~~~~-~~~~i~gvVlnK~D~~~~~--------g~~l~~~~~~~~pi~~ 270 (432)
T 2v3c_C 231 KAFKE-AVGEIGSIIVTKLDGSAKG--------GGALSAVAETKAPIKF 270 (432)
T ss_dssp HHHHT-TSCSCEEEEEECSSSCSTT--------HHHHHHHHHSSCCEEE
T ss_pred HHHhh-cccCCeEEEEeCCCCccch--------HHHHHHHHHHCCCEEE
Confidence 44543 35 6789999997644322 2344578888887654
No 51
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.37 E-value=4.5e-13 Score=130.77 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=42.6
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~ 218 (527)
.+..+++++++||||||||++.|||..|+ .|+||++||+|+|.+.+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 44568999999999999999999999999 999999999999987653
No 52
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.29 E-value=1.5e-11 Score=119.28 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=115.9
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEc
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~ 249 (527)
.+.|+.|.|++...|||||++++.|+.+|+++|+||..+-.=..+.. .. +.+........ . +... .+...+.
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~-~~--~~D~~~~~~~~--g-~~~~--~~~~~~~ 94 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTA-RG--DDDLAEVGRLA--G-VTQL--AGLARYP 94 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGG-GT--CCHHHHHHHHH--C-CCEE--EEEEECS
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCC-CC--CHHHHHHHHHc--C-CCCC--CCCeeEC
Confidence 35678999999999999999999999999999999999863111100 00 00000000000 0 0000 1122222
Q ss_pred cCCCCCcccccCCc--cHHHHHHHHHHhcccCCCCEEEEeCCCCCChh---h-hhhhhh--cCCCeEEEEeCCCcchHHH
Q 009721 250 FGFSGQGRAIMRGP--MVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---Q-LTLCQV--VPLTAAVIVTTPQKLAFID 321 (527)
Q Consensus 250 ~~~~~~~~~~~~~~--~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~---~-~~~~~~--~a~d~viiV~~p~~~s~~~ 321 (527)
............+. .....+.+.++.+. .+||+||||+++|+... . .....+ ....-+++|+.+...++..
T Consensus 95 ~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~ 173 (251)
T 3fgn_A 95 QPMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNH 173 (251)
T ss_dssp SSSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHH
T ss_pred CCCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHH
Confidence 11110001111111 12334556665554 78999999999987421 0 111111 1246689999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccCch
Q 009721 322 VAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRP 380 (527)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~~~ 380 (527)
+...++.+...+.++.|+|+|++..+... . .....+.+++. .|+++.||++.
T Consensus 174 ~~lt~~~l~~~g~~i~GvIlN~v~~~~~~-~----~~~~~~~le~~--vpvLG~iP~~~ 225 (251)
T 3fgn_A 174 TKLTLEALAAQQVSCAGLVIGSWPDPPGL-V----AASNRSALARI--AMVRAALPAGA 225 (251)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEECSSCCH-H----HHHHHHHHHHH--SCEEEEEETTG
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCCchhh-h----hhhHHHHHHHh--CCEEEEeeCCC
Confidence 98999999888999999999996422211 0 11234444444 99999999875
No 53
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.27 E-value=4.2e-11 Score=119.59 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=101.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+++|+|++. +|+||||++.+||..++..|++|+++|+|.+++.... .+. ......++.+++..
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~---------~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLK---------IWGERVGATVISHS 166 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHH---------HHHHHHTCEEECCS
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHH---------HHHHHcCCcEEecC
Confidence 4579999965 9999999999999999999999999999998743210 000 00011255666532
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhh------hhhh------cCCCeEEEEeCCCcchH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT------LCQV------VPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~------~~~~------~a~d~viiV~~p~~~s~ 319 (527)
. +......+...+......+||+||||+|+........ +... ...+.+++|+... ...
T Consensus 167 s---------~~~~~~v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~ 236 (306)
T 1vma_A 167 E---------GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQ 236 (306)
T ss_dssp T---------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHH
T ss_pred C---------ccCHHHHHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCH
Confidence 1 1112222222222222378999999999854321100 0001 1256778887654 333
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
..+..+ +.+.+ ..++.|+|+|+++....+ +.+..+...++.|+.+.
T Consensus 237 ~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~g--------G~~l~~~~~~~~Pi~~i 282 (306)
T 1vma_A 237 NGLVQA-KIFKE-AVNVTGIILTKLDGTAKG--------GITLAIARELGIPIKFI 282 (306)
T ss_dssp HHHHHH-HHHHH-HSCCCEEEEECGGGCSCT--------THHHHHHHHHCCCEEEE
T ss_pred HHHHHH-HHHHh-cCCCCEEEEeCCCCccch--------HHHHHHHHHHCCCEEEE
Confidence 333333 33333 255689999997654433 45778888999887664
No 54
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.24 E-value=8.9e-11 Score=113.14 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=115.2
Q ss_pred cccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccccc----CCCCCceeeec
Q 009721 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NPEKRTIIPTE 241 (527)
Q Consensus 166 ~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~----~~~~~~i~~~~ 241 (527)
..++..|++.|.|++...|||||++++.|+.+|+++|+||..+-. ........-+........ ......+.. .
T Consensus 14 ~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP--v~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~-~ 90 (242)
T 3qxc_A 14 RENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP--IETGVNDAINHSSDAHLFLQDNRLLDRSLTL-K 90 (242)
T ss_dssp -----CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC--EECSCCTTTCCCSHHHHHHHHHHTTCTTCCH-H
T ss_pred hhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee--eecCCcccCCCCchHHHHHHHHHHHhCCCCh-H
Confidence 457788999999999999999999999999999999999999852 111110000000000000 000000000 0
Q ss_pred cCCceEEccCCCCCcccccCC---ccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh------hhhhhhcCCCeEEEEe
Q 009721 242 YLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ------LTLCQVVPLTAAVIVT 312 (527)
Q Consensus 242 ~~gl~vl~~~~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~------~~~~~~~a~d~viiV~ 312 (527)
.-+...+.............+ ......+.+.++.+. ..||+||||+++|+.... ..++.. ...-+++|+
T Consensus 91 ~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~-l~~pVILV~ 168 (242)
T 3qxc_A 91 DISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALK-LKAKMLLIS 168 (242)
T ss_dssp HHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHH-HTCEEEEEE
T ss_pred HeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHH-cCCCEEEEE
Confidence 001122211111000000011 112234555555544 789999999999875421 111111 124588999
Q ss_pred CCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHh---CCCeEEeccCchhHHhcccC
Q 009721 313 TPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQF---GIPHLFDLPIRPTLSASGDS 388 (527)
Q Consensus 313 ~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~l~~IP~~~~i~~a~~~ 388 (527)
.+...++..+...++.++..+++ .|+|+|++..+. .+.. .....+++.+ ..+++..+|.-+.+.++...
T Consensus 169 ~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~---~~~~---~~~p~le~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (242)
T 3qxc_A 169 HDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT---AFHS---ISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK 240 (242)
T ss_dssp CCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC---HHHH---HTHHHHHHHHHHCSSCCEEGGGCHHHHHHHHHS
T ss_pred cCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc---chhh---hhHHHHHHhcCcccCCceeccccHHHHHHHHhc
Confidence 99999999999999999999999 999999965432 1111 1222233333 34556666655555544433
No 55
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.20 E-value=4.1e-12 Score=108.16 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=64.5
Q ss_pred cHHHHHHHhccCCCCCCCCCccccCCeeEEEEe-----cCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhc-CCCeeeEE
Q 009721 76 AENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN-----EALGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKVN 149 (527)
Q Consensus 76 ~~~~v~~~L~~V~dPel~~div~lglI~~v~i~-----~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~-l~gv~~v~ 149 (527)
.+++|+++|++|+|||++.++++||+|+++.+. ++++.|.|.|++|.|+||++..|...++..|.. +++.-+++
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 578899999999999999999999999997663 223679999999999999999999999999965 66654444
Q ss_pred EE
Q 009721 150 VT 151 (527)
Q Consensus 150 V~ 151 (527)
+.
T Consensus 89 v~ 90 (130)
T 3ux2_A 89 IY 90 (130)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 56
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.05 E-value=4.4e-10 Score=111.83 Aligned_cols=160 Identities=18% Similarity=0.149 Sum_probs=93.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
+++|+|+ |.+|+||||++.+||..++. .|++|+++|+|++++.....+.. . ....|+.+...
T Consensus 105 g~vi~lv-G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~------~---------~~~~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLF-GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT------Y---------AELLQAPLEVC- 167 (296)
T ss_dssp SSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH------H---------HTTTTCCCCBC-
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH------H---------HHhcCCCeEec-
Confidence 4688988 45999999999999999995 89999999999986543111100 0 00012221110
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h-hhhhhc---CCCeEEEEeCCCcchHHHHHHH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVV---PLTAAVIVTTPQKLAFIDVAKG 325 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~-~~~~~~---a~d~viiV~~p~~~s~~~~~~~ 325 (527)
.. . ..+...+..+ .+||+|||||++...... + .+..+. ..+.+++|+... ....++.+.
T Consensus 168 ---------~~--~-~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~~ 232 (296)
T 2px0_A 168 ---------YT--K-EEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKHI 232 (296)
T ss_dssp ---------SS--H-HHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHHH
T ss_pred ---------CC--H-HHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHHH
Confidence 00 0 1233444433 689999999988554221 1 111122 245556665322 234455555
Q ss_pred HHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
.+.+.. ++..++|+|+++..... +....+...+|.|+.+
T Consensus 233 ~~~~~~--l~~~giVltk~D~~~~~--------g~~~~~~~~~~~pi~~ 271 (296)
T 2px0_A 233 VKRFSS--VPVNQYIFTKIDETTSL--------GSVFNILAESKIGVGF 271 (296)
T ss_dssp TTTTSS--SCCCEEEEECTTTCSCC--------HHHHHHHHTCSCCCSE
T ss_pred HHHHhc--CCCCEEEEeCCCcccch--------hHHHHHHHHHCcCEEE
Confidence 555543 44579999997544322 3556677778877654
No 57
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.81 E-value=1.1e-08 Score=104.36 Aligned_cols=150 Identities=18% Similarity=0.137 Sum_probs=81.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCcc-CCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~-lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
..+|+|+ |++|+||||++.+|+..++..|+||+++|+|++.+..... ++.... .......+++.+.+.+
T Consensus 79 ~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~---------~~~~~~~~~~~i~~~~ 148 (355)
T 3p32_A 79 AHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTR---------MARLAVHPNAYIRPSP 148 (355)
T ss_dssp SEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------------CHHHHTCTTEEEECCC
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhh---------HHhhccCCCeeEEECC
Confidence 4567776 8899999999999999999999999999999987642211 110000 0001123466666644
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHc
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (527)
...... .........+..+...+||++|||||+ ++.....+ ...+|.+++|+.++..... ..+...+
T Consensus 149 ~~~~~~------~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~-- 215 (355)
T 3p32_A 149 TSGTLG------GVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV-- 215 (355)
T ss_dssp --CCHH------HHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS--
T ss_pred CCcccc------chhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH--
Confidence 321110 111222233333344789999999975 55443333 3567999999887653211 0000000
Q ss_pred CCCCEEEEEEecccc
Q 009721 332 LKVPCIAVVENMCHF 346 (527)
Q Consensus 332 ~~~~~~gvV~N~~~~ 346 (527)
.+.+ ..+|+|+++.
T Consensus 216 ~~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 216 LELA-DIVVVNKADG 229 (355)
T ss_dssp GGGC-SEEEEECCCG
T ss_pred hhcC-CEEEEECCCC
Confidence 1223 4678899764
No 58
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.69 E-value=1.8e-08 Score=95.15 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=41.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
++...|+++||||||||++.++|..++++|++|+++|+|+|++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~ 49 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAE 49 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChh
Confidence 467788899999999999999999999999999999999998653
No 59
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.64 E-value=2.5e-08 Score=100.46 Aligned_cols=249 Identities=17% Similarity=0.194 Sum_probs=138.2
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCeeeE
Q 009721 72 STGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (527)
Q Consensus 72 ~~~~~~~~v~~~L~~V~dPel~~di---v~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~l~~~i~~~L~~l~gv~~v 148 (527)
....+++++.+.|+++.+..+..|| +...++.+|+-.-.+.++.-.. . ..+.+.+.+++.+..+-+-..
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~l~~~l~~~l~~~~- 115 (328)
T 3e70_C 44 TVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGT---D----KGKIIEEAVKEAVSEILETSR- 115 (328)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC----------CHHHHHHHHHHHHHHSCCSS-
T ss_pred hccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCcc---C----HHHHHHHHHHHHHHHHhCCcc-
Confidence 3567899999999999888887777 6677777776433212222111 1 234566666666665432110
Q ss_pred EEEeccCCCchhhhccccccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCcccc
Q 009721 149 NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (527)
Q Consensus 149 ~V~l~~~p~~~~~~~~~~~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~ 228 (527)
.+.+. .. ......+.+|++. |..|+||||+...||..+...|.+|++++.|.+.......
T Consensus 116 ~~~~~------~~-----~~~~~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eq-------- 175 (328)
T 3e70_C 116 RIDLI------EE-----IRKAEKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQ-------- 175 (328)
T ss_dssp CCCHH------HH-----HHSSCSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHH--------
T ss_pred ccchh------hh-----cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHH--------
Confidence 01100 00 0011235688888 6699999999999999999999999999999876431100
Q ss_pred ccCCCCCceeeeccCCceEEccCCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h----hhhhh
Q 009721 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQV 302 (527)
Q Consensus 229 ~~~~~~~~i~~~~~~gl~vl~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~----~~~~~ 302 (527)
.......-++.+++...... ....+.+.+.......||++++|+++...... + .+...
T Consensus 176 -------l~~~~~~~gv~~v~q~~~~~---------p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra 239 (328)
T 3e70_C 176 -------LEEHAKRIGVKVIKHSYGAD---------PAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239 (328)
T ss_dssp -------HHHHHHHTTCEEECCCTTCC---------HHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHH
T ss_pred -------HHHHHHHcCceEEeccccCC---------HHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHH
Confidence 00001112444444221111 11111121111112579999999987643211 0 11122
Q ss_pred cCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 303 ~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
...|..+++..+... .++...++.+.+ ...+.++|+|+.+..... +..-.+...++.|+.+.
T Consensus 240 l~~de~llvLDa~t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~~--------G~~l~~~~~~~~pi~~i 301 (328)
T 3e70_C 240 TKPNLVIFVGDALAG--NAIVEQARQFNE-AVKIDGIILTKLDADARG--------GAALSISYVIDAPILFV 301 (328)
T ss_dssp HCCSEEEEEEEGGGT--THHHHHHHHHHH-HSCCCEEEEECGGGCSCC--------HHHHHHHHHHTCCEEEE
T ss_pred hcCCCCEEEEecHHH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccch--------hHHHHHHHHHCCCEEEE
Confidence 345777777764332 344444444442 133468999996643322 34567778888876653
No 60
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.45 E-value=6e-07 Score=94.32 Aligned_cols=167 Identities=17% Similarity=0.215 Sum_probs=93.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+.+|+|+ |..|+||||+...||..+...|.+|++.+.|.++..... .+. ......++.+++-.
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~---------~~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQ---------VWGQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHH---------HHHHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHH---------HHHHhcCceEEecc
Confidence 45789988 779999999999999999988999999999986521000 000 00000133334311
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-hh--hhhh---------cCCCeEEEEeCCCcchH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LT--LCQV---------VPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-~~--~~~~---------~a~d~viiV~~p~~~s~ 319 (527)
... .....+.+.+......+||+|||||.+...... +. +..+ ..-+.++++..+...
T Consensus 356 ~~~---------~p~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-- 424 (503)
T 2yhs_A 356 TGA---------DSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-- 424 (503)
T ss_dssp TTC---------CHHHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--
T ss_pred cCc---------CHHHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--
Confidence 110 111122222222223689999999988653211 10 0001 013456777665432
Q ss_pred HHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEE
Q 009721 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLF 374 (527)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 374 (527)
.++...++.|.+ ...+.++|+|+.+...++ +.+-.+...++.|+.+
T Consensus 425 q~al~~ak~f~~-~~~itgvIlTKLD~takg--------G~~lsi~~~~~~PI~f 470 (503)
T 2yhs_A 425 QNAVSQAKLFHE-AVGLTGITLTKLDGTAKG--------GVIFSVADQFGIPIRY 470 (503)
T ss_dssp HHHHHHHHHHHH-HTCCSEEEEECGGGCSCC--------THHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCCCcccc--------cHHHHHHHHHCCCEEE
Confidence 233333444443 123468999997643322 4667788888888766
No 61
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.35 E-value=3.5e-06 Score=85.36 Aligned_cols=126 Identities=15% Similarity=0.174 Sum_probs=67.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-ccCCCCccccccCCCCCceeeeccCCceEEcc
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~-~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~ 250 (527)
...+|+++ |++|+||||+..+|+..++..|.+|.++|.|++.+... .+++........ ...++..+.+.
T Consensus 55 ~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~~ 124 (341)
T 2p67_A 55 NTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRPV 124 (341)
T ss_dssp CSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEEE
T ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeecC
Confidence 45678877 69999999999999999999999999999999875432 112211100000 00012222221
Q ss_pred CCCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc
Q 009721 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (527)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~ 316 (527)
.... ..+......++.+. .+.+.+|+++|||||+- ......+ ...+|.+++|+.+..
T Consensus 125 ~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG~-~~~~~~~--~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 125 PSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVGV-GQSETEV--ARMVDCFISLQIAGG 181 (341)
T ss_dssp CC----------CHHHHHHHHHH-HHHHTTCSEEEEEEECC-TTHHHHH--HTTCSEEEEEECC--
T ss_pred cccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCCc-cchHHHH--HHhCCEEEEEEeCCc
Confidence 1100 00111112222222 22347999999999764 3332222 457899999988754
No 62
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.03 E-value=9.7e-05 Score=73.35 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=90.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~ 251 (527)
.+.+|+++ |.+|+||||+...||..+...|.+|++.+.|.++..... .+. ......++.+++-.
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~------ql~---------~~~~~~~i~~v~q~ 164 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT------QLS---------EWGKRLSIPVIQGP 164 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTH------HHH---------HHHHHHTCCEECCC
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHH------HHH---------HHHHhcCceEEEeC
Confidence 45689999 779999999999999999988999999999987643100 000 00000123333311
Q ss_pred CCCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh--h--------hhh--hhcCCCeEEEEeCCCcchH
Q 009721 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L--------TLC--QVVPLTAAVIVTTPQKLAF 319 (527)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~--~--------~~~--~~~a~d~viiV~~p~~~s~ 319 (527)
..... .......+.... ...+|++++|+++...... . .++ ....-+.++++..+...
T Consensus 165 ~~~~p-----~~~v~~~v~~~~----~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~-- 233 (304)
T 1rj9_A 165 EGTDS-----AALAYDAVQAMK----ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG-- 233 (304)
T ss_dssp TTCCH-----HHHHHHHHHHHH----HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--
T ss_pred CCCCH-----HHHHHHHHHHHH----hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--
Confidence 11100 001111222211 2468999999987543211 0 000 01123456667665432
Q ss_pred HHHHHHHHHHH-cCCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 320 IDVAKGVRMFS-KLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 320 ~~~~~~~~~l~-~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
..+...+..+. ..+. .++|+|+.+....+ +..-.+...++.|+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~--t~iivTh~d~~a~g--------g~~l~i~~~~~~pi~~i 280 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGL--TGVIVTKLDGTAKG--------GVLIPIVRTLKVPIKFV 280 (304)
T ss_dssp THHHHHHHHHHHHHCC--SEEEEECTTSSCCC--------TTHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHHHHcCC--cEEEEECCcccccc--------cHHHHHHHHHCCCeEEE
Confidence 22333333333 3344 57899986433222 35667888888876653
No 63
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=97.88 E-value=8.5e-06 Score=83.82 Aligned_cols=52 Identities=29% Similarity=0.396 Sum_probs=47.0
Q ss_pred CcceEEEEeeCcC---CChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCc
Q 009721 171 KISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (527)
Q Consensus 171 ~~~kvIav~s~KG---GvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~ 225 (527)
...|+|.|+|..+ |.||||+++|||..||+.|+||+++ .+.|+++..||...
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 3468999999999 9999999999999999999999998 88999888877654
No 64
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.87 E-value=6.3e-05 Score=84.82 Aligned_cols=88 Identities=11% Similarity=0.025 Sum_probs=57.9
Q ss_pred CCCEEEEeCCCCCChh------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccc
Q 009721 280 ELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~ 353 (527)
.||++||....|+... ...++.... .-+++|+.....++..+.-.++.+...++++.|+|+|++..
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~------- 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL------- 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS-------
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch-------
Confidence 7999999998765321 111211111 34688888888888888888888888899999999997531
Q ss_pred cccCCchHHHHHHH----hCCCeEEeccCch
Q 009721 354 YPFGRGSGSQVVQQ----FGIPHLFDLPIRP 380 (527)
Q Consensus 354 ~~~~~~~~~~~~~~----~g~~~l~~IP~~~ 380 (527)
...+.+.+. .+++.++.+|+.+
T Consensus 273 -----~~~~~l~~~l~~~~~v~vLg~lP~~~ 298 (831)
T 4a0g_A 273 -----VNEVPLTSYLRNKVPVLVLPPVPKDP 298 (831)
T ss_dssp -----CTHHHHHHHTTTSSCEEEECCCCCCT
T ss_pred -----hHHHHHHHHHHhCCCceeeCCCCCCC
Confidence 123344443 3455577788765
No 65
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.85 E-value=7e-05 Score=75.19 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=109.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
.+.|.+++.--+|||||++..|..+|.++|+++..+-....+ .+. . .... .+|-
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg----~~~-------~-----~~gi-----~~Da----- 205 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTG----VML-------E-----GDGV-----ALDA----- 205 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHH----HHH-------H-----SCSC-----CGGG-----
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchh----hhh-------h-----cCCc-----chhH-----
Confidence 678999999999999999999999999999999884322111 000 0 0000 0000
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChh----hhhhhhhcCCCeEEEEeCCCcchH---------
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAF--------- 319 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~----~~~~~~~~a~d~viiV~~p~~~s~--------- 319 (527)
.........++.+...+ +++||+|||-..+|+-.. .+.+......+.++++..|....+
T Consensus 206 -------v~~df~aG~ve~~~~~~-~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 206 -------VRVDFAAGAVEQMVMRY-GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp -------SBHHHHHHHHHHHHHHH-TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred -------HHHHHHhhhHHHHHHHh-ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 00111223445555444 368999999998776432 233333445688999999877666
Q ss_pred --HHHHHHHHHHHc-----CCCCEEEEEEecccccCCCccccccCCchHHHHHHHhCCCeEEeccC
Q 009721 320 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPI 378 (527)
Q Consensus 320 --~~~~~~~~~l~~-----~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IP~ 378 (527)
.....+++.+.. .+.++.|+++|....+.. ..++..+.+++.+|.|.+..+.+
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~------~~~~~~~~ie~~~glPv~d~~r~ 337 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEY------AAKEAIAHTIAETGLPCTDVVRF 337 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHH------HHHHHHHHHHHHHCSCEECHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHH------HHHHHHHHHHHHHCCCEEEEecC
Confidence 777788887765 568899999998543321 12357889999999988876544
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.82 E-value=0.00022 Score=72.40 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.+|+++ |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 4689988 6799999999999999999889999999999765
No 67
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.68 E-value=0.00045 Score=68.44 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=36.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.++++. |..|+||||+...||..+...|.+|++.+.|.+.
T Consensus 100 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4689988 6799999999999999999889999999999765
No 68
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.63 E-value=0.00025 Score=78.61 Aligned_cols=93 Identities=19% Similarity=0.062 Sum_probs=61.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
..|++.|||||+...........+..+|.+++|+.+...........++.+...+++++ +|+|+++..... ..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~------~~ 152 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRMGAN------FL 152 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCccccc------HH
Confidence 46999999998854422222333557899999998876655556667777777788855 678997643321 12
Q ss_pred chHHHHHHHhCCCeE-EeccC
Q 009721 359 GSGSQVVQQFGIPHL-FDLPI 378 (527)
Q Consensus 359 ~~~~~~~~~~g~~~l-~~IP~ 378 (527)
...+++.+.++...+ ..+|.
T Consensus 153 ~~~~~l~~~l~~~~~~~~~Pi 173 (704)
T 2rdo_7 153 KVVNQIKTRLGANPVPLQLAI 173 (704)
T ss_pred HHHHHHHHHhCCCceeEEccc
Confidence 467788888876432 34554
No 69
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.46 E-value=0.00037 Score=64.18 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=31.8
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.|+.++| .||||.|..+|...+.+|+||+++=+..
T Consensus 31 i~v~tG~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 31 IIVFTGNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp EEEEESSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 44455888 9999999999999999999999998776
No 70
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.43 E-value=0.00062 Score=72.81 Aligned_cols=89 Identities=13% Similarity=0.029 Sum_probs=59.6
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
++.+.+.|+|||+...........+..+|.+++|+.+...........+..+...+++ +-+++|+++......
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~------ 151 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP------ 151 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH------
T ss_pred ECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH------
Confidence 3678999999987533222223335678999999987665445566777777777888 567889976433211
Q ss_pred CchHHHHHHHhCCCeE
Q 009721 358 RGSGSQVVQQFGIPHL 373 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~l 373 (527)
.+..+++.+.++.+..
T Consensus 152 ~~~~~~i~~~l~~~~~ 167 (529)
T 2h5e_A 152 MELLDEVENELKIGCA 167 (529)
T ss_dssp HHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHhCCCcc
Confidence 1357888888886543
No 71
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.00033 Score=71.06 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=34.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++.++ +++|+||||+|.++|..+++.|.+|++||++.
T Consensus 64 ~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 64 RIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456665 89999999999999999999999999999974
No 72
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.16 E-value=0.00084 Score=68.29 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.|+ +.+|+||||++.++|..+++.|.+|++||++.
T Consensus 75 ~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 466665 88999999999999999999999999999985
No 73
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.12 E-value=0.00059 Score=61.49 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=35.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+|++|.|++ ..|+||||++..|+..|..+|++|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 467888885 669999999999999999999999999999864
No 74
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.07 E-value=0.0044 Score=62.61 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=35.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
..+|+++ |..|+||||+.-.|+..+...|.+|.++..|++...
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 4577777 999999999999999999888999999999997643
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.88 E-value=0.023 Score=51.15 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (527)
..+++.|+|+|+...........+..+|.+++|.... ..++..+...+..+.. .+.+ +-+|.|+++...+.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~~~--- 142 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVP-MVLVGNKCDLPTRT--- 142 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcCCccc---
Confidence 3578999999874322222122234568888776654 3455666555555443 2455 56888997754311
Q ss_pred cccCCchHHHHHHHhCCC
Q 009721 354 YPFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (527)
...+..+++.+.++.+
T Consensus 143 --~~~~~~~~~~~~~~~~ 158 (190)
T 3con_A 143 --VDTKQAHELAKSYGIP 158 (190)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --CCHHHHHHHHHHcCCe
Confidence 1123456666666653
No 76
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.83 E-value=0.0062 Score=67.25 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=57.8
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
+..+.+.|+|||+...........+..+|.+++|+.+...........+..+...+++++ +|+|+++..... -
T Consensus 74 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~------~ 146 (691)
T 1dar_A 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTGAD------L 146 (691)
T ss_dssp ETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------H
T ss_pred ECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCcccCC------H
Confidence 357899999998754433233333556899999998876555555666777777788855 778997643221 1
Q ss_pred CchHHHHHHHhCCC
Q 009721 358 RGSGSQVVQQFGIP 371 (527)
Q Consensus 358 ~~~~~~~~~~~g~~ 371 (527)
....+++.+.++..
T Consensus 147 ~~~~~~l~~~l~~~ 160 (691)
T 1dar_A 147 WLVIRTMQERLGAR 160 (691)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCC
Confidence 13567777777754
No 77
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.80 E-value=0.0021 Score=65.01 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=34.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.++.++ |..|+||||++.++|..+++.|.+|++||++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3466666 88999999999999999999999999999984
No 78
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.77 E-value=0.0073 Score=62.22 Aligned_cols=69 Identities=16% Similarity=0.240 Sum_probs=48.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+++.+-+++|+++..
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 567899999976432222233334568999999988765556667777788888888667888997653
No 79
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.71 E-value=0.011 Score=59.37 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=36.8
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+.+++++ |..|+||||+.-.|+..+...|.+|.++..|++.
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 34678877 9999999999999999998888999999999864
No 80
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.66 E-value=0.013 Score=62.72 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=66.7
Q ss_pred ccCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCcccccc
Q 009721 277 EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 277 ~~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.|++|-+=|||||+......-....+.++|.+++|+....--...+...++.+.+.++|++ +++|+++..... .
T Consensus 96 ~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~~ad--~--- 169 (548)
T 3vqt_A 96 PYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDREALH--P--- 169 (548)
T ss_dssp EETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSCCCC--H---
T ss_pred EECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccchhcc--h---
Confidence 3678999999999854433323344678899999999988878888999999999999965 566997643221 1
Q ss_pred CCchHHHHHHHhCCCeE
Q 009721 357 GRGSGSQVVQQFGIPHL 373 (527)
Q Consensus 357 ~~~~~~~~~~~~g~~~l 373 (527)
...++++.+.|+....
T Consensus 170 -~~~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 170 -LDVMADIEQHLQIECA 185 (548)
T ss_dssp -HHHHHHHHHHHTSEEE
T ss_pred -hHhhhhhhhhcCCceE
Confidence 1568899999986543
No 81
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.61 E-value=0.0084 Score=60.99 Aligned_cols=67 Identities=6% Similarity=-0.060 Sum_probs=48.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEe-cccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N-~~~~ 346 (527)
+++.+.|+|||+-..........+..+|.+++|+. +......+...+..+...+++.+-+++| +++.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 56779999998754433223333557899999998 6666667777788888889998677888 9764
No 82
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.61 E-value=0.013 Score=64.68 Aligned_cols=87 Identities=20% Similarity=0.043 Sum_probs=56.2
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
++.+.+.|+|||+...........+..+|.+++|+.+...........+..+...+.+++ +|+|+++..... .
T Consensus 72 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~------~ 144 (693)
T 2xex_A 72 WEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKLGAN------F 144 (693)
T ss_dssp ETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCC------H
T ss_pred ECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCccccc------h
Confidence 357889999998754322222233456899999998766444455566677777788754 678997643311 1
Q ss_pred CchHHHHHHHhCCC
Q 009721 358 RGSGSQVVQQFGIP 371 (527)
Q Consensus 358 ~~~~~~~~~~~g~~ 371 (527)
....+++.+.++..
T Consensus 145 ~~~~~~l~~~l~~~ 158 (693)
T 2xex_A 145 EYSVSTLHDRLQAN 158 (693)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCC
Confidence 13567788888754
No 83
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.60 E-value=0.039 Score=49.59 Aligned_cols=88 Identities=10% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..... .
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~----~ 144 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER----V 144 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc----C
Confidence 35678999998743222222222446788888887643 45666666666665531 23466888997753211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 145 VPAEDGRRLADDLGF 159 (189)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345667777764
No 84
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.55 E-value=0.016 Score=57.37 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCCChh----------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccccC
Q 009721 280 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~----------~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~ 348 (527)
.+.++|+|||+-.... ......+..+|.+++|+.++.. +..+....++.+...+.++ -+|+|+++...
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl~~ 136 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDKIG 136 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGGSS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccCCC
Confidence 7789999998743211 1112224457999999887653 4444433367777777774 57789977531
Q ss_pred CCccccccCCchHHHHHHHhC
Q 009721 349 DGKRYYPFGRGSGSQVVQQFG 369 (527)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~g 369 (527)
... ......+++.+.++
T Consensus 137 ~~~----~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 137 PAK----NVLPLIDEIHKKHP 153 (308)
T ss_dssp SGG----GGHHHHHHHHHHCT
T ss_pred CHH----HHHHHHHHHHHhcc
Confidence 111 11134566777775
No 85
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.54 E-value=0.0013 Score=70.22 Aligned_cols=88 Identities=13% Similarity=0.036 Sum_probs=60.1
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
++.+.+.|+|||+-..........+..+|.+++|+.+...........+..+...++++ -+|+|+++..... .
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl~~~~------~ 151 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDRDTRP------S 151 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTSCCSC------H
T ss_pred eCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCCcccc------H
Confidence 36788999999875432233333456789999999887755556667788888888885 5677997653221 1
Q ss_pred CchHHHHHHHhCCCe
Q 009721 358 RGSGSQVVQQFGIPH 372 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~ 372 (527)
.+.++++.+.++...
T Consensus 152 ~~~l~ei~~~l~~~~ 166 (528)
T 3tr5_A 152 IELLDEIESILRIHC 166 (528)
T ss_dssp HHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHhhCCCc
Confidence 135778888888643
No 86
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.003 Score=57.38 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=34.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+++|.+. |..|+||||++..||..|...|.+|.++|.|..
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4566665 999999999999999999999999999998753
No 87
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.011 Score=55.62 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=30.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
|.+..|-.|+||||.+..++..++.+|++|+++-
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 5555588999999999999999999999999994
No 88
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.41 E-value=0.0057 Score=61.78 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=34.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.++.|+ |-.|+||||++.++|..++..|.+|++||...
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4567776 66999999999999999999999999999875
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.40 E-value=0.059 Score=46.57 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=49.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (527)
..+++.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++...+.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~~~--- 124 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAART--- 124 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSCCC---
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhhcc---
Confidence 35778999998754322222222345688888877653 4455555555544432 455 56888997754321
Q ss_pred cccCCchHHHHHHHhCCC
Q 009721 354 YPFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (527)
......+++.+.++.+
T Consensus 125 --~~~~~~~~~~~~~~~~ 140 (166)
T 2ce2_X 125 --VESRQAQDLARSYGIP 140 (166)
T ss_dssp --SCHHHHHHHHHHHTCC
T ss_pred --cCHHHHHHHHHHcCCe
Confidence 1123456667777654
No 90
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.32 E-value=0.011 Score=60.82 Aligned_cols=69 Identities=13% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|||+-..........+..+|.+++|+.............+..+...+++.+-+++|+++..
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999976322122222334568999999988765555566667777778888667889997753
No 91
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.25 E-value=0.0038 Score=60.21 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=33.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
|++|.+. |-.|+||||++..|+..|...|+.++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4566666 789999999999999999989999988888753
No 92
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.23 E-value=0.18 Score=45.16 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=40.6
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (527)
+.+.|+|+|+...........+..+|.+++|...... ++..+...+..+.......+-+|+|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 7899999987322111222224467889998887554 4556665555555422245678899977
No 93
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.17 E-value=0.0076 Score=54.46 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
|+++++|+ |..|+||||+...|...+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 56778777 6889999999999999999999999999988754
No 94
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.15 E-value=0.15 Score=46.28 Aligned_cols=87 Identities=14% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.....
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 145 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP-VVLVGNKADLSPER--- 145 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCcccc---
Confidence 4678899999874322222222244578888887755 44666666666666543 455 56888997743211
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
.......+.+.+.++.
T Consensus 146 -~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 146 -EVQAVEGKKLAESWGA 161 (201)
T ss_dssp -CSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHhCC
Confidence 1112344556666664
No 95
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.13 E-value=0.028 Score=56.40 Aligned_cols=137 Identities=20% Similarity=0.200 Sum_probs=82.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCccCCCCccccccCCCCCceeeeccCCceEEccCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~~~lg~~~~~~~~~~~~~~i~~~~~~gl~vl~~~~ 252 (527)
.+.|.+++.-.++||||++..|...|.++|++|..+-.-..+ .+.+... -++.+
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg----~li~~~~---------------------gv~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTG----ILIGADA---------------------GYVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHH----HHTTCSE---------------------ECCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCcee----eeeccCC---------------------CCCCC-
Confidence 578888988889999999999999999999999886533221 1111100 00000
Q ss_pred CCCcccccCCccHHHHHHHHHHhcccCCCCEEEEeCCCCCChhh-----hhhhhhcCCCeEEEEeCCC-----------c
Q 009721 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----LTLCQVVPLTAAVIVTTPQ-----------K 316 (527)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~IIID~pp~~~~~~-----~~~~~~~a~d~viiV~~p~-----------~ 316 (527)
....+.....++.++.....++||++||-..+|+.... +.+..-...|.+++...|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 00111111222222222223799999999998764322 2233334568888877654 1
Q ss_pred -chHHHHHHHHHHHHcCCCCEEEEE-Eec
Q 009721 317 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 343 (527)
Q Consensus 317 -~s~~~~~~~~~~l~~~~~~~~gvV-~N~ 343 (527)
.++.....+++.+. +.+++|++ +|.
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45555555555554 67899999 995
No 96
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.13 E-value=0.028 Score=53.92 Aligned_cols=89 Identities=12% Similarity=0.043 Sum_probs=54.3
Q ss_pred CCCCEEEEeCCCCCChhh----------h--hhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQ----------L--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~----------~--~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|||+-..... + .......+|.+++|+.... ..........+.+.+.+ +-+|+||++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~p-vilv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKP-VVVALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSC-EEEEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCC-EEEEEEChhc
Confidence 455789999987432211 1 1111146799999988766 34444566667777877 4577899764
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
...... ....+.+.+.+|.+++..
T Consensus 123 ~~~~~~-----~~~~~~l~~~lg~~vi~~ 146 (256)
T 3iby_A 123 AEHRGI-----SIDTEKLESLLGCSVIPI 146 (256)
T ss_dssp HHHTTC-----EECHHHHHHHHCSCEEEC
T ss_pred CCcCCc-----HHHHHHHHHHcCCCEEEE
Confidence 321111 123677888999876654
No 97
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.09 E-value=0.07 Score=47.20 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=49.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++...... .
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----~ 135 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARK----V 135 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----S
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccccc----C
Confidence 4678999998743222222222445788888887643 45566666666665432 224668889977532211 1
Q ss_pred CCchHHHHHHHhCC
Q 009721 357 GRGSGSQVVQQFGI 370 (527)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (527)
..+..+++.+.++.
T Consensus 136 ~~~~~~~~~~~~~~ 149 (181)
T 2efe_B 136 TAEDAQTYAQENGL 149 (181)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12344555555554
No 98
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.08 E-value=0.063 Score=47.67 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 136 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 136 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4678999998754322222222345788888877653 445555544444332 2455 45888998753
No 99
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.05 E-value=0.031 Score=48.77 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.+.+.|+|+|+...........+..+|.+++|...+.. ++..+...+..+... +.+ +-+|.|+++...... .
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~----~ 127 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP-TALVQNKIDLLDDSC----I 127 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCC-EEEEEECGGGGGGCS----S
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccCcccc----c
Confidence 56799999987322111111224467888888876543 455555555444332 455 568889977532111 1
Q ss_pred CCchHHHHHHHhCC
Q 009721 357 GRGSGSQVVQQFGI 370 (527)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (527)
..+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~ 141 (168)
T 1z2a_A 128 KNEEAEGLAKRLKL 141 (168)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12345566666664
No 100
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.03 E-value=0.11 Score=46.41 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=39.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc----hHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~----s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|...... .......+.+.+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~p-iilv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVP-IVIQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSC-EEEEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCC-EEEEEEchhcc
Confidence 456789999987433222222234568999999887633 222233333344332 444 56888997643
No 101
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.98 E-value=0.031 Score=50.47 Aligned_cols=87 Identities=11% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+... +. .+-+|.|+++.....
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~---- 144 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNA-QVILVGNKCDMEEER---- 144 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGC----
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECCCCcccc----
Confidence 4567899999763211112222244678888887765 44566666666666553 33 356888997753211
Q ss_pred ccCCchHHHHHHHhCC
Q 009721 355 PFGRGSGSQVVQQFGI 370 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (527)
....+..+.+.+.++.
T Consensus 145 ~~~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 145 VVPTEKGQLLAEQLGF 160 (191)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHcCC
Confidence 1122345666777775
No 102
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.97 E-value=0.0057 Score=55.34 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=32.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|++|+|. |-.|+||||++..|+..|...|+++..+|.|
T Consensus 1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3566666 8899999999999999999889999999754
No 103
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.93 E-value=0.037 Score=54.50 Aligned_cols=67 Identities=22% Similarity=0.176 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCCh--------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC--CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~--------~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
+++.++|+|||+-... .......+..+|.+++|+..+..--..-..+++.++.. +.+ +-+|+|+++.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-ILLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSC-EEEEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCC-EEEEEECccc
Confidence 5678999999874321 11122234568999999887543222234555667766 666 4577899764
No 104
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.92 E-value=0.22 Score=43.33 Aligned_cols=67 Identities=15% Similarity=0.035 Sum_probs=40.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+. .+-+|.|+++.
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl 120 (171)
T 1upt_A 49 KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA-ILVVFANKQDM 120 (171)
T ss_dssp TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTS
T ss_pred CCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC-EEEEEEECCCC
Confidence 35678999998743222222222446788888887654 356666555544433 234 46788899764
No 105
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.91 E-value=0.0074 Score=56.09 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++|+|+ |.+|+||||+..+|+..+... ++|.+|+.|++
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 3567777 899999999999999988655 89999999985
No 106
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.89 E-value=0.013 Score=64.05 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=64.4
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccC
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
|++|-+-|||||+......-....+..+|.+++|+....--...+...++.+.+.+++.+ +++|+++..... -
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~------~ 136 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQNGID------L 136 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCC------S
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccccCC------H
Confidence 678889999999876554444455778899999998876666677888999999999975 567997643221 1
Q ss_pred CchHHHHHHHhCCCe
Q 009721 358 RGSGSQVVQQFGIPH 372 (527)
Q Consensus 358 ~~~~~~~~~~~g~~~ 372 (527)
....+++.+.++...
T Consensus 137 ~~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 137 STVYQDIKEKLSAEI 151 (638)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 246788888887544
No 107
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.88 E-value=0.34 Score=41.68 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.++++..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCccc
Confidence 4568999998743322222222345688888776544 355555555444432 2455 56888998753
No 108
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.86 E-value=0.14 Score=46.02 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----------CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----------~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+.-.........+..+|.+++|+.... .++..+...+..+... +.+ +-+|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCC
Confidence 56789999998743322222222446788988887654 4566666665555443 555 5578899764
Q ss_pred c
Q 009721 347 D 347 (527)
Q Consensus 347 ~ 347 (527)
.
T Consensus 140 ~ 140 (199)
T 4bas_A 140 A 140 (199)
T ss_dssp T
T ss_pred C
Confidence 3
No 109
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.86 E-value=0.15 Score=44.88 Aligned_cols=87 Identities=13% Similarity=0.113 Sum_probs=50.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEecccccCCCccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~~~~~~~ 353 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+.+-+|.|+++.....
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~--- 131 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMR--- 131 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGC---
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccc---
Confidence 3678999998754322222222456789999888754 3555555555555442 566577899998753311
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
....+..+++.+.++.
T Consensus 132 -~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 132 -TIKPEKHLRFCQENGF 147 (178)
T ss_dssp -SSCHHHHHHHHHHHTC
T ss_pred -ccCHHHHHHHHHHcCC
Confidence 1112345556666664
No 110
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.11 Score=45.60 Aligned_cols=67 Identities=18% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCCEEEEeCCCCCC--hhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~--~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+... ...+.......+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++..
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~ 124 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP-IILVGNKADLA 124 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCC-EEEEEEChhhc
Confidence 45788999986432 1111112233467787776654 45666676666666554 455 56888997754
No 111
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.84 E-value=0.29 Score=43.40 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~---- 143 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQR---- 143 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCC-EEEEEECTTCGGGC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc----
Confidence 5689999998743322222233456788888887643 455555666555543 2444 56888997753211
Q ss_pred ccCCchHHHHHHHhCCC
Q 009721 355 PFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (527)
....+..+++.+.++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~ 160 (195)
T 3bc1_A 144 AVKEEEARELAEKYGIP 160 (195)
T ss_dssp CSCHHHHHHHHHHHTCC
T ss_pred ccCHHHHHHHHHHcCCC
Confidence 11123455666666643
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.83 E-value=0.15 Score=45.07 Aligned_cols=86 Identities=10% Similarity=0.153 Sum_probs=46.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+.|+|+|+.-............+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 127 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDLHMER---- 127 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CC-EEEEEECTTCTTTC----
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcc----
Confidence 4678999998743221111122335788888876543 455555555544422 2455 55788997753211
Q ss_pred ccCCchHHHHHHHhCC
Q 009721 355 PFGRGSGSQVVQQFGI 370 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (527)
....+..+++.+.++.
T Consensus 128 ~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 128 VISYEEGKALAESWNA 143 (181)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred eecHHHHHHHHHHhCC
Confidence 1122345566666654
No 113
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.12 Score=45.62 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+. .+-+|.|+++......
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---- 133 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV-ALMLLGNKVDSAHERV---- 133 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECCSTTSCCC----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-cEEEEEECcccCcccc----
Confidence 4678999998743322222222445788888887654 455555555555544 233 4668889977543211
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+.+.+.++.+
T Consensus 134 ~~~~~~~~~~~~~~~~ 149 (180)
T 2g6b_A 134 VKREDGEKLAKEYGLP 149 (180)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123445566666643
No 114
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=95.81 E-value=0.0047 Score=50.51 Aligned_cols=36 Identities=25% Similarity=0.563 Sum_probs=30.3
Q ss_pred cceeEEEEe-cCeeEEEEcCCCCcccCChHHHHhchh
Q 009721 482 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTMER 517 (527)
Q Consensus 482 i~~~~~~~~-g~~al~i~w~Dgh~s~y~~~~L~~~~~ 517 (527)
..|++|... ++..|.|.|+|||.+.|++.|||.-++
T Consensus 7 ~~P~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~c~ 43 (101)
T 3luu_A 7 TQPLEIRPLMISRVMEVDWADGHTSRLTFEHLRVECP 43 (101)
T ss_dssp GCEEEEEEETTTTEEEEEETTSCEEEEEHHHHHHTCC
T ss_pred CCCeEEEEeCCCCEEEEEeCCCCEEEECHHHHHhhCC
Confidence 457788876 457899999999999999999998854
No 115
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.75 E-value=0.17 Score=45.93 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLR 142 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHhh
Confidence 4678999998742221122222445788888876544 456655 4555555543 555 45888997653
No 116
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.01 Score=55.92 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.++.++ |..|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 456665 889999999999999999999999999998863
No 117
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.67 E-value=0.014 Score=53.76 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3567776 8899999999999999998888999999988654
No 118
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.65 E-value=0.029 Score=59.58 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=41.7
Q ss_pred CcceEEEEe-eCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 171 KISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 171 ~~~kvIav~-s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
.|+|-|.|+ +.-.|+||+++++.|+..|+++|+||..+-+||+-+-
T Consensus 10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~n~ 56 (550)
T 1vco_A 10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVNV 56 (550)
T ss_dssp CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSCS
T ss_pred cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccccccc
Confidence 367889999 7889999999999999999999999999999988654
No 119
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.63 E-value=0.12 Score=47.10 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=49.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++...... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----~ 131 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----V 131 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----S
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc----c
Confidence 4678999998743322222222446788888887654 45666666666555432 234568889977543211 1
Q ss_pred CCchHHHHHHHhCC
Q 009721 357 GRGSGSQVVQQFGI 370 (527)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (527)
..+....+.+..+.
T Consensus 132 ~~~~~~~~~~~~~~ 145 (206)
T 2bcg_Y 132 EYDVAKEFADANKM 145 (206)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 11334555555554
No 120
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.63 E-value=0.1 Score=45.47 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+... +. .+-+|.|+++...+.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~----- 124 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA-QLLLVGNKSDMETRV----- 124 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCTTCC-----
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECccCCcCc-----
Confidence 4678999998732111111122345688888877654 3555555665555443 33 356888997752211
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+++.+.++.+
T Consensus 125 ~~~~~~~~~~~~~~~~ 140 (170)
T 1g16_A 125 VTADQGEALAKELGIP 140 (170)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCe
Confidence 1123455666666653
No 121
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.085 Score=47.54 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=42.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 45678999998743222222222456788888877643 45666666666665532 23467888998753
No 122
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.59 E-value=0.072 Score=46.45 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .+...+...++.+...+ ...+-+|.|+++..
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4678999998742222222222446788888877654 45566666666665542 23466788997653
No 123
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.57 E-value=0.067 Score=46.23 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCCCh-------hhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~-------~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+..+.|+|||+.... .......+..+|.++++...............+.+...+.+ +-+|.|+++.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 446889999774331 11111224467888888776552112223444555555666 5688899764
No 124
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.2 Score=44.86 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=50.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++......
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~~~~~---- 138 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTTKKV---- 138 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTTCC----
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccccccc----
Confidence 3678999998743222222222456788888887654 4555556665555543 343 567889977543221
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
......+++.+.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~ 154 (196)
T 3tkl_A 139 VDYTTAKEFADSLGIP 154 (196)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHcCCc
Confidence 1223456677777754
No 125
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.55 E-value=0.13 Score=44.87 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=46.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEecccccCCCcccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++......
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~--- 128 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEIC-LCIVGNKIDLEKERH--- 128 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSE-EEEEEECGGGGGGCC---
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccc---
Confidence 34678999998743222222222345788888877644 455666655555543 2343 568889977543111
Q ss_pred ccCCchHHHHHHHhCC
Q 009721 355 PFGRGSGSQVVQQFGI 370 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 129 -~~~~~~~~~~~~~~~ 143 (170)
T 1z08_A 129 -VSIQEAESYAESVGA 143 (170)
T ss_dssp -SCHHHHHHHHHHTTC
T ss_pred -cCHHHHHHHHHHcCC
Confidence 112345556666664
No 126
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.53 E-value=0.46 Score=40.92 Aligned_cols=68 Identities=9% Similarity=0.012 Sum_probs=41.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... ....+-+|.|+++.
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence 45779999998753322222222456788888877643 4566666655554332 12346788899764
No 127
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.52 E-value=0.23 Score=44.95 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++..... .
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~----~ 130 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDER----V 130 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSC----C
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccCccc----c
Confidence 4678999998743222222222445788888887654 4556666666655542 344 56888997753321 1
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 131 ~~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 131 VSSERGRQLADHLGF 145 (203)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHCCC
Confidence 122345667777765
No 128
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.51 E-value=0.47 Score=41.58 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=36.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 35678999998743222222222345788888886643 455555555444432 2444 5678899775
No 129
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.50 E-value=0.019 Score=56.72 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.0
Q ss_pred EEeeCcCCChhHHHHHHHHHHHHHC--CCcEEEEEeCC
Q 009721 177 AVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADV 212 (527)
Q Consensus 177 av~s~KGGvGKTT~a~nLA~~LA~~--G~rVllID~D~ 212 (527)
....|-.|+||||++.+++..+++. |.+|+.||+.-
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 3445789999999999999999886 88999999864
No 130
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.47 E-value=0.078 Score=46.74 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=39.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
++..+.|+|||+..............+|.+++|...+..........+..+...+.+ +-+|.|+++.
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl 119 (178)
T 2lkc_A 53 NDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVP-IIVAINKMDK 119 (178)
T ss_dssp TTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCC-EEEEEETTTS
T ss_pred CCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCC-EEEEEECccC
Confidence 345678889987432221212223456888888876554434444555566555676 5678899764
No 131
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.43 E-value=0.24 Score=44.40 Aligned_cols=86 Identities=12% Similarity=0.163 Sum_probs=47.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..... .
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~~~~----~ 143 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNM-VIMLIGNKSDLESRR----D 143 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGC----C
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECcccCCcc----c
Confidence 4678999998732211111122446788888887644 4556666666555542 33 356888997753211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+.+.+.++.
T Consensus 144 v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 144 VKREEGEAFAREHGL 158 (191)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112344556666654
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.39 E-value=0.015 Score=53.74 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+++++ |.+|+||||++.++|. ..|.+|+++|.+.+
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~ 56 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG 56 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence 456655 9999999999999998 56889999999863
No 133
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.38 E-value=0.066 Score=48.10 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=41.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc------CCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~ 347 (527)
+++.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 139 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLR 139 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcc
Confidence 45789999998743322222222456788998887654 456666555554433 2444 56888997653
No 134
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.28 Score=44.72 Aligned_cols=68 Identities=10% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 4678999998743222222223446788888887543 45555566655555431 22456788997753
No 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.35 E-value=0.11 Score=45.63 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|..... .+...+...+..+... +. .+-+|.|+++......
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~---- 137 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT-VIILIGNKADLEAQRD---- 137 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGCC----
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccccccc----
Confidence 4678999998742221222222446788888887654 4555555555555432 33 3668889976532111
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 138 ~~~~~~~~~~~~~~~ 152 (179)
T 1z0f_A 138 VTYEEAKQFAEENGL 152 (179)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 111334555555554
No 136
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.33 E-value=0.015 Score=57.69 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++.++ +..|+||||++.++|..++.+|.+|+++++..
T Consensus 69 ~l~li~-G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~ 106 (315)
T 3bh0_A 69 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 106 (315)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 345444 99999999999999999999999999999884
No 137
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.11 Score=45.30 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIP-IMLVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCC-EEEEEEccccc
Confidence 34678999998754332222222345788888877654 3455555555444432 455 56888997753
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.25 E-value=0.087 Score=51.74 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~---------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.+.++++|||+-..... .....+..+|.+++|+.....+- ....+++.+...+.|.+ +++|+++..
T Consensus 54 ~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~-~~~~i~~~l~~~~~P~i-lvlNK~D~~ 129 (301)
T 1ega_A 54 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTP-DDEMVLNKLREGKAPVI-LAVNKVDNV 129 (301)
T ss_dssp TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCH-HHHHHHHHHHSSSSCEE-EEEESTTTC
T ss_pred CCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCH-HHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 456788999965320110 01112334677777776644332 23355666766677754 566997643
No 139
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=95.22 E-value=0.24 Score=52.15 Aligned_cols=124 Identities=6% Similarity=-0.024 Sum_probs=63.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (527)
+.+.+.|+|||+.-....+....+..+|.+++|+..+. .++..+...+..+... +.+ +-+|.|+++....
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~---- 438 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIFANKQDLPDA---- 438 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSSSSC----
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCCCcC----
Confidence 46789999998743322222233456799998887644 4566666555544332 344 6688899764321
Q ss_pred cccCCchHHHHHHHhCCCeEEeccCchhHHhcccCCCceEeeCCCCHHHHHHHHHHHHHHHHHHHHhccccce
Q 009721 354 YPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDSGMPEVAADPCGEVANTFQDLGVCVVQQCAKIRQQVSTA 426 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~~l~~IP~~~~i~~a~~~g~pv~~~~p~s~~a~~~~~la~~i~~~~~~~~~~v~t~ 426 (527)
...+++.+.++..... ..+.++++.. .....-+.++.+.|.+.+.......+|.
T Consensus 439 -----~~~~~~~~~~~~~~~~------------~~~~~~~~~S--A~~g~gi~~l~~~l~~~~~~~~~~~~~~ 492 (497)
T 3lvq_E 439 -----MKPHEIQEKLGLTRIR------------DRNWYVQPSC--ATSGDGLYEGLTWLTSNYKSKLAAALEH 492 (497)
T ss_dssp -----CCHHHHHHHTTCTTCC------------SSCEEEEECB--TTTTBTHHHHHHHHHHHCC---------
T ss_pred -----CCHHHHHHHhchhhhh------------cCCeEEEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCCcc
Confidence 2345677776643221 1122333221 1222345666667776666666666554
No 140
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=95.21 E-value=0.046 Score=57.99 Aligned_cols=45 Identities=29% Similarity=0.330 Sum_probs=40.4
Q ss_pred ceEEEEe-eCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 173 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 173 ~kvIav~-s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
+|-|.|. +.-.|+|||++++.|+..|+++|+||..+-+||+-+--
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n~d 48 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVD 48 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSCSC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccccCC
Confidence 4778888 88999999999999999999999999999999886543
No 141
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.16 E-value=0.097 Score=45.49 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 35678999998743222222222446788888887654 45666666665555432 22356777998753
No 142
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.16 E-value=0.38 Score=42.53 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=47.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+.|+|+|+......+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++...+.
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~---- 125 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDLPSRT---- 125 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTSSSCS----
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccCcccc----
Confidence 4567789998743222222122335688888776544 455565555555543 2455 56888997754221
Q ss_pred ccCCchHHHHHHHhCCC
Q 009721 355 PFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (527)
...+..+.+.+.++.+
T Consensus 126 -~~~~~~~~~~~~~~~~ 141 (189)
T 4dsu_A 126 -VDTKQAQDLARSYGIP 141 (189)
T ss_dssp -SCHHHHHHHHHHHTCC
T ss_pred -cCHHHHHHHHHHcCCe
Confidence 1224566777777754
No 143
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.15 E-value=0.17 Score=45.03 Aligned_cols=68 Identities=6% Similarity=-0.032 Sum_probs=41.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+... ....+-+|.|+++.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCc
Confidence 45778999998742221222222446788888887654 3666666665554432 22346788899764
No 144
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.15 E-value=0.24 Score=44.99 Aligned_cols=86 Identities=12% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... +. .+-+|.|+++...+.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~----- 141 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA-QLLLVGNKSDMETRV----- 141 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS-EEEEEEECTTCSSCC-----
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECCCCcccc-----
Confidence 3678999998732211111222446788888887654 3555555555555443 33 356888998753211
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+++.+.++.+
T Consensus 142 ~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 VTADQGEALAKELGIP 157 (213)
T ss_dssp SCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHcCCE
Confidence 1123455666666653
No 145
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.14 E-value=0.02 Score=53.23 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+++++ |..|+||||++..+|..++..|.+|++++.+.
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 467766 88999999999999999888888999999876
No 146
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.11 E-value=0.016 Score=52.10 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=32.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
||++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 567899995 88999999999999999999999888877754
No 147
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.09 E-value=0.015 Score=55.62 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHH-----CCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~-----~G~rVllID~D~~~ 214 (527)
.+.+|+++ |-.|+||||+|..||..|.. .|++|+++|+|-..
T Consensus 21 ~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 34577776 88999999999999987763 36789999999644
No 148
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.09 E-value=0.02 Score=53.26 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
..+|+|+ |.+||||||+..+|+..+... +++..|+.|++
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 3567777 779999999999999987655 89999999975
No 149
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.13 Score=47.05 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVP-IILVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhhh
Confidence 4678999998743222222222445788888876654 455655 4455555543 555 45888997643
No 150
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.08 E-value=0.13 Score=46.29 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...++.+.... ...+-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 4678999998743322222222345788888887654 45666655555555432 22466888998753
No 151
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.03 E-value=0.021 Score=57.13 Aligned_cols=37 Identities=16% Similarity=0.427 Sum_probs=33.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++.+ .+..|+||||++.++|..++..|.+|+++.+..
T Consensus 48 LiiI-aG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 48 LVII-GARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp EEEE-EECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred EEEE-EeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4544 499999999999999999999999999999875
No 152
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.00 E-value=0.012 Score=57.67 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=32.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
..+|+++ |-.|+||||+|..|+..|...|.++.+||+|-..
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3578877 7899999999999999998888899999999765
No 153
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.00 E-value=0.24 Score=42.73 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 4688999998743322222222345788888876653 455555554444433 2455 56888998753
No 154
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.99 E-value=0.019 Score=59.90 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=33.3
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+.+..+.+|+||||++.++|..++..|.+|+++++...
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 44445999999999999999999999999999998853
No 155
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.95 E-value=0.16 Score=44.95 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHH----cCCCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS----KLKVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~----~~~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+-|+|+|+.-.........+..+|.+++|...+. .++..+...+..+. ..+.+ +-+|.|+++.....
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 139 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP-MILVANKVDLMHLR---- 139 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTCSTTC----
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCchhcc----
Confidence 3456679998742211111112335788888876654 35555555544443 23555 45888997753311
Q ss_pred ccCCchHHHHHHHhCCC
Q 009721 355 PFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (527)
....+..+++.+.++.+
T Consensus 140 ~v~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 140 KVTRDQGKEMATKYNIP 156 (183)
T ss_dssp CSCHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHhCCe
Confidence 12224466777777754
No 156
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.94 E-value=0.35 Score=43.02 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=40.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-Hc---CCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+ +. .+.+ +-+|.|+++..
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLL 130 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCcc
Confidence 45678899998643222222222456788888887654 4566665555443 22 2445 56888997643
No 157
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.93 E-value=0.062 Score=49.95 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=31.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
++ |-|..|--|.||||.+..+|..+..+|+||+++-
T Consensus 28 G~-l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GW-IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CE-EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CE-EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 44 4455588899999999999999999999999985
No 158
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.92 E-value=0.089 Score=57.70 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=55.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
..+.+.|+|||+...........+..+|.+++|+.+...........++.+...+++++ +|+|+++.. .. ..
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~-~~------~~ 143 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG-GD------YY 143 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC-CC------HH
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh-hh------HH
Confidence 46788999998643322222333456799999988766544556677777777788866 678997754 11 12
Q ss_pred chHHHHHHHhC
Q 009721 359 GSGSQVVQQFG 369 (527)
Q Consensus 359 ~~~~~~~~~~g 369 (527)
+..+++.+.++
T Consensus 144 ~~~~~l~~~l~ 154 (665)
T 2dy1_A 144 ALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 45777888887
No 159
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.92 E-value=0.12 Score=46.14 Aligned_cols=42 Identities=12% Similarity=0.042 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
++.+++|+..............+.+...+.++ -+|.|+++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEChhcC
Confidence 36777777765443333345566777777774 5778997643
No 160
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.41 Score=42.58 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
+++.+.|+|+|+.-.........+..+|.+++|...+.. ++..+...+..+... ....+-+|.|+++.
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 356789999987432222222224567889888876543 677776666655442 22346788899764
No 161
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.91 E-value=0.42 Score=43.04 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-FLLVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCcc
Confidence 4678999998754332222222335688888876543 455555555554443 2455 45888997653
No 162
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.90 E-value=0.18 Score=43.66 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEecccccCCCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... ....+-+|.|+++........ ..
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~v 129 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGER-KV 129 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCC-CS
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccc-CC
Confidence 4578999998743222222222446788888887654 4566666655555432 122356888998754321100 11
Q ss_pred CCchHHHHHHHhCC
Q 009721 357 GRGSGSQVVQQFGI 370 (527)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (527)
..+..+++.+.++.
T Consensus 130 ~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 130 AREEGEKLAEEKGL 143 (170)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHcCC
Confidence 22334555555554
No 163
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.88 E-value=0.23 Score=47.85 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=53.0
Q ss_pred CCCCEEEEeCCCCCChh------------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDI------------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~------------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
.++.+.|+|||+..... .........+|.+++|+.... ..........+.+.+.++ -+|+||++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~-ivv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPC-IVALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCE-EEEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 45678999998743211 001111236788999888765 334445555666668874 577899774
Q ss_pred cCCCccccccCCchHHHHHHHhCCCeEEe
Q 009721 347 DADGKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
...... ....+.+.+.+|.+++..
T Consensus 125 ~~~~~~-----~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 125 AEKQNI-----RIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHTTE-----EECHHHHHHHHTSCEEEC
T ss_pred hhhhhH-----HHHHHHHHHhcCCCEEEE
Confidence 321111 123678888888776554
No 164
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.88 E-value=0.03 Score=50.24 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=34.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+++|+++ |-.|+||||++..|+..|...|..+..+|.|.-
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4567776 889999999999999999888999988887754
No 165
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.88 E-value=0.21 Score=43.29 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=42.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+.++|+|+......+....+..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.....
T Consensus 48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---- 122 (166)
T 3q72_A 48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP-IILVGNKSDLVRSR---- 122 (166)
T ss_dssp EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCC-EEEEEECTTCCSSC----
T ss_pred EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccccccc----
Confidence 456788999864332222222234567787776553 44566666666655543 455 56788997754321
Q ss_pred ccCCchHHHHHHHhCC
Q 009721 355 PFGRGSGSQVVQQFGI 370 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (527)
....+..+.+.+.++.
T Consensus 123 ~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 123 EVSVDEGRACAVVFDC 138 (166)
T ss_dssp CSCHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHhCC
Confidence 1122334556666664
No 166
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.88 E-value=0.19 Score=45.03 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=41.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCc
Confidence 56789999998742211122222446788888887653 466666655554432 3455 56888997643
No 167
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.82 E-value=0.5 Score=41.82 Aligned_cols=69 Identities=6% Similarity=-0.036 Sum_probs=40.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+... ....+-+|.|+++..
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 35678999998742211122222446788888887654 4566666665554332 223467888997643
No 168
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=94.78 E-value=0.14 Score=53.06 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=48.7
Q ss_pred cCCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 278 ~~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+..+.+.|+|||+...........+..+|.+++|+.....++. ...+.+..+...+++.+-+++|+++..
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 157 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT 157 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence 4678899999987544333333445578999999988776544 445566666777876567889998754
No 169
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.77 E-value=0.17 Score=53.10 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=45.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|||+--.........+..+|.+++|+..+... .......+..+...+.+.+-+|+|+++..
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 5688999999864332333333455789999998876532 13445566667777877677889998754
No 170
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.77 E-value=0.31 Score=43.10 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=40.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc---CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.. .+. .+-+|.|+++..
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 128 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI-VIILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECcccc
Confidence 3578999998743322222222446788888887654 455555555544443 233 467888998753
No 171
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=94.76 E-value=0.28 Score=54.19 Aligned_cols=88 Identities=19% Similarity=0.047 Sum_probs=62.9
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGR 358 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~ 358 (527)
++|-+=|||||+......-...++..+|.+++|+....--...+...++.+.+.+++.+ +++|+++..... -.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~~a~------~~ 155 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQGAN------FL 155 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSSTTCC------HH
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEccccccCcc------HH
Confidence 45678899999876544333444667899999998877767778889999998899964 566996532211 12
Q ss_pred chHHHHHHHhCCCeE
Q 009721 359 GSGSQVVQQFGIPHL 373 (527)
Q Consensus 359 ~~~~~~~~~~g~~~l 373 (527)
...+++.+.++...+
T Consensus 156 ~~~~ei~~~l~~~~~ 170 (709)
T 4fn5_A 156 RVVEQIKKRLGHTPV 170 (709)
T ss_dssp HHHHHHHHHHCSCEE
T ss_pred HHHHHhhhhccccee
Confidence 467888888886543
No 172
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.76 E-value=0.61 Score=41.58 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+.... ...+-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence 35678999998743222222222446788888877654 45555566666665432 22467888997753
No 173
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.72 E-value=0.14 Score=53.15 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=46.3
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|||+.-.........+..+|.+++|+....... ......+..+...+++.+-+++|+++.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999998743322222333456899999988765432 245566667777888866788899774
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.68 E-value=0.049 Score=56.87 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CCCCEEEEeCCCCCC-----hh---hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTG-----DI---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~-----~~---~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
....+.|+|||+-.. .. ......+..+|.+++|+.....-...-..+.+.+++.+.++ -+|.|+++.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 566788999976211 00 01112234578888887765432233345667777777774 477799764
No 175
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.67 E-value=0.035 Score=50.82 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=35.0
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
..+.+|++. |..|+||||++..||..|...|..+..+|.|..
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345677777 899999999999999999877887788897753
No 176
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.65 E-value=0.26 Score=46.20 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=16.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA 195 (527)
..|+++ |..||||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 467777 899999999976664
No 177
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.64 E-value=0.33 Score=43.59 Aligned_cols=82 Identities=12% Similarity=0.168 Sum_probs=47.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (527)
+++.+.++|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++....
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~---- 139 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP-FVILGNKIDAPNA---- 139 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC----
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC----
Confidence 34678999998643221121122346788888877654 456666666555533 2455 5688899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
...+++.+.++.
T Consensus 140 -----~~~~~~~~~~~~ 151 (190)
T 1m2o_B 140 -----VSEAELRSALGL 151 (190)
T ss_dssp -----CCHHHHHHHTTC
T ss_pred -----CCHHHHHHHhCC
Confidence 134566666654
No 178
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.63 E-value=0.48 Score=42.13 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|||+...........+..+|.+++|...+. .++..+...+..+... ....+-+|.|+++.
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCC
Confidence 45678999997743211111112345788888877654 3566666555444332 22346788899764
No 179
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.62 E-value=0.3 Score=42.81 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHH-H---cCCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-S---KLKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l-~---~~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+ + ..+.+ +-+|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccc
Confidence 4678899998743221111111335688888876654 3555555544443 2 23555 56888997753
No 180
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=94.60 E-value=0.17 Score=54.64 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=50.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 359 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (527)
.|.+.|+|||+...........+..+|.+++|+.............+..+...+++ +-+++|+++...... ..
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~------~~ 144 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPSADV------DR 144 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH------HH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccccCH------HH
Confidence 47888999987543322223335678999999887554333344445555566777 567789976432110 12
Q ss_pred hHHHHHHHhCC
Q 009721 360 SGSQVVQQFGI 370 (527)
Q Consensus 360 ~~~~~~~~~g~ 370 (527)
..+++.+.++.
T Consensus 145 v~~el~~~lg~ 155 (600)
T 2ywe_A 145 VKKQIEEVLGL 155 (600)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHhhCC
Confidence 35566666654
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.58 E-value=0.035 Score=50.73 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=31.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.+.++ |..|+||||++..++..+...|.+|+.+++.
T Consensus 56 ~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 56 GLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 45555 8999999999999999999989999988764
No 182
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.57 E-value=0.028 Score=52.01 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=34.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
++++|++. |-.|+||||++..|+..|. ..|+++..+|.|.
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 34677776 8899999999999999998 7799999998764
No 183
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.49 E-value=0.5 Score=41.61 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=38.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|+|+...........+..+|.+++|.... ..++..+...+..+... ....+-+|.|+++.
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 3467889999874322112222234568888887764 34566666665555432 22346788899764
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.48 E-value=0.027 Score=50.59 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=30.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~ 210 (527)
+.+.++ |..|+||||++..++..+. ..|.+|+.+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 466666 8999999999999999998 78888877654
No 185
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.2 Score=44.67 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=41.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC---CCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.... ...+-+|.|+++.
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 35678999998743221222222446788888887654 45556666666665432 2346688899775
No 186
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.47 E-value=0.86 Score=41.18 Aligned_cols=86 Identities=10% Similarity=0.135 Sum_probs=49.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..... .
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~NK~Dl~~~~----~ 151 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI-VQLLIGNKSDLSELR----E 151 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTC-EEEEEEECTTCGGGC----C
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECCcccccc----c
Confidence 3678999998743322222222456788998887654 4566666666555542 33 356788997653211 1
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 152 v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 152 VSLAEAQSLAEHYDI 166 (201)
T ss_dssp SCHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCC
Confidence 112335556666654
No 187
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.46 E-value=0.023 Score=51.18 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++|+|. |-.|+||||++..||..|...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 456655 8899999999999999998888656667654
No 188
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.36 E-value=0.29 Score=44.30 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI-VVILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC-EEEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEECCCcc
Confidence 3678999998631111111112445788888877654 4555555555555432 33 366888998753
No 189
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.33 E-value=0.28 Score=43.79 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCEEEEeCCCCCChh-hhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccccCCCccc
Q 009721 280 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~-~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~~~~~~~ 353 (527)
.+.+.|+|+|+.-... .+....+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~--- 143 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAI--- 143 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccc---
Confidence 4678999998732111 111222446788888887654 455555555444432 2455 56888997753211
Q ss_pred cccCCchHHHHHHHhCCC
Q 009721 354 YPFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~ 371 (527)
....+..+.+.+.++.+
T Consensus 144 -~v~~~~~~~~~~~~~~~ 160 (189)
T 1z06_A 144 -QVPTDLAQKFADTHSMP 160 (189)
T ss_dssp -CSCHHHHHHHHHHTTCC
T ss_pred -eeCHHHHHHHHHHcCCE
Confidence 11223455666666653
No 190
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.30 E-value=0.1 Score=49.70 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=16.9
Q ss_pred eEEEEeeCcCCChhHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA 195 (527)
..|+|+ |..|+||||+.-.|.
T Consensus 23 ~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 23 LRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHh
Confidence 457777 899999999987664
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.30 E-value=0.052 Score=48.90 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+|++. |-.|+||||++..|+..|...|..|+-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 88999999999999999988898876544
No 192
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.24 E-value=0.23 Score=47.65 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=51.1
Q ss_pred CCCCEEEEeCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC-CCEEEEEEecccccCC
Q 009721 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDAD 349 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~--------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~-~~~~gvV~N~~~~~~~ 349 (527)
+++.+.|+|||+...... ........+|.+++|+..... .........+...+ .+ +-+|+|+++....
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKN-IILVLNKFDLLKK 124 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCS-EEEEEECHHHHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCC-EEEEEEChhcCcc
Confidence 456789999987432111 111111357888888876653 33334444445556 66 4588899764321
Q ss_pred CccccccCCchHHHHHHHhCCCeEEe
Q 009721 350 GKRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
.. .. ...+.+.+.+|.+++..
T Consensus 125 ~~----~~-~~~~~l~~~lg~~~~~~ 145 (271)
T 3k53_A 125 KG----AK-IDIKKMRKELGVPVIPT 145 (271)
T ss_dssp HT----CC-CCHHHHHHHHSSCEEEC
T ss_pred cc----cH-HHHHHHHHHcCCcEEEE
Confidence 10 11 13778889999876544
No 193
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.45 Score=43.86 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~-piilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV-AVGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C-EEEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC-eEEEEEECcccc
Confidence 3678999998743222222222446788888877644 4566666666655543 33 366788997753
No 194
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.21 E-value=0.026 Score=51.69 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=28.7
Q ss_pred ccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 169 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+..++++|++. |-.|+||||++..|+..+ | ..++|.|.
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 44556777776 889999999999998877 4 34677775
No 195
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.17 E-value=0.26 Score=43.11 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4678999998743222222222446788888887643 4555555555544432 343 56888997753
No 196
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.15 E-value=0.75 Score=45.54 Aligned_cols=82 Identities=9% Similarity=0.102 Sum_probs=45.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHH-HcC---CCCEEEEEEecccccCCCccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL---KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l-~~~---~~~~~gvV~N~~~~~~~~~~~ 353 (527)
..+.+.|+|||+.-....+....+..+|.+++|...+ ..++..+...+..+ ... +. .+-+|.|+++....
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~-piilV~NK~Dl~~~---- 281 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA-VLLVFANKQDLPNA---- 281 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTC-EEEEEEECTTSTTC----
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCC-eEEEEEECccCCcc----
Confidence 4678999999874322222222234568888887764 44566655544433 322 34 36688899764321
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
...+++.+.++.
T Consensus 282 -----~~~~~i~~~~~~ 293 (329)
T 3o47_A 282 -----MNAAEITDKLGL 293 (329)
T ss_dssp -----CCHHHHHHHHTC
T ss_pred -----cCHHHHHHHhch
Confidence 235667777764
No 197
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.15 E-value=0.027 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.438 Sum_probs=27.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++|.+. |-.|+||||++..||..| |. -++|.|.
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d~ 35 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTDI 35 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEcccH
Confidence 56677777 789999999999998876 43 4678773
No 198
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.14 E-value=0.045 Score=51.47 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=30.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
+.+..|..|+|||+++.++|...+ +.|.+|++++++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 444459999999999999998754 5688999999885
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.12 E-value=0.029 Score=50.02 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=25.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+.+|-.|+||||++..||..| |...+.+|.|.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~ 38 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDS 38 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccch
Confidence 44555999999999999988765 44566667773
No 200
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.08 E-value=0.057 Score=52.68 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=33.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~ 212 (527)
.+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 36 ~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 36 EVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred eEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 466666 999999999999999999876 88999998874
No 201
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.05 E-value=0.045 Score=58.55 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=34.8
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+++|.++ |..|+||||++..|+..|..+|+++.++|.|.
T Consensus 371 ~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 34566666 88999999999999999999999999999884
No 202
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.03 E-value=0.17 Score=51.86 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=46.7
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.|+|||+.-.........+..+|.+++|+...... .......+..++.++.+.+-+++|+++.
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 67999999874333333333455789999998877653 6667777777777777556788999764
No 203
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.02 E-value=0.65 Score=44.29 Aligned_cols=89 Identities=9% Similarity=0.018 Sum_probs=52.9
Q ss_pred CCCCEEEEeCCCCCChhh--------hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCC
Q 009721 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~--------~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~ 350 (527)
+.+.+.|+|+|+...... ........+|.+++|+..+.. .........+.+.+.+ +-+|+||++.....
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~p-vilv~NK~Dl~~~~ 126 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKK-VILAMTAIDEAKKT 126 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCC-EEEEEECHHHHHHT
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCC-EEEEEECcCCCCcc
Confidence 457899999987432211 111111357888888877653 2233455566667777 45788997753211
Q ss_pred ccccccCCchHHHHHHHhCCCeEEe
Q 009721 351 KRYYPFGRGSGSQVVQQFGIPHLFD 375 (527)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~g~~~l~~ 375 (527)
. .. ...+.+.+.+|.+++..
T Consensus 127 ~----i~-~~~~~l~~~lg~~vi~~ 146 (258)
T 3a1s_A 127 G----MK-IDRYELQKHLGIPVVFT 146 (258)
T ss_dssp T----CC-BCHHHHHHHHCSCEEEC
T ss_pred c----hH-HHHHHHHHHcCCCEEEE
Confidence 1 11 23678888899766544
No 204
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.99 E-value=0.65 Score=41.67 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=46.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
+.+.+.|+|+|+.-.........+..+|.+++|..... .++..+...+..+... ....+-+|.|+++....
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~----- 145 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA----- 145 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-----
Confidence 45789999998743221121122446788888877643 4566666665554432 12346788899764321
Q ss_pred ccCCchHHHHHHHhCC
Q 009721 355 PFGRGSGSQVVQQFGI 370 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~ 370 (527)
...+++.+.++.
T Consensus 146 ----~~~~~i~~~~~~ 157 (192)
T 2b6h_A 146 ----MPVSELTDKLGL 157 (192)
T ss_dssp ----CCHHHHHHHTTG
T ss_pred ----CCHHHHHHHhCc
Confidence 124566666653
No 205
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.96 E-value=0.28 Score=43.93 Aligned_cols=68 Identities=10% Similarity=0.155 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccCC
Confidence 35678999998743222222222345688888877654 4555555554444332 445 56888997754
No 206
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.95 E-value=0.25 Score=43.35 Aligned_cols=88 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCC-CCEEEEEEecccccCCCccccccC
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-VPCIAVVENMCHFDADGKRYYPFG 357 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~-~~~~gvV~N~~~~~~~~~~~~~~~ 357 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+.... ...+-+|.|+++..... ...
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~ 132 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK----VVE 132 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGC----CSC
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhc----ccC
Confidence 3678999998732211111222445788888877644 45556665655554422 23356888997643211 112
Q ss_pred CchHHHHHHHhCCC
Q 009721 358 RGSGSQVVQQFGIP 371 (527)
Q Consensus 358 ~~~~~~~~~~~g~~ 371 (527)
......+.+.++.+
T Consensus 133 ~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 133 TEDAYKFAGQMGIQ 146 (181)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCe
Confidence 23455666666653
No 207
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.95 E-value=0.36 Score=43.71 Aligned_cols=67 Identities=9% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 346 (527)
+++.+.++|+|+......+....+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 34678999998743211121122346788888877644 466666666655533 2455 5678899764
No 208
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.92 E-value=0.5 Score=42.20 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=46.9
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc------CCCCEEEEEEecccccCCCcc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDADGKR 352 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~------~~~~~~gvV~N~~~~~~~~~~ 352 (527)
.+.+.|+|+|+.-....+. ..+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++.....
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 143 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP-ALLLGNKLDMAQYR-- 143 (187)
T ss_dssp EEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGC--
T ss_pred EEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCC-EEEEEECcchhhcC--
Confidence 4678899998642211111 1234578888887665 4466666666655543 2555 56888997753211
Q ss_pred ccccCCchHHHHHHHhCC
Q 009721 353 YYPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 353 ~~~~~~~~~~~~~~~~g~ 370 (527)
....+..+++.+.++.
T Consensus 144 --~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 144 --QVTKAEGVALAGRFGC 159 (187)
T ss_dssp --SSCHHHHHHHHHHHTC
T ss_pred --ccCHHHHHHHHHHcCC
Confidence 1112345556666654
No 209
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.88 E-value=0.07 Score=48.23 Aligned_cols=34 Identities=29% Similarity=0.250 Sum_probs=28.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
.|++. |-.|+||||++..|+..|...|.+|+..+
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 46666 88899999999999999999999987554
No 210
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.87 E-value=0.055 Score=56.33 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~ 212 (527)
.++.++ |..|+||||++.++|...+. .|.+|+++++..
T Consensus 201 ~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~ 239 (444)
T 2q6t_A 201 SLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM 239 (444)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 345544 99999999999999999997 589999999974
No 211
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.87 E-value=0.35 Score=43.66 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=40.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC---CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...++.+... +.+ +-+|.|+++.
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 467899999875433222222244578888888765 34556666655555543 455 5688899775
No 212
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.84 E-value=0.027 Score=50.35 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=25.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++|++. |-.|+||||++..||..| | ..++|.|.
T Consensus 3 ~m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 3 LAKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp --CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 45566666 889999999999998876 3 35678774
No 213
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.84 E-value=0.24 Score=45.52 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=39.1
Q ss_pred CCCCEEEEeCCCCCChh-----------h---hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecc
Q 009721 279 GELDYLVIDMPPGTGDI-----------Q---LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~-----------~---~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~ 344 (527)
+.+.+.|+|||+ .+.. . ..+.....+|.+++|+.............++.+...+.++ -+|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEecc
Confidence 567899999986 3221 0 0111122356688887765432233445667777777774 5778997
Q ss_pred cc
Q 009721 345 HF 346 (527)
Q Consensus 345 ~~ 346 (527)
+.
T Consensus 155 Dl 156 (223)
T 4dhe_A 155 DK 156 (223)
T ss_dssp GG
T ss_pred cc
Confidence 64
No 214
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.79 E-value=0.093 Score=54.41 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=35.2
Q ss_pred CCCCEEEEeCCCCCC-------h-hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTG-------D-IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~-------~-~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
++..+.|+|||+-.. . .......+..+|.+++|+.... .+..+ ....+.++..+.+ +-+|+|+++..
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d-~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCC-EEEEEECccCc
Confidence 556788999976421 0 1111222345788888876643 22222 3455666666776 45788997743
No 215
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.76 E-value=0.55 Score=44.39 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=36.9
Q ss_pred CCCCEEEEeCCCCCChhh---------hh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC------CCCEEEEE
Q 009721 279 GELDYLVIDMPPGTGDIQ---------LT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 340 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~---------~~---~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~------~~~~~gvV 340 (527)
+...++|+|||+-..... +. ......+|.+++|+..+..... ....++.+.+. +. .+-++
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~-~iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKW-MVIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGG-EEEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhcc-EEEEE
Confidence 466799999987422100 00 0112467888888887654322 23444444432 33 35677
Q ss_pred Eeccccc
Q 009721 341 ENMCHFD 347 (527)
Q Consensus 341 ~N~~~~~ 347 (527)
.|+.+..
T Consensus 146 ~nK~Dl~ 152 (247)
T 3lxw_A 146 TRKEDLA 152 (247)
T ss_dssp ECGGGGT
T ss_pred EchHhcC
Confidence 8987653
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.73 E-value=0.041 Score=58.25 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=33.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~ 212 (527)
.++ ++.+..|+||||++.++|..++.. |.+|+++++..
T Consensus 243 ~l~-li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 243 EVI-MVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CEE-EEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred eEE-EEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 345 455999999999999999999987 99999999975
No 217
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.46 Score=42.66 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=40.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+... .......+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~ 145 (196)
T 2atv_A 75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVT-LILVGNKADLD 145 (196)
T ss_dssp EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGGG
T ss_pred EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCc-EEEEEECcccc
Confidence 56788999987543 2222222345788888887654 455555555544443 3455 56888997754
No 218
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.65 E-value=0.067 Score=55.84 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=33.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~ 212 (527)
.++.++ |..|+||||++.++|..++. .|.+|+++++..
T Consensus 204 ~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455555 99999999999999999986 689999999885
No 219
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.64 E-value=0.084 Score=63.27 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
++++.|+ +-.|+||||++.++|...++.|.+|++||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4566665 9999999999999999999999999999998643
No 220
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=93.63 E-value=0.23 Score=46.82 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=40.1
Q ss_pred cceEEEEeeCc-CCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCC
Q 009721 172 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (527)
Q Consensus 172 ~~kvIav~s~K-GGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~ 217 (527)
+||-|.|++|- .|.||-.+|+.|+..|..+|+||..+-.||+-+--
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNvD 68 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINID 68 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceeec
Confidence 46778887764 89999999999999999999999999999987543
No 221
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.61 E-value=0.078 Score=49.28 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=32.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+.++ |..|+||||++..+|..+...|.++..++++.
T Consensus 53 ~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 345555 88999999999999999999999999998854
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.59 E-value=0.063 Score=48.72 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+++.+ .|--|+||||++..++..+..+|++|+++-.
T Consensus 4 ~i~vi-~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~ 39 (184)
T 2orw_A 4 KLTVI-TGPMYSGKTTELLSFVEIYKLGKKKVAVFKP 39 (184)
T ss_dssp CEEEE-EESTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEE-ECCCCCCHHHHHHHHHHHHHHCCCeEEEEee
Confidence 34444 4888999999999999999999999999753
No 223
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.58 E-value=0.38 Score=49.81 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=36.6
Q ss_pred CCCCEEEEeCCCCCCh---------hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccc
Q 009721 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~---------~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~~~ 345 (527)
++..+.|+|||+-... .......+..+|.+++|+.... .+..+ ..+.++++..+.++ -+|.|+++
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d-~~i~~~l~~~~~p~-ilv~NK~D 121 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKSTVDT-ILVANKAE 121 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHHTCCE-EEEEESCC
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHcCCCE-EEEEeCCC
Confidence 4556888999773211 0112223456788888877543 22221 23445555556664 57889965
No 224
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.57 E-value=0.49 Score=40.99 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=45.1
Q ss_pred CCCEEEEeCCCCCChhh-hhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCccc
Q 009721 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRY 353 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~-~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~ 353 (527)
.+.+.|+|+|+.-.... +.......+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++.....
T Consensus 50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~--- 125 (169)
T 3q85_A 50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLARSR--- 125 (169)
T ss_dssp EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCGGGC---
T ss_pred EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcchhhcc---
Confidence 46788999977432211 11111234688888776544 4555555555554432 455 45788997753211
Q ss_pred cccCCchHHHHHHHhCC
Q 009721 354 YPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 354 ~~~~~~~~~~~~~~~g~ 370 (527)
....+..+.+.+.++.
T Consensus 126 -~~~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 126 -EVSLEEGRHLAGTLSC 141 (169)
T ss_dssp -CSCHHHHHHHHHHTTC
T ss_pred -cCCHHHHHHHHHHcCC
Confidence 1122345566666665
No 225
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.51 E-value=0.18 Score=55.54 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=39.4
Q ss_pred CCEEEEeCCCCCCh----hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 281 LDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 281 yD~IIID~pp~~~~----~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++.|||||+ ++. .......+..+|.+++|+.++.. +..+...+.+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999976 222 11222224468999999887543 334433333455555666 66788997753
No 226
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.49 E-value=0.04 Score=49.52 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++.|.++ |-.|+||||++..||..| |. -++|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~--~~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KR--ILYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 35567666 779999999999998877 43 3566664
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.48 E-value=0.067 Score=46.71 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
...+.++ |..|+||||++..++..+...|+++..++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3466666 8899999999999999998889889888764
No 228
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.44 E-value=0.046 Score=50.38 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=28.6
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHH-----HCC-CcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA-----~~G-~rVllID~D 211 (527)
.||+++.|+ |..|+|||+.|..++..++ +.| ++|.+...|
T Consensus 3 ~~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 3 AMAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp -CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred cceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 356666655 9999999999999877765 567 555555544
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.42 E-value=0.11 Score=47.44 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
++++.++ |--|+||||.+..+|..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555554 88889999999999999999999999995
No 230
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.39 E-value=0.028 Score=50.59 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+++|.++ |-.|+||||+|..||..| |.. ++|.|.
T Consensus 1 M~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 1 MAPKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp -CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 34566666 889999999999998876 443 678874
No 231
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.34 E-value=0.066 Score=47.57 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|.+. |-.|+||||++..|+.. ......||.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3455555 99999999999888762 23466777764
No 232
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.32 E-value=0.41 Score=43.18 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCCc
Confidence 34678999998742211111122345788888887643 445555554444332 2444 56788997754
No 233
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=93.26 E-value=0.16 Score=58.43 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=45.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|||+-.............+|.+++|+.............+..+...+++.+-+++|+++..
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999987322222222234568999999887654444455556666677888667889997643
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.26 E-value=0.1 Score=47.85 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
++|++. |-.|+||||++..||..|...|.+|..++
T Consensus 10 ~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 10 ALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 567666 78999999999999999998899885543
No 235
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.22 E-value=0.1 Score=62.48 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=34.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+.+|.++ +..|+||||++.++|..+++.|.+|+++++.-.
T Consensus 732 G~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 732 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 3456555 999999999999999999999999999998853
No 236
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=93.13 E-value=0.21 Score=53.94 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=49.6
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccccCCCccccccCCc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRG 359 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~ 359 (527)
.|.+.|+|||+...........+..+|.+++|+.............+..+...+++ +-+|+|+++..... ...
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~------~~~ 142 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD------PER 142 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC------HHH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEeeeccCccccc------HHH
Confidence 57889999987543222222335567999999876543222333444444556777 55778997653321 013
Q ss_pred hHHHHHHHhCC
Q 009721 360 SGSQVVQQFGI 370 (527)
Q Consensus 360 ~~~~~~~~~g~ 370 (527)
..+++.+.++.
T Consensus 143 v~~ei~~~lg~ 153 (599)
T 3cb4_D 143 VAEEIEDIVGI 153 (599)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhCC
Confidence 45667777764
No 237
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.36 Score=43.11 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=16.2
Q ss_pred EEEEeeCcCCChhHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA 195 (527)
.|+|+ |..||||||+...|.
T Consensus 50 ~i~vv-G~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIA-GPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEE-CCTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 57777 889999999987664
No 238
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.96 E-value=1.2 Score=40.01 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=38.9
Q ss_pred CCCCEEEEeCCCCCChhhhh---hhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcC-----CCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~---~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~ 346 (527)
..+.+.|+|+|+.-...... ...+..+|.+++|...+.........+...+... +.+ +-+|.|+++.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~Dl 141 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMN-FEVFIHKVDG 141 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCc-EEEEEecccc
Confidence 46789999998753321111 1224467999999877664333333333333322 344 5688899763
No 239
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.95 E-value=0.12 Score=62.66 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.++.++ +..|+||||++.++|..+++.|.+|++||+.-..
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 3456655 9999999999999999999999999999998633
No 240
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.92 E-value=0.098 Score=55.60 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=33.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++.+|. ..|-.|+||||++..||..|...|.++.+++.|.
T Consensus 34 ~~~lIv-lvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIV-MVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEE-EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEE-EECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 344554 4599999999999999999998899999999885
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.90 E-value=0.14 Score=47.04 Aligned_cols=40 Identities=33% Similarity=0.422 Sum_probs=33.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+.+|+|. |..|+||||++..|+..+...|.++..|..|.+
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 3578877 899999999999999999876777888887753
No 242
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.88 E-value=0.12 Score=47.20 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=29.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+++|++. |-.|+||||++..||..|...+.+|.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567766 77899999999999999998888885543
No 243
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.86 E-value=0.87 Score=42.15 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=52.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCcccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
..+.+-|.||++.-....+.-.-...++.+++|... +..++..+...+..+... ++ .+-+|.|+++.....
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~-piilVgNK~Dl~~~r---- 134 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV-IIMLVGNKTDLADKR---- 134 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS-EEEEEEECTTCGGGC----
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC-eEEEEeeccchHhcC----
Confidence 456778999976432222222224456777777654 456777777777666543 33 466888997643311
Q ss_pred ccCCchHHHHHHHhCCC
Q 009721 355 PFGRGSGSQVVQQFGIP 371 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g~~ 371 (527)
....+..+++++.++.+
T Consensus 135 ~V~~~e~~~~a~~~~~~ 151 (216)
T 4dkx_A 135 QVSIEEGERKAKELNVM 151 (216)
T ss_dssp CSCHHHHHHHHHHHTCE
T ss_pred cccHHHHhhHHHHhCCe
Confidence 12234567788888754
No 244
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.82 E-value=0.27 Score=55.40 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=44.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|||||+...........+..+|.+++|+.............+..+...++++ -+|+|+++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCcc
Confidence 4678999999885443223333356789999998876543333445555555667775 4788997643
No 245
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=92.81 E-value=0.23 Score=52.23 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=44.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|||+.-.........+..+|.+++|+.............+..++..+++. -+++|+++.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 4578999999773221122223345689999998876543344555666777788887 788899764
No 246
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.76 E-value=3.5 Score=36.44 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcC----CCCEEEEEEecccccCCCcccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDADGKRYY 354 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~~~~~~~~ 354 (527)
.+.+.|+|+++.-... . +..+|.+++|...+ ..++..+...+..+... +.+ +-+|.|+++.......
T Consensus 66 ~~~l~i~Dt~G~~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~-- 137 (184)
T 3ihw_A 66 SYLLLIRDEGGPPELQ---F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP-MVLVGTQDAISAANPR-- 137 (184)
T ss_dssp EEEEEEEECSSSCCHH---H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC-EEEEEECTTCBTTBCC--
T ss_pred EEEEEEEECCCChhhh---e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccccc--
Confidence 4567889997643322 1 23468888876654 44567767777776654 344 4588899765311110
Q ss_pred ccCCchHHHHHHHhC
Q 009721 355 PFGRGSGSQVVQQFG 369 (527)
Q Consensus 355 ~~~~~~~~~~~~~~g 369 (527)
....+..+++.+.++
T Consensus 138 ~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 138 VIDDSRARKLSTDLK 152 (184)
T ss_dssp CSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcC
Confidence 122234566666665
No 247
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.71 E-value=2 Score=39.15 Aligned_cols=68 Identities=4% Similarity=-0.071 Sum_probs=41.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHH-HHHHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~-~~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+++.-....+....+..+|.+++|...+. .++.. ....+..+... +.+ +-+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR-VLLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 45778999998743222222222446788888877654 45555 45555666543 344 56788997753
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.67 E-value=0.095 Score=52.53 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=32.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
+.++.|+ |..|+||||++.++|...+. .|.+|++||++.
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3455555 99999999999999998654 588999999985
No 249
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.64 E-value=0.074 Score=48.69 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=26.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++|+++ |..|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 45678887 8899999999888865 4654 568875
No 250
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=92.60 E-value=0.31 Score=49.91 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=41.5
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.|+|||+...........+..+|.+++|+...... .......+..++.++.+.+-+++|+++.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 57899999873221222222344679999998876432 3444455556666676656788999764
No 251
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=92.56 E-value=0.31 Score=51.34 Aligned_cols=68 Identities=12% Similarity=0.083 Sum_probs=43.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++.+.|+|||+.-............+|.+++|+..+..........+..+...++| +-+++|+++..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~ 116 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP 116 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence 345688999987433222222234467889998876553333444556666677888 56888998753
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.55 E-value=0.13 Score=50.75 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=32.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D 211 (527)
+-+.++ |..|+|||+++..+|..+. +.|++|+.+.+.
T Consensus 153 ~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 153 KGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 456665 8899999999999999999 999999998764
No 253
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.49 E-value=0.1 Score=56.12 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCC-CcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G-~rVllID~D~ 212 (527)
.+++|.|+ |-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 34566666 8899999999999999999888 8999999875
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.49 E-value=0.076 Score=52.73 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=32.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~ 212 (527)
+.++.|+ |..|+||||++.++|...+.. |.+|++||++.
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3466666 889999999999999987655 78999999985
No 255
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.46 E-value=0.12 Score=49.82 Aligned_cols=38 Identities=34% Similarity=0.414 Sum_probs=29.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC----------CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~----------G~rVllID~D~ 212 (527)
.+++++ |..|+||||++.++|..++.. +.+|++++...
T Consensus 31 ~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 31 TVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 467766 999999999999999977642 35777777653
No 256
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=92.46 E-value=0.87 Score=49.04 Aligned_cols=67 Identities=12% Similarity=0.056 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|||+...........+..+|.+++|+..+..-.......+..+...++| +-+++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vP-iIVViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCe-EEEEecccccc
Confidence 34699999987533222222224457999999887663333445566677778888 45788998754
No 257
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.44 E-value=0.059 Score=49.24 Aligned_cols=33 Identities=36% Similarity=0.425 Sum_probs=25.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|++|+++ |..|+||||++..||. + | +-++|+|.
T Consensus 1 m~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~ 33 (204)
T 2if2_A 1 MKRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK 33 (204)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence 3577777 8899999999988876 4 5 45677764
No 258
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.37 E-value=2 Score=38.08 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-....+....+..+|.+++|..... .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 135 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDLR 135 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTST
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 4678899998743222222222445788888887644 4555655 455555543 555 55888997653
No 259
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.35 E-value=1.7 Score=37.75 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHc-------CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCccc
Confidence 4678999998743322222222445788888776544 345555544444432 3445 56888997753
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.35 E-value=0.098 Score=49.96 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|++|++. |-.|+||||+|..||..+ |. .+++.|.
T Consensus 1 M~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred CeEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 3556655 889999999999998766 33 4677775
No 261
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.34 E-value=0.13 Score=46.94 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=26.9
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
++|+|. |-.|+||||++..||..|...| +|...+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 456655 8899999999999999998777 664443
No 262
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.33 E-value=2.1 Score=36.50 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+...........+..+|.+++|...+ ..++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCc-EEEEEECcccc
Confidence 4567899999874322222222233568888887654 3455555555544433 2555 56888997653
No 263
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.32 E-value=0.097 Score=46.95 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=26.7
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|+++|++. |-.|+||||++..||..+ | ...+|+|
T Consensus 4 ~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 4 SKPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 355677776 889999999999988766 4 3567775
No 264
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.27 E-value=0.11 Score=51.92 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=27.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
++|+|+ |-.|+||||+|..||..|. +.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 455555 8899999999999988763 788999964
No 265
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.24 E-value=0.29 Score=47.85 Aligned_cols=68 Identities=13% Similarity=0.086 Sum_probs=38.7
Q ss_pred CCCCEEEEeCCCCCC-------------hhhhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcCCCCEEEEEEec
Q 009721 279 GELDYLVIDMPPGTG-------------DIQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKLKVPCIAVVENM 343 (527)
Q Consensus 279 ~~yD~IIID~pp~~~-------------~~~~~~~~~~a~d~viiV~~p~~~--s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (527)
..++++|+|||+-.. ........+..+|.+++++.+... .......+++.+...+.++ -+|+|+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~-i~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT-IGVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSE-EEEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcE-EEEEcC
Confidence 357899999987432 011112224467888887765221 1122235666666667764 567799
Q ss_pred cccc
Q 009721 344 CHFD 347 (527)
Q Consensus 344 ~~~~ 347 (527)
++..
T Consensus 208 ~Dl~ 211 (315)
T 1jwy_B 208 LDLM 211 (315)
T ss_dssp TTSS
T ss_pred cccC
Confidence 7643
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.24 E-value=0.057 Score=47.81 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=26.1
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+++|+++ |..|+||||++..||..+ |. ..+|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEeccH
Confidence 44577777 889999999998887765 33 5677763
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.18 E-value=0.15 Score=50.63 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=33.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH--CCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~--~G~rVllID~D~~~ 214 (527)
+.+|++. |-.|+||||++..|+..+.. .+.+|.++..|.+.
T Consensus 92 p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 92 PYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 4577777 88999999999999988874 35689999999753
No 268
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.15 E-value=0.1 Score=48.80 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
.+++++ |..|+||||++..+|...+. .+.+|+++|...
T Consensus 25 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 467776 89999999999999986443 367899999875
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.14 E-value=0.11 Score=51.59 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
+|.++|+++ |-.|+||||++..||..+ ...+||+|-.
T Consensus 3 ~m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 345556555 889999999999998755 3678999853
No 270
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.06 E-value=1 Score=40.10 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=50.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC-CCCEEEEEEecccccCCCccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~-~~~~~~l~~~-~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+ ...+..++.. ....+-+|.|+++....... .
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~ 146 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD--D 146 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT--C
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC--c
Confidence 34667999998743222222222446788888877654 445554 3444555433 22245688899875432111 1
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+++.+.++.+
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 147 VTKQEGDDLCQKLGCV 162 (194)
T ss_dssp CCHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHhcCCC
Confidence 2234566777777764
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.02 E-value=0.1 Score=47.55 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.2
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
...|++|+|. |-.|+||||++..||..+ |. ..+|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 3456677776 889999999999888754 54 567776
No 272
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.95 E-value=0.15 Score=50.25 Aligned_cols=41 Identities=29% Similarity=0.298 Sum_probs=33.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH--HCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA--~~G~rVllID~D~~~ 214 (527)
+.+|+++ |..|+||||++..|+..+. -.+.+|.+|++|-..
T Consensus 80 g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 80 PYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 4588888 8899999999999998876 345579999998643
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.93 E-value=0.054 Score=49.76 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.8
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+|+|. |-.|+||||++..|+..|...|.+|.++..
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56666 788999999999999999888888887753
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.86 E-value=0.21 Score=60.82 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|.++ |-.|+||||+|.++|...+++|.+|++||++-
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4566665 99999999999999999999999999999884
No 275
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.86 E-value=0.18 Score=44.60 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=26.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHH-------CCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~-------~G~rVllID~ 210 (527)
+.+.++ |..|+||||++..+|..+.. .|.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345555 99999999999999999876 3555555544
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.84 E-value=0.11 Score=47.27 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+++|++. |-.|+||||++..||..| .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 3567777 889999999999998877 4677776653
No 277
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.81 E-value=0.11 Score=46.62 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=24.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+++|.+. |-.|+||||++..||..| |.. ++|.|
T Consensus 5 ~~~I~l~-G~~GsGKST~~~~L~~~l---~~~--~i~~D 37 (193)
T 2rhm_A 5 PALIIVT-GHPATGKTTLSQALATGL---RLP--LLSKD 37 (193)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHc---CCe--EecHH
Confidence 3455555 889999999999998877 544 45655
No 278
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.74 E-value=0.14 Score=55.37 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=35.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
++++|.|+ |-.|+||||++..||..|..+|.++..+|.|.-.
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR 92 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 92 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh
Confidence 34566665 8999999999999999999999999999877543
No 279
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.74 E-value=0.061 Score=58.14 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=34.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|||+-..........+..+|.+++|+...... .......+..+..++++.+-+|+|+++..
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999874322212222234568888777654321 23344556667778887677889998753
No 280
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=91.62 E-value=0.45 Score=50.56 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=39.8
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCC--CCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-.........+..+|.+++|+.... .......+..+...+ .++ -+|.|+++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~--~~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT--DSNKHYWLRHIEKYGGKSPV-IVVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--GGGHHHHHHHHHHHSSSCCE-EEEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--chhHHHHHHHHHHhCCCCCE-EEEEECCCcc
Confidence 46789999998732221111111335788888886543 344555666666543 664 5888997753
No 281
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.60 E-value=1.3 Score=44.34 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCCh-------------hhhhhhhhcCCCeEEEEeCCCcc--hHHHHHHHHHHHHcCCCCEEEEEEecc
Q 009721 280 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKLKVPCIAVVENMC 344 (527)
Q Consensus 280 ~yD~IIID~pp~~~~-------------~~~~~~~~~a~d~viiV~~p~~~--s~~~~~~~~~~l~~~~~~~~gvV~N~~ 344 (527)
..++.|+|||+-... ..+....+..++.+++++.+... .......+++.+...+.+.+ +|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999873221 11222224467878887765322 22334445555555566654 567997
Q ss_pred ccc
Q 009721 345 HFD 347 (527)
Q Consensus 345 ~~~ 347 (527)
+..
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 754
No 282
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.59 E-value=0.082 Score=48.03 Aligned_cols=35 Identities=37% Similarity=0.404 Sum_probs=26.3
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 6 ~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 6 KHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 345677777 88999999998887763 54 5678884
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.57 E-value=0.12 Score=45.41 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=24.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|++. |-.|+||||++..||..+ |+. .+|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 456665 889999999999888766 443 467774
No 284
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.56 E-value=0.65 Score=48.24 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=40.2
Q ss_pred CCCCEEEEeCCCC---------CChhh--hhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPG---------TGDIQ--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~---------~~~~~--~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
++..+.|+|||+- ..... .....+..+|.+++|+...........+.+.++...+.+ +-+|.|+++..
T Consensus 241 ~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~ 319 (456)
T 4dcu_A 241 NQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKA-VVIVVNKWDAV 319 (456)
T ss_dssp TTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCE-EEEEEECGGGS
T ss_pred CCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEEChhcC
Confidence 3446788888762 11111 111123456888888776554444455666777776766 45788998754
No 285
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.50 E-value=1.6 Score=38.58 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=39.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+......+....+..+|.+++|...+. .++..+ ...+..+... +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34678999998742211111222446788888877643 455555 3444555442 344 56888997754
No 286
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.50 E-value=0.089 Score=47.62 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|++. |-.|+||||++..||..| | ...+|.|.
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d~ 45 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTGE 45 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHHH
Confidence 4567776 889999999999998877 3 35677763
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.45 E-value=0.11 Score=47.50 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=25.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|++. |-.|+||||++..||..| |.. .+|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcchH
Confidence 4567666 899999999999999877 443 456663
No 288
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.42 E-value=1.4 Score=39.64 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=38.3
Q ss_pred CCCEEEEeCCCCCChhh-hhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHc----CCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~-~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+++...... +....+..+|.+++|...+ ..++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeechhcc
Confidence 45678889976432211 1111123468888877654 3456666666655543 2455 45788997653
No 289
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.37 E-value=0.13 Score=50.31 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=31.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCC--CcEEEE-EeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G--~rVllI-D~D~~ 213 (527)
+.+|+|. |..|+||||++..|+..|...| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3577777 8899999999999999998654 445544 88864
No 290
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.37 E-value=0.21 Score=44.27 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|+++ |-.|+||||++..|+..+ | ...+|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 4567666 889999999999988776 4 35678774
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.33 E-value=1.4 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID 209 (527)
.+|+|+ |..|+||||+...++..+... |.+++.+.
T Consensus 124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 466666 899999999999999888764 66665554
No 292
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.29 E-value=0.19 Score=46.42 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
|++-|+|= |--|+||||.+..|+..|. +|++|++.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56778877 7789999999999999996 588887753
No 293
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.28 E-value=0.2 Score=46.91 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=34.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEEeCCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID~D~~~ 214 (527)
.++.|+|. |--|+||||++..|+..|.. .|++|.++--.|.+
T Consensus 20 ~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 20 GSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 35666666 88999999999999999998 99999885555543
No 294
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.20 E-value=0.15 Score=46.42 Aligned_cols=35 Identities=31% Similarity=0.264 Sum_probs=26.2
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.++++|++. |-.|+||||++..||..+ |.. ++|+|
T Consensus 18 ~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d 52 (201)
T 2cdn_A 18 GSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG 52 (201)
T ss_dssp CSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 344566666 889999999999998877 444 56665
No 295
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.19 E-value=0.86 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=24.0
Q ss_pred CeEEEEeCCCc-chHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 306 TAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 306 d~viiV~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
|.+++|+.... .+... ...++.+...+.+ +-+|.|+++..
T Consensus 107 ~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~p-~i~v~nK~Dl~ 147 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDD-VQMYEFLKYYGIP-VIVIATKADKI 147 (195)
T ss_dssp EEEEEEEETTSCCCHHH-HHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred CEEEEEEECCCCCCHHH-HHHHHHHHHcCCC-EEEEEECcccC
Confidence 67777766543 33332 3445666666776 56788997643
No 296
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=91.17 E-value=0.43 Score=50.71 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=46.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|||+.-.........+..+|.+++|+..+..........+..+...++| +-+++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vP-iIVViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP-IVLAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCC-EEECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEeccccc
Confidence 34678899987433222222224457899999988776666677778888888888 56788998753
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.14 E-value=0.14 Score=45.87 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++|++. |-.|+||||++..||..+ |. ..||.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 455555 899999999999988765 44 457776
No 298
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.09 E-value=0.2 Score=45.91 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=30.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+.+|+++ |..|+||||++-.|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4578888 77899999999998887643 68999998754
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.07 E-value=0.11 Score=47.51 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=27.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
++++|+++ |..|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 35678877 7789999999887765431 5889999964
No 300
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.97 E-value=0.14 Score=48.80 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=28.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
+++|.+. |-.|+||||++..|+..+ |..+.++|.|...
T Consensus 32 ~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 3455554 899999999999988765 3456788988644
No 301
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.95 E-value=0.11 Score=47.40 Aligned_cols=34 Identities=32% Similarity=0.457 Sum_probs=26.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.++|+++ |-.|+||||++..||..| | +-++|.|.
T Consensus 2 ~~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 2 RGIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 3467776 889999999999988876 3 45678774
No 302
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.81 E-value=0.89 Score=46.44 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=41.9
Q ss_pred CCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 281 yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+.+.|+|||+.-............+|.+++|+..+... .......+..++.++.+.+-+++|+++..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV 148 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence 67999999873221111222234569999998876432 34444555566667776577889997753
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.80 E-value=1.7 Score=43.85 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=29.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~ 210 (527)
..+|+|+ |..|+||||+...|+..+... ..+|+.++-
T Consensus 136 g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4577777 889999999999999988764 457777763
No 304
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.76 E-value=0.17 Score=53.36 Aligned_cols=39 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH-C-CCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~-~-G~rVllID~D~ 212 (527)
+.+|.|+ |-.|+||||++..||..|.. . |+.+-++|.|.
T Consensus 395 ~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4566665 88899999999999999987 6 47788999987
No 305
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.71 E-value=0.2 Score=44.20 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG 200 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~ 200 (527)
-+.+ .|..|+||||++..+|..+..
T Consensus 45 ~vll-~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPIL-LGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEE-ESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 4544 489999999999999999876
No 306
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.64 E-value=0.14 Score=44.86 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVl 206 (527)
+|++. |-.|+||||++..| .+.|..++
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence 55555 99999999999888 56677654
No 307
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=90.58 E-value=2 Score=39.40 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCCCh-hhhhhhhhcCCCeEEEEeCC-CcchHHHHHHHHHHHHcC----CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~-~~~~~~~~~a~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~~~~~ 347 (527)
.+.++++|++...+. ..+.......++.+++|..- +..++..+......+... +.+ +-+|.|+++..
T Consensus 86 ~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p-iilVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP-IILVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC-EEEEEECTTCG
T ss_pred eeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEChHHh
Confidence 345678888653321 11111112235677766544 456777776666655543 455 56888997753
No 308
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.56 E-value=0.29 Score=45.40 Aligned_cols=36 Identities=31% Similarity=0.265 Sum_probs=30.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
++.|+|. |--|+||||.+..|+..|...|++|.+..
T Consensus 6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 3566665 88999999999999999999999997664
No 309
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.39 E-value=0.16 Score=50.18 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH------------HCC----CcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA------------~~G----~rVllID~D~~ 213 (527)
.++.|+ |..|+||||++.++|...+ ..| .+|++||++-.
T Consensus 99 ~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 99 SVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 455555 8899999999999998743 245 79999999853
No 310
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.36 E-value=2.1 Score=38.81 Aligned_cols=69 Identities=9% Similarity=-0.033 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHH-HHHHHHHHcC-CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL-KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~-~~~~~~l~~~-~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+......+....+..+|.+++|...+. .++..+ ...+..+... ....+-+|.|+++..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 34678999998742211122222446788888877654 455555 3444555442 223466888997753
No 311
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.29 E-value=0.78 Score=40.20 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 125 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVP-IVLVGTKLDLR 125 (182)
T ss_dssp ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhh
Confidence 456779999874332222222244578888888765 34566655 455555543 455 55888997753
No 312
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.29 E-value=0.37 Score=44.07 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=17.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAY 196 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~ 196 (527)
..|+|+ |..|+||||+...|..
T Consensus 13 ~~i~~~-G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIA-GPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHhc
Confidence 356667 8999999999876653
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.22 E-value=0.21 Score=44.88 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=25.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|.++ |..|+||||++..||..+ .| .-++|+|-
T Consensus 11 ~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d~ 44 (184)
T 1y63_A 11 INILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVGK 44 (184)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHHH
Confidence 456666 889999999998888752 24 46678873
No 314
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.19 E-value=0.3 Score=45.75 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
+.++++. |..|+||||+...++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4578877 8999999999999997555 6678888888764
No 315
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.11 E-value=0.11 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+++. ..|.+|+||||+|.++|.. .|.+|++++++
T Consensus 124 sviL-I~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMVI-VTGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEE-EECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEEE-EEcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 4454 5599999999999999987 67899999983
No 316
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=90.09 E-value=0.36 Score=51.58 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=40.4
Q ss_pred CEEEEeCCCCCCh-----------hhhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 282 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 282 D~IIID~pp~~~~-----------~~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
.++|||||+-... .......+..+|.+++|+.+... ........++.+...+.+ +-+|+|+++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~p-vilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDK-IRVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGG-EEEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCC-EEEEEECCCcc
Confidence 5899999874320 11111123457999999988663 334455666666665555 56888997643
No 317
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.03 E-value=0.71 Score=43.94 Aligned_cols=20 Identities=50% Similarity=0.604 Sum_probs=16.5
Q ss_pred EEEEeeCcCCChhHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA 195 (527)
.|++. |..|+||||+.-.|.
T Consensus 38 ~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEE-ECTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 56666 999999999987765
No 318
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.02 E-value=0.18 Score=49.08 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~ 214 (527)
.+.+.+|-.|+||||++..|+..+ +.....||+|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R 70 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK 70 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhH
Confidence 456666999999999999987755 2245778887543
No 319
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.93 E-value=0.22 Score=45.39 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+|+++ |.-|+||||++..||..+ | .-+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 467777 789999999999888754 5 467898854
No 320
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.92 E-value=1 Score=39.52 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=39.7
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 122 (186)
T 1mh1_A 52 PVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 122 (186)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHHH
T ss_pred EEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCC-EEEEeEccccc
Confidence 4567899998642221122222445788888887654 4555554 455555543 555 56888997643
No 321
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.91 E-value=0.15 Score=44.78 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+|.+. |-.|+||||++..|+..| |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 46665 889999999999998876 443 567774
No 322
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.91 E-value=0.23 Score=48.15 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=26.5
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+++|+|+ |-.|+||||++..|+ . .|. -+||+|.
T Consensus 73 ~~~~iI~I~-G~~GSGKSTva~~La-~---lg~--~~id~D~ 107 (281)
T 2f6r_A 73 SGLYVLGLT-GISGSGKSSVAQRLK-N---LGA--YIIDSDH 107 (281)
T ss_dssp TTCEEEEEE-ECTTSCHHHHHHHHH-H---HTC--EEEEHHH
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHH-H---CCC--cEEehhH
Confidence 345677777 889999999999888 3 365 4578875
No 323
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.84 E-value=0.73 Score=41.78 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=40.6
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 35667799998742222222222446788888877644 4555554 455555544 455 56788997643
No 324
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.79 E-value=0.19 Score=46.57 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=24.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|+.|+|. |-.|+||||++..||..| |. -.+|+|
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 37 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY---GL--AHLSTG 37 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh---Cc--eEEehh
Confidence 3456666 889999999999999887 44 355664
No 325
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=89.67 E-value=0.2 Score=42.74 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=29.7
Q ss_pred cceeEEEEe-cCeeEEEEcCCCCcccCChHHHHhchhcC
Q 009721 482 IEPEEIRPM-GNYAVSITWPDGFSQIAPYDQLQTMERLV 519 (527)
Q Consensus 482 i~~~~~~~~-g~~al~i~w~Dgh~s~y~~~~L~~~~~~~ 519 (527)
..|+.+... .+..|.|.|+||+.+.|++.|||.-++-+
T Consensus 9 ~~p~~i~l~~~~~~L~v~w~DG~~~~~~~~wLRd~Cpca 47 (132)
T 2l6n_A 9 PKVTGLKLKRKSRQLEISFDNGQQFTLSCELLRVYSPSA 47 (132)
T ss_dssp CCEEEEEEEGGGTEEEEEETTSCEEEEEHHHHHHSCSCS
T ss_pred CCCeeEEEecCCCEEEEEECCCCEEEeCHHHHHhcCCCc
Confidence 446666665 34579999999999999999999986443
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.62 E-value=0.23 Score=43.65 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=25.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.+|.++ |-.|+||||++..||..| |.. ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 4577777 889999999999888776 444 567774
No 327
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.50 E-value=0.74 Score=42.69 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=30.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.+..++ |-=|+||||....++..+..+|++|+++-.
T Consensus 28 G~I~vit-G~M~sGKTT~Llr~~~r~~~~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECIT-GSMFSGKSEELIRRLRRGIYAKQKVVVFKP 64 (219)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceEEEEe
Confidence 4555544 667899999999999999999999999943
No 328
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.42 E-value=0.43 Score=43.60 Aligned_cols=33 Identities=30% Similarity=0.247 Sum_probs=28.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
|+|= |--|+||||.+..|+..|..+|++|.+..
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5554 77899999999999999999999998774
No 329
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.39 E-value=0.34 Score=45.41 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
+++.|+|. |-.|+||||++..|+..|.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 34677766 88999999999999999988 8888654
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.34 E-value=0.31 Score=44.33 Aligned_cols=34 Identities=32% Similarity=0.377 Sum_probs=26.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|+++ |-.|+||||++..|+..+ |. ..+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g~--~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---GL--EFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---CC--EEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---CC--eEEcccc
Confidence 3467766 899999999999999877 53 5677775
No 331
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=89.13 E-value=0.82 Score=47.14 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=47.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|||+-..........+..+|.+++|+.............+..+...+.+.+-+|+|+++..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 467799999977432222222335578999999887665455566666777777887677889997643
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.08 E-value=0.36 Score=45.50 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-----CCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-----G~rVllID~D~ 212 (527)
+.+|+++ |..|+||||++-.|+..+... ..++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 3588888 889999999999998877321 34678888874
No 333
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.04 E-value=0.28 Score=45.90 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=26.4
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
..++.|.|. |..|+||||++..||..| | ...+|+|
T Consensus 14 ~~~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d 48 (233)
T 1ak2_A 14 PKGVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG 48 (233)
T ss_dssp CCCCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence 344567776 889999999999999887 3 3466765
No 334
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.86 E-value=0.4 Score=47.20 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.+.++ |..|+||||++..+|..+...|.+++.++++
T Consensus 39 ~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45555 8899999999999999999889999999864
No 335
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.84 E-value=0.39 Score=51.61 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=29.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
+.+..|-+|+||||++..++..+...|++|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 444559999999999999999999999999987
No 336
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.74 E-value=0.26 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=23.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.|.++ |-.|+||||++..||..+ |. ..+|.|
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~---~~--~~~~~d 43 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS---GL--KYINVG 43 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh---CC--eEEEHH
Confidence 456555 899999999999998776 43 456665
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.68 E-value=0.3 Score=45.14 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=25.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++.|.|. |-.|+||||++..||..| |. ..+|+|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence 3466666 889999999999998876 43 456764
No 338
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.63 E-value=0.86 Score=41.75 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=40.1
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-....+....+..+|.+++|...+. .++..+...+..+... +.+ +-+|.|+++..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 132 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCC-EEEEEECTTSS
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCccc
Confidence 45678999998732111111122345788888877654 3555555555555443 455 55888998754
No 339
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.56 E-value=0.3 Score=43.81 Aligned_cols=34 Identities=41% Similarity=0.451 Sum_probs=24.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++|++. |..|+||||++..||.. .+...+.+|.|
T Consensus 10 ~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 566666 89999999998888764 34445566655
No 340
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.54 E-value=0.38 Score=45.13 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC----CCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~----G~rVllID 209 (527)
+.|+|. |-.|+||||.+..|+..|... |++|.+.-
T Consensus 26 ~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 466665 889999999999999999988 99997553
No 341
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.40 E-value=0.31 Score=43.81 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+++|++. |-.|+||||++..||..| |. ..+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GY--THLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEcHH
Confidence 3567766 889999999999998876 44 366776
No 342
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.37 E-value=0.44 Score=44.99 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=29.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCc-EEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~r-VllI 208 (527)
++.|+|. |-.|+||||.+..|+..|...|++ |.+.
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3566666 788999999999999999999999 5554
No 343
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.26 E-value=0.3 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=24.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|.+. |-.|+||||++..|+..+ .| ...||.|.
T Consensus 2 ~~~I~l~-G~~GsGKST~a~~L~~~~--~~--~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILTI-GCPGSGKSTWAREFIAKN--PG--FYNINRDD 36 (301)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHS--TT--EEEECHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhC--CC--cEEecccH
Confidence 3455555 999999999999887732 23 56777773
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.17 E-value=0.36 Score=43.06 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=24.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+++|++. |-.|+||||++..||..+ |. ..+|+|
T Consensus 4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 3466666 889999999999998776 43 456765
No 345
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.17 E-value=0.39 Score=48.13 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC--------CCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~--------G~rVllID~D 211 (527)
+.+.++ |.+|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 345555 999999999999999998765 7888888864
No 346
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.07 E-value=1.4 Score=43.83 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=26.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
++|+++ |--|+||||++..||..| ..-+||+|-.
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM 74 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence 455555 889999999999888754 3578999954
No 347
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=88.01 E-value=0.3 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHH
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAY 196 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~ 196 (527)
.++|+|+ |-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 3678887 8999999999998885
No 348
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=87.87 E-value=0.82 Score=47.16 Aligned_cols=44 Identities=9% Similarity=-0.045 Sum_probs=27.5
Q ss_pred hcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 302 VVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 302 ~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+..+|.+++|+..... +..+ .+.+..+...+.+ +-+|+|+++..
T Consensus 255 ~~~ad~~llv~D~~~~~s~~~-~~~~~~~~~~~~~-iiiv~NK~Dl~ 299 (436)
T 2hjg_A 255 IDRSEVVAVVLDGEEGIIEQD-KRIAGYAHEAGKA-VVIVVNKWDAV 299 (436)
T ss_dssp HHHCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCE-EEEEEECGGGS
T ss_pred HHhCCEEEEEEcCCcCCcHHH-HHHHHHHHHcCCc-EEEEEECccCC
Confidence 3456888888776543 3333 3456666665655 56788997754
No 349
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.78 E-value=4 Score=36.68 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=40.4
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|+|+.-....+....+..+|.+++|..... .++..+. ..+..+... +.+ +-+|.|+++..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVP-IVLVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHhh
Confidence 34678899998743221222222446788888887643 4555554 455555543 555 45888997643
No 350
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=87.76 E-value=0.56 Score=45.55 Aligned_cols=38 Identities=29% Similarity=0.245 Sum_probs=32.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.+.|+ |..|+||||+|..+|..+...+..+..+|+...
T Consensus 49 ~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 49 SFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 56666 889999999999999999887788999988653
No 351
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.67 E-value=0.2 Score=44.53 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVl 206 (527)
+++|.+. |-.|+||||++..||..| |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3456665 889999999999887654 55554
No 352
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.55 E-value=0.43 Score=43.95 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
+.++++. |..|+||||++..|+..+.. .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3577777 89999999999999986654 356788888764
No 353
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=87.49 E-value=1.7 Score=45.18 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchHH-------HHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.+.|+|||+.-.........+..+|.+++|+........ .....+..+...+++.+-+++|+++..
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999987443333333335578999999988754332 445556666777887677889998754
No 354
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.32 E-value=0.37 Score=49.30 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHH------CCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~------~G~rVllID~D~ 212 (527)
+.++.|+ |..|+||||++.+|+..... .+.+|++||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4567776 89999999999999876653 467899999874
No 355
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=87.24 E-value=0.57 Score=43.40 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCC-cEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~-rVllI 208 (527)
+.|+|- |--|+||||.+..|+..|...|+ .|.+.
T Consensus 4 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 567666 88899999999999999999998 66544
No 356
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.21 E-value=0.46 Score=46.81 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=25.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+.+.+|-.|+||||++..||..+ ..-+|++|-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence 344556889999999999988754 357888884
No 357
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=87.20 E-value=1.1 Score=43.87 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=39.2
Q ss_pred CCCCEEEEeCCCCCCh-----hhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC-----CCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~-----~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~~~~ 347 (527)
+.+.+.|+|||+.... .......+..+|.+++|...+. .+...+....+.+..+ +.+ +-+|.|+++..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 4567899999764211 0111111345788988887654 4556665444333332 444 66888997643
No 358
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.12 E-value=0.47 Score=46.20 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.0
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.+.++ |..|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 355565 889999999999999888 677787775
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=86.96 E-value=0.34 Score=44.79 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|+.|.|. |-.|+||||++..||..|. . ..+|.|
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l~---~--~~i~~d 37 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKYQ---L--AHISAG 37 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHHC---C--EECCHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC---C--ceecHH
Confidence 4456666 8899999999999998763 2 445654
No 360
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.94 E-value=0.43 Score=47.63 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=30.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC---CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~---G~rVllID~D~ 212 (527)
..+.++ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 46 NNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 455555 999999999999999988765 77888888653
No 361
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.89 E-value=0.46 Score=47.61 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~ 212 (527)
+.++.++ |..|+||||++..++..++.. |.+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4577777 889999999999999987532 35889999864
No 362
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.85 E-value=0.75 Score=43.12 Aligned_cols=40 Identities=13% Similarity=-0.055 Sum_probs=32.7
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|+++..+ .|.-|.||||-+..++..+..+|+||+++-.-
T Consensus 17 ~~g~l~v~-~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~ 56 (234)
T 2orv_A 17 TRGQIQVI-LGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 56 (234)
T ss_dssp -CCEEEEE-ECCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred CceEEEEE-ECCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 45565554 48888999999999999999999999999743
No 363
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=86.85 E-value=0.46 Score=43.82 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=24.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++|+++ |..|+||||++..||..+ | +-.+|.|
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~---g--~~~~d~g 37 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL---Q--WHLLDSG 37 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCc
Confidence 578887 889999999999888765 3 3456765
No 364
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.79 E-value=0.3 Score=42.02 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=27.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.++ |..|+|||++|..++....+.+...+ +++..
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 4455 88999999999999887766677777 77753
No 365
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.68 E-value=0.44 Score=42.98 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
.|++. |-.|+||||++..||..|.
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred EEEEE-CCCccCHHHHHHHHHHhcC
Confidence 46666 8899999999999998773
No 366
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.63 E-value=0.39 Score=44.16 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=23.2
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|+|. |..|+||||++..||..+ |..+ +|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d 32 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG 32 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence 35555 889999999999998877 5544 5653
No 367
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=86.61 E-value=0.65 Score=48.26 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=28.5
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCC-cEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~-rVllID 209 (527)
..++.|-.|+||||++..++..|...|. +|+++-
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a 81 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAA 81 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence 4455588999999999999999999887 677763
No 368
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.54 E-value=0.82 Score=44.91 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=26.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+++|+ .+|-.|+||||++..||..+ ..-+|.+|-
T Consensus 9 ~~~~i~-i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIF-LMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCEEEE-EECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCcEEE-EECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 344554 55999999999999998764 356788885
No 369
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.49 E-value=0.33 Score=45.08 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=24.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++.|+|. |-.|+||||++..||..+ |. ..+|+|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence 3466666 889999999999888755 44 456664
No 370
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.47 E-value=0.43 Score=42.77 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=23.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
|+.+|++. |..|+||||++..|+. ..+. ...+|.|
T Consensus 1 mg~ii~l~-G~~GaGKSTl~~~L~~---~~~g-~~~i~~d 35 (189)
T 2bdt_A 1 MKKLYIIT-GPAGVGKSTTCKRLAA---QLDN-SAYIEGD 35 (189)
T ss_dssp CEEEEEEE-CSTTSSHHHHHHHHHH---HSSS-EEEEEHH
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHhc---ccCC-eEEEccc
Confidence 34566666 8899999999999975 2222 2455655
No 371
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=86.47 E-value=0.63 Score=50.67 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
++++-|-+|+|||++.+++...|.++|.+||+.-.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 67777999999999999999999999999998753
No 372
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.29 E-value=0.55 Score=44.27 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=24.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+++|.+. |-.|+||||+|..|+..+ | ...+|+|
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~---g--~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH---C--YCHLSTG 61 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEecH
Confidence 3456555 889999999999998766 4 3556664
No 373
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.24 E-value=0.74 Score=44.63 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=27.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCC----cEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~----rVllID~ 210 (527)
.-+.++ |..|+|||++|..+|..+...+. .++.+++
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 346666 88999999999999999987654 5555553
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.23 E-value=0.46 Score=43.54 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.0
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|+++ |-.|+||||+|..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY---EI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH---CC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEeeHH
Confidence 35555 889999999999998766 44 345664
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=86.23 E-value=0.87 Score=44.79 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-C-CcEEEEEeCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 213 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G-~rVllID~D~~ 213 (527)
+.+|++. |..|+||||++-.|+..+... | .+|.+|-.|..
T Consensus 90 g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4578887 889999999999999988753 4 57888888754
No 376
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.04 E-value=0.31 Score=44.19 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=25.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.++ |..|+||||++..++..+...+.++.++..
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 4444 899999999999999998765544433333
No 377
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.61 E-value=0.55 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+.+|++. |..|+||||++..||..+
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4578777 999999999999998776
No 378
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.46 E-value=0.81 Score=47.71 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=31.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
..+|.++ |-.|+||||++..||..|...+.++..++.|.
T Consensus 39 ~~~Ivlv-GlpGsGKSTia~~La~~l~~~~~~t~~~~~d~ 77 (469)
T 1bif_A 39 PTLIVMV-GLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 77 (469)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhccCCCceEEecch
Confidence 3445444 89999999999999999988888887777553
No 379
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=85.42 E-value=0.58 Score=48.12 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=34.1
Q ss_pred cceEEEEee---CcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC
Q 009721 172 ISNIVAVSS---CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (527)
Q Consensus 172 ~~kvIav~s---~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~ 218 (527)
.+|.|.|++ ..-|.||||+++.|+.+|.+.|+++.+- .+.||+.
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlG 88 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLG 88 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHH
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCC
Confidence 456676665 4779999999999999999999998764 3445543
No 380
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.01 E-value=0.54 Score=43.63 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=23.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|+|. |-.|+||||++..||..+ |. ..+++|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l---g~--~~i~~d 32 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY---SL--AHIESG 32 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEchH
Confidence 35555 889999999999999877 44 456664
No 381
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.95 E-value=0.55 Score=46.88 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=29.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~ 212 (527)
+.+.++ |..|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 345555 999999999999999998764 56677777643
No 382
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=84.82 E-value=7.8 Score=33.60 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+...........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++......
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-piilv~nK~Dl~~~~~---- 130 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV-EKMILGNKCDVNDKRQ---- 130 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC-EEEEEEEC--CCSCCC----
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC-CEEEEEECccCCccCc----
Confidence 3678999998743222222222446788888887654 4566666666655543 33 4568889977543211
Q ss_pred cCCchHHHHHHHhCC
Q 009721 356 FGRGSGSQVVQQFGI 370 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~ 370 (527)
...+..+++.+.++.
T Consensus 131 v~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 131 VSKERGEKLALDYGI 145 (183)
T ss_dssp SCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCC
Confidence 112345566666664
No 383
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=84.72 E-value=0.93 Score=45.31 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D~ 212 (527)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 45555 999999999999999988776 67888888654
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=84.68 E-value=0.87 Score=41.76 Aligned_cols=32 Identities=47% Similarity=0.595 Sum_probs=24.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|+++ |--|+||||++..||. .|. -++|+|.
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 467766 8899999999888865 464 5678874
No 385
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=84.51 E-value=1.3 Score=40.34 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=32.4
Q ss_pred cccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 168 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
....|+++..++ |.-|+||||-....+.....+|+||+++-..
T Consensus 15 ~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 15 GSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp ----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 344566755555 7788999999999999888999999999744
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.37 E-value=0.92 Score=48.05 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.++++. |..|+||||++..++..++..|.+++.++..
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3567766 8999999999999999998889999888764
No 387
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=84.35 E-value=0.72 Score=42.32 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=21.0
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
.++++|+|+ ||.|+||+|+|--+...+
T Consensus 9 ~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 345677777 999999999998776544
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.34 E-value=0.5 Score=43.35 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.|.++ |-.|+||||+|..||..+ |. ..+|+|
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 32 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY---GI--PHISTG 32 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS---SC--CEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEeHH
Confidence 35555 889999999999887654 44 456664
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.09 E-value=0.82 Score=42.46 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
.+++|.+. |-.|+||+|.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 35677777 889999999999998766
No 390
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.90 E-value=0.78 Score=47.46 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=30.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC--CCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~--G~rVllID~D 211 (527)
+-+.++ |..|+||||++..+|..+... |.+++.+++.
T Consensus 131 ~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 445555 889999999999999998765 7888888765
No 391
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=83.86 E-value=1 Score=45.60 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=30.3
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.|+ |..|+||||+...++..+...|.+|+++|.+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4444 8899999999999999998889999999765
No 392
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.43 E-value=0.77 Score=48.97 Aligned_cols=39 Identities=38% Similarity=0.458 Sum_probs=31.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCC-CcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G-~rVllID~D~ 212 (527)
+.+|+++ |..|+||||++..||..|...+ .++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4677777 8899999999999999997554 5787888774
No 393
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=83.24 E-value=1 Score=48.72 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=27.1
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHH----CCCcEEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 208 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~----~G~rVllI 208 (527)
-+.+..|..|+||||+...+...|.+ .|.+|+++
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 35566699999999999999988874 46677775
No 394
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=83.08 E-value=2.1 Score=42.67 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCCChh---------hhhhhhhcCCCeEEEEeCCCcc---hHHHHHHHHHHHHc-C-CCCEEEEEEeccc
Q 009721 280 ELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 345 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~---------~~~~~~~~a~d~viiV~~p~~~---s~~~~~~~~~~l~~-~-~~~~~gvV~N~~~ 345 (527)
.+++.++|||+-.... .........+|.+++|+..+.. +.......+..+.. . +.+ +-+|.|+++
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLP-FLVVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCC-EEEEEECcc
Confidence 4578899997643210 0111112246888888875443 45555555555543 2 455 557889965
Q ss_pred c
Q 009721 346 F 346 (527)
Q Consensus 346 ~ 346 (527)
.
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
No 395
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=82.99 E-value=1.4 Score=43.90 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCEEEEeCCCCC-------ChhhhhhhhhcCCCeEEEEeCCC----cchHHHHHHHHHHHHcC-----CCCEEEEEEecc
Q 009721 281 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (527)
Q Consensus 281 yD~IIID~pp~~-------~~~~~~~~~~~a~d~viiV~~p~----~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~~ 344 (527)
+.++|+|+|.-. +.....+..+..++.+++|+..+ ..++..+..+.+.+..+ +.+ .-+|+|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p-~ilV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP-QIIVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSC-BCBEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCC-EEEEEECc
Confidence 578999997611 11111122233478888888765 35667777777777654 344 46788997
Q ss_pred cc
Q 009721 345 HF 346 (527)
Q Consensus 345 ~~ 346 (527)
+.
T Consensus 285 Dl 286 (342)
T 1lnz_A 285 DM 286 (342)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 396
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.87 E-value=0.84 Score=42.00 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+|.|. |.+|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 46666 889999999999998765
No 397
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=82.77 E-value=1.8 Score=45.37 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=39.2
Q ss_pred ceEEEEeeCc-CCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Q 009721 173 SNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (527)
Q Consensus 173 ~kvIav~s~K-GGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s 216 (527)
+|-|.|++|- .|.||-.+|+.|+..|..+|+||.++-.||+-|-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnv 47 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINV 47 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceee
Confidence 6778888764 8889999999999999999999999999998754
No 398
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=82.67 E-value=0.93 Score=42.71 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.3
Q ss_pred ccccCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 167 ~~~~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
.....|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+..
T Consensus 16 ~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp ------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred ccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 445667899999988888886 678889999999999997754
No 399
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=82.63 E-value=2.3 Score=40.40 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=38.3
Q ss_pred ceEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC
Q 009721 173 SNIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (527)
Q Consensus 173 ~kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~~~s~~ 218 (527)
||-|.|++| -.|.||=.+|+.|+..|..+|+||-++-+||+-|.-+
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPYlNvD~ 69 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINIDA 69 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSSCCC-
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccceecCC
Confidence 466666644 7889999999999999999999999999999875433
No 400
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=82.60 E-value=1.5 Score=44.82 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
..++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 48 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 48 APFVFTVA---GTNGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SSEEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEe---CCcChHHHHHHHHHHHHHCCCCEEEE
Confidence 35799999 56789999999999999999999877
No 401
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=82.50 E-value=0.74 Score=41.04 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+++|+++ |..|+||||++-.|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3566666 899999999999887754
No 402
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.47 E-value=0.86 Score=46.04 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.5
Q ss_pred eCcCCChhHHHHHHHHHHHHHC------CCcEEEEEeCC
Q 009721 180 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (527)
Q Consensus 180 s~KGGvGKTT~a~nLA~~LA~~------G~rVllID~D~ 212 (527)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 5999999999999999988763 66788888753
No 403
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.15 E-value=0.77 Score=43.60 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=29.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.++ |..|+|||++|..++..+.+.+..++.+++..
T Consensus 32 vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 32 VLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp EEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred EEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 4555 89999999999999988777777888888764
No 404
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=82.08 E-value=2.4 Score=44.06 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=33.4
Q ss_pred CCCCEEEEeCCCCCChh--------hhhhhhhcCCCeEEEEeCCCcchHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~--------~~~~~~~~a~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++.+.|+|||+-.... ..+...+..+|.+++|+..+.........+++.+.. .+ +-+|.|+++..
T Consensus 270 ~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSS
T ss_pred CCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCC
Confidence 56778999997731110 011112345788888887765332333444444443 33 56788997643
No 405
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=81.98 E-value=1.8 Score=45.23 Aligned_cols=68 Identities=4% Similarity=-0.106 Sum_probs=33.7
Q ss_pred CCCCEEEEeCCCCCChhh---------hhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~---------~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
+++.+.|+|||+- .... .+...+..+|.+++|+..+.. +........+.++.+....+-+|.|+++..
T Consensus 279 ~g~~l~liDT~G~-~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~ 356 (476)
T 3gee_A 279 DKTMFRLTDTAGL-REAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRA 356 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSC
T ss_pred CCeEEEEEECCCC-CcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCC
Confidence 4567999999763 2211 111224467889988876543 222222333334443334467888997653
No 406
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=81.86 E-value=1.8 Score=41.36 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHC-CCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~-G~rVllID~D 211 (527)
+.+++|+ |..|+||||+...|+..+... ..+|.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 4577777 889999999999999888653 4467665544
No 407
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=81.52 E-value=1.8 Score=40.67 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=25.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
-|.++ |..|+||||+|..+|..+ +.++..+++.
T Consensus 41 ~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 41 GALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp EEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 45555 889999999999998865 5667666654
No 408
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.38 E-value=0.9 Score=48.62 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=27.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHH---HH-CCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~L---A~-~G~rVllID~D~ 212 (527)
.++|+|+ |-||+||||+|..++... .. ....|..++++.
T Consensus 147 ~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 147 PGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 4667666 999999999999987653 22 223577787764
No 409
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.17 E-value=0.71 Score=42.03 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
++|+|. |..|+||||++-.|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 456665 889999999999988766
No 410
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.10 E-value=1 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+++|++. |-.|+||||++..|+..+
T Consensus 8 g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 4567766 889999999998887654
No 411
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=80.92 E-value=1.7 Score=44.60 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.9
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
.++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 39 ~~vI~Vt---GTnGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVT---GTNGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEE---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 4699999 56789999999999999999999987
No 412
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.88 E-value=1.1 Score=40.47 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.8
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G 202 (527)
+++++ |..|+||||+...|+..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 57777 9999999999999999988667
No 413
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.86 E-value=1 Score=42.65 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
.+.+|++. |-.|+||||++-.||..|
T Consensus 26 ~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 34688888 889999999999888654
No 414
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=80.50 E-value=3.6 Score=44.33 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=47.7
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcch-------HHHHHHHHHHHHcCCCCEEEEEEeccccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~~~~~ 347 (527)
..+.++|+|||+.-.........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999875443333333455689999999876532 13455666677778888778889997743
No 415
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=80.25 E-value=1.6 Score=42.99 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=28.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVll 207 (527)
.++|+|+ |--||||++.-++..|...|+++.+
T Consensus 108 ~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~~ 139 (326)
T 3eag_A 108 HWVLGVA---GTHGKTTTASMLAWVLEYAGLAPGF 139 (326)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCceE
Confidence 4799999 7789999999999999999998753
No 416
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=79.96 E-value=2.2 Score=43.98 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=30.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
..++|.|+ |=-||||++.-|+..|...|+||.++
T Consensus 51 ~~~vI~Vt---GTNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 51 APKIFTVA---GTNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEE---CCcChHHHHHHHHHHHHHCCCcEEEE
Confidence 45799999 66799999999999999999999886
No 417
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=79.90 E-value=1.1 Score=40.31 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
++|++. |..|+||||++-.|+..+
T Consensus 7 ~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 567777 889999999998887655
No 418
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.87 E-value=1.1 Score=44.21 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=28.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++++++ |.-|+||||+.-.|+... .|+|+.+|..|.
T Consensus 4 i~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 3455555 889999999987776543 689999998774
No 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=79.73 E-value=1.4 Score=50.34 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHH--HH-HCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~--LA-~~G~rVllID~D~ 212 (527)
.++|+|+ |-||+||||+|..++.. .. .-...++.++.+.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4678877 88999999999998853 23 3345688888764
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.68 E-value=1.3 Score=41.64 Aligned_cols=33 Identities=39% Similarity=0.530 Sum_probs=25.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.+|++. |-.|+||||++..||..| | ...+|.|.
T Consensus 10 ~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 10 LVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 466666 889999999999998876 3 34567664
No 421
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.52 E-value=1.5 Score=40.05 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=21.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~ 201 (527)
+.+.|+ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 355555 999999999999999888643
No 422
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=79.26 E-value=0.97 Score=40.66 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=25.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.|+ |-.|+||||+|..||.. |.+|+.|++..
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4445 77899999999998754 78999999875
No 423
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=79.21 E-value=1.3 Score=41.96 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=30.6
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.|++.|+++-+|.|+ .+|..|++.|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~-----aia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999887 56788999999999999774
No 424
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=79.15 E-value=1.8 Score=41.58 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=27.4
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
-+.++ |..|+|||++|..+|..+ +.++..+++..
T Consensus 52 ~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 52 NILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 45555 889999999999999887 56788887754
No 425
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.14 E-value=1.4 Score=39.42 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.3
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
.++++ |..|+||||+.-.|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 46666 8999999999999998874
No 426
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.05 E-value=1.7 Score=47.08 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.0
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID 209 (527)
+.++.|-.|+||||+.+.++..|.+ .+.+|++.-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4555688999999999999999887 678888763
No 427
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=78.99 E-value=6.3 Score=38.83 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=24.6
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+.++++. |..|+||||+...|+..+.... ..+.++
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3467777 7889999999888887665433 344554
No 428
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=78.86 E-value=1.2 Score=42.37 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.2
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++|+++ |..|+||||++..||..| |. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 3567777 889999999999998877 33 4677764
No 429
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=78.74 E-value=2.3 Score=44.56 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=30.9
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
..++|+|+ |=-||||++.-|+..|...|++|.++-
T Consensus 107 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~g 141 (498)
T 1e8c_A 107 NLRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVMG 141 (498)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEEC
Confidence 35799999 668999999999999999999998874
No 430
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=78.41 E-value=1.3 Score=39.79 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=20.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
+.+|+++ |-.|+||||++-.|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3577777 889999999999887764
No 431
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=78.27 E-value=5.3 Score=39.99 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLA 195 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA 195 (527)
++|+++ |..|+||||+.-.|+
T Consensus 180 ~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEE-CBTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHH
Confidence 457777 899999999977664
No 432
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=77.65 E-value=5 Score=38.86 Aligned_cols=66 Identities=14% Similarity=0.028 Sum_probs=38.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHH-HHHHHHHcC--CCCEEEEEEecccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHF 346 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~~~~ 346 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+. ..+..+... +.+ +-+|.|+++.
T Consensus 202 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 271 (332)
T 2wkq_A 202 PVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDL 271 (332)
T ss_dssp EEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHH
T ss_pred EEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhc
Confidence 4557799998742221222222446788888877644 4555554 344444433 555 5678899765
No 433
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.56 E-value=2.4 Score=39.77 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=23.5
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
-+.++ |..|+||||++..+|..+ +..+..++
T Consensus 47 ~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 47 GVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred eEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 46666 889999999999998866 44555554
No 434
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.51 E-value=0.82 Score=41.89 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=24.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|+++ |-.|+||||++..||..+ |. -++|+|.
T Consensus 4 ~~i~i~-G~~gsGkst~~~~l~~~~---g~--~~~~~d~ 36 (219)
T 2h92_A 4 INIALD-GPAAAGKSTIAKRVASEL---SM--IYVDTGA 36 (219)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CC--ceecCCh
Confidence 356665 889999999998887654 54 5678874
No 435
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=77.47 E-value=2.9 Score=41.14 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=29.4
Q ss_pred eEEEEeeC-cCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~-KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.||+|.|- -||+|||-++..|+..|. ++++.+|.=-
T Consensus 37 PVI~VGNitvGGTGKTP~vi~L~~~L~--~~~~~ilsRG 73 (315)
T 4ehx_A 37 PVISVGNLSVGGSGKTSFVMYLADLLK--DKRVCILSRG 73 (315)
T ss_dssp CEEEEEESBSSCCSHHHHHHHHHHHTT--TSCEEEEECC
T ss_pred CEEEECCEEeCCCChHHHHHHHHHHHh--hcCceEEeec
Confidence 58999876 799999999999999984 5677776544
No 436
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.23 E-value=2.4 Score=40.29 Aligned_cols=32 Identities=16% Similarity=-0.004 Sum_probs=23.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+-+.++ |..|+|||++|..+|..+ |..++.++
T Consensus 65 ~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~ 96 (272)
T 1d2n_A 65 VSVLLE-GPPHSGKTALAAKIAEES---NFPFIKIC 96 (272)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEE
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 345555 889999999999998874 55555554
No 437
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=77.21 E-value=2.8 Score=44.45 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.0
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
..++|+|+ |=.||||++.-|+..|...|++|.++-
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~g 179 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLIG 179 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEES
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEEC
Confidence 45799999 668999999999999999999998873
No 438
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.20 E-value=2.2 Score=43.73 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=29.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.|+ |..|+|||++...+...+...|.+|+++|..
T Consensus 56 ~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 56 LLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4444 7889999999888888888899999999864
No 439
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=77.18 E-value=10 Score=33.55 Aligned_cols=86 Identities=7% Similarity=-0.001 Sum_probs=47.1
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC------CCCEEEEEEecccccC-CCc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL------KVPCIAVVENMCHFDA-DGK 351 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~------~~~~~gvV~N~~~~~~-~~~ 351 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+. .++..+...+..+... +. .+-+|.|+++... ..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-piilv~nK~Dl~~~~~- 149 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPL-RAVLVANKTDLPPQRH- 149 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCC-EEEEEEECC--------
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCC-cEEEEEECcccchhhc-
Confidence 5678999998642222222222445788888887644 4556666666666542 33 4678889977533 11
Q ss_pred cccccCCchHHHHHHHhCC
Q 009721 352 RYYPFGRGSGSQVVQQFGI 370 (527)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~ 370 (527)
....+..+++.+.++.
T Consensus 150 ---~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 150 ---QVRLDMAQDWATTNTL 165 (208)
T ss_dssp ---CCCHHHHHHHHHHTTC
T ss_pred ---cCCHHHHHHHHHHcCC
Confidence 1112345566666663
No 440
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.13 E-value=1.8 Score=45.74 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=27.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.+.++ |-.|+||||+|..+|..+ |..++-+++.
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNAS 111 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTT
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCC
Confidence 455555 899999999999998877 7888877664
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=76.90 E-value=1.6 Score=39.97 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
++.|+|+ |..|+||||+|..| +++|. -+|..|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~L----a~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALEL----VQRGH--RLIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHH----HTTTC--EEEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHH----HHhCC--eEEecc
Confidence 3566666 89999999987765 45666 455555
No 442
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=76.90 E-value=1.6 Score=50.79 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=30.5
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHH----CCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~----~G~rVllID~D~ 212 (527)
...++|+|+ |-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 345778877 99999999999998876532 234677888754
No 443
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=76.79 E-value=2.1 Score=47.77 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.9
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 208 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllI 208 (527)
+.++.|-.|+||||+.+.++..|.+ .|.+|++.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4566699999999999999999887 67888876
No 444
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.75 E-value=1.9 Score=43.18 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=27.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
..|.++ |-.|+||||+|..+|..+ |.++..+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 345666 889999999999999876 67777777653
No 445
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=76.68 E-value=2.7 Score=43.96 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
.++|.|+ |=-||||++.-|+..|...|+||.++
T Consensus 64 ~~vI~Vt---GTNGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 64 YPSIHIA---GTNGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEe---CCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 4699999 55689999999999999999999765
No 446
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=76.65 E-value=2.5 Score=43.66 Aligned_cols=34 Identities=29% Similarity=0.438 Sum_probs=30.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
..++|+|+ |=-||||++.-|+..|...|++|.++
T Consensus 51 ~~~vI~VT---GTnGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIG---GTNGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SSEEEEEE---CSSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCEEEEE---CCcCHHHHHHHHHHHHHHCCCCEEEE
Confidence 34799999 56799999999999999999999987
No 447
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=76.60 E-value=1.8 Score=39.88 Aligned_cols=33 Identities=33% Similarity=0.428 Sum_probs=25.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.-|+++ |--|+||||++..|+ +.|. -+||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~----~~g~--~vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFA----ARGA--SLVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHH----HTTC--EEEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHH----HCCC--cEEECcH
Confidence 4568888 778899999988665 4575 4679986
No 448
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=76.35 E-value=1.7 Score=39.72 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=18.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
++|+ .+|..|+||||+...|+..+
T Consensus 20 ~~iv-l~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLV-LIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEE-EECCTTSSHHHHHHHHHHHC
T ss_pred CEEE-EECcCCCCHHHHHHHHHhhC
Confidence 4555 45999999999988887543
No 449
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=76.28 E-value=2.4 Score=41.54 Aligned_cols=35 Identities=20% Similarity=0.014 Sum_probs=26.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++.| .|-.|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i-~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLV-LGLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEE-ECCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 34444 5899999999999988765 34688888864
No 450
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=76.22 E-value=2 Score=39.97 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=26.1
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.+|+++ |-.|+||||++..||..| |. ..+|.|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l---g~--~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF---GF--TYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--ceecCCC
Confidence 3477777 889999999999888765 43 5678774
No 451
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=76.18 E-value=1.7 Score=41.01 Aligned_cols=29 Identities=21% Similarity=0.106 Sum_probs=21.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rV 205 (527)
|++|+++ |+.|+||||+|..|+.. .|..+
T Consensus 1 m~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 1 MKLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 4678887 78999999998776543 56655
No 452
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=76.16 E-value=1.8 Score=40.59 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=29.7
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 5678999998888886 57788999999999998654
No 453
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.01 E-value=2.6 Score=41.99 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=26.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.+-|.++ |..|+||||+|..+|..+ |..++.+++
T Consensus 117 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp CSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 3456666 889999999999998754 667766665
No 454
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=75.94 E-value=1.4 Score=41.08 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=20.9
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
+.|+|. |--|+||||++..|+..|.
T Consensus 3 ~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 567777 7799999999999988773
No 455
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.78 E-value=2.8 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.092 Sum_probs=24.4
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
.+.+.++ |..|+||||++..+|..+ +....-+++
T Consensus 54 ~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 3456666 899999999999888755 445554544
No 456
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=75.70 E-value=2.5 Score=40.23 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+-+.++ |..|+||||++..+|..+ +.++..+++
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 345555 889999999999887754 566666655
No 457
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=75.61 E-value=9.9 Score=34.13 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCc-chHHHHHHHHHHHHcC---CCCEEEEEEecccccCCCccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYYP 355 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~ 355 (527)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+... ....+-+|.|+++..... .
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~----~ 158 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR----E 158 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC----C
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc----c
Confidence 5678999998732222222222456788888887654 3445554444433321 123467888997653211 1
Q ss_pred cCCchHHHHHHHhCCC
Q 009721 356 FGRGSGSQVVQQFGIP 371 (527)
Q Consensus 356 ~~~~~~~~~~~~~g~~ 371 (527)
...+..+++.+.++.+
T Consensus 159 v~~~~~~~~~~~~~~~ 174 (217)
T 2f7s_A 159 VNERQARELADKYGIP 174 (217)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHCCCc
Confidence 1223455666666643
No 458
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.59 E-value=1.8 Score=40.24 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=26.5
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
.+++|+|. |.-|+||||++..|+.. |.+|.+..-+
T Consensus 19 ~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 35688888 88999999998877664 5677776544
No 459
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=75.57 E-value=2.2 Score=34.28 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCC-CcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G-~rVllID~D~ 212 (527)
+++.|+|+++ |++|. .++..|.+.| ++|.++|-++
T Consensus 4 ~~~~v~I~G~-G~iG~-----~~~~~l~~~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQ-----MIAALLKTSSNYSVTVADHDL 39 (118)
T ss_dssp TCEEEEEECC-SHHHH-----HHHHHHHHCSSEEEEEEESCH
T ss_pred CcCeEEEECC-CHHHH-----HHHHHHHhCCCceEEEEeCCH
Confidence 4567888877 88776 4566788889 9999998764
No 460
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=75.41 E-value=2.7 Score=41.37 Aligned_cols=27 Identities=7% Similarity=-0.005 Sum_probs=22.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~ 201 (527)
..+ +.+|..|+|||+++-.++..|.+.
T Consensus 46 ~~l-li~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 46 KLF-YITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CEE-EEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CeE-EEECCCCCCHHHHHHHHHHHHHHH
Confidence 344 455999999999999999999753
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=75.09 E-value=2.6 Score=37.61 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=19.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCc
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 204 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~r 204 (527)
+-|.|. |..|+||||+|..|. ++|++
T Consensus 17 ~gvli~-G~SGaGKStlal~L~----~rG~~ 42 (181)
T 3tqf_A 17 MGVLIT-GEANIGKSELSLALI----DRGHQ 42 (181)
T ss_dssp EEEEEE-ESSSSSHHHHHHHHH----HTTCE
T ss_pred EEEEEE-cCCCCCHHHHHHHHH----HcCCe
Confidence 456666 889999999987665 47875
No 462
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=74.88 E-value=1.4 Score=39.39 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.4
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
++++++ |..|+||||+.-.|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 456666 8899999999998887765
No 463
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=74.83 E-value=1.9 Score=39.85 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=29.7
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.|.++|.|+++-||.|+ .+|..|+++|++|.+++-+.
T Consensus 3 ~~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 3 GMKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp -CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 35678999988888886 67778889999999998653
No 464
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.80 E-value=3.5 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=25.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+-|.++ |..|+|||++|..+|..+ .+..+..+++
T Consensus 46 ~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp SEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred ceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 456666 889999999999999876 2455555554
No 465
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=74.61 E-value=7.8 Score=40.38 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=36.7
Q ss_pred CCCCEEEEeCCCCC-Chh--------hhhhhhhcCCCeEEEEeCCCcc-hHHHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGT-GDI--------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~-~~~--------~~~~~~~~a~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.++|+|||+-. ... ..+...+..+|.+++|+..+.. +..+ ..+++.+. +.+ +-+|.|+++.
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~il~~l~--~~p-iivV~NK~DL 362 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED-RKILERIK--NKR-YLVVINKVDV 362 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH-HHHHHHHT--TSS-EEEEEEECSS
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHH-HHHHHHhc--CCC-EEEEEECccc
Confidence 45678999998743 110 1122224467889988876443 3333 33444442 444 5688899765
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.49 E-value=1.8 Score=39.83 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=19.9
Q ss_pred EEEEeeCcCCChhHHHHHHHHHHH
Q 009721 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 175 vIav~s~KGGvGKTT~a~nLA~~L 198 (527)
-|.|+ |..|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 46555 999999999999999987
No 467
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.39 E-value=3 Score=42.39 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.3
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|+| +|-.|+||||++..||..+. .-+|.+|-
T Consensus 3 ~~i~i-~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVI-AGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEE-ECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 34554 58899999999999998773 34788884
No 468
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=74.16 E-value=2.5 Score=38.61 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=30.0
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHH-HCCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA-~~G~rVllID~D~ 212 (527)
.|||+|.|+++-||.|+ .++..|+ +.|++|.+++-++
T Consensus 3 ~mmk~vlVtGasg~iG~-----~~~~~l~~~~g~~V~~~~r~~ 40 (221)
T 3r6d_A 3 AMYXYITILGAAGQIAQ-----XLTATLLTYTDMHITLYGRQL 40 (221)
T ss_dssp CSCSEEEEESTTSHHHH-----HHHHHHHHHCCCEEEEEESSH
T ss_pred ceEEEEEEEeCCcHHHH-----HHHHHHHhcCCceEEEEecCc
Confidence 46788999988888886 5666777 7999999998764
No 469
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=73.87 E-value=3.4 Score=42.67 Aligned_cols=31 Identities=26% Similarity=0.411 Sum_probs=27.7
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVll 207 (527)
++|+|+ |--||||++.-++..|...|++|.+
T Consensus 113 ~~IaVT---GTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 113 QLIGIT---GSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEEEE---CSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 799999 5677999999999999999998855
No 470
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=73.78 E-value=1.4 Score=45.75 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=31.7
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCC-cEEEEEeCCCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVYG 214 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~-rVllID~D~~~ 214 (527)
+.++++. |.-|+||||+.-.|+-.+...+. +++.+|.|+..
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 4578888 88999999999999887765444 65778887643
No 471
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.52 E-value=1.9 Score=38.96 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=20.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA 199 (527)
++++++ |..|+||||+.-.|+..+.
T Consensus 5 ~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 467777 8899999999998887663
No 472
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=73.37 E-value=1.2 Score=45.66 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=23.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++| +..|-.|+||||++..|+..+ | ...||.|.
T Consensus 258 ~~lI-il~G~pGSGKSTla~~L~~~~---~--~~~i~~D~ 291 (416)
T 3zvl_A 258 PEVV-VAVGFPGAGKSTFIQEHLVSA---G--YVHVNRDT 291 (416)
T ss_dssp CCEE-EEESCTTSSHHHHHHHHTGGG---T--CEECCGGG
T ss_pred CEEE-EEECCCCCCHHHHHHHHHHhc---C--cEEEccch
Confidence 3444 455999999999999887644 3 35566664
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=72.91 E-value=1.6 Score=39.73 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=24.2
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|++. +--|+||||++..||..| |+. ++|-|.
T Consensus 7 ~iI~i~-g~~GsGk~ti~~~la~~l---g~~--~~D~~~ 39 (201)
T 3fdi_A 7 IIIAIG-REFGSGGHLVAKKLAEHY---NIP--LYSKEL 39 (201)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHT---TCC--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHh---CcC--EECHHH
Confidence 356655 889999999999888866 555 457553
No 474
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=72.73 E-value=2.1 Score=39.45 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 568899988888776 56778899999999998764
No 475
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=72.70 E-value=2.5 Score=39.21 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 478999988898887 57788899999999998764
No 476
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=72.50 E-value=2.1 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.6
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG 200 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~ 200 (527)
+.++ |-.|+|||+++-.+|..+..
T Consensus 204 ~LL~-G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 204 PVLI-GEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEE-SCTTTTTHHHHHHHHHHHHS
T ss_pred eEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 4444 99999999999999999875
No 477
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=72.38 E-value=2.9 Score=40.56 Aligned_cols=32 Identities=22% Similarity=0.112 Sum_probs=23.8
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEE
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID 209 (527)
+.|.++ |..|+||||+|..+|..+ +...+.++
T Consensus 50 ~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~ 81 (301)
T 3cf0_A 50 KGVLFY-GPPGCGKTLLAKAIANEC---QANFISIK 81 (301)
T ss_dssp SEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred ceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEE
Confidence 456666 889999999999998765 44555554
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=72.11 E-value=3.1 Score=41.46 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=26.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
+.|.++ |-.|+|||++|..+|..+ |...+.+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 346666 889999999999999877 6677777664
No 479
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=71.95 E-value=12 Score=29.22 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=52.6
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHhh-cCCCeeeEEEE
Q 009721 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDM-FEQRANEVVL-AIPWVNKVNVT 151 (527)
Q Consensus 74 ~~~~~~v~~~L~~V~dPel~~div~lglI~~v~i~~~~~~v~v~l~lt~~~cp~~~~-l~~~i~~~L~-~l~gv~~v~V~ 151 (527)
....+.|.++|.+ .-|-|..|= |=|.-+.+++ +.|.|.|.-...+||.+.. +...|+..|. .+|+++.+...
T Consensus 6 ~~~~~~I~~~L~~-IRP~L~~dG---Gdvelv~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 6 PTMFDQVAEVIER-LRPFLLRDG---GDCTLVDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp SCHHHHHHHHHHH-HHHHHHHHS---CEEEEEECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHHHHH-hcHHHHhcC---CeEEEEEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 3457789999988 678664332 3344455654 8999999999999998875 6778888886 57888877543
No 480
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=71.86 E-value=2.8 Score=39.81 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|++.|+++-||.|+ .+|..|+++|.+|.++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4578999999999887 67788999999999998653
No 481
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=71.84 E-value=3.6 Score=42.79 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=41.0
Q ss_pred CCCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCCcchH-------HHHHHHHHHHHcCCCCEEEEEEecccc
Q 009721 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (527)
Q Consensus 279 ~~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 346 (527)
+.+.+.|+|||+...........+..+|.+++|+......+ ......+..+...+++.+-+++|+++.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 56789999998743322222223456899999988765432 234455566667788766788899775
No 482
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=71.82 E-value=3.1 Score=40.54 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+.+++|..|+||||++..+|..+ |.+++-+++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 45566889999999999998766 667777774
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=71.69 E-value=4.9 Score=39.24 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=24.6
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
+-|.++ |..|+|||++|..+|..+ +..+..+++
T Consensus 52 ~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 456666 889999999999998765 456666554
No 484
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.65 E-value=3.1 Score=46.43 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.2
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHH-CCCcEEEEE
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~-~G~rVllID 209 (527)
++++.|-.|+||||+.+.+...|.+ .+.+|+++-
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 4555688999999999999988876 688998874
No 485
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=71.17 E-value=4.1 Score=41.71 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=29.0
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D 211 (527)
..+|+|+ |..|+||||+...|+..+...+.+|..++-+
T Consensus 167 ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 167 HGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 4567766 8999999999999888876555577776643
No 486
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=71.10 E-value=3 Score=38.97 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=28.8
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
||++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEAAGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 468899988888887 46778889999999998664
No 487
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=70.95 E-value=4.2 Score=41.78 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=29.3
Q ss_pred ceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEE
Q 009721 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (527)
Q Consensus 173 ~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllI 208 (527)
.++|+|+ |=-||||++.-|+..|...|++|.+.
T Consensus 104 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAIT---GSNGKSTVTTLVGEMAKAAGVNVGVG 136 (439)
T ss_dssp SCEEEEE---CSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4699999 66789999999999999999998864
No 488
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=70.79 E-value=5.2 Score=40.11 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=30.6
Q ss_pred cCcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEe
Q 009721 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (527)
Q Consensus 170 ~~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~ 210 (527)
..||||+.+. . ||-|=-+-...||..|.++|++|.++-.
T Consensus 18 ~~m~rIl~~~-~-~~~GHv~p~l~La~~L~~~Gh~V~v~~~ 56 (415)
T 3rsc_A 18 RHMAHLLIVN-V-ASHGLILPTLTVVTELVRRGHRVSYVTA 56 (415)
T ss_dssp -CCCEEEEEC-C-SCHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred ccCCEEEEEe-C-CCccccccHHHHHHHHHHCCCEEEEEeC
Confidence 4566655444 3 7889889999999999999999999873
No 489
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=70.53 E-value=6.8 Score=34.78 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=46.3
Q ss_pred CCCEEEEeCCCCCChhhhhhhhhcCCCeEEEEeCCC-cchHHHHHHHHHHHHcCC--CCEEEEEEecccccCCCcccccc
Q 009721 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPF 356 (527)
Q Consensus 280 ~yD~IIID~pp~~~~~~~~~~~~~a~d~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvV~N~~~~~~~~~~~~~~ 356 (527)
.+.+.|+|+|+.-.........+..+|.+++|...+ ..++..+...+..+.... ...+-+|.|+++...... .
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----v 156 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV----V 156 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----C
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc----C
Confidence 367899999874322222222244578888887654 346667777777776652 223567889977533211 1
Q ss_pred CCchHHHHHHHhCC
Q 009721 357 GRGSGSQVVQQFGI 370 (527)
Q Consensus 357 ~~~~~~~~~~~~g~ 370 (527)
.....+.+.+.++.
T Consensus 157 ~~~~~~~~~~~~~~ 170 (199)
T 3l0i_B 157 DYTTAKEFADSLGI 170 (199)
T ss_dssp CSCC-CHHHHTTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 12334555665554
No 490
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=70.33 E-value=3.1 Score=38.66 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=25.5
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
++|+|. +--|+||||++..||..| |.+ ++|.|.
T Consensus 15 ~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 15 LIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 466665 889999999999998877 444 578775
No 491
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=70.33 E-value=1.2 Score=37.49 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=22.6
Q ss_pred CeeEEEEcCCCCcccCChHHHHhchhc
Q 009721 492 NYAVSITWPDGFSQIAPYDQLQTMERL 518 (527)
Q Consensus 492 ~~al~i~w~Dgh~s~y~~~~L~~~~~~ 518 (527)
+..|.|.|+ |+.+.|++.|||.-+.-
T Consensus 14 ~~~L~v~w~-G~~~~~~~~wLRd~Cpc 39 (124)
T 2l6p_A 14 SKTLTLRYG-EDSYDLPAEFLRVHSPS 39 (124)
T ss_dssp TCEEEEEET-TEEEEEEHHHHHHTCCC
T ss_pred CCEEEEEEC-CEEEEeCHHHHHhcCCC
Confidence 457999999 99999999999998644
No 492
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}
Probab=70.27 E-value=3 Score=38.72 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=29.2
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 ~~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 36 (250)
T 2cfc_A 1 MSRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA 36 (250)
T ss_dssp CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 3578999988888776 56778899999999998653
No 493
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}
Probab=70.19 E-value=3.8 Score=39.08 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=29.9
Q ss_pred CcceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 171 ~~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
.|.|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 19 ~~~k~vlVTGas~gIG~-----aia~~La~~G~~V~~~~r~~ 55 (272)
T 2nwq_A 19 HMSSTLFITGATSGFGE-----ACARRFAEAGWSLVLTGRRE 55 (272)
T ss_dssp --CCEEEESSTTTSSHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CcCcEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 34478999999999998 46778899999999998653
No 494
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=69.99 E-value=3.2 Score=40.49 Aligned_cols=33 Identities=15% Similarity=0.043 Sum_probs=25.1
Q ss_pred eEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+++.|+ |..|+||||++..++..+ | ++.+|+..
T Consensus 32 ~~v~i~-G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLL-GIRRVGKSSLLRAFLNER---P--GILIDCRE 64 (350)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHS---S--EEEEEHHH
T ss_pred CeEEEE-CCCcCCHHHHHHHHHHHc---C--cEEEEeec
Confidence 355554 999999999999887653 3 88888764
No 495
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=69.86 E-value=3 Score=39.16 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=29.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|+|++.|+++-||.|+ .+|..|+++|++|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~r~~ 36 (256)
T 1geg_A 1 MKKVALVTGAGQGIGK-----AIALRLVKDGFAVAIADYND 36 (256)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 4578999988888886 57788999999999998653
No 496
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.70 E-value=2.3 Score=41.93 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=26.7
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
+.|+ |..|+||||++..+|..+...+.++.++..+.
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 5555 88999999999999999875544444555443
No 497
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=69.61 E-value=2.5 Score=37.18 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=16.3
Q ss_pred eEEEEeeCcCCChhHHHHHH
Q 009721 174 NIVAVSSCKGGVGKSTVAVN 193 (527)
Q Consensus 174 kvIav~s~KGGvGKTT~a~n 193 (527)
.++++. |..|+||||++-.
T Consensus 10 ei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEE-CCTTSCHHHHHHH
T ss_pred EEEEEE-CCCCCCHHHHHHH
Confidence 577777 9999999999885
No 498
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=69.52 E-value=1.9 Score=41.98 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=29.4
Q ss_pred EEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCC
Q 009721 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (527)
Q Consensus 176 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 212 (527)
|.++ |..|+|||++|..++....+.+...+.+++..
T Consensus 28 vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 28 VLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp EEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred EEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 4555 89999999999999987777777888888753
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=69.43 E-value=1.2 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=21.3
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHH
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~L 198 (527)
.++.|+|. |--|+||||++..||..|
T Consensus 23 ~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 34677776 889999999999888776
No 500
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=69.32 E-value=2.8 Score=38.64 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=29.4
Q ss_pred cceEEEEeeCcCCChhHHHHHHHHHHHHHCCCcEEEEEeCCC
Q 009721 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (527)
Q Consensus 172 ~~kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVllID~D~~ 213 (527)
|+|++.|+++-||.|+ .+|..|+++|++|.++|-+..
T Consensus 1 ~~k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~ 37 (242)
T 1uay_A 1 MERSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE 37 (242)
T ss_dssp -CCEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence 3578999988888885 567788888999999987653
Done!