Query 009725
Match_columns 527
No_of_seqs 130 out of 280
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xub_A DNA-directed RNA polyme 100.0 1.8E-91 6.2E-96 758.3 41.2 489 2-527 1-526 (534)
2 2xub_A DNA-directed RNA polyme 99.3 9.9E-10 3.4E-14 118.6 27.7 278 9-396 90-463 (534)
3 1q1h_A TFE, transcription fact 98.2 2.9E-06 9.8E-11 71.6 7.4 103 374-478 7-110 (110)
4 1q1h_A TFE, transcription fact 96.3 0.0099 3.4E-07 49.4 7.4 83 8-94 6-89 (110)
5 2qlz_A Transcription factor PF 95.7 0.14 4.8E-06 48.6 13.4 134 20-166 12-211 (232)
6 1xmk_A Double-stranded RNA-spe 95.2 0.03 1E-06 43.8 5.5 56 388-452 14-70 (79)
7 2oqg_A Possible transcriptiona 95.2 0.34 1.2E-05 39.9 12.5 81 1-92 2-82 (114)
8 1r1u_A CZRA, repressor protein 95.1 0.13 4.6E-06 42.1 9.8 78 8-96 14-91 (106)
9 3pqk_A Biofilm growth-associat 94.6 0.27 9.3E-06 39.8 10.2 83 12-111 15-97 (102)
10 3jth_A Transcription activator 94.0 0.17 5.8E-06 40.7 7.6 65 19-94 22-86 (98)
11 2htj_A P fimbrial regulatory p 93.9 0.13 4.6E-06 39.9 6.6 44 23-66 3-46 (81)
12 3cuo_A Uncharacterized HTH-typ 93.6 0.28 9.6E-06 39.1 8.3 65 20-94 24-88 (99)
13 1u2w_A CADC repressor, cadmium 93.3 0.37 1.3E-05 40.6 8.9 69 19-97 41-109 (122)
14 1qbj_A Protein (double-strande 93.2 0.097 3.3E-06 41.1 4.5 45 388-433 13-60 (81)
15 2kko_A Possible transcriptiona 93.1 0.35 1.2E-05 39.8 8.2 74 9-93 14-87 (108)
16 3r0a_A Putative transcriptiona 93.0 0.38 1.3E-05 40.6 8.5 57 12-68 16-76 (123)
17 2nr3_A Hypothetical protein; A 92.8 1.9 6.5E-05 38.3 12.6 124 18-168 22-162 (183)
18 3r0a_A Putative transcriptiona 92.7 1.1 3.7E-05 37.8 10.9 74 375-451 14-91 (123)
19 1ku9_A Hypothetical protein MJ 92.5 1.1 3.9E-05 38.1 11.2 64 382-449 21-87 (152)
20 3bdd_A Regulatory protein MARR 92.5 2.6 8.9E-05 35.4 13.3 75 11-92 20-96 (142)
21 1r1t_A Transcriptional repress 92.2 0.92 3.1E-05 38.2 9.8 75 10-95 36-110 (122)
22 1oyi_A Double-stranded RNA-bin 92.1 0.076 2.6E-06 41.7 2.6 45 387-433 19-63 (82)
23 2lkp_A Transcriptional regulat 92.1 0.95 3.2E-05 37.6 9.8 80 2-92 14-93 (119)
24 2jsc_A Transcriptional regulat 92.0 0.23 7.9E-06 41.6 5.7 70 13-93 14-83 (118)
25 1ub9_A Hypothetical protein PH 91.8 0.85 2.9E-05 36.2 8.8 67 19-92 15-81 (100)
26 2d1h_A ST1889, 109AA long hypo 91.6 1.1 3.7E-05 36.0 9.4 48 19-66 20-68 (109)
27 1sfx_A Conserved hypothetical 91.5 1.7 5.8E-05 34.7 10.5 65 382-451 15-81 (109)
28 1qgp_A Protein (double strande 91.5 0.17 5.9E-06 39.2 4.0 45 388-433 17-64 (77)
29 2zkz_A Transcriptional repress 91.5 0.59 2E-05 37.7 7.5 66 20-96 27-92 (99)
30 1qgp_A Protein (double strande 91.5 0.36 1.2E-05 37.3 5.8 44 22-65 16-62 (77)
31 3f6o_A Probable transcriptiona 91.4 0.84 2.9E-05 38.0 8.7 71 13-94 11-81 (118)
32 1sfx_A Conserved hypothetical 91.1 2.1 7.1E-05 34.2 10.7 49 19-67 19-67 (109)
33 1t6s_A Conserved hypothetical 90.8 0.75 2.6E-05 40.9 8.0 139 292-453 10-155 (162)
34 1xmk_A Double-stranded RNA-spe 90.7 0.28 9.6E-06 38.2 4.5 46 20-65 11-57 (79)
35 3bz6_A UPF0502 protein pspto_2 90.7 2.8 9.6E-05 37.3 11.4 122 19-167 23-161 (183)
36 3f6v_A Possible transcriptiona 90.1 0.89 3.1E-05 39.9 7.9 65 19-94 57-121 (151)
37 1ldj_A Cullin homolog 1, CUL-1 89.7 1.7 5.8E-05 48.5 11.6 135 32-167 601-750 (760)
38 3boq_A Transcriptional regulat 89.6 5.5 0.00019 34.3 12.8 114 383-517 45-159 (160)
39 2hr3_A Probable transcriptiona 89.5 6.5 0.00022 33.2 13.0 62 23-91 38-100 (147)
40 2lnb_A Z-DNA-binding protein 1 89.4 0.35 1.2E-05 37.1 3.9 44 388-431 22-65 (80)
41 1sfu_A 34L protein; protein/Z- 88.9 0.17 5.8E-06 38.9 1.9 36 398-433 27-62 (75)
42 2fu4_A Ferric uptake regulatio 88.9 0.81 2.8E-05 35.4 6.0 48 20-67 17-71 (83)
43 1qbj_A Protein (double-strande 88.8 1.1 3.9E-05 34.9 6.7 45 21-65 11-58 (81)
44 3eyi_A Z-DNA-binding protein 1 88.8 0.51 1.7E-05 35.3 4.3 58 388-450 13-71 (72)
45 2vxz_A Pyrsv_GP04; viral prote 88.8 1.8 6.3E-05 37.5 8.4 93 22-138 13-107 (165)
46 1ku9_A Hypothetical protein MJ 88.6 2.3 7.9E-05 36.1 9.4 48 20-67 26-74 (152)
47 1oyi_A Double-stranded RNA-bin 88.4 0.67 2.3E-05 36.3 5.0 46 20-66 17-62 (82)
48 2pex_A Transcriptional regulat 88.3 2.2 7.7E-05 36.6 9.2 47 21-67 48-94 (153)
49 1z7u_A Hypothetical protein EF 88.3 6 0.0002 32.3 11.4 68 16-91 17-86 (112)
50 2hzt_A Putative HTH-type trans 87.9 1.5 5.1E-05 35.8 7.3 68 16-91 9-78 (107)
51 2l02_A Uncharacterized protein 87.8 0.82 2.8E-05 35.6 5.1 54 15-69 3-56 (82)
52 2d1h_A ST1889, 109AA long hypo 87.4 1.7 5.9E-05 34.7 7.4 66 385-452 21-87 (109)
53 2nnn_A Probable transcriptiona 87.4 3.9 0.00013 34.2 10.1 65 20-91 38-102 (140)
54 2eth_A Transcriptional regulat 87.3 5.9 0.0002 33.9 11.4 66 19-91 43-108 (154)
55 1jgs_A Multiple antibiotic res 87.3 4.1 0.00014 34.1 10.1 65 20-91 34-98 (138)
56 3bpv_A Transcriptional regulat 87.1 3.8 0.00013 34.2 9.7 48 20-67 29-76 (138)
57 3bja_A Transcriptional regulat 87.0 3.4 0.00012 34.5 9.4 65 20-91 33-97 (139)
58 2htj_A P fimbrial regulatory p 87.0 0.82 2.8E-05 35.3 4.9 44 388-432 3-46 (81)
59 3bro_A Transcriptional regulat 86.9 5 0.00017 33.6 10.5 49 20-68 34-84 (141)
60 3lmm_A Uncharacterized protein 86.9 0.96 3.3E-05 48.8 7.0 122 22-167 432-564 (583)
61 1lj9_A Transcriptional regulat 86.9 5.7 0.0002 33.4 10.9 65 20-91 29-93 (144)
62 1y0u_A Arsenical resistance op 86.7 1.6 5.5E-05 34.7 6.7 45 19-65 30-74 (96)
63 2xvc_A ESCRT-III, SSO0910; cel 86.5 0.77 2.6E-05 33.0 3.9 45 389-433 14-58 (59)
64 2fbi_A Probable transcriptiona 86.5 3.9 0.00013 34.3 9.5 49 20-68 36-84 (142)
65 1yyv_A Putative transcriptiona 86.5 5.6 0.00019 33.7 10.4 65 19-91 34-99 (131)
66 3tgn_A ADC operon repressor AD 86.4 2.8 9.6E-05 35.5 8.6 47 21-68 39-85 (146)
67 1xn7_A Hypothetical protein YH 86.4 1.2 4.1E-05 34.4 5.5 45 23-67 5-49 (78)
68 2fbh_A Transcriptional regulat 86.4 6.5 0.00022 33.0 11.0 65 20-91 37-102 (146)
69 2a61_A Transcriptional regulat 86.0 4.9 0.00017 33.8 10.0 65 20-91 33-97 (145)
70 3cjn_A Transcriptional regulat 86.0 5.9 0.0002 34.2 10.7 65 20-91 52-116 (162)
71 1sd4_A Penicillinase repressor 85.9 4.7 0.00016 33.3 9.6 100 20-131 10-113 (126)
72 2gxg_A 146AA long hypothetical 85.8 8 0.00027 32.5 11.3 47 20-67 37-83 (146)
73 3g3z_A NMB1585, transcriptiona 85.5 6.5 0.00022 33.2 10.5 65 20-91 31-95 (145)
74 3bpv_A Transcriptional regulat 85.4 9.8 0.00034 31.5 11.6 51 385-436 29-79 (138)
75 2cg4_A Regulatory protein ASNC 85.4 2.8 9.7E-05 36.3 8.2 66 387-453 10-79 (152)
76 3bj6_A Transcriptional regulat 85.4 13 0.00046 31.3 12.6 50 383-433 38-87 (152)
77 2rdp_A Putative transcriptiona 85.3 6.3 0.00022 33.4 10.4 49 20-68 42-90 (150)
78 1s3j_A YUSO protein; structura 85.2 7.3 0.00025 33.2 10.8 62 382-447 34-95 (155)
79 2l01_A Uncharacterized protein 85.0 0.98 3.3E-05 34.7 4.1 55 15-70 5-60 (77)
80 2p4w_A Transcriptional regulat 84.9 2.5 8.5E-05 39.0 7.9 69 19-93 14-82 (202)
81 2bv6_A MGRA, HTH-type transcri 84.9 3.2 0.00011 35.0 8.2 65 20-91 37-101 (142)
82 2oqg_A Possible transcriptiona 84.8 9 0.00031 30.9 10.7 59 387-454 23-81 (114)
83 2bv6_A MGRA, HTH-type transcri 84.7 3.8 0.00013 34.5 8.6 61 384-448 36-96 (142)
84 2vxz_A Pyrsv_GP04; viral prote 84.6 3.7 0.00013 35.6 8.0 74 388-471 14-87 (165)
85 2k02_A Ferrous iron transport 84.5 1.4 4.8E-05 34.9 5.1 45 23-67 5-49 (87)
86 2l02_A Uncharacterized protein 84.4 0.98 3.4E-05 35.1 4.0 55 380-435 3-57 (82)
87 3oop_A LIN2960 protein; protei 84.4 6.8 0.00023 33.0 10.1 48 20-67 37-84 (143)
88 2fsw_A PG_0823 protein; alpha- 84.4 3.8 0.00013 33.2 8.0 64 20-91 25-89 (107)
89 1okr_A MECI, methicillin resis 84.3 6.5 0.00022 32.3 9.7 100 20-131 10-113 (123)
90 2a61_A Transcriptional regulat 84.1 11 0.00037 31.6 11.3 53 383-436 31-83 (145)
91 2heo_A Z-DNA binding protein 1 83.9 2.1 7.2E-05 31.8 5.7 44 22-65 12-56 (67)
92 3bj6_A Transcriptional regulat 83.8 19 0.00064 30.4 13.3 48 20-67 40-87 (152)
93 3b73_A PHIH1 repressor-like pr 83.7 1.4 4.8E-05 36.6 5.0 60 19-91 12-73 (111)
94 2z99_A Putative uncharacterize 83.6 6.9 0.00024 36.4 10.2 136 292-453 18-160 (219)
95 3k0l_A Repressor protein; heli 83.5 13 0.00045 32.0 11.8 62 383-448 44-105 (162)
96 2cfx_A HTH-type transcriptiona 83.2 4.8 0.00016 34.5 8.6 66 388-454 8-77 (144)
97 2fbi_A Probable transcriptiona 83.2 9.7 0.00033 31.7 10.6 53 383-436 34-86 (142)
98 2fa5_A Transcriptional regulat 83.1 6.9 0.00024 33.7 9.8 47 20-66 49-95 (162)
99 3bja_A Transcriptional regulat 83.1 11 0.00037 31.2 10.8 60 385-448 33-92 (139)
100 4a5n_A Uncharacterized HTH-typ 83.0 2.9 9.9E-05 35.7 6.9 68 16-91 21-90 (131)
101 3eco_A MEPR; mutlidrug efflux 82.9 10 0.00034 31.7 10.5 48 20-67 31-80 (139)
102 2heo_A Z-DNA binding protein 1 82.9 1.2 4.1E-05 33.2 3.9 44 388-431 13-56 (67)
103 3hsr_A HTH-type transcriptiona 82.8 3.5 0.00012 34.8 7.6 65 20-91 36-100 (140)
104 1z91_A Organic hydroperoxide r 82.5 3.8 0.00013 34.7 7.7 66 20-92 40-105 (147)
105 3s2w_A Transcriptional regulat 82.4 11 0.00037 32.4 10.8 62 383-448 48-109 (159)
106 2qww_A Transcriptional regulat 82.4 15 0.0005 31.2 11.6 47 20-66 41-87 (154)
107 1s3j_A YUSO protein; structura 82.4 20 0.0007 30.2 12.6 48 20-67 37-84 (155)
108 3cdh_A Transcriptional regulat 82.4 12 0.0004 31.9 10.9 48 20-67 43-90 (155)
109 2nyx_A Probable transcriptiona 82.2 9 0.00031 33.4 10.2 47 20-66 45-91 (168)
110 1ub9_A Hypothetical protein PH 81.8 6.4 0.00022 30.8 8.3 63 386-453 17-79 (100)
111 2dk5_A DNA-directed RNA polyme 81.8 2.1 7.2E-05 34.1 5.2 65 384-451 19-86 (91)
112 1xn7_A Hypothetical protein YH 81.5 2.6 9E-05 32.5 5.5 46 114-167 5-50 (78)
113 3bro_A Transcriptional regulat 81.5 10 0.00034 31.6 10.0 60 385-448 34-95 (141)
114 1p4x_A Staphylococcal accessor 81.4 12 0.00041 35.5 11.5 137 16-167 28-208 (250)
115 1z6r_A MLC protein; transcript 81.4 1.7 5.9E-05 44.4 5.8 66 23-91 19-84 (406)
116 2hr3_A Probable transcriptiona 81.2 14 0.00047 31.0 10.9 47 387-434 37-84 (147)
117 2f2e_A PA1607; transcription f 80.9 4.6 0.00016 34.9 7.6 60 22-90 26-85 (146)
118 1tbx_A ORF F-93, hypothetical 80.8 9.8 0.00034 29.9 9.1 61 22-92 10-74 (99)
119 2p5v_A Transcriptional regulat 80.7 5.2 0.00018 35.0 8.1 67 387-454 12-82 (162)
120 2ia0_A Putative HTH-type trans 80.5 5.9 0.0002 35.2 8.4 64 388-453 20-87 (171)
121 3ech_A MEXR, multidrug resista 80.5 6.5 0.00022 33.1 8.4 47 20-66 37-83 (142)
122 2l01_A Uncharacterized protein 80.3 1.4 4.7E-05 33.8 3.4 57 380-437 5-62 (77)
123 2hoe_A N-acetylglucosamine kin 80.3 2 6.9E-05 43.5 5.8 63 24-91 24-86 (380)
124 3nrv_A Putative transcriptiona 80.2 8.8 0.0003 32.4 9.2 48 20-67 40-87 (148)
125 2h09_A Transcriptional regulat 80.0 7.8 0.00027 33.4 8.9 64 361-433 24-87 (155)
126 3k0l_A Repressor protein; heli 79.8 14 0.00046 31.9 10.5 48 20-67 46-93 (162)
127 3cjn_A Transcriptional regulat 79.7 13 0.00045 31.9 10.4 53 383-436 50-102 (162)
128 1lj9_A Transcriptional regulat 79.7 15 0.00053 30.6 10.6 51 383-434 27-77 (144)
129 3eco_A MEPR; mutlidrug efflux 79.4 15 0.0005 30.6 10.3 60 385-448 31-92 (139)
130 2jt1_A PEFI protein; solution 79.3 2.5 8.4E-05 32.6 4.7 44 22-65 6-55 (77)
131 2k02_A Ferrous iron transport 79.3 2.9 9.9E-05 33.0 5.1 46 114-167 5-50 (87)
132 2dbb_A Putative HTH-type trans 79.0 4.4 0.00015 35.0 6.9 67 386-453 10-80 (151)
133 4hbl_A Transcriptional regulat 79.0 4 0.00014 34.9 6.6 48 20-67 41-88 (149)
134 2rdp_A Putative transcriptiona 78.7 13 0.00045 31.3 9.9 60 385-448 42-101 (150)
135 3s2w_A Transcriptional regulat 78.7 10 0.00035 32.6 9.3 46 22-67 52-97 (159)
136 3u2r_A Regulatory protein MARR 78.5 30 0.001 29.9 12.4 62 384-449 45-108 (168)
137 2nnn_A Probable transcriptiona 78.3 9.8 0.00034 31.6 8.9 51 383-434 36-86 (140)
138 2gxg_A 146AA long hypothetical 78.2 17 0.00057 30.4 10.4 60 384-448 36-95 (146)
139 3df8_A Possible HXLR family tr 78.0 14 0.00047 30.1 9.3 61 19-91 26-89 (111)
140 3qph_A TRMB, A global transcri 77.9 1.2 3.9E-05 44.8 3.0 76 387-470 20-95 (342)
141 1z05_A Transcriptional regulat 77.8 1.8 6.3E-05 44.6 4.7 66 22-91 41-107 (429)
142 2y75_A HTH-type transcriptiona 77.6 2.4 8.1E-05 35.7 4.6 49 385-433 9-59 (129)
143 2frh_A SARA, staphylococcal ac 77.3 8 0.00027 32.2 7.9 48 20-67 37-86 (127)
144 1i1g_A Transcriptional regulat 77.2 3.1 0.0001 35.4 5.2 45 23-67 7-51 (141)
145 1on2_A Transcriptional regulat 77.1 26 0.00088 29.4 11.3 43 23-65 11-53 (142)
146 3e6m_A MARR family transcripti 77.0 14 0.00047 31.8 9.6 63 382-448 50-112 (161)
147 1p6r_A Penicillinase repressor 76.7 3.2 0.00011 31.8 4.7 48 19-66 8-59 (82)
148 2fxa_A Protease production reg 76.5 8.9 0.0003 35.1 8.6 48 21-68 49-96 (207)
149 2w25_A Probable transcriptiona 76.5 3.9 0.00013 35.3 5.8 51 18-68 5-55 (150)
150 2fbh_A Transcriptional regulat 76.2 15 0.0005 30.7 9.4 50 383-433 35-85 (146)
151 3dpl_C Cullin-5; ubiquitin, NE 75.8 10 0.00035 38.4 9.5 132 33-167 214-372 (382)
152 2cfx_A HTH-type transcriptiona 75.6 3.8 0.00013 35.2 5.4 47 21-67 6-52 (144)
153 2cyy_A Putative HTH-type trans 75.6 3.8 0.00013 35.4 5.5 49 20-68 7-55 (151)
154 3u1d_A Uncharacterized protein 75.3 20 0.00067 31.3 9.9 105 10-127 19-127 (151)
155 3fm5_A Transcriptional regulat 75.3 11 0.00037 32.0 8.4 61 384-448 38-99 (150)
156 3ech_A MEXR, multidrug resista 75.3 15 0.00052 30.7 9.2 50 383-433 35-84 (142)
157 3kp7_A Transcriptional regulat 75.2 16 0.00054 30.9 9.5 49 383-433 36-84 (151)
158 2nyx_A Probable transcriptiona 75.2 23 0.0008 30.6 10.8 50 383-433 43-92 (168)
159 1jgs_A Multiple antibiotic res 75.1 22 0.00076 29.3 10.2 59 385-447 34-92 (138)
160 3e6m_A MARR family transcripti 75.0 34 0.0012 29.2 11.7 48 20-67 53-100 (161)
161 3i4p_A Transcriptional regulat 74.9 4.1 0.00014 35.9 5.5 65 388-453 6-74 (162)
162 2p5v_A Transcriptional regulat 74.9 3.9 0.00013 35.9 5.4 48 20-67 10-57 (162)
163 2pn6_A ST1022, 150AA long hypo 74.7 4 0.00014 35.2 5.3 45 23-67 6-50 (150)
164 3cuo_A Uncharacterized HTH-typ 74.6 12 0.0004 29.2 7.8 47 386-433 25-71 (99)
165 3kp7_A Transcriptional regulat 74.3 19 0.00066 30.4 9.8 44 22-66 40-83 (151)
166 3cdh_A Transcriptional regulat 74.3 11 0.00036 32.2 8.1 50 383-433 41-90 (155)
167 3bdd_A Regulatory protein MARR 74.3 12 0.0004 31.2 8.2 59 376-435 20-80 (142)
168 2qww_A Transcriptional regulat 74.3 9.5 0.00032 32.4 7.7 48 384-432 40-87 (154)
169 3oop_A LIN2960 protein; protei 74.1 11 0.00039 31.5 8.1 61 384-448 36-96 (143)
170 3deu_A Transcriptional regulat 74.0 39 0.0013 29.2 11.9 60 385-448 53-113 (166)
171 3nqo_A MARR-family transcripti 73.6 38 0.0013 30.0 12.0 49 20-68 41-91 (189)
172 4hbl_A Transcriptional regulat 73.6 5.8 0.0002 33.8 6.1 62 383-448 39-100 (149)
173 2hye_C Cullin-4A, CUL-4A; beta 73.6 7.5 0.00026 43.2 8.5 128 32-167 605-749 (759)
174 2cg4_A Regulatory protein ASNC 73.5 4.2 0.00014 35.2 5.2 49 20-68 8-56 (152)
175 2w25_A Probable transcriptiona 73.0 7.4 0.00025 33.4 6.7 67 386-453 8-79 (150)
176 3i4p_A Transcriptional regulat 73.0 4.6 0.00016 35.5 5.4 46 22-67 5-50 (162)
177 2dbb_A Putative HTH-type trans 72.9 4.6 0.00016 34.8 5.3 49 19-67 8-56 (151)
178 3f3x_A Transcriptional regulat 72.8 34 0.0012 28.4 10.9 64 382-451 34-97 (144)
179 2cyy_A Putative HTH-type trans 72.4 4.1 0.00014 35.2 4.9 66 387-453 9-78 (151)
180 2fa5_A Transcriptional regulat 72.0 17 0.00059 31.0 9.0 52 382-434 44-97 (162)
181 3qph_A TRMB, A global transcri 71.7 0.23 7.9E-06 50.0 -4.0 68 20-97 18-85 (342)
182 2pg4_A Uncharacterized protein 71.7 6.4 0.00022 31.0 5.5 51 15-65 8-62 (95)
183 1i1g_A Transcriptional regulat 71.4 6.5 0.00022 33.3 5.9 66 387-453 6-75 (141)
184 1sd4_A Penicillinase repressor 71.2 34 0.0012 27.9 10.3 48 386-434 11-62 (126)
185 3jw4_A Transcriptional regulat 71.0 12 0.0004 31.7 7.5 48 20-67 41-90 (148)
186 3hsr_A HTH-type transcriptiona 70.9 8.2 0.00028 32.4 6.4 52 384-436 35-86 (140)
187 2y75_A HTH-type transcriptiona 70.8 7.1 0.00024 32.7 5.9 33 33-65 25-57 (129)
188 3deu_A Transcriptional regulat 70.8 26 0.0009 30.3 9.9 45 22-66 55-100 (166)
189 2h09_A Transcriptional regulat 70.7 9.5 0.00032 32.8 6.9 49 17-65 37-85 (155)
190 3g3z_A NMB1585, transcriptiona 70.6 19 0.00067 30.1 8.8 48 384-432 30-77 (145)
191 2dk5_A DNA-directed RNA polyme 70.4 5.1 0.00018 31.8 4.5 44 23-66 23-68 (91)
192 3b73_A PHIH1 repressor-like pr 70.4 3.9 0.00013 33.8 4.0 57 387-454 15-73 (111)
193 1r1u_A CZRA, repressor protein 70.3 19 0.00065 28.8 8.2 60 386-454 27-86 (106)
194 2fu4_A Ferric uptake regulatio 70.3 6.2 0.00021 30.1 5.0 54 111-167 17-72 (83)
195 3boq_A Transcriptional regulat 69.9 36 0.0012 28.9 10.6 48 20-67 47-95 (160)
196 2eth_A Transcriptional regulat 69.8 14 0.00048 31.5 7.8 51 383-434 42-92 (154)
197 2k4b_A Transcriptional regulat 69.2 5.6 0.00019 32.1 4.6 55 109-167 33-87 (99)
198 2e1c_A Putative HTH-type trans 69.1 5.7 0.00019 35.3 5.1 69 384-453 26-98 (171)
199 2ia0_A Putative HTH-type trans 68.5 7.8 0.00027 34.4 5.9 48 20-67 17-64 (171)
200 1tbx_A ORF F-93, hypothetical 68.1 21 0.00071 28.0 7.9 50 386-436 9-62 (99)
201 2jsc_A Transcriptional regulat 68.1 11 0.00038 31.0 6.4 59 387-454 23-81 (118)
202 1uly_A Hypothetical protein PH 67.9 10 0.00036 34.3 6.7 50 17-67 17-66 (192)
203 1p6r_A Penicillinase repressor 67.6 9.1 0.00031 29.1 5.4 54 110-167 8-61 (82)
204 2g9w_A Conserved hypothetical 67.5 35 0.0012 28.6 9.8 48 19-66 8-60 (138)
205 2e1c_A Putative HTH-type trans 67.5 7.8 0.00027 34.4 5.7 51 18-68 25-75 (171)
206 3f3x_A Transcriptional regulat 67.5 41 0.0014 27.9 10.2 47 20-67 37-83 (144)
207 2frh_A SARA, staphylococcal ac 66.8 18 0.00063 29.9 7.7 82 386-474 38-121 (127)
208 2vn2_A DNAD, chromosome replic 66.8 9.3 0.00032 32.1 5.8 32 35-66 52-83 (128)
209 3k69_A Putative transcription 66.3 7.5 0.00025 34.3 5.2 49 385-433 12-61 (162)
210 3t8r_A Staphylococcus aureus C 66.2 3.5 0.00012 35.6 3.0 51 383-433 9-61 (143)
211 2pg4_A Uncharacterized protein 66.2 19 0.00064 28.1 7.2 43 388-431 18-62 (95)
212 3tgn_A ADC operon repressor AD 65.2 11 0.00039 31.5 6.2 46 387-434 40-85 (146)
213 3lwf_A LIN1550 protein, putati 65.2 7.3 0.00025 34.3 4.9 51 383-433 25-77 (159)
214 2xrn_A HTH-type transcriptiona 65.1 28 0.00096 32.5 9.4 43 24-66 10-53 (241)
215 3fm5_A Transcriptional regulat 65.1 26 0.00088 29.5 8.5 46 22-67 41-87 (150)
216 1r7j_A Conserved hypothetical 64.9 49 0.0017 26.0 10.6 72 20-107 8-79 (95)
217 2kko_A Possible transcriptiona 64.6 30 0.001 27.8 8.3 62 384-454 24-85 (108)
218 2pex_A Transcriptional regulat 64.1 10 0.00035 32.2 5.7 47 386-433 48-94 (153)
219 2pn6_A ST1022, 150AA long hypo 64.1 4.6 0.00016 34.8 3.4 43 388-431 6-48 (150)
220 1y0u_A Arsenical resistance op 64.1 10 0.00035 29.8 5.3 46 385-433 31-76 (96)
221 2wte_A CSA3; antiviral protein 64.0 8.9 0.00031 36.3 5.6 49 18-66 150-198 (244)
222 3t8r_A Staphylococcus aureus C 63.7 11 0.00037 32.4 5.7 46 20-65 11-59 (143)
223 3eyy_A Putative iron uptake re 63.6 12 0.00042 32.1 6.0 53 112-167 20-72 (145)
224 1sfu_A 34L protein; protein/Z- 62.7 11 0.00038 28.7 4.8 40 26-65 21-60 (75)
225 2jt1_A PEFI protein; solution 62.6 7.4 0.00025 29.8 3.9 45 389-433 8-57 (77)
226 2qlz_A Transcription factor PF 62.6 7.7 0.00026 36.5 4.8 44 22-65 166-209 (232)
227 3f6o_A Probable transcriptiona 62.0 26 0.00089 28.6 7.6 61 385-454 18-78 (118)
228 1ylf_A RRF2 family protein; st 61.6 6 0.0002 34.3 3.6 49 385-433 14-63 (149)
229 3jw4_A Transcriptional regulat 61.5 10 0.00035 32.1 5.1 50 384-434 40-91 (148)
230 2z99_A Putative uncharacterize 61.4 70 0.0024 29.6 11.0 115 21-167 16-145 (219)
231 2x4h_A Hypothetical protein SS 60.5 71 0.0024 26.4 11.3 35 31-65 28-62 (139)
232 3u2r_A Regulatory protein MARR 60.5 23 0.00079 30.6 7.4 49 20-68 46-96 (168)
233 3ke2_A Uncharacterized protein 60.3 14 0.00048 30.5 5.2 78 27-110 26-103 (117)
234 2hzt_A Putative HTH-type trans 59.4 65 0.0022 25.6 10.1 50 383-434 11-62 (107)
235 4ham_A LMO2241 protein; struct 59.2 9.2 0.00031 32.4 4.3 65 357-433 3-71 (134)
236 2k4b_A Transcriptional regulat 59.1 17 0.00059 29.1 5.7 45 22-66 37-85 (99)
237 3nrv_A Putative transcriptiona 59.1 7.7 0.00026 32.8 3.9 51 385-436 40-90 (148)
238 1mkm_A ICLR transcriptional re 58.8 12 0.00041 35.2 5.5 43 24-66 12-55 (249)
239 2wte_A CSA3; antiviral protein 58.7 7.2 0.00025 37.0 3.9 50 383-433 150-199 (244)
240 3f6v_A Possible transcriptiona 57.8 20 0.00068 31.0 6.4 59 387-454 60-118 (151)
241 3lwf_A LIN1550 protein, putati 57.5 17 0.0006 31.8 6.0 33 33-65 43-75 (159)
242 4aik_A Transcriptional regulat 57.2 83 0.0028 26.6 10.4 66 383-451 27-94 (151)
243 3tdu_C Cullin-1, CUL-1; E2:E3, 56.5 22 0.00074 27.2 5.5 56 112-167 12-67 (77)
244 1okr_A MECI, methicillin resis 56.4 39 0.0013 27.3 7.8 47 386-433 11-61 (123)
245 3mq0_A Transcriptional repress 56.1 10 0.00034 36.5 4.5 46 386-431 31-76 (275)
246 3cuq_B Vacuolar protein-sortin 55.8 30 0.001 32.1 7.5 47 20-66 154-200 (218)
247 2fbk_A Transcriptional regulat 55.5 16 0.00054 32.2 5.5 48 385-433 69-119 (181)
248 1bja_A Transcription regulator 55.4 19 0.00064 28.8 5.2 46 20-65 16-62 (95)
249 1u2w_A CADC repressor, cadmium 55.4 15 0.00051 30.4 5.0 46 387-433 44-89 (122)
250 2fe3_A Peroxide operon regulat 55.0 31 0.0011 29.4 7.1 55 111-168 22-77 (145)
251 3nqo_A MARR-family transcripti 54.4 47 0.0016 29.4 8.6 64 383-450 39-104 (189)
252 2v79_A DNA replication protein 54.3 23 0.00078 30.2 6.0 58 399-460 50-107 (135)
253 3pqk_A Biofilm growth-associat 54.2 35 0.0012 26.8 6.9 55 377-433 15-69 (102)
254 1t6s_A Conserved hypothetical 53.9 87 0.003 27.5 9.8 122 20-167 7-139 (162)
255 3r4k_A Transcriptional regulat 53.7 7.6 0.00026 37.0 3.2 42 25-66 11-53 (260)
256 2xrn_A HTH-type transcriptiona 53.4 9.4 0.00032 35.8 3.7 88 386-483 7-97 (241)
257 2fbk_A Transcriptional regulat 53.3 20 0.00067 31.6 5.8 49 20-68 69-120 (181)
258 1on2_A Transcriptional regulat 53.2 13 0.00044 31.3 4.3 43 390-433 13-55 (142)
259 2fe3_A Peroxide operon regulat 53.2 33 0.0011 29.3 6.9 49 20-68 22-76 (145)
260 1z7u_A Hypothetical protein EF 52.9 87 0.003 25.1 11.5 48 385-434 22-70 (112)
261 2lkp_A Transcriptional regulat 52.8 27 0.00092 28.3 6.1 52 380-433 27-78 (119)
262 3jth_A Transcription activator 52.7 27 0.00092 27.2 5.9 47 385-433 23-69 (98)
263 1mzb_A Ferric uptake regulatio 52.5 22 0.00077 30.0 5.7 55 111-168 18-74 (136)
264 1z91_A Organic hydroperoxide r 52.5 8.5 0.00029 32.4 3.0 47 386-433 41-87 (147)
265 2fsw_A PG_0823 protein; alpha- 52.2 41 0.0014 26.8 7.1 49 384-434 24-73 (107)
266 1u5t_A Appears to BE functiona 52.1 20 0.00069 33.6 5.7 117 289-433 95-214 (233)
267 1xd7_A YWNA; structural genomi 52.0 13 0.00043 32.0 4.1 50 383-433 7-56 (145)
268 1mkm_A ICLR transcriptional re 51.8 12 0.00042 35.2 4.3 46 386-432 9-55 (249)
269 3f8b_A Transcriptional regulat 51.8 60 0.0021 26.5 8.1 67 19-91 11-85 (116)
270 3mq0_A Transcriptional repress 51.8 9.7 0.00033 36.6 3.6 43 24-66 34-77 (275)
271 2g9w_A Conserved hypothetical 51.8 94 0.0032 25.8 9.7 49 384-433 8-61 (138)
272 2lnb_A Z-DNA-binding protein 1 51.3 33 0.0011 26.2 5.6 47 19-65 18-65 (80)
273 1r1t_A Transcriptional repress 51.3 50 0.0017 27.2 7.6 59 387-454 48-106 (122)
274 3o2p_E Cell division control p 51.1 29 0.001 27.2 5.6 56 112-167 24-79 (88)
275 2xig_A Ferric uptake regulatio 51.0 28 0.00096 30.0 6.2 54 111-167 27-81 (150)
276 2fxa_A Protease production reg 49.6 20 0.00069 32.6 5.3 63 385-451 48-110 (207)
277 4ets_A Ferric uptake regulatio 49.5 28 0.00095 30.5 6.0 54 111-167 33-89 (162)
278 1ucr_A Protein DSVD; dissimila 49.3 28 0.00097 26.5 5.0 48 23-70 6-58 (78)
279 1yyv_A Putative transcriptiona 49.3 1.1E+02 0.0039 25.3 10.1 46 387-434 37-83 (131)
280 3lmm_A Uncharacterized protein 49.2 14 0.00047 39.7 4.6 95 334-430 456-560 (583)
281 2qvo_A Uncharacterized protein 49.0 24 0.00082 27.5 5.0 45 20-64 12-60 (95)
282 3mwm_A ZUR, putative metal upt 48.8 21 0.00073 30.3 5.0 52 113-167 16-68 (139)
283 3neu_A LIN1836 protein; struct 48.4 56 0.0019 27.0 7.5 32 34-65 36-68 (125)
284 2o03_A Probable zinc uptake re 48.4 29 0.00099 29.0 5.7 53 113-168 13-66 (131)
285 2p4w_A Transcriptional regulat 47.2 34 0.0012 31.2 6.4 50 385-436 15-64 (202)
286 2p5k_A Arginine repressor; DNA 46.5 47 0.0016 23.3 5.9 38 25-65 10-52 (64)
287 3eyy_A Putative iron uptake re 46.1 35 0.0012 29.1 6.0 47 23-69 22-73 (145)
288 3dv8_A Transcriptional regulat 46.0 33 0.0011 30.6 6.2 55 11-65 138-200 (220)
289 2o03_A Probable zinc uptake re 45.9 40 0.0014 28.1 6.2 47 23-69 14-66 (131)
290 2v79_A DNA replication protein 45.8 63 0.0022 27.3 7.5 34 33-66 50-83 (135)
291 1ylf_A RRF2 family protein; st 45.3 26 0.00089 30.1 5.1 33 33-65 29-61 (149)
292 2w57_A Ferric uptake regulatio 45.1 25 0.00085 30.3 4.9 53 112-167 18-72 (150)
293 1mzb_A Ferric uptake regulatio 45.1 46 0.0016 28.0 6.5 49 20-68 18-73 (136)
294 2b0l_A GTP-sensing transcripti 43.9 8.3 0.00028 31.2 1.4 45 22-66 30-75 (102)
295 3nw0_B Melanoma-associated ant 43.5 11 0.00038 35.0 2.4 33 416-449 141-174 (217)
296 2qvo_A Uncharacterized protein 43.2 58 0.002 25.2 6.4 44 386-430 13-60 (95)
297 2obp_A Putative DNA-binding pr 42.8 37 0.0013 27.0 5.1 34 33-66 35-68 (96)
298 1yg2_A Gene activator APHA; vi 42.7 31 0.0011 30.5 5.3 61 25-91 7-75 (179)
299 1uly_A Hypothetical protein PH 42.6 21 0.00072 32.3 4.1 47 385-433 20-66 (192)
300 1bja_A Transcription regulator 41.8 54 0.0019 26.1 5.9 49 108-164 11-62 (95)
301 2xig_A Ferric uptake regulatio 41.6 51 0.0017 28.3 6.4 47 23-69 30-82 (150)
302 3eyi_A Z-DNA-binding protein 1 41.3 27 0.00092 26.1 3.6 44 22-65 12-56 (72)
303 4b8x_A SCO5413, possible MARR- 41.3 75 0.0026 26.7 7.4 37 32-68 49-85 (147)
304 2o0y_A Transcriptional regulat 41.3 15 0.0005 34.9 3.0 45 21-65 21-69 (260)
305 3b02_A Transcriptional regulat 41.0 48 0.0017 29.0 6.4 58 8-65 99-170 (195)
306 1xd7_A YWNA; structural genomi 40.7 43 0.0015 28.5 5.7 45 20-65 9-54 (145)
307 2g7u_A Transcriptional regulat 40.4 18 0.00061 34.2 3.4 35 32-66 27-61 (257)
308 3tqn_A Transcriptional regulat 40.1 49 0.0017 26.8 5.7 30 36-65 35-64 (113)
309 2gqq_A Leucine-responsive regu 39.9 7.1 0.00024 34.2 0.5 51 18-68 11-61 (163)
310 3ryp_A Catabolite gene activat 39.8 51 0.0017 29.0 6.4 56 10-65 129-198 (210)
311 1ft9_A Carbon monoxide oxidati 39.7 77 0.0026 28.3 7.7 58 8-65 122-194 (222)
312 1iuy_A Cullin-3 homologue; win 39.6 61 0.0021 25.6 5.9 55 113-167 28-82 (92)
313 1lva_A Selenocysteine-specific 39.6 2.4E+02 0.0082 26.3 12.4 106 21-166 142-249 (258)
314 2ek5_A Predicted transcription 39.4 28 0.00095 29.2 4.1 32 34-65 27-59 (129)
315 2vn2_A DNAD, chromosome replic 39.1 21 0.00072 29.9 3.3 38 401-438 52-89 (128)
316 2nr3_A Hypothetical protein; A 39.0 41 0.0014 29.9 5.1 49 17-65 105-158 (183)
317 3by6_A Predicted transcription 38.3 22 0.00075 29.7 3.3 30 36-65 37-66 (126)
318 4ham_A LMO2241 protein; struct 38.1 23 0.0008 29.7 3.5 35 31-65 33-69 (134)
319 2ia2_A Putative transcriptiona 38.0 15 0.00052 34.9 2.5 46 21-66 19-68 (265)
320 2yu3_A DNA-directed RNA polyme 37.8 33 0.0011 27.3 4.1 46 23-68 40-87 (95)
321 1p4x_A Staphylococcal accessor 37.8 1.1E+02 0.0037 28.7 8.5 88 382-477 29-121 (250)
322 2x4h_A Hypothetical protein SS 37.6 21 0.00072 29.8 3.1 36 397-433 29-64 (139)
323 4esf_A PADR-like transcription 37.4 87 0.003 25.6 6.9 58 29-91 19-82 (117)
324 2w57_A Ferric uptake regulatio 37.2 51 0.0018 28.2 5.7 46 23-68 20-72 (150)
325 3bz6_A UPF0502 protein pspto_2 37.2 48 0.0016 29.5 5.3 49 18-66 106-159 (183)
326 1v4r_A Transcriptional repress 37.0 5.4 0.00019 31.9 -0.7 43 23-65 22-66 (102)
327 2g7u_A Transcriptional regulat 36.9 14 0.00047 35.1 2.0 85 387-483 16-105 (257)
328 3mwm_A ZUR, putative metal upt 36.7 61 0.0021 27.3 6.0 46 24-69 18-69 (139)
329 2gqq_A Leucine-responsive regu 36.4 16 0.00055 31.9 2.2 49 383-432 11-59 (163)
330 3r4k_A Transcriptional regulat 35.9 9.6 0.00033 36.2 0.7 90 386-483 7-99 (260)
331 3e97_A Transcriptional regulat 35.6 56 0.0019 29.3 6.1 49 17-65 143-206 (231)
332 4ev0_A Transcription regulator 35.5 66 0.0022 28.4 6.4 57 9-65 130-194 (216)
333 1xma_A Predicted transcription 34.4 2E+02 0.0069 24.3 9.0 63 386-452 42-112 (145)
334 1xma_A Predicted transcription 34.1 1.7E+02 0.0058 24.8 8.5 66 20-91 41-114 (145)
335 3iwz_A CAP-like, catabolite ac 34.1 98 0.0033 27.5 7.4 57 9-65 148-218 (230)
336 3cuq_A Vacuolar-sorting protei 34.0 33 0.0011 32.1 4.1 121 288-433 75-201 (234)
337 2fmy_A COOA, carbon monoxide o 34.0 74 0.0025 28.3 6.5 57 9-65 127-198 (220)
338 2gau_A Transcriptional regulat 33.7 95 0.0033 27.8 7.3 56 10-65 142-211 (232)
339 2zkz_A Transcriptional repress 33.6 1.3E+02 0.0043 23.4 7.1 61 386-455 28-88 (99)
340 3e6c_C CPRK, cyclic nucleotide 33.5 1E+02 0.0035 28.1 7.6 57 9-65 137-208 (250)
341 3hrs_A Metalloregulator SCAR; 33.3 37 0.0013 31.0 4.3 43 24-66 10-52 (214)
342 2o0y_A Transcriptional regulat 33.3 13 0.00046 35.2 1.2 86 387-483 25-115 (260)
343 3k2z_A LEXA repressor; winged 33.1 59 0.002 29.1 5.6 44 22-65 11-55 (196)
344 2f2e_A PA1607; transcription f 33.0 82 0.0028 26.7 6.3 45 387-433 26-70 (146)
345 2zcw_A TTHA1359, transcription 32.9 1.1E+02 0.0037 26.7 7.4 57 9-65 107-177 (202)
346 3la7_A Global nitrogen regulat 32.7 91 0.0031 28.4 7.0 53 13-65 157-224 (243)
347 3u1d_A Uncharacterized protein 32.6 95 0.0032 26.9 6.5 67 386-453 30-100 (151)
348 2ia2_A Putative transcriptiona 32.6 15 0.0005 35.1 1.4 85 387-483 23-112 (265)
349 3k69_A Putative transcription 32.4 40 0.0014 29.5 4.2 42 24-65 16-59 (162)
350 4esb_A Transcriptional regulat 32.2 87 0.003 25.4 6.0 65 21-91 10-80 (115)
351 1qzz_A RDMB, aclacinomycin-10- 31.9 47 0.0016 32.7 5.1 40 25-65 41-80 (374)
352 2hoe_A N-acetylglucosamine kin 31.8 31 0.001 34.5 3.8 45 388-434 23-67 (380)
353 3elk_A Putative transcriptiona 31.7 62 0.0021 26.5 5.0 68 19-92 13-86 (117)
354 3hhh_A Transcriptional regulat 31.5 2.1E+02 0.0071 23.2 9.8 60 27-91 19-84 (116)
355 4a5n_A Uncharacterized HTH-typ 31.4 1.4E+02 0.0049 24.9 7.4 52 382-435 22-75 (131)
356 2r3s_A Uncharacterized protein 31.3 79 0.0027 30.4 6.6 40 25-65 31-70 (335)
357 3d0s_A Transcriptional regulat 31.3 1E+02 0.0034 27.5 7.0 56 10-65 138-208 (227)
358 4b8x_A SCO5413, possible MARR- 31.2 39 0.0013 28.6 3.8 72 375-451 24-99 (147)
359 1z6r_A MLC protein; transcript 31.0 31 0.0011 34.8 3.7 44 388-432 19-62 (406)
360 1tw3_A COMT, carminomycin 4-O- 31.0 49 0.0017 32.4 5.1 40 25-65 44-83 (360)
361 3cuq_B Vacuolar protein-sortin 30.8 1.3E+02 0.0045 27.6 7.6 106 313-434 93-202 (218)
362 3k2z_A LEXA repressor; winged 30.8 39 0.0013 30.3 3.9 41 393-433 17-57 (196)
363 4a6d_A Hydroxyindole O-methylt 30.7 1.1E+02 0.0037 30.1 7.6 42 25-66 33-75 (353)
364 2qc0_A Uncharacterized protein 30.6 56 0.0019 32.7 5.5 54 377-431 288-342 (373)
365 3eqx_A FIC domain containing t 30.3 64 0.0022 32.3 5.8 53 378-431 289-342 (373)
366 1r7j_A Conserved hypothetical 30.2 40 0.0014 26.6 3.4 42 389-433 12-53 (95)
367 3df8_A Possible HXLR family tr 30.0 46 0.0016 26.9 3.9 47 385-433 27-76 (111)
368 2ip2_A Probable phenazine-spec 29.9 55 0.0019 31.7 5.2 40 25-65 33-72 (334)
369 1z05_A Transcriptional regulat 29.9 38 0.0013 34.4 4.2 45 388-433 42-86 (429)
370 3ihu_A Transcriptional regulat 29.9 39 0.0013 30.9 3.8 32 34-65 39-70 (222)
371 3dv8_A Transcriptional regulat 29.8 1.3E+02 0.0044 26.5 7.4 50 383-433 145-202 (220)
372 2oz6_A Virulence factor regula 29.1 1.1E+02 0.0038 26.6 6.8 53 13-65 129-195 (207)
373 3l09_A Putative transcriptiona 29.0 1.1E+02 0.0039 29.0 7.0 53 29-91 36-92 (266)
374 2l0k_A Stage III sporulation p 28.6 59 0.002 25.6 4.1 34 21-55 8-41 (93)
375 4ets_A Ferric uptake regulatio 28.3 1.1E+02 0.0038 26.5 6.4 46 23-68 36-89 (162)
376 3g2b_A Coenzyme PQQ synthesis 27.7 56 0.0019 25.8 3.9 54 109-164 41-94 (95)
377 3iwz_A CAP-like, catabolite ac 27.2 1.9E+02 0.0065 25.5 8.2 55 378-433 152-220 (230)
378 2v7f_A RPS19, RPS19E SSU ribos 26.9 1.1E+02 0.0036 26.5 5.8 57 111-167 53-115 (150)
379 1j5y_A Transcriptional regulat 26.8 75 0.0026 28.2 5.1 45 21-65 22-68 (187)
380 3k4g_A DNA-directed RNA polyme 26.8 87 0.003 24.4 4.7 46 20-65 18-71 (86)
381 2lky_A Uncharacterized protein 26.7 1E+02 0.0035 25.2 5.3 60 99-163 32-94 (112)
382 2obp_A Putative DNA-binding pr 26.6 84 0.0029 25.0 4.7 34 398-432 35-68 (96)
383 2gau_A Transcriptional regulat 26.6 2E+02 0.007 25.4 8.3 32 402-433 182-213 (232)
384 2do7_A Cullin-4B, CUL-4B; heli 26.4 1.3E+02 0.0044 24.1 5.8 54 112-167 32-85 (101)
385 3la7_A Global nitrogen regulat 26.3 2E+02 0.0068 26.0 8.2 51 382-433 161-226 (243)
386 3dkw_A DNR protein; CRP-FNR, H 26.2 1.5E+02 0.0052 26.1 7.3 54 12-65 144-209 (227)
387 1hsj_A Fusion protein consisti 26.2 38 0.0013 34.8 3.3 68 382-453 399-470 (487)
388 4aik_A Transcriptional regulat 26.2 2.9E+02 0.0098 23.1 10.1 45 24-68 35-80 (151)
389 3ryp_A Catabolite gene activat 25.9 1.8E+02 0.0062 25.2 7.6 52 381-433 135-200 (210)
390 1w7p_D VPS36P, YLR417W; ESCRT- 25.6 77 0.0026 33.7 5.5 47 19-65 493-546 (566)
391 1u5t_A Appears to BE functiona 25.4 81 0.0028 29.4 5.0 46 20-65 167-212 (233)
392 3elk_A Putative transcriptiona 25.1 1.1E+02 0.0038 24.9 5.4 38 412-451 45-82 (117)
393 3f8b_A Transcriptional regulat 25.1 2.2E+02 0.0076 22.9 7.3 53 114-166 14-66 (116)
394 1j1v_A Chromosomal replication 25.0 2E+02 0.0068 22.5 6.7 48 10-57 6-70 (94)
395 2wa0_A Melanoma-associated ant 25.0 34 0.0012 32.2 2.4 35 415-450 164-199 (240)
396 3kcc_A Catabolite gene activat 25.0 1.1E+02 0.0039 28.1 6.2 55 11-65 180-248 (260)
397 3i53_A O-methyltransferase; CO 24.8 75 0.0026 30.7 5.1 40 25-65 30-69 (332)
398 2pjp_A Selenocysteine-specific 24.7 2.8E+02 0.0095 22.4 8.7 105 22-166 9-113 (121)
399 2dql_A PEX protein; circadian 24.6 2.4E+02 0.0082 22.7 7.4 60 28-91 29-95 (115)
400 1x19_A CRTF-related protein; m 24.6 68 0.0023 31.4 4.8 40 25-65 56-95 (359)
401 3sxy_A Transcriptional regulat 24.6 39 0.0013 30.8 2.7 32 34-65 35-66 (218)
402 3b02_A Transcriptional regulat 24.1 1.5E+02 0.0052 25.6 6.7 51 382-433 108-172 (195)
403 3mzy_A RNA polymerase sigma-H 24.0 1.6E+02 0.0053 24.4 6.5 46 11-58 103-148 (164)
404 3c7j_A Transcriptional regulat 24.0 57 0.0019 30.2 3.8 33 33-65 48-80 (237)
405 2kvc_A Putative uncharacterize 23.9 1.1E+02 0.0037 24.7 4.8 64 98-163 29-92 (103)
406 2zcw_A TTHA1359, transcription 23.7 2.3E+02 0.0078 24.5 7.8 53 380-433 113-179 (202)
407 2v7f_A RPS19, RPS19E SSU ribos 23.3 76 0.0026 27.4 4.2 46 20-65 53-112 (150)
408 3htu_A Vacuolar protein-sortin 23.2 2.3E+02 0.0079 21.6 6.4 50 21-70 10-71 (79)
409 1z3e_B DNA-directed RNA polyme 23.1 1.2E+02 0.004 22.8 4.7 45 20-64 15-67 (73)
410 1hsj_A Fusion protein consisti 23.1 97 0.0033 31.7 5.8 45 24-68 408-454 (487)
411 3hrs_A Metalloregulator SCAR; 23.1 36 0.0012 31.1 2.2 43 390-433 11-53 (214)
412 3dp7_A SAM-dependent methyltra 22.8 81 0.0028 31.1 4.9 56 10-65 16-81 (363)
413 4fx0_A Probable transcriptiona 22.7 69 0.0024 27.0 3.8 33 33-65 51-83 (148)
414 3d0s_A Transcriptional regulat 22.4 2.6E+02 0.0089 24.6 8.1 51 382-433 145-210 (227)
415 2v9v_A Selenocysteine-specific 22.3 1.1E+02 0.0038 25.1 5.1 50 19-68 1-51 (135)
416 3tqn_A Transcriptional regulat 22.1 1.3E+02 0.0043 24.2 5.2 31 402-432 35-65 (113)
417 3f8m_A GNTR-family protein tra 22.1 85 0.0029 29.3 4.7 33 33-65 34-67 (248)
418 3e6c_C CPRK, cyclic nucleotide 22.0 2E+02 0.0067 26.0 7.3 52 381-433 144-210 (250)
419 4ev0_A Transcription regulator 22.0 1.3E+02 0.0044 26.4 5.8 47 386-433 142-196 (216)
420 2bgc_A PRFA; bacterial infecti 21.8 2.7E+02 0.0092 24.9 8.1 70 363-433 117-203 (238)
421 2oz6_A Virulence factor regula 21.7 3E+02 0.01 23.7 8.2 32 402-433 166-197 (207)
422 3e97_A Transcriptional regulat 21.7 80 0.0027 28.3 4.3 32 402-433 177-208 (231)
423 3gfk_B DNA-directed RNA polyme 21.5 84 0.0029 24.0 3.6 46 20-65 22-75 (79)
424 4esf_A PADR-like transcription 21.5 1.5E+02 0.005 24.2 5.5 39 411-451 41-79 (117)
425 2ek5_A Predicted transcription 21.4 1.2E+02 0.0042 25.1 5.0 31 402-432 30-60 (129)
426 1yg2_A Gene activator APHA; vi 21.2 1.8E+02 0.0063 25.3 6.5 52 116-167 6-57 (179)
427 1o5l_A Transcriptional regulat 21.2 37 0.0012 30.4 1.8 55 11-65 133-195 (213)
428 2p8t_A Hypothetical protein PH 21.2 98 0.0033 28.2 4.6 35 32-66 28-62 (200)
429 1j5y_A Transcriptional regulat 21.1 79 0.0027 28.0 4.1 45 388-432 24-69 (187)
430 3cuq_A Vacuolar-sorting protei 21.0 95 0.0032 29.0 4.6 45 21-65 155-199 (234)
431 2hs5_A Putative transcriptiona 20.6 73 0.0025 29.5 3.8 32 34-65 51-82 (239)
432 4g6q_A Putative uncharacterize 20.5 78 0.0027 28.0 3.8 66 20-91 23-89 (182)
No 1
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=100.00 E-value=1.8e-91 Score=758.30 Aligned_cols=489 Identities=21% Similarity=0.383 Sum_probs=376.6
Q ss_pred ccHHHHHHHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCc
Q 009725 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKA 81 (527)
Q Consensus 2 ~~~~~~~Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~ 81 (527)
||+++++||+.||+++||++|++||++|+++|++||++|++.|+|++++||+||++|||||||.|+..+. .
T Consensus 1 Ms~~~~~L~~~li~~~FG~~~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~---------~ 71 (534)
T 2xub_A 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKR---------G 71 (534)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT---------T
T ss_pred CCHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCC---------C
Confidence 7899999999999999999999999999999999999999999999999999999999999999764431 1
Q ss_pred ceEEEeehhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhccc----CCCccCHHHHHHHHHHH
Q 009725 82 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEK----EGNLVDLDSLRETLVKL 157 (527)
Q Consensus 82 ~~~Y~~~~~~il~rlR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~----~~~~~~~~~l~~~f~~L 157 (527)
.++|++|+++||+|+|||+||++|+++||++|+.|+++||.+|++|+++++..+.++.+ +++..+...++++|.+|
T Consensus 72 ~~~Y~~~~~~il~~lR~pk~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~L 151 (534)
T 2xub_A 72 VVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRL 151 (534)
T ss_dssp EEEEEECHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHH
T ss_pred cEEEEEChhhHHHHHhhHHHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876532 22234788999999999
Q ss_pred HhcccceecCCCCCCCCCCCCCCCcccccCCcCccccCCchhhhHHHHHHhCccchhhhhhhh-ccccccccccc-CCCC
Q 009725 158 VTAHYVERCPASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVT-NVESDVGEKEK-NSNN 235 (527)
Q Consensus 158 v~~~~i~~v~~~~~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~-~~~~ 235 (527)
+++|||++||+..+... ++.. ...|.+..+ .+ +.+.|..|. +.....+++.+ .+..
T Consensus 152 v~~~fI~rv~~~~~~~~--~~~~---~~~~~~~~~---~~--------------~~~~~~~p~~~~~~~~k~~~~~~~~~ 209 (534)
T 2xub_A 152 ADTHFVQRCPSVPTTEN--SDPG---PPPPAPTLV---IN--------------EKDMYLVPKLSLIGKGKRRRSSDEDA 209 (534)
T ss_dssp HHTTSEEECCCC--------------------------------------------------------------------
T ss_pred HhCCCEEeCCCCCcccc--cccc---cccCCchhh---hc--------------chhhhccchhhhHHHhhhccccCCcc
Confidence 99999999986432111 0110 011111100 00 011111111 00000111100 1111
Q ss_pred CCCCCccccccccccccCCCCCCceEEEeehhHHHHHhhhhHHHHHHHhhcCccHHHHHHHHHHccchhhhcccccCCCc
Q 009725 236 VTPGEKRKHDVLELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVP 315 (527)
Q Consensus 236 ~~~~~krk~~~~~~d~~~~~~~~~~~~rvN~e~f~~~lR~~~iv~~v~~r~~~~a~~v~~~~L~~~~~~~~~~~~~~s~p 315 (527)
+.+++|++.+..++|+ +...+++++|||||++|+++||++.|+++|++|+|..||.||++||++++..+ ++|.+.|.|
T Consensus 210 ~~~~~~k~~~~~~~~~-~~~~d~~~~wrvN~erf~~~lR~~~lv~~v~~r~~~~a~~V~~~lL~~~e~~~-~~~~~~s~~ 287 (534)
T 2xub_A 210 AGEPKAKRPKYTTDNK-EPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITT-SSSAPFTQP 287 (534)
T ss_dssp ----------------------CTTSEEECHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-CTTCSBCCC
T ss_pred ccccccccccCCCccc-cccCCCCceEEeeHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhccC-CccccCCCc
Confidence 1233344433222222 23357889999999999999999999999999999999999999999988766 568888999
Q ss_pred cChHHHHHHhhhcccCCCCCHHHHHHHHHHhccCC--C----CCCCCCcEEEehHHHHHHHHHHHHHHHHHHHcCCchHH
Q 009725 316 LSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--F----VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAYR 389 (527)
Q Consensus 316 ~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~~--~----~~~~~~~y~V~~~~i~~~lr~~~le~~v~~~~G~~~~R 389 (527)
+++++|.+.+. .+..++.+.+.+||.+|++++ | +++|+|+|+|||+++++.||+.+++++|.++||..|+|
T Consensus 288 is~~~I~~~l~---~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~g~g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~R 364 (534)
T 2xub_A 288 LSSNEIFRSLP---VGYNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCAR 364 (534)
T ss_dssp EEHHHHHHTSC---TTCCCCHHHHHHHHHHHHSCTTCCEEECCCCSSCEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ccHHHHHHHcC---CcccccHHHHHHHHHHHhCCcHHhhhccccCCCceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 99999999993 356788999999999999998 3 46789999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccC--CCCceEEEEEEchHHHHHHHHHHHHHHH
Q 009725 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG--ARQSQFLLWKVNRQILWKHVLDEMFHAA 467 (527)
Q Consensus 390 I~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~--~~~~t~~lw~v~~~~~~~~~~~~~yk~~ 467 (527)
|||+|+.+|++ ||++|++.+|||.|++|++||+|+++|||++||+||++ +|+|+||||++|.+++..++++++||++
T Consensus 365 I~r~L~~~~~l-~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~~~~l~~~~~k~l 443 (534)
T 2xub_A 365 IFRLVLQKKHI-EQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSI 443 (534)
T ss_dssp HHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHHHHHHHHHHHHHH
Confidence 99999999998 99999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccccc-----------------------ccCChhhHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 009725 468 LNLSLRVSYELDREKELLNLPA-----------------------DKRTGPLQDRYNRIRKVRILLESSQMKLDDAILLF 524 (527)
Q Consensus 468 ~nl~~R~~~e~~~~k~ll~k~~-----------------------~~~~~~e~~~l~~~~~~~~~L~~~~~rlD~~l~ll 524 (527)
.||++|+++|+++++.||+|.+ +..+|+|+++|++|++++++|+++++|||++||+|
T Consensus 444 ~nl~~Rl~~E~~~~~~lL~k~eR~d~~~~~vk~~~~~~~~~~e~~e~lt~~e~~~l~~~~~~~~~L~~~~~~lD~~i~vl 523 (534)
T 2xub_A 444 ANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLL 523 (534)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHCCC--------CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhhHHHHhhccccchhhhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 9999999999999999999943 35679999999999999999999999999999999
Q ss_pred cCC
Q 009725 525 HDF 527 (527)
Q Consensus 525 ~d~ 527 (527)
+||
T Consensus 524 ~dy 526 (534)
T 2xub_A 524 ESY 526 (534)
T ss_dssp HHH
T ss_pred HHH
Confidence 997
No 2
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=99.29 E-value=9.9e-10 Score=118.65 Aligned_cols=278 Identities=17% Similarity=0.226 Sum_probs=181.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcC------------CCHHHHHHHHHHHHhcccccccccccCC---
Q 009725 9 HAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTE------------LSDEQVKNALLVLIQQNCVQAFTTEQPD--- 73 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~------------l~~~~Vr~~L~vLiQhn~V~~~~~~~~~--- 73 (527)
....+|++.||+.++.|+..|+.+|++|+.+|..... -+...++.++..|+++|+|.......+.
T Consensus 90 k~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~~~~~~~~ 169 (534)
T 2xub_A 90 RYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENS 169 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCCC------
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCCCCccccc
Confidence 3578899999999999999999999999999976631 4678999999999999999854321110
Q ss_pred -------C----------------------------C-------------------CCCCCcceEEEeehhhHHHHhchh
Q 009725 74 -------G----------------------------F-------------------ADGPKANTQYVVLFDNILHRVRFA 99 (527)
Q Consensus 74 -------~----------------------------~-------------------~~~~~~~~~Y~~~~~~il~rlR~p 99 (527)
. . ..+.....+|.+|++.....+|--
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~k~~~~~~~~~~~~~~~k~~~~~~~~~~~~~d~~~~wrvN~erf~~~lR~~ 249 (534)
T 2xub_A 170 DPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQ 249 (534)
T ss_dssp -------------------------------------------------------------CTTSEEECHHHHHHHHHHH
T ss_pred ccccccCCchhhhcchhhhccchhhhHHHhhhccccCCccccccccccccCCCccccccCCCCceEEeeHHHHHHHHHHH
Confidence 0 0 000123468999999999999999
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHcccCCH------------HHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 100 KFLTILSQEFDQQCVELVQGLLEHGRLTL------------KQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 100 ~~i~~i~~~yG~~a~~I~~~lL~~G~~~~------------~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.++.+++++||..++.|++.+|.....+. .+|.+.+ +.+-..+...+.+.+..|..+
T Consensus 250 ~lv~~v~~r~~~~a~~V~~~lL~~~e~~~~~~~~~s~~is~~~I~~~l----~~~~~l~~~~l~~~L~lL~~~------- 318 (534)
T 2xub_A 250 AIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSL----PVGYNISKQVLDQYLTLLADD------- 318 (534)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTTTSCTTCSBCCCEEHHHHHHTS----CTTCCCCHHHHHHHHHHHHSC-------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhhccCCccccCCCcccHHHHHHHc----CCcccccHHHHHHHHHHHhCC-------
Confidence 99999999999999999999997544332 1111111 000001111122222111111
Q ss_pred CCCCCCCCCCCCCCcccccCCcCccccCCchhhhHHHHHHhCccchhhhhhhhcccccccccccCCCCCCCCCccccccc
Q 009725 168 ASEPLLMPISEEEGPARKKGSKSAKKIGEPETIEQQVVEAALPMEAMRFSVVTNVESDVGEKEKNSNNVTPGEKRKHDVL 247 (527)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~g~~~~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~krk~~~~ 247 (527)
+..| =++.+
T Consensus 319 ---------------------------------------------~~~f------------------------v~~~g-- 327 (534)
T 2xub_A 319 ---------------------------------------------PLEF------------------------VGKSG-- 327 (534)
T ss_dssp ---------------------------------------------TTCC------------------------EEECC--
T ss_pred ---------------------------------------------cHHh------------------------hhccc--
Confidence 0011 00000
Q ss_pred cccccCCCCCCceEEEeehhHHHHHhhhhHHHHHHHhhcCccHHHHHHHHHHccchhhhcccccCCCccChHHHHHHhhh
Q 009725 248 ELDECGVADEQSVVYRANFEGFIRRLRHKGCIDHVRAHLDDGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIK 327 (527)
Q Consensus 248 ~~d~~~~~~~~~~~~rvN~e~f~~~lR~~~iv~~v~~r~~~~a~~v~~~~L~~~~~~~~~~~~~~s~p~s~~~I~~~l~~ 327 (527)
+ ..+-.|.|||.+....+|...+.+.+.++||..|..|++.++.... ++-.+|.+..
T Consensus 328 --~------~g~g~y~V~~~~~~~~lr~~~ie~ii~~~~G~~a~RI~r~L~~~~~-------------l~d~~ia~~a-- 384 (534)
T 2xub_A 328 --D------SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-------------IEQKQVEDFA-- 384 (534)
T ss_dssp --C------CSSCEEEEBHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC----------------CHHHHHHHH--
T ss_pred --c------CCCceEEEeHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHcCC-------------CCHHHHHHHh--
Confidence 0 0134699999999999999999999999999999999999998542 3334555544
Q ss_pred cccCCCCCHHHHHHHHHHhccCCCC---------CCCC----CcEEEehHHHHHHHHHHHHHHHHH--HHcCCchHHHHH
Q 009725 328 SEAGRNMTLDHVRASLVQLGELSFV---------DASS----DSYSIDFEKIIEIAQNEEVESVVS--KRYGRDAYRIFR 392 (527)
Q Consensus 328 ~~~~~~~~~~~i~~~L~~La~~~~~---------~~~~----~~y~V~~~~i~~~lr~~~le~~v~--~~~G~~~~RI~r 392 (527)
.+....+++.|-.|...+|+ +.+. =.|++|..++.+.+.......+.. +|.-.+--..++
T Consensus 385 -----~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~~~~l~~~~~k~l~nl~~Rl~~E~~~~~~ 459 (534)
T 2xub_A 385 -----MIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKR 459 (534)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred -----CCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 24555677777777777732 1122 268999999999888877665543 555555566667
Q ss_pred HHHH
Q 009725 393 LLSK 396 (527)
Q Consensus 393 ~l~~ 396 (527)
+|-+
T Consensus 460 lL~k 463 (534)
T 2xub_A 460 LLEK 463 (534)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 3
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=98.20 E-value=2.9e-06 Score=71.55 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhC-CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEch
Q 009725 374 EVESVVSKRYGRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 452 (527)
Q Consensus 374 ~le~~v~~~~G~~~~RI~r~l~~k~-~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~ 452 (527)
.+.+++...+|....+|+..+...| .+ .+.+|++...++...+++.|..|..+|+|..+..+.. ..++.+|+|.++.
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~-s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~-~~g~~v~~~~~~~ 84 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEM-TDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDK-DSGWFIYYWKPNI 84 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCB-CHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC----CCCCEEEEECTH
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccC-CCceEEEEeecCH
Confidence 5678899999999999999998778 77 9999999999999999999999999999987755322 3456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009725 453 QILWKHVLDEMFHAALNLSLRVSYEL 478 (527)
Q Consensus 453 ~~~~~~~~~~~yk~~~nl~~R~~~e~ 478 (527)
+.+...+...+.+.+.++..|+.+|+
T Consensus 85 ~~i~~~~~~~~~~~~e~l~~~l~~e~ 110 (110)
T 1q1h_A 85 DQINEILLNRKRLILDKLKTRLEYEK 110 (110)
T ss_dssp HHHC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99989888899999999999988874
No 4
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.30 E-value=0.0099 Score=49.41 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEE
Q 009725 8 KHAVHVITNHFGDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYV 86 (527)
Q Consensus 8 ~Lc~~ii~~~FG~~v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~ 86 (527)
.....++...+|+..-+|...|+..| ++|..+|+..++++.+.|+.+|..|...|+|.......+++ .....+|.
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~----g~~v~~~~ 81 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDS----GWFIYYWK 81 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---C----CCCEEEEE
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCC----ceEEEEee
Confidence 34567888999999999999999888 99999999999999999999999999999998432211111 11123457
Q ss_pred eehhhHHH
Q 009725 87 VLFDNILH 94 (527)
Q Consensus 87 ~~~~~il~ 94 (527)
++.+.+..
T Consensus 82 ~~~~~i~~ 89 (110)
T 1q1h_A 82 PNIDQINE 89 (110)
T ss_dssp CTHHHHC-
T ss_pred cCHHHHHH
Confidence 77766544
No 5
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.74 E-value=0.14 Score=48.63 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH-------
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI------- 92 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i------- 92 (527)
+.-.+|...|. .|++|..+|++.++++.+.|.+-|-.|.+.|+|...... +..+ .++..+|.++.+..
T Consensus 12 ~~R~~IL~~L~-~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~--gr~~--GRp~~~Y~Lt~~~~~~~~l~~ 86 (232)
T 2qlz_A 12 KVRRDLLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKE--ERFI--GPTKKYYKISIAKSYVFTLTP 86 (232)
T ss_dssp HHHHHHHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEEC--C-------CEEEEEECCCEEEEEEEET
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeec--CCCC--CCccEEEEEccchhhHHHHHH
Confidence 55556777775 699999999999999999999999999999999842222 1111 12246777654321
Q ss_pred -----------------------------------HHHhc--------hhhHHHHHHHH---------------hhh-hH
Q 009725 93 -----------------------------------LHRVR--------FAKFLTILSQE---------------FDQ-QC 113 (527)
Q Consensus 93 -----------------------------------l~rlR--------~p~~i~~i~~~---------------yG~-~a 113 (527)
...++ ++.|-..+... .|+ +.
T Consensus 87 ~~~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~le~ig~~~~ 166 (232)
T 2qlz_A 87 EMFWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVLEAFKTIESYRSSLMRKIKEAYLKEIGDMTQ 166 (232)
T ss_dssp TEEEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 00111 11111111111 222 26
Q ss_pred HHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009725 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (527)
Q Consensus 114 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v 166 (527)
..++..+|.+|-+|..++-+.+.- +...+...+..|.+.|.|.+.
T Consensus 167 ~~~l~~~l~~~~~t~~~la~~~~l--------~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLNGRATVEELSDRLNL--------KEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHTC--------CHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCc--------CHHHHHHHHHHHHhcCCeEEe
Confidence 677777899999999999888643 677899999999999999765
No 6
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=95.22 E-value=0.03 Score=43.80 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcc-cHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEch
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKK-DAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 452 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k-~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~ 452 (527)
-+|+.+|...|.. ..++|++..-|+.. .+|..||.|.++|+|.-+ ..+|. +|++..
T Consensus 14 ~~IL~~Lk~~g~~-ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~------~~gRP--~w~LT~ 70 (79)
T 1xmk_A 14 EKICDYLFNVSDS-SALNLAKNIGLTKARDINAVLIDMERQGDVYRQ------GTTPP--IWHLTD 70 (79)
T ss_dssp HHHHHHHHHTCCE-EHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE------CSSSC--EEEECH
T ss_pred HHHHHHHHHcCCc-CHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec------CCCCC--CeEeCH
Confidence 4788999998988 99999999999998 999999999999999733 22333 888764
No 7
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.15 E-value=0.34 Score=39.86 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=59.1
Q ss_pred CccHHHHHHHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCC
Q 009725 1 MLTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPK 80 (527)
Q Consensus 1 m~~~~~~~Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~ 80 (527)
||.-....-...+++-.-.+.-..|...| ..|+++..+|++.++++++.|...|-.|.+.|+|.... . + +
T Consensus 2 ~m~m~~~~~~~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~-~--g------r 71 (114)
T 2oqg_A 2 GMTVGTYAELASVFAALSDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK-V--G------R 71 (114)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE-E--T------T
T ss_pred CCCcCcHHHHHHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe-c--C------C
Confidence 44433333344455444446667788888 88999999999999999999999999999999997422 2 1 1
Q ss_pred cceEEEeehhhH
Q 009725 81 ANTQYVVLFDNI 92 (527)
Q Consensus 81 ~~~~Y~~~~~~i 92 (527)
..+|.+.....
T Consensus 72 -~~~y~l~~~~~ 82 (114)
T 2oqg_A 72 -EIRYRALGAEL 82 (114)
T ss_dssp -EEEEEECSHHH
T ss_pred -EEEEEechHHH
Confidence 46788887654
No 8
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.13 E-value=0.13 Score=42.14 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEe
Q 009725 8 KHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVV 87 (527)
Q Consensus 8 ~Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~ 87 (527)
+-...+++-.-.+.--+|...|. .|++++.+|++.++++.+.|...|-.|.+.|+|.. ... + ...+|.+
T Consensus 14 ~~~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~-~~~--g-------r~~~y~l 82 (106)
T 1r1u_A 14 ERVTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKA-KRQ--G-------QSMIYSL 82 (106)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-EEE--T-------TEEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C-------CEEEEEE
Confidence 34444554444466667888877 89999999999999999999999999999999983 322 1 1478999
Q ss_pred ehhhHHHHh
Q 009725 88 LFDNILHRV 96 (527)
Q Consensus 88 ~~~~il~rl 96 (527)
+.+.+...+
T Consensus 83 ~~~~~~~~~ 91 (106)
T 1r1u_A 83 DDIHVATML 91 (106)
T ss_dssp SSHHHHHHH
T ss_pred ChHHHHHHH
Confidence 877654433
No 9
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.62 E-value=0.27 Score=39.82 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=60.2
Q ss_pred HHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 12 HVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 12 ~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
.+++-.=++.--.|...| ..|++|..+|++.++++.+.|.+-|-.|.+.|+|.. ... + ..++|+++.+.
T Consensus 15 ~~~~~l~~~~r~~Il~~L-~~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~-~~~--g-------~~~~y~l~~~~ 83 (102)
T 3pqk_A 15 NLLKTLSHPVRLMLVCTL-VEGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVET-RRN--I-------KQIFYRLTEAK 83 (102)
T ss_dssp HHHHHHCSHHHHHHHHHH-HTCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEE-ECS--S-------SCCEEEECSST
T ss_pred HHHHHcCCHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C-------CEEEEEECcHH
Confidence 344333346666777777 569999999999999999999999999999999983 222 1 14789999773
Q ss_pred HHHHhchhhHHHHHHHHhhh
Q 009725 92 ILHRVRFAKFLTILSQEFDQ 111 (527)
Q Consensus 92 il~rlR~p~~i~~i~~~yG~ 111 (527)
+..++..+.+.|+.
T Consensus 84 ------~~~~~~~l~~~~~~ 97 (102)
T 3pqk_A 84 ------AAQLVNALYTIFCA 97 (102)
T ss_dssp ------HHHHHHHHHHHTGG
T ss_pred ------HHHHHHHHHHHhcc
Confidence 34445555555544
No 10
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=93.98 E-value=0.17 Score=40.71 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=51.0
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHH
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILH 94 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~ 94 (527)
++.--+|...|.. |+.|..+|++.++++.+.|..-|-.|.+.|+|... .. +...+|+++.+.+-.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~-~~---------g~~~~y~l~~~~~~~ 86 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR-KE---------AQTVYYTLKSEEVKA 86 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-CC---------TTCCEEEECCHHHHH
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE-Ee---------CCEEEEEECHHHHHH
Confidence 3555567777655 99999999999999999999999999999999832 22 114789998775443
No 11
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=93.90 E-value=0.13 Score=39.92 Aligned_cols=44 Identities=23% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.+|..+|...|++|..+|++.++++.+.|+..|-.|.+.|+|..
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 46778888889999999999999999999999999999999973
No 12
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=93.60 E-value=0.28 Score=39.12 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHH
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILH 94 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~ 94 (527)
+.-..|...|...|++|..+|++.++++.+.|...|-.|...|+|... .. + + ..+|.++.+.+-.
T Consensus 24 ~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~-~~--~------r-~~~y~l~~~~~~~ 88 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQ-RD--A------Q-RILYSIKNEAVNA 88 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE-EC--S------S-CEEEEECCHHHHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-ec--C------C-EEEEEEChHHHHH
Confidence 566678888877779999999999999999999999999999999843 22 1 1 4689888765433
No 13
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.34 E-value=0.37 Score=40.62 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVR 97 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 97 (527)
.+.--+|...|...|+.|+.+|++.++++.+.|..-|-.|.+.|+|.. ... + ..++|+++.+.+...+.
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~-~~~--g-------r~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNF-RKE--G-------KLALYSLGDEHIRQIMM 109 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-C-------------CCEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEE--C-------CEEEEEECHHHHHHHHH
Confidence 344457888887789999999999999999999999999999999983 222 1 14689999876655443
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.16 E-value=0.097 Score=41.08 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.6
Q ss_pred HHHHHHHHHhC---CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 388 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 388 ~RI~r~l~~k~---~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+|+.+|...+ .+ ...+|++...++...++..||+|.++|+|...
T Consensus 13 ~~IL~~L~~~~pg~~~-t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 36888888887 77 99999999999999999999999999999665
No 15
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.12 E-value=0.35 Score=39.81 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEee
Q 009725 9 HAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVL 88 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~ 88 (527)
-...+++-.-.+.--+|...|. .|++|..+|+..++++++.|...|-.|.+.|+|... .. + + .++|.++
T Consensus 14 ~~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~-~~--g------r-~~~y~l~ 82 (108)
T 2kko_A 14 QVARVGKALANGRRLQILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGLVEAR-RE--G------T-RQYYRIA 82 (108)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-EE--T------T-EEEEEES
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE-Ee--C------C-EEEEEEC
Confidence 3444554444455667888775 699999999999999999999999999999999832 22 1 1 4689898
Q ss_pred hhhHH
Q 009725 89 FDNIL 93 (527)
Q Consensus 89 ~~~il 93 (527)
.+.+.
T Consensus 83 ~~~~~ 87 (108)
T 2kko_A 83 GEDVA 87 (108)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 76643
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.04 E-value=0.38 Score=40.63 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=48.2
Q ss_pred HHHHHhhc--hhHHHHHHHHHhcCC--CCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 12 HVITNHFG--DLVAKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 12 ~ii~~~FG--~~v~~V~~~Ll~~G~--~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.++...|| +.=..|..+|..+|. +|..+|+..++++.+.|...|-.|.+.|+|....
T Consensus 16 ~~l~~~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 16 DVIKCALNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 34555555 666779999998876 9999999999999999999999999999998543
No 17
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=92.80 E-value=1.9 Score=38.33 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=94.8
Q ss_pred hchhHHHHHHHHHhc-------CCCCHHHHHhhc----------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCC
Q 009725 18 FGDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPK 80 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~-------G~~tl~~i~~~t----------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~ 80 (527)
+-+.-++|..||+.+ -++||..|...+ +++...|..+|=.|.+.++|... .. .+
T Consensus 22 Ls~~EaRVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnRePVm~l~e~eV~~aLd~L~~~~Lv~~~--~g-------sR 92 (183)
T 2nr3_A 22 LNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLV--MG-------SR 92 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEE--CC-------SS
T ss_pred CCHHHHHHHHHhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeeec--cC-------Cc
Confidence 455667788888764 589999997664 47889999999999999999622 21 12
Q ss_pred cceEEEeehhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhc
Q 009725 81 ANTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTA 160 (527)
Q Consensus 81 ~~~~Y~~~~~~il~rlR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~ 160 (527)
+..|+=+..+ .-.+......|+-.||..|-.|+.++-.+..--. +..+.++++..+..|+..
T Consensus 93 -v~Ky~Hr~~~--------------~l~l~~~e~All~~LlLRGpQT~gELRtRs~Rl~---~F~d~~~Ve~~L~~L~~r 154 (183)
T 2nr3_A 93 -ADRWEHKVDK--------------GLELVPAQVILTGLLLLRGPQTVSELLTRSNRMH---DFEDSEQVVHQLERLIAR 154 (183)
T ss_dssp -CCEEEECHHH--------------HHTCCHHHHHHHHHHHHHCSEEHHHHHHHTTTTS---CCSSHHHHHHHHHHHHHT
T ss_pred -hHHHHhhhhh--------------hcCCCHHHHHHHHHHHhcCCCChHHHHHhhhcCC---cCCCHHHHHHHHHHHhhC
Confidence 5789877654 1245567888999999999999999988754211 244788999999999999
Q ss_pred ccceecCC
Q 009725 161 HYVERCPA 168 (527)
Q Consensus 161 ~~i~~v~~ 168 (527)
.++.+.|.
T Consensus 155 ~lV~~LpR 162 (183)
T 2nr3_A 155 GLATLVPR 162 (183)
T ss_dssp TSEEEECC
T ss_pred cHHHhcCC
Confidence 99988863
No 18
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.67 E-value=1.1 Score=37.80 Aligned_cols=74 Identities=14% Similarity=0.213 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCc--hHHHHHHHHHhCC--CcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEE
Q 009725 375 VESVVSKRYGRD--AYRIFRLLSKSGR--LLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 450 (527)
Q Consensus 375 le~~v~~~~G~~--~~RI~r~l~~k~~--l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v 450 (527)
++.++...||-. -.+|+.+|...+. + ...+|++...++...+...|..|.+.|||.-...+.. .....|.|..
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~~~~-t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d--~~~~~~~y~~ 90 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPDRWI-DTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLD--GGGYVYIYKI 90 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTTCCE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECT--TSCEEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccC--CCcceEEEec
Confidence 455555555543 5578999987766 7 9999999999999999999999999999976655543 2235566665
Q ss_pred c
Q 009725 451 N 451 (527)
Q Consensus 451 ~ 451 (527)
.
T Consensus 91 ~ 91 (123)
T 3r0a_A 91 Y 91 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.51 E-value=1.1 Score=38.10 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=47.9
Q ss_pred HcC--CchHHHHHHHH-HhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEE
Q 009725 382 RYG--RDAYRIFRLLS-KSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 449 (527)
Q Consensus 382 ~~G--~~~~RI~r~l~-~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~ 449 (527)
.+| ..-.+|+.+|. ..+.+ ...+|++...++...+...+.+|.+.|||.-..-| ...|.+|+.-
T Consensus 21 ~~gl~~~~~~il~~L~~~~~~~-t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~---~d~r~~~~~~ 87 (152)
T 1ku9_A 21 IHGLNKSVGAVYAILYLSDKPL-TISDIMEELKISKGNVSMSLKKLEELGFVRKVWIK---GERKNYYEAV 87 (152)
T ss_dssp HTTCCHHHHHHHHHHHHCSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT---TCSSCEEEEC
T ss_pred HcCCChhHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC---CCceEEEeec
Confidence 355 44567888885 45677 99999999999999999999999999999543212 3355566554
No 20
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=92.46 E-value=2.6 Score=35.44 Aligned_cols=75 Identities=11% Similarity=0.146 Sum_probs=55.8
Q ss_pred HHHHHHhhc--hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEee
Q 009725 11 VHVITNHFG--DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVL 88 (527)
Q Consensus 11 ~~ii~~~FG--~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~ 88 (527)
...+...|| +.--.|...|..+|++|..+|++..++++..|...|-.|.+.|+|.....+. + +...+|.+.
T Consensus 20 ~~~~~~~~~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~-d------~r~~~~~lT 92 (142)
T 3bdd_A 20 SNLFEKQLGISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD-N------QREVLVWPT 92 (142)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-S------TTCEEEEEC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC-C------CCeeEEEEC
Confidence 344455545 4455678888888999999999999999999999999999999998443332 1 224567776
Q ss_pred hhhH
Q 009725 89 FDNI 92 (527)
Q Consensus 89 ~~~i 92 (527)
..+.
T Consensus 93 ~~G~ 96 (142)
T 3bdd_A 93 EQAR 96 (142)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 21
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=92.20 E-value=0.92 Score=38.20 Aligned_cols=75 Identities=12% Similarity=0.092 Sum_probs=55.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeeh
Q 009725 10 AVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLF 89 (527)
Q Consensus 10 c~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~ 89 (527)
...+++-.-.+.--+|...|. .|+.++.+|++.++++.+.|.+.|-.|.+.|+|.. ... + + ..+|+++.
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~-~~~--g------r-~~~y~l~~ 104 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSY-RKQ--G------R-HVYYQLQD 104 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEESS
T ss_pred HHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE-EEe--C------C-EEEEEECh
Confidence 344444433344556777775 68999999999999999999999999999999983 332 1 1 46899987
Q ss_pred hhHHHH
Q 009725 90 DNILHR 95 (527)
Q Consensus 90 ~~il~r 95 (527)
+.+...
T Consensus 105 ~~l~~~ 110 (122)
T 1r1t_A 105 HHIVAL 110 (122)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 22
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.13 E-value=0.076 Score=41.70 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+.+|+.+|...| + .-.+|++...++...+|..||+|.++|+|.-+
T Consensus 19 ~~~IL~lL~~~g-~-sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 19 VCEAIKTIGIEG-A-TAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHSSST-E-EHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHcC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 457888887655 6 99999999999999999999999999999553
No 23
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.11 E-value=0.95 Score=37.56 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCc
Q 009725 2 LTEYGTKHAVHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKA 81 (527)
Q Consensus 2 ~~~~~~~Lc~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~ 81 (527)
++.....-...+++-.-.+.--.|...|.. |..++.+|++.++++.+.|...|-.|.+.|+|. +.... +
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~-~~~~~--------r- 82 (119)
T 2lkp_A 14 LDSQAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV-GDRAG--------R- 82 (119)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE-EEEET--------T-
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE-EEecC--------C-
Confidence 334444444555544444555667787776 889999999999999999999999999999997 33321 1
Q ss_pred ceEEEeehhhH
Q 009725 82 NTQYVVLFDNI 92 (527)
Q Consensus 82 ~~~Y~~~~~~i 92 (527)
..+|++....+
T Consensus 83 ~~~~~~~~~~~ 93 (119)
T 2lkp_A 83 SIVYSLYDTHV 93 (119)
T ss_dssp EEEEEESCHHH
T ss_pred EEEEEEchHHH
Confidence 46788885543
No 24
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.96 E-value=0.23 Score=41.62 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=53.4
Q ss_pred HHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 13 ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
+++-.-.+.--+|...|. .|+.+..+|++.++++.+.|..-|-.|...|+|.. ... + ...+|+++.+.+
T Consensus 14 ~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~-~~~--g-------r~~~y~l~~~~~ 82 (118)
T 2jsc_A 14 LGRALADPTRCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVA-TYE--G-------RQVRYALADSHL 82 (118)
T ss_dssp HHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEE-EEC--S-------SSEEEEESSHHH
T ss_pred HHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEE-EEE--C-------CEEEEEEChHHH
Confidence 343333455667888775 78899999999999999999999999999999983 222 1 147899987654
Q ss_pred H
Q 009725 93 L 93 (527)
Q Consensus 93 l 93 (527)
.
T Consensus 83 ~ 83 (118)
T 2jsc_A 83 A 83 (118)
T ss_dssp H
T ss_pred H
Confidence 3
No 25
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.81 E-value=0.85 Score=36.21 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
++.--.|...|..+|++|..+|++.++++.+.|...|-.|.+.|+|.....+. .+...+|.+.....
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~-------~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIA-------DRPRTVVEITDFGM 81 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC-------CcceEEEEECHHHH
Confidence 35556788888889999999999999999999999999999999998433221 12257898887763
No 26
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.58 E-value=1.1 Score=35.99 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=41.4
Q ss_pred chhHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 19 GDLVAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 19 G~~v~~V~~~Ll~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.+.-..+...|+. .|++|..+|++.++++.+.|...|-.|.+.|+|..
T Consensus 20 ~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~ 68 (109)
T 2d1h_A 20 TDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVR 68 (109)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 3555556666666 88999999999999999999999999999999984
No 27
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.51 E-value=1.7 Score=34.74 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=51.4
Q ss_pred HcC--CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 382 RYG--RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 382 ~~G--~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
.+| ..-.+|+.+|...+.+ ...+|++...++...+...|.+|.+.|+|.-...| . .+..|++...
T Consensus 15 ~~~l~~~~~~il~~l~~~~~~-s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~-~---~r~~~~~~t~ 81 (109)
T 1sfx_A 15 KLSFKPSDVRIYSLLLERGGM-RVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE-K---GWVGYIYSAE 81 (109)
T ss_dssp HTCCCHHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE-S---SSEEEEEEEC
T ss_pred HcCCCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec-C---CceEEEEecC
Confidence 355 3456788999877888 99999999999999999999999999999876655 2 4455555443
No 28
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.47 E-value=0.17 Score=39.18 Aligned_cols=45 Identities=31% Similarity=0.442 Sum_probs=40.9
Q ss_pred HHHHHHHHHhC---CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 388 YRIFRLLSKSG---RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 388 ~RI~r~l~~k~---~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+|+.+|...+ .+ ..++||+...++...++..||+|.++|+|.-+
T Consensus 17 ~~IL~~L~~~~~~~~~-t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKAT-TAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCE-EHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 56888898888 77 99999999999999999999999999999654
No 29
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.46 E-value=0.59 Score=37.74 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRV 96 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rl 96 (527)
+.--+|...|+.+|+.+..+|++.++++.+.|.+-|-.|.+. +|.. ... + + ..+|+++.+.+-..+
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~-~~~--g------r-~~~y~l~~~~~~~~~ 92 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKR-NRQ--G------L-EIYYSINNPKVEGII 92 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEE-EEE--T------T-EEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhh-eEe--C------c-EEEEEEChHHHHHHH
Confidence 555678888899999999999999999999999999999999 8873 322 1 1 478999987765444
No 30
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.45 E-value=0.36 Score=37.33 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcC---CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~G---~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
-.+|..+|...| +.|..+|++..+++.+.|..-|-.|.+-|+|.
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 377889999999 99999999999999999999999999999997
No 31
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=91.41 E-value=0.84 Score=38.04 Aligned_cols=71 Identities=8% Similarity=0.080 Sum_probs=54.4
Q ss_pred HHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 13 VITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 13 ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
+++-.=.+.--+|...|. .|+++..+|++.++++.+.|..-|-.|...|+|.. ... + ...+|+++.+.+
T Consensus 11 ~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~-~~~--g-------r~~~y~l~~~~~ 79 (118)
T 3f6o_A 11 IFQALADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRT-HKQ--G-------RVRTCAIEKEPF 79 (118)
T ss_dssp HHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEE-EEE--T-------TEEEEEECSHHH
T ss_pred HHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEE-Eec--C-------CEEEEEECHHHH
Confidence 333333466677777776 79999999999999999999999999999999983 222 1 157899997665
Q ss_pred HH
Q 009725 93 LH 94 (527)
Q Consensus 93 l~ 94 (527)
-.
T Consensus 80 ~~ 81 (118)
T 3f6o_A 80 TA 81 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 32
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.15 E-value=2.1 Score=34.20 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.+.-..|..+|..+|++|..+|++.++++...|...|-.|.+.|+|...
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3666778899988999999999999999999999999999999999843
No 33
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=90.77 E-value=0.75 Score=40.94 Aligned_cols=139 Identities=13% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHHHHHccchhhhcccccCCCccChHHHHHHhhhcccCCCCCHHHHHHHHHHhccC-----C-C-CCCCCCcEEEehH
Q 009725 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL-----S-F-VDASSDSYSIDFE 364 (527)
Q Consensus 292 ~v~~~~L~~~~~~~~~~~~~~s~p~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~-----~-~-~~~~~~~y~V~~~ 364 (527)
.+++|+|-.+ ..|+|..+|.+.+. .....+.+...|..|..+ . + .-.-+|.|.+-.+
T Consensus 10 ~~iEAlLf~~-----------~~pvs~~~La~~~~-----~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~ 73 (162)
T 1t6s_A 10 RSLEALIFSS-----------EEPVNLQTLSQITA-----HKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTE 73 (162)
T ss_dssp HHHHHHHHHC-----------SSCBCHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHc-----------CCCCCHHHHHHHhC-----cCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEc
Confidence 4577777765 34799999998883 124556677777766543 1 1 1233456766554
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCce
Q 009725 365 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ 444 (527)
Q Consensus 365 ~i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t 444 (527)
.-..-.-...+..--..++...+..++.++.-++-. .--+|++.-.++ +..++.+|...|+| .|+++...|+|
T Consensus 74 ~~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay~qPi-TR~eI~~irGv~---~~~~v~~L~e~glI--~e~g~~~~~GR- 146 (162)
T 1t6s_A 74 PEFADLVRQLLAPVIQRRLSRSMLEVLAVVAWHQPV-TKGEIQQIRGAS---PDYSIDRLLARGLI--EVRGRADSPGR- 146 (162)
T ss_dssp GGGHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSE-EHHHHHHHHTCC---CCSHHHHHHHTTSE--EEEEECSSTTC-
T ss_pred HHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCC---HHHHHHHHHHCCCE--EEccccCCCCC-
Confidence 444333333333333457888889999999887666 999999999998 77899999999999 45665446788
Q ss_pred EEEEEEchH
Q 009725 445 FLLWKVNRQ 453 (527)
Q Consensus 445 ~~lw~v~~~ 453 (527)
-++|.++..
T Consensus 147 p~ly~tT~~ 155 (162)
T 1t6s_A 147 PLQYGTTEV 155 (162)
T ss_dssp CEEEEECHH
T ss_pred CeEEEECHH
Confidence 677777644
No 34
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.75 E-value=0.28 Score=38.21 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHH-HHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDE-QVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~-~Vr~~L~vLiQhn~V~ 65 (527)
+.-.+|..+|..+|++|..+|++..+++.. .|+.-|..|-.-|+|.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 567899999999999999999999999998 9999999999999998
No 35
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=90.69 E-value=2.8 Score=37.32 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=93.2
Q ss_pred chhHHHHHHHHHhc-------CCCCHHHHHhhc----------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCc
Q 009725 19 GDLVAKVCECLLRK-------GPLTRQNVKRYT----------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKA 81 (527)
Q Consensus 19 G~~v~~V~~~Ll~~-------G~~tl~~i~~~t----------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~ 81 (527)
-+.-++|..+|+.+ -++||..|...+ +++...|..+|=.|...++|.- .. + .+
T Consensus 23 s~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~~--~~--g-----sR- 92 (183)
T 3bz6_A 23 NSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRL--VM--G-----SR- 92 (183)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEE--EC--C-----SS-
T ss_pred CHHHHHHHHhhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeEe--ec--C-----Cc-
Confidence 34566777777754 588999997664 4788999999999999999962 22 1 12
Q ss_pred ceEEEeehhhHHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcc
Q 009725 82 NTQYVVLFDNILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAH 161 (527)
Q Consensus 82 ~~~Y~~~~~~il~rlR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~ 161 (527)
+..|+=+..+. -.+......|+-.||..|-.|+.++-.+..--. +..+.++++..+..|+...
T Consensus 93 v~Ky~Hr~~~~--------------l~l~~~e~All~~LlLRGpQT~GELRtRs~Rl~---~F~d~~~Ve~~L~~L~~r~ 155 (183)
T 3bz6_A 93 ADRWEHKVDKG--------------LELVPAQVILTGLLLLRGPQTVSELLTRSNRMH---DFEDSEQVVHQLERLIARG 155 (183)
T ss_dssp CCEEEECHHHH--------------HTCCHHHHHHHHHHHHHCSBCHHHHHHHHTTTS---CCSSHHHHHHHHHHHHHHT
T ss_pred cHHHHcccchh--------------cCCCHHHHHHHHHHHhcCCCChhHHHHhHhhcc---ccCCHHHHHHHHHHHhcCC
Confidence 57898777652 235566788999999999999999988864321 2447889999999999999
Q ss_pred cceecC
Q 009725 162 YVERCP 167 (527)
Q Consensus 162 ~i~~v~ 167 (527)
++..+|
T Consensus 156 lv~~Lp 161 (183)
T 3bz6_A 156 LATLVP 161 (183)
T ss_dssp SEEEEC
T ss_pred ceeecC
Confidence 988886
No 36
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=90.05 E-value=0.89 Score=39.92 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHH
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILH 94 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~ 94 (527)
.+.--+|...|. .|++|..+|+..++++.+.|..-|-+|...|+|.. ... + + ..+|.++...+-.
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~-~~~--G------r-~~~y~lt~~~~~~ 121 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTP-RKD--G------R-FRYYRLDPQGLAQ 121 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEECHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-Eec--C------C-EEEEEEChHHHHH
Confidence 355667777776 89999999999999999999999999999999983 322 1 1 4789999765443
No 37
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=89.67 E-value=1.7 Score=48.51 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=86.5
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehh--hHHHHhchhhH--------
Q 009725 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD--NILHRVRFAKF-------- 101 (527)
Q Consensus 32 ~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~--~il~rlR~p~~-------- 101 (527)
.+.+|+.+|...|+++...++.+|..|++++++.. .++...+.+..-.....|.+|.+ .-..+++.|..
T Consensus 601 ~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~~-~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e 679 (760)
T 1ldj_A 601 EDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVL-EDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQE 679 (760)
T ss_dssp SSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEEC-SCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCccee-CCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchh
Confidence 46789999999999999999999999999998862 22100000000111245777754 22233333210
Q ss_pred ----HHHHH-HHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 102 ----LTILS-QEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 102 ----i~~i~-~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
-..|. ++--..-|.||..+=....++-.+++..+.+....-=..+...|+.++..|++.+||+|.+
T Consensus 680 ~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~ 750 (760)
T 1ldj_A 680 QETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 750 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred hhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCC
Confidence 01111 1111235677787888899998999888765322111236788999999999999999985
No 38
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=89.55 E-value=5.5 Score=34.27 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=63.4
Q ss_pred cCCchHHHHHHH-HHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHHH
Q 009725 383 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD 461 (527)
Q Consensus 383 ~G~~~~RI~r~l-~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~~ 461 (527)
+...-.+|+..| ...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++ ++... -..+++
T Consensus 45 l~~~~~~iL~~L~~~~~~~-~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~---~d~R~~~~-~lT~~--G~~~~~ 117 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGL-SMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA---DDRRSFSA-KLTDA--GLTTFK 117 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCE-EHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-----------CEE-EECHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC---CCCCeEEE-EEChh--HHHHHH
Confidence 334456788888 455666 99999999999999999999999999999654333 22444443 34432 223334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccccccCChhhHHHHHHHHHHHHHHHHHHhhh
Q 009725 462 EMFHAALNLSLRVSYELDREKELLNLPADKRTGPLQDRYNRIRKVRILLESSQMKL 517 (527)
Q Consensus 462 ~~yk~~~nl~~R~~~e~~~~k~ll~k~~~~~~~~e~~~l~~~~~~~~~L~~~~~rl 517 (527)
.+......... .++. ..+++|.+.+.++-..........+++
T Consensus 118 ~~~~~~~~~~~----------~~~~----~l~~~e~~~l~~~l~~l~~~l~~~~~~ 159 (160)
T 3boq_A 118 QASEAHNRILA----------ELLR----AVSDQDMVEASAALRGILESMQTGASL 159 (160)
T ss_dssp HHHHHHHHHHH----------HHTT----TCCHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHH----------HHHh----cCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 44333322221 1221 235677776666555555444444443
No 39
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.48 E-value=6.5 Score=33.17 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=46.6
Q ss_pred HHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 23 AKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 23 ~~V~~~Ll~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
-.|..+|.. +|++|..+|++.++++...|...|-.|.+.|+|.....+. + .+ ..+|.+...+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~-d-----~R-~~~~~lT~~G 100 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ-D-----GR-RTRVSLSSEG 100 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-------------CCEEEECHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCC-C-----CC-ceeeEECHHH
Confidence 457777777 8999999999999999999999999999999998433322 1 12 3456666554
No 40
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=89.42 E-value=0.35 Score=37.07 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
-+|+..|.+-|+-+...+|++.+.++.|++-+.|++|-++|.|.
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 47889999989888999999999999999999999999999983
No 41
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.90 E-value=0.17 Score=38.85 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 398 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 398 ~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
|..+...+||+.-.++.+++...||.|++.|+|..+
T Consensus 27 ~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 27 NDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp TCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 453488999999999999999999999999999766
No 42
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=88.89 E-value=0.81 Score=35.38 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhc--CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~--G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+-=..|..+|..+ |++|..+|.... +++...|...|-.|.+.|+|...
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 4445688888876 689999999988 89999999999999999999843
No 43
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.81 E-value=1.1 Score=34.88 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcC---CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 21 LVAKVCECLLRKG---PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 21 ~v~~V~~~Ll~~G---~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.-.+|...|...| ++|..+|++..+++.+.|+..|..|..-|+|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3467888999999 99999999999999999999999999999997
No 44
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=88.80 E-value=0.51 Score=35.26 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCC-cccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVE-KKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 450 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~-~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v 450 (527)
-+|+++|..+|.= .-=.|++...|. +|++-..||.|.+.|.+.+ +.. .+.+.+|-|.+
T Consensus 13 e~I~~fL~~~Gp~-~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~---Dek-~~~W~iy~~~~ 71 (72)
T 3eyi_A 13 EDIYRFLKDNGPQ-RALVIAQALGMRTAKDVNRDLYRMKSRHLLDM---DEQ-SKAWTIYRWTI 71 (72)
T ss_dssp HHHHHHHHHHCSE-EHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEE---CTT-TCEEEEC----
T ss_pred HHHHHHHHHcCCc-hHHHHHHHhCcchhhhcCHHHHHHHHccCcCC---CCC-CCceeEEEeee
Confidence 4799999988877 778888877766 7899999999999999955 111 67788998865
No 45
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=88.78 E-value=1.8 Score=37.47 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhchhhH
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKF 101 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~ 101 (527)
=..|-++|- .|+.|..+|++.+|+|.++++..|.+|-.-|+|.-.... ...+.-++.+ .|
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~G----------K~ayw~L~~s---------~y 72 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFG----------NVALVCLSMD---------QY 72 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEET----------TEEEEESCHH---------HH
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEc----------cEEEEEecHH---------HH
Confidence 356778888 999999999999999999999999999999999743322 1456666544 33
Q ss_pred HHHHHHHhhhhHHHHHHHHHHccc--CCHHHHHHHhhhc
Q 009725 102 LTILSQEFDQQCVELVQGLLEHGR--LTLKQMFDRAKSS 138 (527)
Q Consensus 102 i~~i~~~yG~~a~~I~~~lL~~G~--~~~~~li~~~~~~ 138 (527)
++.|.+ --.++...|-.+|. ++++++..-+..+
T Consensus 73 ~~kV~d----ilrel~~~l~s~gvk~i~p~~l~~li~~d 107 (165)
T 2vxz_A 73 RQLVDG----MIREVERLVTTNKLKFISPPRLHDLIIKD 107 (165)
T ss_dssp HHHHHH----HHHHHHHHHHHTTCSEECHHHHHHHHHHS
T ss_pred HHHHHH----HHHHHHHHHHHcCCeeeCcHHHHHHHHhC
Confidence 333322 22344444444553 5678877766543
No 46
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=88.57 E-value=2.3 Score=36.07 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=42.1
Q ss_pred hhHHHHHHHHH-hcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLL-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll-~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+....|...|. ..|++|..+|++.++++++.|...|-.|.+.|+|...
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 55666777775 5799999999999999999999999999999999843
No 47
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.40 E-value=0.67 Score=36.28 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
+++.+|..+|..+| .|..+|++..+++...|++-|-.|.+-|+|.+
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 57788888888777 99999999999999999999999999999984
No 48
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=88.28 E-value=2.2 Score=36.59 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.--.|..+|..+|++|..+|++..+++.+.|...|-.|.+.|+|...
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 34457778888899999999999999999999999999999999843
No 49
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=88.25 E-value=6 Score=32.33 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=51.5
Q ss_pred Hhhc-hhHHHHHHHHHhcCCCCHHHHHhhc-CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~~tl~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.+| +..-.|...|. .|+++..+|.+.. +++.+.|-..|-.|.+.|+|.....+. ++...+|++-..+
T Consensus 17 ~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~-------d~r~~~~~LT~~G 86 (112)
T 1z7u_A 17 STINGKWKLSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNE-------LPPRVEYTLTPEG 86 (112)
T ss_dssp HTTCSTTHHHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECC-------SSCEEEEEECHHH
T ss_pred HHHcCccHHHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeEEEEECHhH
Confidence 3444 44456777776 5999999999999 999999999999999999998443332 2225778887664
No 50
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=87.92 E-value=1.5 Score=35.80 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=51.3
Q ss_pred Hhhc-hhHHHHHHHHHhcCCCCHHHHHhhc-CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~~tl~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.+| +..-.|...|. .|++++.+|.+.. +++++.+-..|-.|.+.|+|.-...+. ++..++|++...+
T Consensus 9 ~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~-------d~r~~~y~LT~~G 78 (107)
T 2hzt_A 9 EVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQ-------VPPKVEYELSEYG 78 (107)
T ss_dssp HHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECTTG
T ss_pred HHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeEEEEECccH
Confidence 3444 34445667775 8999999999999 999999999999999999998443332 2225778888654
No 51
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=87.78 E-value=0.82 Score=35.57 Aligned_cols=54 Identities=22% Similarity=0.169 Sum_probs=49.2
Q ss_pred HHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccccc
Q 009725 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTT 69 (527)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~ 69 (527)
++.-|..++.|-+.|..+|.+|+.+|.+.++++...+-.||==|..-|=|. +..
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~-~~~ 56 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGISIPELARKVNLSVESTALAVGWLARENKVV-IER 56 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEE-EEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhccCcee-EEe
Confidence 356799999999999999999999999999999999999999999999887 443
No 52
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=87.41 E-value=1.7 Score=34.73 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=46.0
Q ss_pred CchHHHHHHHHH-hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEch
Q 009725 385 RDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 452 (527)
Q Consensus 385 ~~~~RI~r~l~~-k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~ 452 (527)
..-.+++..+.. .+.+ ...+|++...++...+...|..|.+.|||.-...+.. ..++..++|.+..
T Consensus 21 ~~~~~~l~~l~~~~~~~-t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~-~~gr~~~~~~l~~ 87 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPI-TSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK-KIGRPKYYYSISS 87 (109)
T ss_dssp HHHHHHHHHHHHHCSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--------CCEEEEECT
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC-CCCCCCeeeecCH
Confidence 334455555555 5667 9999999999999999999999999999976544332 3344456666765
No 53
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.40 E-value=3.9 Score=34.17 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+|..+|++|..+|++..+++.+.|...|-.|.+.|+|.....+. ++...+|.+...+
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~-------d~R~~~~~lT~~G 102 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPD-------DGRRLLVSLSPAG 102 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETT-------EEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCC-------CCCeeeeEECHhH
Confidence 4445688888889999999999999999999999999999999998433322 1223556666554
No 54
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.28 E-value=5.9 Score=33.94 Aligned_cols=66 Identities=12% Similarity=0.073 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
.+.-..|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.....+. + +...+|.+....
T Consensus 43 t~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~-d------~R~~~~~lT~~G 108 (154)
T 2eth_A 43 KTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPV-D------RRTYRVVLTEKG 108 (154)
T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTT-T------SSCEEEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCC-C------cceeEEEECHHH
Confidence 34445678888889999999999999999999999999999999998433332 1 223566666554
No 55
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=87.27 E-value=4.1 Score=34.08 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.-..|...|..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. + .+ ..+|.+...+
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d-----~R-~~~~~lT~~G 98 (138)
T 1jgs_A 34 AAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPN-D-----KR-GVLVKLTTGG 98 (138)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT-C-----SS-CEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcc-c-----Cc-eeEeEEChhH
Confidence 4445677888888999999999999999999999999999999998433322 1 12 3556666554
No 56
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.06 E-value=3.8 Score=34.24 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|...|..+|++|..+|++..+++++.|...|-.|.+.|+|...
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 455667888888999999999999999999999999999999999843
No 57
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=87.02 E-value=3.4 Score=34.52 Aligned_cols=65 Identities=8% Similarity=0.048 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|...|..+|++|..+|++..+++++.|...|-.|.+.|+|.....+. ++...+|.+...+
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-------d~r~~~~~lT~~G 97 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN-------DQRETLVYLTKKG 97 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS-------CTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCC-------CCceeEEEECHHH
Confidence 4445678888889999999999999999999999999999999998443332 1223566666554
No 58
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=87.00 E-value=0.82 Score=35.30 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+|+.+|...+.+ ...+|++...++...++..|..|.+.|+|.-
T Consensus 3 ~~Il~~L~~~~~~-s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 3 NEILEFLNRHNGG-KTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHSCCC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3688888777777 9999999999999999999999999999954
No 59
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=86.94 E-value=5 Score=33.59 Aligned_cols=49 Identities=6% Similarity=0.047 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHhcC--CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G--~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.-..|..+|..+| ++|..+|++..++++..|...|-.|.+.|+|....
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 44456778888888 89999999999999999999999999999998433
No 60
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=86.92 E-value=0.96 Score=48.84 Aligned_cols=122 Identities=19% Similarity=0.103 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHh-----cccccccccccCCCCCCCCCcceEEEeehhhHHHHh
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRV 96 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQ-----hn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rl 96 (527)
-..|-.+|..++.+|..+|...++++..+++..|-.|.+ .+++... + ..|.++.+ ++..+
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~-----g---------~~y~L~~~-~~~~~ 496 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH-----D---------GVWLLGNA-CREIL 496 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE-----T---------TEEEECHH-HHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe-----C---------CEEEECHH-HHHHh
Confidence 357888899999999999999999999999999999999 7788621 1 25888854 55554
Q ss_pred ch----hhH-HHHHHHHhhhhH-HHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 97 RF----AKF-LTILSQEFDQQC-VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 97 R~----p~~-i~~i~~~yG~~a-~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.- +.| +.+....- ... ..|++.|-.+|.+|..++.+.+.- +..++...+.+|+..|.|++..
T Consensus 497 ~~~~~~~~~~~~~~~~~~-~~~~~~I~~~l~~~g~it~~di~~l~~l--------s~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 497 RKVEPSPFSPVRYLSTDQ-AELTNAAMLWLSEVGDLATSDLMAMCGV--------SRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp TSCC-------------------------------------------------------------------------
T ss_pred cccccccccccccccCCh-hHHHHHHHHHHHHcCCcCHHHHHHHHCC--------CHHHHHHHHHHHHHCCcEEEeC
Confidence 32 233 11111111 122 456666778999999999887642 4556799999999999998764
No 61
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=86.85 E-value=5.7 Score=33.39 Aligned_cols=65 Identities=6% Similarity=-0.037 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|...|..+|++|..+|++..+++++.|...|-.|.+.|+|.....+. ++...+|.+...+
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~-------d~R~~~~~lT~~G 93 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDAS-------NKKIKRIYATEKG 93 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS-------CTTCEEEEECHHH
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCC-------CCceeeeEEChhH
Confidence 4445678888889999999999999999999999999999999998443332 1223566666554
No 62
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.75 E-value=1.6 Score=34.69 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+.-..|...| .|+++..+|++.++++.+.|...|-.|.+.|+|.
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~ 74 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIE 74 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35555677777 7899999999999999999999999999999997
No 63
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.53 E-value=0.77 Score=32.96 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 389 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 389 RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.|+..++.+|..++-..+++.-.++..++-.+|.+|.+.|+|.+.
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeecc
Confidence 466777778887799999999999999999999999999999874
No 64
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.51 E-value=3.9 Score=34.30 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.--.|...|..+|++|..+|++..+++.+.|...|-.|.+.|+|....
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 4455678888888999999999999999999999999999999998543
No 65
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=86.48 E-value=5.6 Score=33.74 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=49.8
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhc-CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
|+..-.|...|. .|++++.+|.+.. +++.+.+-..|-.|.+.|+|.-...+. .+..++|++...+
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~-------d~r~~~y~LT~~G 99 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPV-------VPPHVEYSLTPLG 99 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECS-------SSCEEEEEECHHH
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCC-------CCCeEEEEECccH
Confidence 344445666665 8999999999999 799999999999999999998433322 2235788888665
No 66
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.42 E-value=2.8 Score=35.52 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.=-.|..+|..+| +|..+|++.++++++.|...|-.|.+.|+|....
T Consensus 39 ~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 39 TQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3356777887888 9999999999999999999999999999998433
No 67
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.38 E-value=1.2 Score=34.44 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
..|-+.|-.+|..++.+|++..++++..||.-|-.|.+.|.|.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 567888999999999999999999999999999999999999743
No 68
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.37 E-value=6.5 Score=33.04 Aligned_cols=65 Identities=14% Similarity=0.092 Sum_probs=49.2
Q ss_pred hhHHHHHHHH-HhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~L-l~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+| ..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. + +...+|.+...+
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~-d------~R~~~~~lT~~G 102 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAE-D------RRAKHIVLTPKA 102 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBT-T------BCSCEEEECTTH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCc-c------cCeeeeEECHhH
Confidence 4445677777 678999999999999999999999999999999998433332 1 123456666543
No 69
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.04 E-value=4.9 Score=33.84 Aligned_cols=65 Identities=8% Similarity=0.047 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|.....+. ++...+|.+...+
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~-------d~r~~~~~lT~~G 97 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPA-------DRRAYFLVITRKG 97 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT-------EEEEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCC-------CCceEEEEECHHH
Confidence 4455677888889999999999999999999999999999999998433322 1223456666554
No 70
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=85.96 E-value=5.9 Score=34.18 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|.....+. + .+ ..+|.+...+
T Consensus 52 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~-d-----~R-~~~~~lT~~G 116 (162)
T 3cjn_A 52 TAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSD-D-----QR-SSRVYLTPAG 116 (162)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---C-----CS-SEEEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCC-C-----CC-eeEEEECHHH
Confidence 4445678888889999999999999999999999999999999998433322 1 22 3566666544
No 71
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=85.89 E-value=4.7 Score=33.33 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcC----CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHH
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHR 95 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~----l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~r 95 (527)
+.=..|-.+|-.+|++|..+|+..++ ++++.|...|-.|.+.|+|.. ..+ .+ ...|.+....--
T Consensus 10 ~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R-~~~--------~r-~~~~~~~~~~~~-- 77 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR-YKS--------EN-IYFYSSNIKEDD-- 77 (126)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEE-EEE--------TT-EEEEEECSCHHH--
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEE-EeC--------CC-eEEEEEecCHHH--
Confidence 33446888999999999999999875 689999999999999999984 332 12 234554333211
Q ss_pred hchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHH
Q 009725 96 VRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131 (527)
Q Consensus 96 lR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~l 131 (527)
......-..+...|+.....++..++....++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (126)
T 1sd4_A 78 IKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEI 113 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCHHHH
Confidence 011223345555666666777888887677776665
No 72
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=85.76 E-value=8 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.043 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|. +|++|..+|++.++++++.|...|-.|.+.|+|...
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 34445667777 999999999999999999999999999999999843
No 73
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=85.51 E-value=6.5 Score=33.19 Aligned_cols=65 Identities=15% Similarity=0.080 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+|..+|++|..+|++..++++..|-..|-.|.+.|+|.....+. ++-..+|.+-..+
T Consensus 31 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~-------D~R~~~~~LT~~G 95 (145)
T 3g3z_A 31 YNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQ-------DRRKRLLSLTETG 95 (145)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSS-------CGGGSCEEECHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCC-------CCceeeeeEChhH
Confidence 3445677888889999999999999999999999999999999998433322 1223556666554
No 74
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.43 E-value=9.8 Score=31.55 Aligned_cols=51 Identities=14% Similarity=0.208 Sum_probs=44.1
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
..-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-|
T Consensus 29 ~~~~~iL~~l~~~~~~-~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 29 DAQVACLLRIHREPGI-KQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp HHHHHHHHHHHHSTTC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 4457888888887777 99999999999999999999999999999765433
No 75
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.43 E-value=2.8 Score=36.30 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE-Eec-cC--CCCceEEEEEEchH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK-LVV-TG--ARQSQFLLWKVNRQ 453 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE-vpk-t~--~~~~t~~lw~v~~~ 453 (527)
-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.-.- +.. .. .+-..|..|.++..
T Consensus 10 d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 79 (152)
T 2cg4_A 10 DRGILEALMGNART-AYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSA 79 (152)
T ss_dssp HHHHHHHHHHCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCC
Confidence 35789999887888 999999999999999999999999999997432 222 22 33446777787754
No 76
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.37 E-value=13 Score=31.34 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=43.5
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 38 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGA-TAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 334457888888887777 99999999999999999999999999999664
No 77
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=85.27 E-value=6.3 Score=33.40 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|....
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3445677788888999999999999999999999999999999998433
No 78
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.17 E-value=7.3 Score=33.20 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=48.9
Q ss_pred HcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEE
Q 009725 382 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLL 447 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~l 447 (527)
-+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-..-| ...|..++
T Consensus 34 ~l~~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~---~d~R~~~~ 95 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSL-KVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT---KDRRVIDL 95 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS---SCTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC---CCCceEEE
Confidence 3445567889998887777 99999999999999999999999999999765333 23454444
No 79
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=84.99 E-value=0.98 Score=34.66 Aligned_cols=55 Identities=24% Similarity=0.293 Sum_probs=50.1
Q ss_pred HHhhchhHHHHHHHHHhcCCCCHHHHHhhcCC-CHHHHHHHHHHHHhcccccccccc
Q 009725 15 TNHFGDLVAKVCECLLRKGPLTRQNVKRYTEL-SDEQVKNALLVLIQQNCVQAFTTE 70 (527)
Q Consensus 15 ~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l-~~~~Vr~~L~vLiQhn~V~~~~~~ 70 (527)
.+..|..++.|-+.|...|.+|+.+|.+.+++ +...+-.||==|..-|=|. |...
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~-~~~~ 60 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLREDKVV-TSEV 60 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEE-EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceE-EEee
Confidence 46789999999999999999999999999999 9999999999999999887 4443
No 80
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=84.94 E-value=2.5 Score=38.96 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHH
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (527)
++.--.|...| ..|+++..+|.+.++++.+.|...|-.|...|+|.....+.++ .+...+|+++.+...
T Consensus 14 ~~~rl~IL~~L-~~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~-----g~~~~~Y~Lt~~~~~ 82 (202)
T 2p4w_A 14 NETRRRILFLL-TKRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPR-----GRPRKYYMIKKGLRL 82 (202)
T ss_dssp SHHHHHHHHHH-HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTT-----BCCCEEEEECTTEEE
T ss_pred CHHHHHHHHHH-HhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCC-----CCceEEEEEChHHHH
Confidence 35666677776 6899999999999999999999999999999999853332111 122467887765443
No 81
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.91 E-value=3.2 Score=35.04 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|..+|..+|++|..+|++..++++..|...|-.|.+.|+|.....+. + +...+|.+...+
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~-d------~R~~~~~lT~~G 101 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEV-D------QREVFIHLTDKS 101 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSS-S------TTCEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCC-C------cceEEEEEChHH
Confidence 4445677888888999999999999999999999999999999998433222 1 224566666554
No 82
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=84.78 E-value=9 Score=30.92 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
-.+|+.+| ..|.+ ...+|++...++...+...|..|.+.|+|.-..- ++ ...|++....
T Consensus 23 r~~IL~~L-~~~~~-~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~------gr-~~~y~l~~~~ 81 (114)
T 2oqg_A 23 RWEILTEL-GRADQ-SASSLATRLPVSRQAIAKHLNALQACGLVESVKV------GR-EIRYRALGAE 81 (114)
T ss_dssp HHHHHHHH-HHSCB-CHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSHH
T ss_pred HHHHHHHH-HcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec------CC-EEEEEechHH
Confidence 46789988 66787 9999999999999999999999999999965422 23 4456666553
No 83
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.73 E-value=3.8 Score=34.54 Aligned_cols=61 Identities=8% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+.-| ...|..++.
T Consensus 36 ~~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~---~d~R~~~~~ 96 (142)
T 2bv6_A 36 TYPQFLVLTILWDESPV-NVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSE---VDQREVFIH 96 (142)
T ss_dssp CHHHHHHHHHHHHSSEE-EHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECS---SSTTCEEEE
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC---CCcceEEEE
Confidence 34457788888877777 99999999999999999999999999999765333 235555443
No 84
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=84.61 E-value=3.7 Score=35.59 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHHHHHHHHH
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHAA 467 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~~~~yk~~ 467 (527)
.+|+++|. .|.. ..-+|++...++-..|+-.||.|.++|.|. ||.++ -.=+|.++.+. +...+.++.+.+
T Consensus 14 ~~ILE~Lk-~G~~-~t~~Iak~LGlShg~aq~~Ly~LeREG~V~--~Vk~G-----K~ayw~L~~s~-y~~kV~dilrel 83 (165)
T 2vxz_A 14 RDILALLA-DGCK-TTSLIQQRLGLSHGRAKALIYVLEKEGRVT--RVAFG-----NVALVCLSMDQ-YRQLVDGMIREV 83 (165)
T ss_dssp HHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSCE--EEEET-----TEEEEESCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCc-cHHHHHHHhCCcHHHHHHHHHHHHhcCceE--EEEEc-----cEEEEEecHHH-HHHHHHHHHHHH
Confidence 46888887 7999 999999999999999999999999999994 45554 23478888664 444666666666
Q ss_pred HHHH
Q 009725 468 LNLS 471 (527)
Q Consensus 468 ~nl~ 471 (527)
..++
T Consensus 84 ~~~l 87 (165)
T 2vxz_A 84 ERLV 87 (165)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 85
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.47 E-value=1.4 Score=34.88 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
..|-++|-.+|..++.+|++..+++...||.-|-.|.+.|.|.-.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 467888999999999999999999999999999999999999854
No 86
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=84.45 E-value=0.98 Score=35.11 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=50.2
Q ss_pred HHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEE
Q 009725 380 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 435 (527)
Q Consensus 380 ~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEv 435 (527)
.+..|..|..||++|-..+.+ +-++|.+.+.++.+++--.+-=|.++|=|.+++.
T Consensus 3 k~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~~ 57 (82)
T 2l02_A 3 KKIVGANAGKVWHALNEADGI-SIPELARKVNLSVESTALAVGWLARENKVVIERK 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHHCCSB-CHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccCCC-CHHHHHHHhCCCHHHHHHHHHHHhccCceeEEee
Confidence 356788999999999988766 9999999999999999999999999999999974
No 87
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=84.39 E-value=6.8 Score=32.97 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|++|..+|++.+++++..|-..+-.|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 344457778888899999999999999999999999999999999843
No 88
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=84.38 E-value=3.8 Score=33.24 Aligned_cols=64 Identities=9% Similarity=0.066 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcC-CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~-l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+..-.|...|. .|++++.+|.+..+ ++.+.+-..|-.|.+.|+|.-...+. ++..++|++...+
T Consensus 25 ~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~-------d~r~~~y~LT~~G 89 (107)
T 2fsw_A 25 KWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPE-------VPPRVEYSLTPLG 89 (107)
T ss_dssp SSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECHHH
T ss_pred ccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCC-------CCCeeEEEECccH
Confidence 44445667775 89999999999995 99999999999999999998433322 2235788888764
No 89
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=84.34 E-value=6.5 Score=32.30 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcC----CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHH
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHR 95 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~----l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~r 95 (527)
+.-..|..+|..+|++|..+|++..+ ++++.|...|-.|.+.|+|.... + + + ...|..-.+.--..
T Consensus 10 ~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~-~--~------r-r~~~~~lT~~g~~~ 79 (123)
T 1okr_A 10 SAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK-D--N------K-IFQYYSLVEESDIK 79 (123)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE-E--T------T-EEEEEESSCHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe-c--C------C-eEEEEEecCHHHHH
Confidence 33445777787889999999999987 88999999999999999998433 2 1 1 23443333322111
Q ss_pred hchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHH
Q 009725 96 VRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQM 131 (527)
Q Consensus 96 lR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~l 131 (527)
.......++..++.....++..++....++.+++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ee~ 113 (123)
T 1okr_A 80 --YKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEI 113 (123)
T ss_dssp --HHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCHHHH
Confidence 1233444555565556666777775566776654
No 90
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.10 E-value=11 Score=31.56 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=45.6
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||....-|
T Consensus 31 l~~~~~~iL~~l~~~~~~-~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPK-RPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp CCHHHHHHHHHHHHHCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 445567889999887888 99999999999999999999999999999775433
No 91
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=83.88 E-value=2.1 Score=31.81 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
-.+|-..|...| +++..+|++.+++|.+.|.+.|-.|.+.|+|.
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 346778887764 79999999999999999999999999999986
No 92
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=83.76 E-value=19 Score=30.37 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|++|..+|++.++++.+.|...|-.|.+.|+|...
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 40 VGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 445567888888899999999999999999999999999999999843
No 93
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=83.74 E-value=1.4 Score=36.59 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhc--CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYT--ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t--~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
.+.-.+|...|..+|++|..+|+... +++...|++-|-.|..+|+|... . . .+|.+....
T Consensus 12 d~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~--------r---g~Y~LT~~G 73 (111)
T 3b73_A 12 TIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL--A--------N---GVYVITEEG 73 (111)
T ss_dssp CHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--S--------T---TCEEECHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--C--------C---ceEEECchH
Confidence 34457788888888999999999999 99999999999999999999842 1 1 179888776
No 94
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=83.57 E-value=6.9 Score=36.41 Aligned_cols=136 Identities=12% Similarity=0.154 Sum_probs=92.1
Q ss_pred HHHHHHHHccchhhhcccccCCCccChHHHHHHhhhcccCCCCCHHHHHHHHHHhccC-----C-C-CCCCCCcEEEehH
Q 009725 292 NVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGEL-----S-F-VDASSDSYSIDFE 364 (527)
Q Consensus 292 ~v~~~~L~~~~~~~~~~~~~~s~p~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~-----~-~-~~~~~~~y~V~~~ 364 (527)
.+++|+|-.. ..|++..+|.+.+. ...+.+...|..|..+ . + ...-+|.|.+-.+
T Consensus 18 ~~iEAlLf~a-----------~epvs~~~La~~l~-------~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~ 79 (219)
T 2z99_A 18 RVLEALLLVI-----------DTPVTADALAAATE-------QPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTR 79 (219)
T ss_dssp HHHHHHHHHC-----------SSCBCHHHHHHHHT-------SCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHc-----------CCCCCHHHHHHHHC-------cCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEc
Confidence 4677777764 34799999988873 2344566666655432 1 1 1233566776655
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCce
Q 009725 365 KIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQ 444 (527)
Q Consensus 365 ~i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t 444 (527)
.-..-.-.+.+..--..++...+..++.++.-++-+ .--+|++.-.+.. -.++.+|...|+|. |+.+...++
T Consensus 80 ~e~~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPI-TR~eI~~irGv~~---~~~v~~Lle~gLI~--e~Gr~~~~G-- 151 (219)
T 2z99_A 80 ARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPV-TRARVSAVRGVNV---DAVMRTLLARGLIT--EVGTDADTG-- 151 (219)
T ss_dssp GGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCC---HHHHHHHHHTTSEE--EEEECTTTC--
T ss_pred HHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCc-CHHHHHHHHCCCH---HHHHHHHHHCCCEE--EccccCCCC--
Confidence 544444344444333457888899999999887666 9999999999986 57999999999994 455543444
Q ss_pred EEEEEEchH
Q 009725 445 FLLWKVNRQ 453 (527)
Q Consensus 445 ~~lw~v~~~ 453 (527)
-++|.++..
T Consensus 152 p~ly~tT~~ 160 (219)
T 2z99_A 152 AVTFATTEL 160 (219)
T ss_dssp CEEEEECHH
T ss_pred CeEEEECHH
Confidence 567887755
No 95
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=83.47 E-value=13 Score=32.03 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=49.3
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
+...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.
T Consensus 44 lt~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~ 105 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNL-SNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPT---HGRRILVT 105 (162)
T ss_dssp CCHHHHHHHHHHHHCTTC-CHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCS---SSCCEEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCC---cCCeeEeE
Confidence 344556888888887887 999999999999999999999999999997654333 35555443
No 96
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=83.19 E-value=4.8 Score=34.52 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEE--eccC--CCCceEEEEEEchHH
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL--VVTG--ARQSQFLLWKVNRQI 454 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEv--pkt~--~~~~t~~lw~v~~~~ 454 (527)
.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|.-.-. .... .+-..+..|.++...
T Consensus 8 ~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 77 (144)
T 2cfx_A 8 LNIIEELKKDSRL-SMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNAD 77 (144)
T ss_dssp HHHHHHHHHCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECccc
Confidence 4789999887888 9999999999999999999999999999974322 1121 344567778888764
No 97
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.18 E-value=9.7 Score=31.72 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=45.5
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||....-|
T Consensus 34 lt~~~~~iL~~l~~~~~~-t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEM-ESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 445567889999887887 99999999999999999999999999999765433
No 98
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=83.15 E-value=6.9 Score=33.69 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
+.--.|...|..+|++|..+|++.++++...|...|-.|.+.|+|..
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r 95 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRR 95 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 34456778888899999999999999999999999999999999984
No 99
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=83.14 E-value=11 Score=31.23 Aligned_cols=60 Identities=20% Similarity=0.412 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
..-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..-| ...|..++.
T Consensus 33 ~~~~~iL~~l~~~~~~-~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~---~d~r~~~~~ 92 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKV-SMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNP---NDQRETLVY 92 (139)
T ss_dssp HHHHHHHHHHHHSCSE-EHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECS---SCTTCEEEE
T ss_pred HHHHHHHHHHHHcCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCC---CCCceeEEE
Confidence 4456788888887777 99999999999999999999999999999765333 235555544
No 100
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=83.01 E-value=2.9 Score=35.71 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=51.2
Q ss_pred Hhhc-hhHHHHHHHHHhcCCCCHHHHHhhc-CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 16 NHFG-DLVAKVCECLLRKGPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 16 ~~FG-~~v~~V~~~Ll~~G~~tl~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.+| ...-.|...|. .|++++.+|.+.. +++.+.+-..|-.|.+.|+|.--..+. .+..+.|++-..+
T Consensus 21 ~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~-------d~r~v~y~LT~~G 90 (131)
T 4a5n_A 21 DVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQ-------VPPKVEYSLTEFG 90 (131)
T ss_dssp HHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS-------SSCEEEEEECTTG
T ss_pred HHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCC-------CCCeEEEEECHhH
Confidence 4454 44555666665 8999999999999 999999999999999999998322221 2235788887654
No 101
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.94 E-value=10 Score=31.65 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcC--CCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G--~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+| ++|..+|++.+++++..|-..+-.|.+.|+|...
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 44566788888886 9999999999999999999999999999999843
No 102
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=82.90 E-value=1.2 Score=33.22 Aligned_cols=44 Identities=25% Similarity=0.372 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
.+|+.+|...+.-+.-.+|++..-+|...+.+.+..|.++|||.
T Consensus 13 ~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 13 QKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 36888887765434999999999999999999999999999973
No 103
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.80 E-value=3.5 Score=34.81 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+.--.|-.+|..+|++|..+|++.++++++.|-..+-.|.+.|+|.....+. + .+ ...+.+-..+
T Consensus 36 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~-D-----~R-~~~~~LT~~G 100 (140)
T 3hsr_A 36 YTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEK-D-----ER-NLQISLTEQG 100 (140)
T ss_dssp HHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--------------CEEEECHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCC-C-----cc-eeeeeEChHH
Confidence 3334566777778999999999999999999999999999999998433332 1 12 3456666554
No 104
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=82.49 E-value=3.8 Score=34.68 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
+.--.|..+|..+|++|..+|++.++++.+.|...|-.|.+.|+|.....+. + +...+|.+...+.
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~-d------~R~~~~~LT~~G~ 105 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEE-D------ERSVLISLTEDGA 105 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSS-C------TTSBEEEECHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCC-C------CCeeEEEECHhHH
Confidence 3345677888888999999999999999999999999999999998433322 1 2235666665543
No 105
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=82.43 E-value=11 Score=32.44 Aligned_cols=62 Identities=15% Similarity=0.358 Sum_probs=48.6
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-..-| ...|..++.
T Consensus 48 lt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~---~DrR~~~l~ 109 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGI-NQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDE---KDRRSYRVF 109 (159)
T ss_dssp CCTTTHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC------CCEEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC---CCCCeeEEE
Confidence 445568899999887787 99999999999999999999999999999665333 335555554
No 106
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=82.39 E-value=15 Score=31.18 Aligned_cols=47 Identities=6% Similarity=0.009 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
+.--.|..+|..+|++|..+|++.++++++.|-..|-.|.+.|+|..
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44456788888899999999999999999999999999999999984
No 107
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=82.38 E-value=20 Score=30.22 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|++|..+|++.+++++..|...|-.|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 37 PAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 444567788888899999999999999999999999999999999843
No 108
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=82.35 E-value=12 Score=31.94 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
..--.|..+|..+|++|..+|++.++++...|...|-.|.+.|+|...
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 444567777878899999999999999999999999999999999843
No 109
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.15 E-value=9 Score=33.42 Aligned_cols=47 Identities=9% Similarity=0.074 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
..--.|..+|..+|++|..+|++.++++...|-..|-.|.+.|+|..
T Consensus 45 ~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 45 IPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 33446777888889999999999999999999999999999999984
No 110
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.83 E-value=6.4 Score=30.85 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchH
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 453 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~ 453 (527)
.-.+|+..|...+.+ ...+|++...++...+-..|.+|.+.|+|.-...| . .+....|++...
T Consensus 17 ~~~~iL~~L~~~~~~-~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~-~---~~r~~~~~lt~~ 79 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKA-PFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI-A---DRPRTVVEITDF 79 (100)
T ss_dssp HHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC-S---SSCEEEEEECHH
T ss_pred HHHHHHHHHHhcCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC-C---CcceEEEEECHH
Confidence 356789988777777 99999999999999999999999999999766544 2 122444555544
No 111
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=81.82 E-value=2.1 Score=34.09 Aligned_cols=65 Identities=9% Similarity=0.263 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHhC--CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccC-CCCceEEEEEEc
Q 009725 384 GRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVN 451 (527)
Q Consensus 384 G~~~~RI~r~l~~k~--~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~-~~~~t~~lw~v~ 451 (527)
...-..|+++|...| .+ .+++|++..-++...+-.+|-+|.+.|||.- ++... ...+.++||.+.
T Consensus 19 t~~q~~Vl~~I~~~g~~gi-~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr--~~~~~~~~rKvy~Ly~l~ 86 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGI-WSRDVRYKSNLPLTEINKILKNLESKKLIKA--VKSVAASKKKVYMLYNLS 86 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ECCSSCSSCCEEEESSSC
T ss_pred CHHHHHHHHHHHHcCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCCCCCCcEEEEEeccC
Confidence 344567899998744 67 9999999999999999999999999999942 22222 445666666544
No 112
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=81.54 E-value=2.6 Score=32.50 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=40.4
Q ss_pred HHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 114 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..|++.|-.+|.++++++.+.+.- +...|+.-+..|.+.|+|.|++
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~V--------S~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNT--------PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTC--------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc--------CHHHHHHHHHHHHHCCCEEEec
Confidence 468888889999999999988743 6778999999999999999993
No 113
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=81.49 E-value=10 Score=31.64 Aligned_cols=60 Identities=13% Similarity=0.066 Sum_probs=47.4
Q ss_pred CchHHHHHHHHHhC--CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 385 RDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 385 ~~~~RI~r~l~~k~--~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
..-.+|+..|...+ .+ ...+|++...++...+...+.+|.+.|||.-+.-|. ..|..++.
T Consensus 34 ~~~~~iL~~l~~~~~~~~-~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~---d~R~~~i~ 95 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEV-LQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGK---DSRQKCLK 95 (141)
T ss_dssp HHHHHHHHHHHHTTTSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS---CTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCc---CCCeeeeE
Confidence 44577888888776 56 999999999999999999999999999997654332 34554443
No 114
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.42 E-value=12 Score=35.45 Aligned_cols=137 Identities=8% Similarity=0.109 Sum_probs=86.7
Q ss_pred HhhchhHH--HHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehh-
Q 009725 16 NHFGDLVA--KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD- 90 (527)
Q Consensus 16 ~~FG~~v~--~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~- 90 (527)
..||=... .|-.+|-.+ |++|..+|....++++..+-..|-.|.+.|+|.--..+.+ .+.. +-.+-..
T Consensus 28 ~~~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~D------rR~~-~i~LT~~G 100 (250)
T 1p4x_A 28 PEVDMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKID------ERNT-YISISEEQ 100 (250)
T ss_dssp TTCSSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSS------TTSE-EEECCHHH
T ss_pred hhcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCC------CCeE-EEEECHHH
Confidence 34553333 466677664 4899999999999999999999999999999984333321 1111 1111110
Q ss_pred -------------------------------hHHHHh----chhhHHHHHHHHhhhh--HHHHHHHHHHcc--cCCHHHH
Q 009725 91 -------------------------------NILHRV----RFAKFLTILSQEFDQQ--CVELVQGLLEHG--RLTLKQM 131 (527)
Q Consensus 91 -------------------------------~il~rl----R~p~~i~~i~~~yG~~--a~~I~~~lL~~G--~~~~~~l 131 (527)
.+.... ..-++...+-..||-. -..|+..|..+| .+++++|
T Consensus 101 ~~~~~~~~~~~~~~~eq~s~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eL 180 (250)
T 1p4x_A 101 REKIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDL 180 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhCCCCCcCHHHH
Confidence 111111 1122223333355533 344666666665 3888888
Q ss_pred HHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 132 FDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 132 i~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.+.+.- +...+...+..|.+.|||.|.+
T Consensus 181 a~~l~i--------~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 181 IETIHH--------KYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHSSS--------CHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHCC--------ChhhHHHHHHHHHHCCCEEeeC
Confidence 777542 5678999999999999999986
No 115
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=81.38 E-value=1.7 Score=44.35 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
..|.+.|..+|++|..+|.+.++|++..|.+.+--|++.|+|.-.....+.+. .+..+.|.+|.+.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~~~~~~~~---GR~~~~l~~~~~~ 84 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELEIKEAGNR---GRPAVGLVVETEA 84 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC----------------CEEECCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeecccCCCCC---CCCCeEEEEcCCc
Confidence 56899999999999999999999999999999999999999974332210111 2234568888764
No 116
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.19 E-value=14 Score=31.04 Aligned_cols=47 Identities=9% Similarity=0.279 Sum_probs=41.7
Q ss_pred hHHHHHHHHH-hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 387 AYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 387 ~~RI~r~l~~-k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
-.+|+..|.. .+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 37 ~~~iL~~l~~~~~~~-~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDV-TPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHTTSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3678888877 7777 999999999999999999999999999997653
No 117
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=80.89 E-value=4.6 Score=34.93 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehh
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (527)
.-.|...|. .|++++.+|.+.++++.+.+-..|-.|.++|+|.-...+. ++ ..+|.+-..
T Consensus 26 ~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~-------d~-~~~y~LT~~ 85 (146)
T 2f2e_A 26 SMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES-------GS-HQEYRLTDK 85 (146)
T ss_dssp HHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS-------SS-CEEEEECHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCC-------CC-eEEEEECch
Confidence 344666664 8999999999999999999999999999999998433321 23 567888744
No 118
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=80.80 E-value=9.8 Score=29.94 Aligned_cols=61 Identities=15% Similarity=0.086 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCCHHHH----HhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 22 VAKVCECLLRKGPLTRQNV----KRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i----~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
--.|...|..+|++|..+| ++..+++.+.|-..|-.|.+.|+|.....+ + ...|.+-..+-
T Consensus 10 q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~---------r-~~~~~LT~~G~ 74 (99)
T 1tbx_A 10 EAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER---------G-EKRLYLTEKGK 74 (99)
T ss_dssp HHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET---------T-EEEEEECHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC---------C-ceEEEECHHHH
Confidence 3457777888899999999 888999999999999999999999832222 1 34676766553
No 119
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=80.73 E-value=5.2 Score=35.00 Aligned_cols=67 Identities=16% Similarity=0.267 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE-EEEec-cC--CCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVV-TG--ARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l-QEvpk-t~--~~~~t~~lw~v~~~~ 454 (527)
-.+|+++|...+.+ .-.+|++...++...++..+.+|.+.|+|.- .-... .. .+-..+..|.++...
T Consensus 12 ~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~ 82 (162)
T 2p5v_A 12 DIKILQVLQENGRL-TNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAK 82 (162)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSST
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCc
Confidence 35789999888888 9999999999999999999999999999973 32222 11 334556777887653
No 120
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.55 E-value=5.9 Score=35.19 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce-EEEEeccC---CCCceEEEEEEchH
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 453 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~-lQEvpkt~---~~~~t~~lw~v~~~ 453 (527)
.+|+++|...+.+ ..++|++...++...++..+.+|.+.|+|. ..-+.... .+ ..+..|.++..
T Consensus 20 ~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~-~a~v~v~~~~~ 87 (171)
T 2ia0_A 20 RNILRLLKKDARL-TISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKH-LALIVLEVGKP 87 (171)
T ss_dssp HHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSE-EEEEEEEESCC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcc-eEEEEEEECCc
Confidence 5789999888888 999999999999999999999999999995 44332222 33 55666677653
No 121
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=80.53 E-value=6.5 Score=33.10 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
+.--.|-.+|..+|++|..+|++.++++++.|-..+-.|.+.|+|..
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r 83 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRR 83 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 45556888888899999999999999999999999999999999984
No 122
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=80.33 E-value=1.4 Score=33.83 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHcCCchHHHHHHHHHhCCCcchhhhhhhcCC-CcccHHHHHHHHHhcccceEEEEec
Q 009725 380 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFV-EKKDAPKILYKLWKDGYLLMEKLVV 437 (527)
Q Consensus 380 ~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami-~~k~~r~~L~~L~~~g~v~lQEvpk 437 (527)
.+..|..|..||++|-..+.+ +-++|.+.+.+ +.+++--.+-=|.++|=|.+.+..+
T Consensus 5 k~~IG~nAG~VW~~L~~~~~~-s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~~~ 62 (77)
T 2l01_A 5 KEKAGALAGQIWEALNGTEGL-TQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEVEG 62 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSSCE-EHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEeeCC
Confidence 466789999999999887666 99999999999 9999999999999999999987644
No 123
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=80.32 E-value=2 Score=43.49 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 24 ~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+|.+.|. +|++|-.+|.+.++|++..|.+.+--|++.|+|.-..... .+. .++.+.|.+|.+.
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~~~-~~~---GR~~~~l~~~~~~ 86 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSP-KGV---GRPTKSLKISPNC 86 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEECCC--------CCCEEEEECGGG
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCC-CCC---CCCceEEEEccCC
Confidence 4788899 9999999999999999999999999999999998543321 111 2334678888874
No 124
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.18 E-value=8.8 Score=32.40 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|++|..+|++.++++++.|...|-.|.+.|+|...
T Consensus 40 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 40 MTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 334467888888999999999999999999999999999999999843
No 125
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=79.96 E-value=7.8 Score=33.38 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=50.5
Q ss_pred EehHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 361 IDFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 361 V~~~~i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-|+.+...-+....+.++.. |+.++...+.+ ...+|++...++...++..|.+|...|||...
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~--------i~~~l~~~~~~-~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 24 EGFRQVREAHRRELIDDYVEL--------ISDLIREVGEA-RQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhhhccccHHHHHHHHH--------HHHHHHhCCCc-CHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 335666666666666666654 77777776777 99999999999999999999999999998543
No 126
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=79.79 E-value=14 Score=31.92 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|-.+|..+|++|..+|++.+++++..|-..|-.|.+.|+|...
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 334467788888999999999999999999999999999999999843
No 127
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=79.75 E-value=13 Score=31.85 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
+...-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+.-|
T Consensus 50 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGL-PIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp CCHHHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 344557888888887777 99999999999999999999999999999765433
No 128
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=79.72 E-value=15 Score=30.59 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=44.7
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 27 lt~~~~~iL~~l~~~~~~-t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGI-IQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp CTTTHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCcCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 445567889999887777 999999999999999999999999999997653
No 129
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=79.42 E-value=15 Score=30.58 Aligned_cols=60 Identities=8% Similarity=-0.008 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHhC--CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 385 RDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 385 ~~~~RI~r~l~~k~--~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
..-.+|+..|...+ .+ ...+|++...++...+-.++.+|.+.|||.-..-|. ..|..++.
T Consensus 31 ~~~~~vL~~l~~~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~---D~R~~~~~ 92 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGL-TQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ---DTRRKNIG 92 (139)
T ss_dssp HHHHHHHHHHHHSTTTCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC-----CCEEEE
T ss_pred HHHHHHHHHHHhcCCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC---CCCeeeeE
Confidence 44578888888775 66 999999999999999999999999999997654333 34544443
No 130
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=79.34 E-value=2.5 Score=32.59 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=38.6
Q ss_pred HHHHHHHHHhc------CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRK------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~------G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
...|.++|-.+ |+.|+.+|+...++++..|+.=|..|.+.|++.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 34566666666 889999999999999999999999999999997
No 131
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=79.26 E-value=2.9 Score=33.02 Aligned_cols=46 Identities=22% Similarity=0.240 Sum_probs=40.4
Q ss_pred HHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 114 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..|++.|-++|.++++++.+.+.- +...|+.-+..|.+.|+|.|+.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~V--------S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQT--------PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTC--------CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCc--------CHHHHHHHHHHHHHCCCEEEEe
Confidence 468888889999999999988742 6778999999999999999984
No 132
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=79.05 E-value=4.4 Score=34.98 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=50.7
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce-EEEEeccC--C-CCceEEEEEEchH
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG--A-RQSQFLLWKVNRQ 453 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~-lQEvpkt~--~-~~~t~~lw~v~~~ 453 (527)
.-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|. ..-+.... + +-..|..|.++..
T Consensus 10 ~d~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~ 80 (151)
T 2dbb_A 10 VDMQLVKILSENSRL-TYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPS 80 (151)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCC
Confidence 345799999887888 999999999999999999999999999996 33322211 2 2335666677654
No 133
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.96 E-value=4 Score=34.90 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|-.+|..+|++|..+|++.+++++..|-..+-.|.+.|+|...
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 444567788888999999999999999999999999999999999843
No 134
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.72 E-value=13 Score=31.29 Aligned_cols=60 Identities=8% Similarity=0.197 Sum_probs=46.4
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
..-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||....-|. ..|..++.
T Consensus 42 ~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---d~R~~~~~ 101 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDL-TVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEH---DRRVVRIR 101 (150)
T ss_dssp HHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC------CEEEE
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCC---CcceeEeE
Confidence 3456788888887887 999999999999999999999999999997654332 24544443
No 135
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.65 E-value=10 Score=32.57 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
--.|-.+|..+|++|..+|++..++++..|-..+-.|.+.|+|...
T Consensus 52 q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 52 QFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3557788888999999999999999999999999999999999843
No 136
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=78.45 E-value=30 Score=29.87 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHhC--CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEE
Q 009725 384 GRDAYRIFRLLSKSG--RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWK 449 (527)
Q Consensus 384 G~~~~RI~r~l~~k~--~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~ 449 (527)
...-++|+.+|...| .+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.-
T Consensus 45 t~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~L 108 (168)
T 3u2r_A 45 SAQQYNTLRLLRSVHPEGM-ATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVAL 108 (168)
T ss_dssp CHHHHHHHHHHHHHTTSCE-EHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeEE
Confidence 345577888887753 66 999999999999999999999999999997654433 355555443
No 137
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=78.33 E-value=9.8 Score=31.58 Aligned_cols=51 Identities=12% Similarity=0.186 Sum_probs=44.4
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||....
T Consensus 36 l~~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPC-PQNQLGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp CCHHHHHHHHHHHHHSSB-CHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 344557899999888877 999999999999999999999999999997653
No 138
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=78.22 E-value=17 Score=30.40 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
...-.+|+..|. .+.+ ...+|++...++...+...+.+|.+.|||.-..-| ...|..++.
T Consensus 36 ~~~~~~iL~~l~-~~~~-~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~---~d~r~~~~~ 95 (146)
T 2gxg_A 36 SYLDFLVLRATS-DGPK-TMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR---EDRRKILIE 95 (146)
T ss_dssp CHHHHHHHHHHT-TSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEE
T ss_pred CHHHHHHHHHHh-cCCc-CHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCC---CCCceEEEE
Confidence 345567888887 6777 99999999999999999999999999999654322 234555443
No 139
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=77.97 E-value=14 Score=30.13 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHhcCCCC--HHHHHhhc-CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 19 GDLVAKVCECLLRKGPLT--RQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~t--l~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
|+..-.|...|. .|+.+ +.+|.+.. +++.+.+-.-|-.|.++|+|.. ... . .++|++...+
T Consensus 26 ~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r-~~~--r--------~~~y~LT~~G 89 (111)
T 3df8_A 26 KKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVER-RSG--Q--------ITTYALTEKG 89 (111)
T ss_dssp STTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEE-EES--S--------SEEEEECHHH
T ss_pred CccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEE-eec--C--------cEEEEECccH
Confidence 344556666665 89888 99999999 8999999999999999999983 222 1 4789988765
No 140
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=77.90 E-value=1.2 Score=44.82 Aligned_cols=76 Identities=12% Similarity=0.037 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHHHHHHHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEMFHA 466 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~~~~yk~ 466 (527)
-+++++.|+..|.. .-.+|++.+.+|...+...|..|.+.|+|..+ .+ .| ..+.-++++.+...+..+.-..
T Consensus 20 ea~vY~~Ll~~g~~-t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~---~g-~p---~~y~av~p~~~l~~l~~~~~~~ 91 (342)
T 3qph_A 20 EILTYWTLLVYGPS-TAKEISTKSGIPYNRVYDTISSLKLRGFVTEI---EG-TP---KVYAAYSPRIAFFRFKKELEDI 91 (342)
T ss_dssp TTSCSHHHHHHHHH-HHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEE---CC-TT---CEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---cC-ce---eEEEEcCHHHHHHHHHHHHHHH
Confidence 35778888888888 99999999999999999999999999999876 12 22 3455788888888877776555
Q ss_pred HHHH
Q 009725 467 ALNL 470 (527)
Q Consensus 467 ~~nl 470 (527)
+.++
T Consensus 92 ~~~L 95 (342)
T 3qph_A 92 MKKL 95 (342)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 141
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=77.78 E-value=1.8 Score=44.58 Aligned_cols=66 Identities=17% Similarity=0.215 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc-cccCCCCCCCCCcceEEEeehhh
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT-TEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~-~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
-..|.+.|..+|++|..+|++.++|++..|.+.+--|++.|+|.... ..... . .+..+.|.+|.+.
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~~~~~s~-~---GR~~~~l~~~~~~ 107 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETTVQEAIS-R---GRPAVGLQTNNLG 107 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECHHHHHH-H---TSCCEEEEECCTT
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccccCCCC-C---CCCCeEEEECCCC
Confidence 35689999999999999999999999999999999999999998543 21111 1 2234678888664
No 142
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=77.62 E-value=2.4 Score=35.74 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..|.+|+..|... +..+..++|++..-+|...++++|..|.+.|||...
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 4578898888764 344499999999999999999999999999998543
No 143
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.30 E-value=8 Score=32.17 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|-.+|..+ |++|..+|++..+++++.|-..|-.|.+.|+|...
T Consensus 37 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 37 FEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3344577778888 89999999999999999999999999999999843
No 144
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=77.17 E-value=3.1 Score=35.40 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.+|...|...|++|..+|++..+++.+.|+..|-.|.+.|+|..+
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467777888899999999999999999999999999999999643
No 145
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=77.09 E-value=26 Score=29.37 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..|...+-..|++|..+|++..+++++.|...|-.|.+.|+|.
T Consensus 11 ~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~ 53 (142)
T 1on2_A 11 EQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLI 53 (142)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3344445567999999999999999999999999999999997
No 146
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=76.99 E-value=14 Score=31.85 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=48.3
Q ss_pred HcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 382 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
-+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-..-| ...|..++.
T Consensus 50 glt~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~---~DrR~~~~~ 112 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYGEL-TVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD---ADQRKRTVV 112 (161)
T ss_dssp TCCHHHHHHHHHHHHHSEE-EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCSCEEE
T ss_pred CCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc---ccCCeeEee
Confidence 3455567888888888887 99999999999999999999999999999554332 334544443
No 147
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=76.70 E-value=3.2 Score=31.79 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcC----CCHHHHHHHHHHHHhcccccc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~----l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
++.=..|..+|...|++|..+|+...+ +++..|...|-.|.+.|+|..
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r 59 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNH 59 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEE
Confidence 344456788888899999999998864 789999999999999999984
No 148
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=76.51 E-value=8.9 Score=35.07 Aligned_cols=48 Identities=4% Similarity=-0.069 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.--.|-.+|..+|++|..+|++..++++..|-..|-.|.+.|+|....
T Consensus 49 ~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 49 NEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp HHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 334567778888999999999999999999999999999999998433
No 149
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=76.48 E-value=3.9 Score=35.30 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.+.=.+|...|...|+.|..+|++.++++.+.|..-|-.|.+.|+|..+.
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 344455788888889999999999999999999999999999999996443
No 150
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.24 E-value=15 Score=30.73 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=43.5
Q ss_pred cCCchHHHHHHH-HHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLL-SKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l-~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.+|+..| ...+.+ ...+|++...++...+...+.+|.+.|||...
T Consensus 35 l~~~~~~iL~~l~~~~~~~-t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSP-TQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCC-CHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 345567899998 666777 99999999999999999999999999999664
No 151
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=75.77 E-value=10 Score=38.38 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=82.3
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHh-----cccccccccccCCCCCCCCCcceEEEeehhhH-------HHHhchhh
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQ-----QNCVQAFTTEQPDGFADGPKANTQYVVLFDNI-------LHRVRFAK 100 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQ-----hn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i-------l~rlR~p~ 100 (527)
..+|+.+|...|+++...++.+|..|+. ++++....... . +.. -.....|.+|.+=- ..+++.+-
T Consensus 214 ~~lt~~ei~~~t~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~-~-~~~-~~~~d~f~~N~~F~~~k~~k~~~r~ki~~ 290 (382)
T 3dpl_C 214 EKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVN-S-PKD-FTEGTLFSVNQEFSLIKNAKVQKRGKINL 290 (382)
T ss_dssp CCEEHHHHHHHHCCCHHHHHHHHHHHHCCTTCSSCSEEESSCCS-S-GGG-CCTTCEEEECTTCCEESSSSEESEEEEEC
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHhcccchhcceeeecCCcc-c-cCc-CCCCCEEEEcCCCcCCcccccceeEEEec
Confidence 5789999999999999999999999986 45665222110 0 000 00123566665421 12333221
Q ss_pred H--------HH------HH-HHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhccccee
Q 009725 101 F--------LT------IL-SQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165 (527)
Q Consensus 101 ~--------i~------~i-~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~ 165 (527)
. .. .| +.+--..-|.||.-+=....++-.+++..+.+....-=..+...|+.++..|++.+||+|
T Consensus 291 ~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR 370 (382)
T 3dpl_C 291 IGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRR 370 (382)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccccccchhhhhhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhcc
Confidence 1 00 01 111112346677777788889988888887664321112367889999999999999999
Q ss_pred cC
Q 009725 166 CP 167 (527)
Q Consensus 166 v~ 167 (527)
.+
T Consensus 371 ~~ 372 (382)
T 3dpl_C 371 DE 372 (382)
T ss_dssp ET
T ss_pred CC
Confidence 85
No 152
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=75.58 E-value=3.8 Score=35.16 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.=.+|...|...|+.|..+|++.++++.+.|+.-|-.|.+.|++..+
T Consensus 6 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33478888888999999999999999999999999999999999743
No 153
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=75.57 E-value=3.8 Score=35.44 Aligned_cols=49 Identities=16% Similarity=0.350 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.=.+|...|...|+.|..+|++.++++.+.|+.-|-.|.+.|+|..+.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3445788888889999999999999999999999999999999997443
No 154
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=75.35 E-value=20 Score=31.28 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=71.0
Q ss_pred HHHHHHHhhchhHHHHHHHHHhc--CCCCHHHHHhhcC-CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEE
Q 009725 10 AVHVITNHFGDLVAKVCECLLRK--GPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYV 86 (527)
Q Consensus 10 c~~ii~~~FG~~v~~V~~~Ll~~--G~~tl~~i~~~t~-l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~ 86 (527)
|..+..-.-++.=..|...|+.+ |..|+.+|....+ ++...|..-|-.|...|+|.....+. +.....+...+|.
T Consensus 19 ~~~~~~~l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~--~~~~rGrP~k~Y~ 96 (151)
T 3u1d_A 19 ELERRRFVLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPR--AKSVDDPPTTFYA 96 (151)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCC--CTTSSSCCCEEEE
T ss_pred HHHHHHHhcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCc--CcccCCCCceEEE
Confidence 44455455567778899999987 4589999998877 99999999999999999998554332 1111123357898
Q ss_pred eehhhHHHHhchhhHHHHHHHHhhhhHH-HHHHHHHHcccCC
Q 009725 87 VLFDNILHRVRFAKFLTILSQEFDQQCV-ELVQGLLEHGRLT 127 (527)
Q Consensus 87 ~~~~~il~rlR~p~~i~~i~~~yG~~a~-~I~~~lL~~G~~~ 127 (527)
+...+.-. | + .|...++ ..+..|-..+.-|
T Consensus 97 LT~~Gr~~---l-------~-~y~~la~~~alr~l~~~v~~t 127 (151)
T 3u1d_A 97 VTGEGIAL---L-------R-AVSMYEEAAVWRSVYEQMERT 127 (151)
T ss_dssp ECHHHHHH---H-------H-HTTCSTHHHHTHHHHHHSCCC
T ss_pred ECHHHHHH---H-------H-HhHHHhHHHHHHHHHHHhhcc
Confidence 88765211 1 1 2544444 6666666666444
No 155
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=75.29 E-value=11 Score=31.99 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCchHHHHHHHHHhC-CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 384 GRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 384 G~~~~RI~r~l~~k~-~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
...-++|+..|...+ .+ ...+|++...++...+-.++.+|.+.|||.-..-|. ..|..++.
T Consensus 38 t~~q~~vL~~l~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~~~ 99 (150)
T 3fm5_A 38 RVRSYSVLVLACEQAEGV-NQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPS---DRRNKLIA 99 (150)
T ss_dssp CHHHHHHHHHHHHSTTCC-CSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------------CE
T ss_pred CHHHHHHHHHHHhCCCCc-CHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcc---ccchheee
Confidence 344577888776554 55 999999999999999999999999999996543332 34544443
No 156
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=75.29 E-value=15 Score=30.70 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=40.7
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-.
T Consensus 35 lt~~~~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGL-NLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHTTTC-CHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCc-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 345667889999888888 99999999999999999999999999999654
No 157
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=75.24 E-value=16 Score=30.93 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=42.8
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-++|+..| ..+.+ ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 36 lt~~q~~iL~~l-~~~~~-t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEAL-TVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp CCHHHHHHHHHH-HHSCB-CHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCHHHHHHHHHH-HcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 345567889999 88888 99999999999999999999999999999764
No 158
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.16 E-value=23 Score=30.62 Aligned_cols=50 Identities=12% Similarity=0.145 Sum_probs=43.8
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+
T Consensus 43 lt~~~~~iL~~L~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSNHGPI-NLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHHHCSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 344557888888887887 99999999999999999999999999999654
No 159
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=75.07 E-value=22 Score=29.30 Aligned_cols=59 Identities=8% Similarity=0.128 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLL 447 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~l 447 (527)
..-.+|+..|...+.. ...+|++...++...+-..+.+|.+.|||.-..-| ...|..++
T Consensus 34 ~~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~---~d~R~~~~ 92 (138)
T 1jgs_A 34 AAQFKVLCSIRCAACI-TPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP---NDKRGVLV 92 (138)
T ss_dssp HHHHHHHHHHHHHSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT---TCSSCEEE
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc---ccCceeEe
Confidence 3456788888887887 99999999999999999999999999999765333 23454444
No 160
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=74.96 E-value=34 Score=29.22 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|++|..+|++..++++..|-..|-.|.+.|+|...
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 333457778888899999999999999999999999999999999843
No 161
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=74.94 E-value=4.1 Score=35.85 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce-EEEEeccC---CCCceEEEEEEchH
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL-MEKLVVTG---ARQSQFLLWKVNRQ 453 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~-lQEvpkt~---~~~~t~~lw~v~~~ 453 (527)
.+|+++|.+.+.+ .-.+|++...++...++.-+.+|.+.|+|. +.-+.... .+...|..|.++..
T Consensus 6 ~~il~~L~~~~~~-s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~ 74 (162)
T 3i4p_A 6 RKILRILQEDSTL-AVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASH 74 (162)
T ss_dssp HHHHHHHTTCSCS-CHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSC
T ss_pred HHHHHHHHHCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCC
Confidence 5799999888888 999999999999999999999999999995 22221111 23456777888764
No 162
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=74.88 E-value=3.9 Score=35.86 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.-.+|...|...|++|..+|++.++++.+.|+.-|-.|.+.|+|..+
T Consensus 10 ~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 10 KTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 344578888889999999999999999999999999999999999743
No 163
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=74.74 E-value=4 Score=35.17 Aligned_cols=45 Identities=7% Similarity=0.202 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.+|...|...|+.|..+|++.++++++.|..-|-.|.+.|+|..+
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 467788888899999999999999999999999999999999744
No 164
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=74.58 E-value=12 Score=29.24 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=40.9
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-.+|+..|...+.+ ...+|++...++...+...|..|.+.|+|.-.
T Consensus 25 ~~~~il~~l~~~~~~-s~~ela~~l~is~~tvs~~l~~L~~~glv~~~ 71 (99)
T 3cuo_A 25 KRLLILCMLSGSPGT-SAGELTRITGLSASATSQHLARMRDEGLIDSQ 71 (99)
T ss_dssp HHHHHHHHHTTCCSE-EHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 456788888664467 99999999999999999999999999999665
No 165
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=74.31 E-value=19 Score=30.36 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
--.|-.+| ..|++|..+|++.++++++.|-..+-.|.+.|+|..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34477788 899999999999999999999999999999999984
No 166
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=74.29 E-value=11 Score=32.21 Aligned_cols=50 Identities=10% Similarity=0.235 Sum_probs=42.5
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-.
T Consensus 41 lt~~~~~iL~~l~~~~~~-t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAM-MITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 334456788888776777 99999999999999999999999999999643
No 167
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=74.29 E-value=12 Score=31.21 Aligned_cols=59 Identities=19% Similarity=0.347 Sum_probs=48.0
Q ss_pred HHHHHHHcC--CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEE
Q 009725 376 ESVVSKRYG--RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL 435 (527)
Q Consensus 376 e~~v~~~~G--~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEv 435 (527)
...+.+.+| ..-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||....-
T Consensus 20 ~~~~~~~~~l~~~~~~iL~~l~~~~~~-~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 20 SNLFEKQLGISLTRYSILQTLLKDAPL-HQLALQERLQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 334444434 4567889999888887 9999999999999999999999999999976543
No 168
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=74.26 E-value=9.5 Score=32.45 Aligned_cols=48 Identities=6% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-
T Consensus 40 t~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 40 TIQQLAMINVIYSTPGI-SVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CHHHHHHHHHHHHSTTE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34457889998887777 9999999999999999999999999999976
No 169
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.14 E-value=11 Score=31.51 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.
T Consensus 36 t~~~~~iL~~l~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~---~D~R~~~~~ 96 (143)
T 3oop_A 36 TPEQWSVLEGIEANEPI-SQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST---EDRRISLLS 96 (143)
T ss_dssp CHHHHHHHHHHHHHSSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CCSCEEE
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCC---ccCceeeee
Confidence 34556788888887888 99999999999999999999999999999655333 234544443
No 170
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=73.99 E-value=39 Score=29.21 Aligned_cols=60 Identities=7% Similarity=0.070 Sum_probs=42.5
Q ss_pred CchHHHHHHHHH-hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 385 RDAYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 385 ~~~~RI~r~l~~-k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
..-++|+..|.. .+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.
T Consensus 53 ~~q~~vL~~L~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~ 113 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQ-SQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA---SDRRAKRIK 113 (166)
T ss_dssp HHHHHHHHHHHHSCSSE-EHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-----------CEEE
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC---CCCCeeEEE
Confidence 445678888876 4566 99999999999999999999999999999654333 234544443
No 171
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=73.62 E-value=38 Score=30.03 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHh--cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLR--KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~--~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.--.|-.+|.. .|++|..+|++.++++++.|-..|-.|.+.|+|....
T Consensus 41 ~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 41 SRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 334455566665 6799999999999999999999999999999998433
No 172
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=73.57 E-value=5.8 Score=33.85 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=44.9
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLW 448 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw 448 (527)
+...-++|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.
T Consensus 39 lt~~q~~iL~~l~~~~~~-~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~---D~R~~~~~ 100 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQ-TLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQS---DKRQLIIT 100 (149)
T ss_dssp CCHHHHHHHHHHHHSSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC------------CEEE
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCC---Ccceeeee
Confidence 344567888888887888 999999999999999999999999999996553333 34544443
No 173
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=73.56 E-value=7.5 Score=43.24 Aligned_cols=128 Identities=13% Similarity=0.170 Sum_probs=84.5
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHH--hcccccccccccCCCCCCCCCcceEEEeehh--hHHHHhchhhHH-----
Q 009725 32 KGPLTRQNVKRYTELSDEQVKNALLVLI--QQNCVQAFTTEQPDGFADGPKANTQYVVLFD--NILHRVRFAKFL----- 102 (527)
Q Consensus 32 ~G~~tl~~i~~~t~l~~~~Vr~~L~vLi--Qhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~--~il~rlR~p~~i----- 102 (527)
...+|+.+|...|+++...++.+|..|+ +.+++.. .+. +.. -.....|.+|.+ .-..+++.|.+-
T Consensus 605 ~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~-~p~-~~~----v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 605 GDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK-SPK-GKE----VEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp CCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE-TTC-SSS----CCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeec-CCC-CCC----CCCCCEEEeeccccCCceEEEeccccccccc
Confidence 4688999999999999999999999999 6777752 211 110 001235666644 223344433210
Q ss_pred -------HHHH-HHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 103 -------TILS-QEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 103 -------~~i~-~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..|. ++--..-+.||..+=..+.++-.+++..+.+... -..+...|+.++..|++.+||+|.+
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~ 749 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDK 749 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCC
Confidence 0111 1111235678888888899998888888776432 1236788999999999999999985
No 174
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=73.45 E-value=4.2 Score=35.17 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.=.+|...|...|+.|..+|++.++++.+.|+.-|-.|.+.|++..+.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 4445788889899999999999999999999999999999999998443
No 175
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=73.04 E-value=7.4 Score=33.45 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=50.1
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccC----CCCceEEEEE-EchH
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG----ARQSQFLLWK-VNRQ 453 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~----~~~~t~~lw~-v~~~ 453 (527)
.-.+|+++|...+.+ ...+|++...++...++..+.+|.+.|+|.-....-.. .+-..++.|. ++..
T Consensus 8 ~~~~iL~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~ 79 (150)
T 2w25_A 8 IDRILVRELAADGRA-TLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPS 79 (150)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTT
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCC
Confidence 345889999887888 99999999999999999999999999999543322211 2223455666 6654
No 176
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=73.01 E-value=4.6 Score=35.48 Aligned_cols=46 Identities=11% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
=.+|...|...|++|..+|++.+++++..|+.-|-.|.+.|++.-|
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 3578888999999999999999999999999999999999999833
No 177
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.93 E-value=4.6 Score=34.80 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
.+.-.+|...|...|+.|..+|++.++++...|+.-|-.|...|++..+
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445578888999999999999999999999999999999999999743
No 178
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=72.81 E-value=34 Score=28.43 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=48.6
Q ss_pred HcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 382 RYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
-++..-.+|+..|...+. ...+|++...++...+-..+.+|.+.|||.-..-|. ..|..+ +++.
T Consensus 34 ~lt~~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~---D~R~~~-~~LT 97 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSK---DRRIVI-VEIT 97 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT---EEEEEE-EEEC
T ss_pred CCCHHHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCC---CCceEE-EEEC
Confidence 345566788888877544 999999999999999999999999999997654333 245444 4444
No 179
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.42 E-value=4.1 Score=35.20 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE-EEEec-cC--CCCceEEEEEEchH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVV-TG--ARQSQFLLWKVNRQ 453 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l-QEvpk-t~--~~~~t~~lw~v~~~ 453 (527)
-.+|+++|...+.. .-.+|++...++...++..+.+|.+.|+|.- .-+.. .. .+...++.|.++..
T Consensus 9 ~~~il~~L~~~~~~-s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~ 78 (151)
T 2cyy_A 9 DKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 78 (151)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcc
Confidence 35789999887888 9999999999999999999999999999942 21111 11 23346778888854
No 180
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=71.97 E-value=17 Score=31.02 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=43.3
Q ss_pred HcCC--chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 382 RYGR--DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 382 ~~G~--~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
.+|- .-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.
T Consensus 44 ~~~lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 44 RYGMAIPEWRVITILALYPGS-SASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHCCCHHHHHHHHHHHHSTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred hcCCCHHHHHHHHHHHhCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 3454 456788888877777 999999999999999999999999999996543
No 181
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=71.74 E-value=0.23 Score=49.98 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVR 97 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR 97 (527)
+.-++|..+|+.+|+.|..+|++.+++|.+.|..+|-.|.+.|+|.. .... ...|+-+.++.++..++
T Consensus 18 ~~ea~vY~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~-~~g~---------p~~y~av~p~~~l~~l~ 85 (342)
T 3qph_A 18 KYEILTYWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTE-IEGT---------PKVYAAYSPRIAFFRFK 85 (342)
T ss_dssp HHTTSCSHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEE-ECCT---------TCEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-EcCc---------eeEEEEcCHHHHHHHHH
Confidence 66678899999999999999999999999999999999999999983 2221 13456666777776654
No 182
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=71.70 E-value=6.4 Score=30.95 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHhhchhHH--HHHHHHHhcC-CCCHHHHHhhcCCCHHH-HHHHHHHHHhccccc
Q 009725 15 TNHFGDLVA--KVCECLLRKG-PLTRQNVKRYTELSDEQ-VKNALLVLIQQNCVQ 65 (527)
Q Consensus 15 ~~~FG~~v~--~V~~~Ll~~G-~~tl~~i~~~t~l~~~~-Vr~~L~vLiQhn~V~ 65 (527)
...||.... .+...|..+| ++|..+|++.++++++. |-..|-.|.+.|+|.
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 345665443 2334555677 89999999999999999 999999999999998
No 183
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=71.41 E-value=6.5 Score=33.29 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEE---eccC-CCCceEEEEEEchH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKL---VVTG-ARQSQFLLWKVNRQ 453 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEv---pkt~-~~~~t~~lw~v~~~ 453 (527)
-.+|++.|...+.+ ...+|++...++...++..|.+|.+.|+|.-.-. |+.. -+-..+..|.+...
T Consensus 6 ~~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~ 75 (141)
T 1i1g_A 6 DKIILEILEKDART-PFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPE 75 (141)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGG
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECch
Confidence 35788888777788 9999999999999999999999999999952211 1111 23345777777653
No 184
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=71.21 E-value=34 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=40.8
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcC----CCcccHHHHHHHHHhcccceEEE
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~am----i~~k~~r~~L~~L~~~g~v~lQE 434 (527)
.=..|+.+|..++.+ ..++|++... ++...+..+|.+|.+.|||.-..
T Consensus 11 ~q~~vL~~L~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDKKSV-SANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHSSSE-EHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345788999888887 9999999987 47889999999999999996653
No 185
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=71.00 E-value=12 Score=31.67 Aligned_cols=48 Identities=4% Similarity=0.145 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|-.+|..+ |++|..+|++.+++++..|-..+-.|.+.|+|...
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 3344677778877 89999999999999999999999999999999843
No 186
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=70.88 E-value=8.2 Score=32.44 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=42.2
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|
T Consensus 35 t~~q~~vL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 35 TYTGYIVLMAIENDEKL-NIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp CHHHHHHHHHSCTTCEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CHHHHHHHHHHHHcCCc-CHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 34456777777666777 99999999999999999999999999999765433
No 187
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=70.80 E-value=7.1 Score=32.66 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=31.7
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+++|..+|+...++|++.|++.|-.|.+.|+|.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~ 57 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVK 57 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 578999999999999999999999999999997
No 188
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.76 E-value=26 Score=30.33 Aligned_cols=45 Identities=4% Similarity=-0.009 Sum_probs=39.2
Q ss_pred HHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 22 VAKVCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 22 v~~V~~~Ll~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
--.|..+|.. .|++|..+|++.++++...|-..|-.|.+.|+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r 100 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISR 100 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEe
Confidence 3446666766 57899999999999999999999999999999984
No 189
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=70.69 E-value=9.5 Score=32.79 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=42.8
Q ss_pred hhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+-.+...|...|...|..+..+|++..+++...|..+|-.|.+.|+|.
T Consensus 37 ~~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~ 85 (155)
T 2h09_A 37 LIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIE 85 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 3445666777777778999999999999999999999999999999987
No 190
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=70.63 E-value=19 Score=30.06 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=42.4
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
...-.+|+..|...+.+ ...+|++...++...+-.++.+|.+.|||.-
T Consensus 30 t~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 77 (145)
T 3g3z_A 30 NYNLFAVLYTLATEGSR-TQKHIGEKWSLPKQTVSGVCKTLAGQGLIEW 77 (145)
T ss_dssp CHHHHHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEee
Confidence 34557788888888887 9999999999999999999999999999964
No 191
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=70.40 E-value=5.1 Score=31.79 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=39.5
Q ss_pred HHHHHHHHhcC--CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 23 AKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 23 ~~V~~~Ll~~G--~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
-.|..+|...| .++-.+|...++++...|-.+|-.|.+.|+|..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 35778888755 899999999999999999999999999999973
No 192
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=70.38 E-value=3.9 Score=33.81 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhc--CCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTT--FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~a--mi~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
-.+|+.+|.+.|.+ ...+|++.. -++...+++.|.+|.+.|+|+-. . +. +|.+....
T Consensus 15 d~~IL~~L~~~g~~-s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~----~----rg--~Y~LT~~G 73 (111)
T 3b73_A 15 DDRILEIIHEEGNG-SPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL----A----NG--VYVITEEG 73 (111)
T ss_dssp HHHHHHHHHHHSCB-CHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC----S----TT--CEEECHHH
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec----C----Cc--eEEECchH
Confidence 36899999888998 999999999 89999999999999999999652 1 12 77777554
No 193
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=70.33 E-value=19 Score=28.79 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
.-.+|+..|. .+.+ .-.+|++...++...+...|..|.+.|+|..... ++ ...|+++.+.
T Consensus 27 ~r~~IL~~L~-~~~~-~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~------gr-~~~y~l~~~~ 86 (106)
T 1r1u_A 27 NRIRIMELLS-VSEA-SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ------GQ-SMIYSLDDIH 86 (106)
T ss_dssp HHHHHHHHHH-HCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEESSHH
T ss_pred HHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CC-EEEEEEChHH
Confidence 3468888886 6777 9999999999999999999999999999976531 23 3456777654
No 194
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=70.29 E-value=6.2 Score=30.14 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHc--ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 111 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 111 ~~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
+.-..|++.|..+ |++++.++.+.+....+ ..+...+...+..|.+.|+|.+++
T Consensus 17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~---~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGE---EIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCeEEEe
Confidence 3456777777766 69999999999854322 347888999999999999999985
No 195
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=69.94 E-value=36 Score=28.85 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=41.0
Q ss_pred hhHHHHHHHH-HhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECL-LRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~L-l~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+| ...|++|..+|++..++++..|...|-.|.+.|+|...
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 3344577777 46789999999999999999999999999999999843
No 196
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.78 E-value=14 Score=31.46 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=44.3
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+...-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-..
T Consensus 42 lt~~~~~iL~~l~~~~~~-t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPK-KMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp SBHHHHHHHHHHHHHCCB-CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 444557889999887877 999999999999999999999999999997653
No 197
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=69.17 E-value=5.6 Score=32.06 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 109 FDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 109 yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.+..-..|+..|..+|.++..+|.+.+.... ..+...+...+..|.+.|||.+.+
T Consensus 33 LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~----~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 33 VSNAELIVMRVIWSLGEARVDEIYAQIPQEL----EWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp CCCSCSHHHHHHHHHSCEEHHHHHHTCCGGG----CCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHhccc----CCCHhhHHHHHHHHHHCCCEEEEe
Confidence 3445667899999999999999998875421 135788999999999999999974
No 198
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.09 E-value=5.7 Score=35.34 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=51.9
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE-EEEec-cC--CCCceEEEEEEchH
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM-EKLVV-TG--ARQSQFLLWKVNRQ 453 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l-QEvpk-t~--~~~~t~~lw~v~~~ 453 (527)
...-.+|++.|...+.+ .-.+|++...++...++..|.+|.+.|+|.- .-+.. .. .+...|+.|.++..
T Consensus 26 d~~d~~IL~~L~~~~~~-s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~ 98 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKA-PLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAG 98 (171)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcc
Confidence 33445899999887888 9999999999999999999999999999952 21111 11 23346777888854
No 199
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.46 E-value=7.8 Score=34.39 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.-.+|...|...|+.|..+|++.++++...|+.-|-.|.+.|+|..+
T Consensus 17 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 17 DLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 444578889999999999999999999999999999999999999633
No 200
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=68.11 E-value=21 Score=27.95 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhCCCcchhhh----hhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 386 DAYRIFRLLSKSGRLLETDKI----SDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i----~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
.-.+|+..|...+.+ ...+| ++...++...+-..+.+|.+.|||.-..-|
T Consensus 9 ~q~~iL~~l~~~~~~-~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 9 PEAIVLAYLYDNEGI-ATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp HHHHHHHHHTTCTTC-BHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHcCCc-CHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 346788888777777 99999 899999999999999999999999665443
No 201
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=68.07 E-value=11 Score=31.03 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
-.+|+++|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ...|+++.+.
T Consensus 23 r~~IL~~L~-~~~~-~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~------gr-~~~y~l~~~~ 81 (118)
T 2jsc_A 23 RCRILVALL-DGVC-YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE------GR-QVRYALADSH 81 (118)
T ss_dssp HHHHHHHHH-TTCC-STTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC------SS-SEEEEESSHH
T ss_pred HHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE------CC-EEEEEEChHH
Confidence 467888886 5677 8899999999999999999999999999966521 22 2457777653
No 202
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=67.94 E-value=10 Score=34.35 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=44.5
Q ss_pred hhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
...+.-.+|...|. .|++|..+|++.++++++.|..-|-.|.+.|+|..+
T Consensus 17 l~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34566778888887 799999999999999999999999999999999855
No 203
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=67.59 E-value=9.1 Score=29.11 Aligned_cols=54 Identities=7% Similarity=0.227 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 110 DQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 110 G~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
+..-..|+..|..+|.++..+|.+.+.... ..+...+...+..|.+.|||.+.+
T Consensus 8 t~~e~~vL~~L~~~~~~t~~ei~~~l~~~~----~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 8 SDAELEVMKVIWKHSSINTNEVIKELSKTS----TWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CHHHHHHHHHHHTSSSEEHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCHHHHHHHHhhcC----CccHHHHHHHHHHHHHCCCeEEEe
Confidence 344566888888899999999999886421 125778999999999999999975
No 204
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=67.52 E-value=35 Score=28.61 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHh-cCCCCHHHHHhhcC----CCHHHHHHHHHHHHhcccccc
Q 009725 19 GDLVAKVCECLLR-KGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 19 G~~v~~V~~~Ll~-~G~~tl~~i~~~t~----l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
++.=..|..+|.. +|++|..+|....+ ++++.|...|-.|.+.|+|..
T Consensus 8 t~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r 60 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQ 60 (138)
T ss_dssp CHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3444567888888 59999999999986 899999999999999999984
No 205
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=67.51 E-value=7.8 Score=34.44 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=45.2
Q ss_pred hchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
..+.=.+|...|...|+.|..+|++..+++...|+.-|-.|...|+|..+.
T Consensus 25 ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~ 75 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFT 75 (171)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCC
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeee
Confidence 445566888999999999999999999999999999999999999997443
No 206
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=67.49 E-value=41 Score=27.91 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
+.--.|..+|..+|. |..+|++..+++++.|-..|-.|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 37 YLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 444567888888888 99999999999999999999999999999843
No 207
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=66.84 E-value=18 Score=29.87 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=55.6
Q ss_pred chHHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHHHHH
Q 009725 386 DAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLDEM 463 (527)
Q Consensus 386 ~~~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~~~~ 463 (527)
.-.+|+..|... +.+ ..++|++...++...+-.++.+|.+.|||.-..-| ...|..+++-.+ . =..+++.+
T Consensus 38 ~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~---~D~R~~~i~LT~-~--G~~~~~~~ 110 (127)
T 2frh_A 38 EEFAVLTYISENKEKEY-YLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE---HDERTVLILVNA-Q--QRKKIESL 110 (127)
T ss_dssp HHHHHHHHHHHTCCSEE-EHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS---SSSCCCEEECCS-H--HHHHHHHH
T ss_pred HHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC---CCCCeeEEEECH-H--HHHHHHHH
Confidence 346788888776 667 99999999999999999999999999999533212 445665554322 2 23444555
Q ss_pred HHHHHHHHHHH
Q 009725 464 FHAALNLSLRV 474 (527)
Q Consensus 464 yk~~~nl~~R~ 474 (527)
...+...+...
T Consensus 111 ~~~~~~~~~~~ 121 (127)
T 2frh_A 111 LSRVNKRITEA 121 (127)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 208
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=66.83 E-value=9.3 Score=32.14 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 35 LTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 35 ~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.|..+|++.++++.+.|..+|-.|++.|+|..
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~ 83 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAI 83 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 69999999999999999999999999999984
No 209
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=66.27 E-value=7.5 Score=34.32 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHh-CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k-~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-|+|++-.|..+ +..+.-++|++..-+|..-+++++.+|.+.|||.-.
T Consensus 12 ~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 12 SVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3688999888754 455599999999999999999999999999999654
No 210
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=66.23 E-value=3.5 Score=35.58 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=43.0
Q ss_pred cCCchHHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+.-|.|++-.|..+ +..+.-++|++..-+|..-++++|.+|.+.|+|..+
T Consensus 9 ~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 9 KGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 455688999998754 244599999999999999999999999999999543
No 211
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=66.19 E-value=19 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.154 Sum_probs=37.2
Q ss_pred HHHHHHHHHhC-CCcchhhhhhhcCCCccc-HHHHHHHHHhcccce
Q 009725 388 YRIFRLLSKSG-RLLETDKISDTTFVEKKD-APKILYKLWKDGYLL 431 (527)
Q Consensus 388 ~RI~r~l~~k~-~l~eek~i~~~ami~~k~-~r~~L~~L~~~g~v~ 431 (527)
+.++.++..++ .+ ...+|++...++... +-..+.+|.+.|||.
T Consensus 18 l~~L~~l~~~~~~~-t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 18 LPTLLEFEKKGYEP-SLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCCC-CHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34555666666 67 999999999999999 999999999999998
No 212
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=65.18 E-value=11 Score=31.51 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
-.+|+..|...+ + ...+|++...++...+...+.+|.+.|||.-+.
T Consensus 40 ~~~iL~~l~~~~-~-t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 40 QEHILMLLSEES-L-TNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHHTTCC-C-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCC-C-CHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 357888887766 6 999999999999999999999999999996543
No 213
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=65.15 E-value=7.3 Score=34.30 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred cCCchHHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+.-|+|++-.|... +..+..++|++..-+|.+-++++|.+|.+.|+|...
T Consensus 25 ~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 25 KGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 445688999888753 344599999999999999999999999999999655
No 214
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=65.11 E-value=28 Score=32.47 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 24 ~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.|-.+|...+ ++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 53 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA 53 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4555666664 799999999999999999999999999999983
No 215
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=65.07 E-value=26 Score=29.51 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhccccccc
Q 009725 22 VAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAF 67 (527)
Q Consensus 22 v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~ 67 (527)
--.|-.+|..+| ++|..+|++.+++++..|-..+-.|.+.|+|...
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 344555665554 7899999999999999999999999999999843
No 216
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=64.89 E-value=49 Score=26.03 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhchh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFA 99 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p 99 (527)
+++..|-..+. .| .+..+|+..++++++.++.-|-.|...|+|.. ... .|.+-..+--..-.+-
T Consensus 8 eIi~~IL~~i~-~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~-~~~-------------~~~LT~kG~~~l~~l~ 71 (95)
T 1r7j_A 8 EIIQAILEACK-SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGK-------------QYMLTKKGEELLEDIR 71 (95)
T ss_dssp HHHHHHHHHHT-TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETT-------------EEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEE-ECC-------------eeEEChhHHHHHHHHH
Confidence 34455555553 57 89999999999999999999999999999982 211 3778777665555555
Q ss_pred hHHHHHHH
Q 009725 100 KFLTILSQ 107 (527)
Q Consensus 100 ~~i~~i~~ 107 (527)
.+......
T Consensus 72 ~~~~~l~~ 79 (95)
T 1r7j_A 72 KFNEMRKN 79 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 217
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=64.57 E-value=30 Score=27.76 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
...-.+|+.+|. .|.+ .-.+|++...++...+...|..|.+.|+|....- ++.. .|+++.+.
T Consensus 24 ~~~r~~IL~~L~-~~~~-s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~------gr~~-~y~l~~~~ 85 (108)
T 2kko_A 24 NGRRLQILDLLA-QGER-AVEAIATATGMNLTTASANLQALKSGGLVEARRE------GTRQ-YYRIAGED 85 (108)
T ss_dssp TSTTHHHHHHHT-TCCE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE------TTEE-EEEESCHH
T ss_pred CHHHHHHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CCEE-EEEEChHH
Confidence 344578998885 4777 9999999999999999999999999999976531 2222 36666553
No 218
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=64.15 E-value=10 Score=32.20 Aligned_cols=47 Identities=13% Similarity=0.279 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+
T Consensus 48 ~~~~iL~~l~~~~~~-t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 48 PQYLVMLVLWETDER-SVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHHSCSE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCc-CHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 346788888777777 99999999999999999999999999999765
No 219
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=64.12 E-value=4.6 Score=34.77 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
.+|++.|...+.+ ...+|++...++...++..+.+|.+.|+|.
T Consensus 6 ~~il~~L~~~~~~-~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 6 LRILKILQYNAKY-SLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHTTCTTS-CHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 4788888777777 999999999999999999999999999995
No 220
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=64.09 E-value=10 Score=29.76 Aligned_cols=46 Identities=20% Similarity=0.071 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..-.+|+.+| .+.+ .-.+|++..-++...++..|..|.+.|+|.-.
T Consensus 31 ~~r~~Il~~L--~~~~-~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 31 PVRRKILRML--DKGR-SEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHHHH--HTTC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHH--cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3445788888 5777 99999999999999999999999999999643
No 221
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=63.99 E-value=8.9 Score=36.29 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=44.2
Q ss_pred hchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
..+..-.|-..|..+|++|+.+|++.++++.+.|...|-.|.+.|+|..
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456677888888999999999999999999999999999999999984
No 222
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=63.71 E-value=11 Score=32.43 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhc---CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRK---GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~---G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+.+=++.-+|..+ ++.|..+|+...++|++-+++.|..|.+.|+|.
T Consensus 11 ~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 11 RYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEE
Confidence 4444555555544 368999999999999999999999999999997
No 223
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=63.59 E-value=12 Score=32.14 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 112 ~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.=..|++.|..++++++.++.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 20 qR~~Il~~l~~~~h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 20 QRQLVLEAVDTLEHATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEE
Confidence 45678888888899999999999865432 357889999999999999999985
No 224
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=62.71 E-value=11 Score=28.70 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 26 CECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 26 ~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
...|-..+..|..+|++..+++.+.|...|..|..-|.|.
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~ 60 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVK 60 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 3344444559999999999999999999999999999996
No 225
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=62.59 E-value=7.4 Score=29.83 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHHh-----CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 389 RIFRLLSKS-----GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 389 RI~r~l~~k-----~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.|+.+|... |+-..-.+|++...++...+|.-|..|.+.|+|.-.
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 466666665 455599999999999999999999999999999543
No 226
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=62.58 E-value=7.7 Score=36.48 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
...+.-+++.+|+.|..+|+..+++|++.|...|--|..+++|.
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~ 209 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVK 209 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE
Confidence 56666677889999999999999999999999999999999996
No 227
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=61.95 E-value=26 Score=28.59 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=47.9
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
..-.+|+.+|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++ ..+|+++.+.
T Consensus 18 ~~R~~Il~~L~-~~~~-~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~------gr-~~~y~l~~~~ 78 (118)
T 3f6o_A 18 PTRRAVLGRLS-RGPA-TVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ------GR-VRTCAIEKEP 78 (118)
T ss_dssp HHHHHHHHHHH-TCCE-EHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE------TT-EEEEEECSHH
T ss_pred HHHHHHHHHHH-hCCC-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec------CC-EEEEEECHHH
Confidence 34578888886 5787 9999999999999999999999999999966533 23 2346777653
No 228
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=61.62 E-value=6 Score=34.27 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHh-CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k-~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-|+|++-.|... +..+.-++|++..-+|.+-+++++.+|.+.|+|.-.
T Consensus 14 ~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 14 SIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 3588999888753 344599999999999999999999999999999643
No 229
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=61.54 E-value=10 Score=32.09 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 384 GRDAYRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 384 G~~~~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
...-.+|+..|... +.+ ...+|++...++...+-.++.+|.+.|||.-+.
T Consensus 40 t~~q~~vL~~l~~~~~~~~-t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 40 NSQQGRMIGYIYENQESGI-IQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CHHHHHHHHHHHHHTTTCC-CHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CHHHHHHHHHHHhCCCCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 33447888888877 677 999999999999999999999999999996553
No 230
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=61.38 E-value=70 Score=29.57 Aligned_cols=115 Identities=13% Similarity=0.128 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhc------ccccccccccCCCCCCCCCcceEEEeehhhHH
Q 009725 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQ------NCVQAFTTEQPDGFADGPKANTQYVVLFDNIL 93 (527)
Q Consensus 21 ~v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQh------n~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il 93 (527)
+.+.|=..|+..| ++|+.+|.+.++++...|+.+|--|.+. ++-. .... + -|.+-..
T Consensus 16 l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel-~~v~--~----------gy~l~T~--- 79 (219)
T 2z99_A 16 LKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDL-RHTS--E----------GWRMYTR--- 79 (219)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEE-EEET--T----------EEEEEEC---
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEE-EEEC--C----------EEEEEEc---
Confidence 4456667777665 7999999999999999999999999763 1111 0111 0 2333322
Q ss_pred HHhchhhHHHHHH--------HHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhccccee
Q 009725 94 HRVRFAKFLTILS--------QEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVER 165 (527)
Q Consensus 94 ~rlR~p~~i~~i~--------~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~ 165 (527)
|.|-.+++ ..+...+-+++..+..+|-+|-.+|-+.-.-. ....+.+|+..|||..
T Consensus 80 -----~e~~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~-----------~~~~v~~Lle~gLI~e 143 (219)
T 2z99_A 80 -----ARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQPVTRARVSAVRGVN-----------VDAVMRTLLARGLITE 143 (219)
T ss_dssp -----GGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSC-----------CHHHHHHHHHTTSEEE
T ss_pred -----HHHHHHHHHHhcccccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------HHHHHHHHHHCCCEEE
Confidence 22222222 34555666799999999999988887654321 1578999999999998
Q ss_pred cC
Q 009725 166 CP 167 (527)
Q Consensus 166 v~ 167 (527)
+.
T Consensus 144 ~G 145 (219)
T 2z99_A 144 VG 145 (219)
T ss_dssp EE
T ss_pred cc
Confidence 75
No 231
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=60.52 E-value=71 Score=26.35 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=33.2
Q ss_pred hcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 31 RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 31 ~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..|++|+.+|++..+++.+.|...|-.|.+.|+|.
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 36799999999999999999999999999999997
No 232
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=60.50 E-value=23 Score=30.59 Aligned_cols=49 Identities=6% Similarity=-0.091 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
..--.|-.+|..+ +++|..+|++..++++..|-..|-.|.+.|+|....
T Consensus 46 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 46 AQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 4445577777775 499999999999999999999999999999998433
No 233
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=60.29 E-value=14 Score=30.47 Aligned_cols=78 Identities=6% Similarity=0.083 Sum_probs=54.4
Q ss_pred HHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhchhhHHHHHH
Q 009725 27 ECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKFLTILS 106 (527)
Q Consensus 27 ~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~i~~i~ 106 (527)
..|+.+|+-+++.|...|++|.+.++..|..|-..++..-|...... ...-+|.+.-=.++.+=.+-.=+..|+
T Consensus 26 a~lId~~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~FvQ~G~R------~n~GyY~I~dWG~idk~Wv~~~~~~i~ 99 (117)
T 3ke2_A 26 AHLMDDARHNLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGER------HNAGYYRIRTWGPISSAWMDTHVDEVK 99 (117)
T ss_dssp HHHHHHSCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTC------CSCCEEEEEECTTBCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEEEEEecccc------CCCccEEEeecCccCHHHHHHHHHHHH
Confidence 35667799999999999999999999999999999988766543211 112478887545555544444444444
Q ss_pred HHhh
Q 009725 107 QEFD 110 (527)
Q Consensus 107 ~~yG 110 (527)
...|
T Consensus 100 ~~L~ 103 (117)
T 3ke2_A 100 SLLG 103 (117)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 4444
No 234
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=59.37 E-value=65 Score=25.59 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=42.1
Q ss_pred cCCc-hHHHHHHHHHhCCCcchhhhhhhc-CCCcccHHHHHHHHHhcccceEEE
Q 009725 383 YGRD-AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 383 ~G~~-~~RI~r~l~~k~~l~eek~i~~~a-mi~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+|.. ..+|+..|. .|.+ ...+|++.. .++...+-..|.+|.+.|+|.-..
T Consensus 11 l~~~~~~~IL~~L~-~~~~-~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 11 IGGKWKXVILXHLT-HGKK-RTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp HCSTTHHHHHHHHT-TCCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCccHHHHHHHHH-hCCC-CHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 4444 467888885 6788 999999998 999999999999999999997543
No 235
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=59.19 E-value=9.2 Score=32.36 Aligned_cols=65 Identities=17% Similarity=0.217 Sum_probs=44.5
Q ss_pred CcEEEehHH---HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhC-CCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 357 DSYSIDFEK---IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 357 ~~y~V~~~~---i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~-~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+|.||.+. +-..+.....+.|+.-.|.. | +|-.+.+|++.-.++...+|+.+..|..+|+|..
T Consensus 3 ~M~~id~~s~~PlY~QI~~~i~~~I~~G~l~p------------G~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 3 AMFTINTKSQLPIYEQIVQKIKEQVVKGVLQE------------GEKILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp CCCCCCTTSSSCHHHHHHHHHHHHHHHTSSCT------------TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHcCCCCC------------CCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 356666553 34444444444444433322 4 3337889999999999999999999999999965
Q ss_pred E
Q 009725 433 E 433 (527)
Q Consensus 433 Q 433 (527)
.
T Consensus 71 ~ 71 (134)
T 4ham_A 71 V 71 (134)
T ss_dssp E
T ss_pred E
Confidence 4
No 236
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=59.11 E-value=17 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcC----CCHHHHHHHHHHHHhcccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTE----LSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~----l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
=..|-.+|...|++|..+|++..+ +++..|...|-.|.+.|+|..
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R 85 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLST 85 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEE
Confidence 346888999999999999999875 678999999999999999984
No 237
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=59.06 E-value=7.7 Score=32.79 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
..-.+|+..|...+.+ ...+|++...++...+-..+.+|.+.|||.-+.-|
T Consensus 40 ~~~~~iL~~l~~~~~~-t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 40 MTEWRIISVLSSASDC-SVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp HHHHHHHHHHHHSSSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 3456788888888878 99999999999999999999999999999765443
No 238
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=58.76 E-value=12 Score=35.23 Aligned_cols=43 Identities=9% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 24 ~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.|-.+|..++ ++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4555666665 799999999999999999999999999999984
No 239
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=58.65 E-value=7.2 Score=36.96 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=45.0
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
++....+|+..|...+.+ ...+|++...++...+...|.+|.+.|||.-.
T Consensus 150 L~~~~~~IL~~L~~~~~~-s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGT-GITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 556778899998888888 99999999999999999999999999999654
No 240
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=57.85 E-value=20 Score=31.04 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
-.+|+++|. .+.+ .-.+|++...++...+...|..|.+.|+|.... . ++. -+|+++...
T Consensus 60 R~~IL~~L~-~~~~-t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~---~---Gr~-~~y~lt~~~ 118 (151)
T 3f6v_A 60 RRRLVQLLT-SGEQ-TVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK---D---GRF-RYYRLDPQG 118 (151)
T ss_dssp HHHHHHHGG-GCCE-EHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE---E---TTE-EEEEECHHH
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---c---CCE-EEEEEChHH
Confidence 367888886 5777 999999999999999999999999999997652 1 232 456677543
No 241
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=57.48 E-value=17 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++.|..+|+...++|++-+++.|..|.+.|+|.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~ 75 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVK 75 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 478999999999999999999999999999998
No 242
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=57.21 E-value=83 Score=26.64 Aligned_cols=66 Identities=6% Similarity=-0.004 Sum_probs=49.1
Q ss_pred cCCc--hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 383 YGRD--AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 383 ~G~~--~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
||-. -++|+..|...+....+++|++...++...+-.++.+|.+.|||.-+.-| ...|..++.-.+
T Consensus 27 ~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~---~DrR~~~l~LT~ 94 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA---NDRRAKRIKLTE 94 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS---SCTTCEEEEECG
T ss_pred cCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC---CCCcchhhhcCH
Confidence 5543 34677777665554488999999999999999999999999999654333 446766665444
No 243
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=56.48 E-value=22 Score=27.24 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 112 ~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.-+.||.-+=....++-.+|+..+.+....--..+...++.++..|++.+||.|.+
T Consensus 12 i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 12 IQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67 (77)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred EeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCC
Confidence 35667777777888888888887765432111236788999999999999999985
No 244
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=56.43 E-value=39 Score=27.34 Aligned_cols=47 Identities=11% Similarity=0.273 Sum_probs=40.4
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcC----CCcccHHHHHHHHHhcccceEE
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~am----i~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-..|+.+|...+.+ ...+|++... ++...+..+|.+|.+.|||.-.
T Consensus 11 ~~~~vL~~l~~~~~~-t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 11 AEWEVMNIIWMKKYA-SANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHHSSE-EHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCc-CHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 346788888777777 9999999988 7799999999999999999765
No 245
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=56.14 E-value=10 Score=36.48 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=38.3
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
.+++|+.+|...+.-+.-.+|++...+|...+..+|..|...|||.
T Consensus 31 Ral~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~ 76 (275)
T 3mq0_A 31 RAVRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLA 76 (275)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3678999997765433999999999999999999999999999994
No 246
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=55.79 E-value=30 Score=32.06 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
....+|.+.+-..|..|..+|.+..+.+....+..|-.+++.|+++.
T Consensus 154 ~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~ 200 (218)
T 3cuq_B 154 EMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp GGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 45667777777789999999999999999999999999999999973
No 247
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=55.47 E-value=16 Score=32.25 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=41.7
Q ss_pred CchHHHHHHHHHhCC---CcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKSGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~---l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..-.+|+..|...+. + ...+|++...++...+-..+.+|.+.|||.-+
T Consensus 69 ~~~~~iL~~L~~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGL-RPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCB-CHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHHcCCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 445778888887765 6 99999999999999999999999999999654
No 248
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=55.40 E-value=19 Score=28.80 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHh-hcCCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKR-YTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~-~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+.--.|-..|-.+|..|+.+|+. ..+++.+.|-..+=+|++.|+|.
T Consensus 16 ~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 16 EKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 33345666788899999999999 99999999999999999999997
No 249
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=55.39 E-value=15 Score=30.39 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
-.+|+.+|...|.+ .-.+|++...++...+...|..|.+.|+|...
T Consensus 44 rl~IL~~L~~~~~~-s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 44 RAKITYALCQDEEL-CVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp HHHHHHHHHHSSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 35788888767787 99999999999999999999999999999653
No 250
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=54.98 E-value=31 Score=29.43 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHH-cccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009725 111 QQCVELVQGLLE-HGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (527)
Q Consensus 111 ~~a~~I~~~lL~-~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~~ 168 (527)
..=..|++.|.. .+++++.+|.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFP---NMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCT---TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCChhhHHHHHHHHHHCCCEEEEee
Confidence 445667777776 478999999999865432 3578899999999999999999853
No 251
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=54.42 E-value=47 Score=29.36 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=49.8
Q ss_pred cCCchHHHHHHHHH--hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEE
Q 009725 383 YGRDAYRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 450 (527)
Q Consensus 383 ~G~~~~RI~r~l~~--k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v 450 (527)
+...-.+|+..|.. .+.+ ...+|++...++...+-.++.+|.+.|||.-+.-|. ..|..++.-.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~---DrR~~~l~LT 104 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEET-TLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPH---DKRAINVKVT 104 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS---CSSCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCC---CCCeeEEEEC
Confidence 55666778888875 4567 999999999999999999999999999997654433 3565555433
No 252
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=54.28 E-value=23 Score=30.16 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=43.2
Q ss_pred CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHH
Q 009725 399 RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVL 460 (527)
Q Consensus 399 ~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~ 460 (527)
...+.++||+...++..++-..|.+|.+.|||.+...... ...++ .++|+..++..+.
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~-~g~~~---~~ydL~pL~ekL~ 107 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQ-NGIKF---EKYSLQPLWGKLY 107 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECT-TCCEE---EEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecC-CCceE---EEeeHHHHHHHHH
Confidence 3349999999999999999999999999999998866554 32232 3445555554443
No 253
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=54.20 E-value=35 Score=26.80 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=44.0
Q ss_pred HHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 377 SVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 377 ~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+..---+..-.+|++.|. .|.+ .-.+|++...++...+...|..|.+.|+|...
T Consensus 15 ~~~~~l~~~~r~~Il~~L~-~~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (102)
T 3pqk_A 15 NLLKTLSHPVRLMLVCTLV-EGEF-SVGELEQQIGIGQPTLSQQLGVLRESGIVETR 69 (102)
T ss_dssp HHHHHHCSHHHHHHHHHHH-TCCB-CHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCCHHHHHHHHHHH-hCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3333333445567888885 4777 99999999999999999999999999999654
No 254
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=53.95 E-value=87 Score=27.46 Aligned_cols=122 Identities=10% Similarity=0.162 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcC-CCCHHHHHhhcC--CCHHHHHHHHHHHHhc------ccccccccccCCCCCCCCCcceEEEeehh
Q 009725 20 DLVAKVCECLLRKG-PLTRQNVKRYTE--LSDEQVKNALLVLIQQ------NCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G-~~tl~~i~~~t~--l~~~~Vr~~L~vLiQh------n~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (527)
++.+.|=..|+..| ++|+.+|.+.++ ++...|+.+|--|.+. ++-. .... + ...+...++
T Consensus 7 ~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l-~~v~--~--------gy~l~t~~~ 75 (162)
T 1t6s_A 7 QLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRI-HAIA--G--------GYRFLTEPE 75 (162)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEE-EEET--T--------EEEEEECGG
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEE-EEEC--C--------EEEEEEcHH
Confidence 34456667777776 699999999999 9999999999999763 2111 0111 1 122222222
Q ss_pred h--HHHHhchhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 91 N--ILHRVRFAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 91 ~--il~rlR~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
. .+.++.-+ --...+...+-+++..+..+|-+|-.+|-+--.-. ....+.+|+..|||..++
T Consensus 76 ~~~~v~~~~~~----~~~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~-----------~~~~v~~L~e~glI~e~g 139 (162)
T 1t6s_A 76 FADLVRQLLAP----VIQRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-----------PDYSIDRLLARGLIEVRG 139 (162)
T ss_dssp GHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-----------CCSHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcc----cccCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------HHHHHHHHHHCCCEEEcc
Confidence 1 11111100 01235666677799999999999988887654321 456789999999998875
No 255
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=53.66 E-value=7.6 Score=36.99 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 25 VCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 25 V~~~Ll~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
|-++|.. .+++|+.+|++.++++.+.+..-|-.|.++|+|..
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3334443 47899999999999999999999999999999973
No 256
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=53.36 E-value=9.4 Score=35.83 Aligned_cols=88 Identities=14% Similarity=0.119 Sum_probs=59.8
Q ss_pred chHHHHHHHHHhC-CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchH--HHHHHHHHH
Q 009725 386 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ--ILWKHVLDE 462 (527)
Q Consensus 386 ~~~RI~r~l~~k~-~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~--~~~~~~~~~ 462 (527)
.+++|+++|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-. +.+ +. |++... .+-..--.+
T Consensus 7 r~l~iL~~l~~~~~~~-s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~----~~---Y~lg~~~~~lg~~~~~~ 76 (241)
T 2xrn_A 7 RAASIMRALGSHPHGL-SLAAIAQLVGLPRSTVQRIINALEEEFLVEAL--GPA----GG---FRLGPALGQLINQAQTD 76 (241)
T ss_dssp HHHHHHHHHHTCTTCE-EHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC--GGG----CE---EEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCC----Ce---EEECHHHHHHHhhcccC
Confidence 4678888887655 46 99999999999999999999999999999431 221 22 233322 121113345
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 009725 463 MFHAALNLSLRVSYELDREKE 483 (527)
Q Consensus 463 ~yk~~~nl~~R~~~e~~~~k~ 483 (527)
+...+.-.+.++..+......
T Consensus 77 l~~~a~p~l~~L~~~tgetv~ 97 (241)
T 2xrn_A 77 ILSLVKPYLRSLAEELDESVS 97 (241)
T ss_dssp HHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHHCCeEE
Confidence 666667777777776655443
No 257
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=53.26 E-value=20 Score=31.57 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhcCC---CCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRKGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~---~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.--.|..+|..+|+ +|..+|++.+++++..|-..|-.|.+.|+|....
T Consensus 69 ~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 69 AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 334457777877775 9999999999999999999999999999998543
No 258
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=53.22 E-value=13 Score=31.33 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 390 I~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
|+.++...+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 13 i~~l~~~~~~~-~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYA-RVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhhcCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45555566777 99999999999999999999999999999654
No 259
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=53.16 E-value=33 Score=29.31 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHhc-CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~-G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+-=..|.+.|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-..
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 4445688888874 689999998775 799999999999999999998443
No 260
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=52.93 E-value=87 Score=25.05 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhc-CCCcccHHHHHHHHHhcccceEEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~a-mi~~k~~r~~L~~L~~~g~v~lQE 434 (527)
.-..+|+..|. .|.+ ...+|++.. .++...+-..|.+|.+.|||.-+.
T Consensus 22 ~~~~~IL~~L~-~~~~-~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 22 KWKLSLMDELF-QGTK-RNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp TTHHHHHHHHH-HSCB-CHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred ccHHHHHHHHH-hCCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 33467888886 4788 999999999 999999999999999999997653
No 261
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=52.77 E-value=27 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=43.7
Q ss_pred HHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 380 SKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 380 ~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+......-.+|+..|.. +.. ...+|++...++...+...|.+|.+.|+|...
T Consensus 27 ~~l~~~~~~~il~~L~~-~~~-s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 27 QALATPSRLMILTQLRN-GPL-PVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHCCHHHHHHHHHHHH-CCC-CHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHhCCHHHHHHHHHHHH-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33334455789998876 677 99999999999999999999999999999765
No 262
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=52.68 E-value=27 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=40.5
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..-.+|+.+|.. |.+ .-.+|++...++...+...|..|.+.|+|.-.
T Consensus 23 ~~r~~Il~~L~~-~~~-~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~ 69 (98)
T 3jth_A 23 ERRLQILCMLHN-QEL-SVGELCAKLQLSQSALSQHLAWLRRDGLVTTR 69 (98)
T ss_dssp HHHHHHHHHTTT-SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhc-CCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 334578888865 788 99999999999999999999999999999654
No 263
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.54 E-value=22 Score=29.96 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHc--ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009725 111 QQCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (527)
Q Consensus 111 ~~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~~ 168 (527)
..=..|++.|... +++++.++.+.+....+ ..+...|-.++..|++.|+|.++..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGE---DVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 3345677777654 68999999999865432 3578899999999999999999853
No 264
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=52.52 E-value=8.5 Score=32.40 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=41.6
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-.+|+..|...+.+ ...+|++...++...+...+.+|.+.|||.-+
T Consensus 41 ~~~~iL~~l~~~~~~-~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 41 PQYLALLLLWEHETL-TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHHHHSEE-EHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 356788888887777 99999999999999999999999999999654
No 265
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=52.24 E-value=41 Score=26.80 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHHhCCCcchhhhhhhcC-CCcccHHHHHHHHHhcccceEEE
Q 009725 384 GRDAYRIFRLLSKSGRLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 384 G~~~~RI~r~l~~k~~l~eek~i~~~am-i~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+.-...|+..|. .|.+ ...+|++... ++...+-..|.+|.+.|+|.-..
T Consensus 24 ~~~~~~IL~~L~-~~~~-~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RRII-RYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp SSSHHHHHHHHT-TSCE-EHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CccHHHHHHHHH-hCCc-CHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 344467888885 6778 9999999995 99999999999999999997543
No 266
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=52.08 E-value=20 Score=33.58 Aligned_cols=117 Identities=16% Similarity=0.154 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHccchhhhcccccCCCccChHHHHHHhhhcccCCCCCHHHHHHHHHHhcc-CCCC--CCCCCcEEEehHH
Q 009725 289 GAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGE-LSFV--DASSDSYSIDFEK 365 (527)
Q Consensus 289 ~a~~v~~~~L~~~~~~~~~~~~~~s~p~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~-~~~~--~~~~~~y~V~~~~ 365 (527)
-|-+|++.++.-. ..++.-+++.++...+.+. ..++.+.|.+.++.|.. .+|. ..| |.+.|-.
T Consensus 95 LavqIvEvC~~tr--------~~nGGli~l~el~~~~~r~---~~IS~dDi~rAik~L~~L~gf~v~~v~-g~~~vqs-- 160 (233)
T 1u5t_A 95 VCLKVIEICRQTK--------DMNGGVISFQELEKVHFRK---LNVGLDDLEKSIDMLKSLECFEIFQIR-GKKFLRS-- 160 (233)
T ss_dssp HHHHHHHHHHHHT--------TTSSSCEEHHHHHHTTTTT---TTCCHHHHHHHHHHHTTTCCCCEEEET-TEEEECC--
T ss_pred HHHHHHHHHHHHH--------HhcCCeeEHHHHHHHHHhh---cCCCHHHHHHHHHHhhhccCeEEEEEC-CEEEEEe--
Confidence 3555555555532 2356688999999999764 46888888888877764 3332 112 3443311
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 366 IIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 366 i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
|-.-......+|+.+...+|++ ....+++....+..-|+..|..|.++|++-+=
T Consensus 161 -------------vp~el~~D~~~vLe~a~~~g~v-t~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD 214 (233)
T 1u5t_A 161 -------------VPNELTSDQTKILEICSILGYS-SISLLKANLGWEAVRSKSALDEMVANGLLWID 214 (233)
T ss_dssp -------------SSSCCCTTHHHHHHTTTTTSCC-BHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE
T ss_pred -------------CCCccchHHHHHHHHHHhcCcC-cHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 1122455566666665555776 99999999999999999999999999999543
No 267
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=52.03 E-value=13 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=41.3
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+.-|+|++-.|.....- .-++|++..-+|.+-++++|.+|.+.|+|.-.
T Consensus 7 ~~~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 7 RLAVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 345688999888754333 78899999999999999999999999999543
No 268
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=51.85 E-value=12 Score=35.18 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhC-CCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 386 DAYRIFRLLSKSG-RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 386 ~~~RI~r~l~~k~-~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+.+|+.+|...+ .+ .-.+|++...+|...+..+|..|.+.|||.-
T Consensus 9 r~l~iL~~l~~~~~~~-~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 9 KAFEILDFIVKNPGDV-SVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHHHHCSSCB-CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 4678888887665 46 9999999999999999999999999999954
No 269
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=51.85 E-value=60 Score=26.45 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=44.8
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehh
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFD 90 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~ 90 (527)
|.+--.|-.. +..|+.+-.+|.+.. ++++..|...|-.|.+.|+|.......++ .+...+|++-..
T Consensus 11 g~l~~~IL~~-L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~-----~~~rk~Y~LT~~ 84 (116)
T 3f8b_A 11 AQTNVILLNV-LKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQ-----GGRRKYYRLTEI 84 (116)
T ss_dssp HHHHHHHHHH-HHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC---------CCEEEEEECHH
T ss_pred chHHHHHHHH-HHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCC-----CCCceEEEECHH
Confidence 3344444444 456888888887664 68999999999999999999843321111 122468888866
Q ss_pred h
Q 009725 91 N 91 (527)
Q Consensus 91 ~ 91 (527)
+
T Consensus 85 G 85 (116)
T 3f8b_A 85 G 85 (116)
T ss_dssp H
T ss_pred H
Confidence 5
No 270
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=51.82 E-value=9.7 Score=36.61 Aligned_cols=43 Identities=14% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 24 ~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.|-++|...+ ++|+.+|++.+++|.+.+..-|..|.++|+|..
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~ 77 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR 77 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3555666554 699999999999999999999999999999973
No 271
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=51.78 E-value=94 Score=25.84 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHH-hCCCcchhhhhhhcC----CCcccHHHHHHHHHhcccceEE
Q 009725 384 GRDAYRIFRLLSK-SGRLLETDKISDTTF----VEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 384 G~~~~RI~r~l~~-k~~l~eek~i~~~am----i~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+..=..|+.+|.. .+.+ ..++|++... ++...+-.+|.+|.+.|||.-.
T Consensus 8 t~~e~~vL~~L~~~~~~~-t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 8 GDLERAVMDHLWSRTEPQ-TVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp CHHHHHHHHHHHTCSSCE-EHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhcCCCC-CHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3444678899987 4777 9999999987 7889999999999999999654
No 272
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=51.33 E-value=33 Score=26.20 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=42.3
Q ss_pred chhHHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 19 GDLVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++.-.+|-++|-.-| ++.-.+|+..++++.+.|-++|-.|=.-+.|.
T Consensus 18 ~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred chHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 356788999998886 78899999999999999999999999999986
No 273
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=51.29 E-value=50 Score=27.15 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI 454 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~ 454 (527)
-.+|+..|. .|.+ .-.+|++...++...+...|..|.+.|+|..... ++.. +|+++.+.
T Consensus 48 rl~IL~~L~-~~~~-s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~------gr~~-~y~l~~~~ 106 (122)
T 1r1t_A 48 RLRLLSLLA-RSEL-CVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ------GRHV-YYQLQDHH 106 (122)
T ss_dssp HHHHHHHHT-TCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE------TTEE-EEEESSHH
T ss_pred HHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe------CCEE-EEEEChHH
Confidence 457888885 4677 9999999999999999999999999999976532 2333 46666554
No 274
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=51.11 E-value=29 Score=27.23 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 112 ~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.-+.||.-+=....++-.+|+..+.+....--..+...|+.++..|++.+||.|.+
T Consensus 24 iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~ 79 (88)
T 3o2p_E 24 LEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79 (88)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred hheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCC
Confidence 45777888888888888888888765432111237888999999999999999985
No 275
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.05 E-value=28 Score=29.96 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHc-ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 111 QQCVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 111 ~~a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..=..|++.|... +++++.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEE
Confidence 4456677777765 78999999999865432 347889999999999999999985
No 276
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.64 E-value=20 Score=32.61 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
..-++|+.+|...+.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..++.-.+
T Consensus 48 ~~q~~iL~~L~~~~~~-t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~---~DrR~~~l~LT~ 110 (207)
T 2fxa_A 48 INEHHILWIAYQLNGA-SISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL---NDKRNTYVQLTE 110 (207)
T ss_dssp HHHHHHHHHHHHHTSE-EHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC---------CEEEECH
T ss_pred HHHHHHHHHHHHCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC---CCCceEEEEECH
Confidence 3446788888887888 99999999999999999999999999999554332 335555544333
No 277
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.51 E-value=28 Score=30.50 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHc-ccCCHHHHHHHhhhc--ccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 111 QQCVELVQGLLEH-GRLTLKQMFDRAKSS--EKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 111 ~~a~~I~~~lL~~-G~~~~~~li~~~~~~--~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..=..|++.|..+ +++|+.+|.+.+... .+ ..+...|-.++..|++.|+|.++.
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~---~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDL---NVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGG---CCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 3456677777775 799999999998654 22 347889999999999999999985
No 278
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=49.34 E-value=28 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHHHHHhc----CCCCHHHHHhhc-CCCHHHHHHHHHHHHhcccccccccc
Q 009725 23 AKVCECLLRK----GPLTRQNVKRYT-ELSDEQVKNALLVLIQQNCVQAFTTE 70 (527)
Q Consensus 23 ~~V~~~Ll~~----G~~tl~~i~~~t-~l~~~~Vr~~L~vLiQhn~V~~~~~~ 70 (527)
++|...|-.. ...=+.++.... +..++.|++++..|+.-+-+.||...
T Consensus 6 ~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leywSSG 58 (78)
T 1ucr_A 6 QKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYWSSG 58 (78)
T ss_dssp HHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEEecC
Confidence 4555555443 234478888776 89999999999999999999988754
No 279
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=49.28 E-value=1.1e+02 Score=25.33 Aligned_cols=46 Identities=20% Similarity=0.131 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhc-CCCcccHHHHHHHHHhcccceEEE
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~a-mi~~k~~r~~L~~L~~~g~v~lQE 434 (527)
...|+..|. .|.+ ...+|++.. .|+...+-..|.+|.+.|||.-..
T Consensus 37 ~l~IL~~L~-~g~~-~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 37 GVLILVALR-DGTH-RFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHGG-GCCE-EHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHH-cCCC-CHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 356777775 6788 999999999 699999999999999999997543
No 280
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=49.24 E-value=14 Score=39.72 Aligned_cols=95 Identities=15% Similarity=0.079 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhccC-----CCCCCCCCcEEEehHHHHHHHHHH-HHHH-HH-HHHcCCch--HHHHHHHHHhCCCcch
Q 009725 334 MTLDHVRASLVQLGEL-----SFVDASSDSYSIDFEKIIEIAQNE-EVES-VV-SKRYGRDA--YRIFRLLSKSGRLLET 403 (527)
Q Consensus 334 ~~~~~i~~~L~~La~~-----~~~~~~~~~y~V~~~~i~~~lr~~-~le~-~v-~~~~G~~~--~RI~r~l~~k~~l~ee 403 (527)
++...+.++|+.|... ++....|+.|.+.-+ +...+... .-.. ++ ...+.... -.|+.+|.+.|.+ .-
T Consensus 456 ~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~i-t~ 533 (583)
T 3lmm_A 456 SGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNA-CREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDL-AT 533 (583)
T ss_dssp SCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHH-HHHHHTSCC----------------------------------
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHH-HHHHhcccccccccccccccCChhHHHHHHHHHHHHcCCc-CH
Confidence 4566788888888772 244444589999854 33333221 0011 11 11122222 2578888887887 99
Q ss_pred hhhhhhcCCCcccHHHHHHHHHhcccc
Q 009725 404 DKISDTTFVEKKDAPKILYKLWKDGYL 430 (527)
Q Consensus 404 k~i~~~ami~~k~~r~~L~~L~~~g~v 430 (527)
.+|++.+.++...|+.+|.+|.++|.|
T Consensus 534 ~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 534 SDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp ---------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 999999999999999999999999998
No 281
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=49.04 E-value=24 Score=27.50 Aligned_cols=45 Identities=7% Similarity=-0.061 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHh-cCC---CCHHHHHhhcCCCHHHHHHHHHHHHhcccc
Q 009725 20 DLVAKVCECLLR-KGP---LTRQNVKRYTELSDEQVKNALLVLIQQNCV 64 (527)
Q Consensus 20 ~~v~~V~~~Ll~-~G~---~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V 64 (527)
+-.-.|...|+. .++ +|..+|++.++++++.|-..|-.|.+.|+|
T Consensus 12 ~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 12 EKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred hhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 334445555544 345 899999999999999999999999999999
No 282
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=48.84 E-value=21 Score=30.32 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHc-ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 113 CVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 113 a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
=..|++.|... +++++.++.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGD---AVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCCEEEEE
Confidence 35567777664 79999999999865422 357889999999999999999985
No 283
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=48.44 E-value=56 Score=27.00 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=29.7
Q ss_pred CC-CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 34 ~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++ |..+|++..+++...||.||..|.+.|+|.
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~ 68 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELERAGYIY 68 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEE
Confidence 45 489999999999999999999999999997
No 284
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.40 E-value=29 Score=29.03 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=42.2
Q ss_pred HHHHHHHHHHc-ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecCC
Q 009725 113 CVELVQGLLEH-GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCPA 168 (527)
Q Consensus 113 a~~I~~~lL~~-G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~~ 168 (527)
=..|++.|... +++++.++.+.+....+ ..+...+-.++..|++.|+|.++..
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGE---NIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 45677777764 68999999999865422 3578899999999999999999853
No 285
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=47.19 E-value=34 Score=31.15 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEe
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLV 436 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvp 436 (527)
..-.+|+.+| ..|.+ .-.+|++...++...+-..|..|.+.|+|.-...+
T Consensus 15 ~~rl~IL~~L-~~~~~-s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 15 ETRRRILFLL-TKRPY-FVSELSRELGVGQKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp HHHHHHHHHH-HHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHH-HhCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeec
Confidence 4456788888 45788 99999999999999999999999999999887654
No 286
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=46.50 E-value=47 Score=23.35 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|...|-.+|.+|..+|.... +++...|+..|- ..|+|.
T Consensus 10 i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v~ 52 (64)
T 2p5k_A 10 IREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLVK 52 (64)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCEE
Confidence 44455567889999999888 999999999998 568773
No 287
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.11 E-value=35 Score=29.11 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccccccc
Q 009725 23 AKVCECLLRKGPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (527)
Q Consensus 23 ~~V~~~Ll~~G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~~ 69 (527)
..|.++|...+.+|..+|.... ++++..|-.+|-.|.+.|+|.-...
T Consensus 22 ~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 22 QLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 4577888887788888886653 6899999999999999999985443
No 288
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=45.97 E-value=33 Score=30.61 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=47.1
Q ss_pred HHHHHHhhchhHHHHHHHHHhc----C----CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 11 VHVITNHFGDLVAKVCECLLRK----G----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 11 ~~ii~~~FG~~v~~V~~~Ll~~----G----~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..+..-.+.+.-.+++.+|+.. | ++|..+|+...++++..|-..|-.|.+.|++.
T Consensus 138 ~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 138 WLIEQIMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3344456788889999999874 3 78999999999999999999999999999997
No 289
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.90 E-value=40 Score=28.12 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHhc-CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccccccc
Q 009725 23 AKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (527)
Q Consensus 23 ~~V~~~Ll~~-G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~~ 69 (527)
..|.++|... +.+|..+|.... +++...|-..|-.|.+.|+|.-...
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 3567777755 589999998775 7999999999999999999984443
No 290
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=45.79 E-value=63 Score=27.31 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
...|..+|+..++++++.|-..|-.|++.|++..
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4569999999999999999999999999999984
No 291
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=45.33 E-value=26 Score=30.05 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=31.6
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++.|..+|+...++|++.|++.|..|.+.|+|.
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~ 61 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVY 61 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 478999999999999999999999999999997
No 292
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.10 E-value=25 Score=30.32 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHc--ccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 112 QCVELVQGLLEH--GRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 112 ~a~~I~~~lL~~--G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.=..|++.|... +++|+.+|.+.+....+ ..+...|-.++..|++.|+|.++.
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGE---EIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCcEEEEE
Confidence 345667777655 68999999999865432 357889999999999999999985
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.08 E-value=46 Score=27.96 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhc--CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhcccccccc
Q 009725 20 DLVAKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 20 ~~v~~V~~~Ll~~--G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+-=..|.++|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 3335678888865 589999998775 799999999999999999998443
No 294
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=43.92 E-value=8.3 Score=31.16 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCC-CHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 22 VAKVCECLLRKGPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 22 v~~V~~~Ll~~G~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
-..|...|-..+++ +..+|++..+++...|+.+|-.|.+.|+|..
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 44444222223456 8999999999999999999999999999973
No 295
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=43.47 E-value=11 Score=34.97 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred cHHHHH-HHHHhcccceEEEEeccCCCCceEEEEE
Q 009725 416 DAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWK 449 (527)
Q Consensus 416 ~~r~~L-~~L~~~g~v~lQEvpkt~~~~~t~~lw~ 449 (527)
+.|+++ -.|.++||++-+.||.+ .|.+..|+|-
T Consensus 141 e~rklit~~lV~e~YLey~qvp~s-dp~~yeflWG 174 (217)
T 3nw0_B 141 DPKKLITEDFVRQRYLEYRRIPHT-DPVDYEFQWG 174 (217)
T ss_dssp --HHHHHHHHHHHTCEECC----------CCEECC
T ss_pred CHHHHHHHHHHHcCCeEEEeecCC-CCCeEEEEEc
Confidence 678888 79999999999999988 7888899995
No 296
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.17 E-value=58 Score=25.20 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=35.4
Q ss_pred chHHHHHHHHH-hCC---CcchhhhhhhcCCCcccHHHHHHHHHhcccc
Q 009725 386 DAYRIFRLLSK-SGR---LLETDKISDTTFVEKKDAPKILYKLWKDGYL 430 (527)
Q Consensus 386 ~~~RI~r~l~~-k~~---l~eek~i~~~ami~~k~~r~~L~~L~~~g~v 430 (527)
.+..|+-.+.. .+. + ...+|++...++...+-.++.+|.+.|||
T Consensus 13 ~~~~iL~~l~~~~~~~~~~-t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDV-YIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCE-EHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHccCCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 34455555533 333 6 99999999999999999999999999999
No 297
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=42.79 E-value=37 Score=27.05 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
|++++.+|.+.+.++.+.+...|-.|.+.|+|.-
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 8899999999999999999999999999999984
No 298
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=42.68 E-value=31 Score=30.52 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=41.0
Q ss_pred HHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 25 VCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
|-..| ..|+.+-.+|.+.. ++++.+|...|-.|.+.|+|.....+.++ .+...+|++-..+
T Consensus 7 iL~lL-~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~-----~~~r~~Y~lT~~G 75 (179)
T 1yg2_A 7 ILTVL-STRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEG-----KPDRKVYSITQAG 75 (179)
T ss_dssp HHHHH-HHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC--------------CEEECHHH
T ss_pred HHHHH-hcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCC-----CCCceEEEeChHH
Confidence 33444 46899999998775 69999999999999999999843332211 1224678888665
No 299
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=42.65 E-value=21 Score=32.28 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..-.+|+++|. .|.+ ...+|++...++...++..+.+|.+.|+|.-.
T Consensus 20 ~~~~~IL~~L~-~~~~-s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-NKEM-TISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-TCCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH-cCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34467899987 6787 99999999999999999999999999999876
No 300
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=41.76 E-value=54 Score=26.07 Aligned_cols=49 Identities=8% Similarity=0.115 Sum_probs=40.6
Q ss_pred Hhh--hhHHHHHHHHHHcccCCHHHHHH-HhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009725 108 EFD--QQCVELVQGLLEHGRLTLKQMFD-RAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 164 (527)
Q Consensus 108 ~yG--~~a~~I~~~lL~~G~~~~~~li~-~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~ 164 (527)
++| .....|+-.|-.+|..|+.++.+ ... .++..+...+.-|.++|||.
T Consensus 11 ~~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~--------~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 11 NDVLNEKTATILITIAKKDFITAAEVREVHPD--------LGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TTSSCHHHHHHHHHHHHSTTBCHHHHHHTCTT--------SCHHHHHHHHHHHHTTTSEE
T ss_pred hcCCCHHHHHHHHHHHHCCCCCHHHHHHHHhc--------ccHHHHHHHHHHHHHCCCee
Confidence 355 45788999999999999999988 422 25778999999999999998
No 301
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.59 E-value=51 Score=28.26 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHhc-CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccccccc
Q 009725 23 AKVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (527)
Q Consensus 23 ~~V~~~Ll~~-G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~~ 69 (527)
..|.++|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-...
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 82 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLET 82 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEe
Confidence 4578888775 689999998775 7999999999999999999984443
No 302
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=41.33 E-value=27 Score=26.06 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCC-HHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELS-DEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~-~~~Vr~~L~vLiQhn~V~ 65 (527)
=.+|+++|-.+|+.+.-.|++..||. .++|---|..|-..|++.
T Consensus 12 ee~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~ 56 (72)
T 3eyi_A 12 EEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLD 56 (72)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcC
Confidence 35699999999999999999999995 466999999999999996
No 303
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=41.27 E-value=75 Score=26.72 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=33.8
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 32 ~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.|++|..+|++..++++..|-..+-.|.+.|+|.-..
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 49 SGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp GGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 5789999999999999999999999999999998433
No 304
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=41.25 E-value=15 Score=34.93 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.4
Q ss_pred hHHHHHHHH---H-hcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 21 LVAKVCECL---L-RKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 21 ~v~~V~~~L---l-~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+.+...+| . ..+++|+.+|++.++++.+.+..-|-.|.++|+|.
T Consensus 21 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~ 69 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLT 69 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344555554 2 24789999999999999999999999999999997
No 305
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=40.99 E-value=48 Score=29.02 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHh----cC----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 8 KHAVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 8 ~Lc~~ii~~~FG~~v~~V~~~Ll~----~G----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+...+..-.+.+.-++++.+|+. .| ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 99 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 99 RVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344445556788999999999986 33 36889999999999999999999999999997
No 306
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=40.71 E-value=43 Score=28.48 Aligned_cols=45 Identities=4% Similarity=0.088 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHhc-CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~-G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+.+=.+.-+|..+ |+ |..+|+...++|++-+++.|..|.+.|+|.
T Consensus 9 ~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~ 54 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILT 54 (145)
T ss_dssp HHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 3344444455543 45 999999999999999999999999999997
No 307
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=40.44 E-value=18 Score=34.22 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=32.7
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 32 ~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.+++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~ 61 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG 61 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 36799999999999999999999999999999973
No 308
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=40.13 E-value=49 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=28.8
Q ss_pred CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 36 tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|..+|++..+++...||.||..|.+.|+|.
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~ 64 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIE 64 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 788999999999999999999999999997
No 309
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=39.88 E-value=7.1 Score=34.20 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=44.3
Q ss_pred hchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 18 FGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
+.++-..|...|-..+++|..+|+...+++...|+.+|-.|.+.|+|..|.
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~v 61 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYT 61 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEE
Confidence 556667888877777899999999999999999999999999999998443
No 310
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=39.75 E-value=51 Score=29.04 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=47.3
Q ss_pred HHHHHHHhhchhHHHHHHHHHhcC--------------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 10 AVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 10 c~~ii~~~FG~~v~~V~~~Ll~~G--------------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
...+..-.+.+..++|+.+|+... ++|-.+|+..+++++..|-..|-.|.+.|++.
T Consensus 129 ~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 129 SEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 344455577889999999998531 57889999999999999999999999999997
No 311
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=39.73 E-value=77 Score=28.27 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHhcC---------------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 8 KHAVHVITNHFGDLVAKVCECLLRKG---------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 8 ~Lc~~ii~~~FG~~v~~V~~~Ll~~G---------------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+...+..-.+.+..++++.+|+... ++|..+|+...++++..|-..|-.|.+.|++.
T Consensus 122 ~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 122 SCMRTIEDLMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 33344455567889999999998643 37889999999999999999999999999997
No 312
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=39.63 E-value=61 Score=25.57 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 113 CVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 113 a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
-+.|+.-+=....++-.+|+..+.+....--..+...++..+..|++.+||.|.+
T Consensus 28 ~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~ 82 (92)
T 1iuy_A 28 EAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82 (92)
T ss_dssp HHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred eeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCC
Confidence 3556666666777777777777665332111236788999999999999999985
No 313
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=39.61 E-value=2.4e+02 Score=26.30 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhcC--CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhch
Q 009725 21 LVAKVCECLLRKG--PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRF 98 (527)
Q Consensus 21 ~v~~V~~~Ll~~G--~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~ 98 (527)
+..+|...+-..| +.++.+|....+++.+.++..|-.|++.|.|.....+ .+|...
T Consensus 142 ~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~------------~~~~~~---------- 199 (258)
T 1lva_A 142 LLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE------------FYWHRQ---------- 199 (258)
T ss_dssp HHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS------------BEEEHH----------
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC------------eEEcHH----------
Confidence 4566777776667 5578999999999999999999999999988632221 344322
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009725 99 AKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (527)
Q Consensus 99 p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v 166 (527)
.|......|.+.+ .+|.+|+.++-+.+.. ++--.-..+.-|=+.||..|+
T Consensus 200 ---------~~~~~~~~l~~~~-~~~~it~a~~Rd~lg~--------SRK~aIplLE~~Dr~g~TrR~ 249 (258)
T 1lva_A 200 ---------ALGEAREVIKNLA-STGPFGLAEARDALGS--------SRKYVLPLLEYLDQVKFTRRV 249 (258)
T ss_dssp ---------HHHHHHHHHHHHH-TTSCBCHHHHHHHHTC--------CHHHHHHHHHHHHHTTSEEEE
T ss_pred ---------HHHHHHHHHHHHH-hcCCcCHHHHHHHhCC--------cHHHHHHHHHHHhhcCceeee
Confidence 2333344555556 8899999999887643 344444556666667777776
No 314
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=39.37 E-value=28 Score=29.21 Aligned_cols=32 Identities=9% Similarity=0.339 Sum_probs=29.9
Q ss_pred CC-CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 34 PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 34 ~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++ |..+|+...+++...||.||..|.+.|+|.
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~ 59 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLVEAGILY 59 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 45 788999999999999999999999999997
No 315
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=39.10 E-value=21 Score=29.88 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.2
Q ss_pred cchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEecc
Q 009725 401 LETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVT 438 (527)
Q Consensus 401 ~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt 438 (527)
....+|++...++..++...+..|.+.|||....-++.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~ 89 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDE 89 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECC
Confidence 49999999999999999999999999999988765554
No 316
>2nr3_A Hypothetical protein; APC84902, conserved domain, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} PDB: 3bz6_A
Probab=38.98 E-value=41 Score=29.87 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=40.7
Q ss_pred hhchhHHHHHHHHHhcCCCCHHHHHhhcC-C----CHHHHHHHHHHHHhccccc
Q 009725 17 HFGDLVAKVCECLLRKGPLTRQNVKRYTE-L----SDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 17 ~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~-l----~~~~Vr~~L~vLiQhn~V~ 65 (527)
.|.+--..|.-.|+-||++|..+|-..++ | +...|...|--|+++.+|.
T Consensus 105 ~l~~~e~All~~LlLRGpQT~gELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lV~ 158 (183)
T 2nr3_A 105 ELVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLAT 158 (183)
T ss_dssp TCCHHHHHHHHHHHHHCSEEHHHHHHHTTTTSCCSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhcCCCChHHHHHhhhcCCcCCCHHHHHHHHHHHhhCcHHH
Confidence 45566667788899999999999976664 2 6799999999999999886
No 317
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=38.27 E-value=22 Score=29.68 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=29.1
Q ss_pred CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 36 TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 36 tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+..+|+...+++...||.||-.|.+.|+|.
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L~~~Gli~ 66 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKELEAQKVIR 66 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 899999999999999999999999999997
No 318
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=38.06 E-value=23 Score=29.74 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=31.0
Q ss_pred hcC-CC-CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 31 RKG-PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 31 ~~G-~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.-| ++ |..+|+...+++...||.||..|.+.|+|.
T Consensus 33 ~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~ 69 (134)
T 4ham_A 33 QEGEKILSIREFASRIGVNPNTVSKAYQELERQEVII 69 (134)
T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 344 45 578999999999999999999999999997
No 319
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=37.99 E-value=15 Score=34.90 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=37.3
Q ss_pred hHHHHHHHHH---h-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 21 LVAKVCECLL---R-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 21 ~v~~V~~~Ll---~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.+.+...+|- . .+++|+.+|++.++++.+.|..-|-.|.++|+|..
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~ 68 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVAT 68 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3444444442 2 46799999999999999999999999999999973
No 320
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.81 E-value=33 Score=27.31 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCC--CCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 23 AKVCECLLRKGP--LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 23 ~~V~~~Ll~~G~--~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
..|..++-..|. .+..+|...++|+...|..+|-.|...++|....
T Consensus 40 ~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 40 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 356777777665 8999999999999999999999999999998443
No 321
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.81 E-value=1.1e+02 Score=28.74 Aligned_cols=88 Identities=13% Similarity=0.116 Sum_probs=63.4
Q ss_pred HcCCch--HHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccC-CCCceEEEEEEchHHHH
Q 009725 382 RYGRDA--YRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQILW 456 (527)
Q Consensus 382 ~~G~~~--~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~-~~~~t~~lw~v~~~~~~ 456 (527)
.||--. ..|+..|.++ +.+ .+++|++...+....+=.++-+|.+.|||.= +.+ ...|.++++-.+.-
T Consensus 29 ~~~lt~~q~~vL~~L~~~~~~~~-~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R----~~~~~DrR~~~i~LT~~G--- 100 (250)
T 1p4x_A 29 EVDMTIKEFILLTYLFHQQENTL-PFKKIVSDLCYKQSDLVQHIKVLVKHSYISK----VRSKIDERNTYISISEEQ--- 100 (250)
T ss_dssp TCSSCHHHHHHHHHHHSCSCSEE-EHHHHHHHSSSCGGGTHHHHHHHHHTTSCEE----EECSSSTTSEEEECCHHH---
T ss_pred hcCCCHHHHHHHHHHHhcCCCCc-CHHHHHHHHCCCHhhHHHHHHHHHHCCCEEe----cCCCCCCCeEEEEECHHH---
Confidence 345433 4677777664 356 9999999999999999999999999999932 323 66788877766543
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009725 457 KHVLDEMFHAALNLSLRVSYE 477 (527)
Q Consensus 457 ~~~~~~~yk~~~nl~~R~~~e 477 (527)
..+++.+......++.....|
T Consensus 101 ~~~~~~~~~~~~~~~eq~s~E 121 (250)
T 1p4x_A 101 REKIAERVTLFDQIIKQFNLA 121 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 335667777666666555554
No 322
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.65 E-value=21 Score=29.79 Aligned_cols=36 Identities=8% Similarity=0.093 Sum_probs=32.2
Q ss_pred hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 397 SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 397 k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+.+ ...+|++...++...+...+.+|.+.|||.-.
T Consensus 29 ~~~~-s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 29 GEGA-KINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp TSCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 3455 99999999999999999999999999999653
No 323
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=37.40 E-value=87 Score=25.56 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=40.9
Q ss_pred HHhcCCCCHHHHHhhc------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 29 LLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 29 Ll~~G~~tl~~i~~~t------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
++..|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.......++ .+...+|++-..+
T Consensus 19 lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~-----g~~rk~Y~LT~~G 82 (117)
T 4esf_A 19 IISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDM-----GPPRKFYSLNEAG 82 (117)
T ss_dssp HHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC----------CEEEEEECHHH
T ss_pred HHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCC-----CCCceEEEECHHH
Confidence 3446788888887764 78999999999999999999844322111 1225689888765
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=37.22 E-value=51 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHHHHHhc--CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhcccccccc
Q 009725 23 AKVCECLLRK--GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 23 ~~V~~~Ll~~--G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
..|..+|... +.+|..+|.... ++++..|-..|-.|.+.|+|.-..
T Consensus 20 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 20 LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4577888765 588999998764 789999999999999999998443
No 325
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=37.17 E-value=48 Score=29.48 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=39.9
Q ss_pred hchhHHHHHHHHHhcCCCCHHHHHhhcC-C----CHHHHHHHHHHHHhcccccc
Q 009725 18 FGDLVAKVCECLLRKGPLTRQNVKRYTE-L----SDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 18 FG~~v~~V~~~Ll~~G~~tl~~i~~~t~-l----~~~~Vr~~L~vLiQhn~V~~ 66 (527)
|-+--..|...|+-||++|..+|-..++ | +...|...|--|+++.+|..
T Consensus 106 l~~~e~All~~LlLRGpQT~GELRtRs~Rl~~F~d~~~Ve~~L~~L~~r~lv~~ 159 (183)
T 3bz6_A 106 LVPAQVILTGLLLLRGPQTVSELLTRSNRMHDFEDSEQVVHQLERLIARGLATL 159 (183)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTTTSCCSSHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHhcCCCChhHHHHhHhhccccCCHHHHHHHHHHHhcCCceee
Confidence 4455556778888999999999976654 2 67999999999999999873
No 326
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=37.03 E-value=5.4 Score=31.95 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=34.2
Q ss_pred HHHHHHHHhcC-CC-CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 23 AKVCECLLRKG-PL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 23 ~~V~~~Ll~~G-~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..|....+..| ++ +..+|++..+++...|+++|-.|.+.|+|.
T Consensus 22 ~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~ 66 (102)
T 1v4r_A 22 TLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVS 66 (102)
T ss_dssp HHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCE
T ss_pred HHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 33333333344 44 899999999999999999999999999997
No 327
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=36.88 E-value=14 Score=35.05 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=55.5
Q ss_pred hHHHHHHHHHh-CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH--HHHHH--HH
Q 009725 387 AYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHV--LD 461 (527)
Q Consensus 387 ~~RI~r~l~~k-~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~--~~~~~--~~ 461 (527)
+++|+++|... +.+ .-.+|++...+|...+..+|..|.+.|||.-. + +. |++...- +-... -.
T Consensus 16 ~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~--~------~~---Y~Lg~~~~~l~~~~~~~~ 83 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNP-TLAELATEAGLSRPAVRRILLTLQKLGYVAGS--G------GR---WSLTPRVLSIGQHYSESH 83 (257)
T ss_dssp HHHHHHTCSSSCSSC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T------TE---EEECGGGHHHHTTCCHHH
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC--C------CE---EEEcHHHHHHHHHhhccC
Confidence 56677776543 345 89999999999999999999999999999642 1 22 2333221 11111 13
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009725 462 EMFHAALNLSLRVSYELDREKE 483 (527)
Q Consensus 462 ~~yk~~~nl~~R~~~e~~~~k~ 483 (527)
.+...+.-.+.++..+......
T Consensus 84 ~l~~~a~p~l~~L~~~~~etv~ 105 (257)
T 2g7u_A 84 ALIEAAMPRLLEVAEKTQESAS 105 (257)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEE
T ss_pred cHHHHHHHHHHHHHHHHCCEEE
Confidence 4556666777777766554433
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.65 E-value=61 Score=27.34 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHHHHHhc-CCCCHHHHHhhc-----CCCHHHHHHHHHHHHhccccccccc
Q 009725 24 KVCECLLRK-GPLTRQNVKRYT-----ELSDEQVKNALLVLIQQNCVQAFTT 69 (527)
Q Consensus 24 ~V~~~Ll~~-G~~tl~~i~~~t-----~l~~~~Vr~~L~vLiQhn~V~~~~~ 69 (527)
.|.++|... +.+|..+|.... +++...|-..|-.|...|+|.....
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 467777764 688999997664 6999999999999999999985443
No 329
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=36.37 E-value=16 Score=31.86 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=41.4
Q ss_pred cCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 383 YGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
+...-.+|++.|...+.+ .+.+|++...++...+|+.+.+|..+|+|..
T Consensus 11 ~d~l~~~Il~~l~~~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHHCSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 444455788866555677 9999999999999999999999999999985
No 330
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=35.91 E-value=9.6 Score=36.25 Aligned_cols=90 Identities=8% Similarity=0.060 Sum_probs=57.7
Q ss_pred chHHHHHHHHHh-CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHHHHHHHH--H
Q 009725 386 DAYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQILWKHVLD--E 462 (527)
Q Consensus 386 ~~~RI~r~l~~k-~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~~~~~~~--~ 462 (527)
.+++|+++|... +.+ .-.+|++...+|...+..+|..|.+.|||.- .+.+ +. |.--...-.+-..... .
T Consensus 7 Ral~IL~~l~~~~~~l-sl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~----~~-Y~lG~~~~~lg~~~~~~~~ 78 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEI-GLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGA----RS-YRLGPQVLRLAALREASVP 78 (260)
T ss_dssp HHHHHHTTCBTTBSEE-EHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSS----SE-EEECTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCC----Cc-EEcCHHHHHHHHHHHhcCC
Confidence 356777777553 445 8999999999999999999999999999942 1211 22 2222222222233332 4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 009725 463 MFHAALNLSLRVSYELDREKE 483 (527)
Q Consensus 463 ~yk~~~nl~~R~~~e~~~~k~ 483 (527)
+...+.-.+.++..+......
T Consensus 79 l~~~a~p~l~~L~~~~getv~ 99 (260)
T 3r4k_A 79 ILSASRRVLRELSEDTGETTH 99 (260)
T ss_dssp HHHHHHHHHHHHHHHHSSEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEE
Confidence 566666777777776655433
No 331
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=35.61 E-value=56 Score=29.34 Aligned_cols=49 Identities=27% Similarity=0.289 Sum_probs=44.4
Q ss_pred hhchhH-HHHHHHHHhcC--------------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 17 HFGDLV-AKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 17 ~FG~~v-~~V~~~Ll~~G--------------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+++.. ++++.+|+... ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 143 ~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 206 (231)
T 3e97_A 143 AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILE 206 (231)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 678888 99999998753 57899999999999999999999999999997
No 332
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=35.55 E-value=66 Score=28.42 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHhhchhHHHHHHHHHh---cC-----CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 9 HAVHVITNHFGDLVAKVCECLLR---KG-----PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~---~G-----~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+...+..-.+.+.-.+++.+|+. .| ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 130 ~~~~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 194 (216)
T 4ev0_A 130 ADLELDLLSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVR 194 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33344455677888999999974 33 56899999999999999999999999999997
No 333
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=34.36 E-value=2e+02 Score=24.32 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=40.2
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhc--------CCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEch
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTT--------FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNR 452 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~a--------mi~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~ 452 (527)
--..|+.+|.. +.+ .-.+|.+.. -++...+-..|.+|.++|||.-...+....+.+.+| ++..
T Consensus 42 ~~~~IL~~L~~-~~~-~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y--~LT~ 112 (145)
T 1xma_A 42 VDTIILSLLIE-GDS-YGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYY--RITP 112 (145)
T ss_dssp HHHHHHHHHHH-CCE-EHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEE--EECH
T ss_pred HHHHHHHHHHh-CCC-CHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEE--EECH
Confidence 34556666643 444 444444433 478889999999999999998887664335556554 5553
No 334
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=34.11 E-value=1.7e+02 Score=24.79 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
.+--.|-..| ..|+++..+|.+.. +++...|-..|-.|.+.|+|.....+.++ .+...+|++-...
T Consensus 41 ~~~~~IL~~L-~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~-----~~~rk~Y~LT~~G 114 (145)
T 1xma_A 41 YVDTIILSLL-IEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQ-----GKRRTYYRITPEG 114 (145)
T ss_dssp THHHHHHHHH-HHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC-------CEEEEEEECHHH
T ss_pred cHHHHHHHHH-HhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCC-----CCCeEEEEECHHH
Confidence 3334444444 56899999987765 69999999999999999999843322111 1225678887654
No 335
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=34.06 E-value=98 Score=27.54 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=47.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHhcC--------------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 9 HAVHVITNHFGDLVAKVCECLLRKG--------------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~~G--------------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+...+..-.+.+..++++.+|+... ++|-.+|+...++++..|-..|-.|.+.|++.
T Consensus 148 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 148 TTRKASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 3344555677888999999998632 26889999999999999999999999999997
No 336
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=34.04 E-value=33 Score=32.09 Aligned_cols=121 Identities=18% Similarity=0.318 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHccchhhhcccccCCCccChHHHHHHhhhccc--CCCCCHHHHHHHHHHhccC--CCC--CCCCCcEEE
Q 009725 288 DGAANVLSAMLQATSSAEKKVKTKNSVPLSLSSIYEEVIKSEA--GRNMTLDHVRASLVQLGEL--SFV--DASSDSYSI 361 (527)
Q Consensus 288 ~~a~~v~~~~L~~~~~~~~~~~~~~s~p~s~~~I~~~l~~~~~--~~~~~~~~i~~~L~~La~~--~~~--~~~~~~y~V 361 (527)
+-|-+|++.++.-.. .++.-+++.++...+.+.-. ...++.+.|.+.++.|..= +|. .-| |.+.|
T Consensus 75 eLavqIvEvC~~tr~--------~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~-g~~~V 145 (234)
T 3cuq_A 75 ELGVQIIEVCLALKH--------RNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVG-GTYLI 145 (234)
T ss_dssp HHHHHHHHHHHHHHH--------HHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHH--------hcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEEC-CEEEE
Confidence 345555665555321 13557888898888865321 1467888888887776542 121 223 44433
Q ss_pred ehHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 362 DFEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 362 ~~~~i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
-.. -.-......+|+.+...+|++ ....+++....+..-|+..|..|.++|++-+=
T Consensus 146 qSv---------------p~el~~D~~~vLela~~~g~v-t~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD 201 (234)
T 3cuq_A 146 QSV---------------PAELNMDHTVVLQLAEKNGYV-TVSEIKASLKWETERARQVLEHLLKEGLAWLD 201 (234)
T ss_dssp ECS---------------CCCCCHHHHHHHHHHTTTSEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEE
T ss_pred EeC---------------CCccchHHHHHHHHHHhcCcC-cHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 111 011233334444444345666 99999999999999999999999999999543
No 337
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=33.96 E-value=74 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=47.6
Q ss_pred HHHHHHHHhhchhHHHHHHHHHhc----C-----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 9 HAVHVITNHFGDLVAKVCECLLRK----G-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~~----G-----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+...+..-.+.+..++++.+|+.. | ++|..+|+...++++..|-..|--|.+.|++.
T Consensus 127 ~~~~~~~l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 198 (220)
T 2fmy_A 127 SLTIINGLVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE 198 (220)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 334445556778899999998763 2 67899999999999999999999999999997
No 338
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=33.72 E-value=95 Score=27.75 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=46.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHh----cC----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 10 AVHVITNHFGDLVAKVCECLLR----KG----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 10 c~~ii~~~FG~~v~~V~~~Ll~----~G----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
-..+..-.+.+..++++..|+. .| ++|..+|+...++++..|-..|-.|.+.|++.
T Consensus 142 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 211 (232)
T 2gau_A 142 ERRTVTLTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLA 211 (232)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 3344445678899999999964 22 57889999999999999999999999999997
No 339
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=33.58 E-value=1.3e+02 Score=23.44 Aligned_cols=61 Identities=15% Similarity=0.184 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHHH
Q 009725 386 DAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQIL 455 (527)
Q Consensus 386 ~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~~ 455 (527)
.-.+|++.|...|.+ .-.+|++...++...+...|..|.+. +|.... . ++. .+|+++.+.+
T Consensus 28 ~Rl~IL~~l~~~~~~-~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~---~---gr~-~~y~l~~~~~ 88 (99)
T 2zkz_A 28 MRLKIVNELYKHKAL-NVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNR---Q---GLE-IYYSINNPKV 88 (99)
T ss_dssp HHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEE---E---TTE-EEEECCCHHH
T ss_pred HHHHHHHHHHHCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheE---e---CcE-EEEEEChHHH
Confidence 345788777777888 99999999999999999999999999 986542 1 333 3467776543
No 340
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=33.45 E-value=1e+02 Score=28.08 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHhhchhHHHHHHHHHh----cC-----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 9 HAVHVITNHFGDLVAKVCECLLR----KG-----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~----~G-----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+...+..-.+.+.-++|+.+|+. .| ++|..+|+...|+++..|-..|-.|.+.|+|.
T Consensus 137 ~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 137 YARQVAEMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILD 208 (250)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE
Confidence 33445556678899999999975 23 67999999999999999999999999999997
No 341
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=33.31 E-value=37 Score=31.02 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 24 KVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 24 ~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.|....-.+|+++..+|++..+++++.|...|-.|.+.|+|.+
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEE
Confidence 3444334578999999999999999999999999999999984
No 342
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=33.27 E-value=13 Score=35.21 Aligned_cols=86 Identities=6% Similarity=0.090 Sum_probs=54.6
Q ss_pred hHHHHHHHHH-hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchHH--HHHHHHH--
Q 009725 387 AYRIFRLLSK-SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQI--LWKHVLD-- 461 (527)
Q Consensus 387 ~~RI~r~l~~-k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~~--~~~~~~~-- 461 (527)
+++|+++|.. .+.+ .-.+|++...+|...+..+|..|.+.|||.-. +.. -|++...- +-.....
T Consensus 25 ~l~iL~~l~~~~~~~-~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~-------~~~---~Y~lg~~~~~lg~~~~~~~ 93 (260)
T 2o0y_A 25 VIDLLELFDAAHPTR-SLKELVEGTKLPKTTVVRLVATMCARSVLTSR-------ADG---SYSLGPEMLRWVRLAGRTW 93 (260)
T ss_dssp HHHHHTTCBTTBSSB-CHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEC-------TTS---CEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC-------CCC---eEEecHHHHHHHHHHHccC
Confidence 5667776643 3456 89999999999999999999999999999431 111 24444332 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009725 462 EMFHAALNLSLRVSYELDREKE 483 (527)
Q Consensus 462 ~~yk~~~nl~~R~~~e~~~~k~ 483 (527)
.+...+.-.+.++..+......
T Consensus 94 ~l~~~a~p~l~~L~~~~~etv~ 115 (260)
T 2o0y_A 94 APPEEVVDIMRQLSADTGETVN 115 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHHhHCCcEE
Confidence 3344555666676665554433
No 343
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=33.12 E-value=59 Score=29.07 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 22 VAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 22 v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
-..|.+.+-.+| +.|..+|++..+++...|..-|-.|.+.|++.
T Consensus 11 l~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 11 LLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 344555666677 68999999999999999999999999999997
No 344
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=33.04 E-value=82 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 387 AYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 387 ~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
...|++.|. .|.+ ...+|++...++...+-..|.+|.+.|+|+-.
T Consensus 26 ~l~IL~~L~-~g~~-~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~ 70 (146)
T 2f2e_A 26 SMLIVRDAF-EGLT-RFGEFQKSLGLAKNILAARLRNLVEHGVMVAV 70 (146)
T ss_dssp HHHHHHHHH-TTCC-SHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHH-hCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEE
Confidence 456888885 5788 99999999999999999999999999999644
No 345
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=32.91 E-value=1.1e+02 Score=26.73 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=47.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHhc----C----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 9 HAVHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 9 Lc~~ii~~~FG~~v~~V~~~Ll~~----G----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+...+..-.+.+.-++++.+|+.. | ++|-.+|+...++++..|-..|--|.+.|+|.
T Consensus 107 ~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 177 (202)
T 2zcw_A 107 AYRRIERLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIR 177 (202)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 344455556788999999999874 1 36889999999999999999999999999997
No 346
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=32.73 E-value=91 Score=28.38 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHhhchhHHHHHHHHHhc---------------CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 13 VITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 13 ii~~~FG~~v~~V~~~Ll~~---------------G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+..-.+.+.-++|+.+|+.. -++|..+|+..+++++..|-..|-.|.+.|+|.
T Consensus 157 ~~~l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 224 (243)
T 3la7_A 157 IETLAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS 224 (243)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE
Confidence 33445678889999999852 257889999999999999999999999999998
No 347
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=32.61 E-value=95 Score=26.88 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=48.2
Q ss_pred chHHHHHHHHHh--CCCcchhhhhhhcC-CCcccHHHHHHHHHhcccceEEEEeccC-CCCceEEEEEEchH
Q 009725 386 DAYRIFRLLSKS--GRLLETDKISDTTF-VEKKDAPKILYKLWKDGYLLMEKLVVTG-ARQSQFLLWKVNRQ 453 (527)
Q Consensus 386 ~~~RI~r~l~~k--~~l~eek~i~~~am-i~~k~~r~~L~~L~~~g~v~lQEvpkt~-~~~~t~~lw~v~~~ 453 (527)
.=.+|+..|+.+ +.. .-.+|.+.-- |+...++..|-.|.+.|+|+..+.+... ..++.-..|.+...
T Consensus 30 tR~~IL~~Ll~~p~~~~-ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~ 100 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVL-SVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGE 100 (151)
T ss_dssp HHHHHHHHHHHSTTSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHH
T ss_pred HHHHHHHHHHcCCCCCC-CHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHH
Confidence 335778888765 234 6777887766 8899999999999999999877776533 44455556666643
No 348
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=32.60 E-value=15 Score=35.06 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=54.6
Q ss_pred hHHHHHHHHHh-CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchH--HHHHHHH--H
Q 009725 387 AYRIFRLLSKS-GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ--ILWKHVL--D 461 (527)
Q Consensus 387 ~~RI~r~l~~k-~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~--~~~~~~~--~ 461 (527)
+++|+.+|... +.+ .-.+|++...+|...+..+|..|.+.|||.-. ++.| ++.+. .+-.... .
T Consensus 23 ~l~iL~~l~~~~~~~-~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~--------~~~Y---~Lg~~~~~lg~~~~~~~ 90 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRR-TLSDVARATDLTRATARRFLLTLVELGYVATD--------GSAF---WLTPRVLELGYSYLSSL 90 (265)
T ss_dssp HHHHHHTCCSSCSSE-EHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES--------SSEE---EECGGGGGTTHHHHTTC
T ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec--------CCEE---EEcHHHHHHHHHHHhcC
Confidence 55677666443 345 89999999999999999999999999999531 1222 22221 1111221 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 009725 462 EMFHAALNLSLRVSYELDREKE 483 (527)
Q Consensus 462 ~~yk~~~nl~~R~~~e~~~~k~ 483 (527)
.+...+.-.+.++..+......
T Consensus 91 ~l~~~a~p~l~~L~~~~getv~ 112 (265)
T 2ia2_A 91 SLPEVAQPHLEKLSHKVHESSS 112 (265)
T ss_dssp CHHHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHHHHHCCEEE
Confidence 4556666677777766554433
No 349
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=32.39 E-value=40 Score=29.46 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=35.2
Q ss_pred HHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 24 KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 24 ~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++.-+|..+ ++.|..+|+...++|+.-|++.|..|-+.|+|.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 344444433 468999999999999999999999999999997
No 350
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=32.18 E-value=87 Score=25.44 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhc------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+--.|-..| ..|+++-.+|.+.. ++++..|-.+|-.|.+.|+|.......++ .+...+|++-..+
T Consensus 10 l~~~IL~~L-~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~-----g~~rk~Y~LT~~G 80 (115)
T 4esb_A 10 LEGCILYII-SQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSL-----GPKRKYYHITDKG 80 (115)
T ss_dssp HHHHHHHHH-HHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTT-----SCEEEEEEECHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCC-----CCCcEEEEECHHH
Confidence 333344444 46788888887664 58999999999999999999843322211 1235689888665
No 351
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=31.87 E-value=47 Score=32.74 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|+..| ..|+.|+.+|++.+++++..++.-|-.|...|++.
T Consensus 41 i~~~l-~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~ 80 (374)
T 1qzz_A 41 LVDHL-LAGADTLAGLADRTDTHPQALSRLVRHLTVVGVLE 80 (374)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEE
Confidence 45666 56999999999999999999999999999999997
No 352
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=31.84 E-value=31 Score=34.54 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
.+|+++|. ++.+ .-.+|++...++...+.+++.+|.++|+|.-.+
T Consensus 23 ~~il~~l~-~~~~-sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 23 SRILKRIM-KSPV-SRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp CCSHHHHH-HSCB-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH-cCCc-CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 35889998 8888 999999999999999999999999999996544
No 353
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=31.67 E-value=62 Score=26.49 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcC------CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhH
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTE------LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNI 92 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~------l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~i 92 (527)
|.+--.|-..| ..|+.+-.+|.+... +++..|-..|-.|.+.|+|.....+.++ .+...+|++-..+-
T Consensus 13 g~l~~~IL~lL-~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~-----~~~rk~Y~lT~~G~ 86 (117)
T 3elk_A 13 GLITLYILKEL-VKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEK-----GQQLTVYHITDAGK 86 (117)
T ss_dssp HHHHHHHHHHH-HHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-C-----CCEEEEEEECHHHH
T ss_pred hHHHHHHHHHH-HcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCC-----CCCceEEEECHHHH
Confidence 34444454444 568888888877643 8899999999999999999854332111 12356898887653
No 354
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=31.50 E-value=2.1e+02 Score=23.18 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHhcCCCCHHHHHhhc------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 27 ECLLRKGPLTRQNVKRYT------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 27 ~~Ll~~G~~tl~~i~~~t------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
=.++..|+.+-.+|.+.. ++++..|-.+|-.|.+.|+|.....+.++ .+...+|++-...
T Consensus 19 L~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~-----g~~rk~Y~lT~~G 84 (116)
T 3hhh_A 19 LAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEK-----GPMRKFYRLTSSG 84 (116)
T ss_dssp HHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC-------CEEEEEEECHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCC-----CCCceEEEECHHH
Confidence 334457888888888775 68999999999999999999844322111 1234688888665
No 355
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.41 E-value=1.4e+02 Score=24.87 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=42.4
Q ss_pred HcCCc-hHHHHHHHHHhCCCcchhhhhhhc-CCCcccHHHHHHHHHhcccceEEEE
Q 009725 382 RYGRD-AYRIFRLLSKSGRLLETDKISDTT-FVEKKDAPKILYKLWKDGYLLMEKL 435 (527)
Q Consensus 382 ~~G~~-~~RI~r~l~~k~~l~eek~i~~~a-mi~~k~~r~~L~~L~~~g~v~lQEv 435 (527)
.+|.+ ...|++.|. .|.+ .-.+|++.. .|+.+..-..|-+|.+.|+|.-...
T Consensus 22 ~lg~kW~l~IL~~L~-~g~~-rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~ 75 (131)
T 4a5n_A 22 VIGGKWKGILFYHMI-DGKK-RFNEFRRICPSITQRMLTLQLRELEADGIVHREVY 75 (131)
T ss_dssp HHCSSSHHHHHHHHT-TSCB-CHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHcCcCHHHHHHHHh-cCCc-CHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEec
Confidence 34443 566778875 6788 999999999 9999999999999999999975533
No 356
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=31.34 E-value=79 Score=30.39 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|++.|- .|+.|..+|+..+++++..++.-|-.|..+|++.
T Consensus 31 i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~ 70 (335)
T 2r3s_A 31 VFTAIS-QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMT 70 (335)
T ss_dssp HHHHHT-TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHh-cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeE
Confidence 455554 4999999999999999999999999999999997
No 357
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=31.31 E-value=1e+02 Score=27.49 Aligned_cols=56 Identities=21% Similarity=0.298 Sum_probs=46.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHhc---------------CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 10 AVHVITNHFGDLVAKVCECLLRK---------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 10 c~~ii~~~FG~~v~~V~~~Ll~~---------------G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
...+..-.+.+..++++.+|+.. -++|-.+|+...++++..|-..|-.|.+.|+|.
T Consensus 138 ~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 208 (227)
T 3d0s_A 138 NNNLADLIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIR 208 (227)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 33444556788999999998852 157899999999999999999999999999997
No 358
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=31.21 E-value=39 Score=28.59 Aligned_cols=72 Identities=25% Similarity=0.319 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCch--HHHHHHHHH--hCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEE
Q 009725 375 VESVVSKRYGRDA--YRIFRLLSK--SGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKV 450 (527)
Q Consensus 375 le~~v~~~~G~~~--~RI~r~l~~--k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v 450 (527)
++..+ ..||-.. ++|+.+|.. .|.+ ...+|++...++...+-.++.+|.+.|||.-+.-| ...|..+++-.
T Consensus 24 ~~~~l-~~~gLt~~q~~vL~~L~~~~~~~~-t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~---~DrR~~~l~LT 98 (147)
T 4b8x_A 24 VDAVV-KPYGLTFARYEALVLLTFSKSGEL-PMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP---NDGRGTLATIT 98 (147)
T ss_dssp HHHHH-GGGTCCHHHHHHHHHHHTSGGGEE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-------CEEEEEC
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecC---CcCceeEEEEC
Confidence 34444 3466544 456666642 3456 99999999999999999999999999999655333 33566555444
Q ss_pred c
Q 009725 451 N 451 (527)
Q Consensus 451 ~ 451 (527)
+
T Consensus 99 ~ 99 (147)
T 4b8x_A 99 D 99 (147)
T ss_dssp H
T ss_pred H
Confidence 3
No 359
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=31.03 E-value=31 Score=34.75 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+|+++|..++.+ .-.+|++..-++...+.+++.+|.++|+|.-
T Consensus 19 ~~il~~l~~~~~~-sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPV-SRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSC-CHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4689999888888 9999999999999999999999999999865
No 360
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=30.95 E-value=49 Score=32.43 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|+..| ..|+.|..+|+..+++++..++.-|-.|...|++.
T Consensus 44 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 44 LVDHI-LAGARTVKALAARTDTRPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp HHHHH-HTTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEE
Confidence 45666 56899999999999999999999999999999997
No 361
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=30.80 E-value=1.3e+02 Score=27.58 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=72.0
Q ss_pred CCccChHHHHHHhhhcccCCCCCHHHHHHHHHHhccCC--C--CCCCCCcEEEehHHHHHHHHHHHHHHHHHHHcCCchH
Q 009725 313 SVPLSLSSIYEEVIKSEAGRNMTLDHVRASLVQLGELS--F--VDASSDSYSIDFEKIIEIAQNEEVESVVSKRYGRDAY 388 (527)
Q Consensus 313 s~p~s~~~I~~~l~~~~~~~~~~~~~i~~~L~~La~~~--~--~~~~~~~y~V~~~~i~~~lr~~~le~~v~~~~G~~~~ 388 (527)
+.-+++.|+...+.+.-...-++++.+.+.++.|..-+ | ..-++|.+.|--..-- ......
T Consensus 93 GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~---------------~~~~~~ 157 (218)
T 3cuq_B 93 GGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHK---------------EEEMVA 157 (218)
T ss_dssp TSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCC---------------GGGGHH
T ss_pred CCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCc---------------hHHHHH
Confidence 44688899988886643223478888988888886543 2 1345667655332110 111223
Q ss_pred HHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEE
Q 009725 389 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEK 434 (527)
Q Consensus 389 RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQE 434 (527)
+|..++...|.. +..+++.....+..-|++.|..|..+|++-+=+
T Consensus 158 ~il~~~~~~g~v-t~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~ 202 (218)
T 3cuq_B 158 SALETVSEKGSL-TSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDD 202 (218)
T ss_dssp HHHHHHHHTSCB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCc-CHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 344444344666 999999999999999999999999999997654
No 362
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=30.76 E-value=39 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.7
Q ss_pred HHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 393 LLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 393 ~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+.++|.-...++|++...++...++..|..|.+.|||.-.
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 44456755599999999999999999999999999999643
No 363
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=30.69 E-value=1.1e+02 Score=30.10 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHhc-CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 25 VCECLLRK-GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 25 V~~~Ll~~-G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
|++.|... |++|..+|+..+++++..++.-|-.|...+++..
T Consensus 33 lfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~ 75 (353)
T 4a6d_A 33 VFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKV 75 (353)
T ss_dssp HHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEE
Confidence 67778765 7899999999999999999999999999999974
No 364
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=30.57 E-value=56 Score=32.70 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=44.3
Q ss_pred HHHHHHc-CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 377 SVVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 377 ~~v~~~~-G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
..+..+. +..+.+|+..|.... .+.-+.+++...++...|+..|.+|.+.|+|.
T Consensus 288 ~~~~~~~~~~~~~~ll~~l~~~p-~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~ 342 (373)
T 2qc0_A 288 EYVRQQLPKIYSHELVQVIFEQP-YCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHHCTTTCCHHHHHHHHHCS-EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHhccchhHHHHHHHHHhCC-cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 3344444 566789999998754 44889999999999999999999999999994
No 365
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=30.30 E-value=64 Score=32.34 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHc-CCchHHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccce
Q 009725 378 VVSKRY-GRDAYRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLL 431 (527)
Q Consensus 378 ~v~~~~-G~~~~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~ 431 (527)
.+.+.. +..+.+++++|..++.+ .-+.+++...++...|+..|.+|.+.|++.
T Consensus 289 ~~~~~~~~~~~~~ll~~l~~~p~~-t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 289 YVRQQLPKIYSHELVQVIFEQPYC-RIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHCTTTCCHHHHHHHHHCSEE-EHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHhcCcHHHHHHHHHHHHCCCc-cHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 333333 34567899999887666 999999999999999999999999999994
No 366
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=30.15 E-value=40 Score=26.57 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 389 RIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 389 RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.|++.+. .| . .-.+|+..+.++...++..+..|.+.|||+..
T Consensus 12 ~IL~~i~-~~-~-~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 12 AILEACK-SG-S-PKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHT-TC-B-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH-cC-C-CHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4555553 45 5 99999999999999999999999999999654
No 367
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=29.96 E-value=46 Score=26.85 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHhCCCcc--hhhhhhhc-CCCcccHHHHHHHHHhcccceEE
Q 009725 385 RDAYRIFRLLSKSGRLLE--TDKISDTT-FVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 385 ~~~~RI~r~l~~k~~l~e--ek~i~~~a-mi~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-..+|++.|. .|.. . ..+|++.. .|+.+.+-..|-.|.+.|+|.-.
T Consensus 27 ~wrl~IL~~L~-~g~~-~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLG-NGST-RQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHT-SSSS-CBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHh-cCCC-CCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 33456888875 5766 6 99999999 89999999999999999999643
No 368
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=29.93 E-value=55 Score=31.65 Aligned_cols=40 Identities=10% Similarity=0.196 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|+..| ..|+.|+.+|++.+++++..++.-|-.|..+|++.
T Consensus 33 i~~~l-~~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~ 72 (334)
T 2ip2_A 33 LADLI-ESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQ 72 (334)
T ss_dssp HHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceE
Confidence 45666 45899999999999999999999999999999997
No 369
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.87 E-value=38 Score=34.44 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=41.2
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+|+++|..++.+ .-.+|++...++...+.+++.+|.++|+|.-.
T Consensus 42 ~~il~~l~~~~~~-sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPI-SRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSB-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5689999998888 99999999999999999999999999998543
No 370
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=29.87 E-value=39 Score=30.85 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=30.7
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 34 ~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++|-.+|+...+++..-||.||..|.+.|+|.
T Consensus 39 ~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~ 70 (222)
T 3ihu_A 39 RLVETDLVAHFGVGRNSVREALQRLAAEGIVD 70 (222)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 78889999999999999999999999999998
No 371
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=29.83 E-value=1.3e+02 Score=26.46 Aligned_cols=50 Identities=12% Similarity=0.246 Sum_probs=39.2
Q ss_pred cCCchHHHHHHHHHh----C----CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 383 YGRDAYRIFRLLSKS----G----RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 383 ~G~~~~RI~r~l~~k----~----~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+...-.|+-++|... | .+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 145 ~~~~~~Rl~~~L~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 145 WKSLDKRVASFLLEETSIEGTNELKI-THETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp HSCHHHHHHHHHHHHHHHHTSSEECC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHHHHhhhhcCCceecC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 444455666665432 2 55 89999999999999999999999999999764
No 372
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=29.08 E-value=1.1e+02 Score=26.59 Aligned_cols=53 Identities=32% Similarity=0.322 Sum_probs=44.4
Q ss_pred HHHHhhchhHHHHHHHHHhc----C----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 13 VITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 13 ii~~~FG~~v~~V~~~Ll~~----G----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+..-.+.+..++++.+|+.. | ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 129 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 129 VGDLAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 33446778889999998631 1 46889999999999999999999999999997
No 373
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=28.98 E-value=1.1e+02 Score=29.01 Aligned_cols=53 Identities=9% Similarity=0.000 Sum_probs=39.9
Q ss_pred HHhc-CCCCHHHHHhh---cCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 29 LLRK-GPLTRQNVKRY---TELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 29 Ll~~-G~~tl~~i~~~---t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
+..+ |.+++..|++. .+++...||.||..|.+.|.+.. ... + + ..+|.+....
T Consensus 36 ~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~-~~~--G------r-~~~Y~Lt~~g 92 (266)
T 3l09_A 36 SRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVES-RRL--G------R-VGFHRLSDSA 92 (266)
T ss_dssp HHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-EEE--T------T-EEEEEECHHH
T ss_pred hccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeee-eec--C------C-cceEEECHHH
Confidence 3455 57899998766 68999999999999999999973 322 1 1 3588887554
No 374
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=28.56 E-value=59 Score=25.64 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHH
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNAL 55 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L 55 (527)
--..|..+|..+| .|+.+|++..+++...|+..|
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 3457888888888 899999999999999999977
No 375
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.28 E-value=1.1e+02 Score=26.46 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=38.0
Q ss_pred HHHHHHHHhc-CCCCHHHHHhh-------cCCCHHHHHHHHHHHHhcccccccc
Q 009725 23 AKVCECLLRK-GPLTRQNVKRY-------TELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 23 ~~V~~~Ll~~-G~~tl~~i~~~-------t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
..|.++|... +.+|..+|... .++++..|-.+|-.|.+.|+|.-..
T Consensus 36 ~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 36 EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4577888876 78999999653 4689999999999999999998443
No 376
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=27.66 E-value=56 Score=25.84 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=41.0
Q ss_pred hhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccce
Q 009725 109 FDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVE 164 (527)
Q Consensus 109 yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~ 164 (527)
..+.|..|++ +..|.-|+.+|+..+..+.+.....-...+..-+..|.+.|||.
T Consensus 41 Ln~~a~~Iw~--l~DG~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I~ 94 (95)
T 3g2b_A 41 LDDIALVVAQ--RYDGTQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLLR 94 (95)
T ss_dssp CCTHHHHHHH--HCCSSSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCHHHHHHHH--HccCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCEe
Confidence 4567888887 46999999999999887655321123457888999999999985
No 377
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=27.21 E-value=1.9e+02 Score=25.49 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=42.3
Q ss_pred HHHHHcCCchHHHHHHHHHhC--------------CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 378 VVSKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 378 ~v~~~~G~~~~RI~r~l~~k~--------------~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
+..-.+...-.|+.++|..-. .+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 152 ~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~l-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 152 ASRLAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRV-SRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 333445556667777775421 14 78999999999999999999999999999765
No 378
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.90 E-value=1.1e+02 Score=26.47 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHcccCCHHHHHHHhhhcccCC------CccCHHHHHHHHHHHHhcccceecC
Q 009725 111 QQCVELVQGLLEHGRLTLKQMFDRAKSSEKEG------NLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 111 ~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~------~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
..++.++..++..|.....++.+.+..+...| ...+..-+++++.+|...|+|...|
T Consensus 53 ~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~ 115 (150)
T 2v7f_A 53 YRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP 115 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC
Confidence 56777888888888666666666665321111 1236778999999999999998875
No 379
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=26.84 E-value=75 Score=28.16 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred hHHHHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhccc-cc
Q 009725 21 LVAKVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNC-VQ 65 (527)
Q Consensus 21 ~v~~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~-V~ 65 (527)
--.+|...|...| +.|..+|++..+++.+.|+.=|-.|-+.|+ +.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3456777787664 599999999999999999999999999998 64
No 380
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=26.76 E-value=87 Score=24.38 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++..+..+||-+.|=-|+.+|++.+ ++..+.+....-.|-++|+-.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~GL~~ 71 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRGLSL 71 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTTCCS
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcCCCc
Confidence 5678999999999999999999886 578899999999999999854
No 381
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=26.74 E-value=1e+02 Score=25.20 Aligned_cols=60 Identities=3% Similarity=0.015 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHH---HhhhcccCCCccCHHHHHHHHHHHHhcccc
Q 009725 99 AKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFD---RAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163 (527)
Q Consensus 99 p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~---~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i 163 (527)
|.+..+-++.=.++-..|+..|...|.++-.+|-. .+....+ +.++|...-..|...||=
T Consensus 32 PLLALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~P-----s~eDI~RV~arLaa~GWP 94 (112)
T 2lky_A 32 PLLALLTRRLTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMP-----REEDIERVRRHLALQGWP 94 (112)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCC-----CHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHhcCCC
Confidence 33333335555677899999999999887555444 4444333 678899999999999995
No 382
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=26.60 E-value=84 Score=24.96 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 398 GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 398 ~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
+.+ ...+|++...|+.......|-+|.+.|||..
T Consensus 35 ~~~-s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r 68 (96)
T 2obp_A 35 TPW-SLPKIAKRAQLPMSVLRRVLTQLQAAGLADV 68 (96)
T ss_dssp CCC-BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCc-CHHHHHHHhCCchhhHHHHHHHHHHCCCEEe
Confidence 456 9999999999999999999999999999985
No 383
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=26.56 E-value=2e+02 Score=25.41 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=30.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 402 eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..++||+...++...+-.+|.+|.++|+|+..
T Consensus 182 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 182 SREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 89999999999999999999999999999654
No 384
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.43 E-value=1.3e+02 Score=24.13 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 112 QCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 112 ~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.-+.||.-+=....++-.+|+..+.+... -..+...++.++..|++.+||.|.+
T Consensus 32 iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~ 85 (101)
T 2do7_A 32 IDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDK 85 (101)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCC
Confidence 34667777777888888888887766432 1236788999999999999999985
No 385
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=26.30 E-value=2e+02 Score=25.97 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=40.2
Q ss_pred HcCCchHHHHHHHHHh---------------CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 382 RYGRDAYRIFRLLSKS---------------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k---------------~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+...-.||.++|..- -.+ ..++||+...++...+-.+|.+|.++|+|..+
T Consensus 161 ~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~l-t~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 161 AHRDMGSRLVSFLLILCRDFGVPCADGITIDLKL-SHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp HCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccC-CHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 3445555666666531 134 89999999999999999999999999999765
No 386
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=26.23 E-value=1.5e+02 Score=26.12 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=44.7
Q ss_pred HHHHHhhchhHHHHHHHHHhc------------CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 12 HVITNHFGDLVAKVCECLLRK------------GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 12 ~ii~~~FG~~v~~V~~~Ll~~------------G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.+..-.+.+.-++++.+|+.. -++|..+|+...|+++..|-..|-.|.+.|++.
T Consensus 144 ~~~~~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 144 EIETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 344445678889999988652 145778999999999999999999999999997
No 387
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=26.19 E-value=38 Score=34.85 Aligned_cols=68 Identities=13% Similarity=0.191 Sum_probs=52.2
Q ss_pred HcCCch--HHHHHHHHHh--CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEchH
Q 009725 382 RYGRDA--YRIFRLLSKS--GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVNRQ 453 (527)
Q Consensus 382 ~~G~~~--~RI~r~l~~k--~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~~~ 453 (527)
.||--. .+|++.|.++ +.+ ..++|++...++...+=.++-+|.+.|||.=+.-| ...|.++++-.+.-
T Consensus 399 ~~~lt~~q~~vl~~l~~~~~~~~-~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~---~D~R~~~i~lT~~g 470 (487)
T 1hsj_A 399 KFNLNYEEIYILNHILRSESNEI-SSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL---QDERTVIVYVTDTQ 470 (487)
T ss_dssp SCCCCHHHHHHHHHHHTCSCSEE-EHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC---SSSSCCEEECCSSH
T ss_pred hcCCCHHHHHHHHHHHhCCCCCc-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC---CCCCeEEEEECHHH
Confidence 455433 5788898887 778 99999999999999999999999999999433222 55777777655543
No 388
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.17 E-value=2.9e+02 Score=23.08 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=36.9
Q ss_pred HHHHHHHhcC-CCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 24 KVCECLLRKG-PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 24 ~V~~~Ll~~G-~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.|-.+|...| ..+..+|++..+++++.|-..+-.|.+.|+|.-..
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 3555666555 46779999999999999999999999999998433
No 389
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=25.88 E-value=1.8e+02 Score=25.21 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=40.8
Q ss_pred HHcCCchHHHHHHHHHhC--------------CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 381 KRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 381 ~~~G~~~~RI~r~l~~k~--------------~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
-.+....-||.++|..-. .+ ..++||+...++...+-.+|.+|.++|+|..+
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKI-TRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEecc-CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 345555667777665421 24 78999999999999999999999999999765
No 390
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=25.55 E-value=77 Score=33.67 Aligned_cols=47 Identities=4% Similarity=-0.050 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHhcCCCCHHHHHhhcC-------CCHHHHHHHHHHHHhccccc
Q 009725 19 GDLVAKVCECLLRKGPLTRQNVKRYTE-------LSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~~tl~~i~~~t~-------l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..+..+|.+.+-.+|..|..+|.+..+ .+....+..|-.+++.|+++
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~ 546 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLL 546 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEE
Confidence 456667777666789999999999999 99999999999999999997
No 391
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.35 E-value=81 Score=29.44 Aligned_cols=46 Identities=15% Similarity=0.004 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.....|-+..-..|..|..+|....+.+....+.+|-.|++.|+++
T Consensus 167 ~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lw 212 (233)
T 1u5t_A 167 SDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLW 212 (233)
T ss_dssp TTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSE
T ss_pred hHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3445555555568999999999999999999999999999999997
No 392
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=25.12 E-value=1.1e+02 Score=24.93 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=28.9
Q ss_pred CCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 412 VEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 412 i~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
++...+-..|.+|.++|+|.....+....|.+.+| ++.
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y--~lT 82 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVY--HIT 82 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEE--EEC
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEE--EEC
Confidence 67789999999999999999887654336666654 454
No 393
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=25.07 E-value=2.2e+02 Score=22.89 Aligned_cols=53 Identities=9% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009725 114 VELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (527)
Q Consensus 114 ~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v 166 (527)
..++-.+|..|-...-++.+.+.......-..+...+..++.+|.++|||.+.
T Consensus 14 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34455566779999999988876532111134788899999999999999886
No 394
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=24.99 E-value=2e+02 Score=22.46 Aligned_cols=48 Identities=6% Similarity=-0.002 Sum_probs=37.0
Q ss_pred HHHHHHHhhc---------------hhHHHHHHHHHhc-CCCCHHHHHhhc-CCCHHHHHHHHHH
Q 009725 10 AVHVITNHFG---------------DLVAKVCECLLRK-GPLTRQNVKRYT-ELSDEQVKNALLV 57 (527)
Q Consensus 10 c~~ii~~~FG---------------~~v~~V~~~Ll~~-G~~tl~~i~~~t-~l~~~~Vr~~L~v 57 (527)
....|.++|| -.+..|+=+|... ..+||++|.+.. +-+.+.|-+|+-.
T Consensus 6 I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 4456778888 3466788888877 788999999998 6888888777654
No 395
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous dispersion, cancer/testis 1.4, melanoma antigen family A 4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Probab=24.98 E-value=34 Score=32.21 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=25.0
Q ss_pred ccHHHHH-HHHHhcccceEEEEeccCCCCceEEEEEE
Q 009725 415 KDAPKIL-YKLWKDGYLLMEKLVVTGARQSQFLLWKV 450 (527)
Q Consensus 415 k~~r~~L-~~L~~~g~v~lQEvpkt~~~~~t~~lw~v 450 (527)
-+.|++| ..|.++||++-+.||.+ .|.+..|+|--
T Consensus 164 G~~rklit~~~Vkq~YLe~~qv~~s-dp~~~ef~WGp 199 (240)
T 2wa0_A 164 GEPRKLLTQDWVQENYLEYRQVPGS-NPARYEFLWGP 199 (240)
T ss_dssp BCHHHHHHTHHHHTTSEEEECC-------CCEEEECH
T ss_pred CCHHHHHHHHHHHcCCeEEEeecCC-CCCeEEEEEcC
Confidence 3588999 78999999999988877 77788999974
No 396
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=24.96 E-value=1.1e+02 Score=28.12 Aligned_cols=55 Identities=25% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHhhchhHHHHHHHHHhc----C----------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 11 VHVITNHFGDLVAKVCECLLRK----G----------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 11 ~~ii~~~FG~~v~~V~~~Ll~~----G----------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..+..-.+.+..++|+.+|+.. | ++|..+|+...++++..|-..|-.|.+.|+|.
T Consensus 180 ~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 180 EKVGNLAFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3444556778889999998752 1 57889999999999999999999999999997
No 397
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=24.82 E-value=75 Score=30.67 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|++.|- .|+.|..+|+..+++++..++.-|-.|..+|++.
T Consensus 30 lf~~l~-~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~ 69 (332)
T 3i53_A 30 VADHIA-AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFT 69 (332)
T ss_dssp HHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEE
Confidence 666664 5899999999999999999999999999999997
No 398
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=24.71 E-value=2.8e+02 Score=22.41 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhhHHHHhchhhH
Q 009725 22 VAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDNILHRVRFAKF 101 (527)
Q Consensus 22 v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~il~rlR~p~~ 101 (527)
..+|...+-. ++.+.+++....+++.+.++..|-.|.+.|.|..-... .+|...
T Consensus 9 ~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~------------~~~~~~------------- 62 (121)
T 2pjp_A 9 WQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD------------RYYRND------------- 62 (121)
T ss_dssp HHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT------------EEEEHH-------------
T ss_pred HHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC------------ceECHH-------------
Confidence 3444444422 56689999999999999999999999999988632211 233222
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceec
Q 009725 102 LTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERC 166 (527)
Q Consensus 102 i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v 166 (527)
.+......|.+.+-.+|.+|+.++-+.+.. ++.-.-..+.-|=..||..+.
T Consensus 63 ------~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~--------sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 63 ------RIVEFANMIRDLDQECGSTCAADFRDRLGV--------GRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp ------HHHHHHHHHHHHHHHHSSEEHHHHHHHHTS--------CHHHHHHHHHHHHHHTSEEEE
T ss_pred ------HHHHHHHHHHHHHHHCCCccHHHHHHHHCC--------cHHHHHHHHHHHhhcCCeEee
Confidence 232334555556667899999888877632 344333444445556666555
No 399
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=24.58 E-value=2.4e+02 Score=22.69 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=41.0
Q ss_pred HHHhcCCCCHHHHHhhc-------CCCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 28 CLLRKGPLTRQNVKRYT-------ELSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 28 ~Ll~~G~~tl~~i~~~t-------~l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
.++..|+..-.+|.+.. +++...|-..|-.|.+.|+|.......+++ .+...+|++-..+
T Consensus 29 ~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~----~~~rk~Y~LT~~G 95 (115)
T 2dql_A 29 YVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGR----GRPRRMYQVSPEW 95 (115)
T ss_dssp HHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTC----SSCEEEEEECGGG
T ss_pred HHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCC----CCCcEEEEECHHH
Confidence 34456888777765543 589999999999999999998433221111 1235789888765
No 400
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=24.57 E-value=68 Score=31.43 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 25 VCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 25 V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|+..|- .|+.|+.+|++.+++++..++.-|-.|..+|++.
T Consensus 56 if~~L~-~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~ 95 (359)
T 1x19_A 56 LFSHMA-EGPKDLATLAADTGSVPPRLEMLLETLRQMRVIN 95 (359)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHc-CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeE
Confidence 455554 4999999999999999999999999999999997
No 401
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=24.55 E-value=39 Score=30.76 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=30.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 34 ~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+++-.+|+...+++...||.||..|.+.|+|.
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 66 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQLATEGLVK 66 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67789999999999999999999999999998
No 402
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=24.12 E-value=1.5e+02 Score=25.62 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=39.8
Q ss_pred HcCCchHHHHHHHHHh----C----------CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 382 RYGRDAYRIFRLLSKS----G----------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k----~----------~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+...--|+.++|..- | .+ ..++||+...++...+-.+|.+|.++|+|...
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTV-SHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 3455556676666541 1 24 88999999999999999999999999999654
No 403
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.01 E-value=1.6e+02 Score=24.43 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=34.9
Q ss_pred HHHHHHhhchhHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHH
Q 009725 11 VHVITNHFGDLVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVL 58 (527)
Q Consensus 11 ~~ii~~~FG~~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vL 58 (527)
...+.+.+.+.-..|+. + ....+|..+|+...+++.+.|+..+...
T Consensus 103 ~~~l~~~L~~~~r~v~~-~-~~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 103 KKFSENNFSKFEKEVLT-Y-LIRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp HHHHHHHSCHHHHHHHH-H-HTTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHH-H-HHcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444577788888888 5 4456699999999999999988776543
No 404
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=23.98 E-value=57 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++++..+|+...+++...||.+|..|.+.|+|.
T Consensus 48 ~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~ 80 (237)
T 3c7j_A 48 TALRQQELATLFGVSRMPVREALRQLEAQSLLR 80 (237)
T ss_dssp CBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 478999999999999999999999999999998
No 405
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=23.93 E-value=1.1e+02 Score=24.72 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccc
Q 009725 98 FAKFLTILSQEFDQQCVELVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYV 163 (527)
Q Consensus 98 ~p~~i~~i~~~yG~~a~~I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i 163 (527)
+|-+..+-++.=.++-..|+..|...|.++-.+|-..+..-.. ...+.++|...-..|...||=
T Consensus 29 ~PLlALL~r~Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~--~~Ps~eDI~RV~arLaa~GWP 92 (103)
T 2kvc_A 29 FAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTD--ELPSPEDVERVRARLAAQGWP 92 (103)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCS--SCSCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHhcCCC
Confidence 3433333355556778999999999998886666655543211 122678899999999999994
No 406
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=23.75 E-value=2.3e+02 Score=24.52 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=42.0
Q ss_pred HHHcCCchHHHHHHHHHhC--------------CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 380 SKRYGRDAYRIFRLLSKSG--------------RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 380 ~~~~G~~~~RI~r~l~~k~--------------~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.-.+...-.|+.++|..-. .+ .+++||+...++...+-.+|.+|.++|+|...
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKA-THDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 3345566678887776521 24 88999999999999999999999999999754
No 407
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.27 E-value=76 Score=27.42 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcC--------------CCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTE--------------LSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~--------------l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.-++.+...++.+|+.-..+|.+..+ .+...||.||-.|.+.|+|.
T Consensus 53 ~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~ 112 (150)
T 2v7f_A 53 YRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVE 112 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEE
Confidence 34555555566677666788988888 99999999999999999997
No 408
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=23.23 E-value=2.3e+02 Score=21.58 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCC----CCHHHHHhh--------cCCCHHHHHHHHHHHHhcccccccccc
Q 009725 21 LVAKVCECLLRKGP----LTRQNVKRY--------TELSDEQVKNALLVLIQQNCVQAFTTE 70 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~----~tl~~i~~~--------t~l~~~~Vr~~L~vLiQhn~V~~~~~~ 70 (527)
-+..|.+..-..|. +|+.+|... -+|+...++.||-+|.+.|=+.-|..+
T Consensus 10 Wa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~~ 71 (79)
T 3htu_A 10 WGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVS 71 (79)
T ss_dssp HHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEecC
Confidence 45566666667775 499999874 268999999999999999988766544
No 409
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=23.11 E-value=1.2e+02 Score=22.77 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhcccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCV 64 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V 64 (527)
++..+..+||-+.|=-|+.+|++.+ ++.++.+....-.|-++|+-
T Consensus 15 ~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~gl~ 67 (73)
T 1z3e_B 15 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLG 67 (73)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Confidence 5788999999999999999998885 57788888888888888864
No 410
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=23.07 E-value=97 Score=31.66 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=40.7
Q ss_pred HHHHHHHhc--CCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 24 KVCECLLRK--GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 24 ~V~~~Ll~~--G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
.|-.+|..+ |++|..+|++.++++...|-..|-.|.+.|+|.-..
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 577788888 999999999999999999999999999999998433
No 411
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=23.07 E-value=36 Score=31.14 Aligned_cols=43 Identities=14% Similarity=0.344 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 390 IFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 390 I~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
|+.+...++.+ ..++|++...++...+...+.+|.+.|||.-.
T Consensus 11 I~~l~~~~~~~-~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 11 LYELGTRHNKI-TNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp HHHTTSSCSCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCc-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEEe
Confidence 44444344556 99999999999999999999999999999554
No 412
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=22.75 E-value=81 Score=31.06 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHhhchhHHH---------HHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 10 AVHVITNHFGDLVAK---------VCECLLR-KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 10 c~~ii~~~FG~~v~~---------V~~~Ll~-~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+..+.+-.||..... |++.|-. .|+.|..+|+..+++++..++.-|-.|.-.|++.
T Consensus 16 ~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~ 81 (363)
T 3dp7_A 16 QRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTIL 81 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeE
Confidence 445666667766554 4455655 4899999999999999999999999999999996
No 413
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.66 E-value=69 Score=27.05 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=29.3
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
|++|..+|++..++++..|-..+-.|.+.|+|.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 458999999999999999999999999999995
No 414
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.35 E-value=2.6e+02 Score=24.58 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred HcCCchHHHHHHHHHh---------------CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 382 RYGRDAYRIFRLLSKS---------------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 382 ~~G~~~~RI~r~l~~k---------------~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.+...-.|+.++|..- -.+ ..++||+...++...+-.+|.+|.++|+|...
T Consensus 145 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~-t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 145 IFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDL-TQEEIAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp HHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 3455556666666531 134 89999999999999999999999999999664
No 415
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=22.30 E-value=1.1e+02 Score=25.09 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHhcCC-CCHHHHHhhcCCCHHHHHHHHHHHHhcccccccc
Q 009725 19 GDLVAKVCECLLRKGP-LTRQNVKRYTELSDEQVKNALLVLIQQNCVQAFT 68 (527)
Q Consensus 19 G~~v~~V~~~Ll~~G~-~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~~~ 68 (527)
|+....|...|-..|. .+..+|.+.++++..++...|-.|+..+=|..+.
T Consensus 1 ~~~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (135)
T 2v9v_A 1 GSPEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp CCHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 4455556666666654 3349999999999999999999999988766443
No 416
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.10 E-value=1.3e+02 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.143 Sum_probs=29.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 402 eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 7899999999999999999999999999844
No 417
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=22.08 E-value=85 Score=29.27 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCC-CHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 33 GPL-TRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 33 G~~-tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
.++ +-.+|+...+++...||+||..|.+.|+|.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~ 67 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVE 67 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 366 789999999999999999999999999997
No 418
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=22.04 E-value=2e+02 Score=26.04 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHcCCchHHHHHHHHH----h-----------CCCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 381 KRYGRDAYRIFRLLSK----S-----------GRLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 381 ~~~G~~~~RI~r~l~~----k-----------~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
-.+...-.||.++|.. . -.+ ..++||+...++...+-.+|.+|.++|+|+..
T Consensus 144 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~-t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 144 MNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPL-SQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCC-CHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 3455556677777643 1 245 89999999999999999999999999999654
No 419
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=21.99 E-value=1.3e+02 Score=26.39 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=37.4
Q ss_pred chHHHHHHHHH---hC-----CCcchhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 386 DAYRIFRLLSK---SG-----RLLETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 386 ~~~RI~r~l~~---k~-----~l~eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
.--|+.++|.. .+ .+ ..++||+...++...+-.+|.+|.++|+|+.+
T Consensus 142 ~~~Rl~~~L~~~~~~~~~~~~~~-t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQGLGPLFQI-RHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhhcCCccCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 34466666642 22 34 89999999999999999999999999999754
No 420
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.77 E-value=2.7e+02 Score=24.89 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH---------------hC-CCcchhhhhhhcCCCc-ccHHHHHHHHH
Q 009725 363 FEKIIEIAQNEEVESVVSKRYGRDAYRIFRLLSK---------------SG-RLLETDKISDTTFVEK-KDAPKILYKLW 425 (527)
Q Consensus 363 ~~~i~~~lr~~~le~~v~~~~G~~~~RI~r~l~~---------------k~-~l~eek~i~~~ami~~-k~~r~~L~~L~ 425 (527)
+-+.+..--....+.+..-.+...-.||.++|.. .- .+ ..++||+...++. ..+-.+|.+|.
T Consensus 117 ~~~~l~~~l~~~~~~~~~~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~-t~~~lA~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 117 VFQTLQKQVSYSLAKFNDFSINGKLGSICSQLLILTYVYGKETPDGIKITLDNL-TMQELGYSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCC-CHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccC-CHHHHHHHhCCChHHHHHHHHHHHH
Q ss_pred hcccceEE
Q 009725 426 KDGYLLME 433 (527)
Q Consensus 426 ~~g~v~lQ 433 (527)
++|+|...
T Consensus 196 ~~glI~~~ 203 (238)
T 2bgc_A 196 QEKVIVYK 203 (238)
T ss_dssp HTTSEEEE
T ss_pred HCCCEEec
No 421
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.73 E-value=3e+02 Score=23.66 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=30.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 402 eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..++||+...++...+-.+|.+|.++|+|+..
T Consensus 166 t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 166 TRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 88999999999999999999999999999765
No 422
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.72 E-value=80 Score=28.29 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=30.2
Q ss_pred chhhhhhhcCCCcccHHHHHHHHHhcccceEE
Q 009725 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLME 433 (527)
Q Consensus 402 eek~i~~~ami~~k~~r~~L~~L~~~g~v~lQ 433 (527)
..++||+...++...+-.+|.+|.++|+|..+
T Consensus 177 t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 177 GTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 89999999999999999999999999999654
No 423
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=21.54 E-value=84 Score=24.05 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhc--------CCCHHHHHHHHHHHHhccccc
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYT--------ELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t--------~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
++..+..+||-+.|=-|+.+|++.+ ++-.+.+....-.|-++|+-.
T Consensus 22 ~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~Gl~l 75 (79)
T 3gfk_B 22 DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEELGLGL 75 (79)
T ss_dssp CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHcCCCC
Confidence 5678999999999999999998885 467788888888888888753
No 424
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=21.50 E-value=1.5e+02 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCcccHHHHHHHHHhcccceEEEEeccCCCCceEEEEEEc
Q 009725 411 FVEKKDAPKILYKLWKDGYLLMEKLVVTGARQSQFLLWKVN 451 (527)
Q Consensus 411 mi~~k~~r~~L~~L~~~g~v~lQEvpkt~~~~~t~~lw~v~ 451 (527)
-++...+-..|.+|.++|+|.-...+....|.|.+| ++.
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y--~LT 79 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFY--SLN 79 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEE--EEC
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEE--EEC
Confidence 467788999999999999998876654335667654 554
No 425
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=21.41 E-value=1.2e+02 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=29.3
Q ss_pred chhhhhhhcCCCcccHHHHHHHHHhcccceE
Q 009725 402 ETDKISDTTFVEKKDAPKILYKLWKDGYLLM 432 (527)
Q Consensus 402 eek~i~~~ami~~k~~r~~L~~L~~~g~v~l 432 (527)
.+.+|++.-.++...+|+.|..|..+|+|..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 7899999999999999999999999999954
No 426
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=21.24 E-value=1.8e+02 Score=25.30 Aligned_cols=52 Identities=12% Similarity=-0.068 Sum_probs=38.3
Q ss_pred HHHHHHHcccCCHHHHHHHhhhcccCCCccCHHHHHHHHHHHHhcccceecC
Q 009725 116 LVQGLLEHGRLTLKQMFDRAKSSEKEGNLVDLDSLRETLVKLVTAHYVERCP 167 (527)
Q Consensus 116 I~~~lL~~G~~~~~~li~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~~i~~v~ 167 (527)
.|-.+|..|-++..++.+.+.......-..+...|...+.+|.++|||.+..
T Consensus 6 ~iL~lL~~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 6 VILTVLSTRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 3445556699999999988754322111347889999999999999998864
No 427
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=21.22 E-value=37 Score=30.40 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=4.9
Q ss_pred HHHHHHhhchhHHHHHHHHHhcC--------CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 11 VHVITNHFGDLVAKVCECLLRKG--------PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 11 ~~ii~~~FG~~v~~V~~~Ll~~G--------~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
..+..-.+.+..++++.+|+... ++|..+|+...++++..|-..|-.|.+.|++.
T Consensus 133 ~~~~~l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 133 EKLFFLTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIE 195 (213)
T ss_dssp HHHHHHHCC------------------------------------------------------
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE
Confidence 34445567788889999998754 67889999999999999999999999999997
No 428
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=21.18 E-value=98 Score=28.15 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=33.1
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHHhcccccc
Q 009725 32 KGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQA 66 (527)
Q Consensus 32 ~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~~ 66 (527)
.++.+-.+|++..+++++.|+..+-.|-..|+|.|
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 57889999999999999999999999999999985
No 429
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=21.11 E-value=79 Score=28.00 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCcchhhhhhhcCCCcccHHHHHHHHHhccc-ceE
Q 009725 388 YRIFRLLSKSGRLLETDKISDTTFVEKKDAPKILYKLWKDGY-LLM 432 (527)
Q Consensus 388 ~RI~r~l~~k~~l~eek~i~~~ami~~k~~r~~L~~L~~~g~-v~l 432 (527)
.+|+++|...+..+.-++|++..-++...++.-+..|.+.|+ |.-
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 468888876555339999999999999999999999999999 743
No 430
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=20.97 E-value=95 Score=28.97 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=39.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 21 LVAKVCECLLRKGPLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 21 ~v~~V~~~Ll~~G~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
....|.+..-..|..|..+|....+.+....+.+|-.|++.|+++
T Consensus 155 D~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllw 199 (234)
T 3cuq_A 155 DHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAW 199 (234)
T ss_dssp HHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 344555555568999999999999999999999999999999997
No 431
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=20.64 E-value=73 Score=29.47 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=30.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHHHHHHHhccccc
Q 009725 34 PLTRQNVKRYTELSDEQVKNALLVLIQQNCVQ 65 (527)
Q Consensus 34 ~~tl~~i~~~t~l~~~~Vr~~L~vLiQhn~V~ 65 (527)
+++-.+|+...+++...||.||..|.+.|+|.
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~ 82 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQILIEDRLVA 82 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 67889999999999999999999999999998
No 432
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=20.49 E-value=78 Score=28.05 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHhhcC-CCHHHHHHHHHHHHhcccccccccccCCCCCCCCCcceEEEeehhh
Q 009725 20 DLVAKVCECLLRKGPLTRQNVKRYTE-LSDEQVKNALLVLIQQNCVQAFTTEQPDGFADGPKANTQYVVLFDN 91 (527)
Q Consensus 20 ~~v~~V~~~Ll~~G~~tl~~i~~~t~-l~~~~Vr~~L~vLiQhn~V~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 91 (527)
|+=-+|...| ..|++|..+|+...+ ++.+.|-+=|-+|-++|+|..-.....+ ....-+|.+....
T Consensus 23 P~Rl~il~~L-~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~-----g~~er~y~~~~~~ 89 (182)
T 4g6q_A 23 PLRWRITQLL-IGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVR-----GAVERTYTLNTQA 89 (182)
T ss_dssp HHHHHHHHHT-TTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEET-----TEEEEEEEECTTT
T ss_pred HHHHHHHHHH-HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeeccc-----CcceeEEEecccc
Confidence 5555666655 679999999998874 9999999999999999999832222111 1123467776554
Done!