Query 009724
Match_columns 527
No_of_seqs 170 out of 1167
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 22.3 5.3E+02 0.018 25.7 10.7 19 313-331 171-189 (340)
2 3llq_A Aquaporin Z 2; aquapori 15.7 6.7E+02 0.023 23.7 9.5 20 313-332 155-174 (256)
3 4g1u_A Hemin transport system 10.9 1.1E+03 0.039 23.3 13.3 32 380-412 292-323 (357)
4 2l2t_A Receptor tyrosine-prote 10.8 1.5E+02 0.0051 20.5 2.2 16 447-462 25-40 (44)
5 2ks1_B Epidermal growth factor 10.2 1.6E+02 0.0055 20.3 2.2 16 447-462 26-41 (44)
6 2jwa_A Receptor tyrosine-prote 10.1 1.6E+02 0.0054 20.4 2.2 19 444-462 23-41 (44)
7 2l8s_A Integrin alpha-1; trans 9.9 4.8E+02 0.016 18.8 4.7 37 68-105 2-38 (54)
8 2k1a_A Integrin alpha-IIB; sin 8.6 2.3E+02 0.0078 19.4 2.5 17 201-217 5-21 (42)
9 3h3g_B Parathyroid hormone-rel 8.1 1.5E+02 0.0053 17.8 1.2 17 302-327 4-20 (24)
10 2v2f_A Penicillin binding prot 7.5 1.5E+02 0.005 17.6 1.0 12 111-122 5-16 (26)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=22.33 E-value=5.3e+02 Score=25.69 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=13.1
Q ss_pred CChhhHHHHHhhhhhhhHH
Q 009724 313 IPPRCMYTAQLVGTIVSGV 331 (527)
Q Consensus 313 ~pPR~~f~~Q~iGtivg~~ 331 (527)
.++-..|..|+++|++=.+
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~ 189 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVF 189 (340)
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3555678888888876443
No 2
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=15.67 E-value=6.7e+02 Score=23.73 Aligned_cols=20 Identities=10% Similarity=-0.047 Sum_probs=14.4
Q ss_pred CChhhHHHHHhhhhhhhHHH
Q 009724 313 IPPRCMYTAQLVGTIVSGVV 332 (527)
Q Consensus 313 ~pPR~~f~~Q~iGtivg~~v 332 (527)
.++...|..|+++|++=.++
T Consensus 155 ~s~~~~f~~E~i~Tf~Lv~~ 174 (256)
T 3llq_A 155 YSLVSALLIEIILTAFFLIV 174 (256)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999875443
No 3
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=10.88 E-value=1.1e+03 Score=23.28 Aligned_cols=32 Identities=25% Similarity=0.125 Sum_probs=21.3
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 009724 380 RRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKV 412 (527)
Q Consensus 380 ~~~f~~g~~y~~l~~~~liG~~~~i~~~l~~r~ 412 (527)
+++++++ .-..++.+.++|+++-+.--.+.|.
T Consensus 292 R~l~g~~-~~~llp~Sal~Ga~lll~aD~lar~ 323 (357)
T 4g1u_A 292 RMRIGAD-HRWLLPGAALGGACLLLTADTLART 323 (357)
T ss_dssp HTTSCSC-HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCC-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455542 2346778999999888877777654
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.79 E-value=1.5e+02 Score=20.54 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCcc
Q 009724 447 ITGMIFNYFVFRYHKR 462 (527)
Q Consensus 447 ~vG~~~~~~~rr~~~~ 462 (527)
+++....+|+|||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4455667788887654
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.18 E-value=1.6e+02 Score=20.33 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCcc
Q 009724 447 ITGMIFNYFVFRYHKR 462 (527)
Q Consensus 447 ~vG~~~~~~~rr~~~~ 462 (527)
+++....+|+|||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4445566788887654
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.12 E-value=1.6e+02 Score=20.43 Aligned_cols=19 Identities=16% Similarity=0.474 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHhcCcc
Q 009724 444 SWLITGMIFNYFVFRYHKR 462 (527)
Q Consensus 444 ~~~~vG~~~~~~~rr~~~~ 462 (527)
..+++++.+..|+|||+-+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 4566777778889888754
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=9.85 E-value=4.8e+02 Score=18.81 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Q 009724 68 GSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDA 105 (527)
Q Consensus 68 g~pl~~P~~~~~n~~~G~vl~~~ii~P~ly~~~n~w~~ 105 (527)
|.|--+|+|..+-..+|.++-..+++-++|- -+.+.-
T Consensus 2 ~~~~~vp~WiIi~svl~GLLLL~Lii~~LwK-~GFFKR 38 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLLLMLLILALWK-IGFFKR 38 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHHHHHHHHHHHH-HHHTTS
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHH-cCcccC
Confidence 5566789888665555555544444435554 465543
No 8
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.59 E-value=2.3e+02 Score=19.37 Aligned_cols=17 Identities=35% Similarity=1.013 Sum_probs=10.0
Q ss_pred cCCCCchHHHHHHHHHH
Q 009724 201 YKQVPQWWFYVLLLGSI 217 (527)
Q Consensus 201 y~~vP~ww~~~~~v~s~ 217 (527)
+.++|.|.+....+..+
T Consensus 5 ~~~vp~wiIi~s~l~GL 21 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGL 21 (42)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHH
Confidence 35678776655554443
No 9
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.07 E-value=1.5e+02 Score=17.76 Aligned_cols=17 Identities=29% Similarity=0.671 Sum_probs=12.8
Q ss_pred hhccchhhhcCCChhhHHHHHhhhhh
Q 009724 302 LSDLKLGHYMKIPPRCMYTAQLVGTI 327 (527)
Q Consensus 302 ~~DlK~G~y~~~pPR~~f~~Q~iGti 327 (527)
+||+| |.+|.-++++.+
T Consensus 4 ~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp HHHHH---------HHHHHHHHHHHH
T ss_pred HHHHH---------HHHHHHHHHHHh
Confidence 68888 888887777643
No 10
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=7.46 E-value=1.5e+02 Score=17.56 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=9.3
Q ss_pred CcccccccCCce
Q 009724 111 FSNQLFTSSGHK 122 (527)
Q Consensus 111 ~s~~~fd~~g~~ 122 (527)
.++.+||++|+.
T Consensus 5 ~ss~IYD~~g~~ 16 (26)
T 2v2f_A 5 TSSKIYDNKNQL 16 (26)
T ss_pred CCCEEEeCCCCE
Confidence 467889998875
Done!