Query 009724
Match_columns 527
No_of_seqs 170 out of 1167
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 16:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 2E-145 5E-150 1146.4 28.6 521 1-526 240-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 1E-133 3E-138 1105.2 35.7 486 1-496 194-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 7E-89 1.5E-93 761.7 36.3 454 18-492 189-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 1.4E-89 3E-94 765.3 27.6 454 1-489 162-623 (624)
5 TIGR00733 putative oligopeptid 100.0 6.9E-45 1.5E-49 398.6 32.5 375 56-488 185-588 (591)
6 COG1297 Predicted membrane pro 100.0 4E-31 8.6E-36 278.6 21.6 382 56-493 201-617 (624)
7 COG0628 yhhT Predicted permeas 78.0 19 0.00042 37.6 10.9 161 164-337 164-330 (355)
8 PF03169 OPT: OPT oligopeptide 75.3 46 0.001 37.8 13.7 101 234-336 3-120 (624)
9 TIGR02872 spore_ytvI sporulati 68.0 52 0.0011 33.7 11.2 40 298-337 286-329 (341)
10 PF01594 UPF0118: Domain of un 64.8 84 0.0018 32.0 11.9 54 285-338 259-317 (327)
11 TIGR00728 OPT_sfam oligopeptid 53.5 98 0.0021 35.4 10.9 22 136-157 278-299 (654)
12 TIGR00733 putative oligopeptid 51.5 4.1E+02 0.0089 30.2 15.3 229 233-486 2-265 (591)
13 PRK12287 tqsA pheromone autoin 50.5 1.8E+02 0.0039 30.3 11.5 48 290-337 266-318 (344)
14 PRK10983 putative inner membra 50.1 3.4E+02 0.0073 28.7 14.9 44 294-337 287-334 (368)
15 PF03606 DcuC: C4-dicarboxylat 42.8 1.6E+02 0.0035 32.3 10.0 19 204-222 251-269 (465)
16 PF09512 ThiW: Thiamine-precur 30.0 2.3E+02 0.005 26.2 7.2 26 316-341 90-116 (150)
17 PF01864 DUF46: Putative integ 28.7 1.1E+02 0.0023 29.1 5.1 33 377-410 39-71 (175)
18 KOG2927 Membrane component of 25.4 33 0.00072 35.8 1.1 30 201-230 183-213 (372)
19 COG5438 Predicted multitransme 22.7 5.7E+02 0.012 27.3 9.4 91 317-427 255-345 (385)
20 PF10669 Phage_Gp23: Protein g 22.5 2.7E+02 0.0058 23.7 5.7 30 152-181 11-40 (121)
21 PF14023 DUF4239: Protein of u 22.2 2.3E+02 0.005 27.1 6.3 24 194-217 125-148 (209)
22 TIGR03141 cytochro_ccmD heme e 20.2 3.3E+02 0.0072 19.5 5.2 28 154-182 10-37 (45)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-145 Score=1146.37 Aligned_cols=521 Identities=61% Similarity=1.193 Sum_probs=510.4
Q ss_pred ChhHHHHHHHHHHHHhhhhchhhhhcccchhhhhcCCCcceeeecccccccccccccccccccccccCCcccccHHHHHH
Q 009724 1 MQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILN 80 (527)
Q Consensus 1 ~~fF~~~f~~~f~~~~~P~y~~p~L~~~~~~~wi~p~n~~~~~i~G~~~Glgl~~~tfDWs~i~~~~g~pl~~P~~~~~n 80 (527)
+|||.++|+++|+|+|+|+|+||+|+++||+||+.|+|.+++|||||.+|||++|+||||++|++|+||||.+|+++.+|
T Consensus 240 ~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n 319 (761)
T KOG2262|consen 240 YRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIAN 319 (761)
T ss_pred hhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcCCCCCCCcccccccCCceeeceeecCCCCCCChhhHhhcCCccchHHHHHHHHHHH
Q 009724 81 VGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGF 160 (527)
Q Consensus 81 ~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~l~~~~y~~ysp~y~s~~~~l~~g~~f 160 (527)
+++|.++..+|+.|++||+ |.|+++++|+.|+++||++|++||+++|+|+|.++|.+|||||||+|+|+.|+++||++|
T Consensus 320 ~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~Ss~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~f 398 (761)
T KOG2262|consen 320 VFLGFVLFIYIVLPILYWT-NTYDAKYFPIFSSSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGF 398 (761)
T ss_pred HhhhhhhhhhhhhhhHhhc-cceecceeceecCcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHH
Confidence 9999999999999999995 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhhhccchhhhhhhhhcCCCCchHHHHHHHHHHHHHhheeeeecccccchHHHHHH
Q 009724 161 ARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLF 240 (527)
Q Consensus 161 a~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~lm~~y~~vP~ww~~~~~v~s~~~~i~~~~~~~~~~~lp~~~~il 240 (527)
|+++|+++|++|+|+||||++.|++. ++++|+|.|+||+|||||+|||.+++++++++++++|+.++++.|+|||++++
T Consensus 399 aa~~a~i~Hv~Lf~gkdiw~~~~~~~-~k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~v 477 (761)
T KOG2262|consen 399 AALSATIVHVALFNGKDIWQQTKKAF-NKKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLV 477 (761)
T ss_pred HHHHHHhhhheeeccHHHHHHHHhcc-ccCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHH
Confidence 99999999999999999999999885 56789999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHhhheeEEEeeCCCcchhHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhhhccchhhhcCCChhhHHH
Q 009724 241 AFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYT 320 (527)
Q Consensus 241 al~l~~vf~~~~g~~~g~tg~~p~l~~i~qli~g~~~pG~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~ 320 (527)
|+++++++.+|.|.++|+||++||+|+++|+|.||++||+|+|||.||.||+.+++||++++||+|+|||||+|||.||.
T Consensus 478 a~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~ 557 (761)
T KOG2262|consen 478 ACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFA 557 (761)
T ss_pred HHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHHHHHH
Q 009724 321 AQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGA 400 (527)
Q Consensus 321 ~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~liG~ 400 (527)
+|++||+++++|+.+|.+|++++++|+|+++ |++.||||..++++++||+||++||+|||+.++.|+.+.|+|++|+
T Consensus 558 ~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~---~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa 634 (761)
T KOG2262|consen 558 VQLVGTIVAGFVNLGVAWWLMYSIPNICTTD---QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGA 634 (761)
T ss_pred HHHHHHHhheeeeHHhHHHHHhcccccccCC---CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCccCcccchHHHHHhhccCCCCCCcchhhHHHHHHHHHHHHHhcCccccchhheeeehhhhhhhH
Q 009724 401 VLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTA 480 (527)
Q Consensus 401 ~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaagL~aG~a 480 (527)
+.|+++|+++|++|+++|.+++|.|+++.|.+++||++..||+.++++|+++++++|||+++||+||||+||||||||++
T Consensus 635 ~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a 714 (761)
T KOG2262|consen 635 LAPVLVWLLQKKFPKKKWIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVA 714 (761)
T ss_pred HhhHHHHHHHHhcchhhhhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchh
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcccccCCCC-CCCCCCCCCCCcccccCCCCC
Q 009724 481 FMGVLLFFALQNNDINLKWWGTHVD-HCPLATCPTAPGIAVEGCPVF 526 (527)
Q Consensus 481 i~gli~~~~~~~~~~~~~wwGn~~~-~~~~~~~~~~~~~~~~~~~~~ 526 (527)
++++++||++|++|...+||||+++ +|+..+|..+++...+++|.|
T Consensus 715 ~~~vliffcv~~~~~~~~WWGn~~~~~c~~a~cp~~~~v~~~~~~~f 761 (761)
T KOG2262|consen 715 FMGVLIFFCVQYPGISLNWWGNTVSAGCDLAGCPTAKGVVVSGCPVF 761 (761)
T ss_pred HHHhHhhheeccCCCccccccCcCCCCCCccCCCcCCeeecCCCCCC
Confidence 9999999999999999999999985 899999999998888887764
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=1.2e-133 Score=1105.25 Aligned_cols=486 Identities=37% Similarity=0.788 Sum_probs=474.3
Q ss_pred ChhHHHHHHHHHHHHhhhhchhhhhcccchhhhhcCCCcceeeeccccccccccc-ccccccccccccCCcccccHHHHH
Q 009724 1 MQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGA-FTLDWAGISAYHGSPLVTPWTSIL 79 (527)
Q Consensus 1 ~~fF~~~f~~~f~~~~~P~y~~p~L~~~~~~~wi~p~n~~~~~i~G~~~Glgl~~-~tfDWs~i~~~~g~pl~~P~~~~~ 79 (527)
+|||+++|+++|+|+|+|+|+||+||.|||+|||+|+|+++||+||+.+|||++| +|||||+|+++.|+||++|+++++
T Consensus 194 ~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~ 273 (681)
T TIGR00727 194 YKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYL 273 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999 899999998788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCcccccccCCceeeceeecCCCCCCChhhHhhcCCccchHHHHHHHHHH
Q 009724 80 NVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSG 159 (527)
Q Consensus 80 n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~l~~~~y~~ysp~y~s~~~~l~~g~~ 159 (527)
|+++|.++++++++|++|| +|.|+++|+|++|+++|||+|++||+|||+|+|++||+||||||||+|++++|+++||+.
T Consensus 274 n~~~G~~l~~~ii~P~lyy-~N~w~~~~lPi~s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~ 352 (681)
T TIGR00727 274 TIYLGCILAFWIVIPAVYY-SNTWYCQYLPISSNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLS 352 (681)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccccccccCCccchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHH
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhhhccchhhhhhhhhcCCCCchHHHHHHHHHHHHHhheeeeecccccchHHHHH
Q 009724 160 FARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGML 239 (527)
Q Consensus 160 fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~lm~~y~~vP~ww~~~~~v~s~~~~i~~~~~~~~~~~lp~~~~i 239 (527)
||+++++++|++|+|+|||++++|+ ++++|+|.|+||+|||||+|||++++++++++++++++.+++ ++|||+++
T Consensus 353 fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t--~lP~W~~~ 427 (681)
T TIGR00727 353 FASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPT--ETPVWGLF 427 (681)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--CCCHHHHH
Confidence 9999999999999999999999984 567899999999999999999999999999999999999865 59999999
Q ss_pred HHHHHHHHHHhhheeEEEeeCCCcchhHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhhhccchhhhcCCChhhHH
Q 009724 240 FAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMY 319 (527)
Q Consensus 240 lal~l~~vf~~~~g~~~g~tg~~p~l~~i~qli~g~~~pG~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f 319 (527)
+|+++++++.+|.+.++|+||+++++|+++|+|+|++.||||+|||+||++++++.+||.+++||||+|||||+|||+||
T Consensus 428 lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F 507 (681)
T TIGR00727 428 VCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALF 507 (681)
T ss_pred HHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHHHHH
Q 009724 320 TAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVG 399 (527)
Q Consensus 320 ~~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~liG 399 (527)
.+|++||++|++++++|++|++++++|+|+++ |+++||||..++++++||+||++||+|+|++|++|+.++|+|++|
T Consensus 508 ~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliG 584 (681)
T TIGR00727 508 RGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIG 584 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCccCcccchHHHHHhhccCCCCCCcchhhHHHHHHHHHHHHHhcCccccchhheeeehhhhhhh
Q 009724 400 AVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGT 479 (527)
Q Consensus 400 ~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvlaagL~aG~ 479 (527)
+++|+++|+++|++|| ++.|++|.|+++.+.+++||+++.|+..+.++|+++|+|+||||++||+||||++|||||+|+
T Consensus 585 a~~pi~~~~~~r~~P~-~~~~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~ 663 (681)
T TIGR00727 585 ACIGIFFWLVWKKWPK-FYPRYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGL 663 (681)
T ss_pred HHHHHHHHHHHHhcch-hhhhhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999995 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 009724 480 AFMGVLLFFALQNNDIN 496 (527)
Q Consensus 480 ai~gli~~~~~~~~~~~ 496 (527)
+++++++||++++++++
T Consensus 664 a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 664 VLSAIIIFFCLQLKDTA 680 (681)
T ss_pred HHHHhHheeEEEeCCCC
Confidence 99999999999998754
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=7e-89 Score=761.74 Aligned_cols=454 Identities=41% Similarity=0.766 Sum_probs=420.5
Q ss_pred hhchhhhhcccchhhhhcCCCcceeeecccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHh
Q 009724 18 PGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCY 97 (527)
Q Consensus 18 P~y~~p~L~~~~~~~wi~p~n~~~~~i~G~~~Glgl~~~tfDWs~i~~~~g~pl~~P~~~~~n~~~G~vl~~~ii~P~ly 97 (527)
|.++|+.++.++|+||+.|+++.++ +|| |+|+++++|||+++.+++|+|+++|+++++|+++|.+++|++++|++|
T Consensus 189 ~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---glg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~ 264 (654)
T TIGR00728 189 LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GLGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILY 264 (654)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988885 555 899999999999986688999999999999999999999999999999
Q ss_pred hccCCCcCCCCCCCcccccccCCceeec-eeecCCC-CCCChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009724 98 WKFDTFDARKFPIFSNQLFTSSGHKYDT-TKILTPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHG 175 (527)
Q Consensus 98 ~~~n~w~~~~~P~~s~~~fd~~g~~yn~-s~il~~~-~~l~~~~y~~ysp~y~s~~~~l~~g~~fa~~~a~i~~~~l~~~ 175 (527)
|+ |.|+++++|++|++.+|++|.+||. +++++++ .++|+++|++|||+|+++++ |++.|+.++++++|.+++|+
T Consensus 265 ~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 340 (654)
T TIGR00728 265 YK-NTWPADADPIDSSSTIDSTGVRYNSVGLIVVDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHG 340 (654)
T ss_pred hc-CccccccCCCcchhhhcCCCceeeeeeEEEeCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 95 9999999999999999999999999 9999887 68999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhhhccchhhhhhhhhc--------CCCCchHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHHHHHH
Q 009724 176 SAILEQSRSAMKNMKLDVHARLMKSY--------KQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWI 247 (527)
Q Consensus 176 ~~i~~~~~~~~~~~~~D~h~~lm~~y--------~~vP~ww~~~~~v~s~~~~i~~~~~~~~~~~lp~~~~ilal~l~~v 247 (527)
|++++++|+..+ +++|.|.|+||+| ||+|+|||+.++++++++++++++.++.+.++|||+++++++++++
T Consensus 341 ~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i 419 (654)
T TIGR00728 341 RDIISARRDHYK-LGRDDHVRLLSRDEDLKVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFV 419 (654)
T ss_pred HHHHHHHHHhhh-ccCCCChHHHhhcccccccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHH
Confidence 999999887643 3445666655555 9999999999999999999988888864457999999999999999
Q ss_pred HHhhheeEEEeeCCCcchhHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhhhccchhhhcCCChhhHHHHHhhhhh
Q 009724 248 VTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTI 327 (527)
Q Consensus 248 f~~~~g~~~g~tg~~p~l~~i~qli~g~~~pG~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~Q~iGti 327 (527)
|++|.++++|+||...++++++|+++|+++||+|++||+++++++++++||.|++||||+|||+|+|||+||.+|++|++
T Consensus 420 ~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~ 499 (654)
T TIGR00728 420 LAIPIGILAGITNPVSGLNIITELIIGYILPGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTI 499 (654)
T ss_pred HHHhhhheEEeecccchhhHHHHHhheeecCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 99999999999977779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHHHHHHHHHHHHH
Q 009724 328 VSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVW 407 (527)
Q Consensus 328 vg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~liG~~~~i~~~ 407 (527)
+|++++++|++|+.+++++ ++++|+||.+++++++|++||++||+ +|+.+++|+.+.|++++| +++++.+
T Consensus 500 vg~~v~~~v~~~~~~~~~~--------~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~ 569 (654)
T TIGR00728 500 VGSLVNAPVLEWLYHAIGN--------QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVW 569 (654)
T ss_pred HHHHHHHHHHHHHHhccCC--------CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHH
Confidence 9999999999988877653 55789999999999999999999999 999889999999999999 8999999
Q ss_pred HHHhhcCCCccCcccchHHHHHhhccCCCCCCcchhhHHHHHHHHHHHHHhcCcccc--chhheeeehhhhhhhHHHHHH
Q 009724 408 VLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWW--QKYNYVLSAALDAGTAFMGVL 485 (527)
Q Consensus 408 l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~--~kynyvlaagL~aG~ai~gli 485 (527)
+.||++|| +.|++|+|+++.+...+||.++.++.++.++|.++++++|||+++|| +||||++||||||||+|++++
T Consensus 570 ~~~~~~p~--~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gvi 647 (654)
T TIGR00728 570 LVRKLFPK--WIKYINPPVAVGGGGYIPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVI 647 (654)
T ss_pred HHHHHccc--hhhhcCHHHhhhhhhccCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Confidence 99999995 67899999988777788888888888899999999999999988877 999999999999999999999
Q ss_pred HHHHHHh
Q 009724 486 LFFALQN 492 (527)
Q Consensus 486 ~~~~~~~ 492 (527)
+||++++
T Consensus 648 iff~~~~ 654 (654)
T TIGR00728 648 IFFCLGL 654 (654)
T ss_pred HHHhccC
Confidence 9999874
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.4e-89 Score=765.31 Aligned_cols=454 Identities=39% Similarity=0.755 Sum_probs=424.6
Q ss_pred ChhHHHHHHHHHHHHhhhhchhhhhcccchhhhhcCCCcceeeecccccccccccccccccccccccCCcccccHHHHHH
Q 009724 1 MQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILN 80 (527)
Q Consensus 1 ~~fF~~~f~~~f~~~~~P~y~~p~L~~~~~~~wi~p~n~~~~~i~G~~~Glgl~~~tfDWs~i~~~~g~pl~~P~~~~~n 80 (527)
+|+|.++|.++|+|+|+|+|+||+|+.++|+||++|+|+..+++||+.+ ++||||++ ++|+|+++|+++++|
T Consensus 162 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~~g~g~i~p~~~~ls 233 (624)
T PF03169_consen 162 AKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--LIGSGLIVPLWAQLS 233 (624)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--hcCCCeeccHHHHHH
Confidence 5899999999999999999999999999999999999999999998765 99999996 479999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcCCCCCCCcccccccCCceeeceeecCCCCCCChhhHhhcCCccchHHHHHHHHHHH
Q 009724 81 VGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGF 160 (527)
Q Consensus 81 ~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~l~~~~y~~ysp~y~s~~~~l~~g~~f 160 (527)
+++|.+++|+++.|++||++|.|+++++|++|+++||++|+ +|+++|.++|++|++++.++.+.+.|+..|
T Consensus 234 ~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 234 MFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred HHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 99999999999999999955999999999999999999998 778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhh------hhccchhhhhhhhhcCCCCchHHHHHHHHHHHHHhheeeeecccccch
Q 009724 161 ARFTSTLTHVALFHGSAILEQSRSAM------KNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQ 234 (527)
Q Consensus 161 a~~~a~i~~~~l~~~~~i~~~~~~~~------~~~~~D~h~~lm~~y~~vP~ww~~~~~v~s~~~~i~~~~~~~~~~~lp 234 (527)
+.++++++|.+++|+|++++++|+.. +++++|+|+++||+|||+|+|||+.++++++++++++++.++.+.++|
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p 384 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMP 384 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence 99999999999999999998876531 345689999999999999999999999999999999998887556799
Q ss_pred HHHHHHHHHHHHHHHhhheeEEEeeCCCc--chhHHHHhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhhhccchhhhcC
Q 009724 235 WWGMLFAFALAWIVTLPIGVIQATTNQQP--GYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMK 312 (527)
Q Consensus 235 ~~~~ilal~l~~vf~~~~g~~~g~tg~~p--~l~~i~qli~g~~~pG~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~ 312 (527)
+|++++++++++++++|.++++|+||+|| ++++++|+++|++.||++++||+++++++++++||.|++||||+|||+|
T Consensus 385 ~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~ 464 (624)
T PF03169_consen 385 WWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLG 464 (624)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHH
Q 009724 313 IPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNL 392 (527)
Q Consensus 313 ~pPR~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l 392 (527)
+|||+||.+|++|+++|+++++++++++ +.++.|.++ ++++++||.+|++++++++||++||+| +.+|..+
T Consensus 465 ~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~ 535 (624)
T PF03169_consen 465 IPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSAL 535 (624)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHH
Confidence 9999999999999999999999999866 677888766 666899999999999999999999877 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccCcccchHHHHHhhccCCCCCCcchhhHHHHHHHHHHHHHhcCccccchhheeee
Q 009724 393 VWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLS 472 (527)
Q Consensus 393 ~~~~liG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kynyvla 472 (527)
++++++|++++++.++++|++|+ ++++.|...+++.++.++++++++|.++++++|||+++||+||||++|
T Consensus 536 ~~~~~~G~~~~i~~~l~~~~~P~---------~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~la 606 (624)
T PF03169_consen 536 PWGFLIGAVLPILFWLLQRKFPS---------PLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLA 606 (624)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCh---------hheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHH
Confidence 99999999999999999999984 244455666777777889999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHH
Q 009724 473 AALDAGTAFMGVLLFFA 489 (527)
Q Consensus 473 agL~aG~ai~gli~~~~ 489 (527)
|||||||+|++++++++
T Consensus 607 agl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 607 AGLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999775
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=6.9e-45 Score=398.56 Aligned_cols=375 Identities=15% Similarity=0.205 Sum_probs=272.4
Q ss_pred ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCcccccccCCceeeceeecCCCCCC
Q 009724 56 FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDL 135 (527)
Q Consensus 56 ~tfDWs~i~~~~g~pl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~l 135 (527)
+++|||+ +++|.|+++|+++.+++++|.+++|+++.|.+..+ .|..++.|. .+
T Consensus 185 ~~~~~Sp--alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~--~~~~~~~~~----------------------~~- 237 (591)
T TIGR00733 185 FGSDLSL--ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK--MGSPGDLSA----------------------LD- 237 (591)
T ss_pred EEecccH--HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccH----------------------HH-
Confidence 6789999 69999999999999999999999999999999873 343211111 00
Q ss_pred ChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccc-hhhhhhhhhcCCCCchHHHHHHH
Q 009724 136 NIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKL-DVHARLMKSYKQVPQWWFYVLLL 214 (527)
Q Consensus 136 ~~~~y~~ysp~y~s~~~~l~~g~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~~-D~h~~lm~~y~~vP~ww~~~~~v 214 (527)
....+..+++||++++-+ +++.+ +.+++..|.+++++|+..+..++ +.+.+..|+++|+|.|+...+++
T Consensus 238 ~~~~vw~~~vR~iGvg~m---------~~~gl-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dip~~~v~~~~~ 307 (591)
T TIGR00733 238 LAWTIWSTKVRYIGVGAI---------VVAAL-WTLLKLRGPIARGIKAGLEAARRRQAGEAVLRTEEDLPINIVLTLVA 307 (591)
T ss_pred HHHHHHhcccchhhHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHH
Confidence 112344556788765433 23333 33467788888877765432111 11123467789999996544433
Q ss_pred HHHHHHhheeeeeccc----ccchH-HHHHHHHHHHHHHHhhheeEEEe--eCCCc--chhHHHHhhhhhhc--------
Q 009724 215 GSIGLSLLMSFVWKDE----VQLQW-WGMLFAFALAWIVTLPIGVIQAT--TNQQP--GYDIIAQFMIGYVL-------- 277 (527)
Q Consensus 215 ~s~~~~i~~~~~~~~~----~~lp~-~~~ilal~l~~vf~~~~g~~~g~--tg~~p--~l~~i~qli~g~~~-------- 277 (527)
+.+ +.+. ...++.+ .++.+ .+.+++++++|+++..++|+.|+ ||.|| ++++++|++++.+.
T Consensus 308 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~ 385 (591)
T TIGR00733 308 LFV-IPLA-DFLLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGT 385 (591)
T ss_pred HHH-HHHH-HHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccC
Confidence 322 2210 0011100 01223 57799999999999999999999 66799 89999999999998
Q ss_pred ----CCchhHHHHHHHHHHHHHHHHHhhhhccchhhhcCCChhhHHHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCC
Q 009724 278 ----PGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESL 353 (527)
Q Consensus 278 ----pG~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~ 353 (527)
|+...+|++.+++.+.+++||.|++||||+||++|++||+||++|++|+++|+++++++++ ++++.+++..+.-.
T Consensus 386 ~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~-ll~~ayg~~~~~~~ 464 (591)
T TIGR00733 386 GSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLN-LLIKAYGIAGTPTA 464 (591)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccccC
Confidence 3456789999999999999999999999999999999999999999999999999999997 55556566432111
Q ss_pred CCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHH-HHHHHHHHHHHHHHhhcCCCccCcccchHHHHHhhc
Q 009724 354 HPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLF-LVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFA 432 (527)
Q Consensus 354 ~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~-liG~~~~i~~~l~~r~~P~~~~~~~i~~pv~~~g~~ 432 (527)
++++.+.+|++..+ ++++.|++++ . ++|.+ .+|+++.+++.++++..++++ ++++.|.+.+|++
T Consensus 465 ~~~~~l~APqA~l~--~ava~gi~~~------~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig 529 (591)
T TIGR00733 465 KGENALPAPQAFLM--AAVTEGVFTG------T-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVG 529 (591)
T ss_pred CCccccCCCHHHHH--HHHHhhhcCC------C-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHH
Confidence 24456888876665 5777777642 1 46654 477888877777776665322 4555688889999
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHHHhcCccc------cchhheeeehhhhhhhHHHHHHHHH
Q 009724 433 GMPPATPTNIASWLITGMIFNYFVFRYHKRW------WQKYNYVLSAALDAGTAFMGVLLFF 488 (527)
Q Consensus 433 ~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w------~~kynyvlaagL~aG~ai~gli~~~ 488 (527)
++.|.+ ++..+++|.+..++|+||+++. -++|.+++||||++||+|+|++++.
T Consensus 530 ~yLP~~---~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~ 588 (591)
T TIGR00733 530 IYLPLS---LGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAA 588 (591)
T ss_pred hhcchh---HHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHH
Confidence 988864 7899999999999999876531 1468999999999999999999854
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=99.97 E-value=4e-31 Score=278.61 Aligned_cols=382 Identities=16% Similarity=0.138 Sum_probs=269.3
Q ss_pred ccccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCcccccccCCceeeceeecCCCCCC
Q 009724 56 FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDL 135 (527)
Q Consensus 56 ~tfDWs~i~~~~g~pl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~~~~P~~s~~~fd~~g~~yn~s~il~~~~~l 135 (527)
+..|.|+ +++|.+.++++.+..-+++|.+++|.+.+|++-++ .|...+... .+
T Consensus 201 lg~~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~--~~~p~~~~~----------------------~~- 253 (624)
T COG1297 201 LGLGLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLI--VPGPSDQEA----------------------GV- 253 (624)
T ss_pred hcccccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhc--ccCCCchhH----------------------HH-
Confidence 3455666 58899999999999999999999999999988764 332110000 11
Q ss_pred ChhhHhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcc-chhhhhhhhhcCCCCchHHHHHHH
Q 009724 136 NIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMK-LDVHARLMKSYKQVPQWWFYVLLL 214 (527)
Q Consensus 136 ~~~~y~~ysp~y~s~~~~l~~g~~fa~~~a~i~~~~l~~~~~i~~~~~~~~~~~~-~D~h~~lm~~y~~vP~ww~~~~~v 214 (527)
+..++.+-.-+|++++ -..+.+ .++++...|.+.|..++..+.-+ +.......|+++|+|..|-...++
T Consensus 254 ~a~~vW~s~VrfIGaG--------~i~i~~--~wtl~~l~~pi~~gi~~~f~~~r~~~~~~~~~rte~Dl~~~~~~~~~~ 323 (624)
T COG1297 254 QAWKVWSSKVRFIGAG--------AIAIAA--IWTLISLLGPILRGIKATFESARGRRRAGAVSRTERDLPPKLVLLVLL 323 (624)
T ss_pred HHHHHhhheeEEeehh--------HHHHHH--HHHHHHHHhHHHHHHHHHHHHhhcccccccccchhhcCChhhHHHHHH
Confidence 1223333333788774 333444 45556777777777666532211 111112237899999988666665
Q ss_pred HHHHHHhheeeeec-------ccccchHHHHHHHHHHHHHHHhhheeEEEeeCC--Cc--chhHHHHhhhhhhc------
Q 009724 215 GSIGLSLLMSFVWK-------DEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQ--QP--GYDIIAQFMIGYVL------ 277 (527)
Q Consensus 215 ~s~~~~i~~~~~~~-------~~~~lp~~~~ilal~l~~vf~~~~g~~~g~tg~--~p--~l~~i~qli~g~~~------ 277 (527)
...+..++...+.- .+..+-.-+.+++++++|+++..+|++.|..|. +| ++.++++++.+.++
T Consensus 324 ~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~ 403 (624)
T COG1297 324 ATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQS 403 (624)
T ss_pred HHHHHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccc
Confidence 55443333333322 111234667888999999999999999999887 45 78888887774443
Q ss_pred ------CC----chhHHHHHHHHHHHHHHHHHhhhhccchhhhcCCChhhHHHHHhhhhhhhHHHHHHHHHHHHhhcccc
Q 009724 278 ------PG----KPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENI 347 (527)
Q Consensus 278 ------pG----~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~i 347 (527)
|. ....+++.+++.+.++.+++|++||||+||++|++||+||.+|++|+++++++..+|++ ++++.+++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~-ll~~aYgf 482 (624)
T COG1297 404 GGLFIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLE-LLNKAYGF 482 (624)
T ss_pred cccccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHH-HHHHHhCc
Confidence 21 12567778999999999999999999999999999999999999999999999999998 66777887
Q ss_pred CCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCCccCcccchHHH
Q 009724 348 CDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVI 427 (527)
Q Consensus 348 ~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~liG~~~~i~~~l~~r~~P~~~~~~~i~~pv~ 427 (527)
..+. +.+....|.+|+..++++..|+ |....+|..+..+..+|+.+..+.+.++|+. .+...|++
T Consensus 483 ~ga~---~r~~~~l~apqa~lma~ia~Gv------f~~~lew~mi~~g~~~gi~lI~id~~l~~~~------~~~~lpvl 547 (624)
T COG1297 483 AGAP---PRQGMDLAAPQATLMATIAKGV------FTGNLEWSMILAGAGIGIVLIGIDERLKGRG------GKLRLPVL 547 (624)
T ss_pred CCCC---CCCCCCCcchHHHHHHHHhccc------CCCCcchHHHHHHHhHhheeeeccHHHhcCC------ccccccce
Confidence 5332 1112226667888889988666 4555667777666667777766666665422 23457888
Q ss_pred HHhhccCCCCCCcchhhHHHHHHHHHHHHHhcC-------ccccchhheeeehhhhhhhHHHHHHHHHHHHhC
Q 009724 428 SYGFAGMPPATPTNIASWLITGMIFNYFVFRYH-------KRWWQKYNYVLSAALDAGTAFMGVLLFFALQNN 493 (527)
Q Consensus 428 ~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~-------~~w~~kynyvlaagL~aG~ai~gli~~~~~~~~ 493 (527)
++|++.+.|.+ .+..+++|.+..+.+.|+. .+.-++..+++||||+.||+|+++++......+
T Consensus 548 AvGvGIylP~s---~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~ 617 (624)
T COG1297 548 AVGVGIYLPPS---LTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGS 617 (624)
T ss_pred eeeeeeecChh---hchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheec
Confidence 89999877643 6788999999998887762 234556899999999999999999996655544
No 7
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=77.99 E-value=19 Score=37.62 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhccchhhhhh-hhhcCCCCchHHHHHHHHHHHHHhheeeeecccccchHHHHHHHH
Q 009724 164 TSTLTHVALFHGSAILEQSRSAMKNMKLDVHARL-MKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAF 242 (527)
Q Consensus 164 ~a~i~~~~l~~~~~i~~~~~~~~~~~~~D~h~~l-m~~y~~vP~ww~~~~~v~s~~~~i~~~~~~~~~~~lp~~~~ilal 242 (527)
.-.++..++.+++++++.+++...++.++..++. .+.++++-.+..+-.+ .+++.++.+...+. -.++|. +.++++
T Consensus 164 ~~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq~i-~al~~gi~~~igl~-ilgvp~-alllgi 240 (355)
T COG0628 164 VLVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQVL-VALIVGILTGIGLL-ILGVPY-ALLLGL 240 (355)
T ss_pred HHHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHcccH-HHHHHH
Confidence 3344555677788888888765433222222222 2335555555443333 33334332221111 122332 333443
Q ss_pred HHHHHHHhhheeEEEeeCCCcchhHHHHhhhhhhcCCchhHHHHHHHHHHHHHH-HHHhhhhccchhhhcCCChhhHHHH
Q 009724 243 ALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPIANLLFKIYGRISTI-HALSFLSDLKLGHYMKIPPRCMYTA 321 (527)
Q Consensus 243 ~l~~vf~~~~g~~~g~tg~~p~l~~i~qli~g~~~pG~~~anl~~~~~~~~~~~-qa~~~~~DlK~G~y~~~pPR~~f~~ 321 (527)
+.++.=.+|.. .+.+..+--.+.++...| +. ....-.+++...+ --.++++..=+|+-+|++|=..+.+
T Consensus 241 l~g~~~lIP~i--------G~~i~~ip~~i~al~~~~-~~-~~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~ilis 310 (355)
T COG0628 241 LAGLLSLIPYI--------GPVIGLIPAVIIALLQGG-PW-GALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVILLS 310 (355)
T ss_pred HHHHHHhhccc--------ccHHHHHHHHHHHHHhcc-hH-HHHHHHHHHHHHHHHhcceeccccccccCCCCHHHHHHH
Confidence 33333222210 112444445555555555 32 2333334444444 3456778888999999999999999
Q ss_pred Hhhhh----hhhHHHHHHHH
Q 009724 322 QLVGT----IVSGVVNLGVA 337 (527)
Q Consensus 322 Q~iGt----ivg~~v~~~v~ 337 (527)
.+.|. ++|.++.+.++
T Consensus 311 ll~g~~l~G~~G~ila~pl~ 330 (355)
T COG0628 311 LLGGGSLFGFVGLILAPPLA 330 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99877 45556666554
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=75.26 E-value=46 Score=37.78 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHHhhheeEEEeeCCCcchhHHHHhhh----hhh---------cCC--chhHHHHHHHHHHHHHH--
Q 009724 234 QWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMI----GYV---------LPG--KPIANLLFKIYGRISTI-- 296 (527)
Q Consensus 234 p~~~~ilal~l~~vf~~~~g~~~g~tg~~p~l~~i~qli~----g~~---------~pG--~~~anl~~~~~~~~~~~-- 296 (527)
.+-++++.++++.+++....+..-.+|..+..+++.|++. -.+ .|| ++.-|.+....+..+.+
T Consensus 3 T~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~~~ 82 (624)
T PF03169_consen 3 TFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGGMA 82 (624)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 3444555555555555555555555555444444444332 111 133 34444444444433333
Q ss_pred HHHhhhhccchhhhcCCChhhHHHHHhhhhhhhHHHHHHH
Q 009724 297 HALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGV 336 (527)
Q Consensus 297 qa~~~~~DlK~G~y~~~pPR~~f~~Q~iGtivg~~v~~~v 336 (527)
.+.+++.-+..=.++ ..+.-+.-|++-++.+.++.++.
T Consensus 83 ~a~~~i~~ipa~~~~--~~~~~~~~~~l~~~~~~~lG~~~ 120 (624)
T PF03169_consen 83 YAAGFIAAIPALLFL--GQPFSFGYLILWTLSTQLLGYGF 120 (624)
T ss_pred hhhhHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhh
Confidence 555555443333333 22224555555555555544443
No 9
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=68.00 E-value=52 Score=33.71 Aligned_cols=40 Identities=8% Similarity=0.092 Sum_probs=31.2
Q ss_pred HHhhhhccchhhhcCCChhhHHHHHhhhhh----hhHHHHHHHH
Q 009724 298 ALSFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVA 337 (527)
Q Consensus 298 a~~~~~DlK~G~y~~~pPR~~f~~Q~iGti----vg~~v~~~v~ 337 (527)
-.+.++-.=.|.-+++||=..+.+.+.|.- +|.++.+.++
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~ 329 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIV 329 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788999999999999999998874 4555655554
No 10
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=64.85 E-value=84 Score=32.04 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHH-hhhhccchhhhcCCChhhHHHHHhhhhh----hhHHHHHHHHH
Q 009724 285 LLFKIYGRISTIHAL-SFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVAW 338 (527)
Q Consensus 285 l~~~~~~~~~~~qa~-~~~~DlK~G~y~~~pPR~~f~~Q~iGti----vg~~v~~~v~~ 338 (527)
.....+.....+|-. +.++-.=.|+-+|+||-..+.+.++|.. +|.++.+.++.
T Consensus 259 ~~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~ 317 (327)
T PF01594_consen 259 ALIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILA 317 (327)
T ss_pred HHHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333444455555544 5556666799999999999999999874 46666666553
No 11
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=53.51 E-value=98 Score=35.43 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=16.6
Q ss_pred ChhhHhhcCCccchHHHHHHHH
Q 009724 136 NIPAYNSYGKLYLSPLFALSIG 157 (527)
Q Consensus 136 ~~~~y~~ysp~y~s~~~~l~~g 157 (527)
+++.|++++.+|.+++.++..+
T Consensus 278 s~~~~~~~~~~y~~~~~il~~~ 299 (654)
T TIGR00728 278 SSSTIDSTGVRYNSVGLIVVDG 299 (654)
T ss_pred chhhhcCCCceeeeeeEEEeCC
Confidence 4567889999999876666654
No 12
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=51.47 E-value=4.1e+02 Score=30.15 Aligned_cols=229 Identities=10% Similarity=0.039 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHHHHHHhhheeEEEeeCCCcchhHHHHhhh----hhhcCCchhHHHHHHHHHHHHHHHHHhhhhcc---
Q 009724 233 LQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMI----GYVLPGKPIANLLFKIYGRISTIHALSFLSDL--- 305 (527)
Q Consensus 233 lp~~~~ilal~l~~vf~~~~g~~~g~tg~~p~l~~i~qli~----g~~~pG~~~anl~~~~~~~~~~~qa~~~~~Dl--- 305 (527)
+.+-++++.++++.+++....|+-=.+|..++.++.+-+++ -.+.+.++.-|.+.++.+..+.+.+. +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55677888888888888888888777888776555554443 33334566666666655544443332 11111
Q ss_pred -chhhhcCCChhhHHHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccC
Q 009724 306 -KLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFG 384 (527)
Q Consensus 306 -K~G~y~~~pPR~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~ 384 (527)
.+|+.-+.|...+...=+.|.++|.+.....-+.++. | ++| +-|...+- +-++. .|.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~---~---~~L-------~fP~G~A~--Ae~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVV---E---SKL-------PYPEGVAC--AEVLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c---CCC-------CCCCHHHH--HHHHH--cccccc--
Confidence 2333223466777777778899999888886653321 1 222 22222211 11221 121100
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhcCCC----------ccCcccchHHHHHhhccCCCCCCcchhhHHHHHHHHHH
Q 009724 385 PGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEK----------KWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNY 454 (527)
Q Consensus 385 ~g~~y~~l~~~~liG~~~~i~~~l~~r~~P~~----------~~~~~i~~pv~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 454 (527)
.+..-..+..+++++.+..+.. . -|.+|.. .+.-.++......|.|++-+. +....+++|.++.+
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFLG-S-LRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-H-hccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHHH
Confidence 0122234444555555544331 1 1233310 011112333445788886543 35667788887764
Q ss_pred H-----HHhc-C-cc----------ccchhheeeehhhhhhhHHHHHHH
Q 009724 455 F-----VFRY-H-KR----------WWQKYNYVLSAALDAGTAFMGVLL 486 (527)
Q Consensus 455 ~-----~rr~-~-~~----------w~~kynyvlaagL~aG~ai~gli~ 486 (527)
. ++++ . +. -|.+|---++.|.+.++++..++.
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 3 2221 1 10 122211116899999999998875
No 13
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=50.52 E-value=1.8e+02 Score=30.34 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=36.7
Q ss_pred HHHHHHHHH-HhhhhccchhhhcCCChhhHHHHHhhhh----hhhHHHHHHHH
Q 009724 290 YGRISTIHA-LSFLSDLKLGHYMKIPPRCMYTAQLVGT----IVSGVVNLGVA 337 (527)
Q Consensus 290 ~~~~~~~qa-~~~~~DlK~G~y~~~pPR~~f~~Q~iGt----ivg~~v~~~v~ 337 (527)
+.+...+|. .+.++-.=.|+-++++|=..+.+.++|. ++|.+++.++.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 445555555 6788888899999999999999999987 45556666655
No 14
>PRK10983 putative inner membrane protein; Provisional
Probab=50.08 E-value=3.4e+02 Score=28.75 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=32.8
Q ss_pred HHHHHHhhhhccchhhhcCCChhhHHHHHhhhhh----hhHHHHHHHH
Q 009724 294 STIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVA 337 (527)
Q Consensus 294 ~~~qa~~~~~DlK~G~y~~~pPR~~f~~Q~iGti----vg~~v~~~v~ 337 (527)
..++..+.++-.=.|.-+++||=..+.+.+.|.. +|.++.+.++
T Consensus 287 vv~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 287 VVGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888899999999999999988875 3445555544
No 15
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=42.78 E-value=1.6e+02 Score=32.26 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=14.3
Q ss_pred CCchHHHHHHHHHHHHHhh
Q 009724 204 VPQWWFYVLLLGSIGLSLL 222 (527)
Q Consensus 204 vP~ww~~~~~v~s~~~~i~ 222 (527)
-++++|+...++.+++-+.
T Consensus 251 ~~~~~~~~~~~l~~~~li~ 269 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIY 269 (465)
T ss_pred cccceeehHHHHHHHHHHh
Confidence 4678888888888876544
No 16
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=29.98 E-value=2.3e+02 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.2
Q ss_pred hhHHHHHhhhh-hhhHHHHHHHHHHHH
Q 009724 316 RCMYTAQLVGT-IVSGVVNLGVAWWML 341 (527)
Q Consensus 316 R~~f~~Q~iGt-ivg~~v~~~v~~~ll 341 (527)
..-..+|++|| ++|+++++.++.+++
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~ 116 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFM 116 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45678999998 789999999998776
No 17
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=28.69 E-value=1.1e+02 Score=29.06 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=25.9
Q ss_pred ecCccccCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 009724 377 IGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLS 410 (527)
Q Consensus 377 ~gp~~~f~~g~~y~~l~~~~liG~~~~i~~~l~~ 410 (527)
-| ||+||.|+.+.-..-+.+.|++.+++..++.
T Consensus 39 DG-rRilGdgKTwrG~i~gvl~g~l~g~i~~~l~ 71 (175)
T PF01864_consen 39 DG-RRILGDGKTWRGFIGGVLAGTLVGIIQGLLL 71 (175)
T ss_pred CC-CEecCCCCeEEeeeHHHHHHHHHHHHHHHHh
Confidence 35 9999999998877777778888877776664
No 18
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.42 E-value=33 Score=35.82 Aligned_cols=30 Identities=20% Similarity=0.528 Sum_probs=21.6
Q ss_pred cCCCC-chHHHHHHHHHHHHHhheeeeeccc
Q 009724 201 YKQVP-QWWFYVLLLGSIGLSLLMSFVWKDE 230 (527)
Q Consensus 201 y~~vP-~ww~~~~~v~s~~~~i~~~~~~~~~ 230 (527)
|...| +|+.++++++..++++.++..|+..
T Consensus 183 yep~~~~~~vl~~~fvl~tlaivLFPLWP~~ 213 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAIVLFPLWPRR 213 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHhcccCcHH
Confidence 33444 6777777777778888888899854
No 19
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=22.66 E-value=5.7e+02 Score=27.28 Aligned_cols=91 Identities=18% Similarity=0.396 Sum_probs=45.7
Q ss_pred hHHHHHhhhhhhhHHHHHHHHHHHHhhccccCCccCCCCCCccccchhhHHhhhhhheeeecCccccCCCCchhHHHHHH
Q 009724 317 CMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLF 396 (527)
Q Consensus 317 ~~f~~Q~iGtivg~~v~~~v~~~ll~~~~~i~~~~l~~~~~~~tcp~~~~~~~asv~wG~~gp~~~f~~g~~y~~l~~~~ 396 (527)
..+.++++=..+||++-.++= +-+++.+.-+. ++.. ...-++.+.+- +| +++.|. -......-
T Consensus 255 ~~~~~~viIg~LGAimDvais--IaSsi~El~e~-----n~~~---t~~~lfksgmn---IG-~DimGT---m~NTL~la 317 (385)
T COG5438 255 GLFLAGVIIGSLGAIMDVAIS--IASSINELHEQ-----NPNI---TVKELFKSGMN---IG-QDIMGT---MTNTLLLA 317 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--HHHhHHHHHhc-----CCCc---cHHHHHHHHhh---hh-HHHHHH---HHHHHHHH
Confidence 377777777777887777664 33444443211 1111 11122222221 34 444431 11222233
Q ss_pred HHHHHHHHHHHHHHhhcCCCccCcccchHHH
Q 009724 397 LVGAVLPVPVWVLSKVFPEKKWIPLINIPVI 427 (527)
Q Consensus 397 liG~~~~i~~~l~~r~~P~~~~~~~i~~pv~ 427 (527)
.+|..+|+..|+.+-.+| +.+-+|.-++
T Consensus 318 y~g~al~l~i~~~~~~~~---l~~iin~~~~ 345 (385)
T COG5438 318 YLGGALPLLILFLRNNYS---LYYIINSKVL 345 (385)
T ss_pred HHHhhHHHHHHHHHcCCc---HHHHHhHHHH
Confidence 378888999998876555 4455664443
No 20
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=22.50 E-value=2.7e+02 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 009724 152 FALSIGSGFARFTSTLTHVALFHGSAILEQ 181 (527)
Q Consensus 152 ~~l~~g~~fa~~~a~i~~~~l~~~~~i~~~ 181 (527)
|++.-.+.||.+.-++..++|--.+.||..
T Consensus 11 yal~K~~~FA~L~i~~FiILLIi~~~IW~~ 40 (121)
T PF10669_consen 11 YALTKIMFFAFLFIVVFIILLIITKSIWHD 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555667776666556666666777653
No 21
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=22.23 E-value=2.3e+02 Score=27.06 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=14.4
Q ss_pred hhhhhhhcCCCCchHHHHHHHHHH
Q 009724 194 HARLMKSYKQVPQWWFYVLLLGSI 217 (527)
Q Consensus 194 h~~lm~~y~~vP~ww~~~~~v~s~ 217 (527)
+.|+......+|...|.++++.+.
T Consensus 125 ~~Rl~~~~~~lp~~~w~vl~~~~~ 148 (209)
T PF14023_consen 125 RTRLSQAQSSLPPPLWIVLLILAA 148 (209)
T ss_pred HHHHHHhhcCCChhHHHHHHHHHH
Confidence 345566678888765555444443
No 22
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.16 E-value=3.3e+02 Score=19.55 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 009724 154 LSIGSGFARFTSTLTHVALFHGSAILEQS 182 (527)
Q Consensus 154 l~~g~~fa~~~a~i~~~~l~~~~~i~~~~ 182 (527)
.+||++++.+...+.+... .+|...+.+
T Consensus 10 ~sYg~t~l~l~~li~~~~~-~~r~~~~~l 37 (45)
T TIGR03141 10 LAYGITALVLAGLILWSLL-DRRRLLREL 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4688888888887777644 344444444
Done!