BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009725
(527 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|302143859|emb|CBI22720.3| unnamed protein product [Vitis vinifera]
Length = 524
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/528 (64%), Positives = 428/528 (81%), Gaps = 5/528 (0%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q GF + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS++ EG V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQSEGEPVVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 180
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
PARK+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GE
Sbjct: 181 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGE 236
Query: 241 KRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
KRK D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+
Sbjct: 237 KRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 296
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSY 359
AT S EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SY
Sbjct: 297 ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESY 356
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
S+D + IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD K
Sbjct: 357 SVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAK 416
Query: 420 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
ILY+LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL+
Sbjct: 417 ILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELE 476
Query: 480 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+E+E++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 477 QEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524
>gi|359490507|ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
vinifera]
Length = 511
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/528 (63%), Positives = 421/528 (79%), Gaps = 18/528 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG LT +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTLTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQ-----EAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 116 LQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 173
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
PARK+G+KSAK + EP+TIEQ+ + AA PM+A RFSV+ N +DV + +P
Sbjct: 174 TPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDD--------SPN- 224
Query: 241 KRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
RK D LELD E G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+
Sbjct: 225 -RKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLE 283
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSY 359
AT S EKKVKT+NSVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SY
Sbjct: 284 ATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESY 343
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
S+D + IIE+AQN+EVES+ KRYGRDAYRIFRLLSKS RLLETDKISDTTFVEKKD K
Sbjct: 344 SVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKKDTAK 403
Query: 420 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
ILY+LWKD YL MEKL + G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL+
Sbjct: 404 ILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELE 463
Query: 480 REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+E+E++ LP +KR G L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 464 QEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511
>gi|224134849|ref|XP_002321920.1| predicted protein [Populus trichocarpa]
gi|222868916|gb|EEF06047.1| predicted protein [Populus trichocarpa]
Length = 519
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 303/530 (57%), Positives = 398/530 (75%), Gaps = 15/530 (2%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++YG K+AVH+ITNHFG LVAKVC+CLL+KGPL + + RYTELS+ V+N LLVLIQ
Sbjct: 1 VSQYGIKYAVHIITNHFGPLVAKVCDCLLKKGPLPLREIVRYTELSETLVRNCLLVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
NC+Q F E+ GF + K ++ Y+VLFDN+LHRVRF+KF+ I+SQEFD+ CV+L++ LL
Sbjct: 61 NCLQPFLLEEEGGFGEVNKVSSLYMVLFDNVLHRVRFSKFMAIVSQEFDKLCVDLIETLL 120
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLL-MPISEEE 180
+HGRL+ +Q+FD + G +++L+E + KLV A YVERCP SEP L +P EE
Sbjct: 121 QHGRLSSEQIFDGFRDRSSSGG---MEALQENMHKLVMARYVERCPISEPFLALPSEEEA 177
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVG-EKEKNSNNVTPG 239
P R++G+KSAK EPET+EQ+V+ AA+P E MRFS N E +K +N+++ G
Sbjct: 178 APVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGADRDKVENNSSSNIG 237
Query: 240 EKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
+KRK D LE D + GVAD+Q ++R NFE FIRRLRHK CI+ VR LDD AA V +AML
Sbjct: 238 DKRKLDALESDIDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTRLDDEAATVFTAML 297
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELSFVDASSD 357
A+ S EKK+KT +SVPLS +SIY EVIKSE GRNMTLD+V + LV L FV +
Sbjct: 298 DASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVGLSSSPPFVRVVDN 357
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
SYSIDF+ IE+AQ + ES+V K+YG+DAYR+FRLLSK+GRLLETDKISD+ F+EKK+
Sbjct: 358 SYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETDKISDSIFLEKKET 415
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
IL K+W+ YL MEKL+ A +QFLLWKVN L + VLD+MFHAALNLSLRV+YE
Sbjct: 416 ANILSKMWQGDYLQMEKLI---AGPTQFLLWKVNMINLRERVLDDMFHAALNLSLRVAYE 472
Query: 478 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
L+++KE+L+L D GP++++Y +++KVR LLESS+MKLDDAI++FHDF
Sbjct: 473 LEQQKEILHLGVD---GPMKEKYEKLKKVRFLLESSRMKLDDAIMIFHDF 519
>gi|255539431|ref|XP_002510780.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
gi|223549895|gb|EEF51382.1| DNA-directed RNA polymerase III 62 kDa polypeptide, putative
[Ricinus communis]
Length = 485
Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust.
Identities = 296/484 (61%), Positives = 370/484 (76%), Gaps = 28/484 (5%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
T++G K+A H+ITNHFG+LVAKVC+CLLRKGPLT Q V +TEL+ QVKN+LLVLIQ N
Sbjct: 4 TQHGIKYATHIITNHFGNLVAKVCQCLLRKGPLTVQKVVEFTELNQTQVKNSLLVLIQHN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
CVQA+ + D K T Y+ LFDNILHRVRF+KFL I+SQ+F + CV++V+GLLE
Sbjct: 64 CVQAYRS------GDDLKLTTHYIALFDNILHRVRFSKFLAIISQDFHKSCVDIVEGLLE 117
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLT+KQ+ DRA S N + LDS++E L KLV Y+E CPASEP+L P +EEE
Sbjct: 118 HGRLTVKQIVDRANSR----NSIGLDSVKENLCKLVNGRYIEHCPASEPVLAPPTEEEDR 173
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKN-SNNVTPGE 240
A+K+ +KSAK + E ET+EQ+V+ A+PM+A RFSV + E D E ++N S++ G+
Sbjct: 174 AKKRSAKSAKIVIESETLEQRVLAVAVPMDAKRFSVDLDTELKDDAENDQNKSSDKHVGD 233
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K VA++Q V++RANFE FIRRLRHK CI++VR LDDGAA VLSAML A
Sbjct: 234 K------------VAEDQVVLWRANFEEFIRRLRHKACIENVRGRLDDGAAIVLSAMLDA 281
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFVDASSDSY 359
+ + EKKVKT +SVPLSL+SIYEEVIK+E GRNMT+DH+ ++L QLG FV A D Y
Sbjct: 282 SRTEEKKVKTASSVPLSLNSIYEEVIKNENGRNMTIDHIESALGQLGSPPPFVKAVEDLY 341
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+IDF+ IIE AQ++EVES+V KRYGRDAYRIFRLLSK+ RLLETDKISDT FVEKK+ K
Sbjct: 342 TIDFKHIIEAAQSDEVESIVLKRYGRDAYRIFRLLSKASRLLETDKISDTIFVEKKETTK 401
Query: 420 ILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
ILYK+W+D YLLMEKLV A + FLLWKVN+ LWK VLDEMFHA+LNLS+RV+YEL+
Sbjct: 402 ILYKMWQDDYLLMEKLV---AGTATFLLWKVNKHTLWKQVLDEMFHASLNLSIRVAYELE 458
Query: 480 REKE 483
++KE
Sbjct: 459 QQKE 462
>gi|449446151|ref|XP_004140835.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/531 (54%), Positives = 392/531 (73%), Gaps = 18/531 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQ 118
NCVQAFT F D PK +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++
Sbjct: 62 HNCVQAFT-----DFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLE 116
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL++GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P
Sbjct: 117 GLLQNGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KV 171
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVT 237
EE P RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++
Sbjct: 172 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS 228
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+
Sbjct: 229 -GQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAI 287
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL LG D
Sbjct: 288 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGMDDYKIS 347
Query: 358 SYS-IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
++ +DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +
Sbjct: 348 MFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 407
Query: 417 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
APKILY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++
Sbjct: 408 APKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAH 467
Query: 477 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E++ KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 468 EIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|449522480|ref|XP_004168254.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Cucumis sativus]
Length = 518
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 287/531 (54%), Positives = 391/531 (73%), Gaps = 18/531 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T+YG K+AVH++T HFG+LVAKVCE LLRKGPLT + + R+TEL+ QV N+LL+LIQ
Sbjct: 2 VMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILIQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF--DQQCVELVQ 118
NCVQAFT F D K +T Y+ LF NILHR+RF+KF+ I SQ+ D+ C EL++
Sbjct: 62 HNCVQAFT-----DFGDASKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELLE 116
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL++GRL+++Q+ +RA+S + D + ++L KL+ AH+VERCPA EP L P
Sbjct: 117 GLLQNGRLSMEQLVERAESRNHPIS----DVVHDSLFKLLNAHFVERCPAPEPTLSP-KV 171
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV-TNVESDVGEKEKNSNNVT 237
EE P RK+G+K+AK PET+EQ+++EAA P+E +RFS+ TN E+ EK ++ + ++
Sbjct: 172 EEPPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA---EKSEHHSQIS 228
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRKHD LE+ + + +++RAN++ FIR LRHK CI+HVR+ DDG NVLSA+
Sbjct: 229 -GQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDDGVVNVLSAI 287
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+AT S+EK VKT+ +VPLSL +IYEEV+K+E GR+MTLD V ASL LG D
Sbjct: 288 LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGCPGIDDYKIS 347
Query: 358 SYS-IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
++ +DF IIE AQ +EVES+V KRYGRDAYR+FR LSK+G L+ET+KISD++FV+K +
Sbjct: 348 MFTTVDFSMIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNE 407
Query: 417 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
APKILY+LWKD YL MEK+ +T R S LLW+V+R LW+HVLDEM+HA+LNL LR+++
Sbjct: 408 APKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRLAH 467
Query: 477 ELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E++ KELL+LP D PL + + VR LL SS +KLDDA++LFHDF
Sbjct: 468 EIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 518
>gi|356534135|ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 510
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/530 (54%), Positives = 387/530 (73%), Gaps = 23/530 (4%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T++G K AVH+IT HFG +VAKVCE L GPLT + RYT+L+ +QV+N+LLVL+Q
Sbjct: 1 MVTQHGIKFAVHLITKHFGKIVAKVCENLFIHGPLTLDQLVRYTDLTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF + D D + TQY+VLFD+ILHR+RF KFL I+S++ D++CV+L+ GL
Sbjct: 61 HNCVQAFVSAPQDD--DRLRVRTQYLVLFDSILHRLRFPKFLEIVSRKLDEECVKLLDGL 118
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L GRLTLKQM DR E N V +RETL KL+TA +VERCPA EP+ + S +E
Sbjct: 119 LRDGRLTLKQMVDR------EKNAVPTKVVRETLCKLLTARFVERCPAPEPV-VSTSFKE 171
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
RK+G+KSAK PET+EQ+VV+AA+P + +RFS+ + V ++E NS++
Sbjct: 172 TTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSV-DRETNSDDA---- 226
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
++ ++E VA E +++RANFE FIR LRHK I++VR DDG A VLSA+L+A
Sbjct: 227 ----QMISVEE-EVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVLEA 281
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYS 360
T S +KKVKT+NSVPLSL +I EV+K++ GR MT+D +RASLVQLG S +SYS
Sbjct: 282 TRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLG-CSPSMILEESYS 340
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
ID +KIIE A+NEEVES+V KRYG D YRIFRLL+K +TD+I+ +T VEKK+A K+
Sbjct: 341 IDLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAASTLVEKKEASKL 400
Query: 421 LYKLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
LYKLWKD YL MEK+ T GA+Q+ L+WKVN+ +LW++VLDEM+HAALNLSLR+++E +
Sbjct: 401 LYKLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFEQE 460
Query: 480 REKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+++ELL +P DKR GPLQ +Y ++ V +LL SS MKLDDA++LFHDF
Sbjct: 461 KDEELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFHDF 510
>gi|297737009|emb|CBI26210.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/530 (54%), Positives = 372/530 (70%), Gaps = 16/530 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CLLRKG L ++ R +LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLLRKGTLALDDIVRTAKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF E G +GP TQY++LFDNILHR+RF K L I+S+E D++C EL +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEELFEAF 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKE-KNSNNVTP 238
PARK + SAK + E E EQ + A P +A F V+T+ D+ G+K N V
Sbjct: 181 TPARKHDANSAKAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIGNPPGVVI 240
Query: 239 GEKRKHDVLELD-ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G+KRK D L+LD E G A E+ V +RAN++ + LRHK CI++VRA LD GAA VLSAM
Sbjct: 241 GKKRKQDALKLDTESGAASEKDVPWRANYKELVCHLRHKACIENVRARLDSGAAIVLSAM 300
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+AT SAEK VK + SV LS+S+I E V++SEAG +MTL+ +RASLVQLG +
Sbjct: 301 LEATQSAEKNVKEEISVLLSISTITEAVMQSEAGCSMTLERIRASLVQLGCHPNGVGADR 360
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+Y+ID +KIIE+AQN+EVES+V KRYGR+A+RIFRLLSKS LET KISDTTF+EKK+A
Sbjct: 361 TYNIDLKKIIELAQNDEVESMVLKRYGREAHRIFRLLSKSCCPLETTKISDTTFIEKKEA 420
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
KILYKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HAALNLS+++
Sbjct: 421 AKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHAALNLSIQI--- 477
Query: 478 LDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+ L DK G L++R R+ ILL++S MKLDDA++LFHDF
Sbjct: 478 -------IELRRDKHVGALRERDVRL---AILLQASLMKLDDALMLFHDF 517
>gi|356574495|ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Glycine max]
Length = 518
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/532 (54%), Positives = 391/532 (73%), Gaps = 19/532 (3%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+TE+G K VH+IT HFG +VAKVCE L GPLT + RYT+ + +QV+N+LLVL+Q
Sbjct: 1 MVTEHGIKFGVHLITKHFGKIVAKVCEKLFSHGPLTLDQLVRYTDFTKDQVRNSLLVLVQ 60
Query: 61 QNCVQAFTT--EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
NC QAF + + D AD + TQY+VLFDNI+HR+RF KFL I+S++ D++CV+L+
Sbjct: 61 HNCAQAFVSAPQDDDDDADRLRVRTQYLVLFDNIIHRLRFPKFLDIVSRKLDEECVKLLV 120
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GLL GRLTLKQM DR S+ + N V +RETL KL+TA +VERCPA EP++ S
Sbjct: 121 GLLRDGRLTLKQMVDR--ESQGKENAVPTKVVRETLCKLLTARFVERCPAPEPVV-STSF 177
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+E +K+G+KSAK PET+EQ+VV+AA+P + +RFS+ N+ S+V ++E NS++V
Sbjct: 178 KETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNV-DRETNSDDVP- 235
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
++ ++E VA E+ +++RANFE FIR LRHK I++VR DDG A VLSA+L
Sbjct: 236 -------MISVEE-DVAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDDGTATVLSAVL 287
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 358
+AT S EKKVK NSVPLSL +I EV+K++ GR MT+D +RASLVQLG S +S
Sbjct: 288 EATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLG-CSPSMILEES 346
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y ID +KIIE A+NEEVES+V KRYGRDAYR+FRLL+K +TD+I+ +T VEKK+A
Sbjct: 347 YCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFHDTDQIAASTLVEKKEAS 406
Query: 419 KILYKLWKDGYLLMEKLVVT-GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
K+LYKLWKD YL MEK+ T GA+Q L+WKVN+ +LW++VLDEM+HAALNLSLR+++E
Sbjct: 407 KLLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVLDEMYHAALNLSLRMAFE 466
Query: 478 LDREKELLNLPADK--RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
++++ELL +P DK GPLQ +Y R+ VR+L+ SS +KLDDA++LFHDF
Sbjct: 467 QEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLDDALMLFHDF 518
>gi|297809071|ref|XP_002872419.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318256|gb|EFH48678.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/534 (49%), Positives = 377/534 (70%), Gaps = 23/534 (4%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELGSECGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L +++
Sbjct: 121 LLSNGRLTLGQLIERDRDS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKD 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK-EKNSNNVTP 238
+ PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ E D + +N+T
Sbjct: 176 QEPAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLI--FEEDFNSSLADDDSNITE 233
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
G++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML
Sbjct: 234 GKRKQRDVDSSDPSS-----RVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAML 288
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVD 353
+ EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV
Sbjct: 289 EVGRPQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVT 348
Query: 354 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
+DSY +DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR ++TDKI+D E
Sbjct: 349 EMNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVDTDKIADAALTE 408
Query: 414 KKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
KKD P+IL K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR
Sbjct: 409 KKDTPQILLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLR 467
Query: 474 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+++EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 468 LAHELESEKELLMLPSDKLEGPLKERVKKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|18408755|ref|NP_566914.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
gi|20466336|gb|AAM20485.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
gi|34098883|gb|AAQ56824.1| At3g49000 [Arabidopsis thaliana]
gi|332644960|gb|AEE78481.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis
thaliana]
Length = 523
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/534 (50%), Positives = 379/534 (70%), Gaps = 21/534 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 3 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 121 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 176 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 234
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 289
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDA 354
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV+
Sbjct: 290 VGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNE 349
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
+DSY +D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 350 VNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 409
Query: 415 KDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
KD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR
Sbjct: 410 KDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLR 469
Query: 474 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 470 LAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 523
>gi|297816108|ref|XP_002875937.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321775|gb|EFH52196.1| RNA polymerase III subunit RPC82 family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 521
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/533 (49%), Positives = 377/533 (70%), Gaps = 21/533 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +AVH+IT FG +V+KVCECLLRKGPL+ +++ R E ++ QVK+ L +LI
Sbjct: 3 MSEFGIVYAVHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNQVKDILYLLI 62
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF ++++E +C ++ G
Sbjct: 63 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRLVNEELGSECGAVLDG 120
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q+ +R + S G + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 121 LLSNGRLTLGQLIERDRGS---GKTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+K+G+K+AK + EPET+E++VVEAA P++A+RF ++ ++ + +SN +T G
Sbjct: 176 QEPAKKRGAKAAKILKEPETLEERVVEAATPVDAIRFPLIFEEDAHSSLADDDSN-ITEG 234
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++ N+E FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 235 KRKQRDVDSSDPSS-----GVIWHPNYEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 289
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDA 354
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV
Sbjct: 290 VGRSQEKKVKTDNSAPMSIGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVTE 349
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
+DSY +DF+ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 350 MNDSYIVDFKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 409
Query: 415 KDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
KD P+ L K+WKDGYL M+KL +TG FLLWKVN+ I+ + +LDEM+HA+LNL+LR+
Sbjct: 410 KDTPQFLLKMWKDGYLHMQKLAITGT-YVPFLLWKVNKLIVTRQMLDEMYHASLNLNLRL 468
Query: 475 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
++EL+ EKELL LP+DK GPL++R ++R R+LL S+ KLDDAI+LFHDF
Sbjct: 469 AHELESEKELLMLPSDKLEGPLKERVIKVRAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|21553700|gb|AAM62793.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 521
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 266/534 (49%), Positives = 379/534 (70%), Gaps = 21/534 (3%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I++++ D +C ++ G
Sbjct: 61 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEQLDSKCGAVLDG 118
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 119 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 173
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 174 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 232
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 233 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 287
Query: 300 ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS-----FVDA 354
S EKKVKT NS P+S+ SIYEEVIK+EAGR M + V A L QL S FV+
Sbjct: 288 VGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSATSSYLPAFVNE 347
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
+DSY +D++ II +AQ +E+E+VV +RYG++A+R+FR LS+ GR +ETDKI+D EK
Sbjct: 348 VNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRFVETDKIADAALTEK 407
Query: 415 KDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
KD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM+HA+LNLSLR
Sbjct: 408 KDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEMYHASLNLSLR 467
Query: 474 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+LFHDF
Sbjct: 468 LAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIMLFHDF 521
>gi|6522566|emb|CAB62010.1| RNA polymerase III subunit-like protein [Arabidopsis thaliana]
Length = 529
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 261/544 (47%), Positives = 374/544 (68%), Gaps = 33/544 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLI 59
++E+G +A+H+IT FG +V+KVCECLLRKGPL+ +++ R E ++ +VK+ L +LI
Sbjct: 1 MSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYLLI 60
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
Q NCVQAF+ E PDG KA QY+VLF+NILHRVR+ KF I+++E D +C ++ G
Sbjct: 61 QHNCVQAFSIEPPDG--SESKAIVQYIVLFNNILHRVRYNKFSRIVNEELDSKCGAVLDG 118
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL +GRLTL Q +R + S GN + +++R++L KLV A +VER P+ EP+L ++E
Sbjct: 119 LLSNGRLTLGQFIERDRDS---GNTIGSEAIRDSLQKLVAARFVERIPSPEPVLG--NKE 173
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ PA+++G+K+AK + EPET+E+QVVEAA P++A+RF ++ +S+ + NSN +T G
Sbjct: 174 KEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEEDSNSSLADDNSN-ITEG 232
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
++++ DV D V++R NFE FI RLRHK C++ V+ D+G A VL AML+
Sbjct: 233 KRKQRDVDTSDSSS-----GVIWRPNFEEFIHRLRHKACVEIVKERRDEGCAIVLRAMLE 287
Query: 300 ATSSAEKKVKTK----------NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL 349
S EKK + + P+S+ SIYEEVIK+EAGR M + V A L QL
Sbjct: 288 VGRSQEKKSTYEVLLTEFAIIFETAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQLSAT 347
Query: 350 S-----FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 404
S FV+ +DSY +D++ II +AQ +E +VV +RYG++A+R+FR LS+ GR +ETD
Sbjct: 348 SSYLPAFVNEVNDSYIVDYKSIISVAQKDE--AVVMRRYGKEAFRMFRYLSQEGRFVETD 405
Query: 405 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILWKHVLDEM 463
KI+D EKKD P+ L K+WKDGYL M+KL VT + FLLWKVN+ I+ +LDEM
Sbjct: 406 KIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQMLDEM 465
Query: 464 FHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILL 523
+HA+LNLSLR+++EL+ EKELL LP DK GPL++R +++ R+LL S+ KLDDAI+L
Sbjct: 466 YHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDDAIML 525
Query: 524 FHDF 527
FHDF
Sbjct: 526 FHDF 529
>gi|357444007|ref|XP_003592281.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481329|gb|AES62532.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 505
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 264/535 (49%), Positives = 363/535 (67%), Gaps = 38/535 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
NCVQAFT G DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++G
Sbjct: 61 HNCVQAFTEA---GDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKG 117
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ +
Sbjct: 118 LLRDGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGD 174
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVT 237
+ R +K A+ PE E +VVEAA + +RFS+ T SD
Sbjct: 175 DKKGRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD------------ 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+
Sbjct: 221 -GETKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAI 277
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+AT + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQLG ++
Sbjct: 278 LEATRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLG-------CAN 330
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+DF++II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+A
Sbjct: 331 QNIVDFKRIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEA 390
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
PK+L+KLW++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+
Sbjct: 391 PKLLFKLWRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRM 450
Query: 475 SYELDREKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
++E ++++E+LN+ R + PLQ +Y R+R V +LL+SS MKLDDA++LFHDF
Sbjct: 451 AFEEEKDEEILNISKKTRNESAPLQKKYERLRNVLLLLKSSLMKLDDALMLFHDF 505
>gi|357444005|ref|XP_003592280.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
gi|355481328|gb|AES62531.1| DNA-directed RNA polymerase III subunit RPC3 [Medicago truncatula]
Length = 468
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/490 (48%), Positives = 330/490 (67%), Gaps = 36/490 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G K AVH+IT HFG +VA V E LL GPLT + V RYTELS+E VKN+LLVLIQ
Sbjct: 1 MVSQWGIKFAVHLITAHFGKIVANVAEKLLNNGPLTLELVTRYTELSNEHVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKA-NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
NCVQAFT G DG + +Y+VLFDNI+HR+RF KF+ I+SQE D +CV +++G
Sbjct: 61 HNCVQAFTEA---GDEDGSRVVKPKYLVLFDNIVHRLRFPKFMEIVSQELDDKCVTILKG 117
Query: 120 LLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
LL GRLTLKQ+ D + E N + D++RE+L +L+ A YVERCP E ++ +
Sbjct: 118 LLRDGRLTLKQLVDMGQDKE---NAMAPDAVRESLCRLLRARYVERCPVPEAKIVEEKGD 174
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVV--TNVESDVGEKEKNSNNVT 237
+ R +K A+ PE E +VVEAA + +RFS+ T SD
Sbjct: 175 DKKGRSTSNKKARVFKVPE--EHRVVEAAKRGDMIRFSLTAYTGCSSD------------ 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D+ + VA E+S ++RANFE FIR LR K I++VRA +DDGAA VLSA+
Sbjct: 221 -GETKLADISVAE--NVAKEESFLWRANFEEFIRYLRDKALIENVRARMDDGAATVLSAI 277
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+AT + +K VK + S P +L +I EV+K+E GR MT+D V+A+LVQLG ++
Sbjct: 278 LEATRNIDKNVKIEQSAPCTLDTISSEVMKTENGRTMTMDRVKAALVQLG-------CAN 330
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+DF++II +A+NEEVES+V KRYGRDAYR+FR L K + TD+I++ T VEKK+A
Sbjct: 331 QNIVDFKRIIHLARNEEVESIVLKRYGRDAYRMFRHLLKENQFRPTDQIAEATLVEKKEA 390
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
PK+L+KLW++ YL MEKL V+ Q S L+WKVN+ +LW+HVLDEM+H ALNL LR+
Sbjct: 391 PKLLFKLWRENYLQMEKLTVSMTSQNGTSPILMWKVNQPLLWEHVLDEMYHGALNLKLRM 450
Query: 475 SYELDREKEL 484
++E ++++E+
Sbjct: 451 AFEEEKDEEV 460
>gi|147790067|emb|CAN75989.1| hypothetical protein VITISV_012194 [Vitis vinifera]
Length = 549
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/512 (44%), Positives = 304/512 (59%), Gaps = 72/512 (14%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M EYG K AVH+I+ FGD AKVC+CL+RKG L ++ R T+LS +QVK L VLIQ
Sbjct: 1 MTPEYGIKLAVHLISTDFGDHAAKVCDCLIRKGTLALDDIVRTTKLSPQQVKTYLKVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF E G +GP TQY++LFDNILHR+RF K L I+S+E D++C +L +
Sbjct: 61 HNCVQAFAMEHEGGCGEGPVVVTQYMLLFDNILHRMRFPKLLAIVSKELDKECEKLFEAF 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HG LTL+Q+ DR S++ EGN D+LR + KLV AHYVERCPA +P L+P EE+
Sbjct: 121 LKHGWLTLQQILDRVPSNQNEGNCTVQDALRGSFTKLVNAHYVERCPAPDPFLVPPDEEK 180
Query: 181 GPARKKGSKSAK-------KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
PARK + SAK + E E EQ + A P +A F V+T+ D+ +
Sbjct: 181 TPARKHDANSAKALTDSCQAVEELEIGEQCDIAKATPSKAKGFPVITDTCGDINGDKSIG 240
Query: 234 NNVTPGEKRKHDVLE-------LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 286
N PG V + + G+A E+ V +RAN+ + CI++VRA L
Sbjct: 241 N--PPGVVIXKKVAQARCFKIGIQNLGLASEKDVPWRANY-------KELACIENVRARL 291
Query: 287 DDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL 346
D GAA VLSAML+AT SAEK VK + SV LS+++I E V++SEAG +MTL+ +RASLVQL
Sbjct: 292 DSGAAIVLSAMLEATQSAEKNVKEEISVLLSINTITEAVMQSEAGCSMTLERIRASLVQL 351
Query: 347 GELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 406
G + ++Y+I
Sbjct: 352 GCHPNGVGADETYNI--------------------------------------------- 366
Query: 407 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHA 466
DTTF+EKK+A KILYKLWKD L MEK+V+ +RQSQF+LWKV + W+H+LDEM+HA
Sbjct: 367 -DTTFIEKKEAAKILYKLWKDECLHMEKIVLNESRQSQFMLWKVKKDTFWRHILDEMYHA 425
Query: 467 ALNLSLRVSYELDREKELLNLPADKRTGPLQD 498
ALNLS+R+ EL+ + LL D+ GPLQ+
Sbjct: 426 ALNLSIRI-IELNSMETLLASCKDR--GPLQN 454
>gi|168046248|ref|XP_001775586.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673004|gb|EDQ59533.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 520
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 198/532 (37%), Positives = 315/532 (59%), Gaps = 42/532 (7%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
KV +CL+ +GPL ++ R++EL+ +K++LLVL+Q +CVQA+ E + P+ +T
Sbjct: 3 KVVKCLVYRGPLALADIARFSELNPSTLKSSLLVLVQHSCVQAYKVEHEGVGSAPPRVST 62
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGN 143
YV L DNILHR+RF KFL + ++ ++ LV+GLLEHGRLTL+Q+ R ++ K G
Sbjct: 63 SYVPLCDNILHRMRFPKFLLAVREDLGEEVGSLVEGLLEHGRLTLEQITQR--TAAKAGK 120
Query: 144 LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGE----PET 199
V + ++ET KLV A ++ERCPA+EP L P P +K +AK G +T
Sbjct: 121 KV-VKGVKETFAKLVAARFIERCPAAEPSLQPKDSNVEPPKKVPRGAAKARGPILSAQDT 179
Query: 200 IE---QQVVEAALPMEAMRFSV---VTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECG 253
+ Q++++AA P E RF + + + + + + E + P ++ +D+L
Sbjct: 180 VSEVVQRILKAAAPDETDRFRLPISMAGMSAPIVDNETTDPSSLP--QKVNDIL------ 231
Query: 254 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 313
DE+ V++R NFE F+R+LRH+ C+D VR LD GAA +LSAMLQAT + E + +S
Sbjct: 232 -IDEKEVLWRVNFEQFLRKLRHQTCVDMVRTRLDAGAAIILSAMLQATGNQETSARQHHS 290
Query: 314 VPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-----GELSFVDASSDSYSIDFEKIIE 368
VPLS+ +I + V + G++MTL+ +R + QL G L+ +SY+I+ IIE
Sbjct: 291 VPLSMDAITQAVRSTPDGQHMTLERIRGLVAQLASDGVGFLAKAGEGGNSYAINMHNIIE 350
Query: 369 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 428
Q EVE +V +R+GR+ RI+RLL+ G+ LE +I + K+ ++LY+L K+
Sbjct: 351 ARQRNEVEGIVLQRFGRECCRIYRLLAIKGQ-LEQKQIGERAMA-PKNVKELLYRLLKEQ 408
Query: 429 YLLMEKLVVTGARQ---SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL- 484
Y+ +++ + + LWKVN + + VLD+++HAA NL LR ++E+ +E+E+
Sbjct: 409 YVQVQQEIAKTSEHIASKSIYLWKVNYRAVLYRVLDDLYHAATNLCLRHAHEIQKEQEVG 468
Query: 485 ---------LNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+ P + QD+ RI ++ +L++S +KLDDAILLFHDF
Sbjct: 469 LFMITINTYTHPPLSQAAPAQQDQVKRISRITKILDASLLKLDDAILLFHDF 520
>gi|414881489|tpg|DAA58620.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 507
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 202/533 (37%), Positives = 317/533 (59%), Gaps = 32/533 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G D + T Y+ +FDN+LHR+RF+KFL+++ + + L++GL
Sbjct: 61 HNCVQAYTS--PRGAGD--RTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPEVSEVLLEGL 116
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
L++GRLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++
Sbjct: 117 LQNGRLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAV 175
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E+ + +K ++ K + ++EQ+VV A +A RFS + D K+ ++
Sbjct: 176 EQPTSTRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVA 232
Query: 239 GEKRKHDVLELDEC-GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G KRKH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A
Sbjct: 233 GNKRKHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAF 292
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
+A + +V + I E V + E G +MTLDH+ + L L E + + +
Sbjct: 293 FEANVTNNDN----KTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDL-ECTSTANNPE 347
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++ D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+
Sbjct: 348 EFTFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVV 407
Query: 418 PKILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V
Sbjct: 408 HETLYKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMV 466
Query: 475 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+Y ELL L K L++R N +L + + D++++LFHDF
Sbjct: 467 NY----MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 507
>gi|414881486|tpg|DAA58617.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881487|tpg|DAA58618.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
gi|414881488|tpg|DAA58619.1| TPA: hypothetical protein ZEAMMB73_769576 [Zea mays]
Length = 506
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 203/533 (38%), Positives = 318/533 (59%), Gaps = 33/533 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ Q++ R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLQDIVRRLELSPGQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G D + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAYTS--PRGAGD--RTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGL 115
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
L++GRLT +Q+ +R K SE + L + +R KLV AHYVERCP EP P++
Sbjct: 116 LQNGRLTFEQLVERTIFKVSE-DSPLPTREEVRMNFNKLVYAHYVERCPKPEPFFDPLAV 174
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E+ + +K ++ K + ++EQ+VV A +A RFS + D K+ ++
Sbjct: 175 EQPTSTRK--RAPKTVEAVLSLEQKVVCTAALSDAERFSEIPYF-MDGSSSAKDGHHAVA 231
Query: 239 GEKRKHDVLELDEC-GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
G KRKH+ LE+DE + E V++R NFE FI L+ K C + +A + G + A
Sbjct: 232 GNKRKHETLEVDEDDSIIAESEVLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAF 291
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
+A + +V + I E V + E G +MTLDH+ + L L E + + +
Sbjct: 292 FEANVTNNDN----KTVTSPIDGILERVGQKEGGMSMTLDHITSVLNDL-ECTSTANNPE 346
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++ D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+
Sbjct: 347 EFTFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGSPVETDEITDRTILDKQVV 406
Query: 418 PKILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL V
Sbjct: 407 HETLYKLWKDEYIDSERVPSTSATGTGSAQFFVWRV-KNIYREHFMDNLYHAALNLRQMV 465
Query: 475 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+Y ELL L K L++R N +L + + D++++LFHDF
Sbjct: 466 NY----MAELL-LEGSKDEIKLRNRKN-------ILILALTRHDESLMLFHDF 506
>gi|115439167|ref|NP_001043863.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|56202140|dbj|BAD73473.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
gi|113533394|dbj|BAF05777.1| Os01g0679000 [Oryza sativa Japonica Group]
gi|215765022|dbj|BAG86719.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 205/532 (38%), Positives = 307/532 (57%), Gaps = 31/532 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPESEA-LLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E
Sbjct: 116 LQNGRLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + +I+++VV A +A RFS + + D + + G
Sbjct: 176 QSTSSRK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISG 233
Query: 240 EKRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 234 AKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEA 292
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 356
+A+ + NSV ++ I E + + E G +MTLDH+ L +L S
Sbjct: 293 FFEASLME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELN-CSPSSEDP 347
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
DS+ +D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 348 DSFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQI 407
Query: 417 APKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
LYKLWKD Y+ E+++ TG +Q+ +W+V + + +D + HAALNL V+
Sbjct: 408 VHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVN 466
Query: 476 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
Y ELL L K L++R N +L + + DD+++LF DF
Sbjct: 467 Y----IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 506
>gi|357135934|ref|XP_003569562.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Brachypodium distachyon]
Length = 505
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 201/532 (37%), Positives = 307/532 (57%), Gaps = 32/532 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LVAKVC+CLLR G L+ Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVGIISDHFGPLVAKVCDCLLRHGELSLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF+ P G + T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAFSA--PKG---RDRTVTLYLAIFDNVLHRLRFSKFLSVIRADIPESEV-LIEGL 114
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMP-ISE 178
L++GRLT Q+ R S EG++ + +R L KLV AH+VERCP EP + P + +
Sbjct: 115 LQNGRLTFDQLVGRTISKVPEGSIRPAREEIRMNLNKLVHAHFVERCPKPEPFIDPLVVQ 174
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ +R++ K+ +K+ ++EQ++V A +A RFS + + D + S +
Sbjct: 175 QPTSSRRRAPKNFEKVI---SLEQKIVNTADLSDAERFSEIPYIIEDASDVNGCSRDPVD 231
Query: 239 GEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRK E+DE E V++RANFE F L+ K C D + L G + +
Sbjct: 232 SAKRKRGAFEVDEELNSTIAENEVLWRANFEQFTFCLKKKFCADRKKLKLKVGTHPIWES 291
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 356
+A + K +SV ++ I E + + E G +MTLD V L L + + + +
Sbjct: 292 FCEANLTE----KDTDSVTSPINGILERLRQKEGGASMTLDQVTRVLEDL-QCTTSNENP 346
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
++Y+ D K++E +NEE+ES+V K+YG+ A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 347 EAYTFDLRKMVESCRNEEIESLVKKKYGQAAFTIFRLLVTQGGPVETDQIIDTTILDKQI 406
Query: 417 APKILYKLWKDGYLLMEKL-VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
LYKLWKD Y+ EK+ V G +QF +W+ + + +D ++HAALNL V+
Sbjct: 407 VHSTLYKLWKDDYVDTEKISSVAGTGYAQFYVWRA-KSTFREQFIDNLYHAALNLRQMVN 465
Query: 476 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
Y ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 466 Y----IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFHDF 505
>gi|300681505|emb|CBH32599.1| RNA polymerase III subunit RPC82 domain containing protein,
expressed [Triticum aestivum]
Length = 502
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 193/532 (36%), Positives = 299/532 (56%), Gaps = 35/532 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G A +I++HFG LVAKVC+CLLR G L + R +L QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAAGLISDHFGPLVAKVCDCLLRHGALQLTEIVRRLKLPQGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF++ + G + T Y+ +FDN+LHR+RF+KF++I+ + + L++GL
Sbjct: 61 HNCVQAFSSPR------GDRTITLYLAIFDNVLHRLRFSKFISIIRADIPES-EALIEGL 113
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ R S EG + + +R +LV A YVERCP +EP P +E
Sbjct: 114 LQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFNPQEDE 173
Query: 180 EGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ AR++ K+A+++ ++EQ+VV A + RFS + D + +N
Sbjct: 174 QSTGARRRVPKTAEEV---LSLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPHNAVA 230
Query: 239 GEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
G KRKH E+DE E V++R NFE FI L+ K C D + L G + +
Sbjct: 231 GAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWES 290
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 356
+A K NSV S++ I E++ + E G M++ ++ L+ +L +
Sbjct: 291 FFEANLPD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQCTTSDG 343
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
+ ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 344 EEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQI 403
Query: 417 APKILYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V+
Sbjct: 404 VHSTLYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFIDNLYHAALNLRQMVN 462
Query: 476 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
Y ELL L K L++R N +L + + DD+++LFHDF
Sbjct: 463 Y----IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLMLFHDF 502
>gi|242053989|ref|XP_002456140.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
gi|241928115|gb|EES01260.1| hypothetical protein SORBIDRAFT_03g031160 [Sorghum bicolor]
Length = 506
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 198/532 (37%), Positives = 313/532 (58%), Gaps = 31/532 (5%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV++I++HFG +V+KVC CLLR G L+ + R ELS QVKN+LL+LIQ
Sbjct: 1 MVSQHGILLAVNIISDHFGPIVSKVCGCLLRHGALSLLEIGRRLELSPAQVKNSLLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQA+T+ P G G K T Y+ +FDN+LHR+RF+KFL+++ + + V L++GL
Sbjct: 61 HNCVQAYTS--PRG--GGDKTVTLYLAIFDNVLHRLRFSKFLSVVRVDIPESEV-LLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGN-LVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT +Q+ +R EG+ L + +R KLV AHYVERCP SEP P++ E
Sbjct: 116 LQNGRLTFEQLVERTIFKVPEGSPLPTREEIRMNFNKLVYAHYVERCPKSEPFFDPLAVE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + ++EQ+VV A +A RFS + + + ++ G
Sbjct: 176 QPTSTRK--RAPKIVEAVLSLEQKVVSTAALSDAERFSQIPYF-MEGSSSANDGHHAVAG 232
Query: 240 EKRKHDVLELDE-CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
KRKH+ LE+DE + E ++R NFE FI L+ K C + +A + G + A
Sbjct: 233 NKRKHEALEVDEEDSIIAESEFLWRINFERFIFCLKKKFCAERKKAKMRLGTLAIWEAFF 292
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 358
+A + +V + I E V + E G +MTLD + + L L E + + +
Sbjct: 293 EANVTNNDN----KTVTSPIDGILERVGQKEGGTSMTLDQIISVLNDL-ECTSTTNNPEE 347
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
++ D K++E +N+E+ES+V K++G++AY IFRLL K G +ETD+I+D T ++K+
Sbjct: 348 FTFDLNKLVETCRNDEIESLVKKKHGQEAYTIFRLLLKQGCPVETDEITDRTILDKQVVH 407
Query: 419 KILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ LYKLWKD Y+ E++ TG +QF +W+V + I +H +D ++HAALNL ++
Sbjct: 408 ETLYKLWKDEYIDSERVPSTSGTGTGSTQFFVWRV-KNIYREHFMDHLYHAALNLRQMIN 466
Query: 476 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
Y ELL L K L++R N +L + + D++++LFHDF
Sbjct: 467 Y----MAELL-LEGSKDEIKLRNRKN-------ILVLALTRHDESLMLFHDF 506
>gi|326514466|dbj|BAJ96220.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 186/509 (36%), Positives = 284/509 (55%), Gaps = 33/509 (6%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
KVC+CLLR+G L Q + R L QVKN+LLVLIQ NCVQAF++ P G + T
Sbjct: 10 KVCDCLLRQGALQLQEIVRRLNLPPGQVKNSLLVLIQHNCVQAFSSPSPRG----DRTMT 65
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGN 143
Y+ +F+N+LHR+RF+KF++++ + + L++GLL++GRLT Q+ R S EG
Sbjct: 66 LYLTIFNNVLHRLRFSKFISVIRADIPES-EALIEGLLQNGRLTFDQLVGRTISKVPEGT 124
Query: 144 LVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP-ARKKGSKSAKKIGEPETIE 201
+ + +R +LV+A YVERCP +EP P +E+ ARK+ K+A+++ ++E
Sbjct: 125 IRPAREEIRMNFNRLVSARYVERCPKAEPHFNPQEDEQSTTARKRAPKTAEEV---LSLE 181
Query: 202 QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQS 259
Q+VV A + RFS + D + +NV G KRKH E+DE E
Sbjct: 182 QKVVNTATLSDPERFSEIPYSMEDASKTNDRPHNVVAGAKRKHGAFEVDEELNSTIAENE 241
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 319
V++R NFE FI L+ K C D + L G + + +A + K NSV S+
Sbjct: 242 VLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSIG 297
Query: 320 SIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVV 379
I E++ + E G M++ ++ L +L ++ + ++ D K+IE +NEE+ES+V
Sbjct: 298 GILEKLGQKEGGAAMSIGQIQPVL---EDLQCTTSTGEEFTFDLHKMIEACRNEEIESLV 354
Query: 380 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV-VT 438
K+YG++A+ IFRLL G +ETD+I DTT ++K+ LYKLW DGY+ EK+
Sbjct: 355 KKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLWNDGYIDTEKIASAA 414
Query: 439 GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQD 498
G +QF +W+ + + +D ++HAALNL V+Y ELL L K L++
Sbjct: 415 GTGYAQFFVWRA-KNTFREQFVDNLYHAALNLRQMVNY----IAELL-LEGSKDETKLRN 468
Query: 499 RYNRIRKVRILLESSQMKLDDAILLFHDF 527
R N +L + + DD++LLF DF
Sbjct: 469 RKN-------ILILALTRHDDSLLLFCDF 490
>gi|218188842|gb|EEC71269.1| hypothetical protein OsI_03266 [Oryza sativa Indica Group]
Length = 476
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 194/532 (36%), Positives = 292/532 (54%), Gaps = 61/532 (11%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGSLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPESEA-LLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
L++GRLT Q+ +R S EG++ + +R KLV AHYVERCP EP P+ +E
Sbjct: 116 LQNGRLTFGQLVERTISKVPEGSITPAREEIRMNFNKLVFAHYVERCPKPEPFFDPLVDE 175
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
+ + +K ++ K + +I+++VV +A +A RFS + + D + + G
Sbjct: 176 QSTSSRK--RAPKTVEIALSIDKKVVNSAALSDAERFSEIPYIMEDASNANDSPRSSISG 233
Query: 240 EKRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 234 AKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEA 292
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASS 356
+A+ + NSV ++ I E + + E
Sbjct: 293 FFEASLME----RDNNSVTSPINGIMERLGQKEG-------------------------- 322
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 323 -----DLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQI 377
Query: 417 APKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
LYKLWKD Y+ E+++ TG +Q+ +W+V + + +D + HAALNL V+
Sbjct: 378 VHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV-KNTFREQFIDNLCHAALNLRQMVN 436
Query: 476 YELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
Y ELL L K L++R N +L + + DD+++LF DF
Sbjct: 437 Y----IAELL-LEGSKDDTKLRNRKN-------ILILALTRHDDSLMLFQDF 476
>gi|222619044|gb|EEE55176.1| hypothetical protein OsJ_03008 [Oryza sativa Japonica Group]
Length = 423
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/451 (37%), Positives = 256/451 (56%), Gaps = 33/451 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M++++G AV +I++HFG LV+KVC CLLR G L Q + R ELS QVKN+LLVLIQ
Sbjct: 1 MVSQHGILLAVAIISDHFGPLVSKVCRCLLRHGALPLQEIVRRLELSPGQVKNSLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF P G +G K T Y+ +FDNI+HR RF+KFL+I+ + + L++GL
Sbjct: 61 HNCVQAFNA--PRG--NGDKTVTHYLAIFDNIVHRQRFSKFLSIIRADIPES-EALLEGL 115
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L++G +T + + +R KLV AHYVERCP EP P+ +E+
Sbjct: 116 LQNGSITPAR-----------------EEIRMNFNKLVFAHYVERCPKPEPFFDPLVDEQ 158
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
+ +K ++ K + +I+++VV A +A RFS + + D + + G
Sbjct: 159 STSSRK--RAPKTVEIALSIDKKVVNTAALSDAERFSEIPYIMEDASNANDSPRSSISGA 216
Query: 241 KRKHDVLELD---ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
KRKH+ LE D + +A E V++RANFE F L+ K C D + L G + A
Sbjct: 217 KRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFCLKKKFCADRKKPKLKVGTHPIWEAF 275
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
+A+ + NSV ++ I E + + E G +MTLDH+ L +L S D
Sbjct: 276 FEASLME----RDNNSVTSPINGIMERLGQKEGGTSMTLDHITRVLEELN-CSPSSEDPD 330
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
S+ +D +I+E ++NEE+ES+V K+YG++A+ IFRLL + +ETDKI DTT ++K+
Sbjct: 331 SFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFRLLVRERGPVETDKIIDTTILDKQIV 390
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448
LYKLWKD Y+ E+++ + +L+
Sbjct: 391 HGTLYKLWKDDYIDTERILSGTGTGTHNILY 421
>gi|302808123|ref|XP_002985756.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
gi|300146665|gb|EFJ13334.1| hypothetical protein SELMODRAFT_424745 [Selaginella moellendorffii]
Length = 521
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 197/545 (36%), Positives = 298/545 (54%), Gaps = 43/545 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ Q+ + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPQLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQG 119
NCVQAF D +A +Y + D+I+ R F F+ ++ ++ + Q EL G
Sbjct: 61 HNCVQAFKVLDEDNL----EARLRYTAIVDHIVLRACFPLFVELIREKTGNDQSEELALG 116
Query: 120 LLEHGRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPIS 177
LL+HGRLTL+Q+ R A+ S E D S E L+ VERCP E +L S
Sbjct: 117 LLQHGRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFS 171
Query: 178 EEEGPAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKN 232
+ G R KK S+KK P E Q V+ AA PMEA RF + + +++
Sbjct: 172 DNAGDGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAA 228
Query: 233 SNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
++ + GEKRKH L + DE+ V++R NFE ++ LRHK C HV A
Sbjct: 229 ASTPSTGEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACACHVNFSFGSDAKT 286
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 352
V+ AML+AT E VK S L+L+ I +++S + T VR +L ++ E F+
Sbjct: 287 VVEAMLEATRKTETTVKAAFSDALTLNDIL--ILRS----DWTAPVVRNALKRMVEEGFI 340
Query: 353 DASSDS---YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
++ D+ Y++ +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+
Sbjct: 341 NSVGDAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEK 399
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG---ARQSQFLLWKVNRQILWKHVLDEMFHA 466
+ K+A ++LY+L K+ Y+ ++++ + A F LW V+ L VL++M+HA
Sbjct: 400 CLIPDKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHA 459
Query: 467 ALNLSLRVSYELDREKELLNLPADKRTGPL----QDRYNRIRKVRILLESSQMKLDDAIL 522
A NL ++ + L+ EKELL +P TG L Q + +R++ + +LE S KL + I+
Sbjct: 460 AYNLHRQIEHRLEHEKELLIIPT---TGSLSNEQQQKLDRLQSIVKILEVSIFKLMNTIM 516
Query: 523 LFHDF 527
L+ DF
Sbjct: 517 LY-DF 520
>gi|302820283|ref|XP_002991809.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
gi|300140347|gb|EFJ07071.1| hypothetical protein SELMODRAFT_430080 [Selaginella moellendorffii]
Length = 430
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 157/442 (35%), Positives = 256/442 (57%), Gaps = 40/442 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDGFADG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ DG G PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
K+ +A +T E++V++AA +A+RF + +++ G+ +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSGDLVTLDDSLITGHKR 230
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDS 358
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+ FV +S+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 359 YSI-------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++ D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEIEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 412 VEKKDAPKILYKLWKDGYLLME 433
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|147817006|emb|CAN62168.1| hypothetical protein VITISV_005985 [Vitis vinifera]
Length = 721
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/213 (63%), Positives = 167/213 (78%), Gaps = 5/213 (2%)
Query: 194 IGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD-EC 252
+ EP+TIEQ+ + AA PM+A RFSV+ N +DV +S NVT GEKRK D LELD E
Sbjct: 288 VEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDV----DDSPNVTAGEKRKQDALELDKET 343
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
G + E+ V++RANFE F+R LRHK CI +V+ LDDGAA VLSAML+AT S EKKVKT+N
Sbjct: 344 GASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLSAMLEATRSEEKKVKTEN 403
Query: 313 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQN 372
SVPLS+ +I+E V+KSEAGR+MTL+ VR SL+QLG V +++SYS+D + IIE+AQN
Sbjct: 404 SVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGAAESYSVDLKNIIELAQN 463
Query: 373 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 405
+EVES+ KRYGRDAYRIFRLLSKS RLLETDK
Sbjct: 464 DEVESITLKRYGRDAYRIFRLLSKSCRLLETDK 496
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 157/195 (80%), Gaps = 2/195 (1%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M T+YG + AVH+I++HFG+LVAKVC+CLLRKG T +V R+TEL +QVK+ +LVLIQ
Sbjct: 1 MATQYGVQLAVHLISSHFGNLVAKVCDCLLRKGTXTLASVIRFTELPPQQVKSCILVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
NCVQAF +Q GF + P+ TQY+ LF NILHR+RFAKFL I+S+E D++C E+++GL
Sbjct: 61 HNCVQAFAIQQEVGFGEAPRVVTQYMALFHNILHRMRFAKFLAIVSEELDKECEEILEGL 120
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+HGRLTL+Q+ DRAKS+++E V D+LRE+ +KLV AH+VERCPASEP L P SEEE
Sbjct: 121 LQHGRLTLEQILDRAKSNQREP--VVQDALRESFLKLVRAHFVERCPASEPFLAPPSEEE 178
Query: 181 GPARKKGSKSAKKIG 195
PARK+G+KSAK+ G
Sbjct: 179 TPARKRGAKSAKQWG 193
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 21/152 (13%)
Query: 397 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME---------------------KL 435
SG +ISDTTFVEKKD KILY+LWKD YL M KL
Sbjct: 570 SGITFYIGEISDTTFVEKKDTAKILYQLWKDEYLQMGGNLFKXIEEDILAIYMIPSVLKL 629
Query: 436 VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGP 495
+ G+RQSQFLLWKV + LW HVL+EM+H+ALNLSLRV+YEL++E+E++ LP +KR G
Sbjct: 630 NLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVAYELEQEQEIIQLPREKRVGA 689
Query: 496 LQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
L +R+ R+RKVRILLESS MKLDDAI+LF+DF
Sbjct: 690 LGNRFERLRKVRILLESSLMKLDDAIMLFNDF 721
>gi|302822625|ref|XP_002992969.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
gi|300139169|gb|EFJ05915.1| hypothetical protein SELMODRAFT_431118 [Selaginella moellendorffii]
Length = 430
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/442 (35%), Positives = 255/442 (57%), Gaps = 40/442 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A +I + FG+LV ++G L + R+T + + + L LIQ NCVQAF
Sbjct: 7 ACDLINDQFGELV--------QRGSLLLSEIARFTGIDVAPLGDCLKQLIQHNCVQAFRA 58
Query: 70 ---EQPDGFADG----PKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ DG G PK NT Y+++ DN+LHR+RF KF+T++ + + L+ LL+
Sbjct: 59 SVEQEHDGLGAGGRPAPKPNTFYMLILDNVLHRMRFPKFMTLVRDDIGSEAQGLLGALLQ 118
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HGRLTL Q+ RA + G++ S+++ V+LV AH++ERCP EP L P++EEE P
Sbjct: 119 HGRLTLDQLLKRAAECAQPGDVEVEMSVKKAFVELVEAHFIERCPLPEPTL-PLAEEEQP 177
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
K+ +A +T E++V++AA +A+RF + +++ + +++ G KR
Sbjct: 178 -NKRARMTA------QTRERRVLDAAAQSDALRFRLPASLQLQSEDLVTLDDSLITGHKR 230
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K E+D + D++ V++R N+E FIRRLRH+ C+ V + D G VL+ +L +
Sbjct: 231 K----EMDT-TLLDDKDVIWRVNYEEFIRRLRHQACVRLVSSKCDLGCGTVLACILDRSR 285
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DASSDS 358
AE+ V+ + S PL + +I E V K+E GR M L+ +R +L+Q+ FV +S+
Sbjct: 286 KAERSVRQRLSSPLEMEAIVEAVRKTEEGRCMPLERIRCALLQMTADGFVVDRAGEASEH 345
Query: 359 YSI-------DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++ D KI+++A+ E+E +V +R+GR RIFRLLS GR L+ +ISD +
Sbjct: 346 RALMPLGMFPDMRKILDVARQAEMEGIVLQRFGRKCCRIFRLLSTKGR-LDHKQISDKSL 404
Query: 412 VEKKDAPKILYKLWKDGYLLME 433
V K+A ++L KL K+ ++ +E
Sbjct: 405 VPSKEAWELLSKLVKEHFIELE 426
>gi|302785359|ref|XP_002974451.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
gi|300158049|gb|EFJ24673.1| hypothetical protein SELMODRAFT_414649 [Selaginella moellendorffii]
Length = 504
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 178/498 (35%), Positives = 270/498 (54%), Gaps = 35/498 (7%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M Y K A +I + FGDLV VCECL+ +G L+ + +T L+ + + LLVLIQ
Sbjct: 1 MAAGYAGKLACFLIKDQFGDLVHSVCECLISRGQLSLPEIGSFTLLARPHLASCLLVLIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF-DQQCVELVQG 119
NCVQAF D +A +Y + D+++ R F FL ++ ++ + Q EL G
Sbjct: 61 HNCVQAFKVLDEDNL----EARLRYTAIVDHVVLRACFPLFLELIREKTGNDQSEELALG 116
Query: 120 LLEHGRLTLKQMFDR-AKSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPIS 177
LL+HGRLTL+Q+ R A+ S E D S E L+ VERCP E +L S
Sbjct: 117 LLQHGRLTLEQLIKRDAECSNSE----DAQSQFMEAFTNLLQHKLVERCPRPEAVL-GFS 171
Query: 178 EEEGPAR--KKGSKSAKKIGEPETIEQQ---VVEAALPMEAMRFSVVTNVESDVGEKEKN 232
+ G R KK S+KK P E Q V+ AA PMEA RF + + +++
Sbjct: 172 DNAGDGRPAKKARGSSKKRSLPLNFETQVRRVLAAAAPMEAERFRGPSRW---IMDEDAA 228
Query: 233 SNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
++ + EKRKH L + DE+ V++R NFE ++ LRHK C HV A
Sbjct: 229 ASTPSTSEKRKHGALW--DSSSMDEKEVLWRVNFEECVKLLRHKACASHVNFSFGSDAKT 286
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 352
V+ AML+AT E VK S L+L+ I +++S + T VR +L ++ E F+
Sbjct: 287 VVEAMLEATRKTETTVKAAFSDALTLNDIL--ILRS----DWTAPVVRNALKRMVEEGFI 340
Query: 353 DASSDS---YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
++ D+ Y++ +KI+E+A+ EVES+VS+R+G+ + RI RLLSK G E IS+
Sbjct: 341 NSVGDAGSHYTVAMQKIVELARKTEVESIVSQRFGKPSSRILRLLSKKGG-SEQKAISEK 399
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG---ARQSQFLLWKVNRQILWKHVLDEMFHA 466
+ K+A ++LY+L K+ Y+ ++++ + A F LW V+ L VL++M+HA
Sbjct: 400 CLIPDKEAWQLLYQLMKERYIELQEVPKSAGDRAPARTFYLWHVDFSKLSSVVLEDMYHA 459
Query: 467 ALNLSLRVSYELDREKEL 484
A NL ++ + L+ EKE+
Sbjct: 460 AYNLHRQIEHRLEHEKEV 477
>gi|56202141|dbj|BAD73474.1| RNA polymerase III subunit-like protein [Oryza sativa Japonica
Group]
Length = 359
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/376 (35%), Positives = 206/376 (54%), Gaps = 25/376 (6%)
Query: 156 KLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMR 215
KLV AHYVERCP EP P+ +E+ + +K ++ K + +I+++VV A +A R
Sbjct: 5 KLVFAHYVERCPKPEPFFDPLVDEQSTSSRK--RAPKTVEIALSIDKKVVNTAALSDAER 62
Query: 216 FSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD---ECGVADEQSVVYRANFEGFIRR 272
FS + + D + + G KRKH+ LE D + +A E V++RANFE F
Sbjct: 63 FSEIPYIMEDASNANDSPRSSISGAKRKHNALEGDAELDSTIA-ENEVLWRANFEKFTFC 121
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
L+ K C D + L G + A +A+ + NSV ++ I E + + E G
Sbjct: 122 LKKKFCADRKKPKLKVGTHPIWEAFFEASLME----RDNNSVTSPINGIMERLGQKEGGT 177
Query: 333 NMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 392
+MTLDH+ L +L S DS+ +D +I+E ++NEE+ES+V K+YG++A+ IFR
Sbjct: 178 SMTLDHITRVLEELN-CSPSSEDPDSFILDLSRIVEASRNEEIESLVRKKYGQEAFTIFR 236
Query: 393 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV-TGARQSQFLLWKVN 451
LL + +ETDKI DTT ++K+ LYKLWKD Y+ E+++ TG +Q+ +W+V
Sbjct: 237 LLVRERGPVETDKIIDTTILDKQIVHGTLYKLWKDDYIDTERILSGTGTGNTQYFVWRV- 295
Query: 452 RQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLE 511
+ + +D + HAALNL V+Y ELL L K L++R N +L
Sbjct: 296 KNTFREQFIDNLCHAALNLRQMVNY----IAELL-LEGSKDDTKLRNRKN-------ILI 343
Query: 512 SSQMKLDDAILLFHDF 527
+ + DD+++LF DF
Sbjct: 344 LALTRHDDSLMLFQDF 359
>gi|355389059|gb|AER62472.1| hypothetical protein [Eremopyrum triticeum]
Length = 307
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 169/313 (53%), Gaps = 13/313 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFD 64
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPR 121
Query: 235 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 352
+ + +A + K NSV SL+ I E++ + E G M++ ++ L +L
Sbjct: 182 IWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPVL---QDLQCT 234
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT +
Sbjct: 235 TSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTIL 294
Query: 413 EKKDAPKILYKLW 425
+K+ LYKLW
Sbjct: 295 DKQIVHSTLYKLW 307
>gi|355389017|gb|AER62451.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 308
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S+ I E++ + E G M++ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAIETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389043|gb|AER62464.1| hypothetical protein [Taeniatherum caput-medusae]
gi|355389045|gb|AER62465.1| hypothetical protein [Taeniatherum caput-medusae]
Length = 307
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 109/313 (34%), Positives = 170/313 (54%), Gaps = 13/313 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRTNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E PAR++ K+A+++ ++EQ+VV A + RFS + D + +
Sbjct: 65 PREDESTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCPH 121
Query: 235 NVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN 292
N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 NAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHP 181
Query: 293 VLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV 352
+ + +A K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 IWESFFEANLYD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQCT 234
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT +
Sbjct: 235 TSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTIL 294
Query: 413 EKKDAPKILYKLW 425
+K+ LYKLW
Sbjct: 295 DKQIVHSTLYKLW 307
>gi|355389067|gb|AER62476.1| hypothetical protein [Hordeum bogdanii]
Length = 308
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 172/314 (54%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDYP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A+ + K NSV S I E++ + E G M++ +R L +L
Sbjct: 182 PIWESFFEASLTD----KDTNSVTSSRDGILEKLGQKEGGAAMSIGQIRPVL---EDLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLRKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGSAVETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389021|gb|AER62453.1| hypothetical protein [Secale cereale]
Length = 308
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPFFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVVGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGQIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + Y+ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEYNFDLSKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389051|gb|AER62468.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 171/315 (54%), Gaps = 12/315 (3%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 350
+ + +A + + NSV S+S I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMSGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 351 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
+ D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSNEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 411 FVEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389063|gb|AER62474.1| hypothetical protein [Henrardia persica]
Length = 308
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 171/314 (54%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV AHYVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYAHYVERCPKAEPHFD 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S++ I E++ + E G MT+ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIKPVL---EDLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389031|gb|AER62458.1| hypothetical protein [Pseudoroegneria tauri subsp. libanotica]
Length = 311
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVHARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCALT 237
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389041|gb|AER62463.1| hypothetical protein [Pseudoroegneria spicata]
Length = 311
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/314 (35%), Positives = 170/314 (54%), Gaps = 11/314 (3%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + ++ +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIQMNFNRLVHARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR+K K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARRKVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 SNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + + NSV S++ I E++ + E MT+DHV+ L L
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSINRILEKLGQKEGSAAMTVDHVKRVLGDLQCTLT 237
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 NSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 297
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 298 LDKQIVHSTLYKLW 311
>gi|355389049|gb|AER62467.1| hypothetical protein [Psathyrostachys juncea]
Length = 312
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 170/315 (53%), Gaps = 12/315 (3%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKANDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 350
+ + +A + + NSV S++ I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKIVLADLQCTTS 237
Query: 351 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTT 297
Query: 411 FVEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 298 ILDKQIVHSTLYKLW 312
>gi|355389025|gb|AER62455.1| hypothetical protein [Aegilops tauschii]
gi|355389027|gb|AER62456.1| hypothetical protein [Aegilops tauschii]
Length = 308
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEIDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S + I E++ + E MT+ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389023|gb|AER62454.1| hypothetical protein [Aegilops longissima]
Length = 308
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 109/314 (34%), Positives = 169/314 (53%), Gaps = 14/314 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R KLV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNKLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYGMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S + I E++ + E MT+ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKKDAPKILYKLW 425
++K+ LYKLW
Sbjct: 295 LDKQIVHSTLYKLW 308
>gi|355389019|gb|AER62452.1| hypothetical protein [Hordeum vulgare subsp. spontaneum]
Length = 302
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 14/304 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV+A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVSARYVERCPKAEPHFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ ARK+ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTTARKRAPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDRP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+NV G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNVVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S+ I E++ + E G M++ ++ L +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
++ + ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSTGEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKK 415
++K+
Sbjct: 295 LDKQ 298
>gi|355389047|gb|AER62466.1| hypothetical protein [Dasypyrum villosum]
Length = 303
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 166/304 (54%), Gaps = 14/304 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
LV+GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LVEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKK 415
++K+
Sbjct: 295 LDKQ 298
>gi|355389033|gb|AER62459.1| hypothetical protein [Dasypyrum villosum]
Length = 301
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 163/304 (53%), Gaps = 14/304 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP EP
Sbjct: 5 LIEGLLQNGRLTXDQLVGRTISKVPEGXIRPAREEIRMNFNRLVYARYVERCPKXEPYFN 64
Query: 175 PISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + ++ D K++E EE+ES+V K+YG++A+ IFRLL G +ETD+I DTT
Sbjct: 235 TTSDGEEFTFDLRKMVEACXXEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTI 294
Query: 412 VEKK 415
++K+
Sbjct: 295 LDKQ 298
>gi|355389035|gb|AER62460.1| hypothetical protein [Psathyrostachys juncea]
Length = 292
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 158/295 (53%), Gaps = 12/295 (4%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPHFD 64
Query: 175 PISEEE-GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +EE PAR++ K+A+++ ++EQ+VV A + RFS + D +
Sbjct: 65 PREDEERTPARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL-GELS 350
+ + +A + + NSV S++ I E++ + E MT+D ++ L L S
Sbjct: 182 PIWESFFEANLTD----RDTNSVTSSMNGILEKLGQKEGCAAMTVDQIKVVLADLQCTTS 237
Query: 351 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 405
D+++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +ETD+
Sbjct: 238 TSSEDRDAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQ 292
>gi|326523087|dbj|BAJ88584.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 23/293 (7%)
Query: 238 PGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
P RKH E+DE E V++R NFE FI L+ K C D + L G +
Sbjct: 6 PEVLRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWE 65
Query: 296 AMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDAS 355
+ +A + K NSV S+ I E++ + E G M++ ++ L +L ++
Sbjct: 66 SFFEANLTD----KDTNSVTSSIGGILEKLGQKEGGAAMSIGQIQPVL---EDLQCTTST 118
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
+ ++ D K+IE +NEE+ES+V K+YG++A+ IFRLL G +ETD+I DTT ++K+
Sbjct: 119 GEEFTFDLHKMIEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAVETDQIIDTTILDKQ 178
Query: 416 DAPKILYKLWKDGYLLMEKLV-VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
LYKLW DGY+ EK+ G +QF +W+ + + +D ++HAALNL V
Sbjct: 179 IVHSTLYKLWNDGYIDTEKIASAAGTGYAQFFVWRA-KNTFREQFVDNLYHAALNLRQMV 237
Query: 475 SYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+Y ELL L K L++R N +L + + DD++LLF DF
Sbjct: 238 NY----IAELL-LEGSKDETKLRNRKN-------ILILALTRHDDSLLLFCDF 278
>gi|355389065|gb|AER62475.1| hypothetical protein [Triticum monococcum subsp. aegilopoides]
Length = 283
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 150/281 (53%), Gaps = 13/281 (4%)
Query: 148 DSLRETLVKLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVE 206
+ +R KLV A YVERCP +EP P +E+ AR++ K+A+++ +++Q+VV
Sbjct: 13 EEIRMNFNKLVYARYVERCPKAEPYFNPQEDEQSTAARRRVPKTAEEVL---SLKQKVVN 69
Query: 207 AALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRA 264
A + RFS + D + +N G KRKH E+DE E V++R
Sbjct: 70 TATLSDPERFSEIPYGMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRV 129
Query: 265 NFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEE 324
NFE FI L+ K C D + L G + + +A + K NSV S + I E+
Sbjct: 130 NFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEK 185
Query: 325 VIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYG 384
+ + E MT+ ++ L+ +L + + ++ D K++E +NEE+ES+V K+YG
Sbjct: 186 LGQKEGTAAMTIGDIKPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYG 242
Query: 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 425
++A+ IFRLL G +ETD+I DTT ++K+ LYKLW
Sbjct: 243 QEAFTIFRLLVTQGCAVETDQIIDTTILDKQIVHSTLYKLW 283
>gi|355389057|gb|AER62471.1| hypothetical protein [Eremopyrum bonaepartis]
Length = 263
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 13/273 (4%)
Query: 156 KLVTAHYVERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAM 214
+LV A YVERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A +
Sbjct: 1 RLVYARYVERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPE 57
Query: 215 RFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRR 272
RFS + D + +N G KRKH E+DE E V++R NFE FI
Sbjct: 58 RFSEIPYSMEDASKTNDCPHNTVVGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFC 117
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
L+ K C D + L G + + +A + K N V S++ I E++ + E G
Sbjct: 118 LKKKFCADRKKPKLKVGTHPIWESFFEANLTD----KDTNCVTSSINGILEKLGQKEGGA 173
Query: 333 NMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 392
MT+ ++ L +L + + ++ D K++E +NEE+ES+V K+YG++A+ IFR
Sbjct: 174 AMTIGQIKPVL---EDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFR 230
Query: 393 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 425
LL G +ETD+I DTT ++K+ LYKLW
Sbjct: 231 LLVTQGCAVETDQIIDTTILDKQIVHSTLYKLW 263
>gi|355389053|gb|AER62469.1| hypothetical protein [Australopyrum retrofractum]
Length = 258
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 142/265 (53%), Gaps = 10/265 (3%)
Query: 164 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 222
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYS 57
Query: 223 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 280
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAD 117
Query: 281 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 340
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMK 173
Query: 341 ASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 400
L L + ++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 174 KVLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCA 233
Query: 401 LETDKISDTTFVEKKDAPKILYKLW 425
+ETD+I DTT ++K+ LYKLW
Sbjct: 234 VETDQIIDTTILDKQIVHSTLYKLW 258
>gi|355389055|gb|AER62470.1| hypothetical protein [Australopyrum retrofractum]
Length = 257
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 141/264 (53%), Gaps = 10/264 (3%)
Query: 165 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 223
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPHFNPQEDEQSTAARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 224 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 EDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADR 117
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 341
+ L G + + +A + K NSV S + I E++ + E MT+DH++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTVDHMKK 173
Query: 342 SLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 401
L L + ++++ D K++E +NEE+ES+V K+YG++A+ IFRLL G +
Sbjct: 174 VLEDLQCSTTSSEDGEAFTFDLRKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCAV 233
Query: 402 ETDKISDTTFVEKKDAPKILYKLW 425
ETD+I DTT ++K+ LYKLW
Sbjct: 234 ETDQIIDTTILDKQIVHSTLYKLW 257
>gi|159475425|ref|XP_001695819.1| hypothetical protein CHLREDRAFT_174488 [Chlamydomonas reinhardtii]
gi|158275379|gb|EDP01156.1| predicted protein [Chlamydomonas reinhardtii]
Length = 535
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 148/580 (25%), Positives = 248/580 (42%), Gaps = 106/580 (18%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++ + +GD V KV + L+ KG L ++ R T ++ VK ALL+LIQQNC
Sbjct: 6 QYACDLACRLVQDQYGDAVGKVFKLLVSKGQLQLGDIVRGTSMNPNIVKQALLILIQQNC 65
Query: 64 VQAFTTEQP-DGFADGPKANTQ-YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ ++ QP + GP+ + Y D +L +R + L ++
Sbjct: 66 INSYL--QPGEETLRGPRPSFYLYEANTDRVLQIIRMDQVLGSVA--------------- 108
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISE 178
RL K+ +KE DS+ T + LV AHYVER P P +P +
Sbjct: 109 --ARL--------GKALDKETR----DSISNTFISLVQAHYVERSP---PCSLPPPAVRP 151
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAA---LPMEAMRFSVVTNVE-----SDVGEKE 230
R + +KSA E +Q + L E RF V + SD G++
Sbjct: 152 HPNSVRTRKAKSAASNTEGYAADQAAALKSFEELSFEKQRFKVPAELALEMFMSDEGDER 211
Query: 231 KNSNNV--------------------------------TPGEKRKHDVLELDECGVADEQ 258
S + P + + + A
Sbjct: 212 AASPDAKMEDADGAGESAGGSGAGGSGAGGGRGRKKRAAPDDDDELAIKITAPAKKAKPA 271
Query: 259 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSL 318
V++R N + F RR RH+ + VR D+ AA V+SAML A E VK S+ LS+
Sbjct: 272 VVLWRVNNDEFNRRFRHQAIVGLVREKFDEDAAGVVSAMLAAGRPFESSVKLPPSLGLSV 331
Query: 319 SSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESV 378
E R++ L AS S S SY ++ +++I++ ++ E+V
Sbjct: 332 PLCEE--------RSVQLSEDEAS-------SPAWRGSASYVVNSQRVIDLIMLKQTEAV 376
Query: 379 VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 438
V R+ R+FRLL+ G+ LE +I+D + KD ++LY + + G+++++ + T
Sbjct: 377 VKARFDVAGLRVFRLLALRGQ-LEQKQIADLAMLPAKDTRELLYLMLQGGFVMLQDIPKT 435
Query: 439 GARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR---- 492
R F W+VN L +++ +A + R+ +E ++EK+L+ L +
Sbjct: 436 ADRAPSRTFYTWRVNMTSLSDSTAAQLYRSAGRVWQRLQFETEKEKDLVALIESAKETRT 495
Query: 493 -----TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
T + R+++V ++E+S LD I +F+DF
Sbjct: 496 VNFNLTTAQRQAVARLKRVNEVMETSLAHLDQMIAVFNDF 535
>gi|355389061|gb|AER62473.1| hypothetical protein [Henrardia persica]
Length = 255
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 142/265 (53%), Gaps = 13/265 (4%)
Query: 164 ERCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV 222
ERCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 ERCPKAEPHFDPREDEQSTSARRRVPKTAEEVL---SLEQKVVNIATLSDPERFSEIPYS 57
Query: 223 ESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCID 280
D + +N G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 MEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRINFEKFIFCLKKKFCAD 117
Query: 281 HVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR 340
+ L G + + +A + K NSV S++ I E++ + E G MT+ ++
Sbjct: 118 RKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMTIGQIK 173
Query: 341 ASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRL 400
L +L + + ++ D K++E +NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 174 PVL---EDLQCTTSDGEEFTFDLHKMVEACRNEEIESLVKKKYGQEAFTIFRLLVTQGCA 230
Query: 401 LETDKISDTTFVEKKDAPKILYKLW 425
+ETD+I DTT ++K+ LYKLW
Sbjct: 231 VETDQIIDTTILDKQIVHSTLYKLW 255
>gi|384247960|gb|EIE21445.1| hypothetical protein COCSUDRAFT_43175 [Coccomyxa subellipsoidea
C-169]
Length = 558
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 140/557 (25%), Positives = 240/557 (43%), Gaps = 59/557 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I FGD V +VC L +G T V R + L V++ALLVL+Q N V + QP
Sbjct: 15 LIKEFFGDTVERVCNVLTARGQQTLPEVVRASGLPPSAVRSALLVLLQHNFVISELV-QP 73
Query: 73 DGFADGPKANT-QYVVLFDNILHRVRFAKFLTILSQEF-----DQQCVELVQGLLEHGRL 126
D P+A Y I+ +R + L + +E+ V++++ LL HGRL
Sbjct: 74 DTGLRAPQAPYFLYHADTGAIIQILRRPRILQHVQREYGGPGESDMAVKIIEVLLAHGRL 133
Query: 127 TLKQMFD--RAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPAR 184
L Q+ A+ EG + L + LV ++ER P P MP+ + +
Sbjct: 134 RLDQVAAAVAARMERPEGEV--RGDLHARFISLVNGRHIERVP---PADMPLRKPVAFTK 188
Query: 185 KKGSKSAKKIGEPETIEQ------QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ ++A K G PE Q Q+ + + E R D + S
Sbjct: 189 AQAKRAAPKPGTPEAAVQEAEAVRQLAQDSYSAERFRLPRDLTGAPDTTRDPRLSKQAGR 248
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
G++++ D + A ++R NFE F RLR + C ++V A +++A+L
Sbjct: 249 GKRKRDDADAASQRSDAASAQELWRVNFEEFNCRLRDEACAEYVAVIYGREAGALVAALL 308
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM----TLDHVRASLVQLGELSFVDA 354
+ + + ++S + + R+ L A+ V LGEL+ DA
Sbjct: 309 TCAARQPGGSRLDSGASAAVSVLAAAAALPQMRRSRPDLPVLTGAAAARV-LGELT-EDA 366
Query: 355 SS------------DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 402
S +++ +D I + + +E++V +R+ R+FRLL + + LE
Sbjct: 367 RSGVTRSGSSGVANEAFIVDTGAITRAIRQQHIEALVRERFPPIGMRVFRLLC-AKKQLE 425
Query: 403 TDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVL 460
+++D V +DA ++LY++ + G+L ++ + T + F W+V+ + + V
Sbjct: 426 QKQVADYAMVPVRDARELLYRMLRAGFLTLQDVPRTADHSASRTFYTWRVDSTAVTRRVG 485
Query: 461 DEMFHAALNLSLRVSYELDREKELLNL------------PADKRTGPLQDRYNRIRKVRI 508
+E+ AA NL R+ +EL E + P DK R+ +V
Sbjct: 486 EELLQAAGNLRARLHHELSEHAEAPKVLKRVEAGDTALQPHDK------AEVERVCRVSA 539
Query: 509 LLESSQMKLDDAILLFH 525
LLE+ + LD I LFH
Sbjct: 540 LLETRLIALDPLIALFH 556
>gi|307104061|gb|EFN52317.1| hypothetical protein CHLNCDRAFT_139103 [Chlorella variabilis]
Length = 589
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 136/568 (23%), Positives = 246/568 (43%), Gaps = 69/568 (12%)
Query: 20 DLVAKVCE----CLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
+++ VCE CL+ G + + + L Q+ +A+LVLIQ N V + E+P
Sbjct: 29 EILGPVCEQAIACLINHGMQQYGELLKTSGLPAGQLSSAVLVLIQHNYVNCYLKEEPPTL 88
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRA 135
+ T Y IL +R +F+T +S E Q+ V LV+ L EHGRL Q+ +
Sbjct: 89 RGPGPSYTLYEAALPRILQSLRVPRFMTHISDEHGQESVRLVRNLTEHGRLRWDQLLEAV 148
Query: 136 --KSSEKEGNLVDLDS-LRETLVKLVTAHYVERCPASEPLLMPISEEEGP-ARKKGSKSA 191
+S+E+ G L LV Y+ER P L P + P ARKK +
Sbjct: 149 VRESAEEGGEAAPAPGVLLNQFRSLVMQRYIERVPPCT--LPPPPQHVHPNARKKKAPPK 206
Query: 192 KKIGEPETIEQQVVEAAL--PMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV--- 246
E + ++ +AAL + +RF + + + S G+ + P KRK
Sbjct: 207 PGSEEEADMHREQADAALRHDYQQVRFRLPSELMSPSGDAVEVDAQAKPAGKRKRGGKDA 266
Query: 247 ------------LELDECGVA-------------------DEQSVVYRANFEGFIRRLRH 275
E + G A +E V++R N++ F RR R+
Sbjct: 267 AAASSEAEPAKKRERKKAGEAGAEGGSAASLPAQAAAAGDEEAPVLWRVNYDEFNRRFRN 326
Query: 276 KGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT 335
+ + A + +L A + E+ + +V LS+ + + + + +
Sbjct: 327 DVIVSTAKLKYGVHAGQAVEGLLVANACFEQTAHCEETVVLSVGDVSGALRRIHSNEDPP 386
Query: 336 LDHVRASLVQLGE--LSFVDA-----SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAY 388
D++ L L + + F+++ + Y + +++ A+ +++ V+ ++G
Sbjct: 387 -DNLACVLSDLADDDMHFLESRGSGPGGEQYVLSISRVLRFARLYQLKGVIRTKFGVAGM 445
Query: 389 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FL 446
RI+RLL +G+ LE +++D V K++A + LY + K GYL ++ + T R F
Sbjct: 446 RIWRLLLLNGQ-LEQKQVADLAMVTKEEAREALYAMLKGGYLALQDVPRTNDRAPSRTFY 504
Query: 447 LWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK---ELLNLPA-----DKRTGPLQD 498
W+ N + +++ AA NL R+ +E ++ ELL LP ++R G +
Sbjct: 505 TWRANADTTIARLTSDLYRAAGNLHARLEHEARKQSELWELLELPVAPSIIERRQGEIAA 564
Query: 499 RYNRIRKVRILLESSQMKLDDAILLFHD 526
++ V LE++ + LD + +F D
Sbjct: 565 ----LKAVTSRLEAALLDLDWQVCIFAD 588
>gi|432102040|gb|ELK29859.1| DNA-directed RNA polymerase III subunit RPC3 [Myotis davidii]
Length = 861
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 115/490 (23%), Positives = 215/490 (43%), Gaps = 57/490 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 212 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSPDQVKKALCVLIQHNLVT------- 264
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 265 --YQVHKRGTVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSALV 322
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP P +E P
Sbjct: 323 KRVADRLTETMEDGKTMDYAEVSSTFVRLADTHFVQRCPLVSP-----TENSEP------ 371
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR----KH 244
G P+ V+ + S++ G++ ++S + GE + KH
Sbjct: 372 ------GPPQPAPTLVINENDMYLVPKLSLIGK-----GKRRRSSEDDATGEPKAKRLKH 420
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D + + ++AN + F + R + + V +D ++ ++ ML+ +
Sbjct: 421 ST---DNKEPLPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS--- 474
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS--- 358
++ T + P + E+ +S G N++ + L L + L FV S DS
Sbjct: 475 --EITTPSGAPFTQPLSSNEIFRSLPTGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGG 532
Query: 359 -YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
Y I+ K++ +ESVV +R+G RIFRL+ + + LE ++ D + K+A
Sbjct: 533 MYVINLHKVLGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEA 591
Query: 418 PKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+LYK+ + ++L++++ T A F L+ VN + +L + + NL R
Sbjct: 592 KDMLYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSVANLIERRQ 651
Query: 476 YELDREKELL 485
+E K LL
Sbjct: 652 FETKENKRLL 661
>gi|41053897|ref|NP_956526.1| DNA-directed RNA polymerase III subunit RPC3 [Danio rerio]
gi|54039272|sp|Q7ZUX1.1|RPC3_DANRE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|28278013|gb|AAH46092.1| Polymerase (RNA) III (DNA directed) polypeptide C [Danio rerio]
Length = 539
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 213/483 (44%), Gaps = 38/483 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V L+R G LT + + T+L+ + VK +L VL+Q T P
Sbjct: 12 LLQEHFGDVVENVGTHLIRNGVLTLRALAHETKLALDLVKKSLCVLVQ----HGMCTFGP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP +Y + ++ILH +R+ +++ + +V+ +L+ G++T+
Sbjct: 68 G--RRGPAGPVEYHINCEHILHMLRYPRYIYTAKSLYGDTGELIVEEILQRGQMTMSSTV 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR + EG +D + + +LV H+++RCP M +E G +
Sbjct: 126 KTVADRLTHNMPEGQSMDYNEVVSAFSRLVETHFLQRCPP-----MASAESSGTG---SA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
++ + +P E LP ++ S+ GE ++ + +K K D
Sbjct: 178 ETPPAVTQPSNPESHPDCYKLPYISLSGHGKRRRSSEDGEADQRA-----AKKAKTDS-- 230
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
ECG ++ + ++ NFE F R + I V LD + ++ ML+ S
Sbjct: 231 -SECG---DEGIHWQVNFERFHLHFRDQAIISAVSCKLDQTSGEIVRTMLR-MSEVTTSA 285
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSIDFE 364
+ LS + I+ + + LD LV + FV + DS + ++
Sbjct: 286 NAAFTQALSANEIFRALPSNYNIARPILDQYLTLLVD-DPMEFVGKAGDSGGGMFVVNLH 344
Query: 365 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 424
+ + +ESVV +R+G + RIFRLL + R LE ++ D + K+A ++LY L
Sbjct: 345 RALANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKEMLYTL 403
Query: 425 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 482
+ + ++++ T A F L+ VN+ + +L + NL R YE K
Sbjct: 404 LSENLVQLQEIPKTPDHAPSRTFYLYAVNQLPTARLLLQHCYKTVGNLIERRLYETKENK 463
Query: 483 ELL 485
LL
Sbjct: 464 RLL 466
>gi|84370055|ref|NP_001033600.1| DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|124021674|sp|Q2TBL4.1|RPC3_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|83638574|gb|AAI09973.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Bos
taurus]
Length = 533
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/498 (23%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P VV + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + +V T + P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|350583445|ref|XP_003125853.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Sus scrofa]
Length = 514
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 222/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTRTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKHATDNKEPSPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHKCYKSV 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|296489517|tpg|DAA31630.1| TPA: DNA-directed RNA polymerase III subunit RPC3 [Bos taurus]
gi|440903799|gb|ELR54406.1| DNA-directed RNA polymerase III subunit RPC3 [Bos grunniens mutus]
Length = 533
Score = 121 bits (304), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 119/498 (23%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P VV + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVVSEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + +V T + P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|426216419|ref|XP_004002460.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Ovis
aries]
Length = 534
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y + +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCNRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+LV H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E G P V+ + S++ G++ ++S+
Sbjct: 167 EN------------SDTGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRPKQSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + +V T + P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSV 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|255071113|ref|XP_002507638.1| predicted protein [Micromonas sp. RCC299]
gi|226522913|gb|ACO68896.1| predicted protein [Micromonas sp. RCC299]
Length = 493
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/541 (24%), Positives = 235/541 (43%), Gaps = 80/541 (14%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
+Y A ++T FG K+C +L G T + + T LS + + ALL+L Q N
Sbjct: 9 QYEISLACGIVTESFGKDPGKICRAMLYHGSRTLRETVQETGLSPSRSQRALLILAQHNV 68
Query: 64 VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 123
V + + QY IL R+R+ ++L + + L++ LLE+
Sbjct: 69 VLVIPESRDED-------ECQYYTKLGVILERLRYPQYLLFAQEHYRGSHNLLIECLLEN 121
Query: 124 GRLTLKQMFDRAKSSEKEGNLVDL-----DSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GRL Q+ +S+ E + + L S R+ L +L + S PL + E
Sbjct: 122 GRLDEHQLMA-GIASKTESDRIGLKRAIVSSSRQALAQLAEDQLI----ISVPLFI---E 173
Query: 179 EEGPARK----KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
G +R +G S + P +++ +A E D+ E ++N+
Sbjct: 174 SNGTSRSNFVTRGQTSVSQNSVPSQTVKKIDDAG-----------RKTEDDIKEGKQNN- 221
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
++ N + F RLR C R + + A ++L
Sbjct: 222 --------------------------LWLINCDEFTFRLRRDACAAVFREKVGEPARHLL 255
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDA 354
L+ + N + S++ + +G TL +++ S Q S ++
Sbjct: 256 ---LEEVEFNNEAFLLSNKIDTPRKSVHGSSFRDYSGLVQTLPNLKYSTCQ----SCINN 308
Query: 355 SSDSY-SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
+ + +I + ++ + +++E+E+VV +R+G A RIFRLL R LE +I++ +
Sbjct: 309 NEAHFHNIKLKHVMSLVRSKEIEAVVRERFGGPACRIFRLLLMK-RNLEQKQIAEMAMIP 367
Query: 414 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 471
KD ++LYKL K Y+ ++++ T A F LW+V+ + + V E+ HA N+
Sbjct: 368 VKDTRELLYKLLKAKYVQIQEVARTSDHAPSRTFYLWRVDLPYVEEQVGREIHHATFNVR 427
Query: 472 LRVSYELDREKE-LLNLPADKRTG--PL----QDRYNRIRKVRILLESSQMKLDDAILLF 524
R+ +E+ RE+E LL L + T PL +D R++ V LE S M+L++ L F
Sbjct: 428 ARLMFEMSREQETLLLLGKAQHTNDFPLTMKQRDSLIRMKTVAARLECSMMRLNELGLFF 487
Query: 525 H 525
+
Sbjct: 488 N 488
>gi|409082490|gb|EKM82848.1| hypothetical protein AGABI1DRAFT_68847 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 541
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/485 (24%), Positives = 217/485 (44%), Gaps = 51/485 (10%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
A + + D L R+RF KF+ + Q F + ELVQ +L+HG+L
Sbjct: 66 ----HAQSDEGTEVFEFNVDECLMRLRFGKFVHMAQQLFGKAGAELVQSILDHGKLRSPD 121
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ + + V R + KLV+ +Y++ P++ +L +S + + +G +
Sbjct: 122 ILRLLGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEK 173
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLEL 249
AK G P E ++ A + R G K K +N+ V KRK L
Sbjct: 174 AKISGFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----L 225
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E + ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V
Sbjct: 226 EETDEIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVA 285
Query: 310 TKNSVPLSLSSIYEE-----------VIKSEAGRNMTLDHVRASLVQLGE--------LS 350
S P+S+ ++ + V+ + N T ++ G+ S
Sbjct: 286 EVRSEPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAAS 345
Query: 351 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
F+ +S ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS
Sbjct: 346 FISLNSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVV 404
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 468
+ KD +L L D + +++ + R F LW V++ + +L +++ +
Sbjct: 405 MMAGKDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLY 464
Query: 469 NLSLR 473
N+S+R
Sbjct: 465 NISVR 469
>gi|290991727|ref|XP_002678486.1| predicted protein [Naegleria gruberi]
gi|284092099|gb|EFC45742.1| predicted protein [Naegleria gruberi]
Length = 597
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/461 (22%), Positives = 228/461 (49%), Gaps = 25/461 (5%)
Query: 85 YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNL 144
Y V+ +NI+ R++ AK L + + EL+ LL+HGRLT+K++ +A + + +
Sbjct: 144 YQVIIENIIMRLKSAKLLYTIRTSYGIDAEELLHILLQHGRLTMKELIQKALENITQTDY 203
Query: 145 VDLDSLRET-----LVKLVTAHYVERCPASEPLLMPI--SEEEGPARKKGSKSAKKIGEP 197
++T K+V +++R +P + I E++ A++ GS S + +
Sbjct: 204 TFATESKKTSFITAFQKMVKDRFIKRV---QPYVSSIQLQEQKKNAKEGGSNSTTDLLQK 260
Query: 198 ETIEQQVVEAALPMEAMRFSV-----VTNVESDVGEKEKNSNNVTPGE--KRKHDVLELD 250
+ + + + R ++ + E + +K+ S+ ++P E + D ++ D
Sbjct: 261 YSKQNKESKKKSDKSKKRKTIEDEDGSSQYEPEKKKKKGTSSEISPLEFDTEEFDSIDED 320
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 310
E + D +++++ N+ FIR R++ I +V + + A+++ A T+ ++
Sbjct: 321 EIHI-DAENILWTTNYSQFIRTFRNESIIKYVETKMGEQFASIVKAAFDETAPYQRSKND 379
Query: 311 KNSVPLSLSSIYEEVIKSEA-GRNMTLDHVRASLVQLGELSFVDA-SSDSYSIDFEKIIE 368
S PL +Y+ + ++E GR + +++ S + EL + A D+Y I+ + + +
Sbjct: 380 PMSTPLKFEKLYDRISETEEIGRKVLENNL--SFLCNPELDILRAMGKDTYFINLKGVAD 437
Query: 369 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 428
+ +E E ++S++Y R+FRLL + + LE I++ + +A +L + +
Sbjct: 438 KLKKQETEVIISQKYSVIGCRLFRLLLEK-KYLEQTHIAECALLPPCEARTLLMNMLRGS 496
Query: 429 YLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 486
L ++++ + R +Q F LW V + +++ ++D+M+ + NL +R+ E E
Sbjct: 497 ILHLQEVPKSKDRSAQQTFFLWSVKLEQVYEKIIDDMYKSVRNLRIRLKKEQQHIIESGI 556
Query: 487 LPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
L + + +++ R++ + LE+S +KL D I LF DF
Sbjct: 557 LESTYLSEEQEEQIRRLKNIEDRLEASLIKLVDLITLFEDF 597
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CV 64
AV ++ + FGD++ KV LL +GP T ++ + T L QV+NALLVLIQ N CV
Sbjct: 7 AVEILNDQFGDIIGKVGSVLLEQGPQTMTDLIQNTSLQFPQVRNALLVLIQHNMCV 62
>gi|432908643|ref|XP_004077962.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oryzias latipes]
Length = 543
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 120/497 (24%), Positives = 209/497 (42%), Gaps = 63/497 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q +
Sbjct: 12 LLQEHFGEVVEKVGRNLLKSGTQNLRAIVHETGLSVDLVKKSLCVLVQHGACSFIQGRK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP + T+Y D +L +R+ +++ + +++ LL+ G +T+
Sbjct: 71 -----GPGSPTEYKAHCDRVLRILRYPRYIYTAKTLYGDTGELIIEELLQRGHMTMSNTV 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR S EG+ +D + T KLV H+++RCP PA G+
Sbjct: 126 KTVADRLTQSMDEGSSMDYGEVSATFSKLVETHFLQRCP--------------PAAGAGT 171
Query: 189 KSAKKIGEPETIEQQVVEAALP---MEAMRFSVVT-------NVESDVGEKEKNSNNVTP 238
+ + + A P + R VT ++ S+ GE ++N+
Sbjct: 172 TGSSQTANSTSAAPASSTAPTPESFPDCYRVPQVTLIGRSKRSLASEEGEDQRNAKKA-- 229
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
++D DE + ++ NFE F + R + I V LD ++ ++ ML
Sbjct: 230 ---------KMDPETHGDE-GIYWQVNFERFHQHFRDQTIISAVANKLDQTSSEIVRTML 279
Query: 299 Q----ATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDA 354
+ TSS K PLS + I+ + + LD LV + FV
Sbjct: 280 RMSEVTTSSTAPCTK-----PLSANEIFRSLPATYNIPRHILDQYLTLLVD-DPMEFVGK 333
Query: 355 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
+ +S Y ++ + + +ES+V +R+G + RIFRLL + R LE ++ D
Sbjct: 334 AGESGGGMYIVNLNQALANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFA 392
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 468
+ K+A +LY L + ++++ T A F L+ VN+ + +L +
Sbjct: 393 MIPAKEAKDMLYTLLSQNLVQLQEIPKTPDFAPSRTFYLYTVNQLPTARLLLQNCYKTVA 452
Query: 469 NLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 453 NLMERRLFEAKESKRLL 469
>gi|291398107|ref|XP_002715432.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C (62kD)
[Oryctolagus cuniculus]
Length = 534
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 222/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSPDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y ++L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSHMLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP ++P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----VVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E+ S S P + + +P + +++ G++ ++S+
Sbjct: 167 ED--------SDSGPPPPAPTLVINEKDMYVVP----KLNLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKQSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|170111356|ref|XP_001886882.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638240|gb|EDR02519.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 539
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 124/500 (24%), Positives = 219/500 (43%), Gaps = 60/500 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M + + V +I ++FG L AK+ LL +G L + R+T L V+ +LVL+Q
Sbjct: 1 MADSHTARLCVEIIHSNFGPLTAKIASVLLVRGRLPLPQLTRFTALRPRTVRACILVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
N + +++ + F V D L R+RF KF+ + F + E+VQ +
Sbjct: 61 HNIIWHVLSDEGEMFE----------VNIDECLMRLRFGKFIYKSEELFGKPAAEVVQVI 110
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS-----EPLLMP 175
L+HG+L + + + +G + + + + KLV+ HY++ P++ P
Sbjct: 111 LDHGKLKMPDIMALLGIYDGKG----IIAYTQAIHKLVSGHYLK--PSTTLSHISPCDKR 164
Query: 176 ISEEEGPARK-KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
I E RK G +AK++ + ++V EA L E +G K K +
Sbjct: 165 IQYEAEEKRKISGFPTAKELRQA----KEVAEARLKRE-------EEEAEKIGLKRKAKD 213
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
KRK E + + +V +R N+E F LR+ + V+ + AA V+
Sbjct: 214 QSGRSAKRK-----ASESEESVDDAVYFRVNYERFNVHLRNGLIVAAVKERFNHQAALVI 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSE-AGRNMTLDHVRASLVQ-----LG- 347
A ++ T ++ V S P+S+++I ++ + E G+ + + S LG
Sbjct: 269 RAAMKVTEQSQLSVSEVRSEPISVANIMTQLPEDEDLGKGLAHSSKKTSNATCIKDYLGM 328
Query: 348 ------------ELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 395
E SFV + ++FE + + VESV +++G + RI RLLS
Sbjct: 329 LSSADNPTAAGRESSFVSFGTSKVQVEFEVVGRRLRRRLVESVAREKHGVEGVRILRLLS 388
Query: 396 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 453
+G++ E +IS + KD +L L D + +++ + R F LW V+
Sbjct: 389 DTGKMDE-KQISKIVMMAPKDVRPLLAALASDSLISTQEVPKSADRNPTRTFYLWYVDHN 447
Query: 454 ILWKHVLDEMFHAALNLSLR 473
+L +F N+S+R
Sbjct: 448 KAHLAILGNVFKTLYNISMR 467
>gi|426200322|gb|EKV50246.1| hypothetical protein AGABI2DRAFT_199804 [Agaricus bisporus var.
bisporus H97]
Length = 541
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 216/485 (44%), Gaps = 51/485 (10%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
VHV HFG L A+V LL +G L+ + RYT+L + ++L L+Q N +
Sbjct: 14 VHV---HFGSLAAQVVSVLLTRGRLSLPQILRYTQLKPRIARASILALVQHNLLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
A + + D L R+RF K + + Q F + ELVQ +L+HG+L
Sbjct: 66 ----HAQSDEGTEVFEFNVDECLMRLRFGKIVHMAQQLFGKAGAELVQSILDHGKLRSPD 121
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ + + V R + KLV+ +Y++ P++ +L +S + + +G +
Sbjct: 122 ILRLLGVHDSKSITVH----RGVMHKLVSENYLK--PST--VLSHVSPADKQIKYEGEEK 173
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN-VTPGEKRKHDVLEL 249
AK G P E ++ A + R G K K +N+ V KRK L
Sbjct: 174 AKISGFPTAKE---LKQAKQVAEARMRREEEEAGKAGLKPKATNHAVHRARKRK-----L 225
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E + ++ +R NF+ F +R+ + R ++ AA+VL A+L T S ++ V
Sbjct: 226 EETDEIVDNTIYFRVNFDKFNIHIRNTLIVRAARNRYNEEAASVLRAILHLTESWQRNVA 285
Query: 310 TKNSVPLSLSSIYEE-----------VIKSEAGRNMTLDHVRASLVQLGE--------LS 350
S P+S+ ++ + V+ + N T ++ G+ S
Sbjct: 286 EVRSEPVSVPNLVVKLANEDNLARGLVLAVKKPSNTTCIKEYLGMLSCGDNPTAVGKAAS 345
Query: 351 FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
F+ +S ++F+ I + +ESV +R+G + RI RLL +G+ ++ +IS
Sbjct: 346 FISLNSSKVQVEFDVIGRRLRRHVLESVTRERHGNEGVRILRLLMDTGK-MDDKQISKVV 404
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 468
+ KD +L L D + +++ + R F LW V++ + +L +++ +
Sbjct: 405 MMAGKDVRALLTALATDSLISTQEVPKSADRNPTRTFYLWYVDQHKAFSTILGQVYKSLY 464
Query: 469 NLSLR 473
N+S+R
Sbjct: 465 NISVR 469
>gi|47207522|emb|CAG14088.1| unnamed protein product [Tetraodon nigroviridis]
Length = 542
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/494 (24%), Positives = 214/494 (43%), Gaps = 53/494 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN-CVQAFTTEQ 71
++ HFG++V KV LL+ G + + T + + VK AL VL+Q CV
Sbjct: 12 LLREHFGEVVEKVGTHLLKSGAQNLRTILHETGMPLDLVKKALCVLVQHGICVFRHR--- 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL--- 128
GP T Y D IL +R+ +++ + +V+ LL+ G +T+
Sbjct: 69 ------GPGRPTDYQSSCDRILRILRYPRYIYTAKTLYGDTGELIVEELLQRGEMTMSRT 122
Query: 129 -KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
K + DR + ++G +D + KLV H+++RCP P++ G A+ G
Sbjct: 123 VKTVADRLTQNMEDGQSMDYSEVSSAFCKLVETHFLQRCP-------PVA---GAAKTDG 172
Query: 188 -------SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
++++ + PE+ +P +R + + GE ++N+ +
Sbjct: 173 AAPAAPAAQASASVPTPESFADCY---KVPQVTLRGRGKRRLSGEDGEDQRNA------K 223
Query: 241 KRKHDVLELDECGVA---DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
K K D E+D C + ++ + ++ NFE F R + I V LD ++ ++ M
Sbjct: 224 KAKMDS-EVDFCFIVTTHGDEGIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTM 282
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD 357
L+ S + PLS + I+ + S LD LV + FV + +
Sbjct: 283 LR-MSEVTTPPTASCTKPLSANEIFRSLPGSYNIARPVLDQYLTLLVD-DPMEFVGRAGE 340
Query: 358 S----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
S Y ++ K++ +ES+V +R+G + RIFRLL + R LE ++ D +
Sbjct: 341 SGGGMYVVNLHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIP 399
Query: 414 KKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 471
K+A +LY L + ++++ T A F L+ N+ + +L + NL
Sbjct: 400 AKEAKDMLYMLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLI 459
Query: 472 LRVSYELDREKELL 485
+R +E K LL
Sbjct: 460 VRRLFESKESKRLL 473
>gi|348527048|ref|XP_003451031.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Oreochromis niloticus]
Length = 547
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 120/486 (24%), Positives = 204/486 (41%), Gaps = 36/486 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V KV LL+ G + + T LS + VK +L VL+Q
Sbjct: 12 LLQEHFGEVVEKVGTHLLKSGAQNLRTIIHETGLSVDLVKKSLCVLVQHGATT------- 64
Query: 73 DGFADGPK---ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL- 128
F+ G K + T+Y D IL +R+ +++ + +++ LL+ G T+
Sbjct: 65 --FSSGRKGLGSPTEYHTSCDRILRILRYPRYIYTAKTLYGDTGELIIEELLQRGHTTMS 122
Query: 129 ---KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
K + DR + EG +D + T KLV H+++RCP PL G K
Sbjct: 123 STVKTVADRLTQNMAEGRTMDYTEVSSTFSKLVETHFLQRCP---PL-------PGVGNK 172
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
S + P T V A E+ + +G ++ + E+R
Sbjct: 173 DSSAPIETPATPGTPAAPVNTAPPTPESFPECYKVPSVTLIGRGKRQLASEDGEEQRSAK 232
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 305
++D DE + ++ NFE F R + I V LD ++ ++ ML+ +
Sbjct: 233 RAKMDPETHGDE-GIYWQVNFERFHLHFRDQTIISAVANKLDQTSSEIVRTMLRMSEVTT 291
Query: 306 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----YSI 361
+ T PLS + I+ + S LD LV + FV + +S + +
Sbjct: 292 SPMATCTK-PLSANEIFRSLPPSYNILRPILDQYLTLLVD-DPMEFVGKAGESGGGMFVV 349
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
+ + + +ESVV +R+G + RIFRLL + R LE ++ D + K+A +L
Sbjct: 350 NLHRALANLARATLESVVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMIPAKEAKDML 408
Query: 422 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
Y L + ++++ T A F L+ VN+ + +L + NL R +E
Sbjct: 409 YTLLSQNLVQLQEIPKTPDYAPSRTFYLYTVNQLPTARMLLQNCYKTVANLIERRLFETK 468
Query: 480 REKELL 485
K LL
Sbjct: 469 ESKRLL 474
>gi|355389071|gb|AER62478.1| hypothetical protein [Aegilops speltoides subsp. speltoides]
Length = 252
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 130/257 (50%), Gaps = 14/257 (5%)
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDL-DSLRETLVKLVTAHYVERCPASEPLLM 174
L++GLL++GRLT Q+ R S EG + + +R +LV A YVERCP +EP
Sbjct: 5 LIEGLLQNGRLTFDQLVGRTISKVPEGTIRPAREEIRMNFNRLVYARYVERCPKAEPYFN 64
Query: 175 PISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNS 233
P +E+ AR++ K+A+++ ++EQ+V+ A + RFS + D +
Sbjct: 65 PQEDEQSTGARRRVPKTAEEV---LSLEQKVINTATLSDPERFSEIPYSMEDASKTNDCP 121
Query: 234 NNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA 291
+N G KRKH E+DE E V++R NFE FI L+ K C D + L G
Sbjct: 122 HNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTH 181
Query: 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSF 351
+ + +A + K NSV S++ I E++ + E G M++ ++ L+ +L
Sbjct: 182 PIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDIKPVLL---DLQC 234
Query: 352 VDASSDSYSIDFEKIIE 368
+ + ++ D K++E
Sbjct: 235 TTSDGEEFTFDLRKMVE 251
>gi|336367824|gb|EGN96168.1| hypothetical protein SERLA73DRAFT_94223 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380559|gb|EGO21712.1| hypothetical protein SERLADRAFT_474473 [Serpula lacrymans var.
lacrymans S7.9]
Length = 542
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 134/491 (27%), Positives = 223/491 (45%), Gaps = 60/491 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTT 69
V +I +HFG L A V LL +G L + RYT L V+ A+L+L+QQN + A +
Sbjct: 11 VQIIHSHFGPLTASVASALLTRGRLPLLQLVRYTSLKPRTVRAAVLILVQQNILWHAHSE 70
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL--- 126
E+ + + NT+ L R+RF +F+ Q F + E+VQ +L+HG+L
Sbjct: 71 EEGEVL----EVNTK------ECLMRLRFGRFVWQAEQVFGKAAAEIVQLILDHGKLRPV 120
Query: 127 -TLKQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPA 183
+ Q+ +D SS + L KLVTA Y++ P++ +L S +
Sbjct: 121 DIVAQLSIYDPKSSS----------MYSQALHKLVTASYLK--PST--ILSHNSPRDKRI 166
Query: 184 RKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRK 243
R +G + AK G P E + A A R +G K K + ++
Sbjct: 167 RYEGEEKAKISGFPTAKE---LREAKETAAARLKREEEEAEKIGLKRKPKEQSSNRSNKR 223
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSS 303
V E E V DE V +R NF+ F +R+K V+ + AA V+ A L+AT +
Sbjct: 224 KAVDE--EVFVDDE--VYFRVNFDKFNIHIRNKIIELAVKERFNSSAALVMRAALKATEA 279
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR----ASLVQ--LGELS------- 350
+ + S P S++ I V ++ + + + ASLV+ LG LS
Sbjct: 280 KQVSSASVRSDPTSIAGISMHVDDADDLASGLVTSSKKAPVASLVKNYLGLLSSADNPTP 339
Query: 351 ------FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 404
FV S + ++F+ + + + +E+V +R+G D RI RLL +G++ E
Sbjct: 340 SGQAAAFVSLSDNKVHVEFDVVNKRLRRRVLEAVTRERHGDDGVRILRLLLDTGKMDEK- 398
Query: 405 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDE 462
++S + KDA +L L D + ++++ + R F LW V+ + +L
Sbjct: 399 QVSKVAMMANKDARPLLSALSTDSLISIQEVPKSADRNPTRTFYLWFVDLPKAYSVLLGS 458
Query: 463 MFHAALNLSLR 473
++ N+S+R
Sbjct: 459 LYKTLYNISMR 469
>gi|302835680|ref|XP_002949401.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
gi|300265228|gb|EFJ49420.1| hypothetical protein VOLCADRAFT_89829 [Volvox carteri f.
nagariensis]
Length = 634
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 23/297 (7%)
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A+ V++R N + F R RH+ + +R D+ AA V++AML E VK +
Sbjct: 339 AAAEPPVVLWRVNNDEFNRVFRHQAMVGLIREKFDEDAAAVVTAMLATARPHEASVKEER 398
Query: 313 SVPLSLSSIYEEVIK-SEAG--RNMTLDHVRASLVQLGELSFVDAS--------SDSYSI 361
SVPLS I V + + AG + V A L L F S S Y I
Sbjct: 399 SVPLSEGEIETTVGRLTTAGVLEALPQQPVSAVLRTLASDPFEMFSLAATGMQGSPMYVI 458
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
+ +++I++ +++E+VV RY R+FRLL+ G+ LE +I+D + +KD ++L
Sbjct: 459 NSQRVIDLIMLKQIEAVVKSRYDIAGLRVFRLLALRGQ-LEQKQIADLAMLPQKDTRELL 517
Query: 422 YKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
Y++ G++L++ + + R F W+V+ + + ++F A + R+ +E++
Sbjct: 518 YRMLAGGFVLLQDIPKSADRAPSRSFYTWRVSVTAICEATAGQLFRATGRVHQRLKFEME 577
Query: 480 REKELLNLPADKR---------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+EKELL L + T + NR++++ ++E+S LD+ I +F+DF
Sbjct: 578 KEKELLGLLESAKEAKTVNFTLTTAQRQAVNRLKRMSEVMETSLQHLDEMIAVFNDF 634
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 7/212 (3%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNC 63
++ A+ ++ +GD V V + L KG L + R T LS VK ALL+LIQQNC
Sbjct: 6 QFACDLAIRLVQEQYGDAVGGVFKYLAAKGQLPLGEIIRGTGLSASLVKQALLILIQQNC 65
Query: 64 VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEH 123
V + + F + Y +L +R ++FL + E + +V LL+
Sbjct: 66 VSVYLQPGEESFRGARPSFHVYECDLGRVLQIIRHSRFLLHIRDEAGEVAEHIVAQLLQD 125
Query: 124 GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP---ASEPLLMP----I 176
GRL + Q+ + + D++R T + LV AHYVER P A P + P +
Sbjct: 126 GRLRMDQVLGGVAARMGKAQEEVADTIRNTFISLVQAHYVERAPLCNAPPPTIRPHPNSV 185
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 208
+ PA + +A++ T+E+ +E A
Sbjct: 186 KARKKPAGGGEAFAAEQGAASRTLEELAIEKA 217
>gi|348587154|ref|XP_003479333.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Cavia
porcellus]
Length = 534
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 217/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L++ G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIKTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +RF +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRFPRYIYTTKALYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L +V+RCP + P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTDTMEDGKTMDYAEVSNTFVQLADTRFVQRCPM---VHAPEN 168
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ GP P VV + S++ G++ ++S+
Sbjct: 169 SDTGP--------------PPPAPSLVVNEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++ N + F + R + ++ V +D ++ ++ A
Sbjct: 210 AGEPKAKKPKRTTDNKEPTPDDGIYWQTNLDRFHQHFRDQAIVNAVANRMDQTSSEIVRA 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + +V T + P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+F K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINFHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSV 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 TNLIERRQFETKENKRLL 461
>gi|402855948|ref|XP_003892570.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Papio anubis]
Length = 545
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 394
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|402855946|ref|XP_003892569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Papio anubis]
Length = 534
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGQ-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|355558345|gb|EHH15125.1| hypothetical protein EGK_01174 [Macaca mulatta]
gi|355745608|gb|EHH50233.1| hypothetical protein EGM_01026 [Macaca fascicularis]
gi|380808874|gb|AFE76312.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|383413173|gb|AFH29800.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
gi|384944846|gb|AFI36028.1| DNA-directed RNA polymerase III subunit RPC3 [Macaca mulatta]
Length = 534
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 118/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|410171279|ref|XP_003960210.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 2 [Homo sapiens]
Length = 547
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 337
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 396
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 456
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|332809810|ref|XP_513732.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 6
[Pan troglodytes]
Length = 545
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 394
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|332237890|ref|XP_003268140.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Nomascus leucogenys]
Length = 534
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 217/487 (44%), Gaps = 51/487 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ I E + +P + S++ G++ ++S+ GE K K
Sbjct: 178 PTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDAAGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
+ T +S P + E+ +S G N++ + L L + L FV S DS Y
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 421 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSIANLIERRQFET 454
Query: 479 DREKELL 485
K LL
Sbjct: 455 KENKRLL 461
>gi|4753153|emb|CAB41919.1| RNA polymerase III subunit [Homo sapiens]
Length = 534
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|21359969|ref|NP_006459.3| DNA-directed RNA polymerase III subunit RPC3 [Homo sapiens]
gi|114558425|ref|XP_001161607.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 5
[Pan troglodytes]
gi|410171277|ref|XP_003960209.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 1 [Homo sapiens]
gi|60393871|sp|Q9BUI4.1|RPC3_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C; AltName:
Full=RNA polymerase III 62 kDa subunit; Short=RPC62
gi|325053851|pdb|2XUB|A Chain A, Human Rpc62 Subunit Structure
gi|325053852|pdb|2XV4|S Chain S, Structure Of Human Rpc62 (Partial)
gi|12803519|gb|AAH02586.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Homo
sapiens]
gi|20159753|gb|AAM12033.1| RNA polymerase III subunit RPC62 [Homo sapiens]
gi|119591841|gb|EAW71435.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|119591842|gb|EAW71436.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_b [Homo sapiens]
gi|208967092|dbj|BAG73560.1| polymerase (RNA) III (DNA directed) polypeptide C [synthetic
construct]
gi|410225476|gb|JAA09957.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410258100|gb|JAA17017.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410290358|gb|JAA23779.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
gi|410349833|gb|JAA41520.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Pan
troglodytes]
Length = 534
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|332237888|ref|XP_003268139.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Nomascus leucogenys]
Length = 555
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 22 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 81
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 82 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 132
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 133 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 187
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 188 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 230
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 231 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 290
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 291 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 345
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 346 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 404
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 405 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNTLSAARMLLHRCYKSI 464
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 465 ANLIERRQFETKENKRLL 482
>gi|73981410|ref|XP_540277.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Canis
lupus familiaris]
Length = 534
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/501 (22%), Positives = 220/501 (43%), Gaps = 57/501 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP +P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----WVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKR----KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE + KH+ D + + ++AN + F + R + + V +D ++ +
Sbjct: 210 AGEPKAKRPKHNT---DNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEI 266
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LS 350
+ ML+ + ++ T ++ P + E+ +S G N++ + L L + L
Sbjct: 267 VRTMLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 321
Query: 351 FVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 406
FV S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 322 FVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQV 380
Query: 407 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 464
D + K+A +LYK+ ++ ++++ T A F L+ VN + +L +
Sbjct: 381 EDFAMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCY 440
Query: 465 HAALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 441 KSIANLIERRQFETKENKRLL 461
>gi|296228565|ref|XP_002759865.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Callithrix jacchus]
Length = 534
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 220/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N+ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|198278473|ref|NP_083201.1| DNA-directed RNA polymerase III subunit RPC3 [Mus musculus]
gi|51703312|sp|Q9D483.1|RPC3_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|12855605|dbj|BAB30395.1| unnamed protein product [Mus musculus]
gi|148706970|gb|EDL38917.1| mCG14870 [Mus musculus]
gi|187956591|gb|AAI51029.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
gi|223462077|gb|AAI47486.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 533
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/497 (21%), Positives = 217/497 (43%), Gaps = 50/497 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVLYHVHK---------RGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ + G P V+ + S++ G++ ++S+
Sbjct: 167 D------------SSDRGPPPPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D + + + ++ N + F + R + + V +D ++ ++ M
Sbjct: 210 TGEPKAKKPRYTDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 269
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDA 354
L+ + ++ T +S P + E+ +S G N++ + L L + L F+
Sbjct: 270 LRMS-----EITTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGK 324
Query: 355 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
S DS + I+ K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 SGDSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 383
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 468
+ K+A +LYK+ + ++L++++ T A F L+ VN + +L + +
Sbjct: 384 MIPAKEAKDMLYKMLSENFILLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIA 443
Query: 469 NLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 NLIERRQFETKENKRLL 460
>gi|296228563|ref|XP_002759864.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Callithrix jacchus]
Length = 547
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 220/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N+ + L L + L FV
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNIAKQVLDQYLTLLADDPLQFVG 337
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 396
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 456
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|297663832|ref|XP_002810369.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pongo abelii]
Length = 534
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 219/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIADDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRILRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+LV H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLVDTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + V+ + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|397469197|ref|XP_003806248.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Pan paniscus]
Length = 545
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + +++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 335
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 394
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|397469195|ref|XP_003806247.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Pan paniscus]
Length = 534
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + +++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLTLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|297818094|ref|XP_002876930.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322768|gb|EFH53189.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 288
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 36/297 (12%)
Query: 149 SLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAA 208
S++E+L KLV AH+VER P+ +P S R++G+ ++++V++ A
Sbjct: 15 SVKESLKKLVAAHFVERSPSLDP-----SFGRDLPRRRGATYPLFFDNLIVLKKKVLQTA 69
Query: 209 LPMEAMRF--SVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANF 266
P E +RF + N +S++ ++ KRK DV D + + +R NF
Sbjct: 70 -PAEDIRFPLTAFANTDSNIAKR-----------KRKPDVDASDPSKL-----ITWRPNF 112
Query: 267 EGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVI 326
E FI RLRHK C+D V+ + + VL AML SAE+KV+ S +S+ S +EV
Sbjct: 113 EEFISRLRHKACLDIVKKNKGEECVAVLRAMLN-VKSAEEKVEKGQSGRMSVGSFSKEV- 170
Query: 327 KSEAGRNMTLDHVRASLVQLGEL---------SFVDASSDSYSIDFEKIIEIAQNEEVES 377
K+E G + + V L +L +FV SY +DFE II + + E+++
Sbjct: 171 KTEDGHPLLQEIVVECLGKLSSSSSSSSSSLPAFVIEMDGSYRVDFESIISVPRYHEMKA 230
Query: 378 VVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433
V + YG + ++F LL K L ET +I +E++ A + L+ + K GY+ ME
Sbjct: 231 AVKRTYGEEFSQMFNYLLEKEDCLFETSEIVGAVEIEEEAALRGLFDMRKGGYVRME 287
>gi|426331118|ref|XP_004026542.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 2
[Gorilla gorilla gorilla]
Length = 547
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q
Sbjct: 14 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQH 73
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 74 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 124
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 125 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 179
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 180 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 222
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 223 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 282
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 283 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 337
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 338 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 396
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ V + +L + +
Sbjct: 397 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSI 456
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 457 ANLIERRQFETKENKRLL 474
>gi|355712759|gb|AES04456.1| polymerase III polypeptide C [Mustela putorius furo]
Length = 533
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T ++L H+V+RCP +P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----WVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + P + + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPLPPA--------PILVISEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 TGEPKAKRSKHSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSAAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|426331116|ref|XP_004026541.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 isoform 1
[Gorilla gorilla gorilla]
Length = 534
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 221/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQSLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ V + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVTILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|338725136|ref|XP_001499327.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Equus
caballus]
Length = 534
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/487 (23%), Positives = 214/487 (43%), Gaps = 51/487 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLIQ N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----FVPATENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDATGEPKAKRPKH 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R +G + V +D ++ ++ ML+ + +
Sbjct: 221 TADNKEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
+ T ++ P + E+ +S G N++ + L L + L FV S DS Y
Sbjct: 276 ITTPSNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 336 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 394
Query: 421 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 479 DREKELL 485
K LL
Sbjct: 455 KENKRLL 461
>gi|297279785|ref|XP_002808279.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Macaca mulatta]
Length = 545
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 117/498 (23%), Positives = 220/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 12 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 71
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 72 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 122
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 123 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 177
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 178 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 220
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 221 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 280
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G ++ + L L + L FV
Sbjct: 281 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYXISKQVLDQYLTLLADDPLEFVG 335
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 336 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 394
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 395 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 454
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 455 ANLIERRQFETKENKRLL 472
>gi|395535853|ref|XP_003769935.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Sarcophilus harrisii]
Length = 535
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/500 (23%), Positives = 219/500 (43%), Gaps = 54/500 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGSQPLRAIVHGTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQIHKRGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T +L H+V+RCP L+P
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSSTFCRLADTHFVQRCP-----LVPDP 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E A+ I E + +P + +++ G++ ++S++
Sbjct: 167 PESAEAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDA 210
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E D + ++AN + F + R + ++ V +D ++ ++
Sbjct: 211 AGEPRPKRPKQTAESKEPMPDD--GIYWQANLDRFHQHFRDQSIVNAVANRMDQTSSEIV 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSF 351
ML+ + ++ T + P + E+ +S G N++ + L L + L F
Sbjct: 269 RTMLRMS-----EITTSSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 323
Query: 352 VDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 407
V S DS Y I+ K + +ES+V +R+G RIFRL+ + + LE ++
Sbjct: 324 VGKSGDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVE 382
Query: 408 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 465
D + K+A +LYKL + + ++++ T A F L+ VN + +L +
Sbjct: 383 DFAMIPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYK 442
Query: 466 AALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 443 SIANLIERRQFETRENKRLL 462
>gi|335775071|gb|AEH58449.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 508
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRCVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPFV-------- 163
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
PA + I ++ + +P + S++ G++ ++S+
Sbjct: 164 ----PANENSDPGPPPPAPTLVINEKDM-YLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R +G + V +D ++ ++
Sbjct: 210 TGEPKAKRPKHTADNKEPIPDDGIYWQANLDRFHQHFRDQGIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSNAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|62898387|dbj|BAD97133.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) variant
[Homo sapiens]
Length = 534
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 116/498 (23%), Positives = 220/498 (44%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVRLIRTGSQPLRVIAHDTGTSLDQVKKALCVLAQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T V+L H+V+RCP+ +P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + +E ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLEK-KHIEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|410171281|ref|XP_003960211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 3 [Homo sapiens]
Length = 484
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 110/484 (22%), Positives = 212/484 (43%), Gaps = 51/484 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
+ T +S P + E+ +S G N++ + L L + L FV S DS Y
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 421 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
LYK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 LYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFET 454
Query: 479 DREK 482
K
Sbjct: 455 KENK 458
>gi|444728584|gb|ELW69034.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 1120
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 210/483 (43%), Gaps = 51/483 (10%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
HFG++V K+ L+R G + + T S +QVK AL VLIQ N V +
Sbjct: 602 HFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHNLVI---------YQ 652
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL----KQMF 132
+Y +L +R+ +++ + +V+ LL +G++T+ K++
Sbjct: 653 VHKCGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVT 712
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
DR + ++ +D + T V+L H+V+RCP L+P +E+
Sbjct: 713 DRLTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LVPATEK------------S 755
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVLELDE 251
+ G P V+ E + V T G++ ++S GE K K D
Sbjct: 756 ESGPPPPAPTLVI-----TEKDMYLVPTLSLIGKGKRRRSSEEDAAGEPKAKRPKHSTDN 810
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 311
+ + ++AN + F + R + + V +D ++ ++ ML+ + ++ T
Sbjct: 811 KEPTPDDGIYWQANLDRFRQHFRDQAIMSAVANRMDQTSSEIVRTMLRMS-----EITTP 865
Query: 312 NSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFE 364
+S P +L E+ +S G N++ + L L + L FV S DS Y I
Sbjct: 866 SSAPFTLPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVISLH 925
Query: 365 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKL 424
K + +ESVV +R+G RIF L+ + + LE ++ D + K+A +LYK+
Sbjct: 926 KALASLATATLESVVQERFGSRCARIFCLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKM 984
Query: 425 WKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 482
+ ++ ++++ T A F L+ VN + + +L + + NL R +E K
Sbjct: 985 LSENFMSLQEIPKTPDHAPSRTFYLYIVNVLSVARMLLHRCYKSIANLIERRQFEARENK 1044
Query: 483 ELL 485
LL
Sbjct: 1045 RLL 1047
>gi|410968182|ref|XP_003990588.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Felis
catus]
Length = 534
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 115/498 (23%), Positives = 218/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP +P++
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYSEVSNTFVRLADTHFVQRCP-----WVPVT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E I E + +P + S++ G++ ++S+
Sbjct: 167 ENSD-PGPPPPAPILVISEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHGTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|395842050|ref|XP_003793833.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Otolemur
garnettii]
Length = 534
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 216/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLKVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLQMLRYPRYIYTTKTLYSDPGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T +L H+V+RCP L+P +
Sbjct: 112 LNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFARLADTHFVQRCP-----LVPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ P + + V+ + S++ G++ ++S+
Sbjct: 167 DNSDPGPPPPAPTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T + P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|431896577|gb|ELK05989.1| DNA-directed RNA polymerase III subunit RPC3 [Pteropus alecto]
Length = 577
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/487 (23%), Positives = 217/487 (44%), Gaps = 51/487 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + + T S +QVK AL VLIQ N V
Sbjct: 56 LLQEHFGEIVEKIGVHLIRNGSQSLRVIAHDTGTSLDQVKKALCVLIQHNLVI------- 108
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ I + +V+ LL +G++T+
Sbjct: 109 --YQVHKRGVVEYEAQCSRVLRMLRYPRYIYIAKTLYSDTGELIVEELLLNGKMTMSAVV 166
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T ++L H+V+RCP ++P +E P +
Sbjct: 167 KKVADRLTETMEDGKTMDYAEVSNTFMRLADTHFVQRCP-----MVPATENSDPGPPPPA 221
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ I E + +P + S++ G++ ++S + GE K K
Sbjct: 222 PTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEDDATGEPKAKRPKH 264
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 265 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRVS-----E 319
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
V T + P + E+ +S G N+ + L L + L FV S DS Y
Sbjct: 320 VTTPSGAPFTQPLSSHEIFRSLPVGYNIAKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 379
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + +ESVV +R+G RIFRL+ + + LE ++ D + K+A +
Sbjct: 380 INLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDM 438
Query: 421 LYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
LYK+ + ++ ++++ T A F L+ V+ + +L + + NL R +E
Sbjct: 439 LYKMLSENFISLQEIPKTPDHAPSRTFYLYTVSILSAARMLLHRCYKSIANLIERRQFET 498
Query: 479 DREKELL 485
K LL
Sbjct: 499 KENKRLL 505
>gi|301778375|ref|XP_002924602.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Ailuropoda melanoleuca]
Length = 534
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 216/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV-------- 163
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
PA + I ++ + +P + S++ G++ ++S+
Sbjct: 164 ----PATENSDPGPPPPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|390345722|ref|XP_799017.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Strongylocentrotus purpuratus]
Length = 532
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/489 (22%), Positives = 207/489 (42%), Gaps = 58/489 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V K+C LL+ G ++V + EQVK AL VLIQ N V+
Sbjct: 12 LVQEHFGDVVEKICTHLLKNGSNNFRSVVSTVKEKPEQVKKALCVLIQHNIVK------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ + +Y + L VR+ +++ + +V+ +L HG + + +
Sbjct: 65 --YGLNKRGMVEYTADVEKALLLVRYPRYIYSAKTLYGDIGELIVEEVLHHGEILMSNVV 122
Query: 133 DRAKSSEKE---GNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
++ K KE GN ++ ++++ + LV H+++R P S
Sbjct: 123 EKVKVRLKEAMEGNQLEPSAIKDKFIDLVNTHFLQRLP--------------------SW 162
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
SA E E+ V +P ++ + + + G K + G +
Sbjct: 163 SA------EDDEESKVIPLIPHLSVSDADLYRIPETAGVTGKRKRPLNDGGRSSKRARSS 216
Query: 250 DECGVADEQ-----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D++ + ++ NFE F R R + I + +D A +V++ ML+ S
Sbjct: 217 SVGSEPDQEVPLDDGIYWKVNFERFHRYFRDQDIISAITQRIDKSAGDVVATMLR-MSEL 275
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT------LDHVRASLVQLGELSFVDASSDS 358
+ + PLS I ++ K R + LD + + G DA
Sbjct: 276 TTDFMARETKPLSFHDIARQMPKKLENRQLEQYMKLLLDDQTMIVKKYG-----DAGGGM 330
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y ID E+ + +ESVV +R+G ++RIF+ L K + LE +I + + K+A
Sbjct: 331 YEIDLEQASRVICTANIESVVQERFGSKSFRIFKTLLKK-KYLEQKQIENFALIPAKEAK 389
Query: 419 KILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+++Y+++ + ++ ++++ T A F L+ V + + + + + +NL R +
Sbjct: 390 ELVYQMFAENFITVQEIPRTPDHAPSRTFYLFTVELGQVTFMLAERCYKSLINLMTRRHF 449
Query: 477 ELDREKELL 485
E K L+
Sbjct: 450 ESAENKRLI 458
>gi|281353327|gb|EFB28911.1| hypothetical protein PANDA_013978 [Ailuropoda melanoleuca]
Length = 533
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/498 (22%), Positives = 216/498 (43%), Gaps = 51/498 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRAIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPWV-------- 163
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
PA + I ++ + +P + S++ G++ ++S+
Sbjct: 164 ----PATENSDPGPPPPAPILVISEKDM-YLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
GE K K D + + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRPKHSTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRT 269
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVD 353
ML+ + ++ T ++ P + E+ +S G N++ + L L + L FV
Sbjct: 270 MLRMS-----EITTPSTAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVG 324
Query: 354 ASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++ D
Sbjct: 325 KSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDF 383
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+ K+A +LYK+ ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 AMIPAKEAKDMLYKMLSGNFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443
Query: 468 LNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 ANLIERRQFETKENKRLL 461
>gi|344306663|ref|XP_003422005.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Loxodonta africana]
Length = 534
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 119/500 (23%), Positives = 222/500 (44%), Gaps = 55/500 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQVHKRGVVEYEAQCSRVLRMLRYPRYIYTSKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCP-----LVPAT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S
Sbjct: 167 ENSDPGPPPPAPTL-VINEKDMY-------LVP----KLSLIGK-----GKRRRSSEEDA 209
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E + D+ + ++AN + F + R + + V +D ++ ++
Sbjct: 210 AGEPKAKRLKHTTENKE-PIPDD-GIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEIV 267
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSF 351
ML+ + ++ T + P + E+ +S G N++ + L L + L F
Sbjct: 268 RTMLRMS-----EITTPSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 322
Query: 352 VDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 407
V S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 323 VGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVE 381
Query: 408 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 465
D + K+A +LYK+ + ++ ++++ T A F L+ VN + +L +
Sbjct: 382 DFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYK 441
Query: 466 AALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 442 SIANLIERRQFETKENKRLL 461
>gi|148234765|ref|NP_001086474.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Xenopus
laevis]
gi|49670421|gb|AAH75179.1| Polr3c-prov protein [Xenopus laevis]
Length = 529
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 115/488 (23%), Positives = 213/488 (43%), Gaps = 58/488 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++VA+V L+R G + + T S +QVK AL VLIQ N V ++
Sbjct: 12 LLEEHYGEIVARVGTFLIRTGNQPLRVIVNETGTSLDQVKKALCVLIQHNLVTYQLNKR- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GF + Y D LH +R+ +++ + +V+ L +G++TL
Sbjct: 71 -GFVE-------YRAHCDRFLHILRYPRYIYTAKTLYGDTGELIVEELQLNGKMTLSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++ ++ + T L H+V+RCP G K +
Sbjct: 123 KKVADRLTETMEDSKSMEYSEVSATFTHLADTHFVQRCP-------------GLQEKDAT 169
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVL 247
+ G P + L M+ ++ V + G++ ++S++ G + K
Sbjct: 170 E-----GRPP------LAPTLQMDEKEMYIIPKVNLTGRGKRRRSSDDDDGGSQAKR--- 215
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
+ + V+ + + ++ N E F + R + I V +D ++ ++ ML+ + +
Sbjct: 216 QKKDTEVSQDDGIYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMS-----E 270
Query: 308 VKTKNSV----PLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----Y 359
V T +S PLS + I+ + LD +L+ L +V S DS +
Sbjct: 271 VTTSSSAAYTQPLSSNEIFRSLPTGYNVSKQVLDQY-LTLLADDPLEYVGRSGDSGGGMF 329
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
I+ K + +ES+V +R+G + RIFRLL + R LE ++ D V K+A +
Sbjct: 330 VINLHKAVASLATATLESLVQERFGSRSARIFRLLLRK-RHLEQKQVEDLAMVPAKEAKE 388
Query: 420 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
+LYK+ + ++++ T A F L+ VN + +L + NL R ++
Sbjct: 389 MLYKMLSQNLVSLQEIPKTPDHAPSRTFYLYTVNTLPCARMLLQRCYKTVANLIERRQFD 448
Query: 478 LDREKELL 485
K LL
Sbjct: 449 TKENKRLL 456
>gi|351703764|gb|EHB06683.1| DNA-directed RNA polymerase III subunit RPC3 [Heterocephalus
glaber]
Length = 534
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 114/501 (22%), Positives = 217/501 (43%), Gaps = 57/501 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLMLQEHFGEIVEKIGVHLIRTGSQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAHCSRVLRMLRYPRYIYTTKALYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T ++L +V+RCP + P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETVEDGKTMDYAEVSNTFMQLADTRFVQRCPM---VHAPEN 168
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ P P V+ + S++ G++ ++S+
Sbjct: 169 SDTQP--------------PPPAPNLVINEKDMYLVPKLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGE----KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE + KH D + + ++AN + F + R + + V +D ++ +
Sbjct: 210 AGEPAAKRPKHPT---DNKEPIPDDGIYWQANLDRFHQHFRDQTIVSAVANRMDQTSSEI 266
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LS 350
+ AML+ + +V T + P + E+ +S G N++ + L L + L
Sbjct: 267 VRAMLRMS-----EVTTSSDAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 321
Query: 351 FVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 406
FV S DS Y I+F K + +ESV+ +R+G RIFRL+ + + LE ++
Sbjct: 322 FVGKSGDSGGGMYVINFCKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQV 380
Query: 407 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 464
D + K+A +LYK+ + ++ ++++ T A F L+ VN + +L +
Sbjct: 381 EDFAMIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCY 440
Query: 465 HAALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 441 KSVTNLIERRQFETKENKRLL 461
>gi|443690865|gb|ELT92883.1| hypothetical protein CAPTEDRAFT_158707 [Capitella teleta]
Length = 525
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 109/491 (22%), Positives = 218/491 (44%), Gaps = 65/491 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++ K+ LLRKG + + + + ++VK L LIQ V
Sbjct: 12 ILREHFGEVAEKIVNYLLRKGSTSLKPLTTECGFTLDKVKRCLAALIQHGIV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F+ +Y DN+L + F +++ F + +++ LL G+LT+
Sbjct: 64 -TFSQHKAGFVEYFASVDNVLSYLFFPQYINCAKTLFGDESELIIEELLHQGQLTMSGTI 122
Query: 133 DR-------AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+R A+SS+ D+ +R+ V L+ +V++CP LL P S+ PA
Sbjct: 123 NRVTQRLAQAESSQ------DVYGVRDKFVDLIKTQFVKQCP----LLTPDSKARSPAFA 172
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
+ +++ P +A V ++ V K K S++ RK
Sbjct: 173 EDTEN-------------------PEQAFTVPQV-DLAGLVKRKRKISDDENEDHARKKR 212
Query: 246 VLE---LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT- 301
LE ++CG ++ + + N F + LR + + V +D A +++ L+ +
Sbjct: 213 KLENSAAEKCG---DEGIYWTINHARFQQYLRDQAIVTAVSRKVDVRAGEIIACFLRISE 269
Query: 302 -SSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS-- 358
+A + + T ++ + I++ + K LD +V+ F+ + DS
Sbjct: 270 MKTASESISTN---AITYNEIFQSLPKEMGITRQILDQYLRIIVEDAS-DFLQKTGDSGG 325
Query: 359 --YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
++I+F++ + V+SV+ ++YG R++RLL+ G LE +I + + K+
Sbjct: 326 GMFAINFQRAFKHLCQAHVQSVIGEKYGSKCLRVYRLLAMKGH-LEQKQIEEMAMIPAKE 384
Query: 417 APKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
A ++LY L+ + + ++++ T A F L+ + + + +L + A LN+ LR
Sbjct: 385 AKEMLYSLFDEQLVTIKEVPKTPDHAPSRTFYLFGIQLNQVARMLLQKTTKAMLNVCLRR 444
Query: 475 SYELDREKELL 485
++E + + LL
Sbjct: 445 AHETQQHRRLL 455
>gi|355389039|gb|AER62462.1| hypothetical protein [Agropyron mongolicum]
Length = 214
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 12/224 (5%)
Query: 165 RCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES 224
RCP +EP P +E PAR + K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFDPREDESTPARXRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSME 57
Query: 225 DVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHV 282
D + ++ G KRKH E+DE E V++R NFE FI L+ K C D
Sbjct: 58 DASKTNDCPHSAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRK 117
Query: 283 RAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRAS 342
+ L G + + +A + K NSV SL+ I E++ + E G M++ ++
Sbjct: 118 KPKLKVGTHPIWESFFEANLTD----KDTNSVTSSLNGILEKLGQKEGGAAMSIGDIKPV 173
Query: 343 LVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 386
L +L + + ++ D K++E +NEE+ES+V K+YG++
Sbjct: 174 L---QDLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 214
>gi|126313694|ref|XP_001368997.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3
[Monodelphis domestica]
Length = 535
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/500 (23%), Positives = 219/500 (43%), Gaps = 54/500 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVDKIGTHLIRTGGQPLRVIVHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 NLVT---------YQIHKRGIVEYEAHCSRILRILRYPRYIYTAKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + T +L H+V+RCP +P
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYSEVSSTFGRLADTHFVQRCP-----FVPDP 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ A+ I E + +P + +++ G++ ++S++
Sbjct: 167 TDSADAQPPPPAPTLSINEKDMY-------LVP----KLNLIGK-----GKRRRSSDDDA 210
Query: 238 PGE---KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
GE KR E E + D+ + ++AN + F + R + + V +D ++ ++
Sbjct: 211 AGEPKPKRPKQTAESKE-PIPDD-GIYWQANLDRFHQHFRDQSIVSAVANRMDQTSSEIV 268
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSF 351
ML+ + ++ T + P + E+ +S G N++ + L L + L F
Sbjct: 269 RTMLRMS-----EITTSSCAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 323
Query: 352 VDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKIS 407
V S DS Y I+ K + +ES+V +R+G RIFRL+ + + LE ++
Sbjct: 324 VGKSGDSGGGMYVINLHKALASLAMATLESIVQERFGSRCARIFRLVLRK-KHLEQKQVE 382
Query: 408 DTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFH 465
D + K+A +LYKL + + ++++ T A F L+ VN + +L +
Sbjct: 383 DFAMIPAKEAKDMLYKLLSENLISLQEIPKTPDHAPSRTFYLYTVNSLSAARMLLRRCYK 442
Query: 466 AALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 443 SIANLIERRQFETKENKRLL 462
>gi|354472867|ref|XP_003498658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Cricetulus
griseus]
gi|344238652|gb|EGV94755.1| DNA-directed RNA polymerase III subunit RPC3 [Cricetulus griseus]
Length = 533
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 106/486 (21%), Positives = 209/486 (43%), Gaps = 50/486 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VLI N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIHHNLVI------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ ++ +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YRVHKRSVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + V+L H+V+RCP L+P + G
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPAT---------GD 168
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLE 248
T+ V+ + S++ G++ ++S+ GE +
Sbjct: 169 SDPGPPPPAPTL---VINEKDMYLVPKLSLIGK-----GKRRRSSDEDASGEPKAKKPKH 220
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
D + + ++ N + F + R + + V +D ++ ++ ML+ + ++
Sbjct: 221 TDNKEPIPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EI 275
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGR-NMTLDHVRASLVQLGE--LSFVDASSDS----YSI 361
T + P + E+ +S G N++ + L L + L F+ S DS Y I
Sbjct: 276 TTPSGAPFTQPLSSNEIFRSLPGSYNISKQVLDQYLTLLADDPLEFIGKSGDSGGGMYVI 335
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
+ K + +ESV+ +R+G RIFRL+ + + LE ++ D + K+A +L
Sbjct: 336 NLHKALASLATATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDML 394
Query: 422 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
YK+ + ++ ++++ T A F L+ VN + +L + + NL R +E
Sbjct: 395 YKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLIERRQFETK 454
Query: 480 REKELL 485
K LL
Sbjct: 455 ENKRLL 460
>gi|444708696|gb|ELW49743.1| DNA-directed RNA polymerase III subunit RPC3 [Tupaia chinensis]
Length = 628
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/501 (22%), Positives = 213/501 (42%), Gaps = 63/501 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNV-----KRYTELSDE-------QVKNALLVL 58
++ + D + E LL G +T V R TE ++ +VK AL VL
Sbjct: 92 IYTTKTLYSDTGELIVEELLLNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVL 151
Query: 59 IQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
IQ N V + + +Y +L +R+ +++ + +V+
Sbjct: 152 IQHNLVI---------YQVHKRGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVE 202
Query: 119 GLLEHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLM 174
LL +G++T+ K++ DR + ++ +D + T V+L H+V+RCP L+
Sbjct: 203 ELLLNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVSNTFVRLADTHFVQRCP-----LV 257
Query: 175 PISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN 234
P +E+ P G P V+ + S++ G++ ++S
Sbjct: 258 PATEKSEP------------GPPLPAPTLVINEKDMYLVPKLSLIGK-----GKRRRSSE 300
Query: 235 NVTPGE-KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
GE K K D + + ++AN + F + R + + V +D ++ +
Sbjct: 301 EDAAGEPKAKRPKHSTDNKEPTPDDGIYWQANLDRFRQHFRDQAIVSAVANRMDQTSSEI 360
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LS 350
+ ML+ + ++ T +S P +L E+ +S G N++ + L L + L
Sbjct: 361 VRTMLRMS-----EITTPSSAPFTLPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLE 415
Query: 351 FVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 406
FV S DS Y I+ K + +ESVV +R+G RIFRL+ + + LE ++
Sbjct: 416 FVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHLEQKQV 474
Query: 407 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMF 464
D + K+A +LYK+ + ++ ++++ T A F L+ VN + + +L +
Sbjct: 475 EDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNVLSVARMLLHRCY 534
Query: 465 HAALNLSLRVSYELDREKELL 485
+ NL R +E K LL
Sbjct: 535 KSIANLIERRQFETRENKRLL 555
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 13/166 (7%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YQVHKRGVVEYEAQCGRMLRMLRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
+G++T+ K++ DR + ++ +D +++ L L+ + V
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDSKTMDYAEVKKALCVLIQHNLV 157
>gi|355389073|gb|AER62479.1| hypothetical protein [Aegilops speltoides var. ligustica]
Length = 218
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 163 VERCPASEPLLMPISEEEGP-ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTN 221
VERCP +EP P + + AR+ K+A+++ ++EQ+VV A + RF +
Sbjct: 1 VERCPKAEPYFNPQEDXQSTGARRXVPKTAEEVL---SLEQKVVNTATLSDPERFFEIPY 57
Query: 222 VESDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCI 279
+ D + +N G KRKH E+DE E V++R NFE FI L+ K C
Sbjct: 58 IMEDASKTNDCPHNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCA 117
Query: 280 DHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHV 339
D + L G + + +A + K NSV S++ I E++ + E G M++ +
Sbjct: 118 DRKKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGILEKLGQKEGGAAMSIGDI 173
Query: 340 RASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDA 387
+ L+ +L + + ++ D K++E +NEE+ES V K+YG++A
Sbjct: 174 KPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESXVKKKYGQEA 218
>gi|410905693|ref|XP_003966326.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Takifugu rubripes]
Length = 536
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 114/489 (23%), Positives = 203/489 (41%), Gaps = 52/489 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ LLR G + + T + + VK L VL+Q N V F
Sbjct: 12 LLREHFGEVVEKLGTHLLRSGSQNLRTILHETGMPRDLVKKVLCVLVQ-NGVCVFNHR-- 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GP T Y + IL +R+ +++ + +++ LL+ G +T+
Sbjct: 69 -----GPGRPTNYQANSNKILRILRYPRYIYTAKTLYGDTGELIIEELLQRGEMTMSRTV 123
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K + DR + ++G +D + KLV H+++RCP P+ + +
Sbjct: 124 KTVADRLTQNMEDGQCMDYSEVSSAFCKLVETHFLQRCP---PVAGAGKADSAAPATPAT 180
Query: 189 KSAKKIGEPETIEQ--QVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
++ PE+ +V + + + R +V+ + +K K
Sbjct: 181 QAGASAPTPESFPDCYRVPQVTIRGQGKRRLSSEDVDQTIAKKAK--------------- 225
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ----ATS 302
+D DE + ++ NFE F R + I V LD ++ ++ ML+ TS
Sbjct: 226 --MDPETHGDE-GIYWQVNFERFHLHFRDQAIISAVANKLDQTSSEIVRTMLRMSEVTTS 282
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS---- 358
A K PLS + I+ + + LD LV + FV + +S
Sbjct: 283 PAASCTK-----PLSANEIFRSLPSTYNIARPILDQYLTLLVD-DPMEFVGRAGESGGGM 336
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+ ++ K++ +ES+V +R+G + RIFRLL + R LE ++ D V K+A
Sbjct: 337 FVVNLHKVLANLARATLESIVQERFGSRSARIFRLLLRK-RHLEQKQVEDFAMVPAKEAK 395
Query: 419 KILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+LY L + ++++ T A F L+ N+ + +L + NL R +
Sbjct: 396 DMLYMLLSQNLVQLQEIPKTPDFAPSRTFYLYTCNQLPTARMLLQNCYKTVANLIERRLF 455
Query: 477 ELDREKELL 485
E K LL
Sbjct: 456 ESKESKRLL 464
>gi|410171283|ref|XP_003960212.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
isoform 4 [Homo sapiens]
Length = 411
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/433 (22%), Positives = 192/433 (44%), Gaps = 49/433 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
+ T +S P + E+ +S G N++ + L L + L FV S DS Y
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + +ESVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLESVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 421 LYKLWKDGYLLME 433
LYK+ + ++ ++
Sbjct: 395 LYKMLSENFMSLQ 407
>gi|58865732|ref|NP_001012081.1| DNA-directed RNA polymerase III subunit RPC3 [Rattus norvegicus]
gi|81883800|sp|Q5XIL3.1|RPC3_RAT RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|53733475|gb|AAH83667.1| Polymerase (RNA) III (DNA directed) polypeptide C (62kD) [Rattus
norvegicus]
gi|149030569|gb|EDL85606.1| rCG51882 [Rattus norvegicus]
Length = 533
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 107/497 (21%), Positives = 215/497 (43%), Gaps = 50/497 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T+ S +QVK AL VLI
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L +R+ +++ + +V+ LL
Sbjct: 61 NLVI---------YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G++T+ K++ DR + ++G +D + V+L H+V+RCP L+P +
Sbjct: 112 LNGKMTMSAVVKKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP-----LVPDT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
+ S P + + +P + S++ G++ ++S+
Sbjct: 167 D--------SSDPGPPPPAPNLVINEKDMYLVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE + D + + ++ N + F + R + + V +D ++ ++ M
Sbjct: 210 AGEPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 269
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDA 354
L+ + ++ T + P + E+ +S G N++ + L L + L F+
Sbjct: 270 LRMS-----EITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGK 324
Query: 355 SSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
+ DS Y I+ K + +ESV+ +R+G RIFRL+ + + LE ++ D
Sbjct: 325 AGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQK-KHLEQKQVEDFA 383
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAAL 468
+ K+A +LYK+ + ++ ++++ T A F L+ VN + +L + +
Sbjct: 384 MIPAKEAKDMLYKMLSENFISLQEIPKTPDHAPSRTFYLYTVNVLSAARMLLHRCYKSIA 443
Query: 469 NLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 444 NLIERRQFETKENKRLL 460
>gi|355389037|gb|AER62461.1| hypothetical protein [Heteranthelium piliferum]
Length = 215
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 165 RCPASEPLLMPISEEEG-PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE 223
RCP +EP P +E+ AR++ K+A+++ ++EQ+VV A + RFS +
Sbjct: 1 RCPKAEPYFNPQEDEQSTSARRRVPKTAEEVL---SLEQKVVNTATLSDPERFSEIPYSM 57
Query: 224 SDVGEKEKNSNNVTPGEKRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
D + N G KRKH E+DE E V++R NFE FI L+ K C +
Sbjct: 58 EDASKTNDCPQNAVAGAKRKHGAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCAER 117
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRA 341
+ L G + + +A + K NSV S++ + E++ + E G M++ ++
Sbjct: 118 KKPKLKVGTHPIWESFFEANLTD----KDTNSVTSSINGVLEKLGQKEGGALMSIGQIKP 173
Query: 342 SLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 386
L+ +L + + ++ D K++E +NEE+ES+V K+YG++
Sbjct: 174 VLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQE 215
>gi|13325210|gb|AAH04424.1| POLR3C protein [Homo sapiens]
gi|325463117|gb|ADZ15329.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD) [synthetic
construct]
Length = 411
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/433 (22%), Positives = 192/433 (44%), Gaps = 49/433 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YS 360
+ T +S P + E+ +S G N++ + L L + L FV S DS Y
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYV 335
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ K + ++SVV +R+G RIFRL+ + + +E ++ D + K+A +
Sbjct: 336 INLHKALASLATATLKSVVQERFGSRCARIFRLVLQK-KHIEQKQVEDFAMIPAKEAKDM 394
Query: 421 LYKLWKDGYLLME 433
LYK+ + ++ ++
Sbjct: 395 LYKMLSENFMSLQ 407
>gi|303274164|ref|XP_003056405.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462489|gb|EEH59781.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 287
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 148/281 (52%), Gaps = 23/281 (8%)
Query: 261 VYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSS 320
++R NF F RR +HK C VR +DD ++L +L S E K + + + + +
Sbjct: 10 LWRINFVEFNRRFQHKACSATVRTKVDDETNHLLLLLLDILSPREVKDRGQ-AASIHQAD 68
Query: 321 IYEEVIKSEAGRNMTLDHVRASLVQL----GEL--SFVDA-SSDSYSIDFEKIIEIAQNE 373
I + KS ++ + L QL G+L F D ++YS+D + +++ + +
Sbjct: 69 ILPMICKSRKCSSIV---AKERLKQLCDSTGDLVSCFRDVQGGNNYSVDVNRTMQLIRTK 125
Query: 374 EVESVVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432
E+E+++ +R+G A RIFR LL KS LE ++++ + KD ++LYKL K Y+ +
Sbjct: 126 EIEAIIRERFGVPACRIFRLLLLKSN--LEQKQVAELAMIPVKDTRELLYKLLKAEYVQI 183
Query: 433 EKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL--- 487
+++ T A F LW+V+ ++V E+F NL R+ +EL RE+E L+L
Sbjct: 184 QEVSRTSDHAPSRTFFLWRVDLARAIENVERELFRTTSNLRSRLLHELARERETLSLLEC 243
Query: 488 PADKRTGPLQ--DRYN--RIRKVRILLESSQMKLDDAILLF 524
ADK T L R N R+R + LESS +LD+ + LF
Sbjct: 244 AADKVTVALTPGQRCNLARMRTIGTRLESSLQRLDELLPLF 284
>gi|427789313|gb|JAA60108.1| Putative polymerase rna iii dna directed polypeptide c
[Rhipicephalus pulchellus]
Length = 517
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 113/479 (23%), Positives = 214/479 (44%), Gaps = 48/479 (10%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG +V V E LL+ + + R T L ++K +L+VLI QN
Sbjct: 12 ILKDHFGPVVQTVGEALLKVSWRSLGEIARATNLPLSKIKKSLMVLIHQNLA-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F P+ +Y + D +L VR+++++ + + +V+ +L +GRL + +
Sbjct: 64 -NFEAHPRGTVKYSINADRVLCLVRYSRYIYCTKLLYGEAGEFIVEEILLNGRLCMSSVL 122
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
K E++ + ++E V LV ++ R P +P + PA K S
Sbjct: 123 Q--KVLERQQGAGTAEGVKEKFVDLVKTGFLCRVPYPDP--------DAPASKIPS---- 168
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
+ P+ + ++ E L + + S + E P +K K + + D+
Sbjct: 169 -LILPDDVMYKIPEVKLYLLKQKLSAEASEEP-------------PAKKVKMEDPQGDK- 213
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
DE+ +R N + F + LR + ++ + + A V+ ML+ S K
Sbjct: 214 -QPDEKE-YWRVNIDRFDQHLRDQLIVEALSKRMGAKAGEVVRTMLR-LSETRCNPKDAF 270
Query: 313 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV---QLGELSFVDASSDSYSIDFEKIIEI 369
S P+S S I++ + + LD SLV LG + D +S++ E + +
Sbjct: 271 SAPVSRSEIHQFLKRETTFSPQELDSY-LSLVADDALGLVRRTDERGGMFSVNLELALRL 329
Query: 370 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 429
+ S+V R+G + RIFRLL + + LE +I + + +DA ++ YK++++ +
Sbjct: 330 LAEGVLASIVQDRFGAKSCRIFRLLLQK-KYLEQKQIEELAMITARDAKEMTYKMFEEKF 388
Query: 430 LLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 486
+L ++L T A L+ V+ L + VL+ + A N+ LR + + +K LL+
Sbjct: 389 VLAQELPRTPDYAPSRMIYLFHVDIPQLSRQVLEWCYKAMSNMMLRRMHVTEEQKRLLD 447
>gi|389741288|gb|EIM82477.1| hypothetical protein STEHIDRAFT_171381 [Stereum hirsutum FP-91666
SS1]
Length = 552
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 128/518 (24%), Positives = 231/518 (44%), Gaps = 85/518 (16%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M E + V +I HFG L +KV LL +G L+ ++ R++ L V+ ++LVL+Q
Sbjct: 1 MADEDTARLCVQIIHTHFGPLTSKVASTLLTRGRLSFPHLVRFSSLKPRTVRASILVLVQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
N + ++ DG + V ++ L R+R+ +++ + Q F + ++VQ +
Sbjct: 61 HNLLWHAQSDD-----DGE----VFEVNVEDCLTRLRYGRYVWLAEQLFGKAAADIVQLI 111
Query: 121 LEHGRL----TLKQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA------ 168
L+HG+L + QM F AK S K + L LV++ Y++ A
Sbjct: 112 LDHGKLRPPDIISQMPIFLDAKESAK---------YTQALFTLVSSSYLKPATALSHQST 162
Query: 169 SEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD--- 225
++ L +EE+ A+ G +AK++ E ++V ++ L E E D
Sbjct: 163 TDTRLKYFAEEK--AKVVGYPTAKQLREA----KEVADSRLKRE----------EEDAEK 206
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
+G K K ++ V E + V +R N + F +R+K R
Sbjct: 207 IGLKRKAREQGGRKSSKRQAVEE-----EVVDDDVFFRVNAQKFNIHIRNKLIESAARER 261
Query: 286 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAG-------------R 332
+DGAA V+ A L+AT S +K V S ++++I + +
Sbjct: 262 FNDGAALVMRAALKATESKQKSVADVRSDSTTVATIAMHLSDEDVSTLSSTLITSSKSTS 321
Query: 333 NMTLDHVRASLVQ--LGELSFVD--------ASSDSYS-----IDFEKIIEIAQNEEVES 377
+ + +L+Q LG LSF D AS S+S ++FE + + + +E+
Sbjct: 322 SSSSSKKTITLLQNFLGMLSFADNPTAAGRAASFVSFSGSKLFVEFETVGKRLRRRVLEA 381
Query: 378 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 437
V +R+G D R+ RLL +G++ E +IS + KD +L + + + ++++
Sbjct: 382 VTRERHGEDGVRVLRLLMDTGKVDE-KQISKVAMMAPKDCRPLLSAMSAESLISIQEVPK 440
Query: 438 TGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
+ R F LW V++Q + +L ++ N+SLR
Sbjct: 441 SADRNPTRTFYLWYVDQQKAYSVLLLNLYKTLYNISLR 478
>gi|409046168|gb|EKM55648.1| hypothetical protein PHACADRAFT_121372 [Phanerochaete carnosa
HHB-10118-sp]
Length = 541
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 126/511 (24%), Positives = 219/511 (42%), Gaps = 53/511 (10%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+IT FG L AK LL +G L + R++ L + ++VL+Q N + Q
Sbjct: 12 QIITREFGPLTAKAAAVLLHRGRLPLAQIIRFSGLRPRTARTCVIVLVQHNVLWH---AQ 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
D + + NT D L R+R+ ++ Q F + E+VQ +L++G+L +
Sbjct: 69 TDTDGEVLEFNT------DECLMRLRYGRYAWQAEQLFGKVGAEIVQLILDNGKLRRPDV 122
Query: 132 FDRAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
R + V SL + KLV A Y++ P++ +L S + + +
Sbjct: 123 ISRLSIYDP----VKAHSLYSQAFHKLVEASYLK--PST--VLSHQSPRDKRIQYGAEEK 174
Query: 191 AKKIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
AK G P E +Q E A + + +E+ S+ + + + DV++
Sbjct: 175 AKLSGFPTAKELRQAKEVAEARLRREEEEAEKIGTKRKAREQRSHRLKKRKTTEEDVVDD 234
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
D V +R N E F +R+K D VR +D AA V+ A L++T + + K+
Sbjct: 235 D---------VYFRINCERFNIHVRNKIIEDAVRERYNDSAALVMRAALKSTEAKQLKLT 285
Query: 310 TKNSVPLSLSSIYEEVIKSE-AGRNMTLDHVRASLVQLGEL-----------------SF 351
S P SL++I + + E + + + + L + SF
Sbjct: 286 DVRSDPTSLANIATHISEDEDLSIGLAIGKRPSQMAMLKDYCGILAAADNPTPAGKAASF 345
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
V + ++FE I + +E+V +RYG D RI LL +G+L E +IS T
Sbjct: 346 VSLNGSKVQVEFEIIDNRLRRRILEAVTRERYGDDGVRIISLLLSTGKLDEK-QISKTGM 404
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +L + D + ++++ + R F LW V+ Q + ++ ++ N
Sbjct: 405 MAPKDVRPLLSAMAADSLISLQEVPKSADRNPARTFFLWYVDLQKAYTVLVGSLYKTLYN 464
Query: 470 LSLRVSYELDREKELLN--LPADKRTGPLQD 498
+ R E +E+ LL L +RT +QD
Sbjct: 465 VITRRKSE--QEEPLLKAVLEKRQRTDVMQD 493
>gi|346468825|gb|AEO34257.1| hypothetical protein [Amblyomma maculatum]
Length = 516
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 118/485 (24%), Positives = 212/485 (43%), Gaps = 61/485 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V ECLL+ T + R T L ++K +LLVLI QN V+ P
Sbjct: 12 ILKEHFGAVVQSVGECLLKVTSRTLAEIARATNLPLSKIKKSLLVLIHQNFVEFHA--HP 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TL 128
GFA +Y + D +L +R+ +++ + +++ +L +GRL +
Sbjct: 70 RGFA-------KYSIHADRVLCMLRYPRYIYCAKLLYGDAGEFIIEEVLLNGRLCMSAVI 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
+++ DR +GN + +++ V LV +++ R P +P + + P
Sbjct: 123 QKVLDRL-----QGN-STAEEVKQKFVDLVQTNFLVRVPYPDP---NVEGTKIPTLVLRE 173
Query: 189 KSAKKIGEPE--TIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
+ KI + + ++Q EA+L A + E+ GEK+ P EK
Sbjct: 174 EDVHKIPQVKLYLMKQNYGEASLEPPAKKI----KTENLDGEKQ-------PDEKE---- 218
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
+R NF+ F + LR + + V + A V+ ML+ S
Sbjct: 219 --------------YWRVNFDRFHQHLRDQLVVQAVSKRMGSKAGEVVRTMLR-LSETRS 263
Query: 307 KVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV---DASSDSYSIDF 363
K SVP+S S I++ + K + LD SL+ L V D +S++
Sbjct: 264 HPKDVFSVPVSRSEIHQALKKEINISSQELDSY-LSLIADDALLLVRRTDERGGMFSVNL 322
Query: 364 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 423
E+ + + + S+V R+G + RIFRLL + E +I + + +DA + YK
Sbjct: 323 ERAVRLLAEAVLTSIVQDRFGAKSCRIFRLLL-VKKYTEQKQIEELAMIPARDAKEWTYK 381
Query: 424 LWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 481
++++ +++ ++L T A L+ V+ L + VL+ + A NL R +
Sbjct: 382 MFEEKFIMAQELPRTPDYAPSRMIYLFYVDIPQLSRRVLEWCYQALTNLVQRRDHITQEH 441
Query: 482 KELLN 486
K L++
Sbjct: 442 KRLVD 446
>gi|390598265|gb|EIN07663.1| hypothetical protein PUNSTDRAFT_103720 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 541
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 115/492 (23%), Positives = 212/492 (43%), Gaps = 58/492 (11%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T+ ++ +HFG L A V LL +G L + RYT L V+ ++LVL+Q N +
Sbjct: 7 TRLCTQIVHSHFGPLTANVASTLLTRGRLPLSTIIRYTGLKPRTVRASVLVLVQHNILWH 66
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
+E DG N + V D+ L R+RF +++ + + ++VQ +L+HG+L
Sbjct: 67 TVSE--DG-------NEVFEVNVDDCLARLRFGRYVQQAEELLGKAARDIVQIILDHGKL 117
Query: 127 TLKQMFDRAKSSEKEGNLVDLDS-----LRETLVKLVTAHYVERCPASEPLLMPISEEEG 181
+ +E L D+ + + LV++ Y++ + +L +S +
Sbjct: 118 ---------RQAEVLAYLAQYDTKAQSRYSQAMHNLVSSSYLK----ASTVLSHVSPRDK 164
Query: 182 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 241
+ + + AK G P +Q+ EA EA R + +G K K
Sbjct: 165 RIKYEAEEKAKITGFPTA--KQLREAKELAEA-RLKRERDEAEKIGLKRVTKETGYKSSK 221
Query: 242 RKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT 301
RK + E V D+ V +R N E F +R+K V + AA V+ A L+ T
Sbjct: 222 RK----AVTEEDVVDDD-VYFRVNCERFNVHIRNKLIESAVLERFNQSAAAVIRATLKTT 276
Query: 302 SSAEKKVKTKNSVPLSLSSIYEEVIKS---EAGRNMTLDHVRASLV----QLGEL----- 349
+ + V S P S+++I + + E+G + +S+ +G L
Sbjct: 277 EAKQMSVSDVRSDPTSVANISQCLADDDDLESGLVLNTSKTPSSIALIKHYIGVLSAADN 336
Query: 350 --------SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 401
SFV ++ ++FE I + +E+V +R+G + RI RLL +G++
Sbjct: 337 PTPAGKASSFVSMTNSKVQVEFEIIARRLRRRILENVTRERHGDEGVRILRLLMDTGKMD 396
Query: 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHV 459
E ++ + KD +L + D + ++++ + R F LW V+ + ++
Sbjct: 397 E-KQVGKIAMMAPKDVRPLLSAMATDSIITIQEVPRSADRNPTRTFYLWFVDVDKAYSNL 455
Query: 460 LDEMFHAALNLS 471
+ ++ N+S
Sbjct: 456 IRSLYKTLYNIS 467
>gi|392567127|gb|EIW60302.1| hypothetical protein TRAVEDRAFT_164994 [Trametes versicolor
FP-101664 SS1]
Length = 543
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 219/512 (42%), Gaps = 69/512 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + FG L A V +L G L + R++++ V+ A+L+L+Q N + +E+
Sbjct: 13 IVRSVFGPLTATVTSIILTHGRLGLPQLLRFSKMKPRTVRAAILILVQHNLLWHSQSEE- 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----TL 128
+ + D L R+R+ +++ + Q + + E++Q +L+HG+L +
Sbjct: 72 --------EGEVFEINIDECLMRLRYGRYVWLAEQLYGKSGGEIIQLVLDHGKLRPPDII 123
Query: 129 KQM--FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
Q+ +D K L +TL KLV Y++ P++ LL S E R +
Sbjct: 124 AQLSIYDPVKGPA---------LLTQTLHKLVDEAYLK--PST--LLSHFSPREKLIRYE 170
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
G + K G P ++V EA +A R + VG K K + KRK
Sbjct: 171 GEEKRKIPGFPTA--REVREARETAQA-RLTREEEEAEQVGMKRKAKDYSHKASKRK--A 225
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
+E D V + V +R N E F +R+K ++ A VL A L+AT ++
Sbjct: 226 IEED---VEVDDGVYFRVNCERFNVHIRNKLIETAASERFNESAGTVLRATLKATEPRQR 282
Query: 307 KVKTKNSVPLSLSSIYEEVI------------KSEAGRNMTLDHVRASLVQLGEL----- 349
K+ S P S +++ + S+ MTL V+ L L
Sbjct: 283 KLTDVRSDPTSFANVAMHLPDDVDLASGLVLQSSKTPPTMTL--VKEYLGILASADNPTP 340
Query: 350 -----SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 404
SFV ++FE I Q +ESV +R+G + RI RLL+ +G +++
Sbjct: 341 AGRAASFVSLGGSKVQVEFEIIARRLQRRVLESVARERHGDEGVRIIRLLADTG-MMDEK 399
Query: 405 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDE 462
+IS + KDA +L + + + ++++ + R F LW V+ Q L
Sbjct: 400 QISKIGMMAAKDARPLLSAMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKASTVQLRS 459
Query: 463 MFHAALNLSLRVSYELDREKELLNLPA--DKR 492
++ N++ R E+E NL A DKR
Sbjct: 460 LYKTLYNIATRRQA----EQEEPNLKAVLDKR 487
>gi|395333322|gb|EJF65699.1| hypothetical protein DICSQDRAFT_177158 [Dichomitus squalens
LYAD-421 SS1]
Length = 542
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 116/496 (23%), Positives = 218/496 (43%), Gaps = 62/496 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-QAFTTEQ 71
++ + FG L AKV LL G L + R+++L V+ ++LVL+Q N + A + ++
Sbjct: 13 IVRSVFGPLTAKVASLLLTHGRLGLSQLVRFSKLKPRIVRASVLVLVQHNLLWHAQSEDE 72
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL----- 126
+ F + NT D L R+R+ +++ + Q + + E+VQ +L+HG+L
Sbjct: 73 GEVF----EINT------DECLMRLRYGRYVWLAEQVYGKAGAEIVQLILDHGKLRPPDI 122
Query: 127 -TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+ ++D K+ + +TL KLV A Y++ P++ ++ +S + R
Sbjct: 123 VSQLSIYDPIKAPA---------VISQTLHKLVEATYLK--PST--VISHLSPRDKRIRY 169
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
+ + K G P E + A + R +G K K + +++ +
Sbjct: 170 ETEEKRKISGFPTAKE---LRQAKEIADARLRREEEEAEQIGMKRKAKDQYKSSKRKAME 226
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAE 305
++ V DE V +R N E F +R+K ++ A VL A L+AT +
Sbjct: 227 ----EDLEVDDE--VYFRVNCERFNVHIRNKLIEATAAERFNECTALVLRATLKATEPKQ 280
Query: 306 KKVKTKNSVPLSLSSIYEEV---IKSEAGRNMTLDHVRASLVQLGEL------------- 349
+K+ S P SL++I + + AG + +++ + E
Sbjct: 281 RKLSDVRSDPTSLANIAMHLPDDVDLSAGLVLQSSKKPSTMTLMKEYLGFLSSADNPTPA 340
Query: 350 ----SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 405
SFV S ++FE I + +E+V +R+G + RI RLL +G +++ +
Sbjct: 341 GRSASFVSMSGSKVQVEFEIIARRLRRRVLEAVARERHGDEGVRIIRLLLDTG-MMDEKQ 399
Query: 406 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEM 463
IS + KD +L + + + ++++ + R F LW V+ Q + +LD M
Sbjct: 400 ISKVGMMAPKDVRPLLSSMSAESLVSLQEVPKSADRNPTRMFYLWYVDLQKAYNVLLDNM 459
Query: 464 FHAALNLSLRVSYELD 479
+ N++ R E D
Sbjct: 460 YKTLFNITARRQAEQD 475
>gi|2228748|gb|AAB63675.1| RNA polymerase III subunit [Homo sapiens]
Length = 533
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 111/499 (22%), Positives = 216/499 (43%), Gaps = 54/499 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ L+R G + + T S +QVK AL VL+Q
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N V + + +Y +L VR+ +++ + +V+ LL
Sbjct: 61 NLV---------SYQVHKRGVVEYEAQCSRVLRIVRYPRYIYTTKTLYSDTGELIVEELL 111
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ K++ DR + ++G +D + T +L H+V+ P+ +P +
Sbjct: 112 LNGKLTMCTVVKKVADRLTETMEDGKTMDYXEVSNTFXRLADTHFVQXXPS-----VPTT 166
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
E P + + I E + +P + S++ G++ ++S+
Sbjct: 167 ENSDPGPPPPAPTLV-INEKDMY-------LVP----KLSLIGK-----GKRRRSSDEDA 209
Query: 238 PGEKRKHD--VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
GE + D +L++ + R N + F + R + + V +D ++ ++
Sbjct: 210 AGEPKARDQNILQITRXPF-QMMGFIGRPNLDRFRQHFRDQAIVSAVANRMDQTSSEIVR 268
Query: 296 AMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFV 352
ML+ + ++ T +S P + E+ +S G N++ + L L + L FV
Sbjct: 269 TMLRMS-----EITTSSSAPFTQPLFSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFV 323
Query: 353 DASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISD 408
S DS Y I+ K + +ESVV +R+G RI RL+ + + +E ++ D
Sbjct: 324 GKSGDSGGGMYVINLHKALRSLATATLESVVQERFGSRCARICRLVLQK-KHIEQKQVED 382
Query: 409 TTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHA 466
+ ++A +LYK+ ++ ++++ T A F L+ VN + + D + +
Sbjct: 383 FAMI-LQEAKDMLYKMLSGNFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLFDRCYKS 441
Query: 467 ALNLSLRVSYELDREKELL 485
NL R +E K LL
Sbjct: 442 IANLIERRQFETKENKRLL 460
>gi|449268623|gb|EMC79476.1| DNA-directed RNA polymerase III subunit RPC3 [Columba livia]
Length = 533
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 121/503 (24%), Positives = 209/503 (41%), Gaps = 62/503 (12%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+T+ K ++ HFG++V K+ LLR G + + T L +QVK AL VLIQ
Sbjct: 1 MTQAEIKLCSLLLHEHFGEIVEKIGTQLLRAGGQALRGIAGGTGLLLDQVKKALCVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
N T +P + +Y IL +R+ +++ + +V+ LL
Sbjct: 61 N----LATFRPR------RGGVEYEAQCGRILRILRYPRYIYTAKTLYGDTGELIVEELL 110
Query: 122 EHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS 177
+G+LT+ +++ DR + ++G +D + T V+LV H+V+RCP L+P
Sbjct: 111 LNGQLTMSAVVRKVADRLTETMEDGKTMDYADVSSTFVRLVDTHFVQRCP-----LVP-- 163
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
EGP + + V R S+V K + S
Sbjct: 164 --EGPQSPEVPPPPAPTLLSSDKDMYTVP--------RLSLVGK------GKRRRSCEEE 207
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
GE R + + G + E + + + F + R + + V +D ++ ++ M
Sbjct: 208 DGEPRAK---KQKQEGESSEVPGRLKPHIDRFHQHFRDQAIVSAVANRMDQTSSEIVRTM 264
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKS-EAGRNM---TLDHVRASLVQLGELSFVD 353
L+ + +V T + P + E+ +S AG N+ LD A L L FV
Sbjct: 265 LRMS-----EVTTSSGAPYTQPLSSNEIFRSLPAGYNIVKQVLDQYLALLAD-DPLEFVG 318
Query: 354 ASSDS----YSID-----FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETD 404
S DS Y++ F K +R+G RIFRLL + + LE
Sbjct: 319 KSGDSGGGMYTVSIFWGRFFKTFAPFPLHVTGVPAPRRFGSRCARIFRLLLRK-KHLEQK 377
Query: 405 KISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDE 462
++ D + K+A ++LYK+ + ++ ++++ T A F L+ VN + +L
Sbjct: 378 QVEDFAMIPAKEAKEMLYKMLSESFVSLQEIPKTPDHAPSRTFYLYTVNVPAAARMLLHR 437
Query: 463 MFHAALNLSLRVSYELDREKELL 485
+ + NL R +E K LL
Sbjct: 438 CYKSVANLMERRQFETKENKRLL 460
>gi|440792790|gb|ELR13998.1| RNA polymerase III subunit RPC82 helixturn-helix domain containing
protein [Acanthamoeba castellanii str. Neff]
Length = 328
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 142/329 (43%), Gaps = 32/329 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++T HFGD++ KV LL + L ++ TEL QVKN+LLVLIQ N V +F E P
Sbjct: 10 IVTEHFGDVIGKVAGALLTRDRLLMHELESITELEFLQVKNSLLVLIQHNLV-SFIEEHP 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+G + Q V F IL R+RF +FL + F + +VQ LLEHGRLT +
Sbjct: 69 EGNPQDVQTYYQASVSF--ILWRLRFPRFLQVAKHRFGDEGRLMVQVLLEHGRLTHDLIL 126
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSK 189
A + + L +L+ +V R P + P P IS + ARK
Sbjct: 127 QHAAQA------AGFELADTMLTELIRQRFVVRVPEA-PGPQPAVDISTQLNAARKAKPG 179
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGE---KEKNSNNVTPGEKRKHDV 246
+ E + + MR S ++N+ E K++ S + K
Sbjct: 180 AGGDEDEDDGV------------GMR-SGLSNLSEGYREAKPKKRKSKGAPKDPQPKRQN 226
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEK 306
++ + D V + N E F RH+ I V +D A L M +
Sbjct: 227 IDPLSGRITD---VYWCINPERFNMHFRHEAIIKMVEEKVDATAGIYLRVMFKMIEPYIH 283
Query: 307 KVKTKNSVPLSLSSIYEEVIKSEAGRNMT 335
+ +SV +S + +++E+ K + ++T
Sbjct: 284 SLSDHDSVSVSTTELWQELKKEYSSEDIT 312
>gi|392596049|gb|EIW85372.1| hypothetical protein CONPUDRAFT_118168 [Coniophora puteana
RWD-64-598 SS2]
Length = 538
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 121/497 (24%), Positives = 219/497 (44%), Gaps = 60/497 (12%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDE--QVKNALLVLIQQNCVQ 65
K V +I +HFG L A + LL +G L+ + R+T+ S + V A+L LIQ N +
Sbjct: 8 KLCVQIIDSHFGPLTASLVSTLLARGRLSLPQLIRFTDPSPKPRSVHAAVLSLIQHNLL- 66
Query: 66 AFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
+ + G + + NT F+ + R+RF +F+ + F E+VQ +L+HG+
Sbjct: 67 -WHSVDDAGGQEMLEVNT-----FECFM-RLRFGRFVALADDLFGSAGTEIVQLVLDHGK 119
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS--------EPLLMPIS 177
+ + S +G+ + + ++TL KLV Y++ P++ + L+ +
Sbjct: 120 VRPPDII----SQLSQGDKKNTSAYKQTLHKLVDRSYLK--PSTVLSHQSPHDKLIAYDA 173
Query: 178 EEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT 237
EE R G +AK++ E ++ EA L E VG K K +N+T
Sbjct: 174 EERR--RIAGFPTAKQLREA----RETAEARLKRE-------EEEAERVGFKRKAKDNIT 220
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
++ V DE + D+ V +R N++ F +R++ VR ++ AA V+ A
Sbjct: 221 QRSSKRKAV---DEDALDDD--VYFRVNYDKFNIHIRNQLIETLVRERFNESAACVVHAT 275
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEV---------IKSEAGRNMTLDHVRASLVQL-- 346
L++T +K + S P S +SI + + S + ++ + L +
Sbjct: 276 LKSTELKQKSMTDVRSDPTSTASIAMHIPDDAPLSAGLASSSKKSNPASLAKEFLTLMSS 335
Query: 347 ----GELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLE 402
SFV + ++FE I + +E V +++ + RI RLL G++ E
Sbjct: 336 SANPSAASFVSMGENKVYVEFETISRRMKRHVLEEVTREKHKDEGVRILRLLLDVGKMDE 395
Query: 403 TDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVL 460
+I+ + KD +L L D + +++ + R F LW V+ + +L
Sbjct: 396 K-QIAKVAMLPSKDLRPLLSALSSDFIISTQEVPRSADRNPTRTFYLWYVDLNRAYTSIL 454
Query: 461 DEMFHAALNLSLRVSYE 477
++ N+ LR S E
Sbjct: 455 RSLYKTLFNIGLRRSAE 471
>gi|302690682|ref|XP_003035020.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
gi|300108716|gb|EFJ00118.1| hypothetical protein SCHCODRAFT_14169 [Schizophyllum commune H4-8]
Length = 517
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/504 (23%), Positives = 210/504 (41%), Gaps = 76/504 (15%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+I +HFG L AKV + LL +G L + R T L V+ A LVL+Q N +
Sbjct: 11 AQIINSHFGPLTAKVADALLTRGRLPVPQIVRATGLRPRTVRAACLVLLQHNVLW----- 65
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
+A P + + + R+RF + + Q F Q ++VQ +L+HG+L
Sbjct: 66 ----YALDPIDGEVLEISPEECMLRLRFGRAVWQAGQLFGQAGSDIVQLVLDHGKLRPPH 121
Query: 131 MFDR-AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ ++ + SS KE +L R+TL KLVT Y++ P+ K
Sbjct: 122 IVEQLSLSSPKETSL-----HRQTLHKLVTLAYLK-----------------PSTPKRHL 159
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
S + +E++ A P E + +R+ D E
Sbjct: 160 SPRDKAIKYELEEKAKIAGFPT--------------AKELREAKEAAVARLRREED--ED 203
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
CG+ DE V +R NF+ F +R++ R ++GAA V+ A+L+AT S + +
Sbjct: 204 AACGL-DE--VYFRVNFDKFNTHIRNQLIEKAARERFNEGAAAVMRAVLKATESTQTSLT 260
Query: 310 TKNSVPLSLSSIYEEVIK------------SEAGRNMTLDHVRASL------VQLGELSF 351
+ S +S+ +I + + S+A ++ H L G S
Sbjct: 261 EERSDAVSIGNIILNIPEDADLASGLAISASKASKSTCTKHYLHLLACADNPTPTGRASA 320
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK-ISDTT 410
+ +F I + +E+ +++G + R+ RLL SG+ + DK ++
Sbjct: 321 FLSYGSKIQAEFGLIGRRLRRHVLEASAREKHGPNGLRVVRLLLGSGK--QDDKQVAHGV 378
Query: 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAAL 468
+ KD +L L D + +++ T R F LW V++ + +L E++
Sbjct: 379 MLPAKDVRTVLAALAADSLVSTQEVPKTADRNPTRTFYLWHVDQTKAYTVLLGELYKTLY 438
Query: 469 NLSLRVSYELDREKELLNLPADKR 492
N+ +R E RE+ ++ +KR
Sbjct: 439 NIGVRRQAE--REEPMVRAVLEKR 460
>gi|321455740|gb|EFX66865.1| hypothetical protein DAPPUDRAFT_218866 [Daphnia pulex]
Length = 518
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 106/485 (21%), Positives = 223/485 (45%), Gaps = 67/485 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +++G++V +V LLR+G ++ T LS +VK AL V+IQ N V+ +E+
Sbjct: 16 LLNHYYGEIVGQVGSYLLRRGNRMLNDIPTATGLSIREVKKALAVMIQHNLVKFQASERN 75
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ A+ Y ++ N+ +R+ K+L ++ + + L++ LL G+ + +
Sbjct: 76 NNVAE-------YTMIHHNVYCLIRYPKYLYMIKRIYGTSEEILLEILLNLGQASASNVI 128
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ + E N++ +L ++ +L +++ RCP K +++A
Sbjct: 129 FHSANRLNEANVLSPSALHQSFQRLAQDNFIIRCP------------------KLAENAT 170
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
+ P T+E + E +F+V NVE + P + + + +
Sbjct: 171 LLKVP-TLEIE--------EKEKFAV-PNVE------------IEPIARMLKE--KATQL 206
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ---ATSSAEKKVK 309
G + +++R N E F LR+ ++ +D A + +L+ +S+ + V
Sbjct: 207 GGHCDSEIIWRVNHERFDIELRNVILVNAAARRVDTTAGELYHLILKLWRESSNPDSPVT 266
Query: 310 TKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FVDASSDS----YSIDF 363
T P+S + I + V K+++ + L+H L L E S +D + D+ +++D+
Sbjct: 267 T----PVSYNVIKDAVRKNDSSP-ILLEHFDHYLRVLYEDSAGLIDRAGDAGGGQFNLDY 321
Query: 364 EKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYK 423
K+ E ++S+V +R+G A R+FR L++ + +E D++ + + K+A YK
Sbjct: 322 SKVFENLACASLDSIVLERFGSKALRLFR-LTRIQKFMEQDQMQNVAMIPAKEAKMFTYK 380
Query: 424 LWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 480
L + +L +++L A F+L+ V + + L+ + N +R ++L
Sbjct: 381 LLEHNFLQIKELKKGTSNFAPVKSFILYHVELPQVVRTTLEASYKGLFNAMVRQMHDLTE 440
Query: 481 EKELL 485
+ LL
Sbjct: 441 NQRLL 445
>gi|393245739|gb|EJD53249.1| hypothetical protein AURDEDRAFT_180799 [Auricularia delicata
TFB-10046 SS5]
Length = 547
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 131/550 (23%), Positives = 230/550 (41%), Gaps = 78/550 (14%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N +
Sbjct: 8 KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHNILWHA 67
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
T+ + + D + R+RF ++++ + F Q+ E+V LL+HG+L
Sbjct: 68 ETDDRTEVME---------INIDECIARLRFGHYMSLAREIFGQEASEIVAILLDHGKLR 118
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMPISEEE 180
L + R S+ + V + + KL+++ +++ CP + L+ +E
Sbjct: 119 LPDILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LINYEADE 172
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
+K SAK I E A + R +G K K ++ G
Sbjct: 173 LKKKKTAIISAKDIRE-----------AKDLAVARLRKEEEEAEKIGFKRKAKEALS-GR 220
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K ++E D V DE V +R N F ++R+ + +D AA V+ A L+A
Sbjct: 221 ASKKQIVEED---VIDED-VYFRVNHSKFNVQIRNNLIVAAAAERYNDAAAVVICATLKA 276
Query: 301 -------TSSAEKKVKTKN---SVP----LSLSSIYEEVIKSEAGRNMTLDHVRASLVQ- 345
T + V T N S+P L+ Y S+A + + A+LV+
Sbjct: 277 AEAKSSLTDLRSEAVTTNNIMSSIPENHELASGLSYTSSKSSKAPKAPST----ANLVKE 332
Query: 346 -LGELSFVD---------------ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 389
+G LS D +S+ ++++ I + +E+VV +R+G D R
Sbjct: 333 FIGILSAADNPTPAGVAGSFLSTSSSAGKVQVEYDIIHRRLRRRVLEAVVRERFGDDGVR 392
Query: 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLL 447
I R+L +G+ ++ I+ KD +L + G + M+++ + R F L
Sbjct: 393 IIRILLATGK-MDDKHIAKVAMKPPKDVRTVLAGMSSAGIIAMQEVPKSADRAPIRTFYL 451
Query: 448 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK-RTGPLQDRYNRIRKV 506
W V+ + +L ++ N+ +R E + + L+ DK G L+D R
Sbjct: 452 WHVDLPKTYAVLLRNLYKTLFNIQMRKRAE-EEDNALIRGILDKCERGGLRDESQLTRPE 510
Query: 507 RILLESSQMK 516
R +L Q K
Sbjct: 511 REMLADWQEK 520
>gi|388580679|gb|EIM20992.1| hypothetical protein WALSEDRAFT_39160 [Wallemia sebi CBS 633.66]
Length = 554
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 119/497 (23%), Positives = 218/497 (43%), Gaps = 85/497 (17%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+T+ ++ ++ N FG +VAKV + +L G L + RY E+ +QV+ ALL+LIQ
Sbjct: 1 MVTKEASRLCGIILENDFGAVVAKVGQTVLEYGRLPLPLISRYAEIKAKQVRAALLILIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTI----LSQEFDQQCV-E 115
NC+ T+ + F D IL R+RF +++ + + +C E
Sbjct: 61 HNCMWHCQTDNDEFFETNA----------DEILARIRFGRYIRYAIDSYKDKLESRCAGE 110
Query: 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLV-TAHYVERCP-----AS 169
++ +L +G+L +F+R + +D ++++ LV+ + TA + + P
Sbjct: 111 MITTVLLNGKLRSGDIFERMPAD------IDETTMKKVLVQFLNTAAFTKSTPIMHVSPR 164
Query: 170 EPLLMPISEEEGPARKK----GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD 225
+ L+ E + KK G K KKI E + Q + L +E R V+ + +
Sbjct: 165 DKTLLYEKEIKDTTYKKSDILGPKDIKKIKE---LAQARLLQELQVE--RGEVLED-GTR 218
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
G K K S++ KR DV+ DE + +R N+E + RLR++
Sbjct: 219 AGMKRKKSSS-----KRGEDVITFDE-------NAYFRVNYEHYNVRLRNRLIAAEAAKR 266
Query: 286 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIY-----------EEVIKSE---AG 331
++ + ++ A L+AT K T+N V ++S + E +K +
Sbjct: 267 WNEQSGFIMEAFLRATEETRK--DTQNHVHDTISELVAIHQVAKYIPQENTLKKGIVLSN 324
Query: 332 RNMTLDHVRASLVQLGELSFVD---------------ASSDSYSIDFEKIIEIAQNEEVE 376
+ + + A Q+ LS D SS Y + +E + + V+
Sbjct: 325 KENNVQKLVAEYCQI--LSSQDFPGPAGASTRFLQKAGSSKEYHVCYETVCARIKRSLVD 382
Query: 377 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436
S+V +++G +A RI ++ + G+ LE IS + K+ + + KL G L ++++
Sbjct: 383 SLVKEQFGDEAARIINIVLEKGK-LEEKHISTIGLLSMKETRETIGKLQTSGLLQLQEVP 441
Query: 437 VTGAR--QSQFLLWKVN 451
+ R F LW V+
Sbjct: 442 KSADRAVHRTFYLWYVD 458
>gi|291241158|ref|XP_002740482.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide C
(62kD)-like [Saccoglossus kowalevskii]
Length = 530
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/489 (21%), Positives = 206/489 (42%), Gaps = 65/489 (13%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
++G++V KV L++ G + + T L +QV+ AL VLI N + F
Sbjct: 16 NYGEIVEKVGSYLIKYGLKALRAIALDTNLKLDQVRKALCVLITHNMAK---------FT 66
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAK 136
+ Y V +L R+ +++ + + +V+ +L++G+L + ++ +
Sbjct: 67 STKRGIIYYQVSVKTVLLLSRYPRYIYSVKTLYGDAGELIVEEILQNGQLLMSKVVRKVT 126
Query: 137 SSEKEG---NLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKK 193
E V+ +R+ + LV+ H+++R
Sbjct: 127 ERLNEALEDRTVEESFVRDKFIDLVSTHFLQRV--------------------------- 159
Query: 194 IGEPETIEQQVVEAALPMEA---MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
+ P I+ V E+ +E + +E + K + S + G KR + D
Sbjct: 160 VNPPSDIDSTVTESETAIEEEDLYKIPEAMKIEGCISRKRRRSEDEDRGTKR----IRTD 215
Query: 251 ECGVAD------EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--S 302
D + V + NF+ F + LR + ID V +D + ++ ML+ + +
Sbjct: 216 STASEDPSESFPDDGVYWHTNFDRFHQHLRDQAIIDAVSRRVDKVSREIVRTMLRMSELT 275
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS---- 358
+ K TK P+S I+ + + TLD L+ ++ F++ + +S
Sbjct: 276 TDPKATLTK---PMSSHEIFHALSRELNIPRPTLDQY-LKLLADDQIDFINKTGESGGGI 331
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y I+ K I+ +ESVV +R+G YRIFRLL LE ++ + + K+A
Sbjct: 332 YVINIYKAIKSLCIAHIESVVQERFGSKCYRIFRLLLLKQH-LEQKQVEEFAMIPAKEAK 390
Query: 419 KILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
++LY+++ + ++ ++++ T A F L+ VN + + +L+ + NL R +
Sbjct: 391 ELLYQMFSEHFVSVQEIPRTPDHAPSRTFYLFSVNLNQVCRMLLERCYKTNANLIARREH 450
Query: 477 ELDREKELL 485
+ + LL
Sbjct: 451 DTYENRRLL 459
>gi|402218291|gb|EJT98368.1| hypothetical protein DACRYDRAFT_57600 [Dacryopinax sp. DJM-731 SS1]
Length = 568
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 120/513 (23%), Positives = 207/513 (40%), Gaps = 77/513 (15%)
Query: 7 TKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
T V ++ FG ++ LL +G L + R T L V+ L+VLIQ N V
Sbjct: 7 THLCVQILQTFFGGPCYEIGRVLLSRGRLPLPLIARLTRLKPRTVRACLIVLIQHNVVWF 66
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
++ DG +GP+ +T Y V + + R+RF KF+ I + F + ++V+ +L+HG+L
Sbjct: 67 AESDGEDG--EGPRGDTFYEVNVEEVCMRLRFGKFVEIAADVFGDEAKDIVRCILDHGKL 124
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
L + D + + + + S R T LVT+ Y LMP S R
Sbjct: 125 RLPAVLDLLEVNAPKSTI----SHRSTFHALVTSRY----------LMPTS------RLL 164
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDV-GEKEKNSNN-----VTPGE 240
+ KI E IE++ ++ +P + S+ VE + E+E + +T G
Sbjct: 165 HTSPKDKIIAWEEIEKRKLK-EIPSAKVLRSIRDGVEDRLRTEREGQTTGLKRKPITTGG 223
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K + DE ++ V +R N+E F LR + V+SA+L+A
Sbjct: 224 KGRKKPRRDDEDEEVVDEDVWFRVNYERFNVHLRDTLLATGAAERYNPSFGAVMSALLEA 283
Query: 301 TSS---AEKKVKTKNSVPLSLSSIYEEV-IKSEAGRNMTLDHVRASLVQLG--------- 347
S ++ S P+S ++ + S G N T RA L+ G
Sbjct: 284 AMSVPNTHPRLSDVRSSPVSTPTLATFLQGGSSFGSNAT---SRAPLLSAGLKLPSSSTA 340
Query: 348 ----------ELSFVDASSDS-------------------YSIDFEKIIEIAQNEEVESV 378
LS D + + ++FE I E + VE
Sbjct: 341 PTSALKQYLLALSASDNPTPAGQAGAFTSRFAGGGGGEGKVQVEFETIAERMRRRLVEGY 400
Query: 379 VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 438
V +R+G A R+ +L G +++ +I+ + ++ L L +L ++++ T
Sbjct: 401 VRERWGDGAGRVLGVL-WGGTMMDERQIAKISLMQASVVRAALTALQSANFLSLQQVPKT 459
Query: 439 GARQS--QFLLWKVNRQILWKHVLDEMFHAALN 469
R+ F LW + Q + +L ++ N
Sbjct: 460 PQREPARSFFLWYCDPQNCYTSLLSTLYGTIAN 492
>gi|449667076|ref|XP_002165558.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Hydra
magnipapillata]
Length = 611
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 116/488 (23%), Positives = 206/488 (42%), Gaps = 83/488 (17%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ +I +HFGD+ +V LL+ G + +++ ++S ++VK L++LIQ N V
Sbjct: 125 ALQIINDHFGDISEQVVAYLLQNGQRSLKDICDNVKISKDEVKKVLVILIQHNLV----- 179
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL- 128
F T+Y NI+ R F +++ I + +++ LL +G TL
Sbjct: 180 ----SFNKYKNKFTEYHTELHNIIRRRSFQRYIYIAKLKHGDIGELIIEKLLLNGCDTLS 235
Query: 129 ---KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
K++ +R + + E D + + L++AHY+ R L P K
Sbjct: 236 KVAKRVTERLEVDDPEEQRPDQSVVIKKCSDLISAHYLMRYKC---LQYP---------K 283
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVT-PGEKRKH 244
+G K K I P + F VG+K K P K++
Sbjct: 284 EGKKETKDIN--------------PNDVFLFP------QGVGKKRKAQTKTDEPMSKKRK 323
Query: 245 DVLELDECGVADEQ----SVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
E DE +EQ V + NFE R D + A+++
Sbjct: 324 IDSEKDEEAGENEQYEDDGVYWYVNFE---------------RLDQDFNDQLITRAVVER 368
Query: 301 TSSAEKKVKTKNSVP-LSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSY 359
KK+ S P L +Y+ + ++ D V + +A+ Y
Sbjct: 369 IDQLIKKLP---STPRLDQQEVYQYL-------SLLSDEKTGGFVSKTD----EAAGGMY 414
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
S++ + +E+ ++V +R+G A R+FRLL + RLLE +I + + KD +
Sbjct: 415 SVNIQTSLEMICESVCSTIVMERFGSKACRVFRLLIQK-RLLEQKQIGELAMIPFKDVKE 473
Query: 420 ILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
+LYKL+++ +L ++++ T A F L+ V+ + + +L+ + A NL LR +E
Sbjct: 474 LLYKLFEESFLTIQEVSKTKDYAPSRSFYLFGVDMPQVSRLLLNRSYQAMGNLMLRRKFE 533
Query: 478 LDREKELL 485
++ K LL
Sbjct: 534 MEENKRLL 541
>gi|355389029|gb|AER62457.1| hypothetical protein [Aegilops longissima]
Length = 153
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 241 KRKHDVLELDE--CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
+RKH E+DE E V++R NFE FI L+ K C D + L G + +
Sbjct: 1 QRKHRAFEVDEELNSTIAENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFF 60
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 358
+A + K NSV S + I E++ + E MT+ ++ L+ +L + +
Sbjct: 61 EANLTD----KDTNSVTSSTNGILEKLGQKEGTAAMTIGDIKPVLL---DLQCTTSDGEE 113
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
++ D K++E NEE+ES+V K+YG++A+ IFRLL G
Sbjct: 114 FTFDLRKMVEACXNEEIESLVKKKYGQEAFTIFRLLVTQG 153
>gi|428185684|gb|EKX54536.1| DNA-directed RNA polymerase III subunit RPC3 [Guillardia theta
CCMP2712]
Length = 531
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/508 (22%), Positives = 210/508 (41%), Gaps = 89/508 (17%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A+ V+ +HFG VC L+R+ T + ++ TEL ++N LLVLIQ N V + T
Sbjct: 16 ALQVVKDHFGAASESVCAALIRRSQRTLKELQADTELGSAALRNNLLVLIQHNLV-SVTV 74
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTIL----SQEFDQQCVELVQGLLEHGR 125
+ + +Y + R+R+ KF T + S E + ++++ +LEHGR
Sbjct: 75 DSTSAARE-----CRYHFEVEEASLRLRYPKFCTHIKSQASMEHARVASQVMEAILEHGR 129
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV-------ERCPASEPLLMPISE 178
++ Q+ + K ++E + D L + L+ Y+ ER L P +
Sbjct: 130 ASMAQIIEHCKYGDEE---ISEDKLVKAGNLLIQEKYIVRAQSNMERADTPAVLFSPTQK 186
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
+ G RK GS ++ E + ++ A +P+ + D KE
Sbjct: 187 KTGK-RKAGSAGEER--ESKLVKLDNGAAGIPL-----------KEDGALKES------- 225
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
D + +R N F+ R + A+++ +L
Sbjct: 226 ----------------IDNEGSTWRVNTPAFLWDFRTAAIAQLMEDRFGPQTASLMRLLL 269
Query: 299 QATSSAEKKVKTKNSVPLSLSSIY------EEVIKSEAGRNMTLDHVRASLVQLGELSFV 352
+ ++ + P +L++ + + ++ + GRN L+ VR V +LS +
Sbjct: 270 -------RTIRNRALQPANLANGFIPSASVDAMLDASEGRNEDLNVVRTWEVLSEQLSAL 322
Query: 353 ---------------DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKS 397
+ ++ D ++ + + +ES+V K++ RIFRLL +
Sbjct: 323 CQDPAFKSVTKLMGGGSEGSTFKPDISLLMMELRQQILESIVEKKFTARGRRIFRLLLER 382
Query: 398 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQIL 455
+ LE+ + D + V KKDA IL K+ K ++ ++++ T +Q F LW V+ +
Sbjct: 383 -KYLESKTVWDLSMVPKKDANDILCKMLKAQFVRLQEVPRTIDHNTQRTFFLWYVDLPKV 441
Query: 456 WKHVLDEMFHAALNLSLRVSYELDREKE 483
V DEM+ +N L E RE E
Sbjct: 442 CSIVEDEMYR-TINFLLLKREEKKRECE 468
>gi|321259559|ref|XP_003194500.1| hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
gi|317460971|gb|ADV22713.1| Hypothetical protein CGB_E6680C [Cryptococcus gattii WM276]
Length = 584
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/516 (21%), Positives = 225/516 (43%), Gaps = 63/516 (12%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + LS ALL+L+Q N VQ+
Sbjct: 14 QIVAHSFGDVVSRVASTLLNRGRLPAPTIARLSGLSPSVASAALLILMQHNLVQSNGASV 73
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ D QY + + L R+R+ K L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGED-----EQYEFIVEECLLRLRWGKMLAITHERVDFLSMQVVKQLMIFGKLRVPDI 128
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK-- 189
+ + + + +++ +++ L+ H+++ + P L + ++ R SK
Sbjct: 129 I---SALGGDTDAIRAEAITGSVIALLQNHFLQ---TTAPELQILESDQIARRFAASKRR 182
Query: 190 ----SAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRK 243
+ I +EAA + M S+ VT V + +KN+ G+ +
Sbjct: 183 LAQAQGSALLSANDINNCHLEAAHDVRTMNESLRAVTRVLITKPKVDKNAKRRKTGKAVE 242
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-- 301
EL +Q V R N++ + +R+ + + GA V+ A+L A+
Sbjct: 243 ESDYEL-------KQDVHLRLNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLR 295
Query: 302 -SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL---- 346
+S K +T + P+ ++SI + S A ++ D VRA L L
Sbjct: 296 DTSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRAYLSVLAGED 353
Query: 347 -----GELSFVD---ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
G +F+ +++ Y ++FE + + + +V ++ G A R+ ++++S
Sbjct: 354 QLTGSGAGAFLQREGSTNPGYKVEFEAVCVKMREAMLSDLVREKLGDKAARVLAVVTRSS 413
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWK 449
+ ET I D + KDA IL +L K + +++ T A+ +++ LW
Sbjct: 414 KAFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWA 472
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
V+ + +L ++ N+ R E+D++K +L
Sbjct: 473 VDLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|403412256|emb|CCL98956.1| predicted protein [Fibroporia radiculosa]
Length = 519
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 123/551 (22%), Positives = 234/551 (42%), Gaps = 88/551 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFG L A V LL +G L ++ R++ L V+ A+LVL+Q N + Q
Sbjct: 13 IIRSHFGSLTAIVASVLLTRGRLPLSHLIRFSGLKPRTVRAAILVLVQHNLLW---HAQS 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
D + + N +L R+RF +++ Q F + +++Q +L+HG++ +
Sbjct: 70 DDDGEVLEVNITECLL------RLRFGRYVHQAEQLFGKAGADIIQLILDHGKMRPPDLI 123
Query: 133 DRAKSSEKEGNLVDLDSL-RETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
R + V+ ++ + L KL+ + Y++ P++ LL S + + + + A
Sbjct: 124 SRLSVYDP----VEAPAMYSQMLRKLIGSSYLK--PST--LLSHFSPRDKRIKYEAEEKA 175
Query: 192 KKIGEPETIE-QQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
K G P E +Q E A ++ + +E+ + +D
Sbjct: 176 KISGFPTAKELRQAKETA--------------QARLKREEEAPEQTS-----------MD 210
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA-HLDDGAANVLSAMLQATSSAEKKVK 309
E +R N E F +R+ I+H ++ VL A+L++T + +K++
Sbjct: 211 ET--------YFRINCEKFNIHIRN-NLIEHAAVERFNETTGLVLRAVLKSTEAKQKQLA 261
Query: 310 TKNSVPLSLSSI---YEEVIKSEAGRNMTLDH--VRASLVQ--LGEL------------- 349
S P S++++ E + G + L A+L++ LG L
Sbjct: 262 DTRSDPTSIANVAMQLPEEVDLSTGLILQLSKKPSAAALIKDYLGLLASADNPTPAGRAA 321
Query: 350 SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
SFV + ++F+ I Q +E++ +R+G D RI RLL +G++ E +IS
Sbjct: 322 SFVSMNGSKVQVEFDIIARRLQRRVLEAITRERHGDDGVRIVRLLLDTGKMDEK-QISKI 380
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAA 467
+ KD +L L D + ++++ + R F LW V+ Q +LD ++
Sbjct: 381 GMMANKDVRPLLSALSADSLISLQEVPKSADRNPTRTFYLWYVDLQKARSVLLDNLYKTL 440
Query: 468 LNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKV-----------RILLESSQMK 516
N+ R E + L +R+ QD + ++ R L +M+
Sbjct: 441 YNILFRKQAEEEESNVKAVLEKRQRSDVSQDEERLLTRIERETLVDWEKRRDKLTVLEMR 500
Query: 517 LDDAILLFHDF 527
+++A+ + HD
Sbjct: 501 IEEAVFIIHDL 511
>gi|270006046|gb|EFA02494.1| hypothetical protein TcasGA2_TC008189 [Tribolium castaneum]
Length = 506
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 109/494 (22%), Positives = 210/494 (42%), Gaps = 82/494 (16%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
V FT + + A+ Y + + +L +R+AK++ ++ ++F +C +++ L
Sbjct: 60 YRLV-TFTPNRNENVAN-------YTLQHERVLLMLRYAKYINLIKKKFGTECELIMEEL 111
Query: 121 LEHGRLTLKQM----FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPI 176
L+ T ++ +R K + V + +LRE + L+ A Y+ R +P
Sbjct: 112 LQRSYWTASELILKVIERLKKDHNKN--VTILALREKIFSLLAAQYLIR--------LPY 161
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236
S E+ P K ++ P TI+ F + V+S N
Sbjct: 162 SMEDKPVPSLVIKETEQFS-PPTID--------------FKQIALVQS----------NK 196
Query: 237 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
P + +Q V + NF+ F + +R K ++ D+ A +
Sbjct: 197 APVDS-------------LPDQGVYWTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRL 243
Query: 297 MLQATS-SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNM---------TLDHVRASLV-Q 345
+LQ + + N VP + I + V K +++ L+ + L+ Q
Sbjct: 244 LLQQMYIRTQPWAEVSNPVP--IVEIRDLVRKQATHQHLLAFFDQYVNVLEQDSSKLIRQ 301
Query: 346 LGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 405
GE A S+ I ++ E VE +V +++ A RIFRL+ KS + +E D+
Sbjct: 302 SGE-----AGGGSFQIFLKETFTQFAWETVEQIVLEKFDTKAARIFRLV-KSKQYIEPDQ 355
Query: 406 ISDTTFVEKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEM 463
I + K+A ++ Y+L ++ +L ++ L + F L+ N + + L+
Sbjct: 356 IQQLAMIPAKEAKRLSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLELC 415
Query: 464 FHAALNLSLRVSYE 477
+ N+ R ++E
Sbjct: 416 YKTLFNIMTRKNHE 429
>gi|340373723|ref|XP_003385389.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Amphimedon queenslandica]
Length = 529
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 111/499 (22%), Positives = 214/499 (42%), Gaps = 51/499 (10%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FG+LV +V LLR G +++ + + V +L+VLIQ
Sbjct: 1 MSQYQSVVCELILEESFGELVKEVGSYLLRNGGQKLKDLVKGLKKKKSDVIKSLIVLIQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVE-LVQGL 120
+ V + K+ T Y ++ NIL R F ++ + +E + E +++
Sbjct: 61 SLVSCISH----------KSATIYRMMTSNILCRGMFPQY-AVTGRELSGEIGEAIIEDF 109
Query: 121 LEHGRLTLKQMFDRA--KSSEKEGNLVDL---DSLRETLVKLVTAHYVERCPASEPLLMP 175
+ +G + ++ R K S+ ++ +L + ++ V LV ++R +
Sbjct: 110 ILNGHSCMSEVITRVVLKLSDTNQDIKELKLAEDVKNHFVNLVDMRLLQRVALA------ 163
Query: 176 ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES-DVGEKEKNSN 234
P+++ G + P+ + +P+E +V + G +
Sbjct: 164 ------PSKELGMTTPSHSLSPQD------KYVIPVELGASDIVAACSARKRGRASPDEG 211
Query: 235 NVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVL 294
+ P +K K D E + + + +V++ +F+ F R + + V +D AA V+
Sbjct: 212 ELPPSKKSKSD--EQGKDPLPPDATVLWYIDFQQFQCHYRDQAIVAGVNNRIDPIAAGVM 269
Query: 295 SAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFV 352
+L ++ NS P+ I+ +K + ++L + L L E F+
Sbjct: 270 KCLLSLSTQD----VDPNSYPIVGPEIFLLRLKDTLPQYLSLTDTDLEQYLTVLTEDGFI 325
Query: 353 D----ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISD 408
+ ASS SY I+F+K EI ++E VV +R+ R+FRLL R LE +ISD
Sbjct: 326 EKVGEASSGSYHINFKKCSEILCQSQLELVVRERFNDKHLRLFRLLCLKKR-LEQKQISD 384
Query: 409 TTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHA 466
+ K A +ILY L + ++ ++++ + A F L+ + + VL + A
Sbjct: 385 MALIPNKKAKEILYSLLAENFITLQEVPRSNDYAPSRTFHLFSIELNTTTRIVLQRCYKA 444
Query: 467 ALNLSLRVSYELDREKELL 485
NL E + K LL
Sbjct: 445 LGNLMTCRKEEGSKNKRLL 463
>gi|405121025|gb|AFR95795.1| hypothetical protein CNAG_02025 [Cryptococcus neoformans var.
grubii H99]
Length = 595
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/515 (21%), Positives = 224/515 (43%), Gaps = 64/515 (12%)
Query: 14 ITNH-FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
IT+H FGD+V++V LL +G L + R + LS +ALL+L+Q N VQ+
Sbjct: 15 ITSHAFGDIVSRVASTLLNRGRLPAPTIARLSGLSPPVALSALLILMQHNLVQSNGASAK 74
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ D QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 75 ETGED-----EQYEFIVEECLLRLRWGRMLAITHERVDFLSMQVVKQLMIFGKLRVPDII 129
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARKK 186
+ + + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 130 ---SALGGDADAIRAEAITGSIITLLHNHFLQ---TTAPELQILESDQIARRFAANKRRL 183
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRKH 244
+ I +EAA + S+ +T + + +KN+ KR+
Sbjct: 184 AQAQGSALLSANDITNCRLEAAHDVHTANESLRAITRILITKPKVDKNT-------KRRK 236
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT--- 301
++E A +Q V R N++ + +R+ + + GA V+ A+L A+
Sbjct: 237 TGRAIEETDYALKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLRD 296
Query: 302 SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL-GELS 350
+S K +T + P+ ++SI + S A ++ D VR L L GE
Sbjct: 297 TSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGEDQ 354
Query: 351 FVDA-----------SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGR 399
A ++ Y ++FE I + + +V ++ G A R+ ++++S +
Sbjct: 355 LTGAGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSSK 414
Query: 400 LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWKV 450
ET I D + KDA IL +L K + +++ T A+ +++ LW V
Sbjct: 415 AFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWAV 473
Query: 451 NRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+ + +L ++ N+ R E+D++K +L
Sbjct: 474 DLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|350417205|ref|XP_003491308.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus impatiens]
Length = 496
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/490 (20%), Positives = 207/490 (42%), Gaps = 79/490 (16%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K ++ HFG +V V E L + G ++ T L ++K +L VLI+ V
Sbjct: 7 KLCFSILFEHFGPIVQSVAEDLFKHGARPIGLIRHATHLPITKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
E+ +Y ++ +N+L +R+ +++ + +C +++ +L +G +T
Sbjct: 67 QAEK----------GMEYSLIVENVLLILRYPRYIFFVKSMCGNECEMILEEVLMNGYIT 116
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
+ AK+ +K +E+ P+ +P+ +E+ K
Sbjct: 117 ASEAI--AKTYKK----------------------IEQSPSDLQPSVPVLKEKFELLVKN 152
Query: 188 SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 247
+ +G TIE++ + + + + +T K N++
Sbjct: 153 QFLMRSLG---TIEERNEKCNFTLPDLNLAAIT--------KRIEGNDI----------- 190
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSS 303
+CG + + ++ NF+ F + R + I + LD+ A +L M T+S
Sbjct: 191 ---DCG---DSKIYWKVNFDRFTQDFRDQIIISAISRRLDENAGVLMRQLLILMYLRTAS 244
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----Y 359
E T N +PL+ I E V K + + L++ F+ DS Y
Sbjct: 245 WED---TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQY 299
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
S++ ++ + +E++V +R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 300 SVNMKEAFKQLTWTTLENIVMERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKH 358
Query: 420 ILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ Y L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R Y
Sbjct: 359 LTYTLLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREY 418
Query: 477 ELDREKELLN 486
E K +++
Sbjct: 419 EASSNKRMID 428
>gi|405945676|gb|EKC17433.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 487
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 109/492 (22%), Positives = 192/492 (39%), Gaps = 106/492 (21%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG+ V+ V + LL+K P + T L EQVK L +LIQQN V
Sbjct: 12 LLFQQFGEQVSVVGKYLLQKSPSPLHLISSETHLDTEQVKKILCILIQQNIV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK--- 129
F + +Y + IL+R+ F K++ + L++ +L+ G++ +
Sbjct: 64 -TFGQHKRGFIEYSIRTSEILNRLWFPKYIYCAKTLYGDAAELLLEDVLQRGQVQMSKVI 122
Query: 130 ----QMFDRA-----KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
Q F+ A K E +VD LV H+++RC L PI
Sbjct: 123 EVVMQRFNEALETSGKQKISESFVVD------KFSNLVRTHFLQRC------LDPIK--- 167
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
S+S K +G + E++ + LP D+ K K S++ P
Sbjct: 168 -------SESNKVVGLEVSGEEETL-YRLP--------------DLSRKRKKSHDDGPPA 205
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
KR +E + + + +R N E F + R + + + + +D A VL AML+
Sbjct: 206 KRSKSEVEGERPADDEGDGIFWRVNNERFHQMFRDQAIVQAISSKIDRSAGEVLRAMLRV 265
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS-- 358
+ + T + P+S++ I+ + K R + ++ SL+ +F+ DS
Sbjct: 266 SEVKTAGMATVTT-PISVTEIFNALPKDLMARPLLETYL--SLICDDSTNFLSKVGDSGG 322
Query: 359 --YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
YSI +IE D + K+
Sbjct: 323 GMYSISILSVIE---------------------------------------DFVMISAKE 343
Query: 417 APKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
A +LY L+ + ++ ++ T A F L+ VN Q + VL+ + A N ++
Sbjct: 344 AKDLLYTLFSENFITTTEISKTPDHAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKK 403
Query: 475 SYELDREKELLN 486
E++ + LL+
Sbjct: 404 ETEVNEHRRLLD 415
>gi|452822521|gb|EME29539.1| DNA-directed RNA polymerase III subunit C3 [Galdieria sulphuraria]
Length = 524
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 124/566 (21%), Positives = 233/566 (41%), Gaps = 104/566 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++ A++ L G + + + +++S +VK A+ VL+QQN + A+
Sbjct: 10 IVKFHFGEVYAQIFWNLSTYGACGFKELVKLSKVSAGEVKQAVAVLLQQNVIFAYEKGSG 69
Query: 73 DGFADGP---KANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
F + P +LF+ L R+RF +F+ + + + + L Q LLE G
Sbjct: 70 RVFRNKPWKLDGEEGVEILFEAKVEEALLRLRFPRFIQLCREYYGETGEVLCQILLERGL 129
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
L+ + D + +G L + L K++ +V C A +
Sbjct: 130 LSFE---DVIQVGVTQGRLKSSAAADSVLHKMIEEKFV--CLAGYEYY-----------E 173
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHD 245
K K V++V S G K K S + P R+ D
Sbjct: 174 KNEKD----------------------------VSSVSS--GMKRKRSTDDAPSPAREAD 203
Query: 246 VLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA---ANVLSAMLQATS 302
+ + + Q +YR + R LRH+ D V + + + A+ AML
Sbjct: 204 MSQRSSETLRFVQLELYRISTSFLNRILRHEAFSDLVVHTVRENSRMVASCFRAMLSLIR 263
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASL--VQLGELSFVDASS-D 357
++ + + SVP+ +I +E+ + +T+D + +L +Q +F+
Sbjct: 264 KEDECFEGEQSVPVQRDAILDEIRNQMPSSSELVTVDQLNEALNVLQDDRYNFISGIGIS 323
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG-----RLLETDKISDTTFV 412
S+ ++ + ++ + E ++ KR+G R++RLL G +LLE + TT
Sbjct: 324 SFVVEIRMMRQLLKQRATEHLILKRHGTSGLRVYRLLLDKGALEQRQLLEFAMLPGTTAR 383
Query: 413 EKKDAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 470
EK LY +++DGY+++ ++ F LW V+ ++ +VL + A LN+
Sbjct: 384 EK------LYAMFRDGYVVVNEIPSSSDYKSSRSFFLWSVDVSNVFTNVLCHAYKATLNM 437
Query: 471 SLR------------------VSYELDR---EKELL---------NLPADKRTGPLQDRY 500
+R VS EL+ ++E+L N+ + L++R
Sbjct: 438 LIRMKNLHVEYSRLLGSNLYCVSEELESVPIQQEILERHISSQSSNMNYSCASLELKERL 497
Query: 501 NRIRKVRILLESSQMKLDDAILLFHD 526
++R+ L E S ++LD I+ D
Sbjct: 498 EKLRQRMALYEVSILRLDKNIMCIRD 523
>gi|301620366|ref|XP_002939548.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Xenopus
(Silurana) tropicalis]
Length = 471
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/474 (22%), Positives = 201/474 (42%), Gaps = 71/474 (14%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ H+G++V +V L+R G + + T S +QVK AL VLIQ N V ++
Sbjct: 12 LLQEHYGEIVDRVGTFLIRTGNQPLRVIANETGTSLDQVKKALCVLIQHNLVTYQLNKR- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
GF + Y D L +R+ +++ + +V+ LL +G++TL
Sbjct: 71 -GFVE-------YKAHVDRFLRILRYPRYIYTAKTLYGDTGELIVEELLLNGKMTLSAAV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + + ++ + T L H+V+RCP +
Sbjct: 123 KKVADRLTETMEGNQSMEYSEVSATFTHLADTHFVQRCPTVQ-----------------E 165
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVE-SDVGEKEKNSNNVTPGEKRKHDVL 247
K A + G P + L M +V + + G++ ++S++ G + K
Sbjct: 166 KDATE-GRPP------LAPTLQMNEKEMYIVPKLNMTGRGKRRRSSDDDDGGSQAKRPKK 218
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
E ++ + + V ++ N E F + R + I V +D ++ ++ ML+ + +
Sbjct: 219 EAED---SQDDGVYWQVNTERFHQHFRDQAIISAVSNKMDQTSSEIVRTMLRMS-----E 270
Query: 308 VKTKNSV----PLSLSSIYEEVIKSEAGRNMT---LDHV-----RASLVQLGELSFVDAS 355
V T +S PLS + I+ + G NM+ LD + ASL Q+G
Sbjct: 271 VTTSSSAAYTQPLSSNEIFRSL---PTGYNMSKQVLDQILVIFCPASLHQIGSCR----G 323
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
++S+S ++ ++ R+G RIFRLL + R LE ++ D V K
Sbjct: 324 AESFSCT-RPGGDLCLTPPPLTLC--RFGSRCARIFRLLLRK-RHLEQKQVEDFAMVPAK 379
Query: 416 DAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467
+A ++LYK+ + ++++ T A F L+ VN + +L +
Sbjct: 380 EAKEMLYKMLFQNLVSLQEIPKTPDHAPSRTFYLYTVNTLPCARMLLQRCYKGG 433
>gi|134112521|ref|XP_775236.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257888|gb|EAL20589.1| hypothetical protein CNBE5090 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 572
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/516 (20%), Positives = 222/516 (43%), Gaps = 63/516 (12%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ + FGD+V++V LL +G L + R + L+ +ALL+L+Q N VQ+
Sbjct: 14 QIVAHAFGDIVSRVASTLLNRGRLPAPTIARLSGLTPPVALSALLILMQHNLVQSNGASA 73
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ D QY + + L R+R+ + L I + D +++V+ L+ G+L + +
Sbjct: 74 KETGED-----EQYEFIVEECLLRLRWGRMLAITHERVDFLAMQVVKQLMIFGKLRVPDI 128
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE------GPARK 185
+ + + +++ +++ L+ H+++ + P L + ++ R+
Sbjct: 129 ISGLGG---DADAIRAEAITGSIIALLQNHFLQ---TTAPELQILESDQIARRFAANKRR 182
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSV--VTNVESDVGEKEKNSNNVTPGEKRK 243
+ I +EAA + S+ +T V + +KN+ KR+
Sbjct: 183 LAQAQGSALLSANDITNCRLEAAHDVRTANESLRAITRVLITKPKVDKNT-------KRR 235
Query: 244 HDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-- 301
++E +Q V R N++ + +R+ + + GA V+ A+L A+
Sbjct: 236 KGGKAIEESDYVLKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDASLR 295
Query: 302 -SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL-GE- 348
+S K +T + P+ ++SI + S A ++ D VR L L GE
Sbjct: 296 DTSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILAGED 353
Query: 349 ----------LSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
L +++ Y ++FE I + + +V ++ G A R+ ++++S
Sbjct: 354 QLTGTGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVTRSS 413
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFLLWK 449
+ ET I D + KDA IL +L K + +++ T A+ +++ LW
Sbjct: 414 KAFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYHLWA 472
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
V+ + +L ++ N+ R E+D++K +L
Sbjct: 473 VDLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 508
>gi|348684862|gb|EGZ24677.1| hypothetical protein PHYSODRAFT_487168 [Phytophthora sojae]
Length = 600
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 141/318 (44%), Gaps = 25/318 (7%)
Query: 232 NSNNVTPGEKRKHDVLELDECGV-ADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
+ + T GE D D G DE+S+V+R +R LRHK CI +++ A
Sbjct: 286 SGDGTTGGETSGEDAP--DGSGAHTDERSLVWRFGVTQLLRDLRHKACIRFATENINAVA 343
Query: 291 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYE-----EVIKSEAGR--NMTLDHV---- 339
+++AMLQ +S E++ S P+S +++ + + EA + L+++
Sbjct: 344 GVIVAAMLQHSSPREREKDEPTSFPVSARDLFDMESVKKALPPEANNPWRLLLNYIMVMC 403
Query: 340 ---RASLVQLGELSFVDASSDS-----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIF 391
++++ + +F + + Y + +KI+E Q + + +YG + RI
Sbjct: 404 RDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIV 463
Query: 392 RLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWK 449
RLL + R LE I + + DA LY+L+ D L M+++ F W
Sbjct: 464 RLLMEK-RQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWS 522
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRIL 509
V+ + + + + + L R +E + KEL+ D+++++ +
Sbjct: 523 VDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDR 582
Query: 510 LESSQMKLDDAILLFHDF 527
L+ + + LD ++L+ DF
Sbjct: 583 LDRAIIHLDGMLMLYRDF 600
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF 109
Q+K ALL L+Q N + P A G Y + L+R+RF KF+ + + F
Sbjct: 2 QIKCALLKLLQHNVLDV----TPVAGARGGAPTVAYNINVQEALYRLRFPKFIELAKETF 57
Query: 110 DQQCVELVQGLLEHGRLTLKQMFD 133
Q +++ +L GR+ + Q +
Sbjct: 58 GVQGEVVMEEMLVQGRVRMDQSLE 81
>gi|328785682|ref|XP_394638.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Apis
mellifera]
Length = 496
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 101/492 (20%), Positives = 209/492 (42%), Gaps = 93/492 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKHGLVKYRQTEK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++
Sbjct: 71 ---------GIEYILIYERVLNILRYPKYMFFVKTNCGNEAEMMLEQVLKNGYITASEVI 121
Query: 133 DRA-KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ K E+ ++ + L+E L+ ++ R +EEEG +++
Sbjct: 122 IKTYKRMEQSPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------NEEEGNSKR---- 170
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+ LP + D+ K LE
Sbjct: 171 ----------------DFTLP------------DLDLAAISK--------------YLEG 188
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSSAE 305
D C + D+ + + N + F + R + + + LD A +L M T+S E
Sbjct: 189 DNCNLKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWE 246
Query: 306 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTL--DHVRASLVQLGELS--FVDASSDS--- 358
T N +P + E+ + N L H+ L + E S F+ DS
Sbjct: 247 D---TSNPIPFA------EIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGG 297
Query: 359 -YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
YS++ ++ +E++V +R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 298 QYSVNMKEAFNQLAWASLENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIPAKEA 356
Query: 418 PKILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ Y L ++ YL M+++ V+ A F L+ ++ ++ + ++ +HA N+ R
Sbjct: 357 KHLTYTLLQENYLQMQEIKKSGVSAAPIKTFFLFHIDLNLVVRMEIEHCYHALYNIMQRR 416
Query: 475 SYELDREKELLN 486
YE++ K +++
Sbjct: 417 EYEVNSNKRMID 428
>gi|299753734|ref|XP_001833454.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
gi|298410438|gb|EAU88388.2| hypothetical protein CC1G_05154 [Coprinopsis cinerea okayama7#130]
Length = 505
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 190/453 (41%), Gaps = 46/453 (10%)
Query: 42 RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKF 101
RY+ L V+ +LVLIQ N V +E Y V D L R+R+ ++
Sbjct: 6 RYSGLRPRTVRGCILVLIQHNIVWHVQSE---------GEQEMYEVNLDECLMRLRYGRY 56
Query: 102 LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAH 161
+ + F Q ++VQ +++HG+L +F E + L ++ L KLV+
Sbjct: 57 IFQAEKLFGQAGADIVQIIMDHGKLRPPDIFALLHVHESKA----LAQHKQALYKLVSGS 112
Query: 162 YVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTN 221
Y++ AS P +S + + + + K +G P +Q+ EA E R +
Sbjct: 113 YLK---ASTP-RSHVSPRDRLIQYEIEEKKKIVGFPTA--KQLREAKEVAEG-RLKREDD 165
Query: 222 VESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDH 281
+G K K + T K LE +E V DE V +R N E F +R++ ++
Sbjct: 166 ESEKIGLKRK-AKEQTGHRSSKKKALE-EETVVDDE--VFFRVNCERFNVHIRNEIIVNA 221
Query: 282 VRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSE--------AGRN 333
+ + A +V+ A ++AT A + S P+S+S++ + + R
Sbjct: 222 AKDRYNSQAGSVMQAAIKATEGANPSLSDARSDPVSVSNVIMLLTDDRELSSGLVYSSRK 281
Query: 334 MTLDHVRASLVQL----------GEL-SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKR 382
+ L V L G+ +F+ +D+E I + +E++ ++
Sbjct: 282 VPLATCVKDYVGLLAAADNPTPAGKAGAFLSFGGSKVQVDYETISRRLRRRLLEAMAQEK 341
Query: 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ 442
+G + RI RLL +G++ E +IS + KD +L L D + +++ + R
Sbjct: 342 HGPEGVRIIRLLLDTGKMDEK-QISKVVLMASKDVRPLLAALSADSLVSTQEVPKSADRN 400
Query: 443 S--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
F LW V+ + +L + N+S R
Sbjct: 401 PTRTFYLWYVDLYKAYSSLLGNAYKTLYNISAR 433
>gi|449510977|ref|XP_004175526.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like, partial [Taeniopygia guttata]
Length = 636
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 207/496 (41%), Gaps = 59/496 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG++V KV LLR GP + + T L +QVK AL VL+Q +
Sbjct: 12 LLRENFGEIVEKVGNSLLRTGPRPLRLLVGDTGLLPDQVKKALCVLLQHGLAR------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK--- 129
+A P+ +Y +L +R+ +++ + LV+ LL HG L +
Sbjct: 65 --YAPQPRGPVEYEARSRRVLRLLRYPRYIYTAKTLYGDPGELLVEELLLHGHLPMSAAV 122
Query: 130 -QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
++ +R + ++G +D+ + T V+L H+++RCPA L + + AR
Sbjct: 123 ARVAERLTETMEDGKSMDVSEVSATFVRLADTHFIQRCPAPPALPPEVPPD---ARVPPP 179
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR-KHDVL 247
A GE + RF V G++ + + GE R K
Sbjct: 180 APA---GE---------------DKDRFLVPRLGLGGKGKRRHSCDEEEEGEHRAKRQKQ 221
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
E + + ++ N E F + R + + V + +D ++ V+ ML+ S
Sbjct: 222 EGGSSEPPPDDGIYWQVNLERFHQHFRDQALVSAVASRMDQTSSEVVRTMLR-MSEVTTA 280
Query: 308 VKTKNSVPLSLSSIYEEVIKSEAGRNMT---LDHVRASLVQLGELSFVDASSDS----YS 360
++ PLS + I+ + AG N++ LD A L L FV + DS Y+
Sbjct: 281 SGASHTQPLSSNEIFRSL---PAGYNISKAVLDQYLALLAD-DPLEFVGKAGDSGGGTYT 336
Query: 361 IDFEKIIEIAQNEEVESVVS---------KRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+ + +++ + R+G RIFRLL + + LE ++ D
Sbjct: 337 VSIYNGLSSLWXAQIKDFLPXIPHPPSPLPRFGSRCARIFRLLLRK-KHLEQKQVEDFAM 395
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALN 469
+ K+A +LY++ + + ++++ T A F L+ VN + +L + + N
Sbjct: 396 IPAKEAKDMLYRMLSENLVALQEIPKTPDHAPSRTFYLYTVNVMAAARMLLHRCYQSVAN 455
Query: 470 LSLRVSYELDREKELL 485
L R +E+ K LL
Sbjct: 456 LMERRHHEMRENKRLL 471
>gi|195445897|ref|XP_002070533.1| GK10977 [Drosophila willistoni]
gi|194166618|gb|EDW81519.1| GK10977 [Drosophila willistoni]
Length = 523
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 101/492 (20%), Positives = 207/492 (42%), Gaps = 77/492 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG++V V CL T + T+L ++V AL VLI+ V +F Q
Sbjct: 12 ILKQCFGNVVESVANCLFSATTRTLSQIVSTTKLPRKEVCVALAVLIRFRLV-SFEPSQT 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT-LKQM 131
+ F +Y + ++I+ +R +++ ++ ++ + + L+ G T + ++
Sbjct: 71 NPFL------PEYSLRREDIIFLLRHPRYIYLMQNKYGNVGASITEELIHSGSHTHVNKV 124
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
+ E G + ++ R T +++++ HY+
Sbjct: 125 LLNCLADEDVGT-ANAETHRNTFLQMISDHYI---------------------------- 155
Query: 192 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-------NVTPGEKRKH 244
I PE IE + ++P RF +SD E ++ N ++ GE
Sbjct: 156 --IKMPELIEGDDQDESVP----RF------QSDECEYFRHPNIDLHLLSMISKGEASLS 203
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
D + E ++++ N++ F + R +D ++ L D AA S +L +
Sbjct: 204 D---------SKESNMMWTLNYDRFHQDFRDAIMVDSIKRKLGDSAAECFSFILTLIYNT 254
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDS 358
+ K S ++ I + + + ++ LD SL+ L F+ D +
Sbjct: 255 TDPWQRKTSNQITFMEIKQTIERKSNNLDLIKYLDQY-ISLLTDDSLGFLRKVGDMGNGQ 313
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y +D E+ E +ESV+++R+G A RIFR++ + + +E + + + K+A
Sbjct: 314 YLVDMERAFESLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAK 372
Query: 419 KILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ Y L+++ ++ ++ + G + F L++V ++ + +LD F A N R
Sbjct: 373 SLAYNLFQEQFIHVKVIKKPGGGSNGPAKAFYLYQVKQKDTVRMLLDISFKALYNAIERS 432
Query: 475 SYELDREKELLN 486
SYE K L++
Sbjct: 433 SYEKFEHKGLID 444
>gi|157116201|ref|XP_001652793.1| DNA-directed RNA polymerase III, 62-kS-subunit, putative [Aedes
aegypti]
gi|108876581|gb|EAT40806.1| AAEL007496-PA [Aedes aegypti]
Length = 507
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 104/482 (21%), Positives = 197/482 (40%), Gaps = 66/482 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFGD+V V + L T V + T LS +V AL +L++ QP
Sbjct: 12 IVQQHFGDVVRMVADDLFAAVAKTLSMVIKSTGLSKSEVCKALAILLKF----GLARHQP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ T+Y++ ++ +L +R+ +F+ ++ ++ +C L + LL G T +
Sbjct: 68 NKAGSA----TEYILDYEKVLMVLRYPRFVHLIQTKYGPECATLTEELLRAGCQTASYVI 123
Query: 133 DR--AKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKS 190
+ A S K+ N + RE LV +Y R A +P
Sbjct: 124 LKGTAISDVKDKNTIT--KFREKFSDLVAKNYFIR--APDP------------------- 160
Query: 191 AKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELD 250
K I +E E+A N + + RK L+
Sbjct: 161 -KPIDPSNELEMLDYESA-----------------------NLFQMPELDLRKLLDLQEG 196
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKT 310
+ A ++ + + N E F R I+ +D A L +LQ S K +
Sbjct: 197 KTTKAPDEGIHWLVNLEKFHLDFRDSIMINAAERLIDSSAGECLKFLLQLMYSRTKPWEM 256
Query: 311 KNSVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELS-FVDASSDSYSIDFEKII 367
++ P+ + + + K M LD A + + +S F D ++++ +KI+
Sbjct: 257 VSN-PIPMVELKQLCEKKSNNLEMIKFLDQYVAVIESVNFVSKFGDTGGGQFTVNMKKIL 315
Query: 368 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 427
E +E+V++++YG A RIFR++ + + +E + I + K+A ++ YKL ++
Sbjct: 316 EQLTWSCIENVITEKYGSKAARIFRVI-RMKKYIEQEDIQKEAMIPAKEAKQLTYKLLEE 374
Query: 428 GYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
+L ++ TG + F L+ VN+ + +L+ + A N R +++ K
Sbjct: 375 NFLQIQTFRKTGGGNAGAPKSFFLFYVNQAQIVSMLLEICYKALYNSITRSTHDKTVNKR 434
Query: 484 LL 485
L+
Sbjct: 435 LI 436
>gi|380020291|ref|XP_003694023.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC3-like [Apis florea]
Length = 496
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 103/492 (20%), Positives = 207/492 (42%), Gaps = 93/492 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V V E L + G ++ T L ++K AL VLI+ V+ TE+
Sbjct: 12 ILFEHFGQIVQCVGEDLFKYGAKPLVLIRHTTHLPVTKIKEALCVLIKYGLVKYRQTEK- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+Y+++++ +L+ +R+ K++ + + +++ +L++G +T ++
Sbjct: 71 ---------GMEYILIYERVLNILRYPKYMFFVKTNCGSEAEMMLEQVLKNGYITASEVI 121
Query: 133 DRA-KSSEKEGNLV--DLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ K E+ ++ + L+E L+ ++ R SEEEG ++
Sbjct: 122 IKTYKRMEQLPCIIQPSIPVLKEKFELLIKYQFLMRSTNK-------SEEEGNSK----- 169
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+ LP + D+ K LE
Sbjct: 170 ---------------CDFTLP------------DLDLAAIAK--------------YLEG 188
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSSAE 305
D C + D+ + + N + F + R + + + LD A +L M T+S E
Sbjct: 189 DNCNLKDK--IYWEINIDRFTQDFRDQIIVSSISKRLDKNAGELMRRLLFLMYLRTASWE 246
Query: 306 KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTL--DHVRASLVQLGELS--FVDASSDS--- 358
T N +P + E+ + N L H+ L + E S F+ DS
Sbjct: 247 D---TSNPIPFA------EIKDAVKKLNYPLLTQHLDQYLRLIEEDSSQFLKRVGDSGGG 297
Query: 359 -YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
YS++ ++ +E++V +R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 298 QYSVNMKEAFNQLAWASLENIVMERFGSKAARIFRLV-RARKYIEQEQIQQLAMIPAKEA 356
Query: 418 PKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ Y L ++ YL M+ K V+ A F L+ ++ ++ + ++ +HA N+ R
Sbjct: 357 KHLTYTLLQENYLQMQEXKKSGVSAAPIKTFFLFHIDINLVVRMEIEHCYHALYNIMQRR 416
Query: 475 SYELDREKELLN 486
YE++ K +++
Sbjct: 417 EYEVNSNKRMID 428
>gi|340715006|ref|XP_003396012.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Bombus terrestris]
Length = 496
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 96/490 (19%), Positives = 203/490 (41%), Gaps = 79/490 (16%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67
K +++ HFG +V V E L + G + T L ++K +L VLI+ V
Sbjct: 7 KLCFSILSEHFGQIVQSVAEDLFKHGARPIGLIYHSTHLPIIKIKESLCVLIKHGLVTYN 66
Query: 68 TTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
TE+ +Y ++ +N+L +R+ +++ + +C + + +L HG +T
Sbjct: 67 QTER----------EMEYSLIVENVLLILRYPRYIFFVKTICGNECEMIFEEVLMHGYIT 116
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKG 187
+ + T +E+ P+ +P+ +E+ K
Sbjct: 117 ASEAITK------------------------TYKKIEQSPSDLQPSVPVLKEKFELLVKN 152
Query: 188 SKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 247
+ + +T+E++ + + + +T K N++
Sbjct: 153 QFLMRSL---DTVEERNEKCDFTLPDLNLGAIT--------KRIEGNDI----------- 190
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA----NVLSAMLQATSS 303
+CG + + ++ NF+ + R + I + LD+ A +L M T+S
Sbjct: 191 ---DCG---DSKIYWKVNFDRLTQDFRDQIIISAMSRRLDENAGALMRQLLILMYLRTAS 244
Query: 304 AEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS----Y 359
E T N +PL+ I E V K + + L++ F+ DS Y
Sbjct: 245 WED---TSNPIPLT--EIKEAVRKVDCPLLIQYLDQYLRLIEEDSSQFLKRVGDSGGGQY 299
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
S++ ++ + +E++V++R+G A RIFRL+ ++ + +E ++I + K+A
Sbjct: 300 SVNMKEAFKQLVWTTLENIVTERFGSKAARIFRLV-RNRKYIEQEQIQQLAMIPAKEAKH 358
Query: 420 ILYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ Y L ++ YL ++++ V+ A F L+ ++ ++ ++ +HA N+ R Y
Sbjct: 359 LTYTLLQENYLQIQEIKKSGVSAAPIKTFFLFHIDLNLVVHMEVEHCYHALYNIMQRREY 418
Query: 477 ELDREKELLN 486
E K +++
Sbjct: 419 EASSNKRMID 428
>gi|449547618|gb|EMD38586.1| hypothetical protein CERSUDRAFT_153553 [Ceriporiopsis subvermispora
B]
Length = 574
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 130/587 (22%), Positives = 232/587 (39%), Gaps = 103/587 (17%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
+I +HFG L V +L +G L ++ R++ L V+ A+LVL+Q N +
Sbjct: 12 QIIRSHFGPLTGAVAGVILVRGRLALPHIVRFSGLKPRTVRAAVLVLVQHNLLW---HSH 68
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
DG + + N + L R+R+ +++ + F + E+VQ +L+HG+L
Sbjct: 69 VDGEGEMLEVNVE------ECLMRLRYGRYVAQAEELFGKAGSEIVQLVLDHGKL----- 117
Query: 132 FDRAKSSEKEGNLVDLDSLR-ETLVKLVTAHYVERCPASEP------------------- 171
+ E L D ++ E L + ++Y+ P + P
Sbjct: 118 ----RPPEIISQLSVYDPIKGEYLARCFGSYYI---PVAAPAIYSQALHKLVDAFYLKPS 170
Query: 172 -LLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKE 230
+L S + R + + AK G P + +++ EA EA R +G K
Sbjct: 171 TVLSHQSPRDRQIRYEKEEKAKISGFPTS--KELREAKETAEA-RLKREEEEAEQIGMKR 227
Query: 231 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
K + KRK + + V +R N + F +R+ + ++ A
Sbjct: 228 KAKDQPHRPSKRKAVEED------VVAEEVYFRVNCDRFNVHVRNDIIVTAAVERFNESA 281
Query: 291 ANVLSAMLQATSSAEKKVKTKNSVPLSLSSIY----EEV--------IKSEAGRNMTLDH 338
VL A L+AT +K V S P S+++I EEV S+ NMT+
Sbjct: 282 GLVLRAALKATEGKQKSVSDIRSDPTSVANISMQLSEEVDLSAGLALPSSKKPSNMTM-- 339
Query: 339 VRASLVQLGEL----------SFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAY 388
+R L L SF+ + ++FE I + +E++ +R+G +A
Sbjct: 340 LRDFLGILASADNPTPSGRAASFISFTGSKVQVEFEIIGRRLRQRVLETIARERHGDEAV 399
Query: 389 RIFRLLSKSGR---------------LLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433
RI RLL +G+ LL +IS + KD +L L D + ++
Sbjct: 400 RIIRLLLDAGKMDEKQASGGAIYKGVLLIAVQISKVGMMANKDVRPLLSALSADTLISLQ 459
Query: 434 KLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK 491
++ + R F LW V+ Q + +L ++ N+ R E + L +
Sbjct: 460 EVPKSADRNPTRTFYLWYVDLQKAYSVLLRNLYKTLYNIVARREAEAEEPTVKAVLEKRQ 519
Query: 492 RTGPLQDRYNRIRKV-----------RILLESSQMKLDDAILLFHDF 527
R+ QD + + +V R L Q+++++A+ + D
Sbjct: 520 RSDVSQDEEHLLTRVEREVLAEWDKKREKLAVLQLRVEEAVFILRDL 566
>gi|392574302|gb|EIW67439.1| hypothetical protein TREMEDRAFT_74583 [Tremella mesenterica DSM
1558]
Length = 550
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 105/510 (20%), Positives = 220/510 (43%), Gaps = 65/510 (12%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
H++ FG +V+++ L+ +G LT + R + LS ALL+L+Q + VQ+ + E
Sbjct: 14 HLVRQAFGTVVSRIASTLMNRGRLTCPTLARLSALSRSTTMAALLILMQHHLVQS-SGEP 72
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
PD +D +A Y D L R+R+ + L + + E+++ L+ +GRL ++
Sbjct: 73 PD--SDKEEA---YEFNMDECLLRLRWGRILAMTLDKLGPSATEVIRSLMLYGRLAKDEI 127
Query: 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSA 191
N++ ++ E + LV H+++ P E G R +
Sbjct: 128 IHACGGGHGASNIM---AIEEATLLLVRHHFIQ----------PTHPEMGIIRADAEE-- 172
Query: 192 KKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEK-------NSNNVT----PGE 240
++ + + + + + N S G +E +SNN+ P
Sbjct: 173 ----RRFLTHRRRLYSTKGLAYTTANDLANARSQAGWEESERRAALVSSNNIIVLPEPHP 228
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K+K ++E + ++ ++ R N++ + +R + + VR L+ GAA V+ A+L +
Sbjct: 229 KKKRKLVEPE---LSLRPNIALRINYDRYGVLIRDELIVRAVRDRLNVGAAEVMRAVLTS 285
Query: 301 TSSAEKKVKTKNS-VPLSLSSIYEEVIK----------SEAGRNMTLDHVRASL-VQLGE 348
+ E + + V +S + + +++ + + + ++ D V+ L V GE
Sbjct: 286 CLNDESALADPRTLVHVSANDVIDKIPEQACPFIFAGMAGSSKSSLADVVKQYLRVLSGE 345
Query: 349 ------LSFVDASSDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
SF+ S Y ++ E I + + +V ++ G + R+ ++ +
Sbjct: 346 DQVASGGSFLSTEGTSLNPMYKVELEGICSKLRAALMNELVVQKLGDEGSRVLAVVVTAN 405
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYL---LMEKLVVTGARQSQFLLWKVNRQIL 455
++ ET + D + + A L +L K + M +++ GA LW ++
Sbjct: 406 KVSET-TVRDCAMIPLRSARFYLSELQKLSLVETQEMPRVMGKGAMSKDAHLWSIDLARA 464
Query: 456 WKHVLDEMFHAALNLSLRVSYELDREKELL 485
+ ++L ++ N+ LR E+DR+K +L
Sbjct: 465 YTYILSSVYKTLGNIELRKQTEVDRKKVVL 494
>gi|324510541|gb|ADY44409.1| DNA-directed RNA polymerase III subunit RPC3 [Ascaris suum]
Length = 535
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 121/560 (21%), Positives = 231/560 (41%), Gaps = 94/560 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
V ++ +HFG LVA + LL R +++ +K +L++L Q N V
Sbjct: 23 CVEILEDHFGGLVASLGRVLLCGEATLPIIALRLRKVNVGLIKRSLMILEQHNIVTFRMD 82
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK 129
++ ++ P +++L R A+ ++ + + + + L+ GRL+
Sbjct: 83 DRRVVYSIKP----------EDVLRLARSARCSFLVKTLYGEVAEAICEELVCQGRLSCS 132
Query: 130 QMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSK 189
+ R S L ++ +L A V RCP L+ + + P +K +
Sbjct: 133 ECLRRVSSRLD----TPLSEVKTKFARLAEAQLVIRCP-----LVEAEDYDCPIFEKQT- 182
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
+P + ++ A V + N ++ + KRKH E
Sbjct: 183 ------DPFIMPDLILSA------------------VKQNTTNRDSSSTTRKRKH---EG 215
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
D G D +++R N F R +R + +D V + +D A + + +E K
Sbjct: 216 DGSGDVD-ADILWRLNHPRFERYMRDEMVVDAV-SKIDSFGAECVKTIRTLLKISELKAD 273
Query: 310 TKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELS------FVDASSDSYSI 361
+K + L +S ++VI++ M L+ + +L + + S D++ Y +
Sbjct: 274 SKAAASLPIS--VQDVIRAANTNEMGLERNDIEVALRIMSDDSDQIVRRIGDSAGGLYVV 331
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
DFEK I + +ES++ +++ A RIFRLL + G LE ++I + K++ ++
Sbjct: 332 DFEKAISVQCQSNIESIIREKFDSMAVRIFRLLLQKGH-LEEEQIEKLAMLSSKESKELC 390
Query: 422 YKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
Y L + ++ + + T A F L+ V+ L + + D + N+ +R +E
Sbjct: 391 YTLLDEHFISVRHVAKTNDFAPARTFCLYHVDLSDLAQLLYDNICKTLRNVIIRRRHETK 450
Query: 480 REKELL-----------NLPAD---------KRTGPLQDRY---------NRIRKVRILL 510
K L+ N+ AD ++ G ++D Y R R+ + L
Sbjct: 451 EHKMLIERQLKMESIIANIEADASLDEASKKQQIGEVEDMYLTAADRSTLERYRRGQNDL 510
Query: 511 ESSQMKLD-DAIL--LFHDF 527
+M+L+ DA+L LF DF
Sbjct: 511 LCHEMELNHDALLFSLFIDF 530
>gi|170048122|ref|XP_001851545.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
gi|167870301|gb|EDS33684.1| DNA-directed RNA polymerase III subunit C [Culex quinquefasciatus]
Length = 507
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 96/480 (20%), Positives = 193/480 (40%), Gaps = 62/480 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFGD+V V + L T + + EL+ +V A+ +L++ + QP
Sbjct: 12 IIQQHFGDVVRMVADDLFSGVAKTLPMIVKSCELTKSEVCKAIAILLKF----SLARHQP 67
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ T+Y++ ++ +L +R+ +++ ++ ++ + L + LL G T +
Sbjct: 68 NKAGTA----TEYILEYEKVLMILRYPRYVHLIQTKYGHESAILTEELLRAGCQTASCII 123
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+A + + RE LV ++ R P
Sbjct: 124 LKATAISDAKGKDTITKFREKFSDLVAKNFFIRAP------------------------- 158
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
EP+ ++Q AL E + + ++ RK L+ +
Sbjct: 159 ---EPKPVDQNTDLLALEYEDPKLFQMPELDL-----------------RKLLDLQEKKT 198
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A ++ + + N E F R I V +D AA +LQ + K + K
Sbjct: 199 TKAPDEGIHWLINLEKFHLDFRDTIMISSVERLIDPTAAECFKHLLQLMYTKTKPWE-KV 257
Query: 313 SVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELS-FVDASSDSYSIDFEKIIEI 369
S P+S++ + + K + LD A L LS F D Y+++ + I E
Sbjct: 258 SNPISMAELKQLCEKKSDNLELLKFLDQYVAVTESLNYLSKFGDMGGGQYTVNMKTIFEQ 317
Query: 370 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 429
+E++++++YG A RIFR++ + + +E + I + K+A ++ YKL ++ +
Sbjct: 318 LTWNCIENIITEKYGSKAARIFRVI-RLKKYIEQENIQKEAMIPAKEAKQLTYKLLEENF 376
Query: 430 LLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
L ++ G + F L+ VN+ + +L+ + + N R +++ K L+
Sbjct: 377 LQIQAFRKPGGGNAGAPKSFFLFYVNQMQIVSMLLEICYKSLYNSITRSTHDKTVNKRLI 436
>gi|393220230|gb|EJD05716.1| hypothetical protein FOMMEDRAFT_103906 [Fomitiporia mediterranea
MF3/22]
Length = 546
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 179/426 (42%), Gaps = 72/426 (16%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ HFG L AKV LL +G LT + R+T L + A+L+L+Q N +E
Sbjct: 11 VQIVHAHFGPLTAKVASALLTRGRLTLPQIVRFTALRPRTARAAVLILVQHNLAWHSQSE 70
Query: 71 QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT--- 127
+ DG + + NT+ +L R+RF F+ Q F E+V +L+HG+L
Sbjct: 71 E-DG--EMIEFNTEECLL------RLRFGTFVWQADQLFGSAAAEIVSLVLDHGKLRPPD 121
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPIS--------EE 179
++ F KS K+ ++ + L +LV++ Y+ P++ +L +S E+
Sbjct: 122 IRSHFSSPKSKGKDASI-----YYQALYQLVSSSYL--VPST--VLFHVSPRDKFLQYEK 172
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
E + K +AK++ E A A R +G ++ S +
Sbjct: 173 EEKNQIKSFPTAKELKE-----------AKERAAARLKREQEDAMKIGLTKRGSAKINGT 221
Query: 240 EKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQ 299
+ K ++ + V +R N F +R K VR ++ V+ A+L+
Sbjct: 222 KLGKRKAMDD----EVVDDDVYFRVNATKFNIHIRSKLIQTAVRERYNESTTTVMRAILK 277
Query: 300 ATSSAEKKVKTKN--SVPLSLSSIYEEV-----------------------IKSEAGRNM 334
SAE K + S +S+++I + +K G
Sbjct: 278 ---SAEAKATMSDVRSDSVSIATIASHIPDEQDITAGLAYSSTKKPSMMSALKEYLGILA 334
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
+ D+ + +SF SS +++E I + +E+V +RYG +A R+ RLL
Sbjct: 335 SADNPTPAGRAASFISFAGVSSGKVYVEYEIICRRLRRRVLEAVARERYGDEAVRVVRLL 394
Query: 395 SKSGRL 400
++G++
Sbjct: 395 LENGKM 400
>gi|355389069|gb|AER62477.1| hypothetical protein [Hordeum marinum subsp. marinum]
Length = 138
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 316
E V++R NFE FI L+ K C D + L G + + +A+ + K NSV
Sbjct: 15 ENEVLWRVNFEKFIFCLKKKFCADRKKPKLKVGTHPIWESFFEASLTD----KDTNSVTS 70
Query: 317 SLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVE 376
S+ I E++ + E G M++ ++ L +L + + + ++ D K+IE +NEE+E
Sbjct: 71 SIDGILEKLGQKEGGAAMSIGQIKPVLE---DLQCITSPGEEFTFDLRKMIEACRNEEIE 127
Query: 377 SVVSKRYGRDA 387
S+V K+YG++A
Sbjct: 128 SLVKKKYGQEA 138
>gi|328874073|gb|EGG22439.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 633
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 146/316 (46%), Gaps = 33/316 (10%)
Query: 234 NNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANV 293
N + E+ +HD+LE EQ ++ N++ F+ + CID V LD +A +
Sbjct: 329 NVINQVEQDQHDLLE--------EQKTYWKVNYDQFLLEFKLMACIDFVEHKLDGKSAAL 380
Query: 294 LSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEA----GRNMTLDHVR----ASLVQ 345
+ML+ + K N+ +S I +EV K G + +D+ SL+
Sbjct: 381 YESMLKLVKRSIKSSPDPNA-NISPKFIADEVFKDYNQMVDGMDQQMDNKHFENYLSLMA 439
Query: 346 LGELSFVDASSDS-------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
+ + + S Y+I+ + ++ + +ES++ ++YG R+F+LL
Sbjct: 440 ASRPAIITKQARSSTLETGIYNINISDVAKVVNQKMLESIIKQKYGDGGLRLFKLLM-IK 498
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILW 456
+ L+ +I++ + K+ +L+K+ + G + ++++ + F L+ VNR +
Sbjct: 499 KFLDAKQIAEMAMIPLKECKVLLFKMMERGVVKLQEVPRSADHFAAKTFYLFFVNRDAVT 558
Query: 457 KHVLDEMFHAALNLSLRVSYE----LDREKELLNLPADKRTGPLQDRY-NRIRKVRILLE 511
+ +D+++ A N LR+ E D K L +P DK Q + +++K+ +LE
Sbjct: 559 EMTIDDIYKAIYNTRLRLKAEAQPHADLIKRLETVP-DKEMSEDQSKIVTKVQKITEVLE 617
Query: 512 SSQMKLDDAILLFHDF 527
+ + LD +L+ F
Sbjct: 618 ITILNLDSDLLVLSHF 633
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 96/185 (51%), Gaps = 19/185 (10%)
Query: 22 VAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCV--QAFTTEQPDGFADG 78
V++V + L+ KG T R + ++K +L VL+Q V + + + D G
Sbjct: 20 VSEVFKHLVNKGKSTIRGLTTALKTIPTNRIKQSLQVLLQHQLVDFEEYIIKDEDKNKKG 79
Query: 79 PK----ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 134
P ++ YV +N +HR+R K++ + + +DQ+C +++ L+++GRLT++ + +
Sbjct: 80 PAEDQVSDAYYVANVNNAIHRLRIGKYINFIKERYDQECAVIIEELMDNGRLTMESVVKQ 139
Query: 135 AKS--SEKEGNLVDLDSLR---ETLVKLVTAHYVERCPASEPLLMPISEEEGPA-----R 184
+ S S++ G+ D +R + +LV H++ + P P+ ++E+G A R
Sbjct: 140 SVSYYSQRAGSFDPEDLVRRFEDLFTQLVVDHFIMKVPKPRPISQ--NDEDGEATVKEKR 197
Query: 185 KKGSK 189
+KG +
Sbjct: 198 EKGGR 202
>gi|281209832|gb|EFA84000.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 853
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 127/621 (20%), Positives = 253/621 (40%), Gaps = 136/621 (21%)
Query: 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ-- 65
K A ++ +FG+ V KV L+ +G T +N+ + TE+ ++V+ L VLIQ N V
Sbjct: 268 KVACDIVKENFGEDVEKVYRLLVTRGKSTIRNMVQGTEMKTKRVRQCLFVLIQHNLVDYE 327
Query: 66 ---AFTTEQPDGFADGPK-ANTQYVVLFDNI------------LHRVRFAKFLTILSQEF 109
++P A P A Q D++ +HR+RF K++ + ++
Sbjct: 328 EYLMPKEKKPGTPAKIPTTAQLQQAPTLDDLSDSLYSANVSYAIHRLRFTKYIVFIREKL 387
Query: 110 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKE--GNLVD-LD-SLRETLVKLVTAHYVER 165
L++ L+++GRLT++ + +++ + K+ GN D L+ E +LV H++ +
Sbjct: 388 GDAAAILLEELMDNGRLTMEAVVNQSATYTKQRTGNFDDDLNRQFEEVFSQLVVEHFIMK 447
Query: 166 CPAS---------------------------------EPLLMP----------------- 175
P +P +P
Sbjct: 448 APNPKPILGDEDEIKNAAKDAKKASTTLSKQQQQLLHDPFALPSSLLKKTKPADTNIISN 507
Query: 176 ----ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD------ 225
I+ EE P RKKG+ +A A+R V + E D
Sbjct: 508 RPVAITPEEDPRRKKGAAGGLASKT-TMKTTSSTKATSKSGAVRKRKVDDDEDDESLPDV 566
Query: 226 --VGEKE----KNSNNVTPGEKRK----HDVLELDECGVA---DEQSVVYRANFEGFIRR 272
V E N ++ P ++R ++V+ +E A +E+ +++R N++ FI
Sbjct: 567 LLVSESAPVDIPNDGDLQPWKRRAVENVYNVVSSEEQNQALQSEEKKILWRINYDQFIIE 626
Query: 273 LRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGR 332
+ C + V++ L+ AA + +AM+ + K + N+ SSI+ E I E +
Sbjct: 627 FKLLACYEFVQSKLNHQAALIFNAMVNICKKSIKLNQENNT-----SSIFTEDILKEYNK 681
Query: 333 NMT--LDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 390
N+ D + ++ L + A+ S II Q++ S+ G Y++
Sbjct: 682 NVVDESDRIDGKILD-NYLPLMQATRPS-------IITRMQSQSKSSLAD---GGGVYQV 730
Query: 391 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 450
+ +L+ + + + ++ ++ P+ D + AR F L+ V
Sbjct: 731 N--IGNISAVLKQKMMMEQSIIKLQEVPR-----SSDHF---------AAR--TFYLFFV 772
Query: 451 NRQILWKHVLDEMFHAALNLSLRVSYEL----DREKELLNLPADKRTGPLQDRYNRIRKV 506
+ + + ++D+++ A N R+ EL D K++ +P ++ + +++++
Sbjct: 773 DYPNVSQMLIDDIYKAVYNCRERLRSELQPHEDMVKKMETIPEEQLSNDQTKLLRKVQRM 832
Query: 507 RILLESSQMKLDDAILLFHDF 527
+LE+ M LD+ +L+ F
Sbjct: 833 TEILETMVMNLDNDLLILSSF 853
>gi|66828367|ref|XP_647538.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74859265|sp|Q55FJ5.1|RPC3_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName:
Full=DNA-directed RNA polymerase III subunit C
gi|60475558|gb|EAL73493.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 666
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 22/205 (10%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGP----LTRQNVKRYTELSDEQVKNALLVLIQ 60
Y K A+ ++ FGD V KV E L+++G + Q++ L+ +++K LLVLIQ
Sbjct: 2 YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61
Query: 61 QNCVQ------AFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ 112
N V T ++ + G +++ Y + N +HR+RF KF+ + +
Sbjct: 62 HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYIKHSKGDE 121
Query: 113 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSL----RETLVKLVTAHYVERCPA 168
+++ L++HGRL + + +A ++ D D + +T KL+ ++ R P
Sbjct: 122 AAYILEELIDHGRLPMDLLIKQASQIQRVDTFEDQDDITKRFEDTFTKLIMDQFIMRAPR 181
Query: 169 SEPLLMPISEEEGPARKKGSKSAKK 193
P+S++E SK AKK
Sbjct: 182 PR----PVSDQE--TSNALSKEAKK 200
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 27/258 (10%)
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
+D+ + DE V++ N+E FI + K C D V + + + +AM++ K+
Sbjct: 369 MDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSGLLFNAMVKLC----KRS 424
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS---------- 358
N L+ S +Y E I E R++ L LS + AS S
Sbjct: 425 IRSNQDSLT-SCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASRPSMVTKMVSKSK 483
Query: 359 ---------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDT 409
Y ++ II I + + VES++ +++G + R+F+LL LLE +I++
Sbjct: 484 QSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLLLIKN-LLEPKQIAEL 542
Query: 410 TFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAA 467
+ + +L+ + + + ++++ + F L+ V+ + +++F A
Sbjct: 543 AMIPPNECKALLFNMMQKNIIRLQEIPRSSDHFANRTFYLFFVDLPTIIATFTEDIFKAI 602
Query: 468 LNLSLRVSYELDREKELL 485
N R+ EL+ K+ L
Sbjct: 603 YNTRERLKSELEPHKDAL 620
>gi|403307951|ref|XP_003944445.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Saimiri
boliviensis boliviensis]
Length = 463
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 110/235 (46%), Gaps = 15/235 (6%)
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 319
+ ++AN + F + R + + V +D ++ ++ ML+ + ++ T +S P +
Sbjct: 162 IYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----EITTSSSAPFTQP 216
Query: 320 SIYEEVIKS-EAGRNMTLDHVRASLVQLGE--LSFVDASSDS----YSIDFEKIIEIAQN 372
E+ +S G N++ + L L + L FV S DS Y I+ K +
Sbjct: 217 LSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLAT 276
Query: 373 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432
+ESVV +R+G RIFRL+ + + LE ++ D + K+A +LYK+ + ++ +
Sbjct: 277 ATLESVVQERFGSRCARIFRLVLQK-KHLEQKQVEDFAMIPAKEAKDMLYKMLSENFISL 335
Query: 433 EKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+++ T A F L+ VN + +L + + NL R +E K LL
Sbjct: 336 QEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLL 390
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 50 QVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEF 109
QVK AL VL+Q N V + + +Y +L +R+ +++ +
Sbjct: 2 QVKKALCVLVQHNLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLY 52
Query: 110 DQQCVELVQGLLEHGRLTL----KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
+V+ LL +G+LT+ K++ DR + ++G +D + T V+L H+V+R
Sbjct: 53 SDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQR 112
Query: 166 CPA 168
CP+
Sbjct: 113 CPS 115
>gi|345496353|ref|XP_001603173.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Nasonia vitripennis]
Length = 500
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/488 (19%), Positives = 209/488 (42%), Gaps = 82/488 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG +V + L + GP T ++ +L ++K +L VLI+ V
Sbjct: 12 ILLEHFGPIVEQTASDLFQHGPRTLGQMRSTIKLPISKIKESLCVLIKFGIV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F + + Y + D I+ +R+ +++ + + +++ +L++G
Sbjct: 64 --FYEQTERGLIYNLDTDKIITILRYPRYMYFVENCCGNEAEMMLEEVLKNG-------- 113
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
D+ + +VK T +E+ P P R+ K
Sbjct: 114 --------------YDTASQIIVK--TYKKLEQFP--------------PERRSSVPVLK 143
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
E +V+ M ++ ++++V +D + S N+ K + + +E
Sbjct: 144 DKFE------LLVKNQFLMRSLCSDILSDVPTDKPDFSMPSLNI----KALTRLTQGNET 193
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAEKK 307
A + ++ ++ N + F + LR + + + +DD A ++ +L + S A+
Sbjct: 194 EPAGDSNIYWKVNIDRFTQDLRDQILVKSIMNRIDDSAGELMRQLLYLMYLRTASWAD-- 251
Query: 308 VKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FVDASSDS----YSI 361
S+P+ ++ I + + K+ L H+ L + E S F+ DS YS+
Sbjct: 252 ----TSIPIPVTEIKDAMKKNFPS---ILPHLDQYLRIIEEDSSQFIQRVGDSGGGQYSV 304
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
+ ++ +E+VV +R+G A RIFRL+ +S + +E +KI+ + K+A +
Sbjct: 305 NMKEAFHQLAWAVLENVVMERFGSKAARIFRLI-RSHKYIEQEKINQIAMIPAKEAKILT 363
Query: 422 YKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
+KL ++ +L + +L V+ A F L+ ++ + + ++ +HA N+ R +E+
Sbjct: 364 FKLLEENFLQIHELKKAGVSTAPTKIFFLFHIDLNQVVRMTIEHCYHALYNVIQRREHEM 423
Query: 479 DREKELLN 486
K +++
Sbjct: 424 TSNKRIID 431
>gi|357609201|gb|EHJ66344.1| putative DNA-directed RNA polymerase III, 62-kS-subunit [Danaus
plexippus]
Length = 497
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 111/492 (22%), Positives = 203/492 (41%), Gaps = 96/492 (19%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ +FG++V KV L G + + T L QV +L L++ + T E
Sbjct: 11 QILNRYFGEIVEKVGNDLFMYGCKPMGMIIKSTGLPRTQVIESLRTLLKFDLA---TFEA 67
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT---- 127
D D Y + +NIL +R+ ++L + ++ + LV+ LL+ T
Sbjct: 68 KDVIVD-------YKLQPENILLLIRYPRYLLQMKTKYGSEAEMLVEELLQQASCTATVL 120
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASE-----PLLMPISEEEGP 182
+ + ++ K +KE NL ++ L++T + L TA Y+++ P +E P+L+P++
Sbjct: 121 IVSVMNKYKD-DKEKNL-NIVKLKDTFISLATAGYIQQAPVAEINNEIPVLVPVA----- 173
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
TI + +V + N NNV+
Sbjct: 174 ----------------TIVPDL----------------DVRELINAMNSNLNNVS----- 196
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
++ ++ N++ F R + I V +DD A +L ML+
Sbjct: 197 ---------------DNIYWKVNYDRFHLDFRDEVMIKAVTRRIDDNAGELLKLMLEQMY 241
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFVDASSDSYSI 361
+S P+ L+ + + G NM +HV L + E F+ + D+
Sbjct: 242 -LSSSSWASDSSPVPLTDLKDGC--QRIGENMK-NHVEQYLRVIEESTGFIRRTGDAGGG 297
Query: 362 DFEKIIEIAQNEEVESV----VSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+ I+ A + VE+V V++R G A RIFRL+ +S + LE D I + K+
Sbjct: 298 QYSVRIQHALIQLVEAVCDHTVTERLGGKAARIFRLI-RSKKYLEEDDIQKNAMLPNKEC 356
Query: 418 PKILYKLWKDGYL---LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
++ YKL ++ ++ M K G L+ V + HV+ +M + +L+ + V
Sbjct: 357 KELTYKLLEEHFISVQPMRKTASAGGMAKAIYLYHVKLHDV-AHVVRDMCYRSLHNVMSV 415
Query: 475 SYELDREKELLN 486
S R + +LN
Sbjct: 416 S----RHRRVLN 423
>gi|119591840|gb|EAW71434.1| polymerase (RNA) III (DNA directed) polypeptide C (62kD), isoform
CRA_a [Homo sapiens]
Length = 319
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 141/329 (42%), Gaps = 42/329 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T S +QVK AL VL+Q N V
Sbjct: 12 LLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLV-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G+LT+
Sbjct: 64 -SYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
K++ DR + ++G +D + T V+L H+V+RCP+ +P +E P +
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS-----VPTTENSDPGPPPPA 177
Query: 189 KSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE-KRKHDVL 247
+ V+ + S++ G++ ++S+ GE K K
Sbjct: 178 PTL------------VINEKDMYLVPKLSLIGK-----GKRRRSSDEDAAGEPKAKRPKY 220
Query: 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK 307
D + + ++AN + F + R + + V +D ++ ++ ML+ + +
Sbjct: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMS-----E 275
Query: 308 VKTKNSVPLSLSSIYEEVIKS-EAGRNMT 335
+ T +S P + E+ +S G N++
Sbjct: 276 ITTSSSAPFTQPLSSNEIFRSLPVGYNIS 304
>gi|325181778|emb|CCA16234.1| PREDICTED: similar to Polymerase (RNA) III (DNA directed)
polypeptide C (62kD) putative [Albugo laibachii Nc14]
Length = 619
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 122/616 (19%), Positives = 248/616 (40%), Gaps = 107/616 (17%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------TELSDEQVKNALLVLIQQNC 63
+++I + FG + + +LR L + Y T++S ++K +LL L+Q N
Sbjct: 12 LNIIESDFGQTAKLIAQGILRSDGLKLPGIIEYVQRTVKPTQISMSEIKCSLLKLLQHNM 71
Query: 64 -----VQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
V T ++ +N Y + +L+R+ F +F+ + ++F +++
Sbjct: 72 LTFKPVAPTTNKKKSEQMSHTTSNACYYIDISEVLYRLHFPRFIDLAKKKFGDAGEIIME 131
Query: 119 GLLEHGRLTLKQM-----FDRAKSSEKEGNLVDLDSLRE------------TLVKLVTAH 161
+L +GR+ + + + A+S K+ N D S+ E V++
Sbjct: 132 EILVNGRVRMDESIELMSYRLAESRLKKENSEDASSISERELQDSRELVNFNFVEMAKNR 191
Query: 162 YVERC---------PASEPLLMPISEEEGPARKKGSK-------SAKKIGEPETI----- 200
Y+ R S+ + + E+ G ++G+ S + + + I
Sbjct: 192 YISRVHPVKMTLEQQKSKSIDLMAEEQSGNKNQRGANNMIKSEISTESLADEHGIAVRVK 251
Query: 201 --EQQVVEAALPMEAMRF---SVVTNVESDVGEKEKNSNNVTPGEKR----------KHD 245
++ V + LP+E M + VESD E N P +KR KH
Sbjct: 252 KEKKNVRGSNLPVELMMLLESQDMAMVESDEAEFVGTVN--PPAKKRSRLSKRAKLPKHG 309
Query: 246 VLELDECGVADEQS--------VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
AD QS ++R + +R LRH C+ +++ A ++SAM
Sbjct: 310 ATPYHTQTKADNQSNSEIDEKTPIWRCGTDQLLRELRHDACVRFAMENVNHVAGVIVSAM 369
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQL--------GEL 349
L + S E++ S P+S IY+ +A D R L L G +
Sbjct: 370 LSHSMSHERESNEPTSHPMSAREIYKVDEVKQALPKEIKDTWRLLLNYLAVMVRDKSGMV 429
Query: 350 SFVDA-SSDS----------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
+ V A +DS Y + + I + + + + + ++G + RI RL+ +
Sbjct: 430 TRVGAEKADSATTQGGDGGQYVVHMKNITDFLKQATMHAYIQDKFGVQSARIVRLILEK- 488
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLL--WKVNRQILW 456
R LE I + + ++ + +Y L+ D ++ ++++ + W VN +
Sbjct: 489 RQLEQKSIGELALLPLNESRRRVYDLYSDKFIHLQEIPKRSDHNPVHTMYTWSVNTFHIE 548
Query: 457 KHVLDEMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQD-----RYNRIRKVRILLE 511
+ + + + + L R + + KEL+ R+ L + +++++ + L+
Sbjct: 549 RVIRERVQDSICKLRSRRDFIANDNKELI-----ARSNQLVEENDLEKFDKLSRSLDRLD 603
Query: 512 SSQMKLDDAILLFHDF 527
S ++LD+ ++L+ DF
Sbjct: 604 RSLLQLDENLMLYRDF 619
>gi|328768118|gb|EGF78165.1| hypothetical protein BATDEDRAFT_91024 [Batrachochytrium
dendrobatidis JAM81]
Length = 485
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 120/544 (22%), Positives = 214/544 (39%), Gaps = 99/544 (18%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG LV KV LL KG + + ++L + ++ +L +LIQ + Q E
Sbjct: 12 ILKEHFGSLVQKVGFVLLSKGRSNLAAIAQSSKLPIKIIRESLFILIQNH--QVTFAENT 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+G + Y IL R RFA +++ S ++ +LE G L ++
Sbjct: 70 EGM----RVVVYYEANIKEILLRDRFALYISTASTHLGVNAGLIISKVLEAGYLAPLKLL 125
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMP---ISEEEGPARKKGSK 189
K +EK D+ + E KLV +V A + L + I EE G
Sbjct: 126 KSCKLTEK-----DISACME---KLVQGRFVRTVSAIDSLTINDKYILEEREAIANTG-- 175
Query: 190 SAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLEL 249
A P+ + + + + EK N TP K VL+
Sbjct: 176 -----------------AGAPLSSTELA---KLRKSLAEKRSNYAQ-TPSSGTKRKVLDF 214
Query: 250 DECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVK 309
+E E++ K + ++D A ++ AML T S K
Sbjct: 215 EE-----EEN---------------RKKIAELASQRVNDTAGRLIKAMLDHTYSQLNSCK 254
Query: 310 TKNSVPLSLSSIYEEVIKSEA-GRNM---------TLDHVRASLVQLGELSFVDASSDSY 359
PLS SI E+I + G+ + ++++ A + + ++ + + Y
Sbjct: 255 E----PLS-PSIRREMIGTLVRGQELHVHGHSNDPAMEYIEALVSERAKI-VSNLNGTLY 308
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+I+ + + Q + +ES++ +++G RI+RLL +L E ++ + K A +
Sbjct: 309 AINLRDSVRVMQIDLIESIIQEKFGDVCRRIWRLLYMKQKLDE-KQVGKQAMINNKVARE 367
Query: 420 ILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
LY + K+G + ++ + T + F LW V+ + +L + + LR
Sbjct: 368 CLYTMLKEGLVYLQDVPKTMDHSASRTFFLWYVSIERTCTVLLTNAYKTLHRIKLR---- 423
Query: 478 LDREKELLN----LPADKRTGPL----------QDRYNRIRKVRILLESSQMKLDDAILL 523
R KELL+ L R+ L Q+ + V L S+M++D ++L
Sbjct: 424 --RTKELLDRTLLLEKTNRSDVLSGEAQLTTTDQENLAHLNTVLKKLHISEMRIDQMVML 481
Query: 524 FHDF 527
DF
Sbjct: 482 LRDF 485
>gi|440297472|gb|ELP90166.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
invadens IP1]
Length = 493
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 104/491 (21%), Positives = 205/491 (41%), Gaps = 73/491 (14%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
+ +I+N FG+ V +V LL P T ++ R T+ +V ALLVL+ ++ ++ +
Sbjct: 11 IQIISNQFGEFVGRVSRELLLH-PTTIFDLWRRTKFPYSRVYEALLVLLHHGILR-YSKD 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P V D +L +R F+ ++ +F + LL +G L
Sbjct: 69 EP------------MVCSIDQNRVLFSLRHPHFVALMQVKFGDLAKSISMTLLSYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGS 188
++ +S E E +D +++T LV A Y+ R + L + PA S
Sbjct: 117 DDLYAVIQSKEPE---LDRKEVKKTFDDLVKAKYIMRVNKNISDLAQLERTSTPA---PS 170
Query: 189 KSAKKIGEPETIEQQV-----VEAALPMEAMRFSV-VTNVESDVGEKEKNSNNVTPGEKR 242
S K + + + + +E +P + M+ V + N+ S + ++ N +V P
Sbjct: 171 FSIMKQNDGQKKKGRKKSKAEIEKPIP-KKMKAGVDIKNINSPLDQE--NQEDVEP---- 223
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
V+ N E + + ++ D+ A +++ M + ++
Sbjct: 224 ------------------VWMVNIEVYNKENILSKILEMATKKFDEKAGPIINKMWELSA 265
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIK--SEAGRN----MTLDHVRASLVQLGELSFVDASS 356
+ P+ + + + +I+ E R MT D + S V A +
Sbjct: 266 CGK--------TPVDFAVLCQNLIELPPETVRKYLEMMTRDE---PFIVAKNQSAVVAET 314
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
+SY + E + + +ES +S RYG A +FR+L K +L +I+D + +
Sbjct: 315 NSYKLQVEAATAFLKGQLIESTLSSRYGVLAANVFRVL-KMKHVLTDSQIADLLIGDIDN 373
Query: 417 APKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
IL+KL++ G++ +++ + R ++ + +W VN +L E A +N + R
Sbjct: 374 IRGILFKLFQAGFINGQEVPRSHLRGGKNAYFMWSVNFSQTNAILLRETAKAIMNTTERY 433
Query: 475 SYELDREKELL 485
E+ + EL+
Sbjct: 434 RMEISMKAELI 444
>gi|194742686|ref|XP_001953832.1| GF17964 [Drosophila ananassae]
gi|190626869|gb|EDV42393.1| GF17964 [Drosophila ananassae]
Length = 522
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/483 (19%), Positives = 201/483 (41%), Gaps = 62/483 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL + + T+LS ++V AL VL++ V F+ Q
Sbjct: 12 ILEQCFGKVVQLVADCLFSATTRSLSQIASSTKLSRKEVALALAVLVKYRLVD-FSASQQ 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQAKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R + ++++T HY+ + +P L+ E + K +
Sbjct: 125 VKC-LTEGENKSESAESYRNSFLQMITDHYIIK----KPELLSSDETDEVIPKFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ + + E+ V E
Sbjct: 180 YYRHP-NIDLQLL-----------AKIRKGEATVSE------------------------ 203
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A + +V+ N++ F + R ID + L + AA +L+ + + K
Sbjct: 204 --AKDGHMVWTLNYDRFHQDFRDSIMIDAIERKLGENAAECFRFILKIMYNTTDPWQRKL 261
Query: 313 SVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDSYSIDFEKI 366
S ++ I + + K ++ LD SL+ L F+ D + +D EK
Sbjct: 262 SNQVTFVEIKQTIEKKSNNLDLMKYLDQY-ISLITDDSLGFLRRVGDMGGGLFVVDMEKS 320
Query: 367 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 426
E VESV+++R+G A RIFR++ + + +E + + + K+A + Y L++
Sbjct: 321 FESLAFACVESVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKSLAYNLFQ 379
Query: 427 DGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 482
+ ++ ++ + G + F L++V + + +LD + + N R ++E + K
Sbjct: 380 EQFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDVSYKSLYNTIERSNFEKNEHK 439
Query: 483 ELL 485
L+
Sbjct: 440 GLI 442
>gi|298707347|emb|CBJ29991.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 324
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 136/290 (46%), Gaps = 22/290 (7%)
Query: 259 SVVYRANFEGFIRRLRHKGCIDHVRAHLDDG--AANVLSAMLQATSSAEKKVKTKNSVPL 316
SV+++ F+ F R R+ + V+ A V+ ML +S E+KV + S +
Sbjct: 36 SVLWKLGFDKFHRDFRNLALLGLVQDRFPKSKLAYLVVKVMLDNSSPTERKVDEQVSASI 95
Query: 317 SLSSIYEEVIKSEAGRNMT-----------LDHVRASLVQLGELSFVDASSDS----YSI 361
S +++++ ++ N+T + + A L + SD+ Y +
Sbjct: 96 SARDLFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVV 155
Query: 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKIL 421
+ K+++ + V+ RYG++ RI +L ++ + L+ ++ + + DA + L
Sbjct: 156 NMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQN-KYLDQQQVGEMAMIPPSDARERL 214
Query: 422 YKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELD 479
Y+L +D + ++++ R + F LW + + + VL+ ++ A LN+ LR +
Sbjct: 215 YRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYS 274
Query: 480 REKELLNLPADKR--TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+K L A R ++R +++R+ L+++ ++LD+ ++ F+ F
Sbjct: 275 NDKALFIHDAAARLSNDAERERLDQVRRSLDRLDTALLRLDENLMFFNTF 324
>gi|383855772|ref|XP_003703384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like
[Megachile rotundata]
Length = 511
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 116/249 (46%), Gaps = 24/249 (9%)
Query: 251 ECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML-----QATSSAE 305
+CG + + + NF+ F + LR + + + LD+ A ++ +L + S A+
Sbjct: 194 DCG---DDKIYWEVNFDRFTQDLRDQIIVSAMHKRLDENAGELMRQLLFLMYLRTASWAD 250
Query: 306 KKVKTKNSVPLSLSSIYEEVIK-SEAGRNMTLDHVRASLVQLGELSFV----DASSDSYS 360
S P+ L+ I + V K + LD L++ FV D+ YS
Sbjct: 251 ------TSNPIPLTEIKDAVKKINYPSLTQYLDQY-LRLIEEDSSQFVKRVGDSGGGQYS 303
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
I+ ++ +E++V +R+G A RIFRL+ + + +E ++I + K+A +
Sbjct: 304 INMKEAFSQLAWTTLENIVMERFGSKAARIFRLV-RDRKYIEQERIQQLAMIPAKEAKHL 362
Query: 421 LYKLWKDGYLLMEKLV---VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYE 477
Y L ++ YL M++L V+ A F L+ ++ ++ + ++ +HA N R YE
Sbjct: 363 TYTLLQENYLQMQELKKPGVSTAPIKTFFLFHIDLNMVVRMEVEHCYHALYNTMQRREYE 422
Query: 478 LDREKELLN 486
+ K +++
Sbjct: 423 ISSNKRMID 431
>gi|189236566|ref|XP_975600.2| PREDICTED: similar to DNA-directed RNA polymerase III,
62-kS-subunit, putative [Tribolium castaneum]
Length = 475
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 97/484 (20%), Positives = 195/484 (40%), Gaps = 93/484 (19%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +YG ++ ++ FG +V KV L + G + +K++T+L +VK AL +LI+
Sbjct: 1 MSIQYGRVVSL-ILLERFGPVVEKVGTYLFQYGTVPLLYIKKHTDLPISKVKEALCILIK 59
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
V FT + + A+ Y + + +L +R+AK++ ++ ++F +C +++ L
Sbjct: 60 YRLV-TFTPNRNENVAN-------YTLQHERVLLMLRYAKYINLIKKKFGTECELIMEEL 111
Query: 121 LEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEE 180
L+ T ++ + + L++L P S E+
Sbjct: 112 LQRSYWTASEL------------------ILKYLIRL-----------------PYSMED 136
Query: 181 GPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGE 240
P K ++ P TI+ F + V+S+
Sbjct: 137 KPVPSLVIKETEQFS-PPTID--------------FKQIALVQSN--------------- 166
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
K V L + GV + NF+ F + +R K ++ D+ A + +LQ
Sbjct: 167 --KAPVDSLPDQGVY------WTVNFDRFHQDMRDKLIVNAFIKKFDENAGEFVRLLLQQ 218
Query: 301 TS-SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFV----DAS 355
+ + N VP+ ++++ +A L + L + +A
Sbjct: 219 MYIRTQPWAEVSNPVPIVE---IRDLVRKQATHQHLLAFFDQYVNVLDSSKLIRQSGEAG 275
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
S+ I ++ E VE +V +++ A RIFRL+ KS + +E D+I + K
Sbjct: 276 GGSFQIFLKETFTQFAWETVEQIVLEKFDTKAARIFRLV-KSKQYIEPDQIQQLAMIPAK 334
Query: 416 DAPKILYKLWKDGYLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
+A ++ Y+L ++ +L ++ L + F L+ N + + L+ + N+ R
Sbjct: 335 EAKRLSYQLLEENFLQVQDLKKSTSNGPNKSFTLFYTNLDQIVRMTLELCYKTLFNIMTR 394
Query: 474 VSYE 477
++E
Sbjct: 395 KNHE 398
>gi|393225849|gb|EJD33728.1| hypothetical protein AURDEDRAFT_177195 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 131/308 (42%), Gaps = 39/308 (12%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+E G K V +I HFG L A++ LL +G L+ + R L + V+ A+LVL+Q N
Sbjct: 4 SESG-KLCVQIIHEHFGPLTAQIAAVLLHRGRLSMPQLARELGLKSQTVRAAVLVLVQHN 62
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T+ + + D + R+RF ++++ + F Q+ E+V LL+
Sbjct: 63 ILWHAETDDRTEVME---------INIDECIARLRFGHYVSLAREIFGQEASEIVAILLD 113
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER-------CPASEPLLMP 175
HG+L L + R S+ + V + + KL+++ +++ CP + L+
Sbjct: 114 HGKLRLPDILSRLLVSKPKEQAV----YTQMVHKLISSTHLKPSTVLSHICPRDK--LIN 167
Query: 176 ISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNN 235
+E +K SAK I A + R +G K K +
Sbjct: 168 YEADELKKKKTAIISAKDI-----------RGAKDLAVARLRKEEEEAEKIGFKRK-AKE 215
Query: 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLS 295
PG K ++E + V DE V +R N F +R+ + +D AA V+
Sbjct: 216 ALPGRASKKQIVEEE---VIDED-VHFRVNHSKFNVHIRNNLIVAAAAERYNDAAAVVIR 271
Query: 296 AMLQATSS 303
A L+A +
Sbjct: 272 ATLKAAEA 279
>gi|195329508|ref|XP_002031452.1| GM24041 [Drosophila sechellia]
gi|194120395|gb|EDW42438.1| GM24041 [Drosophila sechellia]
Length = 522
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 100/491 (20%), Positives = 199/491 (40%), Gaps = 76/491 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V FT +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FTASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P LL+ G +
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIKRP---ELLV------------GDDQDE 168
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
+ + ET E F N++ + K + K H V L
Sbjct: 169 NVPKFETNE------------CDFFRHPNIDLQLLAKIQKGEATLAEAKDSHMVWNL--- 213
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
N + F + R +D + L + AA +L M T E+K
Sbjct: 214 ------------NHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK- 260
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSY 359
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 -------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVY 313
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+D E E VE V+++R+G A RIFR++ +S + +E + + + K+A
Sbjct: 314 VVDMEHAFESLAFACVECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKS 372
Query: 420 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ Y L+++ ++ ++ + G + F L++V + + +LD + + N R +
Sbjct: 373 LAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSN 432
Query: 476 YELDREKELLN 486
+E + K L++
Sbjct: 433 FEKNEHKGLID 443
>gi|195500509|ref|XP_002097404.1| GE26202 [Drosophila yakuba]
gi|194183505|gb|EDW97116.1| GE26202 [Drosophila yakuba]
Length = 522
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 98/490 (20%), Positives = 198/490 (40%), Gaps = 76/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQN 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 72 PFLA-------EYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 125 VKC-LAENENKTESPESYRNTFLQMITDHYIIKRP--ELLVGDDQDENVP--KFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIHKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N++ F + R +D + L + AA +L M T E+K
Sbjct: 206 ----DSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK- 260
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSY 359
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 -------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVY 313
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+D E E E V+++R+G A RIFR++ +S + +E + + + K+A
Sbjct: 314 VVDMEHAFESLAFACAECVITERFGSKAARIFRVI-RSKKYIEQEDLQKEAMIPSKEAKS 372
Query: 420 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ Y L+++ ++ ++ + G + F L++V + + +LD + + N R +
Sbjct: 373 LAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSN 432
Query: 476 YELDREKELL 485
+E + K L+
Sbjct: 433 FEKNEHKGLI 442
>gi|353235115|emb|CCA67132.1| hypothetical protein PIIN_00966 [Piriformospora indica DSM 11827]
Length = 530
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 134/310 (43%), Gaps = 43/310 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I +HFGD+V+ V + L G L+ + + +T+L + +L+VL Q +
Sbjct: 12 IIKSHFGDMVSLVVQTLAAHGRLSFRELVLFTKLKPRAIAASLIVLSQHGLL-------- 63
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ + + +Y D L R RF KFL I + + + V +VQ +L+HGR+ Q+
Sbjct: 64 --WHSNVQDDERYECNVDECLQRQRFGKFLLIANDLYGEDGVLVVQTILDHGRVRFPQLI 121
Query: 133 DRAKSSEKEGNLVDL--DSLRETLVKLVTAHYVER-----CPASEPLLMPISEEEGPARK 185
+ E+ G L L L++ +K T + + A LLM + +
Sbjct: 122 EELPQIER-GRLQKLVRRMLQKRFIKSTTEYLTKSRADRIADAENRLLMA----DVTTKN 176
Query: 186 KGSKSAKKIGEPET-IEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 244
SAK++ E E+QV +EA+ + E + + K K
Sbjct: 177 VAVASAKRLAEKRLEAEEQVAAREREVEALGLKL----------SESKATTKSMKGKDKD 226
Query: 245 DVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSA 304
E+DE ++ R NF F LR+ VRA ++ AA+V+ A+L+AT
Sbjct: 227 KEKEIDE-------TIWLRINFTTFNICLRNSLIESAVRARYNEPAASVMRAVLKAT--- 276
Query: 305 EKKVKTKNSV 314
EK + N +
Sbjct: 277 EKNIVGSNGI 286
>gi|198429990|ref|XP_002130318.1| PREDICTED: similar to DNA-directed RNA polymerase III subunit RPC3
(RNA polymerase III subunit C3) (DNA-directed RNA
polymerase III subunit C) [Ciona intestinalis]
Length = 521
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 105/509 (20%), Positives = 196/509 (38%), Gaps = 69/509 (13%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
A ++ H+G + A V LL+ G + + L +QV+ AL +LIQ +
Sbjct: 9 AYELLQEHYGKIAADVASFLLQNGWQPLRYIALKANLKLDQVRKALCLLIQHKLAK---- 64
Query: 70 EQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL--- 126
F + +Y + +N+L + KF+ + + +V+ L+HG +
Sbjct: 65 -----FHVRKRKIVEYAINIENVLSILFHPKFIYTVKLLYGDAAELIVEEALQHGIILMS 119
Query: 127 -TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARK 185
+K + DR G + + LV H+++R
Sbjct: 120 TAIKNVADRLPDENGSGK------IEKAFKDLVQTHFLQR-------------------- 153
Query: 186 KGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR--- 242
+ E E+ +V EA + + T E + K + + P KR
Sbjct: 154 ------EPEVEKNEEEEYIVPIFTQNEADLYRLPTLSEESLKRKRSDDGSDEPKAKRLKS 207
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
+H+ + V ++ V + N F + R + + V ++ AML+ S
Sbjct: 208 EHETPSMP-TDVVEDDGVYWSVNISRFQQYFRDQSIVASVTQRFGTPCGEIVRAMLR-IS 265
Query: 303 SAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV-------QLGELSFVDAS 355
+++ P+S + I + + + ++HV L Q+ +L S
Sbjct: 266 EVTTPANAQSTQPISSAEIARSL-----PQKLPMEHVEQHLKLLSNDEDQIVQLFDDSGS 320
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
Y ++ + V S V +RYG A RIFRLL + LE ++ + + K
Sbjct: 321 GGLYVVNLKNSALALATATVLSYVQQRYGSKACRIFRLLMLK-KHLEQKQVEEFAMIPPK 379
Query: 416 DAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
+A LY + + ++M+++ T A F L+ VN Q L + +L + + NL R
Sbjct: 380 EAKGYLYHMLAENMVIMQEVPRTPDHAPARTFYLYSVNIQRLSRILLVKCYKTCTNLMTR 439
Query: 474 VSYELDREKELLN----LPADKRTGPLQD 498
++ + K +L+ + A K T P D
Sbjct: 440 HNHLIKTNKRILDKEERITAIKATLPDAD 468
>gi|195394880|ref|XP_002056067.1| GJ10734 [Drosophila virilis]
gi|194142776|gb|EDW59179.1| GJ10734 [Drosophila virilis]
Length = 522
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/482 (19%), Positives = 189/482 (39%), Gaps = 60/482 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T S ++V AL VLI+ V F +
Sbjct: 12 ILEQCFGKVVQSVADCLFSATTRTLSQIVNSTHFSRKEVMLALAVLIKFRLVN-FEPSKN 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + ++++ +R+++++ ++ ++ + + LL G T +
Sbjct: 71 NPFL------PEYSLRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATGLL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ S+ E ++ R+T +K++ HY+ + P LM +E E + +
Sbjct: 125 LKC-LSDGENKAESAETYRDTFIKMIADHYIIKIPE----LMTDNESEDAVPRFQTNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
F V N++ + + + GE L+
Sbjct: 180 -----------------------FFVPPNIDLHLLAQ------IRKGEATLSKALD---- 206
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
++V+ N++ F + R + L + AA S +L + + K
Sbjct: 207 -----GAIVWSLNYDRFHQEFRDDIMRLAMERKLGENAAECFSFILNLIYNTTDPWQRKA 261
Query: 313 SVPLSLSSIYEEV-IKSEAGRNMTLDHVRASLVQLGELSFV----DASSDSYSIDFEKII 367
S ++ I + + KS M L+ L F+ D Y +D EK
Sbjct: 262 SNQITFVEIKQAIERKSNNLELMKFLDQYICLITDDSLGFLRKVGDMGGGQYLVDMEKAF 321
Query: 368 EIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKD 427
E VESV+++R+G A RIFR++ + + +E + + + K+A + Y L+++
Sbjct: 322 ESLALACVESVITERFGSKAARIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSLAYNLFQE 380
Query: 428 GYL----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ + + F L+++ + + +LD F + N R +YE K
Sbjct: 381 QFIHVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNYEKSEHKG 440
Query: 484 LL 485
L+
Sbjct: 441 LI 442
>gi|195166136|ref|XP_002023891.1| GL27319 [Drosophila persimilis]
gi|194106051|gb|EDW28094.1| GL27319 [Drosophila persimilis]
Length = 522
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/485 (18%), Positives = 197/485 (40%), Gaps = 64/485 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG + V +CL T + T+LS ++V AL VLI V F +
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVN-FEATKL 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +IL +R+ +++ ++ +++ + + L+ G T
Sbjct: 71 NPFV------PEYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ S E + +S R ++++T HY+
Sbjct: 125 TKCLSDE-DTRADSAESYRNIFLQMITDHYI----------------------------- 154
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDE 251
I PE I + + LP ES+ + ++ N ++ EK + L E
Sbjct: 155 -IKRPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAE 203
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 311
G + ++++ N++ F + R ID + L + A+ +L+ + K
Sbjct: 204 AG---DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRK 260
Query: 312 NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEK 365
S ++ I + + K ++ + H+ + L + L F+ D Y +D E
Sbjct: 261 LSNQITFVDIKQTIEKKSNNLDL-MKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEH 319
Query: 366 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 425
+ +ESV+++R+G A RIFR++ + + +E + + + K+A + Y L+
Sbjct: 320 AFQSLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLF 378
Query: 426 KDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 481
+D ++ ++ + G + F L+++ + + +LD + + N R ++E +
Sbjct: 379 QDQFIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEH 438
Query: 482 KELLN 486
L++
Sbjct: 439 TGLID 443
>gi|403164986|ref|XP_003325023.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165486|gb|EFP80604.2| hypothetical protein PGTG_06560 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 612
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 39/336 (11%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCV-----QA 66
H++T +G ++ LL +G L ++ R + L+ ++ AL+VLI QNCV
Sbjct: 14 HILTQLYGHACGEIGSILLNRGRLPFSSLLRMSCLTGNSIRAALVVLIHQNCVLHSDTSL 73
Query: 67 FTTE--QPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
TT P+ + GP+ + + D IL RVRF +F+ + ++F + +V+ LL++G
Sbjct: 74 LTTAAGDPNPSSSGPEY---FEAIPDEILTRVRFGQFVNLAYEQFGIESKLIVECLLDNG 130
Query: 125 RLTLKQMF----DRAKSSEKEGNLVDLDSLRETLVK-----------LVTAHYVERCPAS 169
+L + Q+ ++ S K + D D L+ + VK L+ Y++
Sbjct: 131 KLRVGQLVTMVCEQYYSQRKRLDETD-DGLQHSPVKMPQIVKSNVLNLLAERYLKPSHPK 189
Query: 170 EPL----LMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESD 225
+ L E++ A+ G S K+I + +++QV++ E F + +
Sbjct: 190 HSINPTDLELAYEKQLIAKLPGVPSPKEI---KAVKEQVMDMMATEETQAFEEMCS---- 242
Query: 226 VGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAH 285
G+K++ SN+ K + + ++ + D+ + R N+ F ++R+
Sbjct: 243 FGQKQRASNSAQNDRKAQTKRQKTEDVSLQDDMYI--RVNYARFNMKIRNSIFEQECFRS 300
Query: 286 LDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSI 321
+ A V+ AML + ++ + S P+S +I
Sbjct: 301 YNLEAGLVMRAMLILAETKQQDLNDLVSDPISAQAI 336
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 10/129 (7%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
YS++ K + V ++ ++YG +A R+ R+L GRL E ++ + KD+
Sbjct: 437 YSLELRKAL-------VSRIIREKYGIEAARVVRILMHKGRLDE-KHLAKFAMMTLKDSR 488
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
++ KL + ++++ T RQ F L+ ++ Q L ++ + + NL +R+
Sbjct: 489 ELCLKLSAGKVIELQEVPKTNDRQPSRTFYLFFIDFQKLILNLTMMIRKSQTNLIIRIDQ 548
Query: 477 ELDREKELL 485
EL + K LL
Sbjct: 549 ELKQRKNLL 557
>gi|125773573|ref|XP_001358045.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
gi|54637780|gb|EAL27182.1| GA11520 [Drosophila pseudoobscura pseudoobscura]
Length = 522
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/485 (18%), Positives = 198/485 (40%), Gaps = 64/485 (13%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG + V +CL T + T+LS ++V AL VLI V F +
Sbjct: 12 IVEQCFGKVSQSVSDCLFSATTRTLSQIASATKLSRKEVGLALSVLINFRLVN-FEATKL 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +IL +R+ +++ ++ +++ + + L+ G T
Sbjct: 71 NPFV------PEYSLSRQDILCLLRYPRYIHMVQKKYGSIGASIAEELISAGSDTASATL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ SE++ +S R ++++T HY+
Sbjct: 125 IKC-LSEEDTRADSAESYRNIFLQMITDHYI----------------------------- 154
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSN-NVTPGEKRKHDVLELDE 251
I PE I + + LP ES+ + ++ N ++ EK + L E
Sbjct: 155 -IKRPELILSEEQDEVLP----------KFESNECDYFRHPNVDLQLIEKIRRGEATLAE 203
Query: 252 CGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTK 311
G + ++++ N++ F + R ID + L + A+ +L+ + K
Sbjct: 204 AG---DSNMIWNVNYDRFHQDFRDAIMIDAIERKLGENASECFRFILKIMYKTTDPWQRK 260
Query: 312 NSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEK 365
S ++ I + + K ++ + H+ + L + L F+ D Y +D E
Sbjct: 261 LSNQITFVDIKQTIEKKSNNLDL-MKHLDQYITLLTDDSLGFLRRVGDMGGGLYVVDMEH 319
Query: 366 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 425
+ +ESV+++R+G A RIFR++ + + +E + + + K+A + Y L+
Sbjct: 320 AFQSLAFACIESVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLF 378
Query: 426 KDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDRE 481
+D ++ ++ + G + F L+++ + + +LD + + N R ++E +
Sbjct: 379 QDQFIHVKAIKKAGGGGNGLAKAFYLFQIKEKDSVRMLLDVCYKSLYNTIERSNFEKNEH 438
Query: 482 KELLN 486
L++
Sbjct: 439 TGLID 443
>gi|330792604|ref|XP_003284378.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
gi|325085724|gb|EGC39126.1| hypothetical protein DICPUDRAFT_45403 [Dictyostelium purpureum]
Length = 644
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 129/289 (44%), Gaps = 38/289 (13%)
Query: 225 DVGEKEKNSNNVTPGEKRKHDVL------ELDECGVADEQSVVYRANFEGFIRRLRHKGC 278
D+G+ +N+ P +K K DV E + + DE V++ N+E F+ + K C
Sbjct: 321 DIGD-----SNIQPNKKSKLDVYTVVSPQEQQQRIINDETRVLWTINYEQFVTEFKLKAC 375
Query: 279 IDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH 338
D V + + + +AM++ K+ NS L+ S +Y E E R++
Sbjct: 376 YDFVVEKNNQQSGLLFNAMVKLC----KRSIRSNSDTLT-SCVYGENALEEYNRDLDPSK 430
Query: 339 VRASLVQLGELSFVDASSDS-------------------YSIDFEKIIEIAQNEEVESVV 379
L LS + AS S Y ++ II + + + VES++
Sbjct: 431 RMDKLQFEKYLSVMQASRPSMVTKMQTKSKQSSSSELGAYQVNVGNIIAVIKQKMVESII 490
Query: 380 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG 439
+++G + R+F+LL LLE +I+D + K+ +L+ + + + ++++ +
Sbjct: 491 KQKFGDNGLRVFKLLLIKN-LLEPKQIADLAMIPIKECKALLFNMMQKNIIRLQEVPRSS 549
Query: 440 ARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 486
+ F L+ V+ + + +++F A N R++ EL K++L+
Sbjct: 550 DHFANRTFYLFFVDLPSIIRDFTEDIFKAIYNTRERLNSELAPHKDMLD 598
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 5 YGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE--LSDEQVKNALLVLIQQN 62
Y K A+ ++ FGD V+KV E L+ +G + + + + + + +++K LLVLIQ N
Sbjct: 2 YEQKLAIGIVNEAFGDDVSKVFEFLVHRGKSSFKIINQALQGTVGLKRIKQCLLVLIQHN 61
Query: 63 CVQAFTTEQPDG--------FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCV 114
P G D +++ Y + N +HR+RF KF+ + +
Sbjct: 62 LATFEEFLIPLGKDEQESLTPGDPFPSDSVYEAIIVNAIHRLRFPKFINFIKVSKGDEAA 121
Query: 115 ELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRET----------LVKLVTAHYVE 164
+++ L++HGRL + + +A + + DS +T KL+ ++
Sbjct: 122 FILEELIDHGRLPMDMILKQASAYSRAA-----DSFEDTEEITKRFEDIFTKLIMDQFIM 176
Query: 165 RCPASEPL-----LMPISEEEGPARKKGSKSAKKIGEP 197
R P P+ I++E + S S KK +P
Sbjct: 177 RAPRPRPINDQDQSNAINKEAKKTKDSQSSSNKKEADP 214
>gi|195109104|ref|XP_001999130.1| GI23238 [Drosophila mojavensis]
gi|193915724|gb|EDW14591.1| GI23238 [Drosophila mojavensis]
Length = 522
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/477 (19%), Positives = 193/477 (40%), Gaps = 60/477 (12%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
FG +V V +CL T + T + ++V AL VLI+ V +F + + F
Sbjct: 17 FGKVVQAVADCLFSATTRTLSQIVSSTNFARKEVVLALSVLIKFRLV-SFEPSKNNPFL- 74
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+Y + ++++ +R+++++ ++ ++ + + LL G T + +
Sbjct: 75 -----AEYALRREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNAGSETATALLLKC-L 128
Query: 138 SEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEP 197
++ E ++ R+T +K+++ H++ + P L+P E++ P
Sbjct: 129 ADGENKAESAETYRDTFLKMISDHFIIKLPE----LVPGDEQDEAV-------------P 171
Query: 198 ETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADE 257
+ + LP N++ + + + GE L+
Sbjct: 172 KFQRNECDYFMLP----------NIDLKILAQ------IQKGEATLSKALD--------- 206
Query: 258 QSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLS 317
+ V+ N++ F + R + L + AA S +L + + K S ++
Sbjct: 207 TACVWSLNYDRFHQEFRDDIMKLAIERKLGENAAECFSFILNLVYNTTDPWQRKASNLIT 266
Query: 318 LSSIYEEVIKSEAGRNMT--LDHVRASLV--QLGELSFV-DASSDSYSIDFEKIIEIAQN 372
I +E+ + + LD +V LG L V D Y +D EK E
Sbjct: 267 FVEIKQEIERKSNNLELIKYLDQYICLIVDDSLGFLRKVGDTGGGQYQVDMEKTFESLAF 326
Query: 373 EEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL-- 430
VE+V+++R+G A RIFR++ + + +E + + + K+A + Y L+++ ++
Sbjct: 327 ACVEAVITERFGSKAARIFRVI-RFKKFIEQEDLQKEAMIPAKEAKSLAYNLFQEQFIHV 385
Query: 431 --LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+ + F L+++ + + +LD F + N R +YE K L+
Sbjct: 386 KVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCFKSLYNTIRRSNYEKHEHKGLI 442
>gi|195571401|ref|XP_002103691.1| GD18841 [Drosophila simulans]
gi|194199618|gb|EDX13194.1| GD18841 [Drosophila simulans]
Length = 522
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/490 (20%), Positives = 198/490 (40%), Gaps = 76/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V F +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALTVLVKFRLVD-FAASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIKRP--ELLVGDDQDENVP--KFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N + F + R +D + L + AA +L M T E+K
Sbjct: 206 ----DSHMVWNLNHDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK- 260
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSY 359
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 -------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVY 313
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+D E E VE V+++R+G A RIFR++ + + +E + + + K+A
Sbjct: 314 VVDMEHAFESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKS 372
Query: 420 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ Y L+++ ++ ++ + G + F L++V + + +LD + + N R +
Sbjct: 373 LAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVREKDTVRMLLDASYKSLYNTIERSN 432
Query: 476 YELDREKELL 485
+E + K L+
Sbjct: 433 FEKNEHKGLI 442
>gi|21357263|ref|NP_650207.1| CG12267, isoform A [Drosophila melanogaster]
gi|320542649|ref|NP_001189212.1| CG12267, isoform B [Drosophila melanogaster]
gi|15291747|gb|AAK93142.1| LD24919p [Drosophila melanogaster]
gi|23171112|gb|AAF54828.2| CG12267, isoform A [Drosophila melanogaster]
gi|220944880|gb|ACL84983.1| CG12267-PA [synthetic construct]
gi|220954778|gb|ACL89932.1| CG12267-PA [synthetic construct]
gi|318068760|gb|ADV37303.1| CG12267, isoform B [Drosophila melanogaster]
Length = 522
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 99/490 (20%), Positives = 198/490 (40%), Gaps = 76/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+LS ++V AL VL++ V F +
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKLSRKEVAFALAVLVKFRLVD-FAASKA 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 71 NPFL------AEYALRREDVLCLLRYPRYVHLVQTKYGNVGASISEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HY+ + P E L+ +E P K +
Sbjct: 125 LKC-LAENENKAESPESYRNTFLEMITDHYIIKRP--ELLVGDDQDENVP--KFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ EA T E R
Sbjct: 180 FFRHP-NIDLQLLAKIQKGEA-----------------------TLAEAR---------- 205
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
+ +V+ N + F + R +D + L + AA +L M T E+K
Sbjct: 206 ----DSHMVWHLNHDRFHQDFRDTIMVDAIERKLGENAAECFKFILKIMYNTTDPWERK- 260
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSY 359
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 -------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVY 313
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+D E E VE V+++R+G A RIFR++ + + +E + + + K+A
Sbjct: 314 VVDMEHAFESLAFACVECVITERFGSKAARIFRVI-RCKKYIEQEDLQKEAMIPSKEAKS 372
Query: 420 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ Y L+++ ++ ++ + G + F L++V + + +LD + + N R +
Sbjct: 373 LAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSN 432
Query: 476 YELDREKELL 485
+E + K L+
Sbjct: 433 FEKNEHKGLI 442
>gi|195036890|ref|XP_001989901.1| GH18539 [Drosophila grimshawi]
gi|193894097|gb|EDV92963.1| GH18539 [Drosophila grimshawi]
Length = 522
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 89/483 (18%), Positives = 190/483 (39%), Gaps = 62/483 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+L+ ++V AL VLI+ V+ F +
Sbjct: 12 ILEQCFGQVVQAVADCLFSATTRTLSQIVSTTQLARKEVALALAVLIKFRLVR-FEPSKS 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ F +Y + ++++ +R+++++ ++ ++ + + LL G T
Sbjct: 71 NQFL------PEYSLKREDVICLLRYSRYIHLVQTKYGNVGASIAEELLNSGSETATSCL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ S + + ++ R T ++++ HY+ + P + +E+ K +
Sbjct: 125 LKCLS-DGDNKAESAETYRTTFIQMIADHYIIKTPE-----LVTGDEQDDCVPKFLSNEC 178
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ + RK D
Sbjct: 179 DFFVPPNIDLQLL---------------------------------AQIRKGDA----TI 201
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKN 312
A + +V+ NF+ F + R + L + AA S +L + K
Sbjct: 202 ASATDGGIVWSLNFDRFHQEFRDDIMKLAIERKLGETAAECFSFILSLIYKTTDPWQRKA 261
Query: 313 SVPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFV----DASSDSYSIDFEKI 366
S ++ I + + + ++ LD SL+ L F+ D Y ID E
Sbjct: 262 SNHITFVEIKQAIERKSNNLDLMKYLDQY-ISLITDDSLGFLRRVGDMGGGQYVIDMEHA 320
Query: 367 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 426
E VESV+++R+G A RIFR++ + + +E + + + K+A + Y L++
Sbjct: 321 FESLAFACVESVITERFGSKATRIFRVI-RFKKYIEQEDLQKEAMIPAKEAKSLAYNLFQ 379
Query: 427 DGYL----LMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREK 482
+ ++ + + F L+++ + + +LD + + N R ++E + K
Sbjct: 380 EQFIHVKVIKKPGGGGSGPAKAFYLFQIKEKDTVRMLLDNCYKSLYNTIRRSNFEKNEHK 439
Query: 483 ELL 485
L+
Sbjct: 440 GLI 442
>gi|194901712|ref|XP_001980395.1| GG18993 [Drosophila erecta]
gi|190652098|gb|EDV49353.1| GG18993 [Drosophila erecta]
Length = 522
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 94/490 (19%), Positives = 195/490 (39%), Gaps = 76/490 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ FG +V V +CL T + T+ S ++V AL VL++ V ++Q
Sbjct: 12 ILEQCFGKVVQAVADCLFSATTRTLGQITSATKFSRKEVAFALAVLVKFRLVDFAASKQN 71
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A +Y + +++L +R+ +++ ++ ++ + + L+ G T +
Sbjct: 72 SFLA-------EYALRREDVLCLLRYPRYVHLVQTKYGNVGASIAEELINSGSDTATGIL 124
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
+ +E E +S R T ++++T HYV + P LM +++ K +
Sbjct: 125 VKC-LAENENKTESPESYRNTFLQMITDHYVIK----RPELMVGDDQDENVPKFETNECD 179
Query: 193 KIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDEC 252
P I+ Q++ + GE D
Sbjct: 180 FFRHP-NIDLQLLA----------------------------KIQKGEATLAD------- 203
Query: 253 GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAAN----VLSAMLQATSSAEKKV 308
A + +V+ N++ F + R +D + L + AA +L M T E+K
Sbjct: 204 --ARDSHMVWNLNYDRFHQDFRDTIMVDAIERKLGENAAECFRFILKIMYNTTDPWERK- 260
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR-----ASLVQLGELSFV----DASSDSY 359
LS + E+ ++ ++ LD ++ SL+ L F D Y
Sbjct: 261 -------LSNQITFVEIKQAIERKSNNLDLMKYLDQYISLLTEDSLGFFRRVGDMGGGVY 313
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
+D E + E V+++R+G A RIFR++ + +E + + + K+A
Sbjct: 314 VVDMEHAFQSLAFACAECVITERFGSKAARIFRVI-RCKVYIEQEDLQKEAMIPSKEAKS 372
Query: 420 ILYKLWKDGYLLMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ Y L+++ ++ ++ + G + F L++V + + +LD + + N R +
Sbjct: 373 LAYNLFQEQFIHVKIIKKPGGGSNGPAKAFYLFQVKEKDTVRMLLDASYKSLYNTIERSN 432
Query: 476 YELDREKELL 485
+E + K L+
Sbjct: 433 FEKNEHKGLI 442
>gi|328859337|gb|EGG08446.1| hypothetical protein MELLADRAFT_84617 [Melampsora larici-populina
98AG31]
Length = 604
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
H++T +G ++ LLR+G L ++ + + L+ +++AL+ LIQQNCV +
Sbjct: 12 HLLTTLYGHACGEIGSLLLRRGRLPFSSLVKLSSLTSHSIRSALITLIQQNCV-CHSETS 70
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
+ + + V+ + IL R+RF K++TI+ + F + +++ +LE+G++ + Q+
Sbjct: 71 SASTSTQTNSPEYFEVIPNEILARIRFGKYITIVDELFGIESSSIIEFVLENGKIRIGQL 130
Query: 132 F 132
Sbjct: 131 I 131
>gi|308800048|ref|XP_003074805.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
gi|116061345|emb|CAL52063.1| Rpc3 DNA-directed RNA polymerase III 62 kDa polypeptide (RNA pol
(IC) [Ostreococcus tauri]
Length = 390
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 370 AQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY 429
++ + VE+V+ R G A RI+R+L ++ LE +++D + V KD ILYKL K GY
Sbjct: 234 SRRKHVEAVIRARLGVQALRIYRMLGQTQ--LEQKQVADLSMVPVKDTRDILYKLLKFGY 291
Query: 430 LLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNL 487
+ M+++ T A LW+V+ ++ V E+ N+ LR+ +L ++
Sbjct: 292 VQMQEIARTNDHAPSRTNYLWRVDCTVVDAVVKRELTQTLTNIHLRLLSQLQLHCRMIQ- 350
Query: 488 PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 525
P+D R ++ R V +LE ++LD+ +L+F+
Sbjct: 351 PSDSRHCRKEEVS---RDVLDILELGALRLDELLLVFN 385
>gi|167517589|ref|XP_001743135.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778234|gb|EDQ91849.1| predicted protein [Monosiga brevicollis MX1]
Length = 484
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/478 (18%), Positives = 182/478 (38%), Gaps = 91/478 (19%)
Query: 3 TEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
EY A +I + FG +VA V L + R+ S + ++ A+ VLIQ
Sbjct: 22 AEYRLDCAASIIESQFGPIVASVFRVLAIQPCHVRRLYVLCKGTSHKNIRKAVTVLIQHG 81
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
++ E P +A +++L R+ F + ++ + + + L
Sbjct: 82 MLEYEEAEHPIFYAK-----------IEDVLLRLHFPAYAHVIGTMYGTLAERIFEQLFL 130
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
HG L+ L L T+V+L Y + L + ++
Sbjct: 131 HG-------------------LMRLSRLMGTVVQLTGGQYSQ--TEILELFRTLVQDARV 169
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
+ G+K ++ P+ + N++ + +++ +NN++ + R
Sbjct: 170 IQLHGAKDSELFTFPDECK-------------------NLDKLISQEDGATNNISADQHR 210
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
+ + +L+ + + ++RA + D AA ++ A+
Sbjct: 211 YWTICHTQ------------------LLDKLQTRWGVTYIRAKISDEAAIIVEALAALRQ 252
Query: 303 SAE-KKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVR---ASLVQLGELSFVDASSDS 358
SA ++V T+ +K + ++ +H+ L+ GE V A +
Sbjct: 253 SASPEEVATQ--------------LKRMGAKQLSREHIAEWLQVLISEGEEIVVQAGMYA 298
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y + + +++ VE + +RYG ++ RI+ +L + LE D++S A
Sbjct: 299 YMYNHSAVATVSRTRAVEKTIEERYGIESMRIYNILCEK-HYLEQDQLSKIAIAANFKAT 357
Query: 419 KILY-KLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
++L +LWK G++ + + R + LW + + +LDE H A NL R
Sbjct: 358 RLLINRLWKAGFVQIYEAARAQDRTTGRYMHLWTADPEAGRHLILDECIHIATNLIQR 415
>gi|393906030|gb|EJD74152.1| hypothetical protein LOAG_18495 [Loa loa]
Length = 519
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 87/442 (19%), Positives = 173/442 (39%), Gaps = 70/442 (15%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q ++ + +++ A+++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGSVLLNEAVPLPVIFQRLR--NQFRIPEIRRAMVILEQHGILQ- 65
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
F + Y +IL VR A+ + + + + + ++ GRL
Sbjct: 66 --------FTQDERQRIIYSAQVIDILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRL 117
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
T R + + V ++ ++ +L +V R P E
Sbjct: 118 TCSSCIRRVVARLE----VSINEVKTAFARLAETQFVMRYPKVESNFC------------ 161
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
G +K +P + ++ A +E +V K + N++ E
Sbjct: 162 GCPIFEKHPDPFIMPDVILNA------------KKLEINVDSKSRKRKNLSNEED----- 204
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA--HLDDGAANVLSAMLQATSSA 304
D G ++ + N+ F R LR + ++ + + + L +L+ +
Sbjct: 205 ---DPDG-----NIYWHLNYIRFERYLRDEMVVNAYESGDAVHENCVKTLRILLKIS--- 253
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFV-----DASSD 357
++K +S S +V+++ ++L + +L L E + D++
Sbjct: 254 --EIKADSSAAASFPISIHDVLRAANSNEVSLGKHDIEVALRLLCESGGIVRKVGDSAGG 311
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+ IDFEK I VES + +R A R+FRLL + G LE D + + +A
Sbjct: 312 LFVIDFEKAIATHCQRHVESAIRERLDMRAVRVFRLLMQKG-FLEEDHVEKLAMLSSTEA 370
Query: 418 PKILYKLWKDGYLLMEKLVVTG 439
K+ Y+L + G++LM+ + T
Sbjct: 371 RKLCYQLLEQGFVLMKHVAKTN 392
>gi|167382764|ref|XP_001736255.1| DNA-directed RNA polymerase III subunit RPC3 [Entamoeba dispar
SAW760]
gi|165901422|gb|EDR27505.1| DNA-directed RNA polymerase III subunit RPC3, putative [Entamoeba
dispar SAW760]
Length = 499
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 94/489 (19%), Positives = 198/489 (40%), Gaps = 63/489 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ +CLL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKCLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L
Sbjct: 69 EP------------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISTTLITYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISE 178
+ +F +S + DL + + +VK +V +ER P + +
Sbjct: 117 EDIFAVLQSKNIDVKENDLKIVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQ 176
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E R+KG + K+ V E +P + VG K ++
Sbjct: 177 NEN-VRRKGIRKRGKV-------DVVTENPIPKKV-----------KVGIDLKAQTSINS 217
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
K + +D V+ N E + + +D V D+ A ++ M
Sbjct: 218 STKVED----------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMW 267
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 358
++ + V + +L I E I+ M+ D ++ + +FV + ++S
Sbjct: 268 DLSAYGKTPVDFA-ILCQNLREIAPETIRKYL-EMMSRDE--PFIIAKNQSAFV-SDTNS 322
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+ + + + +ES + ++G I R+L K +L +I+D E +
Sbjct: 323 FKLQVDAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGDEVK 381
Query: 419 KILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ LY++ + GY+ +++ + R ++ + +W +N + +L E + +N R+
Sbjct: 382 RGLYQMHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKL 441
Query: 477 ELDREKELL 485
E+ + L+
Sbjct: 442 EISSKSALI 450
>gi|260784191|ref|XP_002587152.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|260784193|ref|XP_002587153.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
gi|229272290|gb|EEN43163.1| hypothetical protein BRAFLDRAFT_241929 [Branchiostoma floridae]
gi|229272291|gb|EEN43164.1| hypothetical protein BRAFLDRAFT_241950 [Branchiostoma floridae]
Length = 204
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G++V V L KG +++ T+L +VK AL VLIQ N +
Sbjct: 12 LLQHQYGEIVENVGTFLASKGSFALRDITDGTKLGVNEVKKALCVLIQHNMMD------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
F + +Y V + +L R+ +++ + LV+ LL HG++ + Q+
Sbjct: 65 --FEKNRRGLIEYTVHINKVLLITRYPRYIYCAKTLYGDVGEFLVEELLSHGQMLMSQVC 122
Query: 133 ----DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
DR + +EG +D +R+T V+LV H+++R AS P
Sbjct: 123 RRVSDRITQALEEGQSMDEFQVRKTFVELVKTHFLQRV-ASPP 164
>gi|407044497|gb|EKE42630.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 499
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 96/489 (19%), Positives = 202/489 (41%), Gaps = 63/489 (12%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
V ++ N FG V ++ + LL K P T ++ R ++ AL VL+ + ++ ++ E
Sbjct: 11 VQIVENQFGKFVGQITKYLLVK-PSTIFDLWRQCHQPYSKMYEALFVLLHHSILK-YSNE 68
Query: 71 QPDGFADGPKANTQYVVLFDN--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
+P ++ D IL +R + F+ ++ Q+F + E+ L+ +G L
Sbjct: 69 EP------------VIISIDQNRILFSLRHSHFIALMQQKFGELAKEISITLITYGMLNF 116
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVK----------LVTAHYVERCPASEPLLMPISE 178
+ +F +S + DL ++ + +VK +V +ER P + +
Sbjct: 117 EDIFAVLQSKNIDVKESDLKAVFDEMVKEKYITRVNKNVVDLVQLERTSTPAPSFSTVKQ 176
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
E R+KG + KI V E +P + V D+ + + N N+ T
Sbjct: 177 NEN-VRRKGIRKRGKI-------DVVTENPIPKKV-------KVGIDL-KAQTNLNSTTK 220
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAML 298
E +D V+ N E + + +D V D+ A ++ M
Sbjct: 221 AED-------------SDNSQPVWTVNIEVYNKETILYKLLDLVNKKFDNKAVPIIEKMW 267
Query: 299 QATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDS 358
++ + V + +L I E I+ M+ D ++ + +FV + ++S
Sbjct: 268 DLSAYGKTPVDFA-ILCQNLREIAPETIRKYL-EMMSRDE--PFIIAKNQSAFV-SDTNS 322
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+ + + + +ES + ++G I R+L K +L +I+D E ++
Sbjct: 323 FKLQVDAATAFLKGVMIESCIQSKFGVIGASIHRVL-KIKHILTDSQIADLLIGEGEEVK 381
Query: 419 KILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ LY++ + GY+ +++ + R ++ + +W +N + +L E + +N R+
Sbjct: 382 RGLYQMHQAGYINGQEVPKSNIRGGKNSYYMWSINFSQINAILLSETAKSLMNTMDRLKL 441
Query: 477 ELDREKELL 485
E+ + L+
Sbjct: 442 EISSKSALI 450
>gi|384496944|gb|EIE87435.1| hypothetical protein RO3G_12146 [Rhizopus delemar RA 99-880]
Length = 379
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 128/300 (42%), Gaps = 33/300 (11%)
Query: 260 VVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLS 319
+ + N++ F R+ ID ++ A ++ A + K +K ++S +
Sbjct: 81 IFFSVNYDKFNMLFRNDAIIDFATERINRSAGQIVKAFFEYGKDKMKTLKEQDSPSATPV 140
Query: 320 SIYEEVIKS---------------EAGRNMTLDHV---RASLVQLGELSFVDA----SSD 357
I V K+ E + +L + +L+++ F+ + ++
Sbjct: 141 HIANVVTKTDVATRGDIVLPKDPLEPNKKPSLQEIVRGYITLLKMDPAGFIKSKDERGAN 200
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
Y+++FEK+ + +E +V +RYG R+F++L + G+L E+ +I + KD
Sbjct: 201 HYAVNFEKLRNTMKRRIIEGLVRERYGVATCRVFKILIEKGKLDES-QIQKLAMLPAKDT 259
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+ L L G++ ++++ T R F LW V + ++ VL + + NL R
Sbjct: 260 REKLALLKTKGFVEIQEVPRTADRAPGRCFHLWYVPLEKCYQEVLVDSYRIICNLQQRKR 319
Query: 476 YELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 527
EL K L++ A K D ++ KV LE ++ ++D +++ DF
Sbjct: 320 QELKLRKRLVDKIARKDVMENPDLLGEGEKKEIEQMNKVFERLEVAKSRVDLVVMILRDF 379
>gi|145343676|ref|XP_001416439.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
gi|144576664|gb|ABO94732.1| DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase
C subunit 3) [Ostreococcus lucimarinus CCE9901]
Length = 392
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 367 IEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWK 426
+ + + + VE+V+ R G A RIFR+L ++ LE ++++ + V KD ILYKL K
Sbjct: 230 VHLRRQKHVEAVIKTRLGAQALRIFRVLIRNQ--LEQKQVAELSMVPVKDTRDILYKLLK 287
Query: 427 DGYLLMEKLVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 480
GY+ M+++ T A LW+V+ + K V E+ A N+ LR +E+ R
Sbjct: 288 FGYVQMQEIARTHDHAPSRTNYLWRVDCSDVEKTVKRELIQALTNVHLRKLFEVRR 343
>gi|20070909|gb|AAH26793.1| Polymerase (RNA) III (DNA directed) polypeptide C [Mus musculus]
Length = 202
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ HFG++V K+ L+R G + + T+ S +QVK AL VLI N V
Sbjct: 12 LLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHNLVL------- 64
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL---- 128
+ + +Y +L +R+ +++ + +V+ LL +G++T+
Sbjct: 65 --YHVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYGDTGELIVEELLLNGKMTMSAVV 122
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167
K++ DR + ++G +D + V+L H+V+RCP
Sbjct: 123 KKVADRLTETMEDGKTMDYAEVSNAFVRLADTHFVQRCP 161
>gi|389638242|ref|XP_003716754.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|351642573|gb|EHA50435.1| hypothetical protein MGG_03225 [Magnaporthe oryzae 70-15]
gi|440465153|gb|ELQ34493.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae Y34]
gi|440489696|gb|ELQ69325.1| RNA polymerase III subunit Rpc82 [Magnaporthe oryzae P131]
Length = 667
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 117/253 (46%), Gaps = 16/253 (6%)
Query: 289 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE 348
G AN +S +++ +K + + S P + + + E +K + + L +R L+ L E
Sbjct: 417 GGANGIS-VIEYDEELDKLLHRQQSAPPTTNGMKESKVKFKEPKESRLSQMRQHLLLLCE 475
Query: 349 LS---FVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDK 405
S + +++DFE ++ Q E+++V+ + GR + R+ R++ K G++ E
Sbjct: 476 SSQGFLRHCGNGQWTVDFEPLVRRLQETELDTVLERTVGRHSLRLIRIVRKRGKVDEK-S 534
Query: 406 ISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEM 463
+ + + K KI+ ++ G++ ++++ R +S LW + + +LD
Sbjct: 535 LPNQAMMSKGTVHKIMLEMQMHGFVDVQEVPKDSTRNAKSTIFLWFCHTESSLSQLLDNT 594
Query: 464 FHAALN-LSLRVSYELDREKELLNLPADKRTGPLQ--------DRYNRIRKVRILLESSQ 514
+ L L +R + + + L + G Q DRY++ R++ + +
Sbjct: 595 YKTMLRCLQVREVHRQNAREVLRFVERPDIKGREQEALEKKYFDRYDQYRRIEDKILAHV 654
Query: 515 MKLDDAILLFHDF 527
M+LDD I + D+
Sbjct: 655 MRLDDIISILRDY 667
>gi|196001967|ref|XP_002110851.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
gi|190586802|gb|EDV26855.1| hypothetical protein TRIADDRAFT_54190 [Trichoplax adhaerens]
Length = 512
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 95/480 (19%), Positives = 196/480 (40%), Gaps = 81/480 (16%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
FG++V V CL +KG +++ + ++LS ++VKN+L +L+Q + + +T +G+
Sbjct: 47 FGEVVEHVVSCLAQKGGAPLRDIIQRSKLSKDEVKNSLCILLQHDLID-YTLSNTNGYL- 104
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
Y + D IL R+ +++ F +V+ +L +G++ ++ D+ KS
Sbjct: 105 -------YRLKIDRILLCNRYPRYIYASKFLFGDIAELIVEEILLNGQIIKNELLDQIKS 157
Query: 138 S-----EKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAK 192
EK+ D + +L +++ E G R +
Sbjct: 158 RLADIVEKDNTPPDPTEVDTAFDELARNNFI--------------IEVGGGRMLVKSEVE 203
Query: 193 KIGE--PETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV--TPGEKRKHDVLE 248
++ + P T + E + P + G K + S ++ P KR H
Sbjct: 204 QVDKMTPTTNNKPSEEVSTPKK--------------GNKRQRSEDIPSAPVSKRLH---- 245
Query: 249 LDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKV 308
E + + ++ + D AA ++ +ML+ ++ ++
Sbjct: 246 -----------------LEEGTNEINYMMIVEVIGKKYDSIAAAIMRSMLELDANPQESD 288
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIE 368
N+V L + IKS + + + ++ L + + + D ++ D I
Sbjct: 289 IITNAVRL-------KEIKSHLPKEVNV--TKSILEEYLTILYEDKQLNTGDPDILHIFS 339
Query: 369 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 428
+E +V +R+G + RIFR++ + LE KI D + KDA ILY L +
Sbjct: 340 EIVKRTLECLVQQRFGSNFGRIFRIIVHK-KSLEQKKICDMAMLPSKDAKAILYTLMVEK 398
Query: 429 YLLMEKL--VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL--DREKEL 484
++ M+++ + F L+ ++ VL + A N +R +E+ +R++E+
Sbjct: 399 FIRMQEIPRSLDCVASKTFHLFSLDILDTCTVVLSRSYKAIANSIIRRDWEVNSNRQREM 458
>gi|242001606|ref|XP_002435446.1| conserved hypothetical protein [Ixodes scapularis]
gi|215498782|gb|EEC08276.1| conserved hypothetical protein [Ixodes scapularis]
Length = 436
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 133/350 (38%), Gaps = 55/350 (15%)
Query: 56 LVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVE 115
+VLI N V F PK +Y++ D +L+ +R+ ++ +
Sbjct: 1 MVLIHHNIV---------DFRLHPKGYVEYIIDADRVLYMLRYPRYTHCAKTLYGDTGEL 51
Query: 116 LVQGLLEHGRL----TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
+V+ LL++GR+ L+++ R + S +++R V LV H++ R PA EP
Sbjct: 52 IVEELLQNGRMCMSSVLRKVLGRLQGSHTA------EAVRSKFVDLVQTHFLCRVPAPEP 105
Query: 172 -------LLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVES 224
+ + EE+ + K S S G T P+ SV E
Sbjct: 106 GGPDAKVPTLILLEEDMYSVPKASPSPSIAGSQPTP---------PVHLQLLSVAAEDED 156
Query: 225 DVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA 284
G K S + ++ + ++ NFE F R + +
Sbjct: 157 QEGPPSKKSRVES-----------------QPDEGIYWQVNFERFHLFFRDQLLVQAASR 199
Query: 285 HLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLV 344
L A V+ +L+ + K+ S P+S +++++ K + LD + LV
Sbjct: 200 RLGLKAGEVVRTLLR-LAETRTHPKSAQSCPVSKQEVHQQLHKEISLSQKELDSFLSLLV 258
Query: 345 Q--LGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 392
+ L + D + +D + + + S V R+G + RIFR
Sbjct: 259 EDPLRLVQRSDERGGMFCVDLHRGLRVLAEAFFASTVQDRFGAKSCRIFR 308
>gi|384494305|gb|EIE84796.1| hypothetical protein RO3G_09506 [Rhizopus delemar RA 99-880]
Length = 376
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 32/302 (10%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPL 316
+ +V + N+E + R+ D ++ A VL A L+ K VK + S
Sbjct: 76 DPTVFFALNYEKYNIAFRNNMITDFATDRINRTAGIVLKAFLRNGKDKMKIVKEETSAAS 135
Query: 317 SLSSI----YEEVIK----------SEAGRNMTLDHVRASLVQL------GELSFVDA-S 355
+ + I + EV++ S + T+ V+L G L+ D
Sbjct: 136 TPNHIANMLHPEVLERGDIILPRDPSNPKKKPTVSETIEGYVKLLKTDTAGFLTTKDQLG 195
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
+ Y+++FEK+ + E+ +++RYGR RI R+L G++ E+ +I + + K
Sbjct: 196 PNHYAVNFEKLRYNMKKRLFENSITERYGRAVCRIVRILLDKGKMDES-QIQKISMLPLK 254
Query: 416 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
D + L L+ DG + ++++ + R + F LW V + ++ +L + + +NL R
Sbjct: 255 DIRQKLEMLFADGIVEIQEVPRSTDRATSRSFHLWHVPLEKCFEDLLTKAYKIIVNLQQR 314
Query: 474 VSYELDREKELLNLPADKRTGPLQDRYNRIRKVRI--------LLESSQMKLDDAILLFH 525
EL + LL K D N I K + +E S+ +LD+ ++
Sbjct: 315 KVEELQQRSRLLEKMNRKDVIANMDLLNEIDKAEVGNMNKIIERIEVSKARLDEMAMILR 374
Query: 526 DF 527
DF
Sbjct: 375 DF 376
>gi|17506119|ref|NP_491807.1| Protein C48E7.2 [Caenorhabditis elegans]
gi|351050084|emb|CCD64205.1| Protein C48E7.2 [Caenorhabditis elegans]
Length = 544
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 107/522 (20%), Positives = 208/522 (39%), Gaps = 89/522 (17%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L+ K ++S+ ++ ++ LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLSTLFYKLKGQISNTLIRKSVSTLIN-- 62
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T D T YV D I H + + I + + L+
Sbjct: 63 --FGFVTFHLD-----TNNRTTYVADSDQIQHVISSPRACLIAKTLYGPAAESICVELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R +++++ D ++++ +L AH++ R P+ E SE G
Sbjct: 116 QGRLTVSETIRRIQATDETAVFSD---IKKSFEELAAAHFLIRVPSVE------SEIHGC 166
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
Q V P F++ TN+ + +KE S + + R
Sbjct: 167 P-------------------QFVTNFDP-----FAISTNI---MEKKEGTSTSDSTSNNR 199
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA------ 296
K E G A + +R N+ F LR + ID++ G L+
Sbjct: 200 KRKADSTPEDGDAGQ---YWRINWIRFNGYLRDELIIDYLIGGGSKGTMTNLNVKKEETI 256
Query: 297 ----------MLQATSSAEKKVKTKNSVPLSLSSIYEEV-----IKSEAGRNMT------ 335
+ Q + K+ + P+S+ SI + + E G N+
Sbjct: 257 EDPQGDRTQYITQNVAHLMFKINETRAKPMSMESITASLTDLQRLVKENGLNLAKPDIEL 316
Query: 336 -----LDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 390
+D + +LGE ++ + +D + I ES++ +++ A R+
Sbjct: 317 ACQILVDESDGIIRKLGE-----SNGGIFIVDIRRAIRQICRHHCESLIREQFEGRAIRV 371
Query: 391 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLW 448
RLL ++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+
Sbjct: 372 MRLL-ENRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLY 430
Query: 449 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 490
V+ + +++ NL +R +E K +L+ A+
Sbjct: 431 YVDLPRTIRGLVEYTCKLVRNLIVRQRHERTENKSVLDKDAN 472
>gi|268567834|ref|XP_002640090.1| Hypothetical protein CBG12577 [Caenorhabditis briggsae]
Length = 546
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 114/526 (21%), Positives = 207/526 (39%), Gaps = 95/526 (18%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +VAKV E +L++ L +K ++S V+ AL LI
Sbjct: 5 KYETQMCVIMVEDIFGKIVAKVLETVLKESCHLPTLLLKLKGQMSSVLVRKALSTLINFG 64
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFL----TILSQEFDQQCVELVQ 118
V F+ T YV D I + + + T+ + CVEL+
Sbjct: 65 FV---------SFSLDTNNRTTYVADADQIQYVISAPRACLIAKTLHGPAAESICVELI- 114
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
GRLT+ + R +S+++ V+ ++ + +L A ++ R PA E L
Sbjct: 115 ---SQGRLTVSETIRRIRSTDES---VEFSDIKHSFEELARAQFLIRVPAVESNLY---- 164
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNV-ESDVGEKEKNSNNVT 237
G P+ L + +F + N+ E + +S N
Sbjct: 165 ----------------GCPQ----------LTVNFNQFEMPKNIMEKKEPQTRGSSFNDA 198
Query: 238 PGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAM 297
KRK D D + +R N+ F LR + ID +L G +
Sbjct: 199 SSRKRKADASPEDM-----DAGQYWRINWARFNGYLRDELIID----YLIGGGSTATMTH 249
Query: 298 LQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRN--MTLDHVRASLVQLGELS----- 350
L ++E+ V ++ ++ + KS R +++D + S+ L +L
Sbjct: 250 LNVRKNSEEDVPQQDRTQYITQNVAHLMFKSNELRANPLSMDSITVSITDLQKLVRENEL 309
Query: 351 -------------FVDAS-------SDS----YSIDFEKIIEIAQNEEVESVVSKRYGRD 386
VD S DS Y++D I ES++ +++
Sbjct: 310 DLSKPDIELACQILVDESDGIVRKVGDSNGGLYTVDIRHGIRQICRHHCESLIREQFEGR 369
Query: 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--Q 444
A R+ RLL +S L+ +++ + + K+A ++LY L ++GY+ + + + Q
Sbjct: 370 AIRVMRLL-ESRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPART 428
Query: 445 FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 490
F L+ V+ + +++ NL LR +E K LL+ A+
Sbjct: 429 FYLYYVDLPRTIRGLVEYTCKLVRNLILRQRHERTENKALLDKDAN 474
>gi|229594701|ref|XP_001022455.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila]
gi|225566695|gb|EAS02210.2| hypothetical protein TTHERM_00989510 [Tetrahymena thermophila
SB210]
Length = 558
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/343 (20%), Positives = 143/343 (41%), Gaps = 56/343 (16%)
Query: 154 LVKLVTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEA 213
LV+ + ++++++ + + EG RK+ K+ K + + + + Q +E ALP +
Sbjct: 216 LVQQLQSYFIQKYKGEDK-----DKVEGQIRKQVKKTKKNLIDDDELLQNELEIALPQKE 270
Query: 214 MRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRL 273
+ E+++N+++ D L D A++Q + Y+ N FI
Sbjct: 271 AK-----------KEEQQNTSD---------DYLIYDP---ANKQPLSYKINVRQFIHVF 307
Query: 274 RHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIK-----S 328
R + L A ++ ML + + K + P++L I +IK +
Sbjct: 308 RTEEISKLAEGKLSVQAKQIIKLMLDNSQRIGPAREIKTTEPMTLDQIKNLLIKAKGKDT 367
Query: 329 EAGRNMTLDHVRASLVQLG----ELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYG 384
+A ++ L + + + G + F++ + YS++ EKII + + +V ++Y
Sbjct: 368 QAVKDENLQNFLRVMKRDGGKFISIDFINGK-EMYSVNVEKIINKMKIRHIAQIVERKYS 426
Query: 385 RDAYRIFRLLSKSGRL------------------LETDKISDTTFVEKKDAPKILYKLWK 426
A RIFR++ K L E +KIS+ KD K L KL
Sbjct: 427 LIAGRIFRIMRKYKHLEEKAVKLILKIFVNTLNVFEINKISEIALQSLKDTQKYLNKLST 486
Query: 427 DGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 469
+GY+ ++ + ++K + Q + +++ + LN
Sbjct: 487 EGYIDYIEVKEKDKTVNLLCMYKYDEQKVLSKTIEQYYQIRLN 529
>gi|297818842|ref|XP_002877304.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
gi|297323142|gb|EFH53563.1| hypothetical protein ARALYDRAFT_905475 [Arabidopsis lyrata subsp.
lyrata]
Length = 148
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 360 SIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPK 419
++DF+KII +AQ +++E+V++ + G ++ +IFR LSK L+ +I + KD
Sbjct: 8 NLDFDKIITLAQKDKMEAVITDKLGDESCKIFRFLSKEQTFLQDYEIKSAMGI-GKDLQD 66
Query: 420 ILYKLWKDGYLLMEKLVVT 438
L LW +G+L ++K +VT
Sbjct: 67 DLMTLWCEGFLTIQKEMVT 85
>gi|312377081|gb|EFR23998.1| hypothetical protein AND_11727 [Anopheles darlingi]
Length = 505
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 72/132 (54%), Gaps = 7/132 (5%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
++++ +KI E +E+++ ++YG A RIFR++ + R +E ++I V K+A
Sbjct: 305 FTVNAKKIFEQLTWSCIENIIVEKYGSKAARIFRVI-RMKRFIEQEEIQKEAMVPAKEAK 363
Query: 419 KILYKLWKDGYLLMEKLV-----VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
++ YKL ++ +LL++ + GA +S FL + RQIL +L+ + A N R
Sbjct: 364 QLTYKLMEENFLLIQTIRKPGGGSAGAPKSFFLFYVNQRQIL-SMLLESCYKALYNSITR 422
Query: 474 VSYELDREKELL 485
+++ K L+
Sbjct: 423 STHDKAVNKRLI 434
>gi|400597939|gb|EJP65663.1| RNA polymerase III subunit RPC82 [Beauveria bassiana ARSEF 2860]
Length = 642
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 464 WTVDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQ 522
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +R+ LD+++ A + +
Sbjct: 523 LKMIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQALDDIYKAMVRCLQTMQV 582
Query: 477 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E RE+ +L+ K T D+YN+ KV+ L M+LD+ + +F D+
Sbjct: 583 ERHRERNILSFVERKDVQGKEEEVMTSEHYDKYNKHLKVQEKLLGQVMRLDEMVAIFRDY 642
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 27/176 (15%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VL+QQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILSALLTKGRSTIAQLAQHTSLPPRFLRNGLSVLVQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + VR K L + ++ +LVQ LL+
Sbjct: 64 LLFHHT--------DSDSRGTSYEANSDACYNLVRSGKILEAIESQYGTAERDLVQTLLQ 115
Query: 123 HG--RLT-LKQMFDRAKSSEKEGN----------LVDLDS-LRETLVKLVTAHYVE 164
G R+ L Q F + ++S+ G+ L++ +S L L +L+ A VE
Sbjct: 116 LGFARIADLTQAF-KGRTSKTNGHTNGSTEMASGLIESESHLNAVLGRLIQAEIVE 170
>gi|340517829|gb|EGR48072.1| RNA polymerase III subunit [Trichoderma reesei QM6a]
Length = 638
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 105/236 (44%), Gaps = 23/236 (9%)
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--FV----DASSDSYSID 362
K P+ ++ +E+ S R LD +R L+ L E FV +++D
Sbjct: 409 KPNGGRPMKVT--FEDTATSSDNR---LDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVD 463
Query: 363 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILY 422
F++++E + E++ + + +GR R+ R+L + G+L E + ++K D +
Sbjct: 464 FDQVMERLRELELDGFIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAKML 522
Query: 423 KLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDR 480
+ G + ++++ R + W +R+ H+LD+++ A + + E R
Sbjct: 523 AMQMAGLVDIQEVPKDNTRLANRTLFFWFFDRERYQAHILDDLYKAMVRALQVLQVERHR 582
Query: 481 EKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E+ +L+ K T ++YNR + + L M+LD+ + +F D+
Sbjct: 583 ERNILSFVERKDVMGKEEEVMTAEHYNKYNRHLEEQNKLIGQVMRLDEMVSIFRDY 638
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++++ +G+L +++ L KG T + YT+L Q++N L VLIQQN + T P
Sbjct: 11 LVSDLYGELPSRILAALFTKGRSTIAQLGLYTQLGPRQIRNGLGVLIQQNLLYHHTN--P 68
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM- 131
D T Y D + VRF K L ++ ++ +LVQ LL G + ++
Sbjct: 69 D------TKRTTYDANPDACYNLVRFGKILEMIESQYGTAERDLVQTLLLLGYARIAELT 122
Query: 132 ---FDRAKSSEKEGN 143
RA +S N
Sbjct: 123 HAYVSRAPTSNGHAN 137
>gi|213402243|ref|XP_002171894.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
gi|211999941|gb|EEB05601.1| DNA-directed RNA polymerase III complex subunit Rpc82
[Schizosaccharomyces japonicus yFS275]
Length = 585
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 14/258 (5%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + VI FG+ A VC LL G +T Q ++ T+L ++++ AL+ L++
Sbjct: 1 MSQYAVELCEVVIQEFFGECCATVCHALLNHGRMTLQTLRSRTKLPLKKLRQALVSLMRH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V + + T Y + I + VR K + I+SQ Q+ + + +
Sbjct: 61 HLVLYAKV------IEHLREVTHYEAQWTEIYNFVRKGKAVYIISQRVSQEAGSIAKYIA 114
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVD--LDSLRETLVKLVTAHYVERCPASEPLLMPISEE 179
GR+ + +F K+ K+ + VD + LR + L+ +++ L+P+ ++
Sbjct: 115 TQGRVRVSDIF---KAFGKDPDAVDDETNKLRNEIYALMEKKFLDVVQPRH--LIPMFDQ 169
Query: 180 EGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPG 239
E R K ++ K + ++ A+ ++ + +VG K K +
Sbjct: 170 EMELRLKHTERLKSENMSDAKRNHEIQDAIQLDLAKLDAAEQ-SKEVGMKRKPIESFARP 228
Query: 240 EKRKHDVLELDECGVADE 257
KR+ DE D+
Sbjct: 229 SKRRRRAGAADETADGDD 246
>gi|443925339|gb|ELU44196.1| RNA polymerase III subunit RPC82 helix-turn-helix domain-containing
protein [Rhizoctonia solani AG-1 IA]
Length = 821
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 94/436 (21%), Positives = 164/436 (37%), Gaps = 70/436 (16%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +HFG + KV LL +G L + R+T L V+ A++ LIQ N V
Sbjct: 318 IVHSHFGPIAGKVAGTLLNRGRLQLPTLIRFTGLKPSLVRAAVIALIQHNLVW------- 370
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
A+ + ++ + R RF K L I ++F ++ +L+HG+L L +
Sbjct: 371 --HAEDAIEGEVVEIDWEECIARQRFGKILAITKEKFGVPGQAIISIILDHGKLRLPDIL 428
Query: 133 ------DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
D K SE ++ L L ++H PAS IS + R +
Sbjct: 429 RLLNKSDNQKESEA--------YIKVALELLTSSHLRVSTPASH-----ISPRDKLIRYE 475
Query: 187 GSKSAKKIG--EPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKH 244
+ K +G P+ Q + A + + R + K KN N G R
Sbjct: 476 AEERKKHVGIVAPKDSRQFRITAEVRIRREREEAEAPSVGLIKRKAKNKENKEGGSGRSK 535
Query: 245 DVLELDEC----GVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
V+ + GV D + ++ + + R +D AA VL +LQ
Sbjct: 536 KVIAVKWASPIFGVRDAKQMI--------------QLIVAAAREKYNDEAAAVLKGILQV 581
Query: 301 TSSAEKKVKTKNSVPLSLSSIYEEVIK-----SEAGRNMTLDHVRASLVQLGELSFVDAS 355
E K+ + + S IY +V++ S G ++ + + ++ AS
Sbjct: 582 ---CEPKMTQLDEI-RSGEHIYRDVLRLYLKGSGVGTSVIREFISILACADNPTTWGVAS 637
Query: 356 S------------DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLET 403
+ +++FE I + VE V R+G +I L R+L
Sbjct: 638 AFLSISGSGGGGGGKVAVEFEAISRRLKRGVVEGAVRDRWGDHIAKIAMLAPNDVRVL-V 696
Query: 404 DKISDTTFVEKKDAPK 419
+ ++ V ++ PK
Sbjct: 697 NTLNTANIVALQEVPK 712
>gi|212537869|ref|XP_002149090.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
gi|210068832|gb|EEA22923.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces marneffei ATCC 18224]
Length = 637
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G LT ++ ++++S +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLTLFRLRDHSQVSQKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V +T+ DGF T Y D + +R K L ++ + +++ +
Sbjct: 61 HLVYHYTSTD-DGF-------TYYEANIDGAYYLIRTGKVLEVVEERLGSYAAQVMAAIA 112
Query: 122 EHGRLTLKQM 131
HG + + ++
Sbjct: 113 YHGHIMISEL 122
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 89/181 (49%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++ +++ ++ ++ E+E +V R+G+ A R+ ++L G+L E ++ + + + +KD
Sbjct: 458 AWYVEYRRLARQLRHLEIERIVGIRFGKLALRVIQILLSMGKLDEK-RLQEVSLISQKDL 516
Query: 418 PKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ ++G++ ++++ R LW + + +++L + + A R+
Sbjct: 517 RQVLAQMQENGFVDLQEIPKDAQRLPNRTVFLWFYDPDRVGRNLLHDTYKAMSRCIQRLR 576
Query: 476 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 526
+E R K+ L+ +++Y + R+ L+ +LDD + +F D
Sbjct: 577 FERTRLKDFLDKTERTDVRGDEEKYLTEAELETLRQWREKEGLMLGEIARLDDLVAVFRD 636
Query: 527 F 527
F
Sbjct: 637 F 637
>gi|260951159|ref|XP_002619876.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
gi|238847448|gb|EEQ36912.1| hypothetical protein CLUG_01035 [Clavispora lusitaniae ATCC 42720]
Length = 595
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 24/158 (15%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G+ A + L+ G LT +++ ++L+ +QVK AL+ LIQ NC+Q +
Sbjct: 22 VALNHLGETSAIIISTLISYGRLTAKDISIKSKLTLKQVKIALVSLIQLNCIQYW----- 76
Query: 73 DGFADGPKANTQYVVLFD----NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
K N+ V + I+ + + + ++ ++ ELVQ ++E+G +T+
Sbjct: 77 -------KENSSKSVFYTFNDRGIITLLHAGDIIARIKSQYGEKAAELVQNIIENGNITV 129
Query: 129 KQMFDR-AKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
K + EK N+ LVKL ++ R
Sbjct: 130 KDFISTLSDEQEKYDNMA-------ILVKLFNDGWLHR 160
>gi|405956637|gb|EKC23109.1| DNA-directed RNA polymerase III subunit RPC3 [Crassostrea gigas]
Length = 200
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 375 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434
+ESVV +R+G RIFR+L LE +I D + K+A +LY L+ + ++ +
Sbjct: 16 IESVVQERFGSKCLRIFRVLLLKKH-LEQKQIEDFVMISAKEAKDLLYTLFSENFITTTE 74
Query: 435 LVVT--GARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLN 486
+ T A F L+ VN Q + VL+ + A N ++ E++ + LL+
Sbjct: 75 ISKTPDHAPSRTFFLFTVNIQHVASMVLNRCYKALYNAMVKKETEVNEHRRLLD 128
>gi|253745283|gb|EET01310.1| Hypothetical protein GL50581_1430 [Giardia intestinalis ATCC 50581]
Length = 487
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 22/227 (9%)
Query: 227 GEKEKNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHL 286
G K + P K+ H D V+D V Y + E I + + D+V
Sbjct: 184 GRNTKGTEPAEPPRKQPHSFCTTDPSAVSDSGEV-YCVSVERLIALFQEEELADYVSTVY 242
Query: 287 DDGAANVLSAMLQATSS---------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGR 332
D V A L +SS + V+ N+ P +L +++ ++ ++ G
Sbjct: 243 DKDMGTVFRAALFISSSFQALGFCSFSSADVR-PNTRPFNLEQLHDALMNTQYSLNATGS 301
Query: 333 NMTLDHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAY 388
N TL AS++ L + V ++D Y +D + +E Q + ++++R+G A
Sbjct: 302 NFTLSFC-ASVLNLYISESKAMVHMTNDGQYIVDVDAAVERLQMAILLRIITERHGPMAR 360
Query: 389 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 435
R+F ++S G ++E ++ + + A +L L +GYL + L
Sbjct: 361 RMFNIISSRG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITML 406
>gi|156062964|ref|XP_001597404.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980]
gi|154696934|gb|EDN96672.1| hypothetical protein SS1G_01598 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 585
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 16/147 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L+ +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLSMIALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
V + E A+T Y D VR K L I + F E++ L
Sbjct: 64 LVYHNSDE---------GADTNYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVL 114
Query: 121 LEHGRLT-LKQMFDRAKSSEKEGNLVD 146
L H +++ + +++ + GN ++
Sbjct: 115 LGHAKVSDIIAELNKSHDTRANGNGIN 141
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DFE+++E + E++S++ + +G+ +R+ R++ K G+ LE I+ V+++D+
Sbjct: 483 WTVDFERVVERLRELEIDSIIYENFGQIGHRLIRVMRKMGK-LEEKHIAKVALVKQQDSR 541
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQFL 446
L ++ G + ++++ R F
Sbjct: 542 TKLVEMQMHGMVDVQEVPRDAGRMIAFF 569
>gi|412990321|emb|CCO19639.1| DNA-directed RNA polymerase III subunit RPC3 [Bathycoccus prasinos]
Length = 392
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 375 VESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434
+ESVV +R+G A RIFRLL + R L+ +IS+ + K +ILYKL+K Y+ +++
Sbjct: 233 IESVVHQRFGLLAKRIFRLLFINRR-LDQKEISEMAMLPIKQTREILYKLFKSEYIKIQE 291
Query: 435 LVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNLS 471
+ T A W V+ + + F A LN+S
Sbjct: 292 VSRTSDHAPSRTLYFWYVDLDCIRHKICQNCFQAYLNIS 330
>gi|347832925|emb|CCD48622.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Botryotinia fuckeliana]
Length = 666
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+KHAV + + + +G+L +++ LLR+G L +KR+T+L+ Q+K L VL++QN
Sbjct: 4 SKHAVELCSLLVDDIYGELSSRIFTILLRRGRLPMNALKRHTQLTTRQLKLGLTVLVRQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
V + + ++T Y D VR K L I + F E++ L
Sbjct: 64 LV----------YHNSEGSDTHYEANIDAAYALVRSGKILEIAEERFGSVAAEIMGQLVL 113
Query: 121 LEHGRLT 127
L H +++
Sbjct: 114 LGHAKIS 120
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 488 WTVDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSR 546
Query: 419 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
L + G + ++++ R LW + + +LD + A R+
Sbjct: 547 TTLVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDV 606
Query: 477 ELDREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 527
E R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 607 EKRRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 666
>gi|307174179|gb|EFN64824.1| DNA-directed RNA polymerase III subunit RPC3 [Camponotus
floridanus]
Length = 500
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/454 (18%), Positives = 181/454 (39%), Gaps = 86/454 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ ++ +K + ++ +FG++V + LL T ++ +T L +VK L VLI+
Sbjct: 1 MKDFQSKLCMLLLEEYFGNIVQCIGNSLLHSRK-TLDVIRLHTNLPLIKVKEGLCVLIKY 59
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
F T Q D K + YV+ + I+ +R+ +++ + +++ +L
Sbjct: 60 ----GFVTYQQD-----EKGSVHYVLHCEKIIMLLRYPRYMLFAKTYCRDEGEIMLEEVL 110
Query: 122 EHGRLTLKQMFDRA-----KSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPI 176
+HG +T ++ + ++ K + + +L+ T LV + L+ I
Sbjct: 111 KHGYITASEVIIKTYKRLEETPSKCAEQLSVANLKNTFELLVKNQF---------LMHSI 161
Query: 177 SEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNV 236
S + + I +PE LP + + ++N+ N
Sbjct: 162 S---------FNTMKENIEKPE--------YNLP--HLNMTAISNI--------LQGQNA 194
Query: 237 TPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
PG+ + + ++ NF+ F + R K + + D A ++
Sbjct: 195 DPGDNK-----------------LYWKVNFDRFTQDFRDKIMVSAMTQRFDINAGELMRQ 237
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL------S 350
++ T S P+ + I EEV + +T + L Q L
Sbjct: 238 LINLMY-LRTAPWTATSNPIPYTEIKEEV------KKLTFLELEQYLDQYLRLIEEDSSQ 290
Query: 351 FV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKI 406
F+ D+ YS++ + + +ES+V++R+G A RIFRL+ + + + D+I
Sbjct: 291 FIKRVGDSGGGQYSVNMKNAFKQLVWATIESIVAERFGSKAARIFRLV-RIEKNVNLDQI 349
Query: 407 SDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 440
+ K+A + Y L ++ ++ M+++ G
Sbjct: 350 QQLAMIPAKEAKCLTYILAQENFIQMQEIKKAGT 383
>gi|407928158|gb|EKG21030.1| RNA polymerase III Rpc82 C -terminal [Macrophomina phaseolina MS6]
Length = 637
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V L + G LT + + +Y++LS +K+ L VLIQQ V +TTE
Sbjct: 12 LVDDLYGELSSRVFSILAKLGRLTIRGLVKYSDLSARDLKHGLAVLIQQGLVLHYTTED- 70
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
Y +D+ VR K + ++ F + LV LL G + +
Sbjct: 71 ---------EIYYEPHWDHAYSLVRAGKIVKMVEDRFGESAGGLVSNLLLLGHAKVSDLA 121
Query: 133 DRAKSSEKEGNLVDLDSL 150
D S K G VD SL
Sbjct: 122 DAYGVSSKTG-AVDAASL 138
>gi|126134279|ref|XP_001383664.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
gi|206558138|sp|A3LQX9.1|RPC3_PICST RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|126095813|gb|ABN65635.1| subunit of RNA polymerase III (C) [Scheffersomyces stipitis CBS
6054]
Length = 599
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
NH GD+ A + CL+ G LT ++ T++ ++VK+AL+ LIQ NC+ F
Sbjct: 26 NHLGDVAALIISCLISYGRLTATDISHRTKIPVKKVKSALVSLIQMNCI----------F 75
Query: 76 ADGPKANTQYVVLFD--NILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 133
+ Q F+ IL + ++ ++ + + E+VQ +L +G + ++ +
Sbjct: 76 YWRESGSKQVFYSFNETGILVFLHSGDIISHVTTHYGEDSAEIVQNILVNGHIRIEDYVN 135
Query: 134 RAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165
EK+ +D+ +L +L T ++ R
Sbjct: 136 NIDDEEKK---LDIQTL---FFRLFTDRWIVR 161
>gi|170575484|ref|XP_001893264.1| hypothetical protein Bm1_08965 [Brugia malayi]
gi|158600845|gb|EDP37905.1| hypothetical protein Bm1_08965 [Brugia malayi]
Length = 228
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
D++ + +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 46 DSAGGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAML 104
Query: 413 EKKDAPKILYKLWKDGYLLMEKLVVTG 439
+A K+ Y+L + G++LM+ + T
Sbjct: 105 SSTEARKLCYQLLEKGFVLMKHVAKTN 131
>gi|71017949|ref|XP_759205.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
gi|46098826|gb|EAK84059.1| hypothetical protein UM03058.1 [Ustilago maydis 521]
Length = 715
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 114/271 (42%), Gaps = 44/271 (16%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-SSAEKKVKTKNSVP 315
+ +V R +F+ F LR + ID VR ++ AA V ++QA +S K V+ S P
Sbjct: 387 DPTVWLRVHFDRFDVHLRDEVMIDAVREKYNNTAAEVFRHLIQAGDASTNKSVRDVRSAP 446
Query: 316 LSLSSIYEEVIKSEAGRNMTLDHV-----RASLVQLGE---------------------L 349
+S++++ + + S+ D RASL E L
Sbjct: 447 ISITTLCHK-LPSDLSLQKGFDRRSFGKDRASLPSKQEFLAEYSAIFSHSEDVSGRSKSL 505
Query: 350 SFVDASSDS-------------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSK 396
+ +SDS +I+F + E + + + +VV +++G A RI +L +
Sbjct: 506 RLMAPASDSTTKTAGGSKVASTLTIEFGNLAEGMRKDLLRNVVEEKFGTAAIRIMNILRE 565
Query: 397 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQI 454
G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 566 KGK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAK 624
Query: 455 LWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+LD ++ + L R + E+ ++ LL
Sbjct: 625 CRAWLLDHLYQSLARLGQRRNEEMRKQTPLL 655
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 54/172 (31%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY-------------TELSDEQVKNA---- 54
H++ HFG + A+V LL++G LT + + R+ S+ N+
Sbjct: 16 HILLQHFGPIAARVGALLLKRGRLTIREISRFLNQQPTRTNRGPIDPFSNHSATNSKSTL 75
Query: 55 -------------------------------LLVLIQQNCVQAFTTEQPDGFADGPKANT 83
++ LIQ C +T+ PD AD N
Sbjct: 76 VSAPIAGASSSSSTSDPNAPVPVPKLLIEQTVMTLIQHGCAWHSSTD-PD-VAD---PNQ 130
Query: 84 QYV-VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDR 134
++ + + +L R+RF +++ I E Q +V+ +L+HG+L + DR
Sbjct: 131 EFFEININEVLLRLRFGRYIGIAEDELGQTAARIVKLVLQHGKLQANDIIDR 182
>gi|341876865|gb|EGT32800.1| hypothetical protein CAEBREN_14755 [Caenorhabditis brenneri]
Length = 542
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 111/518 (21%), Positives = 203/518 (39%), Gaps = 79/518 (15%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V +I + FG +VAKV E +L++ L +K +++ +K AL LI
Sbjct: 5 KYETQMCVIIIEDIFGKIVAKVMETILKESCQLATLMLKLKGQMTTVLIKKALTTLINF- 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T D YV D I + + + I + + L+
Sbjct: 64 ---GFVTFNLDN-----NHRATYVADADQIQYVISAPRACLIAKTLYGPTAESICIELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R K++++ D+ + +L +H++ R P E
Sbjct: 116 QGRLTVSETIRRIKAADESAVWSDI---KNAFGELAASHFLIRVPPVE------------ 160
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
++ G P+ + A AM +++ E++ E + +N KR
Sbjct: 161 --------SEIYGCPQFV------ANFDPFAMPNAIMEKNETNSSELSTSDSN---SRKR 203
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCID------------HVRAHLDDG- 289
K D D + +R N+ F LR + ID H+ ++G
Sbjct: 204 KADSSPEDA-----DAGQYWRLNWVRFNGYLRDELIIDYLIGGESTATMTHLNVKREEGE 258
Query: 290 ---AANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIK-SEAGRNMTLDHVRASLVQ 345
+ + Q + K+ + PLSL +I V R +LD + ++
Sbjct: 259 EVPQVDRTQYITQNVAHLMFKINETRANPLSLENITASVTDLQRLVRENSLDLAKPD-IE 317
Query: 346 LGELSFVDAS-------SDS----YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
L VD S DS Y++D I ES++ +++ A R+ RLL
Sbjct: 318 LACQILVDESDGIVRKLGDSNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRVMRLL 377
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNR 452
+S L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+ V+
Sbjct: 378 -ESRHYLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSTDFQPARTFYLYYVDL 436
Query: 453 QILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 490
+ +++ NL LR +E K LL+ A+
Sbjct: 437 PRTVRGLVEYNCKLVRNLILRQRHERAENKALLDKDAN 474
>gi|402591885|gb|EJW85814.1| hypothetical protein WUBG_03275, partial [Wuchereria bancrofti]
Length = 383
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
D++ + +DFEK I + VES + ++ A R+FRLL + G LE D + +
Sbjct: 171 DSAGGLFVVDFEKAIAMHCQRHVESAIREKLDVRAVRVFRLLMQKG-FLEEDHVEKLAML 229
Query: 413 EKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAALNL 470
+A K+ Y+L + G++LM+ + T A L+ V+ I+ ++ N+
Sbjct: 230 SSTEARKLCYQLLEKGFVLMKHVAKTNDFAPARTIYLYYVDLNIVAHNLYLFTCKVLRNV 289
Query: 471 SLRVSYELDREKELLN 486
+R +E K L++
Sbjct: 290 IIRRRHETKEHKVLID 305
>gi|164656160|ref|XP_001729208.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
gi|159103098|gb|EDP41994.1| hypothetical protein MGL_3675 [Malassezia globosa CBS 7966]
Length = 572
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
S ++S+++ I+E Q + VV +R+G A RIF +L + G+ LE IS +
Sbjct: 389 STTFSVEYVNIVERIQLRMIRDVVVERFGSMAGRIFTILVEKGK-LEEKHISKVGLISMS 447
Query: 416 DAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLR 473
+ I +L+ L ++++ + R Q F LW V+ +LD+++ + LS R
Sbjct: 448 ETRDICSRLFAASILSLQEVPKSNERNPQRTFFLWFVDVLKCKSWLLDQLYKTLVQLSRR 507
Query: 474 VSYELDREKELLN 486
YE + LL
Sbjct: 508 RLYEQSQRTLLLQ 520
>gi|242808055|ref|XP_002485084.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715709|gb|EED15131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Talaromyces stipitatus ATCC 10500]
Length = 634
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FGDL ++ L++ G L+ ++ +++++ +Q+ +AL L+Q
Sbjct: 1 MSQYAAELCTLLVEDNFGDLFGRIYSTLVQYGRLSLLRLREHSKVTHKQLLHALAALVQM 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V FT+ DGF T Y D + +R K L ++ ++ +
Sbjct: 61 HLVHHFTS-IDDGF-------TYYEANVDGAYYLIRMGKILEVVEDRLGSYAARVMSAIA 112
Query: 122 EHGRLTLKQM 131
HG + + +
Sbjct: 113 YHGHIMISDL 122
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 91/185 (49%), Gaps = 12/185 (6%)
Query: 354 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
S ++ +++ ++ ++ E+E +V R+G+ A R+ R+L G+L E ++ + + +
Sbjct: 451 GSVPAWYVEYRRLARQLRHFEIERIVGIRFGKLALRVIRILLSVGKLDEK-RLQEVSLIA 509
Query: 414 KKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLS 471
+KD ++L ++ ++G++ ++++ R LW + + ++VL +++ A
Sbjct: 510 QKDLRQVLAQMQENGFVDLQEIPKDAQRIPNRTVYLWFYDPDRVGRNVLHDIYKAMSRCL 569
Query: 472 LRVSYELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAIL 522
R+ +E +R K+ L+ ++ Y + R+ L+ +LDD +
Sbjct: 570 QRLRFERNRLKDFLDKTERIDVRGNEEEYLTEAELETLRQWREKEALMLGEISRLDDLVA 629
Query: 523 LFHDF 527
+F DF
Sbjct: 630 VFRDF 634
>gi|302927138|ref|XP_003054435.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
gi|256735376|gb|EEU48722.1| hypothetical protein NECHADRAFT_75140 [Nectria haematococca mpVI
77-13-4]
Length = 662
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 25/175 (14%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 25 TKHAAELCALLVNDLYGELPSRILIALLTKGRSTISQLVQHTALTPRFLRNGLAVLIQQN 84
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--L 120
+ T PD +AN D + VR K L I+ +++ EL Q L
Sbjct: 85 LLYHHT--DPDTDVTSYQANA------DACYNLVRSGKILDIIERQYGTAERELAQTLML 136
Query: 121 LEHGRLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 164
L H R+ L F RA + + N L++ +S L LV+L+ A VE
Sbjct: 137 LGHARIADLSHAFGSRAPKTNGQTNGDHESHDGLIESESHLNSVLVRLIRAEIVE 191
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/180 (17%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 484 WTVDFTRLMTHLRETELDAIIEQSHGRHGLRLTRILREKGKLDE-KMLPSAALMKKTDVQ 542
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 543 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCMQTLQV 602
Query: 477 ELDREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E ++ +L+ + T ++YN+ +V+ L M+LD+ + + D+
Sbjct: 603 ERHNQRNILSFVEREDVQGKEEEVMTTEHYNKYNKHLEVQSKLLGQVMRLDELVSVLRDY 662
>gi|71028552|ref|XP_763919.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350873|gb|EAN31636.1| hypothetical protein TP04_0284 [Theileria parva]
Length = 429
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69
++VI +FG L ++V LL +GP++ + T+ + + V+NAL++LI+ V+ +
Sbjct: 9 VLYVIEYYFGRLTSRVTSQLLLRGPISLYKLVNPTKFNFKVVRNALVILIRHGIVE-YNL 67
Query: 70 EQPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLT 127
E + GP+ T Y V +N L L Q+ D C +++ + ++G +
Sbjct: 68 ETS---SSGPRLVTHVLYSVNINNALSLFIVPLILLNCKQQLDDNCYDVLLHISKYGITS 124
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
K++ +S + G+ V + L KL+ +H++ + + L+ ++++GP
Sbjct: 125 QKKI---KESFPELGDYV----ISNCLSKLINSHFIVAVESFDHLM---NKQQGP 169
>gi|322696531|gb|EFY88322.1| RNA polymerase III subunit RPC82 [Metarhizium acridum CQMa 102]
Length = 653
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + FG+L +++ L KG T + ++ L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLFGELPSRILVALFTKGRCTLAQLVQHVSLGPRHLRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ +T PD T Y D + VR K L +++ ++ +LVQ L++
Sbjct: 64 LLYHYT--DPD------TGGTNYEANSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQ 115
Query: 123 HG 124
G
Sbjct: 116 LG 117
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 326 IKSEAG---RNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVE 376
+K E G ++ LD +R L+ L E FV +++DFE +++ + E++
Sbjct: 433 VKFEDGAMAKDSRLDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVDFELLMDRLRESELD 492
Query: 377 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436
+ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 493 AYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGKMLAMQMAGLVDVQEVP 551
Query: 437 VTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK--- 491
+R + W + + + +LD+++ L + E +E+ +L K
Sbjct: 552 KDNSRLANRTLFFWFFDGERVQSQLLDDIYKGMLRCLQTLDVERHKERNILTFVERKDVK 611
Query: 492 ------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
T ++YNR + + L M+LDD + +F D+
Sbjct: 612 GKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 653
>gi|361126875|gb|EHK98861.1| putative DNA-directed RNA polymerase III subunit RPC-3 [Glarea
lozoyensis 74030]
Length = 616
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L +++ LLR+G L + R+T L+ +Q+++ L+VL+QQN + T D
Sbjct: 19 YGELASRIFTILLRRGRLPIPTLARHTRLTPKQLRHGLVVLVQQNLIYHHT--------D 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
T Y ++ +R K ++ + E+V LL G + + D ++
Sbjct: 71 SVTGVTHYEANYNAAYALLRSGKIMSFVETRHGVLAREIVHNLLLLGHTKISDLLDAYEA 130
Query: 138 SEKE 141
+KE
Sbjct: 131 QKKE 134
>gi|67592886|ref|XP_665677.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656471|gb|EAL35447.1| hypothetical protein Chro.40024 [Cryptosporidium hominis]
Length = 618
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 16/133 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + LL GPL +++ K + S + +N+++ L
Sbjct: 11 IISTHFGGLPAMIIKKLLVNGPLPMDRLYHLVIKDKESSKYLSSNSKDNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
+ C+ + P+ D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 117 VQGLLEHGRLTLK 129
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|388853668|emb|CCF52636.1| uncharacterized protein [Ustilago hordei]
Length = 709
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 62/199 (31%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQ--------------------- 50
HV+ HFG + A+V LL++G L + ++R+ + +
Sbjct: 16 HVLLQHFGPIAARVGALLLKRGRLNIREIQRFLNQAPTRTNRGPTDPFSNASTTHSKPTL 75
Query: 51 ---------------------------VKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
V+ ++ LIQ C +T+ P+ AD N
Sbjct: 76 VSAPIAGASSSHNTGDPNAPVPVPKLLVEQTVMTLIQHGCAWHSSTD-PE-LAD---PNE 130
Query: 84 QYV-VLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEG 142
++ + + +L R+RF K++ I QE +V+ +L+HG+L + DR S
Sbjct: 131 EFFEINVNQVLLRLRFGKYIGIAEQELGDTAARIVKLVLQHGKLQASDIIDRTAS----- 185
Query: 143 NLVDLDSLRETLVKLVTAH 161
D+D+ R+ + AH
Sbjct: 186 ---DMDTQRKASLAAAQAH 201
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
+ S +I+F + E + + + +V+ +++G A RI +L + G+ LE IS V
Sbjct: 518 ASSLTIEFSNVAERMRRDLLRNVIEEKFGTAAIRIMNILREKGK-LEEKHISKLALVSIS 576
Query: 416 DAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLR 473
+ + +L+ L ++++ T R F LW V+ +LD ++ + L R
Sbjct: 577 ETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKCRAWLLDHLYQSLARLGQR 636
Query: 474 VSYELDREKELL 485
+ E+ R+ LL
Sbjct: 637 RNEEMRRQLTLL 648
>gi|19115041|ref|NP_594129.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74623716|sp|Q9C106.1|RPC3_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3; AltName: Full=RNA
polymerase III subunit C82
gi|13624758|emb|CAC36920.1| DNA-directed RNA polymerase III complex subunit Rpc82 (predicted)
[Schizosaccharomyces pombe]
gi|76782165|gb|ABA54853.1| RNA polymerase III subunit Rpc82 [Schizosaccharomyces pombe]
Length = 591
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/321 (19%), Positives = 136/321 (42%), Gaps = 28/321 (8%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ FGD + V LLR G LT +++ T L +++ AL+ L+Q
Sbjct: 1 MSQYAVELCEILVEEFFGDCCSAVASALLRHGRLTIPMLQKRTSLPGPKIRQALVSLMQH 60
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ V T + + T Y + I + +R K + ++SQ+ +Q+ +V+ L
Sbjct: 61 HMVLYVTV------IENVREVTYYETQWKEIYNILRKGKDVYLISQKLNQEAASVVKYLS 114
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEG 181
GR + ++F+ A + +G+ + +++ L +L+ ++ L+P+ ++E
Sbjct: 115 TQGRARVLEVFN-AFDKKVDGSDEESRMMQKNLTELIYQKFL--LVVQPRHLIPVGDQEM 171
Query: 182 PARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEK 241
R K K E + + V+ ++ +E + E ++ + P ++
Sbjct: 172 QLRIKHLDRRKSENVSEIKKNREVDDSVALEMLELRAADMSELQGLTRKPKESIPHPTKR 231
Query: 242 RKHDV-----LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSA 296
RK V + D + D+ + + + +R ++ G +VLS
Sbjct: 232 RKRAVGSAPSVSTDLNNILDDDNSILVPDLSAHVR--------------INSGKLSVLSK 277
Query: 297 MLQATSSAEKKVKTKNSVPLS 317
+ T E+++ S+ S
Sbjct: 278 NARLTHWVERRIGKSTSLVYS 298
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 105/222 (47%), Gaps = 20/222 (9%)
Query: 322 YEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSD----SYSIDFEKIIEIAQNEEVES 377
YEE + A R + L+ L F+ + ++++F + ++ + E E+
Sbjct: 371 YEESVDENANRKSKVLAQHLELLADCSLKFISKIGNRGMGEWAVNFTHLTDMLRAIEYEN 430
Query: 378 VVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVV 437
+ +++G A R+ R++ G++ E ++++ + ++D +L + + G L ++++
Sbjct: 431 FIEQKFGERAIRLLRIIKDKGKI-EEKQLANIALLRQRDLRTVLQAMAEIGALELQEVPR 489
Query: 438 TGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV------SYELDREKELLNLPA 489
+ R F LW + +LDE++H L +R+ +L + E +++
Sbjct: 490 SSDRAPSKTFFLWFHRPDRAYSLLLDELYHVIARLYMRLRDARAQRAQLIEKAERIDIKG 549
Query: 490 DKRTGPLQDRYNRIRKV-----RILLESSQMKLDDAILLFHD 526
++ + ++K+ ++LL++S +LDD +L+F D
Sbjct: 550 NEEQYLQKFEQAELKKLYSYEEKLLLQAS--RLDDMVLVFRD 589
>gi|158291041|ref|XP_312561.3| AGAP002394-PA [Anopheles gambiae str. PEST]
gi|157018184|gb|EAA08103.3| AGAP002394-PA [Anopheles gambiae str. PEST]
Length = 506
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 14/162 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I HFG++V V + L + R T L+ +V +L +LI+ N V
Sbjct: 12 IIEQHFGEVVRTVVDDLFASIAKPLSQIIRSTGLTKSEVCKSLAILIKFNMV-------- 63
Query: 73 DGFA-DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131
GF+ + + +Y + +D I+ +R+ +++ ++ +F + L++ LL G +
Sbjct: 64 -GFSLNKARTGYEYRLHYDRIVMVLRYPRYVHLIQTKFGHESAVLMEELLRSGTQCASYI 122
Query: 132 FDRAKSS--EKEGNLVDLDSLRETLVKLVTAHYVERCPASEP 171
++ S+ K+ N + L LR+ L +Y+ R P +P
Sbjct: 123 IVKSMSNVDGKDNNTLAL--LRDKFADLAQENYITRAPEPKP 162
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 104/239 (43%), Gaps = 10/239 (4%)
Query: 254 VADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNS 313
V DE V + N E F R+ + + +D A + +LQ + ++
Sbjct: 201 VPDE-DVHWVVNVEQFHIDFRNTIMVTAIERLIDSNAGECMKYLLQLMRERTNPWEAVSN 259
Query: 314 VPLSLSSIYEEVIKSEAGRNMT--LDHVRASLVQLGELSFVDA-SSDSYSIDFEKIIEIA 370
P++L + + + M LD + + LS D ++++ ++I E
Sbjct: 260 -PIALVDLRQRCERKSQNVEMLRYLDQYISVMESNDYLSKFDTKGGGQFTVNVKRIFEQL 318
Query: 371 QNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYL 430
+E+++ ++YG A RIFR++ + + +E + I V KDA + YKL ++ +L
Sbjct: 319 TWACIENIIVEKYGSKAARIFRVV-RMKKYVEQEDIQKEAMVPAKDAKLLTYKLLEENFL 377
Query: 431 LMEKLVVTGARQS----QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
++ G S F L+ VN+ + +L+ + A N R++++ K L+
Sbjct: 378 QIQTFRKPGGGNSGAPKSFFLFYVNQPQIVSMLLELSYKALYNSITRLTHDKTVNKRLI 436
>gi|327300751|ref|XP_003235068.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
gi|326462420|gb|EGD87873.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton rubrum
CBS 118892]
Length = 651
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 466 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 524
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 525 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 584
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 585 CLQRLAYERSKLKPLI 600
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS QVK+ L VLI
Sbjct: 1 MSQYVAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQVKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|440631806|gb|ELR01725.1| hypothetical protein GMDG_00101 [Geomyces destructans 20631-21]
Length = 639
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 8/126 (6%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L +++ L R+G T +K++T L+ QV++ L+VLIQQN + TEQ G
Sbjct: 19 YGELTSRIFAILQRRGRQTINTIKQHTGLTGRQVRHGLVVLIQQNLL-FHNTEQESG--- 74
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+T Y D+ +R + L + + + ++VQ LL G + + + +S
Sbjct: 75 ----STFYEANEDSAYFLLRSGRILETVEERYGVDARDVVQNLLLLGHTKVADLAEAYES 130
Query: 138 SEKEGN 143
K N
Sbjct: 131 KNKTTN 136
>gi|326479889|gb|EGE03899.1| DNA-directed RNA polymerase III subunit RPC3 [Trichophyton equinum
CBS 127.97]
Length = 649
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 464 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISL 522
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 523 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 582
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 583 CLQRLAYERSKLKPLI 598
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|326468627|gb|EGD92636.1| DNA-directed RNA polymerase III subunit Rpc3 [Trichophyton
tonsurans CBS 112818]
Length = 613
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 428 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDE-KRLQEISL 486
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 487 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 546
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 547 CLQRLAYERSKLKPLI 562
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L+ G PL R + T LS Q+K+ L VLI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVHHGRQPLMR--IVHNTHLSPRQIKHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSTILSLGHVKISHL 122
>gi|302658985|ref|XP_003021188.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
gi|291185075|gb|EFE40570.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Trichophyton verrucosum HKI 0517]
Length = 683
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 498 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 556
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 557 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 616
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 617 CLQRLAYERSKLKALI 632
>gi|302505627|ref|XP_003014520.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
gi|291178341|gb|EFE34131.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Arthroderma benhamiae CBS 112371]
Length = 684
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 499 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGSVAVRVLRVLADKGRLDEK-RLQEISL 557
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 558 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLIEDTYKSMAR 617
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 618 CLQRLAYERSKLKALI 633
>gi|399218957|emb|CCF75844.1| unnamed protein product [Babesia microti strain RI]
Length = 978
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
VI + +VA V + L+ P T ++ RYT++ + KNAL++L+ + V+ T P
Sbjct: 513 VIARQYNSVVASVAKYLMLNSPSTLYSISRYTKIELNETKNALILLVLHDIVRPDTRVHP 572
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ 130
D Y VL +NIL+R+ LT++ + + +L+ ++G L L++
Sbjct: 573 D-----TGTQVYYTVLLENILNRLLLPVVLTVVGHVYSKIHSQLLLQFAKYGYLCLEK 625
>gi|358378220|gb|EHK15902.1| hypothetical protein TRIVIDRAFT_80209 [Trichoderma virens Gv29-8]
Length = 640
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 99/223 (44%), Gaps = 21/223 (9%)
Query: 322 YEEVIKSEAGRNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEV 375
+EE S R LD +R L+ L E FV +++DF++++E + E+
Sbjct: 422 FEEAATSTDNR---LDQMRQHLLLLAESKHRFVRHCGAQGRGQWTVDFDQVMERLRETEL 478
Query: 376 ESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 435
++ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 479 DASIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKTDVQAKMLAMQMAGLVDVQEV 537
Query: 436 VVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK-- 491
R + W +R+ +LD+++ A + + E RE+ +L+ K
Sbjct: 538 PKDNTRVANRTLFFWFFDRERSQAQILDDLYKAMVRALQTLQVERHRERNILSFVERKDV 597
Query: 492 -------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
T ++YNR + + L M+LD+ + F ++
Sbjct: 598 MGKEEEVMTAEHYNKYNRHLEEQNKLLGQVMRLDEMVSTFREY 640
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ L KG T + YT+L Q++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILAALFTKGRSTITQLGLYTQLGPRQIRNGLGVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ T D T Y + VR K L ++ ++ +LVQ LL
Sbjct: 64 LLYHHT--------DADTKRTTYEANPGACYNLVRSGKILEMIESQYGTAERDLVQTLL 114
>gi|296809077|ref|XP_002844877.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
gi|238844360|gb|EEQ34022.1| RNA polymerase III subunit Rpc82 [Arthroderma otae CBS 113480]
Length = 638
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F ++ ++ E+E +V RYG A R+ R+L+ GRL E ++ + + + KD
Sbjct: 459 TWAVEFRHLVRQLRHLEIERLVEARYGTVAVRVLRVLADKGRLDEK-RLQEISLMPSKDL 517
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+IL +L G++ ++++ RQ LW + + ++++ + R++
Sbjct: 518 RQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDAYKCMARCLQRLA 577
Query: 476 YELDREKELL 485
YE + K L+
Sbjct: 578 YERGKLKALI 587
>gi|84996465|ref|XP_952954.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303951|emb|CAI76330.1| hypothetical protein, conserved [Theileria annulata]
Length = 465
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 89/442 (20%), Positives = 177/442 (40%), Gaps = 83/442 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
L EY ++VI +FG L ++V LL +GP++ + + + + +NAL++LI+
Sbjct: 3 LIEYDL--VLYVIEYYFGRLTSRVTSQLLLRGPISLPKLVNPKKFNFKVFRNALVILIRH 60
Query: 62 NCVQ-AFTTEQPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
V+ +F T GP+ T Y V +N L L ++ D C +++
Sbjct: 61 GIVEYSFETT-----TIGPRLVTHLLYSVNINNALSMFLIPSILLNCKEQLDDDCYKVLL 115
Query: 119 GLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
+ ++G T +++ +S + GN V + L L+ +H++ + + L+
Sbjct: 116 HISKYGITTPRKI---KESLPELGNYV----ISNCLFNLINSHFIVPVDSFDQLM----- 163
Query: 179 EEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTP 238
++KG + P + + F V+ + + + N +
Sbjct: 164 ----NKQKGHE-------------------YPCDGI-FDVLETL-------TRGTTNSSA 192
Query: 239 GEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAA--NVLSA 296
G +C + D Q +Y+ +FE + L + + + + + A+ VL
Sbjct: 193 GP----------QCNIKDNQ--LYKIDFEFALENLVKEEIKQLIYSRVGNNASIKIVLDV 240
Query: 297 MLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE----LSFV 352
++ + K+ L I + + +N+T D++ L L + L
Sbjct: 241 LMDNNTRKWPKI-------LHYRDIESRIRSLKNTQNITSDYLMKLLNGLNKHPDNLVVY 293
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKS-----GRLLETDKIS 407
SY +D+ K + + + V + G A RI+ LL K L+T ++S
Sbjct: 294 SPQDQSYYLDWYKARRMLKEMAIFESVKRLLGIRAARIWNLLLKELDNDVSSKLDTHQVS 353
Query: 408 DTTFVEKKDAPKILYKLWKDGY 429
+ V + A ILY+L G+
Sbjct: 354 ENALVSLQTARSILYRLTMKGF 375
>gi|156848460|ref|XP_001647112.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
gi|156117795|gb|EDO19254.1| hypothetical protein Kpol_1050p114 [Vanderwaltozyma polyspora DSM
70294]
Length = 638
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 21/171 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT----RQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68
+ +H G+ A + L+ KG L +NV+ E+ + +K L+ LIQ C++ +T
Sbjct: 45 IAKSHLGERAAIIIGVLIAKGRLNINELNENVR---EMDRKSIKTTLVCLIQLRCIKYYT 101
Query: 69 TEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLT 127
G K+ T Y D IL + L ++ F +++Q +L G +T
Sbjct: 102 ETTYSG-----KSITHYYFNEDGILLWLYSGLILEEINSRFQSSIAAQIIQNILSIGSIT 156
Query: 128 LKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
+ Q KS+E++ D + VKL Y+ P E L PI +
Sbjct: 157 VNQYVSNIKSNEEK------DEVYSAFVKLCENGYI--VPIKEIHLSPIGD 199
>gi|346321439|gb|EGX91038.1| RNA polymerase III Rpc82, C -terminal [Cordyceps militaris CM01]
Length = 642
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 82/180 (45%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF K++ + E+++ + + +GR R+ R+L + G+L E + ++K D
Sbjct: 464 WTVDFSKVLNRLKETELDAYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKSDVQ 522
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +R+ VLD+++ A + +
Sbjct: 523 LKMIAMQMAGLVDVQEVPKDNSRMANRTLFFWFFDRERTESQVLDDIYKAMVRCLETLQV 582
Query: 477 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E +E+ +L+ K T D+YN V L M+LD+ + +F D+
Sbjct: 583 ERHKERNILSFVERKDVQGKEEEVMTTEHYDKYNDHLAVEEKLLGQVMRLDEMVAVFRDY 642
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + +G+L +++ LL KG T + ++T L ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLYGELPSRILATLLTKGRSTIAQLAQHTSLPPRFLRNGLSVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T PD +AN D R K L + +F +LVQ LL+
Sbjct: 64 LLYHHT--DPDSRGTSYEANP------DACYTLTRSGKILEAIESQFGTAERDLVQTLLQ 115
Query: 123 HG 124
G
Sbjct: 116 LG 117
>gi|315048453|ref|XP_003173601.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
gi|311341568|gb|EFR00771.1| DNA-directed RNA polymerase III subunit RPC3 [Arthroderma gypseum
CBS 118893]
Length = 651
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
+D+ +++++F + ++ E+E +V RYG A R+ R+L+ GRL E ++ + +
Sbjct: 466 MDSGIITWAVEFRHLARKLRHLEIERLVESRYGTVAVRVLRVLADKGRLDEK-RLQEISL 524
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ KD +IL +L G++ ++++ RQ LW + + ++++ + +
Sbjct: 525 MPSKDLRQILARLQSGGFIDLQEVPRDAQRQPSRTIYLWFYDADRVVMMLVEDTYKSMAR 584
Query: 470 LSLRVSYELDREKELL 485
R++YE + K L+
Sbjct: 585 CLQRLAYERGKLKTLI 600
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +I ++FG+L + + L++ G PL R + T LS QVK+ L +LI
Sbjct: 1 MSQYAAELCTLLIADNFGELYSLIFSYLVQHGRQPLMR--IVHNTNLSPRQVKHGLAILI 58
Query: 60 QQNCVQAFTTEQPDGFADGP---KANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
QQ + +T GF DG +AN + L VR L + + ++
Sbjct: 59 QQQLIFHYT-----GFEDGVSYYQANWRAAYLL------VRSGSILQLTRERLGDYAAKV 107
Query: 117 VQGLLEHGRLTLKQM 131
V +L G + + +
Sbjct: 108 VSAILSLGHVKISHL 122
>gi|403224119|dbj|BAM42249.1| uncharacterized protein TOT_040000619 [Theileria orientalis strain
Shintoku]
Length = 471
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ-AFT 68
+H++ +FG+ AK+ LL +GP+T + Y+E + V+N L++LI V+ A
Sbjct: 9 VIHILEYYFGEAAAKIASHLLLRGPVTLHKLVSYSEYDFKIVRNTLVILIHHGVVEYAMD 68
Query: 69 TEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
Q F + + Y + +N+L + L ++ D+ +++ + ++G ++
Sbjct: 69 ASQ---FGNKSVTHVLYSIKSENVLSILLIPFLLHTAKEKVDENTFKILFHIAKYGIVSP 125
Query: 129 KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPAS 169
++ + + E ++ E++ KL+ Y+ RC S
Sbjct: 126 GKIRESFEDMETH-------TIFESISKLINEGYI-RCVDS 158
>gi|342883381|gb|EGU83894.1| hypothetical protein FOXB_05608 [Fusarium oxysporum Fo5176]
Length = 633
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 25/175 (14%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N + VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLAQHTSLTPRYLRNGIAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + VR K L ++ ++ EL Q L++
Sbjct: 64 LLYHHTDANTD--------ITYYQADADACYNLVRSGKILNVIENQYGIAERELAQTLMQ 115
Query: 123 --HGRLT-LKQMF-DRAKSSEKEGN--------LVDLDS-LRETLVKLVTAHYVE 164
H R+ L Q F RA N L++ +S L LV+L+ A VE
Sbjct: 116 LGHARIADLSQAFGSRAPKLNGHTNGEHKTHDGLIESESHLNSVLVRLIRAEIVE 170
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF +++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 455 WTVDFSRLVGKLREIELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 513
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 514 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERTQTQALDDIYKAMLRCLQTLEV 573
Query: 477 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E +E+ +L+ K T ++YNR V+ L M+LD+ + + D+
Sbjct: 574 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNRHLGVQDKLLGQVMRLDELVSVLRDY 633
>gi|310798055|gb|EFQ32948.1| RNA polymerase III subunit RPC82 [Glomerella graminicola M1.001]
Length = 662
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 103/233 (44%), Gaps = 21/233 (9%)
Query: 315 PLSLSSIYEEVIKSEAG---RNMTLDHVRASLVQLGE--LSFV----DASSDSYSIDFEK 365
P ++S E +K E G +D VR L+ L E F+ +++DF+
Sbjct: 431 PRAVSGSREAKVKFEDGPAPGTSRMDQVRQHLLLLSESRQGFLRHCGGQGRGQWTVDFKP 490
Query: 366 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLW 425
+IE + EV++V+ + +GR R+ R+L + G+L E + ++K + + +
Sbjct: 491 LIEGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGKMLAMQ 549
Query: 426 KDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
G++ ++++ +R + W + + + ++D+ + L + RE+
Sbjct: 550 MAGFVDVQEVPRDASRTATRTMFFWFFDIERIEAQLVDDFYKTMLRCLQNLEVHRYRERN 609
Query: 484 LLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
+L+ + T ++Y+R ++ L M+LDD + +F D+
Sbjct: 610 ILSFVERNDVKGKEEEVMTAEHYNKYSRYLDLQSKLLGHVMRLDDLVAVFRDY 662
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L +G T + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILGVLFSRGRSTIAQLVQTTALTPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
QN V AD Y D + +R K + ++ E+ E+VQ +
Sbjct: 62 QNLVYH--------QADSKNTIATYEANPDGCYNLIRAGKIVEMVGTEYGSPEQEVVQTI 113
Query: 121 LE--HGRLT-LKQMFD 133
++ H R++ L Q F+
Sbjct: 114 MQLGHARVSDLLQAFE 129
>gi|224002599|ref|XP_002290971.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972747|gb|EED91078.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 579
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 90/179 (50%), Gaps = 13/179 (7%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+ I ++++ ++ + V++ +G A RI +L G + E+D I++ + K+A
Sbjct: 404 FEISTRQLLQRMRDRILHRVLTTHHGLAAARIVSILQVKGHM-ESDSIAEDAMMPAKEAR 462
Query: 419 KILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+IL++L +D ++ + + +T S LW V L V++ ++ A L+L LR +
Sbjct: 463 EILHRLHRDKFINLFDMHMTKQHNSGTAIYLWNVIPSRLMNTVVNNVYTAILHLRLRRQH 522
Query: 477 ELDREKELLNLPADKRTGPLQD--------RYNRIRKVRILLESSQMKLDDAILLFHDF 527
E++ K+ ++ K G ++ +Y+ K L+ + ++LD+ +++ DF
Sbjct: 523 EVEVGKDWMDRA--KEAGATEENVHEDDKRKYHAFCKGLDRLDFACLQLDETLMVLKDF 579
>gi|358396963|gb|EHK46338.1| hypothetical protein TRIATDRAFT_195782, partial [Trichoderma
atroviride IMI 206040]
Length = 614
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 336 LDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 389
LD +R L+ L E FV +++DF++++ ++ E+++ + + +GR R
Sbjct: 407 LDQMRQHLLLLSESKHRFVRHCGTQGRGQWTVDFDQVMGRLRDTELDASIEQSFGRHGLR 466
Query: 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 447
+ R+L + G+L E + + ++K D + + G + ++++ R +
Sbjct: 467 LTRILREKGKLDEK-MLPSASLMKKTDVQAKMLAMQMAGLVDVQEVPKDNTRVANRTLFF 525
Query: 448 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK---------RTGPLQD 498
W +R +LD+++ A + + E RE+ +L+ K T +
Sbjct: 526 WFFDRDRSQAQILDDLYKAMVRCLQTLQVERHRERNILSFVERKDVMGKEEEVMTAEHYN 585
Query: 499 RYNRIRKVRILLESSQMKLDDAILLFHDF 527
+YN+ + + L M+LD+ + +F D+
Sbjct: 586 KYNKHLEEQNKLLGQMMRLDEVVSIFRDY 614
>gi|401424695|ref|XP_003876833.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493076|emb|CBZ28361.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 604
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 387 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQETVCERVVYSRYGVLGVRIMKLL 440
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 441 LQH-HFLEERTLAEQSVATYVKVREVLHQMFKDGFLLQQEVPRTSALVERPAKASVYLWG 499
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++E RE +
Sbjct: 500 LS----WSATLLPVVRERLAKTLTIAWEKLREAQ 529
>gi|308499707|ref|XP_003112039.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
gi|308268520|gb|EFP12473.1| hypothetical protein CRE_29652 [Caenorhabditis remanei]
Length = 543
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 103/522 (19%), Positives = 208/522 (39%), Gaps = 90/522 (17%)
Query: 4 EYGTKHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQN 62
+Y T+ V ++ + FG +V+KV E LL + L K ++ +K +L LI
Sbjct: 5 KYETQMCVIIVEDIFGKIVSKVLETLLNESCQLATLVYKLKGQIKTVLIKKSLSTLINF- 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
F T F+ T YV ++I + + + I + + L+
Sbjct: 64 ---GFVT-----FSLDTNNRTTYVADSEHIQYMISAPRACLIAKTLYGPSAESICIELIS 115
Query: 123 HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGP 182
GRLT+ + R K++++ + +++ + +LV ++++ R PA E SE G
Sbjct: 116 QGRLTISETIRRIKATDETA---EFSNIKHSFEELVKSNFLIRVPAVE------SEIHGC 166
Query: 183 ARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKR 242
Q + + P A+ +++ E V E +++ + KR
Sbjct: 167 P-------------------QFITSFDPF-ALPTAIMEKKEEKVDE---STDTASTSRKR 203
Query: 243 KHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATS 302
K D D + ++ N+ F LR + ID++ + G+ ++ M
Sbjct: 204 KADSTPSDA-----DAGQYWKINWSRFNGYLRDELIIDYL---IGGGSTATMTHMNHKKG 255
Query: 303 SAEKKVKTK-------------NSV---PLSLSSIYEEVI----------------KSEA 330
E +T+ N V PLS+ SI + E
Sbjct: 256 EEEDGDRTQYITQNVAHLMFKMNEVRAKPLSMDSITVSITDLQRLVRENELNLSKPDIEF 315
Query: 331 GRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 390
+ +D + ++GE ++ Y++D I ES++ +++ A R+
Sbjct: 316 ACQILVDESDGIVRKVGE-----SNGGLYTVDIRHAIRQICRHHCESLIREQFEGRAIRV 370
Query: 391 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLW 448
RLL ++ L+ +++ + + K+A ++LY L ++GY+ + + + Q F L+
Sbjct: 371 MRLL-ENRHFLDEEQVEKLSMMSGKEAREMLYALVEEGYVFNKPVGRSNDFQPARTFYLY 429
Query: 449 KVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPAD 490
V+ + +++ NL +R +E K+LL+ A+
Sbjct: 430 YVDLPRTVRGLVEYTCKLVRNLVIRQRHERTENKQLLDKDAN 471
>gi|389601866|ref|XP_001566025.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505218|emb|CAM45549.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 602
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + SD Y++D +++ Q E VV RYG RI RLL
Sbjct: 385 TMPSTRALLVK------PQSESDLYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLL 438
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + A ++L++++KDG+LL +++ T A ++ LW
Sbjct: 439 LQH-HFLEERTLAEQSVATYVKAREVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWG 497
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L L +L +++ RE +
Sbjct: 498 LS----WSATLLPAVRERLAKTLTIAWVKLREAQ 527
>gi|396478432|ref|XP_003840531.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
gi|312217103|emb|CBX97052.1| similar to DNA directed RNA polymerase III subunit Rpc82
[Leptosphaeria maculans JN3]
Length = 663
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTE 70
H++ + +G+L A+V L R G T + R + L+ Q+K L++L+QQ+ V
Sbjct: 16 THLVEDVYGELAARVYSILARHGRQTLAAIARASYLTGRQIKYGLVILLQQHLV------ 69
Query: 71 QPDGFADGPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
F G T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 70 ----FHSGDHTPVTYYEIDWQNSYSIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 354 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
A + I+F +I + EVE+ + R G+ ++ R L K GRL E +T +
Sbjct: 473 AGFSQWHIEFNEIAKQLIQTEVENTIYARKGKLGVKLIRALRKKGRLDER-ATCNTMMMS 531
Query: 414 KKDAPKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 470
D I+ L G++ + K+ A+ S L+W +RQ + +L + + + +
Sbjct: 532 ATDIRGIINDLTVQGFVQTQEIPKVERREAKHSLHLVW-YDRQRAREKLLHDTYKGMVRI 590
Query: 471 SLRVSYELDREKELL 485
R+++E D+ + LL
Sbjct: 591 LQRIAFERDKVQPLL 605
>gi|225713960|gb|ACO12826.1| DNA-directed RNA polymerase III subunit RPC3 [Lepeophtheirus
salmonis]
Length = 497
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
D+ Y ++F+ + E + ++VV +++G A RIFR++ +S + +E +++ +
Sbjct: 285 DSGGGEYHMNFKSLFEQLVHATFDNVVLEKFGSKALRIFRVI-RSHKRIEESALANLVMI 343
Query: 413 EKKDAPKILYKLWKDGYLLMEKL---VVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 469
K+ + YKL ++ ++ +++L V + A F L+ ++ + + V + F A N
Sbjct: 344 PAKETKLLTYKLLENNFIQLQELRKSVASNAVAKGFYLFYIDTDSVARMVRELCFKAIGN 403
Query: 470 LSLRVSYELDREKELLN 486
R +E + LL+
Sbjct: 404 CIFRKDHEFSIHQRLLD 420
>gi|402076616|gb|EJT72039.1| hypothetical protein GGTG_11287 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 577
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 26/187 (13%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF +I Q E+++V+ ++ GR + R+ R+L K G+ E + + K
Sbjct: 399 WTVDFRPLIRKIQESELDTVIERKIGRHSLRLIRILRKRGKADEK-SLPMQAMMAKGTVH 457
Query: 419 KILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNL------ 470
KI+ ++ G++ ++++ R +S LW + +LD + L
Sbjct: 458 KIMLEMQMHGFVDVQEVPKDNTRNAKSTIFLWFCVTDLSLTQLLDNTYKTMLRCLQVRDV 517
Query: 471 -------SLRVSYELD---REKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKLDDA 520
LR D REKE L DRY+R R + + M+LDD
Sbjct: 518 HRQNAREVLRFVGRADVKGREKEALE-------KKYFDRYDRYRSIEDKMLGHVMRLDDL 570
Query: 521 ILLFHDF 527
+ + +D+
Sbjct: 571 VGVLNDY 577
>gi|302418969|ref|XP_003007315.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
gi|261352966|gb|EEY15394.1| RNA polymerase III subunit Rpc82 [Verticillium albo-atrum VaMs.102]
Length = 665
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 11/135 (8%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
QN + A + T Y D + +R K + ++ E+ E+ Q +
Sbjct: 64 QNLLYY--------HAIAGSSVTSYEANPDACYNLIRSGKIIDMVGTEYGLAEQEVFQTI 115
Query: 121 LE--HGRLT-LKQMF 132
++ H R++ L Q F
Sbjct: 116 MQLGHARVSDLVQAF 130
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 336 LDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 389
LD +R L+ L E FV +++DF+ ++E + EV++V+ + +GR R
Sbjct: 458 LDEMRQHLLLLAESPQGFVRHCGTQGRGQFTVDFKPLMESLRQVEVDAVIEQTFGRHGLR 517
Query: 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 447
+ R+L G+L E + ++K D + L G++ ++++ +R +
Sbjct: 518 LTRILRAKGKLDEK-TLPGLALMKKSDVQGKMLALQMAGFVDVQEVPRDNSRTANRTMFF 576
Query: 448 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR----------TGPLQ 497
W + + ++D+++ L + + RE+ +L+ D++ T
Sbjct: 577 WFFDATRVDNQLMDDVYKTMLRCLQTLDVQRHRERNILSF-VDRKDVKGKEEEVMTAEHY 635
Query: 498 DRYNRIRKVRILLESSQMKLDDAILLFHDF 527
++Y++ ++ L M+LD+ I +F D+
Sbjct: 636 NKYSQFLDLQSKLLGQVMRLDELISVFKDY 665
>gi|326436836|gb|EGD82406.1| hypothetical protein PTSG_03049 [Salpingoeca sp. ATCC 50818]
Length = 327
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+ E + A+ ++ FG LVAKV + L K T Q + R TELS EQV+ +LLVL Q
Sbjct: 1 MMEVARECALAILEEDFGPLVAKVAKVLF-KCSCTMQTLVRLTELSPEQVRKSLLVLRQH 59
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ + TE F NTQ +L R RF I+++++ +++ +L
Sbjct: 60 HLLS--YTETRRIFY---TINTQTALL------RNRFPAMCHIVNEQYGDMEQLVLETVL 108
Query: 122 EHGRLTLKQMFDRAKSSEKEGNLVDLDSLRE 152
HG T+ FD S +E + SL E
Sbjct: 109 LHG--TISTCFDFTASPCRECLRIIASSLGE 137
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 278 CIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLD 337
C+ + + L + AA V ++ S+ +++ VP++L+ I + +G +T D
Sbjct: 127 CLRIIASSLGEEAAAVAKVLM--FSNLHQELGNDRDVPVALAHITVHR-QLPSGSGLTPD 183
Query: 338 HVRASL---VQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
L V G F S Y D + + + + ++E +++ RYG+++ R+ RLL
Sbjct: 184 LTEKWLKLLVAEGSGMFHAGRSGLYYFDLKTAMHLVASLQLERILADRYGQESLRLIRLL 243
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILY-KLWKDGYLLMEKLVVTGARQSQ--FLLWKVN 451
++ L+ D+I VE+ A ++L +L++ G + +++ + R LW +
Sbjct: 244 LEN-HYLDQDQIVRMAMVERYAATRVLLNELFQAGLISCQEIPKSADRAPSRCHYLWHAD 302
Query: 452 RQILWKHVLDEMFHA 466
+ K + ++ HA
Sbjct: 303 HASVVKTLQAQLLHA 317
>gi|443898635|dbj|GAC75969.1| RNA polymerase III (C) subunit [Pseudozyma antarctica T-34]
Length = 715
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 44/170 (25%)
Query: 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRY----------------TELSDEQVKNAL 55
HV+ HFG + A++ LL++G LT + ++R+ T S K+ L
Sbjct: 16 HVLLVHFGPIAARIGALLLKRGRLTIREIQRFLNQAPTRTNRGPTDPFTNASTTHTKSTL 75
Query: 56 LVLIQQNCVQAFTTEQPDGFADGPKANTQYVVL--------------------------- 88
+ ++ T P+ PK + +L
Sbjct: 76 VSAPIAGASTSYNTGDPNAPVPVPKLLIEQTILTLIQHGCAWHSSTDPDVADPSQEFFEI 135
Query: 89 -FDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKS 137
+++L R RF +++ I E +V+ +L+HG+L + DR S
Sbjct: 136 NINDVLLRPRFGRYIGIAEDELGDTSARIVKLVLQHGKLQASDIIDRIAS 185
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 111/270 (41%), Gaps = 42/270 (15%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQAT-SSAEKKVKTKNSVP 315
+ SV R +++ F +R + +D VR ++ AA V ++ A SS + V+ S P
Sbjct: 387 DPSVWLRVHYDRFDVHVRDEIMVDAVREKYNNTAAEVFRQLIHAGDSSMRRSVRDVRSAP 446
Query: 316 LSLSSIYEEV----------------------------------IKSEA----GRNMTLD 337
+S++++ ++ I S A G++ T
Sbjct: 447 ISITTLAHKLPSELSLQKGFDRRSFGKDKSALPTRQEFLAEYCAIFSHAEDVSGKSKTSR 506
Query: 338 HVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKS 397
+ + + + + S +++F + E + + + +VV ++G A RI +L
Sbjct: 507 LMAPASDSTTKTAGGSKVASSLTVEFANVAERMRRDLLRNVVEDKFGGAAIRIMNILRDK 566
Query: 398 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQIL 455
G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 567 GK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEAKC 625
Query: 456 WKHVLDEMFHAALNLSLRVSYELDREKELL 485
+LD ++ + +S R + E+ R+ LL
Sbjct: 626 RAWLLDHLYQSLARISQRRNDEMRRQLPLL 655
>gi|346979163|gb|EGY22615.1| RNA polymerase III subunit Rpc82 [Verticillium dahliae VdLs.17]
Length = 666
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/210 (20%), Positives = 96/210 (45%), Gaps = 20/210 (9%)
Query: 336 LDHVRASLVQLGE--LSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 389
LD +R L+ L E FV +++DF+ ++E + EV++V+ + +GR R
Sbjct: 459 LDEMRQHLLLLAESPQGFVRHCGTQGRGQFTVDFKPLMESLRQVEVDAVIEQTFGRHGLR 518
Query: 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLL 447
+ R+L G+L E + ++K D + L G++ ++++ +R +
Sbjct: 519 LTRILRAKGKLDEK-TLPGLALMKKSDVQGKMLALQMAGFVDVQEVPRDNSRTANRTMFF 577
Query: 448 WKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADKR----------TGPLQ 497
W + + ++D+++ L + + RE+ +L+ D++ T
Sbjct: 578 WFFDATRVDNQLMDDVYKTMLRCLQTLDVQRHRERNILSF-VDRKDVKGKEEEVMTAEHY 636
Query: 498 DRYNRIRKVRILLESSQMKLDDAILLFHDF 527
++Y++ ++ L M+LD+ I +F D+
Sbjct: 637 NKYSQFLDLQSKLLGQVMRLDELISVFKDY 666
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 15/137 (10%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
+++++ + HV+ + FG+L A++ LL KG T + R+T L Q+++ L VL+Q
Sbjct: 4 LISKHAAELCAHVVNDLFGELPARIIAVLLSKGRSTIPQLVRHTSLPPRQMRHGLAVLVQ 63
Query: 61 QNCV--QAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
QN + A + P D + VR K + ++ E+ E+ Q
Sbjct: 64 QNLLYHHAIAGSSVASYEANP----------DACYNLVRSGKIIDMVGTEYGLAEQEVFQ 113
Query: 119 GLLE--HGRLT-LKQMF 132
+++ H R++ L Q F
Sbjct: 114 TIMQLGHARVSDLVQAF 130
>gi|332025342|gb|EGI65510.1| DNA-directed RNA polymerase III subunit RPC3 [Acromyrmex
echinatior]
Length = 503
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 115/271 (42%), Gaps = 34/271 (12%)
Query: 240 EKRKHDVLELDECGVA----------DEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDG 289
EK K+D+ LD ++ ++ V ++ NF+ F + LR + I V D
Sbjct: 173 EKPKYDLPNLDLLAISKSLKGQNVEFSDRKVYWKVNFDRFTQDLRDQTVISAVTRKFDKE 232
Query: 290 AANVLSAM-----LQATSSAEKKVKTKNSVPLSLSSIYEEV--IKSEAGRNMTLDHVRAS 342
++ M L+ S A+ S P+ + I E+V + E ++R
Sbjct: 233 TGELMREMINLMYLRTASWAD------TSNPIPYTEIKEQVKKLNYEILERYIDQYLR-- 284
Query: 343 LVQLGELSFV----DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG 398
L++ F+ D+ YS++ + + +E++V++R+G A RIFRL+
Sbjct: 285 LLEEDRTQFIKRVGDSGGGQYSVNMKNAFKELTWTTLENIVTERFGSKAARIFRLVRYEV 344
Query: 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKH 458
+ ++I + K+A + Y L ++ Y+ ++L +G + I
Sbjct: 345 D-VSLEQIQKLAMIPAKEAKFLTYILSQEKYIQTQELKKSGTSSGPTTKLPYHFCIDLNE 403
Query: 459 V----LDEMFHAALNLSLRVSYELDREKELL 485
+ ++ +HA N+ +R YE + K ++
Sbjct: 404 IVEMEIEHCYHALYNIIIRREYESNSNKRMI 434
>gi|380474589|emb|CCF45694.1| RNA polymerase III subunit Rpc82 [Colletotrichum higginsianum]
Length = 417
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/238 (19%), Positives = 106/238 (44%), Gaps = 21/238 (8%)
Query: 310 TKNSVPLSLSSIYEEVIKSEAGRN---MTLDHVRASLVQLGE--LSFV----DASSDSYS 360
+++ P + S E +K E G +DHVR L+ L E F+ ++
Sbjct: 181 SEDDEPRTASGSREARVKFEDGPAPGASRMDHVRQHLLLLAESRQGFLRHCGGQGRGQWT 240
Query: 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKI 420
+DF+ +I+ + EV++V+ + +GR R+ R+L + G+L E + ++K +
Sbjct: 241 VDFKPLIDGFKQTEVDAVIEQSFGRHGLRLTRILREKGKLDEK-MLPSLALMKKGEVQGK 299
Query: 421 LYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYEL 478
+ + G++ ++++ +R + W + + ++D+ + L +
Sbjct: 300 MLAMQMAGFVDVQEVPRDASRTATRTMFFWFFDIERTEAQLVDDFYKTMLRCLQNLEVHR 359
Query: 479 DREKELLNL---------PADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
RE+ +L+ + T ++Y+R +++ L M+LDD + +F D+
Sbjct: 360 YRERNILSFVERNDVKGKEEEVMTAEHYNKYSRYLELQSKLLGHVMRLDDLVAVFRDY 417
>gi|322710712|gb|EFZ02286.1| DNA-directed RNA polymerase III subunit rpc3 [Metarhizium
anisopliae ARSEF 23]
Length = 680
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 21/222 (9%)
Query: 326 IKSEAG---RNMTLDHVRASLVQLGELS--FV----DASSDSYSIDFEKIIEIAQNEEVE 376
+K E G ++ LD +R L+ L E FV +++DFE +++ + E++
Sbjct: 460 VKFEDGAIAKDSRLDQMRQHLLLLAESKHRFVRHCGTQGRGQWTVDFELLMDRLRESELD 519
Query: 377 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436
+ + + +GR R+ R+L + G+L E + ++K D + + G + ++++
Sbjct: 520 AYIEQSFGRHGLRLTRILREKGKLDEK-MLPSAALMKKGDVQGKMLAMQMAGLVDVQEVP 578
Query: 437 VTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELLNLPADK--- 491
+R + W + + + +LD+++ L + E +E+ +L K
Sbjct: 579 KDNSRLANRTLFFWFFDGERVQSQLLDDVYKGMLRCLQTLDVERHKERNILTFVERKDVK 638
Query: 492 ------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
T ++YNR + + L M+LDD + +F D+
Sbjct: 639 GKEEEVMTAEHYNKYNRHLEGQQKLLGQVMRLDDMVAVFRDY 680
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANT 83
++ L KG T + ++ L ++N L VLIQQN + +T PD T
Sbjct: 52 RILVALFTKGRCTLSQLVQHVSLGPRHLRNGLGVLIQQNLLYHYT--DPD------TGGT 103
Query: 84 QYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
Y D + VR K L +++ ++ +LVQ L++ G
Sbjct: 104 SYEANSDACYNLVRSGKILEVINSQYGTAERDLVQTLMQLG 144
>gi|367034616|ref|XP_003666590.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
gi|347013863|gb|AEO61345.1| hypothetical protein MYCTH_2311408 [Myceliophthora thermophila ATCC
42464]
Length = 670
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
D +++DF ++ + E++SV+ + GR R+ R+L G+L E + + + K +
Sbjct: 490 DEWTVDFGPVMNSLREAELDSVIERTCGRQGLRLVRILRAKGKLDEK-ALPNVALMRKPE 548
Query: 417 APKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ + ++ G++ ++++ V + F LW + K +LD + ++ L+V
Sbjct: 549 LQQKMLEMQTAGFVSVQEVPRDVKADVKKSFFLWYCDIDRSLKRLLDTSYRTMVH-CLQV 607
Query: 475 SYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILL 523
E R+KE L KRT G +D RY+R L + M++DD + +
Sbjct: 608 -LEALRQKERDVLETTKRTDVRGRERDIMRKSYYERYSRFLDCERKLFAQVMRIDDLVSV 666
Query: 524 FHDF 527
DF
Sbjct: 667 LRDF 670
>gi|219121737|ref|XP_002181217.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407203|gb|EEC47140.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 559
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 24/181 (13%)
Query: 309 KTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIE 368
K V +++SS +EE+ RN T+ VR ++G+ D Y I +++
Sbjct: 351 KKMGGVTMAVSSAWEEL---SVVRNPTV--VR----RVGD--------DRYEIACSQLVA 393
Query: 369 IAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDG 428
+ V +V R+G A R+ +L K G LE+D ++ + KD ++L++L++
Sbjct: 394 YLRKRTVHQIVHDRHGEVAARVVSILGKKG-WLESDNLASFAMIPAKDTREVLHQLYRSQ 452
Query: 429 YLLMEKLVVTGARQ----SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKEL 484
Y+ E + +RQ S LW V+ Q L + + + + + LR ++++ K+
Sbjct: 453 YV--ELFQLANSRQHNPASTIYLWLVHEQRLVQKAIANVASSLWYVRLRRQHQIEIGKDW 510
Query: 485 L 485
+
Sbjct: 511 I 511
>gi|66356884|ref|XP_625620.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226721|gb|EAK87700.1| hypothetical protein cgd4_110 [Cryptosporidium parvum Iowa II]
Length = 618
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-----------RQNVKRYTELSDEQV---KNALLVL 58
+I+ HFG L A + + L+ GPL +++ K + S +N+++ L
Sbjct: 11 IISTHFGGLPAIIIKKLVVNGPLPMDRLYHLVIKDKESSKYLSSNSKNNFLSFRNSMMYL 70
Query: 59 IQQNCVQAFTTEQPDGFADGPK--ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVEL 116
+ C+ + P+ D K N + V D+++ R+RF ++ + + + C +
Sbjct: 71 VHHYCIIYYEISDPNIELDNSKEGKNVVFEVNIDHVISRLRFPLYMAHIEKLLGETCKYI 130
Query: 117 VQGLLEHGRLTLK 129
+++HGR++ K
Sbjct: 131 FMEVIKHGRISTK 143
>gi|154331522|ref|XP_001561579.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058897|emb|CAM41465.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 329
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 356 SDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKK 415
SD Y++D +++ Q E VV RYG RI RLL + LE +++ +
Sbjct: 127 SDLYALDDVTAVQLLQEAVCERVVYSRYGVLGVRIMRLLLQH-HFLEERTLAEQSVATYV 185
Query: 416 DAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWKVNRQILWKHVLDEMFHAALNL 470
A ++L++++KDG+LL +++ T A ++ LW ++ W L L
Sbjct: 186 KAREVLHRMFKDGFLLQQEVPRTSALVERSAKASVYLWGLS----WSATLLPAVRERLAK 241
Query: 471 SLRVSYELDREKE 483
+L +++ RE +
Sbjct: 242 TLTIAWVKLREAQ 254
>gi|354544740|emb|CCE41465.1| hypothetical protein CPAR2_800170 [Candida parapsilosis]
Length = 596
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V + H G++ +K+ L+ +G T + + + T+L+ + VK+AL+ LIQ CV
Sbjct: 22 VASTHLGEVASKIISVLIAQGRQTAKELSQRTQLTLKSVKSALVSLIQLGCVY------- 74
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ-- 130
F +T Y + + + L ++QE+ ++ E+VQ ++E G + L++
Sbjct: 75 --FWQDRDKSTHYSLNETGLKILINSGDILNHITQEYGEEEAEVVQNVMELGHIKLEEYL 132
Query: 131 -MFDRAK 136
FD+ K
Sbjct: 133 KQFDQDK 139
>gi|160331229|ref|XP_001712322.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
gi|159765769|gb|ABW97997.1| hypothetical protein HAN_1g161 [Hemiselmis andersenii]
Length = 454
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 39/219 (17%)
Query: 324 EVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRY 383
E++KS+ + + + V + F+ + I + EI +N+ E+++ ++
Sbjct: 257 EILKSQNFNEINITEIFDGGVM--DRCFLRIKNSRLKISVKFFFEIIRNKIFENLIGNQF 314
Query: 384 GRDAYRIFRLLSKSGRLLETD--KISDTTFVEKKDAPKILYKLWKDGYLLMEK----LVV 437
G++ RIF++L+K LE++ +IS +++E K K L+K++K G + E+
Sbjct: 315 GKNFLRIFKILAKD---LESEEKQISIQSWLEVKIIRKELFKMYKLGLVTFEEKNCSFFQ 371
Query: 438 TGARQSQFLLWKVNRQILWKHVLDEMFHAALN----------LSLRVSYEL-DREKELLN 486
+ ++S L+WK+N L K + E+ + N L++S+ D+ K L N
Sbjct: 372 STTKKS--LIWKINFLSLKKRFISEILKSIYNLLLKLENLQLFFLKISFFFKDQPKNLKN 429
Query: 487 LPADKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLFH 525
+R G L +S ++LD+ +L+ +
Sbjct: 430 YFQHQRVG---------------LTTSILRLDEILLIIY 453
>gi|358371561|dbj|GAA88168.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus kawachii
IFO 4308]
Length = 628
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ V +T+ + DG T Y + VR K L + + + L++ +
Sbjct: 61 HHLVYHYTS-----YDDG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETI 112
Query: 121 LEHG 124
+ G
Sbjct: 113 MYLG 116
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 449 TWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKLDEK-RLQEISLLPFKDL 507
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + +L++ + A R+
Sbjct: 508 RQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSSILEDTYKAMSRCMQRLR 567
Query: 476 YELDREKELL 485
+E +R KE L
Sbjct: 568 FERNRLKEFL 577
>gi|330921180|ref|XP_003299319.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
gi|311327077|gb|EFQ92598.1| hypothetical protein PTT_10280 [Pyrenophora teres f. teres 0-1]
Length = 681
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L A+V L R G + ++ R + LS Q+K L++L+QQ+ + F
Sbjct: 23 YGELAARVYSILARHGRQSLASIARASYLSGRQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD 133
G A T Y + + N VRF K ++ F ++ ++ L+ G + + D
Sbjct: 73 GSNAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANIMSNLVALGHTRIADLKD 129
>gi|121717643|ref|XP_001276111.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
gi|206558078|sp|A1C4R7.1|RPC3_ASPCL RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119404309|gb|EAW14685.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus clavatus NRRL 1]
Length = 635
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 456 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 514
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 515 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCFQRLR 574
Query: 476 YELDREKELL 485
+E +R KE L
Sbjct: 575 FERNRLKEFL 584
>gi|312078385|ref|XP_003141715.1| hypothetical protein LOAG_06131 [Loa loa]
Length = 364
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 79/413 (19%), Positives = 157/413 (38%), Gaps = 70/413 (16%)
Query: 10 AVHVITNHFGDLVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66
V ++ +HFG + A V LL + P+ Q ++ + +++ A+++L Q +Q
Sbjct: 9 CVEILEDHFGPIAAAVGSVLLNEAVPLPVIFQRLR--NQFRIPEIRRAMVILEQHGILQ- 65
Query: 67 FTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
F + Y +IL VR A+ + + + + + ++ GRL
Sbjct: 66 --------FTQDERQRIIYSAQVIDILRLVRSARCSFVAKTLYGEIAEAICEEIISQGRL 117
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEEEGPARKK 186
T R + + V ++ ++ +L +V R P E
Sbjct: 118 TCSSCIRRVVARLE----VSINEVKTAFARLAETQFVMRYPKVESNFC------------ 161
Query: 187 GSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDV 246
G +K +P + ++ A +E +V K + N++ E
Sbjct: 162 GCPIFEKHPDPFIMPDVILNA------------KKLEINVDSKSRKRKNLSNEEDDP--- 206
Query: 247 LELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRA--HLDDGAANVLSAMLQATSSA 304
+ ++ + N+ F R LR + ++ + + + L +L+ +
Sbjct: 207 ----------DGNIYWHLNYIRFERYLRDEMVVNAYESGDAVHENCVKTLRILLKIS--- 253
Query: 305 EKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDH--VRASLVQLGELSFV-----DASSD 357
++K +S S +V+++ ++L + +L L E + D++
Sbjct: 254 --EIKADSSAAASFPISIHDVLRAANSNEVSLGKHDIEVALRLLCESGGIVRKVGDSAGG 311
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTT 410
+ IDFEK I VES + +R A R+FRLL + G LE D +S T
Sbjct: 312 LFVIDFEKAIATHCQRHVESAIRERLDMRAVRVFRLLMQKG-FLEEDHVSFMT 363
>gi|145242812|ref|XP_001393979.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus niger
CBS 513.88]
gi|206558114|sp|A2QUS7.1|RPC3_ASPNC RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|134078536|emb|CAK40457.1| unnamed protein product [Aspergillus niger]
gi|350640252|gb|EHA28605.1| hypothetical protein ASPNIDRAFT_50014 [Aspergillus niger ATCC 1015]
Length = 627
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M ++Y + ++ ++FG+L A++ L R L+ +K Y+ LSD Q+++ L +IQ
Sbjct: 1 MTSQYAAELCALLVEDNFGELFARIFSTLQRYDRLSLPRLKFYSRLSDRQLRHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ V +T+ + DG T Y + VR K L + + + L++ +
Sbjct: 61 HHLVYHYTS-----YDDG---VTYYEPNLQAAYYLVRSGKILEFIEERLGKYAATLMETI 112
Query: 121 L 121
+
Sbjct: 113 M 113
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 448 TWTVEFRHLARKLRHLELERMIEARYGDVALRVIRVLHAKGKLDEK-RLQEISLLPFKDL 506
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + +L++ + A R+
Sbjct: 507 RQVLASMQSGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRIRSSILEDTYKAMSRCMQRLR 566
Query: 476 YELDREKELL 485
+E +R KE L
Sbjct: 567 FERNRLKEFL 576
>gi|448507857|ref|XP_003865864.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
gi|380350202|emb|CCG20422.1| Rpc82 protein [Candida orthopsilosis Co 90-125]
Length = 629
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 12/127 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ +K+ L+ G T + + + T+L+ + +K+AL+ LIQ +CV + +
Sbjct: 60 VALTHLGEVASKIISTLIAHGRQTAKELSQRTQLTLKSIKSALVSLIQLSCVNFWQEKDK 119
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQ-- 130
+ + + +V +IL+ + +QE+ ++ E VQ ++E G + L++
Sbjct: 120 STYYSFNETGLKILVNSGDILNHI---------TQEYGEEEAEAVQNVMELGHIKLEEYL 170
Query: 131 -MFDRAK 136
FD+ K
Sbjct: 171 KQFDQDK 177
>gi|389593619|ref|XP_003722063.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438565|emb|CBZ12325.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 604
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 387 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 440
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 441 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 499
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++ RE +
Sbjct: 500 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 529
>gi|343429865|emb|CBQ73437.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 707
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 46/272 (16%)
Query: 257 EQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKK-VKTKNSVP 315
+ +V R +F+ F LR + +D VR ++ AA V ++ A ++ KK V+ S P
Sbjct: 379 DPTVYLRVHFDRFDVHLRDETMVDAVREKYNNTAAQVFRHLIHAGDASTKKSVRDVRSAP 438
Query: 316 LSLSSIYEEV---IKSEAG---RNMTLDHVRASLVQLGEL-------------------- 349
+S++++ ++ + + G R+ D +ASL E
Sbjct: 439 ISITTLAHKLPSDLSLQKGFDRRSFGKD--KASLPSRQEFLAEYCAIFSHSEDVSGKSKT 496
Query: 350 -SFVDASSDS-------------YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 395
+ +SDS +I++ + E + + + +VV +++G A RI +L
Sbjct: 497 SRLMAPASDSTTKTAGGSKVASSLTIEYSNVAERMRRDLLRNVVEEKFGTAAIRIMNILR 556
Query: 396 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQ 453
+ G+ LE IS V + + +L+ L ++++ T R F LW V+
Sbjct: 557 EKGK-LEEKHISKLALVSISETRDLCSRLFHASLLGLQEVPKTKDRDPAKTFFLWFVDEA 615
Query: 454 ILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+LD ++ + L R + E+ ++ LL
Sbjct: 616 KCRAWLLDHLYQSLARLGQRRNEEMRKQMPLL 647
>gi|408395935|gb|EKJ75106.1| hypothetical protein FPSE_04726 [Fusarium pseudograminearum CS3096]
Length = 634
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T D T Y D + +R K L ++ ++ EL Q L++
Sbjct: 64 LIYHHT--------DTNNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQ 115
Query: 123 --HGRLT-LKQMF 132
H R+ L Q F
Sbjct: 116 LGHARIADLSQAF 128
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 456 WTVDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 514
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 515 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEV 574
Query: 477 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E +E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 575 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 634
>gi|68480567|ref|XP_715778.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|46437417|gb|EAK96764.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEKDRK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDGAEIIQNILIHGHVKIEDYLTQ 135
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 136 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|68480462|ref|XP_715829.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
gi|74590267|sp|Q5A246.1|RPC3_CANAL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|46437470|gb|EAK96816.1| potential RNA Pol III subunit C82 [Candida albicans SC5314]
Length = 595
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 24 TTHLGEIASCIISILISNGRLTAREISNRTKIPTKNIKSALVSLIQLNCIYYWQEEKDRK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQ 135
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 136 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 167
>gi|448090129|ref|XP_004196993.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|448094511|ref|XP_004198024.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359378415|emb|CCE84674.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
gi|359379446|emb|CCE83643.1| Piso0_004227 [Millerozyma farinosa CBS 7064]
Length = 609
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 11/186 (5%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V H G++ A V L+ G LT +++ + +++ + VK L+ LIQ NC+
Sbjct: 24 VAKTHLGEVAAVVISILISYGRLTAKDISQRSKIQLKLVKLTLVSLIQLNCIYY------ 77
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ D N Y IL + + + + +F ++ EL Q L+E G + ++
Sbjct: 78 --WHDKTSNNVYYSFNERGILMLLHSGEIIVHIKNKFGEEAAELTQHLIEFGNIKIEDYL 135
Query: 133 DRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISEE--EGPARKKGSKS 190
K E + + + T L+ V+ P E L M + EE R
Sbjct: 136 INFKDEESKYKRESIITTLFTQKWLIGVSKVDFNPI-EDLWMTVYEEVLRNTPRSTTMSE 194
Query: 191 AKKIGE 196
AK+I E
Sbjct: 195 AKRIAE 200
>gi|389592804|ref|XP_003721673.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438205|emb|CBZ11958.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 377
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y++D + + Q E VV RYG RI +LL
Sbjct: 95 TMPSTRALLVK------PHSQSNFYAVDHVTAVHLLQEAVCERVVHSRYGVLGVRIMKLL 148
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 149 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 207
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++ RE +
Sbjct: 208 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 237
>gi|425774118|gb|EKV12435.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum PHI26]
gi|425778571|gb|EKV16695.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Penicillium digitatum Pd1]
Length = 641
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y LSD Q+ + L +IQ
Sbjct: 1 MMSQCCAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLSDRQLHHGLCAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ + FT+ DG NT Y VR K L ++ + ++++ +
Sbjct: 61 HHLIYHFTS-----LDDG---NTYYEANPQAAYSLVRSGKILQLVESRLGEYAAQVLEAI 112
Query: 121 LEHGRLTLKQM 131
+ G ++ +
Sbjct: 113 MMLGHSSIAHL 123
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 326 IKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGR 385
I S+ N+T HV + L ++ + F + ++ E+E ++ RYG
Sbjct: 443 ILSQPPLNLTTKHVISGL-------------PTWRVAFRGLSRKLRHLELERMIESRYGD 489
Query: 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ- 444
A R+ R+L G+L E ++ + + + KD + L + G++ ++++ RQ
Sbjct: 490 VALRVVRVLHSKGKLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSK 548
Query: 445 -FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
LW + + +L++ + A R+ +E RE++ L
Sbjct: 549 TIYLWYYDPDRVCSSILEDTYKAMSRCLQRIKFERSRERDFL 590
>gi|294867271|ref|XP_002765036.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
gi|239864916|gb|EEQ97753.1| hypothetical protein Pmar_PMAR004492 [Perkinsus marinus ATCC 50983]
Length = 699
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 42/164 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQ---PDGFADGPKANTQYVVLF----DNI 92
++AL++L+Q N + Q P G A Q++VL+ +
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAG--APPQHLVLYSASPSAV 143
Query: 93 LHRVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 133
+ R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 144 IARLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
SY +D++ ++ E ++++++YG R+++ L +G ET ++++ +++++
Sbjct: 523 SYRVDWKNVLAKLTEELTHAILTEKYGVVGARVYQYLLTTGYKSETIRVAERCMIDREEC 582
Query: 418 PKILYKLWKDGYLLME---KLVVTGARQSQ-----FLLWKVNRQILWKHVLDEMFHAALN 469
+L++L + + + K V+ + Q F L+ ++ +++ + AALN
Sbjct: 583 QMLLHRLHSEHIIKISEVPKSVIAPSLNQQASIISFWLYYLDPPTTKMAMMELVARAALN 642
Query: 470 LSLRVSYELDR 480
+ +R +E+ R
Sbjct: 643 MRVRFRHEVAR 653
>gi|169776609|ref|XP_001822771.1| DNA-directed RNA polymerase III subunit RPC-3 [Aspergillus oryzae
RIB40]
gi|238503327|ref|XP_002382897.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
gi|121800841|sp|Q2U9X7.1|RPC3_ASPOR RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|83771506|dbj|BAE61638.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220691707|gb|EED48055.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus flavus NRRL3357]
Length = 653
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 474 TWTVEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDL 532
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL++ + A R+
Sbjct: 533 RQVLASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLR 592
Query: 476 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 526
+E R KE L ++RY + R LL +LD+ + + D
Sbjct: 593 FERSRLKEFLEKTERSDVKGNEERYLSEAELTLLGQWRAKEALLLGEVARLDEMVAVIRD 652
Query: 527 F 527
+
Sbjct: 653 Y 653
>gi|391874457|gb|EIT83339.1| RNA polymerase III (C) subunit [Aspergillus oryzae 3.042]
Length = 653
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 474 TWTVEFRHLARKLRHLELERIIEARYGDVALRVVRVLHDKGKLDEK-RLQEISLLPFKDL 532
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL++ + A R+
Sbjct: 533 RQVLASMQTGGFVDLQEVPRDALRQPSKTIFLWFYDPDRVGNSVLEDTYKAMSRCLQRLR 592
Query: 476 YELDREKELL 485
+E R KE L
Sbjct: 593 FERSRLKEFL 602
>gi|154319039|ref|XP_001558837.1| hypothetical protein BC1G_02471 [Botryotinia fuckeliana B05.10]
gi|206558269|sp|A6RPU8.1|RPC3_BOTFB RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
Length = 637
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DFE++I+ + E++S++ + +G+ +R+ R++ K G+ LE I+ ++++D+
Sbjct: 459 WTVDFERVIDRLRESELDSIIYENFGQIGHRLVRVMRKMGK-LEEKHIAKLALIKQQDSR 517
Query: 419 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
L + G + ++++ R LW + + +LD + A R+
Sbjct: 518 TTLVNMQMHGMVDIQEVPRDTGRMIVRTIHLWFCDEDRVTSLLLDRTYKAMSRCLQRLDV 577
Query: 477 ELDREKELLNLPADKRTGPLQDRY------NRIRKVRILLES--SQM-KLDDAILLFHDF 527
E R+ ++ L ++ + N++R++R E Q+ +LD+ + +F D+
Sbjct: 578 EKRRKANIIALSERTDVQGQEEAFLRPEQMNQLREIRAKEEDLLGQICRLDELVGIFQDY 637
>gi|429857629|gb|ELA32486.1| RNA polymerase iii subunit rpc82 [Colletotrichum gloeosporioides
Nara gc5]
Length = 653
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/181 (18%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF+ ++E + EV++V+ + +GR R+ R+L G+L E + ++K+D
Sbjct: 475 WTVDFKPLMEGLKQTEVDAVIEQSFGRHGLRLTRILRDKGKLDEK-MLPSLALMKKQDVQ 533
Query: 419 KILYKLWKDGYLLMEKLVVTGARQS--QFLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G++ ++++ +R + W + + + ++D+ + L +
Sbjct: 534 GKMLAMQMAGFVDVQEVPKDASRTATRTMFFWFFDIERIESQLVDDYYKTMLRCLQNLEV 593
Query: 477 ELDREKELLNLPADKR----------TGPLQDRYNRIRKVRILLESSQMKLDDAILLFHD 526
RE+ +L+ ++R T ++Y+ ++ L M+LDD + +F D
Sbjct: 594 HRYRERNILSF-VERRDVKGKEEEVMTAEHYNKYSTFLDLQSKLLGHVMRLDDLVSVFRD 652
Query: 527 F 527
+
Sbjct: 653 Y 653
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
++T++G + H++ + G+L A++ L KG + + T L+ Q+++ L VL+Q
Sbjct: 2 LVTKHGAELCAHLVNDICGELPARILAVLFSKGRSNIATLVQSTGLNPRQLRHGLAVLVQ 61
Query: 61 QNCVQAFTTEQPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQ 118
Q+ V + +NT Y D + R K + ++ E+ E+VQ
Sbjct: 62 QSLV----------YHQSDSSNTTGVYEANPDGCYNLCRTGKIIEMVGIEYGPAEQEVVQ 111
Query: 119 GLLE--HGRLT-LKQMFD 133
+++ H R++ L Q F+
Sbjct: 112 TIMQLGHARVSDLAQAFE 129
>gi|341039022|gb|EGS24014.1| hypothetical protein CTHT_0007250 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 662
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
+ +++DFE +++ + E++SV+ + GR R+ R+L G+L E + + + K +
Sbjct: 482 NEWTVDFEPVMKALREAELDSVIERTSGRQGLRLVRILRAKGKLDEK-ALPNVALMRKSE 540
Query: 417 APKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ + ++ G++ ++++ V + F LW + + +L+ + L+ L+V
Sbjct: 541 LQQKMLEMQTAGFVHVQEVPRDVKADVKKSFFLWYCDVEKSLSRLLETSYVTMLH-CLQV 599
Query: 475 SYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILL 523
L R KE L KRT G +D RY R L + M+LDD + +
Sbjct: 600 LEAL-RRKEKDVLQTTKRTDVRGREKDAMRKEYYERYARFLACERKLFAQVMRLDDLVSV 658
Query: 524 FHDF 527
DF
Sbjct: 659 LRDF 662
>gi|154277094|ref|XP_001539392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|206558266|sp|A6R9K6.1|RPC3_AJECN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|150414465|gb|EDN09830.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 649
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 28/155 (18%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + +IT++FG+L A PL R + + T LS QV++ L VLIQQ
Sbjct: 1 MSQYAAELCKLLITDNFGELYA----------PLPR--IVQNTRLSPRQVRHGLAVLIQQ 48
Query: 62 NCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLL 121
+ +T+ DG A Y + + VR + L ++ ++ + +++ +L
Sbjct: 49 RLIYHYTSLD-DGIA-------YYEASWMTAYNLVRSGRILQLVEEKLGKYVAKVLSTIL 100
Query: 122 EHGRL------TLKQMFDRAKSSEKEGNLVDLDSL 150
HG + TL ++ R + S K G LV + L
Sbjct: 101 YHGHVRISYLETLPEL--RPQVSSKAGKLVAANGL 133
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 470 TWAVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 528
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 529 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDLDRVARMVLEDTYKCMSRCLQRIG 588
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 589 VERNKLKLFL 598
>gi|294893388|ref|XP_002774447.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
gi|239879840|gb|EER06263.1| hypothetical protein Pmar_PMAR006028 [Perkinsus marinus ATCC 50983]
Length = 667
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 42/164 (25%)
Query: 10 AVH-----VITNHFGDLVAKVCECLLRKGPLTRQNVKRYT--ELS-------DEQV---- 51
AVH +IT+ FG V+ V CLL +GP+ + +Y ELS D +V
Sbjct: 26 AVHKLCCDIITDQFGPAVSAVASCLLSRGPMRFPELSKYVNEELSWPLDLRTDAKVPHSM 85
Query: 52 ------------KNALLVLIQQNCVQAFTTEQ---PDGFADGPKANTQYVVLF----DNI 92
++AL++L+Q N + Q P G A Q++VL+ +
Sbjct: 86 HEITNRMTWSCIRDALMILLQNNIAVSHMVRQVQVPSQEKAG--APPQHLVLYSASPSAV 143
Query: 93 LHRVRFAKFLTILSQEFDQQ---CVELVQGLLEHGRLTLKQMFD 133
+ R+R+ +++ ++ Q+ ++ V ++ +L GR+ + +
Sbjct: 144 IARLRYPRYMNLVQQQLGRRRPVAVHVMAEVLRRGRVPWDDLIE 187
>gi|255931675|ref|XP_002557394.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582013|emb|CAP80176.1| Pc12g05490 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 641
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 326 IKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGR 385
I S+ N+T HV + L ++ + F + ++ E+E ++ RYG
Sbjct: 443 ILSQPPLNLTTKHVISGL-------------PTWRVAFRGLARKLRHLELERMIESRYGD 489
Query: 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ- 444
A R+ R+L G+L E ++ + + + KD + L + G++ ++++ RQ
Sbjct: 490 VALRVVRVLHAKGKLDEK-RLQEISLLPFKDLRQTLASMQTGGFVDLQEVPRDAQRQPSK 548
Query: 445 -FLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
LW + + +L++ + A R+ +E RE++ L
Sbjct: 549 TIYLWYYDPDRVCSSILEDTYKAMSRCLQRIKFERSRERDFL 590
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M+++ + + +I ++FG+L A++ L R LT +K Y L+D Q+ + L +IQ
Sbjct: 1 MMSQCSAELCMLLIEDNFGELFARIFTVLQRYERLTLPRLKFYARLTDRQLHHGLSAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGL 120
+ + FT+ DG NT Y VR K L ++ + ++++ +
Sbjct: 61 HHLIYHFTS-----LDDG---NTYYEANPQAAYSLVRSGKILQLVENRLGEYAAQVLEAI 112
Query: 121 LEHGRLTLKQM 131
+ G ++ +
Sbjct: 113 MMLGHSSIAHL 123
>gi|238879751|gb|EEQ43389.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 590
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + E+
Sbjct: 19 TTHLGEIASCIISILISNGRLTAREISNRTKIPIKNIKSALVSLIQLNCIYYWQEEKDRK 78
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF-- 132
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 79 FYYSLKETG--LLLF------VYSGDIINHIKRQYGEDEAEIIQNILIHGHVKIEDYLTQ 130
Query: 133 ---DRAKSSEKEGNLVDLDSLRETLVKLVTAHY 162
D++ ++E + L + L+KL H+
Sbjct: 131 FNHDKSMKIDQENKFLKLFN-DNWLIKLQDYHF 162
>gi|146075711|ref|XP_001462768.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066847|emb|CAM65309.1| conserved hypothetical protein, partial [Leishmania infantum JPCM5]
Length = 328
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 111 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 164
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 165 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 223
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++ RE +
Sbjct: 224 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 253
>gi|58267762|ref|XP_571037.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227271|gb|AAW43730.1| hypothetical protein CNE05090 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 455
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 121/279 (43%), Gaps = 37/279 (13%)
Query: 241 KRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQA 300
KR+ ++E +Q V R N++ + +R+ + + GA V+ A+L A
Sbjct: 116 KRRKGGKAIEESDYVLKQDVHLRVNYDRYGVLMRNDLIVKAAEDRWNKGAGIVMRAVLDA 175
Query: 301 T---SSAEKKVKTKNSVPLSLSSIYEEVIKSEA----------GRNMTLDHVRASLVQL- 346
+ +S K +T + P+ ++SI + S A ++ D VR L L
Sbjct: 176 SLRDTSLLKDDRTHD--PVGINSIISLIPPSSAPILLAGLGLSSKSSIPDLVRTYLSILA 233
Query: 347 GE-----------LSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLS 395
GE L +++ Y ++FE I + + +V ++ G A R+ +++
Sbjct: 234 GEDQLTGTGAGVFLQREGSTNPGYKVEFEAICVKMREAMLSDLVREKLGDKAARVLAVVT 293
Query: 396 KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR---------QSQFL 446
+S + ET I D + KDA IL +L K + +++ T A+ +++
Sbjct: 294 RSSKAFET-TIRDCAMLPLKDARYILAELQKLSLVETQEVPKTAAKSRANMPSSSSAEYH 352
Query: 447 LWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
LW V+ + +L ++ N+ R E+D++K +L
Sbjct: 353 LWAVDLSRCYSVLLSSVYKTMGNILQRRRAEMDKKKVVL 391
>gi|313230088|emb|CBY07792.1| unnamed protein product [Oikopleura dioica]
Length = 281
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
Y++ K++E + V +S +YG DA +I LL + G E ++ T +++KDA
Sbjct: 66 YTVLLFKMVEKMVQQCVLQWISTKYGMDARKIMALLFE-GNYFEPKNVAKTCVMDEKDAN 124
Query: 419 KILYKLWKDGYLLMEKLVVTG 439
++LY+L DG + + + G
Sbjct: 125 QVLYRLMNDGLVSFQDMTPAG 145
>gi|171690080|ref|XP_001909972.1| hypothetical protein [Podospora anserina S mat+]
gi|170944995|emb|CAP71106.1| unnamed protein product [Podospora anserina S mat+]
Length = 644
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 18/187 (9%)
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
++ +++DF ++ + E+++ + GR+ R+ R+L G+L E I + K
Sbjct: 462 GAEEWTVDFVPLMAALRQAEIDATIENTVGREGVRLVRMLRAKGKLDEK-AIMSVALMRK 520
Query: 415 KDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 472
D K L ++ K G++ +++ + F LW + + + +LD + ++ SL
Sbjct: 521 ADMSKKLAEMHKYGFVQTQEVPREAKADVKKSFFLWYFDGTMALERILDVSYKTMIH-SL 579
Query: 473 RVSYELDREKELLNLPADKRTGPLQDRYNRIRKV------------RILLESSQMKLDDA 520
+V L REK+ L KR+ +++RK+ R+LL Q ++DD
Sbjct: 580 QVLDTL-REKDQHVLSLIKRSDVKGQEDDKLRKIHKEKLTQFLKLERMLLGQIQ-RVDDL 637
Query: 521 ILLFHDF 527
+ + D+
Sbjct: 638 VAVLRDY 644
>gi|146075658|ref|XP_001462755.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134066834|emb|CAM65296.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 192
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 48 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 101
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 102 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 160
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++ RE +
Sbjct: 161 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 190
>gi|398009521|ref|XP_003857960.1| hypothetical protein, conserved [Leishmania donovani]
gi|322496163|emb|CBZ31235.1| hypothetical protein, conserved [Leishmania donovani]
Length = 192
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG RI +LL
Sbjct: 48 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVRIMKLL 101
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA-----RQSQFLLWK 449
+ LE +++ + ++L++++KDG+LL +++ T A ++ LW
Sbjct: 102 LQH-HFLEERTLAEQSIATYVKVREVLHQMFKDGFLLQQEVPRTSALVERSAKASVYLWG 160
Query: 450 VNRQILWKHVLDEMFHAALNLSLRVSYELDREKE 483
++ W L + L +L +++ RE +
Sbjct: 161 LS----WSATLLPVVRERLAKTLTIAWAKLREAQ 190
>gi|241958266|ref|XP_002421852.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645197|emb|CAX39796.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 610
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
T H G++ + + L+ G LT + + T++ + +K+AL+ LIQ NC+ + ++
Sbjct: 24 TTHLGEIASCIISILISNGRLTAKEISNRTKIPFKNIKSALVSLIQLNCIYYWQEDKNGK 83
Query: 75 FADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLK----- 129
F K ++LF V + + +++ + E++Q +L HG + ++
Sbjct: 84 FYYSLKETG--LLLF------VYSGDIINHIKRQYGDEEAEIIQNILIHGHVKIEDYLNQ 135
Query: 130 --QMFDRAKSSEKEGN 143
Q D++KS+ + N
Sbjct: 136 FNQQDDKSKSNSMKIN 151
>gi|258571533|ref|XP_002544570.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904840|gb|EEP79241.1| predicted protein [Uncinocarpus reesii 1704]
Length = 652
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL G PL R + + T LS QVK+ L+VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLHHGRQPLPR--IVQNTHLSPRQVKHGLVVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T+ F DG T Y + + VR KF ++ + +
Sbjct: 59 QQHLVFHCTS-----FDDGI---TYYESDWRAAYNLVRPGKFTQLVKNRLGKHAARVFST 110
Query: 120 LLE--HGRLT-LKQMFDRAKSSEKEGNLVDLDSLRE 152
+L H +++ L+ + + SE G + ++ E
Sbjct: 111 ILSLGHAKISYLESLPELQPGSEPAGKMNGVNGTHE 146
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++++++ + ++ E+E +V R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 473 TWAVEYRHLARKLRHLELERLVEARFGSFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 531
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 532 RQILGQMASSGFVELQEVPRDAQRQPSRTIYLWFYDADRVRLMVIEDTYKSMSRCLQRIR 591
Query: 476 YELDREKELL 485
E ++ K LL
Sbjct: 592 VEREKLKYLL 601
>gi|67902570|ref|XP_681541.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
gi|40739820|gb|EAA59010.1| hypothetical protein AN8272.2 [Aspergillus nidulans FGSC A4]
Length = 566
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 387 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 445
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 446 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 505
Query: 476 YELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQMKLDDAILLFHD 526
+E R K+ L ++ ++ + +R+R+ R LL +LDD I + D
Sbjct: 506 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 565
Query: 527 F 527
+
Sbjct: 566 Y 566
>gi|353526281|sp|Q5ATV8.2|RPC3_EMENI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|259481063|tpe|CBF74254.1| TPA: DNA-directed RNA polymerase III subunit rpc3 (RNA polymerase
III subunit C3) [Source:UniProtKB/Swiss-Prot;Acc:Q5ATV8]
[Aspergillus nidulans FGSC A4]
Length = 623
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 84/181 (46%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E +V RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 444 NWTVEFRHLARKLRHLELERIVEARYGDVALRVLRVLQAKGKLDEK-RLQEISLLPFKDL 502
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + +L + + A R+
Sbjct: 503 RQVLASMQTGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRARDSMLQDTYKAMSRCLQRLK 562
Query: 476 YELDREKELL------NLPADKRTGPLQDRYNRIRKVR---ILLESSQMKLDDAILLFHD 526
+E R K+ L ++ ++ + +R+R+ R LL +LDD I + D
Sbjct: 563 FERGRLKDFLEKTERSDVKGNEELYLSEGELDRLREWRAKEALLIGEVARLDDMIAVMRD 622
Query: 527 F 527
+
Sbjct: 623 Y 623
>gi|345560340|gb|EGX43465.1| hypothetical protein AOL_s00215g201 [Arthrobotrys oligospora ATCC
24927]
Length = 627
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ + +G+L ++V LL G T + R ++ + VK L+VLIQQ+ V +T E
Sbjct: 12 LVRDTYGELSSRVVAALLEYGRSTLYTIVRRVKIPERVVKQTLVVLIQQHLVLHYTNE-- 69
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG--LLEHGRLT 127
DG D ++ +++ +LH R + + + F + ++ LL H R++
Sbjct: 70 DGGRDATHYECNWLQIYE-LLHSGRMVR---TIEERFGSEAASVISNFLLLGHARVS 122
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++D +K+ E + E+E +V +R+G A R+ R++ G++ E ++DT + +KD
Sbjct: 448 GWTVDTQKLCEALRIRELEQIVEERFGGIATRLVRIIKDKGKMDEKG-LADTALLRQKDI 506
Query: 418 PKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
L L + G+L ++++ T R F + + ++ +L++ + A + R+
Sbjct: 507 RAHLGVLHERGFLHIQEVPKTAERLPARTFYFFYFDEKMSKMAMLNDFYKAMSRILQRID 566
Query: 476 YE 477
+E
Sbjct: 567 HE 568
>gi|336275208|ref|XP_003352357.1| hypothetical protein SMAC_07798 [Sordaria macrospora k-hell]
gi|380088461|emb|CCC13616.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 625
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 357 DSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKD 416
D +++DF+ ++E + E++S++ + GR R+ R+L G+L E + + + K D
Sbjct: 445 DEWTVDFKPLMENLRATELDSIIEQTCGRQGLRLTRILRTKGKLGE-QALQSLSLMRKVD 503
Query: 417 APKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHVLDEMFHAALNLSLRV 474
+ + ++ G+ +++ + LW + + + ++ + + A + L+V
Sbjct: 504 LQQKMLEMRLAGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSGLIAKCY-ATMVHCLQV 562
Query: 475 SYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAILL 523
E+ R+KE L KRT G +D R+ + K LL + M++DD + L
Sbjct: 563 -LEVRRQKEKAVLSLAKRTNVKGKEKDMMRDESYARFAKFLKDEKLLMAEVMRIDDTLAL 621
Query: 524 FHDF 527
DF
Sbjct: 622 LQDF 625
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++L+ QVKN L VL Q N + F T D
Sbjct: 19 YGQLPARVYATLFQRGKLSIRLITQFSKLNARQVKNGLCVLQQHNLL--FYT------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
+Y V ++ + VR K L ++ + +++Q LL G+
Sbjct: 71 ANSGEAEYSVNHESAYNLVRAGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
>gi|119498711|ref|XP_001266113.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
gi|206558087|sp|A1CZP6.1|RPC3_NEOFI RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|119414277|gb|EAW24216.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Neosartorya fischeri NRRL 181]
Length = 655
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 476 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 534
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 535 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 594
Query: 476 YELDREKELL 485
+E R K+ L
Sbjct: 595 FERSRIKDFL 604
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQQ+ V +T+
Sbjct: 32 LVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQQHLVYHYTS--- 88
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
+ DG T Y + + VR K L + + + ++ ++ G
Sbjct: 89 --YDDGV---TYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLSTIMNLG 135
>gi|159126152|gb|EDP51268.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus A1163]
Length = 626
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 447 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 505
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 506 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 565
Query: 476 YELDREKELL 485
+E R K+ L
Sbjct: 566 FERSRIKDFL 575
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 106
Q+ V +T+ + DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTS-----YDDGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|336468974|gb|EGO57137.1| hypothetical protein NEUTE1DRAFT_130844 [Neurospora tetrasperma
FGSC 2508]
gi|350288719|gb|EGZ69944.1| RNA polymerase III subunit C3 [Neurospora tetrasperma FGSC 2509]
Length = 624
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 141/360 (39%), Gaps = 64/360 (17%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF----- 132
+Y V + + VR K L ++ + +++Q LL G+ + +
Sbjct: 71 ANSGEAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQTRISDLVAAYQA 130
Query: 133 -------DRAKSSEKEGNLV--DLDSLRETLVKLV--------------TAHYVERCPAS 169
D A ++K+ LV L L +L+ +AH +E+
Sbjct: 131 KINEVNNDDAWLNDKKPELVIKSKAQLNSVLCRLIEAELIDVIHSKTFQSAHEIEKQVHR 190
Query: 170 EPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEK 229
E + + P KG+K+ + EQ+V E + ++ + + G
Sbjct: 191 E-----VMDVYFPNGIKGTKAKVE------FEQRVAEGLRKVREESKTLKRKLAQNGGAS 239
Query: 230 EK------NSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVR 283
++ N N P E+ D D + V+ R N+E I LR + + +V
Sbjct: 240 KRRKLAVGNETNGAPEEEEDLD-------PALDPRQVI-RINYEKCIVELRSRRLVQYVN 291
Query: 284 AHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASL 343
L + V +L+ + K + S PL + EE + N LD V+ S+
Sbjct: 292 ETLGETTGYVYGQLLKQLT---KNISRCRSDPLMDTLTPEEKVTPSVTTNEILDKVKTSI 348
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 343 LVQLGELSFV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 401
L+ G FV D +++DF+ ++E + E++S++ + GR R+ R+L G+L
Sbjct: 429 LLAEGHPGFVRHCGEDEWTVDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLG 488
Query: 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHV 459
E + + + K D + + ++ G+ +++ + LW + + + +
Sbjct: 489 E-QALQSLSLMRKVDLQQKMLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSL 547
Query: 460 LDEMFHAALNLSLRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRI 508
+ + + ++ + ++K++L+L KRT G +D R+ + K
Sbjct: 548 IAKCYATMVHCLQVLEVRRQKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDER 605
Query: 509 LLESSQMKLDDAILLFHDF 527
LL + M++DD + L DF
Sbjct: 606 LLMAEMMRIDDTLALLQDF 624
>gi|451995146|gb|EMD87615.1| hypothetical protein COCHEDRAFT_1184836 [Cochliobolus
heterostrophus C5]
Length = 679
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + F
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
G A T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 73 GSDAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
>gi|367017192|ref|XP_003683094.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
gi|359750758|emb|CCE93883.1| hypothetical protein TDEL_0H00240 [Torulaspora delbrueckii]
Length = 632
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVK-RYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGF 75
H G+ + + + LL KG L+ ++ R +L ++ L+ LIQ CV+ + P G
Sbjct: 48 HLGERASSIIDVLLSKGRLSVFEIQERLPDLDTRSIRTTLVSLIQLRCVKYWEETTPTG- 106
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ--CVELVQGLLEHGRLTLKQMFD 133
+ T Y D +L + + +SQ+F Q +++Q +L G +T +
Sbjct: 107 ----RTITYYYANEDGLLLFLYSGLIIDEVSQQFQQSKLAAQIMQNILTLGSVTTEDFLQ 162
Query: 134 RAKSSEKE 141
K S+ E
Sbjct: 163 NCKDSKNE 170
>gi|46107524|ref|XP_380821.1| hypothetical protein FG00645.1 [Gibberella zeae PH-1]
Length = 635
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+++DF++++ + E+++++ + +GR R+ R+L + G+L E + ++K D
Sbjct: 457 WTVDFDRLVGKLRETELDAIIEQSHGRHGLRLTRILREKGKLDEK-MLPAAALMKKGDVQ 515
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVSY 476
+ + G + ++++ +R + W +++ LD+++ A L +
Sbjct: 516 GKMLAMQMAGIVDVQEVPKDSSRLANRTLFFWYFDKERAQTQALDDIYKAMLRCLQTLEV 575
Query: 477 ELDREKELLNLPADK---------RTGPLQDRYNRIRKVRILLESSQMKLDDAILLFHDF 527
E +E+ +L+ K T ++YN +V+ L M+LD+ + + D+
Sbjct: 576 ERHKERNILSFVERKDVQGKEEEVMTAEHYNKYNTHLEVQNKLLGQLMRLDELVSVLRDY 635
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 7 TKHAVHV----ITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQN 62
TKHA + + + G+L +++ LL KG T + ++T L+ ++N L VLIQQN
Sbjct: 4 TKHAAELCALLVNDLHGELPSRILNALLTKGRSTIAQLIQHTSLTLRYLRNGLAVLIQQN 63
Query: 63 CVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE 122
+ T T Y D + +R K L ++ ++ EL Q L++
Sbjct: 64 LIYHHTDTN-------NNNVTNYQANADACYNLIRSGKILDVIETQYGTAERELTQTLIQ 116
Query: 123 --HGRLT-LKQMF 132
H R+ L Q F
Sbjct: 117 LGHARIADLSQAF 129
>gi|344233379|gb|EGV65251.1| hypothetical protein CANTEDRAFT_102848 [Candida tenuis ATCC 10573]
Length = 590
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
V NH G + A V L+ G LT +++ + T+ + VK +L+ LIQ NCV
Sbjct: 22 VTKNHLGSVAAVVVSTLISHGRLTAKDISKKTKFPLKTVKTSLVSLIQLNCVLY------ 75
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF 132
+ +G + + Y +L + + + + + +D + ++Q L++ G + ++ +
Sbjct: 76 --WQEGERVD--YTFHEQGLLVLLHSGQIINHIRETYDHESAAIIQNLIQIGSIRVEDLV 131
Query: 133 DRA 135
A
Sbjct: 132 KDA 134
>gi|344304130|gb|EGW34379.1| DNA-directed RNA polymerase III subunit RPC3 [Spathaspora
passalidarum NRRL Y-27907]
Length = 602
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
H G++ + + CL+ G LT + + + T++ + +K+AL+ L+Q NCV +T++
Sbjct: 26 HLGEVASCIISCLISNGRLTSKELSQRTKIPLKSIKSALVSLVQLNCVYYWTSK------ 79
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRL 126
D K Y + +L + + + + + E++Q +L +G +
Sbjct: 80 DSAKT-VHYSLNESGLLAFIHSGDIIQHIKERYGDDAAEIIQNVLINGHV 128
>gi|70984834|ref|XP_747923.1| DNA directed RNA polymerase III subunit Rpc82 [Aspergillus
fumigatus Af293]
gi|74668051|sp|Q4WEU2.1|RPC3_ASPFU RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|66845551|gb|EAL85885.1| DNA directed RNA polymerase III subunit Rpc82, putative
[Aspergillus fumigatus Af293]
Length = 629
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + + + KD
Sbjct: 450 TWTVEFRHLARKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISLLPFKDL 508
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L + G++ ++++ RQ LW + + VL + + A R+
Sbjct: 509 RQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWYYDPDRICNSVLQDTYKAMSRCLQRLR 568
Query: 476 YELDREKELL 485
+E R K+ L
Sbjct: 569 FERSRIKDFL 578
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ 60
M +++ + ++ +FG+L ++ L R L +K Y+EL + Q+ AL +IQ
Sbjct: 1 MTSQFAAELCELLVEENFGELFGRIFATLSRYDRLNLPRLKAYSELPNRQLLPALAAMIQ 60
Query: 61 QNCVQAFTTEQPDGFADGP---KANTQ---YVVLFDNILHRV--RFAKF-LTILS 106
Q+ V +T+ + DG +AN Q Y+V IL V R K+ T+LS
Sbjct: 61 QHLVYHYTS-----YDDGVTYYEANMQSAYYLVRSGKILEFVEERLGKYAATVLS 110
>gi|303319265|ref|XP_003069632.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240109318|gb|EER27487.1| RNA polymerase III subunit RPC82 family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 653
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QVK+ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVKHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T DG T Y + + + VR K + ++ + +V
Sbjct: 59 QQHLV-FHCTSLDDGI-------TYYESNWRSAYNLVRSGKIIQLVEERLGNHAASIVST 110
Query: 120 LLEHG 124
LL G
Sbjct: 111 LLALG 115
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 474 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 532
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 533 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 592
Query: 476 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 526
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 593 VEREKLKFLLEKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 652
Query: 527 F 527
+
Sbjct: 653 Y 653
>gi|452986792|gb|EME86548.1| hypothetical protein MYCFIDRAFT_43158, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 602
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQP 72
+I G L +++ L G LTR +++ T + Q+++AL VLIQQ+ + TTE+
Sbjct: 13 LIEESCGHLSSQIFLALADNGRLTRWQLQQTTRIPARQLRHALAVLIQQHLLLHNTTEEG 72
Query: 73 DGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLE--HGRLT-LK 129
F Y V + N + +R +++ + + ++V L++ H R+ L
Sbjct: 73 LTF---------YHVDWRNAYYTLRSNSIISLTRDRYGESAAKIVTSLIQLGHARVGDLA 123
Query: 130 QMFDRAKSSEKE 141
Q FD +++++
Sbjct: 124 QAFDFTSTTKRD 135
>gi|451845886|gb|EMD59197.1| hypothetical protein COCSADRAFT_127652 [Cochliobolus sativus
ND90Pr]
Length = 679
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G+L ++V L R G + ++ R + L+ Q+K L++L+QQ+ + F
Sbjct: 23 YGELASRVYSVLARHGRQSLASIARASYLNARQIKYGLVILLQQHLI----------FHS 72
Query: 78 GPKAN-TQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHG 124
G A T Y + + N VRF K ++ F ++ ++ LL G
Sbjct: 73 GNDAPLTYYEIDWQNSYAIVRFGKVTKLVEDRFGKKAANVMSNLLALG 120
>gi|307202972|gb|EFN82188.1| DNA-directed RNA polymerase III subunit RPC3 [Harpegnathos
saltator]
Length = 260
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 353 DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV 412
D+S YS++ + ++++V++++G A RIFRL+ ++ +E +++ +
Sbjct: 57 DSSGGQYSVNMKNAFNQLAWATLDNIVTEKFGSKAARIFRLI-RNKTTIELEQLQQVAMM 115
Query: 413 EKKDAPKILYKLWKDGYLL---MEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALN 469
+ A + Y L ++GY+ M++ V+ F ++ ++ + + + +HA N
Sbjct: 116 PTRQAKLLTYTLAQEGYIQVQEMKRSGVSAGPMKTFFMFYIDLNQVVQMQIGHCYHALHN 175
Query: 470 LSLRVSYELDREKELLN 486
+ R +E K +++
Sbjct: 176 IIQRRDHESTSNKRMID 192
>gi|119182545|ref|XP_001242401.1| hypothetical protein CIMG_06297 [Coccidioides immitis RS]
gi|121754656|sp|Q1DTR6.1|RPC3_COCIM RecName: Full=DNA-directed RNA polymerase III subunit RPC-3;
Short=RNA polymerase III subunit C3
gi|392865296|gb|EAS31079.2| DNA-directed RNA polymerase III subunit RPC-3 [Coccidioides immitis
RS]
Length = 653
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L A + LL G PL R + + T LS QV++ L VL+
Sbjct: 1 MSQYAAELCKLLITDNFGELYALIFIYLLNHGRQPLPR--IVQNTHLSPRQVRHGLAVLV 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ V T DG T Y + + + VR K + ++ + + +V
Sbjct: 59 QQHLV-FHCTSLDDGI-------TYYESNWRSAYNLVRSGKIIQLVEERLGNRAASIVST 110
Query: 120 LLEHG 124
LL G
Sbjct: 111 LLALG 115
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 474 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 532
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 533 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 592
Query: 476 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 526
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 593 VEREKLKFLLEKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 652
Query: 527 F 527
+
Sbjct: 653 Y 653
>gi|296415506|ref|XP_002837427.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633299|emb|CAZ81618.1| unnamed protein product [Tuber melanosporum]
Length = 643
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+SI+++++ ++ ++ E+E VV + +G R+ R++ G+ LE +I+ +++K+
Sbjct: 465 WSINYKELGKLMRHIELEKVVEETFGEMGLRLLRIIKDKGK-LEEKQIASIALLKQKEIR 523
Query: 419 KILYKLWKDGYLLMEKLVVTGARQ--SQFLLW 448
IL L + GYL ++++ T Q + LW
Sbjct: 524 SILTGLQESGYLHLQEVPKTSIPQISRTYFLW 555
>gi|261194549|ref|XP_002623679.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
gi|239588217|gb|EEQ70860.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis
SLH14081]
Length = 664
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ + +T+ DG T Y + + VR + L + ++ + +++
Sbjct: 59 QQHLIYHYTSLD-DGI-------TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLAT 110
Query: 120 L--LEHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 150
+ L H R+ TL ++ +A S ++G L+ +
Sbjct: 111 ILYLGHARISYLETLPELRPQATSKARKGATNGLNGV 147
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 485 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 543
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 544 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 603
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 604 VERNKLKFFL 613
>gi|327357371|gb|EGE86228.1| RNA polymerase III subunit RPC82 [Ajellomyces dermatitidis ATCC
18188]
Length = 664
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLI 59
+++Y + +IT++FG+L + + LL + PL R + + T LS QV++ L VLI
Sbjct: 1 MSQYAAELCKLLITDNFGELYSLIFSYLLYHDRQPLPR--IVQNTRLSPRQVRHGLAVLI 58
Query: 60 QQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQG 119
QQ+ + +T+ DG T Y + + VR + L + ++ + +++
Sbjct: 59 QQHLIYHYTSLD-DGI-------TYYEASWRTAYNLVRSGRILQFVEKKLGEYAGKVLAT 110
Query: 120 L--LEHGRL----TLKQMFDRAKSSEKEGNLVDLDSL 150
+ L H R+ TL ++ +A S ++G L+ +
Sbjct: 111 ILYLGHARISYLETLPELRPQATSKARKGATNGLNGV 147
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 485 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLTAKGKLDE-KRLQEISLMASKEL 543
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 544 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 603
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 604 VERNKLKFFL 613
>gi|85078174|ref|XP_956123.1| hypothetical protein NCU03560 [Neurospora crassa OR74A]
gi|74622578|sp|Q8WZW7.1|RPC3_NEUCR RecName: Full=DNA-directed RNA polymerase III subunit rpc-3;
Short=RNA polymerase III subunit C3
gi|18376039|emb|CAD21045.1| related to DNA-directed RNA polymerase III chain RPC82 [Neurospora
crassa]
gi|28917171|gb|EAA26887.1| predicted protein [Neurospora crassa OR74A]
Length = 624
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFAD 77
+G L A+V L ++G L+ + + ++++LS QVKN L VL Q N + F + D
Sbjct: 19 YGQLPARVYATLFQRGKLSVRLISQFSKLSARQVKNGLCVLQQHNLL--FYS------VD 70
Query: 78 GPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGR 125
+Y V + + VR K L ++ + +++Q LL G+
Sbjct: 71 ANSGEAEYSVNHEYAYNLVRTGKILEMVDNSYGPAGRDVMQNLLLLGQ 118
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 343 LVQLGELSFV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLL 401
L+ G FV D +++DF+ ++E + E++S++ + GR R+ R+L G+L
Sbjct: 429 LLAEGHPGFVRHCGEDEWTVDFKPLMENLRATELDSIIEQTSGRQGLRLIRILRTKGKLG 488
Query: 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKVNRQILWKHV 459
E + + + K D + + ++ G+ +++ + LW + + + +
Sbjct: 489 E-QALQSLSLMRKVDLQQKMLEMRLVGFAHTQEVPRDNKADPKKSIFLWYCDTEQAYSSL 547
Query: 460 LDEMFHAALNLSLRVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRI 508
+ + + ++ + ++K++L+L KRT G +D R+ + K
Sbjct: 548 IAKCYATMVHCLQVLEVRRQKDKDVLSLA--KRTNVKGKEKDMMRDESYARFAKFLKDER 605
Query: 509 LLESSQMKLDDAILLFHDF 527
LL + M++DD + L D+
Sbjct: 606 LLMAEMMRIDDTLALLQDY 624
>gi|449300307|gb|EMC96319.1| hypothetical protein BAUCODRAFT_33657 [Baudoinia compniacensis UAMH
10762]
Length = 652
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
S +SI+F + E+++ +S RY + R+ R+L G+ LE I+ +
Sbjct: 461 SHGGWSINFPALTSTLITSELDTTLSSRYSKHHLRLTRMLRSIGK-LEEKSIASLAMMRI 519
Query: 415 KDAPKILYKLWKDGYLLMEKLVVTGARQ--SQFLLWKVNRQILWKHVLDEMFHAALNLSL 472
KD ++L +L G + +++L G RQ + LW + + K V++ + A
Sbjct: 520 KDVRELLTELQYAGIVDVQELPKDGRRQPSNTIFLWYCDEDRVRKLVVEWTYKAMARCLQ 579
Query: 473 RVSYELDREK 482
R+ E +REK
Sbjct: 580 RL--ETEREK 587
>gi|367054060|ref|XP_003657408.1| hypothetical protein THITE_2123067 [Thielavia terrestris NRRL 8126]
gi|347004674|gb|AEO71072.1| hypothetical protein THITE_2123067 [Thielavia terrestris NRRL 8126]
Length = 631
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Query: 355 SSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEK 414
D +++DF +++ + E++SV+ + GR R+ R+L G+L E + + + K
Sbjct: 449 GPDEWTVDFIPLMKALREAELDSVIEQTSGRQGLRLVRILRAKGKLDEK-ALPNVALMRK 507
Query: 415 KDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNRQILWKHVLDEMFHAALNLSL 472
+ + + +L G++ ++++ V + F LW + + +LD + ++ +
Sbjct: 508 PELQQKMLELQTAGFVDVQEVPRDVKADVKKSFFLWFCDVDRSLERLLDTSYKTMVH-CI 566
Query: 473 RVSYELDREKELLNLPADKRT---GPLQD--------RYNRIRKVRILLESSQMKLDDAI 521
+V L REKE L KRT G +D RY R + L + ++DD +
Sbjct: 567 QVLEAL-REKERDVLETTKRTDVRGREKDTMRKEYYERYARFLECERKLFAQVSRVDDLV 625
Query: 522 LLFHDF 527
+ DF
Sbjct: 626 AVLRDF 631
>gi|159111769|ref|XP_001706115.1| Hypothetical protein GL50803_4155 [Giardia lamblia ATCC 50803]
gi|157434208|gb|EDO78441.1| hypothetical protein GL50803_4155 [Giardia lamblia ATCC 50803]
Length = 487
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 231 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
K + P K H + L+ V+D Y + E I + + D+V D
Sbjct: 188 KGPESTEPPRKHSHGLHSLESDNVSDSGES-YCVSVEQLIALFQEEELADYVCTVYDRDM 246
Query: 291 ANVLSAMLQATSS-----------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGRNM 334
V A L ++S A+ + T++ +L +++ ++ ++ G N
Sbjct: 247 GTVFRAALFISNSFQALGFCPFSPADVRPSTRS---FNLEQLHDALMNAQYSLNATGSNF 303
Query: 335 TLDHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRI 390
TL AS+++L + + +SD Y +D + IE Q + +V++R+G A R+
Sbjct: 304 TLSFC-ASVLKLYVSEPKAMMHMTSDGQYIVDIDAAIERMQMAVLLRIVAERHGPMARRM 362
Query: 391 FRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLW 448
F ++ G ++E ++ + + A +L L +GYL + L + ++ + L+
Sbjct: 363 FNIIRARG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITMLSTSAEPKVETSYFLY 421
Query: 449 KVN 451
N
Sbjct: 422 STN 424
>gi|452845393|gb|EME47326.1| hypothetical protein DOTSEDRAFT_69302 [Dothistroma septosporum
NZE10]
Length = 648
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 359 YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAP 418
+ + F + + +++S VS RYG+ A RI RLL + GR LE +++ + KD
Sbjct: 466 WKVHFPSLTDNLIQADIDSTVSARYGKVAVRIVRLLRERGR-LEEKQVAAFVMMRIKDVR 524
Query: 419 KILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKH 458
+L L G++ +++ +RQ ++ LW H
Sbjct: 525 AVLTILQYAGFVESQEIPKDASRQPSRAVY------LWFH 558
>gi|116200165|ref|XP_001225894.1| hypothetical protein CHGG_08238 [Chaetomium globosum CBS 148.51]
gi|121779992|sp|Q2GUW6.1|RPC3_CHAGB RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|88179517|gb|EAQ86985.1| hypothetical protein CHGG_08238 [Chaetomium globosum CBS 148.51]
Length = 628
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 89/204 (43%), Gaps = 15/204 (7%)
Query: 338 HVRASLVQLGELS--FV-DASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
+R L+ L E + FV + +++DF +++ + E++SV+ + GR R+ R+L
Sbjct: 426 QLRQHLLMLAESTQHFVRHCGPNEWTVDFVPVMKSLREAELDSVIERTCGRQGLRLVRIL 485
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV--VTGARQSQFLLWKVNR 452
G+L E + + + K + + + ++ G++ ++++ + + F LW +
Sbjct: 486 RAKGKLDEK-ALPNVALMRKPELQQKMLEMQTAGFVSVQEVPRDLKADVKKSFFLWFCDM 544
Query: 453 QILWKHVLD----EMFHA-----ALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRI 503
+LD M H AL R E + ++ D +RY+R
Sbjct: 545 DSSLSRLLDTGYVTMVHCLQVLEALRRKERDVLETTKRTDVRGREKDTMRKSYYERYSRF 604
Query: 504 RKVRILLESSQMKLDDAILLFHDF 527
+ L + M++DD + + DF
Sbjct: 605 LESERKLFAQVMRVDDLVSVLRDF 628
>gi|255722193|ref|XP_002546031.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
gi|240136520|gb|EER36073.1| hypothetical protein CTRG_00812 [Candida tropicalis MYA-3404]
Length = 584
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFA 76
H G++ + + L+ G LT + + TE+ + VK AL+ LIQ NC+ + + +
Sbjct: 26 HLGEIASCIISRLISNGRLTAKEISTRTEIPIKNVKTALVSLIQLNCIYFWEEKDKKVYY 85
Query: 77 DGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMF---- 132
+ + +I++ ++ +E+ + E+VQ +L +G + +
Sbjct: 86 SLKETGLLLFLYSGDIINHIK---------KEYGEDEAEIVQNILTYGHVKVNDYLSQFK 136
Query: 133 -DRAKSSEKEGNLVDL 147
D++K ++E + L
Sbjct: 137 DDKSKQIDEENRFLRL 152
>gi|156099137|ref|XP_001615571.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148804445|gb|EDL45844.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1023
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR-LLSKSGRLLETDKISDTTFVEKKD 416
+Y+ DF I I +N+ +++ G A RI+ L+S + + + IS+ + D
Sbjct: 815 TYAADFCNIKNIYKNKITTNIIKNMNGSGALRIWNFLISSPEQKVNDEVISENVLIPLND 874
Query: 417 APKILYKLWKDGYLLMEKLVVTGARQSQF---LLWKVNRQILWKHVLDEMFHAALNLSLR 473
K LY L GY+ + + ++ L + N + + +F A N+ +R
Sbjct: 875 VRKKLYNLLYHGYIKCHECNNSNVNKTYIKHSLSFSTNVYYTANKIKENLFTIAKNIYIR 934
Query: 474 VSYELDREKELLN------------LPADKRTG 494
+E + L N LPA+ RTG
Sbjct: 935 KLHENNEINTLHNKSNICANDVGKELPAELRTG 967
>gi|149246041|ref|XP_001527490.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|206558157|sp|A5DRM4.1|RPC3_LODEL RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|146447444|gb|EDK41832.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 610
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ-PDGF 75
H G++ + + LL G L + + T+L+ + +K+A++ LIQ NC+ + ++ P F
Sbjct: 26 HLGEVASVIITTLLASGRLNIKQISVKTKLAIKSIKSAIVSLIQLNCLYYWQDDKNPTIF 85
Query: 76 ADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTL 128
Y V + V L ++QE+ + E++Q ++ +G L L
Sbjct: 86 --------YYSVNETGLKTLVYSGDILNHITQEYGDEEAEIIQNIIMNGHLKL 130
>gi|298707346|emb|CBJ29990.1| hypothetical protein Esi_0170_0035 [Ectocarpus siliculosus]
Length = 301
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 24/140 (17%)
Query: 13 VITNHFGDLVAKVCECLLRK-----GPLTR-----QNV-------KRYTELSDEQVKNAL 55
VI + G +V+ V E L+R LTR Q + K T+++ VK +L
Sbjct: 25 VIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESL 84
Query: 56 LVLIQQNCV-QAFTTE----QPDGFADGPKANTQ--YVVLFDNILHRVRFAKFLTILSQE 108
L++ Q N V A TE + + G N + Y +L +L R R +F + ++
Sbjct: 85 LIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAART 144
Query: 109 FDQQCVELVQGLLEHGRLTL 128
F + +V L HGR TL
Sbjct: 145 FSKVAGLVVDCFLRHGRRTL 164
>gi|401887553|gb|EJT51538.1| hypothetical protein A1Q1_07300 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699861|gb|EKD03055.1| hypothetical protein A1Q2_02657 [Trichosporon asahii var. asahii
CBS 8904]
Length = 507
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 84/464 (18%), Positives = 192/464 (41%), Gaps = 71/464 (15%)
Query: 51 VKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD 110
V +L++L+Q + V + G P Y L R+R+ + L + +EF
Sbjct: 27 VGASLIILLQHHLVGS-----TGGSRRNPPEEEMYEFDIIECLMRLRWGRMLALTEKEFG 81
Query: 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASE 170
++ + +G+LT++++ D + + SLR + ++ ++E P
Sbjct: 82 EE-------IFLYGKLTMEEIQDVLAEYDMSAS-----SLRRVVTLMLRRGFLE--PTCA 127
Query: 171 PLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKE 230
L M S++ ++ K+A I E + E M F + ++ +
Sbjct: 128 ELTMLRSDQIDRRYRELKKAA--IDE------------ITDERMDFRNPSRALKELKVPK 173
Query: 231 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
K+S++ G+ + + +D V RAN++ + +R++ I + A
Sbjct: 174 KSSSSALKGKSKGENWDVVD--------GVPLRANYDKYNVLIRNEMIIQAATDRWNAAA 225
Query: 291 ANVLSAMLQATSSAEKKVK-TKNSVPLSLSSIYEEV-----------IKSEAGRNMTLDH 338
V+ A L A+ ++ + + SV ++++ I + + + +N+
Sbjct: 226 GEVMRAALAASIDSQSDPRELRTSVAVNVTQIVDRIPQHAYKLLMAGMVGTGSKNIPEIT 285
Query: 339 VRASLVQLGE-----------LSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDA 387
+ V G+ L+ D +S ++ ++ E I ++ + +V +R A
Sbjct: 286 RQYLAVMSGDDLASGGGGGRFLTHSDGTSPTFFVELEAICTALKHSLLTELVRERIDEKA 345
Query: 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQ----- 442
R+ +++++ ET + D + ++A IL +L K + ++++ T A+
Sbjct: 346 ARVLAVIAEAKFASET-MVRDCAMIPLREARHILSELQKLSLIDIQEVPKTAAKGRNMFP 404
Query: 443 -SQFLLWKVNRQILWKHVLDEMFHAALNLSLRVSYELDREKELL 485
+ F LW ++ + + +L ++ A N+ R +EL++ LL
Sbjct: 405 GNDFHLWSIDLRKAYGFLLSGVYKTAANVMQRRQHELEKRSVLL 448
>gi|401414336|ref|XP_003871666.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487884|emb|CBZ23129.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 158
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 335 TLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLL 394
T+ RA LV+ + S+ Y+ID + + Q E VV RYG I +LL
Sbjct: 44 TMPSTRALLVK------PHSQSNFYAIDHVTAVHLLQEAVCERVVYSRYGVLGVCIMKLL 97
Query: 395 SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGA 440
+ LE +++ + ++L++++KDG+LL +++ T A
Sbjct: 98 LQH-HFLEERTLAEQSVATYVKVREVLHQMFKDGFLLQQEVPRTSA 142
>gi|320040943|gb|EFW22876.1| DNA-directed RNA polymerase III subunit RPC-3 [Coccidioides
posadasii str. Silveira]
Length = 603
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
++++++ + + ++ E+E ++ R+G A RI R+L+ G+L E ++ + + + KD
Sbjct: 424 TWAVEYRHLAKKLRHLELERLIEARFGGFAVRIVRVLAAKGKLDEK-RLQEISLMASKDL 482
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
+IL ++ G++ ++++ RQ LW + + V+++ + + R+
Sbjct: 483 RQILGQMASAGFVELQEVPRDAQRQPSRTMYLWFYDPDRVRFMVIEDTYKSMSRCLQRIR 542
Query: 476 YELDREKELLNLPADKRTGPLQDRY---------NRIRKVRILLESSQMKLDDAILLFHD 526
E ++ K LL +DRY R LL +LD+ + + D
Sbjct: 543 VEREKLKFLLQKTERSDVKGNEDRYLSAAELQTLKEWRDTEKLLLGEVARLDELVAVLRD 602
Query: 527 F 527
+
Sbjct: 603 Y 603
>gi|115432954|ref|XP_001216614.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|121735401|sp|Q0CE91.1|RPC3_ASPTN RecName: Full=DNA-directed RNA polymerase III subunit rpc3;
Short=RNA polymerase III subunit C3
gi|114189466|gb|EAU31166.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 650
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQ 61
+++Y + ++ ++FG+L + L+R LT ++ Y++L D Q++ L ++QQ
Sbjct: 1 MSQYIAELCTLLVEDNFGELFGHIFATLIRYDRLTLPRLRLYSKLPDAQLRRGLAAMVQQ 60
Query: 62 NCVQAFTT 69
+ V +T+
Sbjct: 61 HLVYHYTS 68
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 352 VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTF 411
V A+ S++++F + ++ E+E ++ RYG A R+ R+L G+L E ++ + +
Sbjct: 465 VVANLPSWTVEFRSLACKLRHLELERMIEARYGDVALRVVRVLHAKGKLDEK-RLQEISL 523
Query: 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALN 469
+ + ++L + G++ ++++ RQ LW + +L++ + +
Sbjct: 524 LPFRVLRQVLASMQAGGFVDLQEVPRDAQRQPSRTIYLWFYDPDRTRASILEDTYKSMSR 583
Query: 470 LSLRVSYELDREKELL 485
R+ +E +R KE L
Sbjct: 584 CLQRLRFERNRLKEFL 599
>gi|308160777|gb|EFO63250.1| Hypothetical protein GLP15_3091 [Giardia lamblia P15]
Length = 487
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 24/241 (9%)
Query: 231 KNSNNVTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGA 290
K S + P K + + L+ ++D Y + E I + + D+V D
Sbjct: 188 KGSESGEPPRKHSYGLHSLEPDNISDSGES-YCVSVEQLIALFQEEELADYVCTVYDRDM 246
Query: 291 ANVLSAMLQATSS---------AEKKVKTKNSVPLSLSSIYEEVIKSE-----AGRNMTL 336
V A L ++S + V+ N+ +L ++ +I ++ G N TL
Sbjct: 247 GTVFRAALFISNSFQALGFCPFSPADVR-PNTRSFNLEQLHGALINTQYSLNATGSNFTL 305
Query: 337 DHVRASLVQLG---ELSFVDASSDS-YSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFR 392
AS++ L + V +SD Y +D + IE Q + +V++R+G A R+F
Sbjct: 306 SFC-ASVLNLYVSEPKAMVHMTSDGQYIVDIDTAIERMQMAVLLRIVAERHGPMARRMFN 364
Query: 393 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGAR--QSQFLLWKV 450
++ G ++E ++ + + A +L L +GYL + L + ++ + L+ +
Sbjct: 365 IIRARG-MMEASVVAAEGMIPRSQAVSLLTTLCTEGYLQITMLSNSAEPKVETSYFLYSI 423
Query: 451 N 451
N
Sbjct: 424 N 424
>gi|325094884|gb|EGC48194.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus H88]
Length = 641
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 TWTVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|240276950|gb|EER40460.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus H143]
Length = 641
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 TWTVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|225554605|gb|EEH02901.1| RNA polymerase III subunit Rpc82 [Ajellomyces capsulatus G186AR]
Length = 641
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 462 AWAVEFRHLARRLRHLEIERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 520
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 521 RQVLARMEAAGFVDLQEVPRDAQRQPSRTMYLWFFDPDRVARMVLEDTYKCMSRCLQRIG 580
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 581 VERNKLKLFL 590
>gi|444316394|ref|XP_004178854.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
gi|387511894|emb|CCH59335.1| hypothetical protein TBLA_0B05000 [Tetrapisispora blattae CBS 6284]
Length = 650
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
++ H G+ V E L+ KG LT R+ R + + +K+ L+ LIQ CV+ T
Sbjct: 45 LVNTHIGERAKLVIELLIDKGRLTVREIYDRLNQFRPKVIKSILVSLIQLRCVRYHTERD 104
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFDQQ-CVELVQGLLEHGRLTLKQ 130
G K+NT Y + L + L + +F+ ++VQ +L G LT
Sbjct: 105 FKG-----KSNTYYYFNEEGPLLWLYSGLILEEIDLQFNSTIATQIVQNILSLGSLTPN- 158
Query: 131 MFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166
D + + N+ L LVKLV + ++ R
Sbjct: 159 --DLQSITTNQKNITK-SKLSTVLVKLVESGFLVRV 191
>gi|50303501|ref|XP_451692.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74607505|sp|Q6CWJ7.1|RPC3_KLULA RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|49640824|emb|CAH02085.1| KLLA0B03542p [Kluyveromyces lactis]
Length = 657
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 16 NHFGDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDG 74
+H G+ + V L+ KG L+ + + + ELS +K L+ LIQ CVQ G
Sbjct: 59 SHLGERASTVLSVLVNKGRLSTREIHSFIPELSLSSIKTVLVSLIQLRCVQYLEETSLSG 118
Query: 75 FADGPKANTQYVVLFDNILHRVRFA-----KFLTILSQEFDQQCVELVQGLLEH----GR 125
T Y + L + +A + + +Q+ +Q V + Q ++ + G
Sbjct: 119 ------RKTLYYYFNEEGLFLMLYAGDISDRIVQYFNQDEEQHLVNIAQQIIHNVLALGS 172
Query: 126 LTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163
LT+K +SE N D+ ++ + V+L ++
Sbjct: 173 LTVKDYL----ASESNSNDTDIFNIHQAFVRLADLEFL 206
>gi|374107793|gb|AEY96700.1| FAEL282Wp [Ashbya gossypii FDAG1]
Length = 636
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRL 126
G + T Y D + + + +F+ + ++VQ +L G L
Sbjct: 100 VSG-----RKITYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSL 154
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
T K S V ++ + VKLV ++ P S MP+++
Sbjct: 155 TTKDYMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|45190324|ref|NP_984578.1| AEL282Wp [Ashbya gossypii ATCC 10895]
gi|74693899|sp|Q758N7.1|RPC3_ASHGO RecName: Full=DNA-directed RNA polymerase III subunit RPC3;
Short=RNA polymerase III subunit C3
gi|44983220|gb|AAS52402.1| AEL282Wp [Ashbya gossypii ATCC 10895]
Length = 636
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 19/172 (11%)
Query: 13 VITNHFGDLVAKVCECLLRKGPLT-RQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQ 71
V +H G+ +V E LL KG L+ + V EL + V+ L+ LIQ CVQ
Sbjct: 40 VARSHLGERAGRVIELLLNKGRLSVSELVHLAPELGSKSVRTVLVSLIQLRCVQYLEETT 99
Query: 72 PDGFADGPKANTQYVVLFDNILHRVRFAKFLTILSQEFD-----QQCVELVQGLLEHGRL 126
G + T Y D + + + +F+ + ++VQ +L G L
Sbjct: 100 VSG-----RKITYYYFNEDGFQLMLYAGDIVAAVESQFEADDAKEIAAQIVQNVLALGSL 154
Query: 127 TLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPASEPLLMPISE 178
T K S V ++ + VKLV ++ P S MP+++
Sbjct: 155 TTKDYMQSLASD------VSVNDVASMFVKLVELGFL--VPLSNVHYMPLAD 198
>gi|239613503|gb|EEQ90490.1| DNA-directed RNA polymerase III subunit rpc3 [Ajellomyces
dermatitidis ER-3]
Length = 645
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 358 SYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDA 417
+++++F + ++ E+E ++ R+G A R+ R+L+ G+L E ++ + + + K+
Sbjct: 466 TWAVEFRHLARRLRHLELERIIESRFGTIAVRVIRVLAAKGKLDE-KRLQEISLMASKEL 524
Query: 418 PKILYKLWKDGYLLMEKLVVTGARQSQ--FLLWKVNRQILWKHVLDEMFHAALNLSLRVS 475
++L ++ G++ ++++ RQ LW + + + VL++ + R+
Sbjct: 525 RQVLARMETAGFVDLQEVPRDAQRQPSRTMYLWFFDADRVARMVLEDTYKCMSRCLQRIG 584
Query: 476 YELDREKELL 485
E ++ K L
Sbjct: 585 VERNKLKFFL 594
>gi|210063897|gb|ACJ06624.1| putative DNA binding protein [Secale cereale]
Length = 55
Score = 38.5 bits (88), Expect = 7.9, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 330 AGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRD 386
G M++ ++ L+ +L + + Y+ D K++E +NEE+ES+V K+YG++
Sbjct: 2 GGAAMSIGQIKPVLL---DLQCTTSDGEEYNFDLSKMVEACRNEEIESLVKKKYGQE 55
>gi|114563838|ref|YP_751351.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella frigidimarina NCIMB 400]
gi|114335131|gb|ABI72513.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Shewanella frigidimarina NCIMB 400]
Length = 1451
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 29/156 (18%)
Query: 309 KTKNSVPL----SLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELSFVDASSDSYSIDFE 364
K KN++ L S IY+E + + N +L H S++ + E++F+ S Y I+ E
Sbjct: 349 KYKNNIYLVNDDSNIYIYDENVILKNIINTSLPHGPKSILLINEIAFIGTKSGLYVINIE 408
Query: 365 KIIEIAQNEEVESVVSKRYGRDAYRIF--------RLLSKSGRLLETDKISDTTFVEKKD 416
IE N ++ +VS +Y + +I+ ++LS +G + T++I+ D
Sbjct: 409 NGIERKINNDL--IVSIKYSKSENKIYSSNFKGEIQVLSPTGEI--TEEINTNFSYPIYD 464
Query: 417 APKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 452
KI KLW A Q+ LLW+ N
Sbjct: 465 MIKIGSKLWI-------------ASQAGLLLWENNN 487
>gi|210063891|gb|ACJ06621.1| putative DNA binding protein [Triticum monococcum]
gi|210063895|gb|ACJ06623.1| putative DNA binding protein [Triticum urartu]
Length = 56
Score = 38.5 bits (88), Expect = 9.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 334 MTLDHVRASLVQLGELSFVDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDA 387
MT+ ++ L+ +L + + ++ D K++E +NEE+ES+V K+YG++A
Sbjct: 6 MTIGDIKPVLL---DLQCTTSDGEEFTFDLRKMVEACRNEEIESLVKKKYGQEA 56
>gi|169597803|ref|XP_001792325.1| hypothetical protein SNOG_01692 [Phaeosphaeria nodorum SN15]
gi|160707592|gb|EAT91341.2| hypothetical protein SNOG_01692 [Phaeosphaeria nodorum SN15]
Length = 1009
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 354 ASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVE 413
A + I+FE+I + EVE+ +S R G ++ R L K G+L E + +
Sbjct: 474 AGFSQWQIEFEEIAKQLIQAEVENTISARKGALGVKLIRALRKKGKLDER-ATCNAMMMS 532
Query: 414 KKDAPKILYKLWKDGYLLME---KLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAALNL 470
D I+ L G++ + K+ A+ S L+W +RQ + +L + + + +
Sbjct: 533 ANDIRGIVNDLTVQGFVQTQEIPKVERREAKHSLHLVW-YDRQRAREKLLHDTYKGMVRI 591
Query: 471 SLRVSYELDREKELLN 486
R+++E ++ + LL+
Sbjct: 592 LQRIAFEREKVQPLLS 607
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,508,360,636
Number of Sequences: 23463169
Number of extensions: 295881696
Number of successful extensions: 914966
Number of sequences better than 100.0: 419
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 913599
Number of HSP's gapped (non-prelim): 797
length of query: 527
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 380
effective length of database: 8,910,109,524
effective search space: 3385841619120
effective search space used: 3385841619120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)