Query 009726
Match_columns 527
No_of_seqs 307 out of 1576
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 16:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00501 BRIGHT BRIGHT, ARID 99.9 1.4E-25 3E-30 190.7 8.6 90 235-324 2-92 (93)
2 PF01388 ARID: ARID/BRIGHT DNA 99.9 5.6E-24 1.2E-28 179.2 7.8 89 232-320 3-92 (92)
3 KOG2744 DNA-binding proteins B 99.9 4.2E-23 9.2E-28 222.3 10.8 301 225-526 153-508 (512)
4 cd06497 ACD_alphaA-crystallin_ 99.8 8.9E-20 1.9E-24 154.3 10.4 80 442-523 4-86 (86)
5 cd06472 ACD_ScHsp26_like Alpha 99.8 9.1E-20 2E-24 154.1 10.2 83 440-523 1-92 (92)
6 COG0071 IbpA Molecular chapero 99.8 2.7E-19 5.8E-24 163.5 11.6 89 436-526 38-135 (146)
7 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 4.2E-19 9E-24 149.0 10.1 80 442-523 1-83 (83)
8 cd06475 ACD_HspB1_like Alpha c 99.8 5.9E-19 1.3E-23 149.3 10.6 82 441-523 3-86 (86)
9 cd06479 ACD_HspB7_like Alpha c 99.8 3.6E-19 7.9E-24 149.8 9.1 79 442-523 2-81 (81)
10 cd06498 ACD_alphaB-crystallin_ 99.8 6.1E-19 1.3E-23 148.8 10.2 80 443-524 2-84 (84)
11 PRK11597 heat shock chaperone 99.8 9.8E-19 2.1E-23 161.2 11.8 85 436-524 30-122 (142)
12 PRK10743 heat shock protein Ib 99.8 1E-18 2.3E-23 159.9 11.3 84 437-524 33-124 (137)
13 cd06471 ACD_LpsHSP_like Group 99.8 8.6E-19 1.9E-23 147.8 9.9 81 440-523 2-93 (93)
14 cd06476 ACD_HspB2_like Alpha c 99.8 4.4E-18 9.6E-23 143.5 9.8 80 443-523 2-83 (83)
15 cd06470 ACD_IbpA-B_like Alpha- 99.7 2E-17 4.4E-22 140.1 10.6 80 440-523 2-90 (90)
16 PF00011 HSP20: Hsp20/alpha cr 99.7 3.1E-17 6.8E-22 139.3 11.5 83 442-526 1-90 (102)
17 cd06477 ACD_HspB3_Like Alpha c 99.7 2.4E-17 5.1E-22 139.5 9.8 77 444-522 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.7 3.6E-17 7.8E-22 136.1 8.6 75 447-523 6-83 (83)
19 cd06481 ACD_HspB9_like Alpha c 99.7 8E-17 1.7E-21 136.6 8.7 77 445-523 4-87 (87)
20 cd06464 ACD_sHsps-like Alpha-c 99.7 1.5E-16 3.2E-21 129.5 9.7 80 442-523 1-88 (88)
21 cd06482 ACD_HspB10 Alpha cryst 99.7 1.7E-16 3.7E-21 135.5 9.0 76 446-522 6-86 (87)
22 cd06480 ACD_HspB8_like Alpha-c 99.6 6E-15 1.3E-19 127.1 9.0 78 445-523 12-91 (91)
23 KOG2510 SWI-SNF chromatin-remo 99.5 4.5E-14 9.7E-19 150.3 8.3 133 199-338 255-390 (532)
24 KOG3591 Alpha crystallins [Pos 99.4 1.1E-12 2.3E-17 124.9 10.0 85 441-526 65-151 (173)
25 KOG0710 Molecular chaperone (s 99.3 1E-12 2.2E-17 126.7 6.4 90 436-526 82-182 (196)
26 cd00298 ACD_sHsps_p23-like Thi 99.3 7.1E-12 1.5E-16 97.4 9.3 78 444-523 2-80 (80)
27 cd06469 p23_DYX1C1_like p23_li 99.1 5.8E-10 1.3E-14 90.5 8.8 70 444-526 2-71 (78)
28 cd06463 p23_like Proteins cont 98.7 9.5E-08 2.1E-12 76.5 9.6 75 444-526 2-76 (84)
29 PF05455 GvpH: GvpH; InterPro 98.7 1.3E-07 2.9E-12 90.7 10.2 77 437-525 90-169 (177)
30 cd06466 p23_CS_SGT1_like p23_l 98.4 1.6E-06 3.5E-11 71.0 8.0 77 442-526 1-77 (84)
31 PF04969 CS: CS domain; Inter 97.7 0.00082 1.8E-08 53.5 11.1 76 440-523 2-79 (79)
32 PF08190 PIH1: pre-RNA process 97.4 0.00086 1.9E-08 67.9 9.6 67 447-523 260-328 (328)
33 cd06465 p23_hB-ind1_like p23_l 97.3 0.0024 5.1E-08 55.8 10.7 77 440-525 2-78 (108)
34 cd06489 p23_CS_hSgt1_like p23_ 97.1 0.0029 6.3E-08 52.6 8.4 77 442-526 1-77 (84)
35 cd06467 p23_NUDC_like p23_like 96.9 0.0086 1.9E-07 49.3 9.0 74 442-526 2-77 (85)
36 cd06468 p23_CacyBP p23_like do 96.8 0.018 4E-07 48.3 10.4 79 440-526 3-85 (92)
37 cd06488 p23_melusin_like p23_l 96.7 0.016 3.5E-07 49.0 10.0 79 440-526 2-80 (87)
38 cd06493 p23_NUDCD1_like p23_NU 96.5 0.024 5.2E-07 47.6 9.4 73 442-525 2-76 (85)
39 cd06494 p23_NUDCD2_like p23-li 95.5 0.14 3.1E-06 44.5 10.0 77 437-525 4-82 (93)
40 PLN03088 SGT1, suppressor of 94.1 0.22 4.8E-06 52.2 8.8 80 439-526 157-236 (356)
41 cd00237 p23 p23 binds heat sho 93.9 0.9 1.9E-05 40.5 11.0 76 440-525 3-78 (106)
42 KOG1309 Suppressor of G2 allel 92.0 0.45 9.7E-06 46.9 6.7 79 439-525 4-82 (196)
43 cd06490 p23_NCB5OR p23_like do 89.3 4.3 9.4E-05 34.6 9.7 76 442-526 2-80 (87)
44 cd06492 p23_mNUDC_like p23-lik 83.9 9.7 0.00021 32.6 9.0 70 445-525 5-78 (87)
45 PF00249 Myb_DNA-binding: Myb- 79.7 3.3 7.1E-05 31.2 4.1 39 267-316 10-48 (48)
46 cd06495 p23_NUDCD3_like p23-li 71.2 52 0.0011 29.3 10.0 77 441-525 7-86 (102)
47 PF13921 Myb_DNA-bind_6: Myb-l 53.9 23 0.0005 27.5 4.1 37 268-317 8-44 (60)
48 PF09441 Abp2: ARS binding pro 53.4 21 0.00045 34.9 4.5 38 256-297 45-82 (175)
49 cd00167 SANT 'SWI3, ADA2, N-Co 53.1 25 0.00054 24.5 3.9 37 268-316 9-45 (45)
50 KOG2744 DNA-binding proteins B 51.4 3.9 8.4E-05 45.8 -0.8 96 229-324 303-400 (512)
51 COG3343 RpoE DNA-directed RNA 47.2 7.6 0.00016 38.1 0.5 66 237-312 14-82 (175)
52 PF13349 DUF4097: Domain of un 41.3 2E+02 0.0044 25.9 8.9 75 440-520 67-147 (166)
53 KOG1667 Zn2+-binding protein M 34.8 1.4E+02 0.003 31.6 7.2 79 441-526 217-295 (320)
54 smart00717 SANT SANT SWI3, AD 33.7 79 0.0017 22.2 4.0 26 286-316 22-47 (49)
55 TIGR01557 myb_SHAQKYF myb-like 32.2 46 0.00099 26.9 2.7 26 289-318 30-56 (57)
56 PF04972 BON: BON domain; Int 31.5 74 0.0016 24.7 3.8 26 457-483 12-37 (64)
57 COG5091 SGT1 Suppressor of G2 29.9 37 0.00081 36.0 2.4 79 438-523 176-254 (368)
58 cd06471 ACD_LpsHSP_like Group 28.3 77 0.0017 26.6 3.7 30 448-478 62-91 (93)
59 cd06482 ACD_HspB10 Alpha cryst 26.7 83 0.0018 27.3 3.6 31 491-523 9-39 (87)
60 PLN03212 Transcription repress 26.6 69 0.0015 33.2 3.6 42 268-320 35-76 (249)
61 PF09171 DUF1886: Domain of un 26.6 49 0.0011 34.1 2.5 51 285-335 123-173 (246)
62 cd06477 ACD_HspB3_Like Alpha c 25.7 1.3E+02 0.0028 25.8 4.6 31 449-479 51-82 (83)
63 PRK02363 DNA-directed RNA poly 25.5 16 0.00035 34.0 -1.0 65 238-312 4-71 (129)
64 PF14913 DPCD: DPCD protein fa 25.2 3E+02 0.0065 27.7 7.5 70 444-524 92-169 (194)
65 PRK13280 N-glycosylase/DNA lya 24.4 56 0.0012 34.1 2.5 53 283-335 131-183 (269)
66 cd06478 ACD_HspB4-5-6 Alpha-cr 22.7 1.2E+02 0.0026 25.5 3.8 30 491-522 8-37 (83)
67 PRK10568 periplasmic protein; 20.8 4.3E+02 0.0094 26.0 7.7 25 457-482 73-97 (203)
68 KOG3591 Alpha crystallins [Pos 20.6 1.1E+02 0.0023 29.9 3.4 38 457-499 125-162 (173)
69 cd06497 ACD_alphaA-crystallin_ 20.5 1.3E+02 0.0028 25.6 3.6 30 491-522 11-40 (86)
70 cd06472 ACD_ScHsp26_like Alpha 20.2 1.4E+02 0.003 25.2 3.7 31 447-478 59-90 (92)
No 1
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.92 E-value=1.4e-25 Score=190.67 Aligned_cols=90 Identities=32% Similarity=0.609 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHH
Q 009726 235 EQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYE 313 (527)
Q Consensus 235 Er~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~Ye 313 (527)
+++.|+++|.+||+.+|+++ ++|+|+|++||||+||++|+++|||++||.+++|.+||+.||++..++++++.||++|.
T Consensus 2 ~~~~F~~~L~~F~~~~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~ 81 (93)
T smart00501 2 ERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYE 81 (93)
T ss_pred cHHHHHHHHHHHHHHcCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHH
Confidence 67899999999999999998 79999999999999999999999999999999999999999999889999999999999
Q ss_pred HhHHHHHhhhh
Q 009726 314 KALLDYERHKT 324 (527)
Q Consensus 314 KyLlpYE~~~~ 324 (527)
+||++||++..
T Consensus 82 k~L~~yE~~~~ 92 (93)
T smart00501 82 RYLLPFERFLR 92 (93)
T ss_pred HHhHHHHHHhh
Confidence 99999999865
No 2
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.90 E-value=5.6e-24 Score=179.24 Aligned_cols=89 Identities=35% Similarity=0.666 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHH
Q 009726 232 TEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRG 310 (527)
Q Consensus 232 ~~eEr~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~ 310 (527)
..++++.|++.|.+||+.+|+++ ++|.++|++||||+||++|+++|||++||.+++|.+||+.||++..+++.+..||+
T Consensus 3 ~~~~~~~F~~~L~~f~~~~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~ 82 (92)
T PF01388_consen 3 NTREREQFLEQLREFHESRGTPIDRPPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQ 82 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSSSS-SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHH
Confidence 45788999999999999999997 79999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHhHHHHH
Q 009726 311 FYEKALLDYE 320 (527)
Q Consensus 311 ~YeKyLlpYE 320 (527)
+|++||++||
T Consensus 83 ~Y~~~L~~fE 92 (92)
T PF01388_consen 83 HYEKYLLPFE 92 (92)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHhHhhC
Confidence 9999999998
No 3
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.88 E-value=4.2e-23 Score=222.28 Aligned_cols=301 Identities=23% Similarity=0.238 Sum_probs=210.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCCCCC-CCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCC-CCC
Q 009726 225 DEGSESGTEEEQSSFMEELENFFRDRSMEFK-PPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPK-TCT 302 (527)
Q Consensus 225 ~~~de~g~~eEr~~Fl~~L~~F~e~RGtp~k-~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~-t~t 302 (527)
...++++.+..++.||+.|+.||+.+|++|+ +|+|+|++||||+||..|+++||+++|+.+|+|++|...|++|. ++|
T Consensus 153 ~~~~~e~~~~~~eeF~~dl~~f~~~~~~~~~~iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~~l~~pt~tiT 232 (512)
T KOG2744|consen 153 PLYETEGVPKSSEEFMEDLRRFMKKRGTKVKSIPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVIDGLNFPTPTIT 232 (512)
T ss_pred cccccccccccHHHHHHHHHHHHHHhCCcceeccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhccccCCCcccc
Confidence 4666778888999999999999999999996 99999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHhHHHHHhhhhcC--CCCCCCc-------ccCCCCCccccCCCCC-cch---------hhHHHHHhhcC
Q 009726 303 TVSWTFRGFYEKALLDYERHKTSG--GELSLPV-------ASQSQPMNIDNQASGS-GRA---------RRDAAARAMQG 363 (527)
Q Consensus 303 Sas~~LK~~YeKyLlpYE~~~~~~--ge~~~Pi-------~s~~~~~~ie~q~~~s-GR~---------Rr~aaara~qG 363 (527)
++++.||++|+|+|+.|||.+... +.++.|. ++...+... ....++ ++. +..+++..|.|
T Consensus 233 saaf~lr~~y~K~L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~~~g 311 (512)
T KOG2744|consen 233 SAAFTLRKQYLKLLFEYECEFEKNRHVPLNSPAELSEEASSSNRREGRR-HELSPSKEFQANGPSEEEPAEAEAAPEILG 311 (512)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccccccccccccccc-cccCcchhhccCCcccccccccccchhhhc
Confidence 999999999999999999999854 4444443 222232211 111122 332 34788999999
Q ss_pred CCcccccCCCCCCCCcccCCCCcchHH----HHhh----hhcccccccCCC---------------chHHHHHHHhhcc-
Q 009726 364 WHSQHVLGSDEISDPIIKDKNHLSLQK----CEKQ----LKSRGLIKRKKP---------------SYMELAVKAARTK- 419 (527)
Q Consensus 364 ~Hs~r~~g~g~v~~P~ikdk~~~~~~~----r~k~----lks~Gl~k~k~~---------------~~~e~~~~~~~~~- 419 (527)
++.++++..+.+..+.|++......+. +... .-..+...+... .......+.....
T Consensus 312 ~f~~~~~~~~~~~s~~ln~~~~~~~~~~~~~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~ 391 (512)
T KOG2744|consen 312 NFLQGLLVFMKDGSEPLNGVLYLGPPDLNLFKVFRLECHQGGDSNIPSALQWKQVAKDLGLLPNLNSAASSNTKLAYKKS 391 (512)
T ss_pred cccccCceeccCcchhccCccccccCcccccccccceeeccCcCcCCchhheeccccccccccccccccccccccccchh
Confidence 999999999998888887543221111 0000 000000000000 0000000000000
Q ss_pred ---cCcc----ccccccccCCCCCCCeeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCC---CCCce
Q 009726 420 ---TSKS----QLDVAVVDLGPPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPD---NPWGV 489 (527)
Q Consensus 420 ---~~~~----~~d~~v~d~gPpa~wv~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e---~~~~~ 489 (527)
...+ ..-....+..|...|+..+..+..+++...+..++..+..|.|+++.++...+-+...+.. ..+..
T Consensus 392 l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~e~~~~~~al~lt~~~~~~~~~~~~e~ng~~~~gvl~~q~~~~~~~~~~ 471 (512)
T KOG2744|consen 392 LSENEEYCSINSVNIEFPEALPKEIKVNKQLRELENLLEALALTPSNAKTEIKVQCEENGTGYSGVLFAQIELPLPSPIS 471 (512)
T ss_pred hccccccchhhhccccccccccchhhhccchHHHHHhHHHhccCccccccceeeecccccccccceeeecccccccCCCc
Confidence 0000 0012233445555666666778888887778889999999999999776666666555442 23556
Q ss_pred eeEEEEEeCCCCcccCCceEEeccCcEEEEEeeccCC
Q 009726 490 TPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPFEQT 526 (527)
Q Consensus 490 ~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLPK~~~ 526 (527)
..+++...-...++...+.+...+.|-..+..|+++.
T Consensus 472 ~p~~~~~s~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 508 (512)
T KOG2744|consen 472 APPSHVNSTSGSSNPENISASHSPLSETYLATPFAHT 508 (512)
T ss_pred CccccccCCCCCCCccccccccCCCccccccCCCccc
Confidence 6889999999999999999999888888888888753
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.81 E-value=8.9e-20 Score=154.29 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=72.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC--CCceeeEEEEEeCCCCcccCCceEEe-ccCcEEE
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN--PWGVTPFKKVVSLPARIDPHLTSAVV-TLHGQLF 518 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~--~~~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL~ 518 (527)
+|++++++|.|.++||||+++||+|++. ++.|+|+|++..... .+....|+|+|.||..||.++|+|+| + ||||+
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~-dGvL~ 81 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVL-DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSA-DGMLT 81 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CCEEE
Confidence 7999999999999999999999999999 999999999765432 23345999999999999999999999 7 99999
Q ss_pred EEeec
Q 009726 519 VRVPF 523 (527)
Q Consensus 519 ItLPK 523 (527)
|++||
T Consensus 82 I~~PK 86 (86)
T cd06497 82 FSGPK 86 (86)
T ss_pred EEecC
Confidence 99998
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.81 E-value=9.1e-20 Score=154.14 Aligned_cols=83 Identities=28% Similarity=0.397 Sum_probs=72.9
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCC--CCC-------ceeeEEEEEeCCCCcccCCceEE
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPD--NPW-------GVTPFKKVVSLPARIDPHLTSAV 510 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e--~~~-------~~~~F~R~~~LP~~VD~d~IsAs 510 (527)
++||+|++++|+|.++||||+++||+|++++++.|+|+|++.... ... .+.+|.|+|.||..||.+.|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 389999999999999999999999999999345899999986542 111 23499999999999999999999
Q ss_pred eccCcEEEEEeec
Q 009726 511 VTLHGQLFVRVPF 523 (527)
Q Consensus 511 y~~nGVL~ItLPK 523 (527)
|+ ||||+|+|||
T Consensus 81 ~~-nGvL~I~lPK 92 (92)
T cd06472 81 LE-NGVLTVTVPK 92 (92)
T ss_pred EE-CCEEEEEecC
Confidence 99 9999999998
No 6
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.7e-19 Score=163.49 Aligned_cols=89 Identities=24% Similarity=0.501 Sum_probs=79.0
Q ss_pred CCCeeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCC--C--CC-----ceeeEEEEEeCCCCcccCC
Q 009726 436 ADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPD--N--PW-----GVTPFKKVVSLPARIDPHL 506 (527)
Q Consensus 436 a~wv~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e--~--~~-----~~~~F~R~~~LP~~VD~d~ 506 (527)
..|+++||+|+++.|+|.++||||+++||+|+++ ++.|+|+|++.... . .+ .+..|+|+|.||..||++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~-~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVE-GNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEE-CCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 4577899999999999999999999999999999 99999999997631 1 12 1349999999999999999
Q ss_pred ceEEeccCcEEEEEeeccCC
Q 009726 507 TSAVVTLHGQLFVRVPFEQT 526 (527)
Q Consensus 507 IsAsy~~nGVL~ItLPK~~~ 526 (527)
|+|+|+ ||||+|+|||..+
T Consensus 117 ~~A~~~-nGvL~I~lpk~~~ 135 (146)
T COG0071 117 IKAKYK-NGLLTVTLPKAEP 135 (146)
T ss_pred eeeEee-CcEEEEEEecccc
Confidence 999999 9999999999764
No 7
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.79 E-value=4.2e-19 Score=149.01 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=71.5
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC--CCceeeEEEEEeCCCCcccCCceEEe-ccCcEEE
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN--PWGVTPFKKVVSLPARIDPHLTSAVV-TLHGQLF 518 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~--~~~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL~ 518 (527)
.|.++++.|+|.++||||+++||+|++. ++.|+|+|++..... .+....|.|+|.||.+||.++|+|+| . ||||+
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~-dGvL~ 78 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVL-GDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSA-DGVLT 78 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECC-CCEEE
Confidence 3788999999999999999999999999 899999999865432 23345999999999999999999999 7 99999
Q ss_pred EEeec
Q 009726 519 VRVPF 523 (527)
Q Consensus 519 ItLPK 523 (527)
|++||
T Consensus 79 I~~PK 83 (83)
T cd06478 79 ISGPR 83 (83)
T ss_pred EEecC
Confidence 99998
No 8
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.79 E-value=5.9e-19 Score=149.27 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=73.5
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCc--eeeEEEEEeCCCCcccCCceEEeccCcEEE
Q 009726 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWG--VTPFKKVVSLPARIDPHLTSAVVTLHGQLF 518 (527)
Q Consensus 441 vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~--~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ 518 (527)
.||+|+++.|.|.++||||+|+||+|+++ ++.|+|+|++.......+ ..+|+|+|.||..||.++|+|.|+.||||+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTK-DGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEE-CCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 58999999999999999999999999999 899999999876533333 359999999999999999999994499999
Q ss_pred EEeec
Q 009726 519 VRVPF 523 (527)
Q Consensus 519 ItLPK 523 (527)
|++|.
T Consensus 82 I~lP~ 86 (86)
T cd06475 82 VEAPI 86 (86)
T ss_pred EEecC
Confidence 99993
No 9
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.79 E-value=3.6e-19 Score=149.78 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=72.8
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEe-ccCcEEEEE
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVV-TLHGQLFVR 520 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL~It 520 (527)
||+|+++.|+|.++||||+||||+|+++ +|.|+|+|+++... +..+.+|.|+|.||.+||+++|+|+| + ||||+|+
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~-~~~L~I~ger~~~~-~~~~g~F~R~~~LP~~vd~e~v~A~l~~-~GvL~I~ 78 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTS-NNQIEVHAEKLASD-GTVMNTFTHKCQLPEDVDPTSVSSSLGE-DGTLTIK 78 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEeccC-CCEEEEEEEEEECCCCcCHHHeEEEecC-CCEEEEE
Confidence 7999999999999999999999999999 99999999987543 33456999999999999999999997 8 9999999
Q ss_pred eec
Q 009726 521 VPF 523 (527)
Q Consensus 521 LPK 523 (527)
+++
T Consensus 79 ~~~ 81 (81)
T cd06479 79 ARR 81 (81)
T ss_pred ecC
Confidence 985
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=6.1e-19 Score=148.77 Aligned_cols=80 Identities=25% Similarity=0.332 Sum_probs=71.8
Q ss_pred EEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC--CCceeeEEEEEeCCCCcccCCceEEe-ccCcEEEE
Q 009726 443 VQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN--PWGVTPFKKVVSLPARIDPHLTSAVV-TLHGQLFV 519 (527)
Q Consensus 443 V~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~--~~~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL~I 519 (527)
+.+++++|+|.++||||+|+||+|++. ++.|+|+|++..... .+.+..|+|+|.||.+||.++|+|+| . ||||+|
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~-dGvL~I 79 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVL-GDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSP-DGVLTV 79 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCC-CCEEEE
Confidence 678899999999999999999999999 999999999865432 33445999999999999999999999 6 999999
Q ss_pred Eeecc
Q 009726 520 RVPFE 524 (527)
Q Consensus 520 tLPK~ 524 (527)
++||.
T Consensus 80 ~lPk~ 84 (84)
T cd06498 80 CGPRK 84 (84)
T ss_pred EEeCC
Confidence 99984
No 11
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.78 E-value=9.8e-19 Score=161.21 Aligned_cols=85 Identities=19% Similarity=0.441 Sum_probs=73.8
Q ss_pred CCCeeeeEEEe-CCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCc-------eeeEEEEEeCCCCcccCCc
Q 009726 436 ADWVKINVQRT-KDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWG-------VTPFKKVVSLPARIDPHLT 507 (527)
Q Consensus 436 a~wv~vDV~Et-~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~-------~~~F~R~~~LP~~VD~d~I 507 (527)
..++++||+|+ +++|+|.++||||+++||+|+|+ +|.|+|+|+++..+.+.. +..|+|+|.||..||.+
T Consensus 30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~-- 106 (142)
T PRK11597 30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS-- 106 (142)
T ss_pred CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--
Confidence 45667999985 78999999999999999999999 999999999865432222 23999999999999998
Q ss_pred eEEeccCcEEEEEeecc
Q 009726 508 SAVVTLHGQLFVRVPFE 524 (527)
Q Consensus 508 sAsy~~nGVL~ItLPK~ 524 (527)
+|+|+ ||||+|+|||.
T Consensus 107 ~A~~~-nGVL~I~lPK~ 122 (142)
T PRK11597 107 GATFV-NGLLHIDLIRN 122 (142)
T ss_pred cCEEc-CCEEEEEEecc
Confidence 79999 99999999995
No 12
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.78 E-value=1e-18 Score=159.89 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=73.5
Q ss_pred CCeeeeEEE-eCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCC--Cc-----eeeEEEEEeCCCCcccCCce
Q 009726 437 DWVKINVQR-TKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNP--WG-----VTPFKKVVSLPARIDPHLTS 508 (527)
Q Consensus 437 ~wv~vDV~E-t~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~--~~-----~~~F~R~~~LP~~VD~d~Is 508 (527)
.|+++||++ ++++|+|.|+||||+++||+|+++ +|.|+|+|+++....+ +. +.+|+|+|.||..||.+ +
T Consensus 33 ~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~-~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 33 GYPPYNVELVDENHYRIAIAVAGFAESELEITAQ-DNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 456799995 899999999999999999999999 9999999998765322 21 23999999999999999 4
Q ss_pred EEeccCcEEEEEeecc
Q 009726 509 AVVTLHGQLFVRVPFE 524 (527)
Q Consensus 509 Asy~~nGVL~ItLPK~ 524 (527)
|+|+ ||||+|+|||.
T Consensus 110 A~~~-dGVL~I~lPK~ 124 (137)
T PRK10743 110 ANLV-NGLLYIDLERV 124 (137)
T ss_pred CEEe-CCEEEEEEeCC
Confidence 9999 99999999995
No 13
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.78 E-value=8.6e-19 Score=147.81 Aligned_cols=81 Identities=25% Similarity=0.437 Sum_probs=72.5
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC------CC-----ceeeEEEEEeCCCCcccCCce
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN------PW-----GVTPFKKVVSLPARIDPHLTS 508 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~------~~-----~~~~F~R~~~LP~~VD~d~Is 508 (527)
++||+|++++|+|.++||||+++||+|+++ ++.|+|+|++..... .+ .+..|+|+|.|| +||.+.|+
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYK-DGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 599999999999999999999999999999 999999999975411 11 223899999999 79999999
Q ss_pred EEeccCcEEEEEeec
Q 009726 509 AVVTLHGQLFVRVPF 523 (527)
Q Consensus 509 Asy~~nGVL~ItLPK 523 (527)
|+|+ ||||+|+|||
T Consensus 80 A~~~-dGvL~I~lPK 93 (93)
T cd06471 80 AKYE-NGVLKITLPK 93 (93)
T ss_pred EEEE-CCEEEEEEcC
Confidence 9999 9999999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.75 E-value=4.4e-18 Score=143.49 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=70.3
Q ss_pred EEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC--CCceeeEEEEEeCCCCcccCCceEEeccCcEEEEE
Q 009726 443 VQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN--PWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVR 520 (527)
Q Consensus 443 V~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~--~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~It 520 (527)
|.-+++.|+|.++||||+++||+|++. ++.|+|+|++..... ++....|+|+|.||..||+++|+|+|..||||+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~-~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTV-DNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 345689999999999999999999999 999999999865432 34455999999999999999999999339999999
Q ss_pred eec
Q 009726 521 VPF 523 (527)
Q Consensus 521 LPK 523 (527)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 15
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.73 E-value=2e-17 Score=140.08 Aligned_cols=80 Identities=15% Similarity=0.380 Sum_probs=70.5
Q ss_pred eeeEEEeC-CEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC-CC-------ceeeEEEEEeCCCCcccCCceEE
Q 009726 440 KINVQRTK-DCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN-PW-------GVTPFKKVVSLPARIDPHLTSAV 510 (527)
Q Consensus 440 ~vDV~Et~-D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~-~~-------~~~~F~R~~~LP~~VD~d~IsAs 510 (527)
++||+|++ +.|+|.++||||+++||+|+++ ++.|+|+|++..... .. .+..|+|+|.||.+||.+ +|+
T Consensus 2 ~~di~e~~~~~~~v~~~lPG~~kedi~v~~~-~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~ 78 (90)
T cd06470 2 PYNIEKTGENNYRITLAVAGFSEDDLEIEVE-NNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAE 78 (90)
T ss_pred CeeeEEcCCCeEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeE
Confidence 48999985 9999999999999999999999 999999999987642 11 134999999999999874 999
Q ss_pred eccCcEEEEEeec
Q 009726 511 VTLHGQLFVRVPF 523 (527)
Q Consensus 511 y~~nGVL~ItLPK 523 (527)
|+ ||||+|+||+
T Consensus 79 ~~-~GvL~I~l~~ 90 (90)
T cd06470 79 LE-NGLLTIDLER 90 (90)
T ss_pred Ee-CCEEEEEEEC
Confidence 99 9999999985
No 16
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.73 E-value=3.1e-17 Score=139.30 Aligned_cols=83 Identities=24% Similarity=0.551 Sum_probs=68.9
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCC--CCCC-----ceeeEEEEEeCCCCcccCCceEEeccC
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHP--DNPW-----GVTPFKKVVSLPARIDPHLTSAVVTLH 514 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~--e~~~-----~~~~F~R~~~LP~~VD~d~IsAsy~~n 514 (527)
||++++++|.|.++||||.++||+|+++ ++.|+|+|++... ...+ ....|.|+|.||..+|.++|+|.|+ |
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~-~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~-~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVD-DNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE-N 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEE-TTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET-T
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEe-cCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec-C
Confidence 7999999999999999999999999999 9999999999822 2222 2349999999999999999999999 9
Q ss_pred cEEEEEeeccCC
Q 009726 515 GQLFVRVPFEQT 526 (527)
Q Consensus 515 GVL~ItLPK~~~ 526 (527)
|+|+|++||...
T Consensus 79 GvL~I~~pk~~~ 90 (102)
T PF00011_consen 79 GVLTITIPKKEE 90 (102)
T ss_dssp SEEEEEEEBSSS
T ss_pred CEEEEEEEcccc
Confidence 999999999753
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.72 E-value=2.4e-17 Score=139.50 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=68.7
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCC--CCCceeeEEEEEeCCCCcccCCceEEe-ccCcEEEEE
Q 009726 444 QRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPD--NPWGVTPFKKVVSLPARIDPHLTSAVV-TLHGQLFVR 520 (527)
Q Consensus 444 ~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e--~~~~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL~It 520 (527)
-|+++.|+|.++||||+||||+|++. ++.|+|+|++.... ..+...+|.|+|.||.+||.+.|+|+| + ||||+|+
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~-~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~-dGvL~I~ 80 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVF-EGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCH-DGILVVE 80 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEE-CCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcC-CCEEEEE
Confidence 36789999999999999999999999 99999999987653 233335999999999999999999998 8 9999999
Q ss_pred ee
Q 009726 521 VP 522 (527)
Q Consensus 521 LP 522 (527)
.|
T Consensus 81 ~~ 82 (83)
T cd06477 81 TK 82 (83)
T ss_pred ec
Confidence 76
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.70 E-value=3.6e-17 Score=136.12 Aligned_cols=75 Identities=25% Similarity=0.473 Sum_probs=68.3
Q ss_pred CCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC--CCceeeEEEEEeCCCCcccCCceEEeccC-cEEEEEeec
Q 009726 447 KDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN--PWGVTPFKKVVSLPARIDPHLTSAVVTLH-GQLFVRVPF 523 (527)
Q Consensus 447 ~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~--~~~~~~F~R~~~LP~~VD~d~IsAsy~~n-GVL~ItLPK 523 (527)
.+.|.|.++||||+++||+|+++ ++.|+|+|++..... .+.+..|+|+|.||..||.++|+|+|. | |||+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~-~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL~I~~Pk 83 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVS-DNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVLTIEAPK 83 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEE-CCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEEEEEecC
Confidence 36999999999999999999999 899999999987642 344569999999999999999999999 8 999999997
No 19
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.69 E-value=8e-17 Score=136.58 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=67.8
Q ss_pred EeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC----CC--ceeeEEEEEeCCCCcccCCceEEe-ccCcEE
Q 009726 445 RTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN----PW--GVTPFKKVVSLPARIDPHLTSAVV-TLHGQL 517 (527)
Q Consensus 445 Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~----~~--~~~~F~R~~~LP~~VD~d~IsAsy-~~nGVL 517 (527)
+..+.|+|.++||||.++||+|+++ ++.|+|+|++..... .+ .+..|+|+|.||..||.+.|+|.| + ||||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~-~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~-dGvL 81 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVD-GRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSP-SGHL 81 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEE-CCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCC-CceE
Confidence 4568999999999999999999999 999999999865421 11 124999999999999999999999 8 9999
Q ss_pred EEEeec
Q 009726 518 FVRVPF 523 (527)
Q Consensus 518 ~ItLPK 523 (527)
+|++|+
T Consensus 82 ~I~~P~ 87 (87)
T cd06481 82 HIRAPR 87 (87)
T ss_pred EEEcCC
Confidence 999995
No 20
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.68 E-value=1.5e-16 Score=129.46 Aligned_cols=80 Identities=31% Similarity=0.555 Sum_probs=72.5
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCC--------CceeeEEEEEeCCCCcccCCceEEecc
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNP--------WGVTPFKKVVSLPARIDPHLTSAVVTL 513 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~--------~~~~~F~R~~~LP~~VD~d~IsAsy~~ 513 (527)
|++|+++.|+|.++||||++++|+|++. ++.|+|+|++...... .....|.|+|.||..+|.+.++|.|.
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~-~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~- 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE- 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe-
Confidence 5789999999999999999999999999 8999999999866322 12349999999999999999999999
Q ss_pred CcEEEEEeec
Q 009726 514 HGQLFVRVPF 523 (527)
Q Consensus 514 nGVL~ItLPK 523 (527)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 21
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.67 E-value=1.7e-16 Score=135.46 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=66.8
Q ss_pred eCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC-----CCceeeEEEEEeCCCCcccCCceEEeccCcEEEEE
Q 009726 446 TKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN-----PWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVR 520 (527)
Q Consensus 446 t~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~-----~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~It 520 (527)
.++.|+|.++||||+++||+|+|+ +|.|+|+|+++.... ...+.+|.|+|.||.+||.++|+|+|+.+|||+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~-~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVK-DGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 578999999999999999999999 999999999976432 13345999999999999999999999945599998
Q ss_pred ee
Q 009726 521 VP 522 (527)
Q Consensus 521 LP 522 (527)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 87
No 22
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.58 E-value=6e-15 Score=127.12 Aligned_cols=78 Identities=26% Similarity=0.426 Sum_probs=70.2
Q ss_pred EeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCc--eeeEEEEEeCCCCcccCCceEEeccCcEEEEEee
Q 009726 445 RTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWG--VTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522 (527)
Q Consensus 445 Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~--~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLP 522 (527)
.+++.|.|.+++.||++|||+|++. +++|+|+|+++..+.+.+ ..+|.|+|.||..||.+.|+|.|..||+|+|++|
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~-~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTK-DGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEE-CCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 5678999999999999999999999 999999999987643333 3499999999999999999999988999999998
Q ss_pred c
Q 009726 523 F 523 (527)
Q Consensus 523 K 523 (527)
-
T Consensus 91 ~ 91 (91)
T cd06480 91 Q 91 (91)
T ss_pred C
Confidence 3
No 23
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=99.49 E-value=4.5e-14 Score=150.27 Aligned_cols=133 Identities=18% Similarity=0.263 Sum_probs=110.2
Q ss_pred cCCCCCCCCCCCcccCC--CCceeecCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCCC-CCCeeCCeeechhhHHHHHhh
Q 009726 199 VNKSELPTLPMNEKSNS--AQLFLLDGNDEGSESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTR 275 (527)
Q Consensus 199 ~~~~e~~~~~~~~~~~~--~~sf~~~~~~~~de~g~~eEr~~Fl~~L~~F~e~RGtp~-k~P~IgGK~LDLykLYkaV~~ 275 (527)
++....+..+..+..++ +.+.+-+.-...++.+...+|+.++++|+.|++++.+++ .+|.++.++||||+||..|+.
T Consensus 255 ~~~~~~~apiP~s~srss~ssttt~~~iTklYelg~qp~r~~wvDR~raF~ee~~Sp~t~~p~~gakPldl~rlYvsvke 334 (532)
T KOG2510|consen 255 MNNKADGAPIPESPSRSSSSSTTTNEKITKLYELGGQPERKEWVDRLRAFTEERASPMTNLPAVGAKPLDLYRLYVSVKE 334 (532)
T ss_pred cchhhccCCCCCCcccccccceecccccccccccccCcchhhHHHHHHHHHHhhcCcccccccccccchhHHHHHHHHHH
Confidence 34444454444444444 444444444899999999999999999999999999999 589999999999999999999
Q ss_pred cCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHHhhhhcCCCCCCCcccCCC
Q 009726 276 LGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338 (527)
Q Consensus 276 ~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyLlpYE~~~~~~ge~~~Pi~s~~~ 338 (527)
+||+..|+++| +++|-.|| .++++.||++|.+||+.|||++.++++.++-+-+..+
T Consensus 335 ~gg~~~v~knk--rd~a~~lg-----ssaa~~l~k~y~~~lf~fec~f~Rg~e~p~~~~s~~~ 390 (532)
T KOG2510|consen 335 IGGLTQVNKNK--RDLATNLG-----SSAASSLKKQYIQYLFAFECKFERGEEPPPDIFSAGD 390 (532)
T ss_pred hccceeeccch--hhhhhccc-----hHHHHHHHHHHHHHHHhhceeeeccCCCCHHHhhccc
Confidence 99999999998 99998887 5789999999999999999999999988766544433
No 24
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-12 Score=124.85 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=78.9
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCcee--eEEEEEeCCCCcccCCceEEeccCcEEE
Q 009726 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT--PFKKVVSLPARIDPHLTSAVVTLHGQLF 518 (527)
Q Consensus 441 vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~--~F~R~~~LP~~VD~d~IsAsy~~nGVL~ 518 (527)
.+|..+++.|.|.+||..|.||+|.|++. ++.|.|.|++...+.+.++. .|.|+|.||.+||++.|++.+..+|+|+
T Consensus 65 ~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~-~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLt 143 (173)
T KOG3591|consen 65 SEIVNDKDKFEVNLDVHQFKPEELKVKTD-DNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLT 143 (173)
T ss_pred cccccCCCcEEEEEEcccCcccceEEEeC-CCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEE
Confidence 77888999999999999999999999999 99999999999887666654 9999999999999999999999999999
Q ss_pred EEeeccCC
Q 009726 519 VRVPFEQT 526 (527)
Q Consensus 519 ItLPK~~~ 526 (527)
|+.||.+.
T Consensus 144 I~ap~~~~ 151 (173)
T KOG3591|consen 144 IEAPKPPP 151 (173)
T ss_pred EEccCCCC
Confidence 99999753
No 25
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-12 Score=126.72 Aligned_cols=90 Identities=29% Similarity=0.473 Sum_probs=78.4
Q ss_pred CCCeeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCC------C-----ceeeEEEEEeCCCCccc
Q 009726 436 ADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNP------W-----GVTPFKKVVSLPARIDP 504 (527)
Q Consensus 436 a~wv~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~------~-----~~~~F~R~~~LP~~VD~ 504 (527)
..++.+||.|+.++|++.++|||+.+++|+|+++++++|+|+|++..+... | ....|.|+|.||+.++.
T Consensus 82 ~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~ 161 (196)
T KOG0710|consen 82 EARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDV 161 (196)
T ss_pred cccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccH
Confidence 345668899999999999999999999999999955589999999876321 2 22399999999999999
Q ss_pred CCceEEeccCcEEEEEeeccCC
Q 009726 505 HLTSAVVTLHGQLFVRVPFEQT 526 (527)
Q Consensus 505 d~IsAsy~~nGVL~ItLPK~~~ 526 (527)
+.|+|.|. ||||+|+|||..+
T Consensus 162 d~ikA~~~-nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 162 DEIKAEME-NGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHHhh-CCeEEEEEecccc
Confidence 99999999 9999999999754
No 26
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.34 E-value=7.1e-12 Score=97.42 Aligned_cols=78 Identities=27% Similarity=0.474 Sum_probs=70.1
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCC-CCceeeEEEEEeCCCCcccCCceEEeccCcEEEEEee
Q 009726 444 QRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDN-PWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522 (527)
Q Consensus 444 ~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~-~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLP 522 (527)
+++++.|.|++++||+.+++|+|.+. ++.|+|+|.+..... ......|.+.+.||..||++.++|.|. +|+|+|++|
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~l~i~l~ 79 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVE-DNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLE-NGVLEITLP 79 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEE-CCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEE-CCEEEEEEc
Confidence 57889999999999999999999999 899999999875432 223459999999999999999999999 999999999
Q ss_pred c
Q 009726 523 F 523 (527)
Q Consensus 523 K 523 (527)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 7
No 27
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.08 E-value=5.8e-10 Score=90.50 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=65.2
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEEEeec
Q 009726 444 QRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPF 523 (527)
Q Consensus 444 ~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLPK 523 (527)
+++++.+.|.+++||+.+++|+|+++ ++.|.|+| ..|.+.+.||..||++.++|++. +|.|+|+|||
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~-~~~l~i~~-----------~~~~~~~~l~~~I~~e~~~~~~~-~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCS-DLYLKVNF-----------PPYLFELDLAAPIDDEKSSAKIG-NGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEe-cCEEEEcC-----------CCEEEEEeCcccccccccEEEEe-CCEEEEEEEe
Confidence 57899999999999999999999999 88999988 25999999999999999999999 9999999999
Q ss_pred cCC
Q 009726 524 EQT 526 (527)
Q Consensus 524 ~~~ 526 (527)
.++
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 864
No 28
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.72 E-value=9.5e-08 Score=76.49 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=67.5
Q ss_pred EEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEEEeec
Q 009726 444 QRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPF 523 (527)
Q Consensus 444 ~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLPK 523 (527)
+++++.+.|.+.+||+.+++++|.+. ++.|+|++... +...|...+.|+..||++..++++. +|.|+|+|+|
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~-~~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~l~i~L~K 73 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFT-PKSLTVSVKGG------GGKEYLLEGELFGPIDPEESKWTVE-DRKIEITLKK 73 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEe-cCEEEEEeeCC------CCCceEEeeEccCccchhhcEEEEe-CCEEEEEEEE
Confidence 46789999999999999999999999 89999998753 2247889999999999999999999 9999999999
Q ss_pred cCC
Q 009726 524 EQT 526 (527)
Q Consensus 524 ~~~ 526 (527)
..+
T Consensus 74 ~~~ 76 (84)
T cd06463 74 KEP 76 (84)
T ss_pred CCC
Confidence 864
No 29
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.66 E-value=1.3e-07 Score=90.71 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=63.2
Q ss_pred CCeeeeEEEeCC-EEEEEEEcCCCCCCC-eEEEEe-cCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEecc
Q 009726 437 DWVKINVQRTKD-CFEVYALVPGLLREE-VRVQSD-PAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTL 513 (527)
Q Consensus 437 ~wv~vDV~Et~D-~yvV~adLPGv~kED-I~VqVd-~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~ 513 (527)
.-+.+++.+++| .++|.|+||||++++ |+|.++ ..+.|+|+... .|.+++.||.. +.+.++|+|.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~----------~~~krv~L~~~-~~e~~~~t~n- 157 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE----------KYLKRVALPWP-DPEITSATFN- 157 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC----------ceEeeEecCCC-ccceeeEEEe-
Confidence 345699999888 699999999999998 999998 34566664321 47799999977 7899999999
Q ss_pred CcEEEEEeeccC
Q 009726 514 HGQLFVRVPFEQ 525 (527)
Q Consensus 514 nGVL~ItLPK~~ 525 (527)
||||+|+|-+..
T Consensus 158 NgILEIri~~~~ 169 (177)
T PF05455_consen 158 NGILEIRIRRTE 169 (177)
T ss_pred CceEEEEEeecC
Confidence 999999997753
No 30
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.37 E-value=1.6e-06 Score=70.99 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=68.2
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEEEe
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRV 521 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItL 521 (527)
|.+++++.+.|.+.+||+.++++.|.+. .+.|.|++... +...|...+.|...|+++..++.+. +|.|+|+|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~-~~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~vei~L 72 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFN-EQSLSVSIILP------GGSEYQLELDLFGPIDPEQSKVSVL-PTKVEITL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-cCEEEEEEECC------CCCeEEEecccccccCchhcEEEEe-CeEEEEEE
Confidence 4578999999999999999999999999 88999987742 2236888999999999999999999 99999999
Q ss_pred eccCC
Q 009726 522 PFEQT 526 (527)
Q Consensus 522 PK~~~ 526 (527)
.|..+
T Consensus 73 ~K~~~ 77 (84)
T cd06466 73 KKAEP 77 (84)
T ss_pred EcCCC
Confidence 99864
No 31
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.67 E-value=0.00082 Score=53.50 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=64.3
Q ss_pred eeeEEEeCCEEEEEEEcCCCC--CCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEE
Q 009726 440 KINVQRTKDCFEVYALVPGLL--REEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQL 517 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~--kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL 517 (527)
+++.+++++.+.|++.+++.. ++||+|.+. ++.|.|+..... + ..|.-.+.|...|+++..+..+. ++.|
T Consensus 2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~-~~~l~v~~~~~~-----~-~~~~~~~~L~~~I~~~~s~~~~~-~~~i 73 (79)
T PF04969_consen 2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFT-DTSLSVSIKSGD-----G-KEYLLEGELFGEIDPDESTWKVK-DNKI 73 (79)
T ss_dssp SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEE-TTEEEEEEEETT-----S-CEEEEEEEBSS-BECCCEEEEEE-TTEE
T ss_pred CeEEEECCCEEEEEEEEcCCCCChHHeEEEEE-eeEEEEEEEccC-----C-ceEEEEEEEeeeEcchhcEEEEE-CCEE
Confidence 478899999999999996664 999999999 899999966422 1 47888889999999999999999 9999
Q ss_pred EEEeec
Q 009726 518 FVRVPF 523 (527)
Q Consensus 518 ~ItLPK 523 (527)
.|+|.|
T Consensus 74 ~i~L~K 79 (79)
T PF04969_consen 74 EITLKK 79 (79)
T ss_dssp EEEEEB
T ss_pred EEEEEC
Confidence 999987
No 32
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.38 E-value=0.00086 Score=67.92 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=58.9
Q ss_pred CCEEEEEEEcCCC-CCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEec-cCcEEEEEeec
Q 009726 447 KDCFEVYALVPGL-LREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVT-LHGQLFVRVPF 523 (527)
Q Consensus 447 ~D~yvV~adLPGv-~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~-~nGVL~ItLPK 523 (527)
.+.++|.++|||+ +..+|+|.|. +..|.|..... .|+-.+.||..||.+..+|.|. ..++|+|+||-
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~-~~~l~l~~~~~---------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlpV 328 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVS-EDRLSLSSPKP---------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLPV 328 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEe-CCEEEEEeCCC---------ceEEEccCCCcccCCCceEEEccCCCEEEEEEEC
Confidence 5899999999999 8999999999 88999976632 5778899999999999999994 25899999983
No 33
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.35 E-value=0.0024 Score=55.78 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=67.3
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEE
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFV 519 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~I 519 (527)
+++.+.|.+.+.|.+.+||+ +++.|.+. .+.|.|++.... +...|.-.+.|...|+++..+.++. ++.|.|
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~-~~~l~v~~~~~~-----~~~~y~~~~~L~~~I~pe~s~~~v~-~~kveI 72 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPDA--KDPKIKLE-PTSLSFKAKGGG-----GGKKYEFDLEFYKEIDPEESKYKVT-GRQIEF 72 (108)
T ss_pred ceeeeECCCEEEEEEEeCCC--CCcEEEEE-CCEEEEEEEcCC-----CCeeEEEEeEhhhhccccccEEEec-CCeEEE
Confidence 37889999999999999998 89999999 899999985311 2346788889999999999999999 899999
Q ss_pred EeeccC
Q 009726 520 RVPFEQ 525 (527)
Q Consensus 520 tLPK~~ 525 (527)
+|-|++
T Consensus 73 ~L~K~~ 78 (108)
T cd06465 73 VLRKKE 78 (108)
T ss_pred EEEECC
Confidence 999986
No 34
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.11 E-value=0.0029 Score=52.63 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=65.7
Q ss_pred eEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEEEe
Q 009726 442 NVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVRV 521 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItL 521 (527)
|.+.+++.+.|++.++|+.++++.|++. ++.|.+++... ....|.-.+.|-..|+++..+..+. .+-+.|.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~-~~~l~~~~~~~------~~~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L 72 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFE-KRELSATVKLP------SGNDYSLKLHLLHPIVPEQSSYKIL-STKIEIKL 72 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEe-CCEEEEEEECC------CCCcEEEeeecCceecchhcEEEEe-CcEEEEEE
Confidence 4568899999999999999999999999 88999988642 1124777889999999999999999 88899999
Q ss_pred eccCC
Q 009726 522 PFEQT 526 (527)
Q Consensus 522 PK~~~ 526 (527)
.|+.+
T Consensus 73 ~K~~~ 77 (84)
T cd06489 73 KKTEA 77 (84)
T ss_pred EcCCC
Confidence 99754
No 35
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=96.86 E-value=0.0086 Score=49.31 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=60.7
Q ss_pred eEEEeCCEEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccC-cEEEE
Q 009726 442 NVQRTKDCFEVYALVP-GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLH-GQLFV 519 (527)
Q Consensus 442 DV~Et~D~yvV~adLP-Gv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~n-GVL~I 519 (527)
..+++++.+.|.+.+| |+.++||+|.+. .+.|.|+... . .+.-...|...||++...-.+. + ..|.|
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~-~~~l~v~~~~-------~--~~~l~~~L~~~I~~~~s~w~~~-~~~~v~i 70 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEIT-PKHLKVGVKG-------G--EPLLDGELYAKVKVDESTWTLE-DGKLLEI 70 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEE-cCEEEEEECC-------C--CceEcCcccCceeEcCCEEEEe-CCCEEEE
Confidence 3568899999999997 789999999999 8999998642 1 1112236899999999999999 8 99999
Q ss_pred EeeccCC
Q 009726 520 RVPFEQT 526 (527)
Q Consensus 520 tLPK~~~ 526 (527)
+|+|+.+
T Consensus 71 ~L~K~~~ 77 (85)
T cd06467 71 TLEKRNE 77 (85)
T ss_pred EEEECCC
Confidence 9999864
No 36
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=96.76 E-value=0.018 Score=48.34 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=65.6
Q ss_pred eeeEEEeCCEEEEEEEcCCCCC---CCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEe-CCCCcccCCceEEeccCc
Q 009726 440 KINVQRTKDCFEVYALVPGLLR---EEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVS-LPARIDPHLTSAVVTLHG 515 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~k---EDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~-LP~~VD~d~IsAsy~~nG 515 (527)
+.+.+++++.+.|++.+|+..+ +++.|++. .+.|.|++.-. ....|.-.+. |-..|+++..+..+. .+
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~-~~~l~v~~~~~------~~~~~~~~~~~L~~~I~~e~s~~~~~-~~ 74 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFT-ERSFELKVHDL------NGKNYRFTINRLLKKIDPEKSSFKVK-TD 74 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEec-CCEEEEEEECC------CCcEEEEEehHhhCccCccccEEEEe-CC
Confidence 3677899999999999999987 99999999 88999988421 1124555664 999999999999999 89
Q ss_pred EEEEEeeccCC
Q 009726 516 QLFVRVPFEQT 526 (527)
Q Consensus 516 VL~ItLPK~~~ 526 (527)
-++|+|.|+++
T Consensus 75 ki~i~L~K~~~ 85 (92)
T cd06468 75 RIVITLAKKKE 85 (92)
T ss_pred EEEEEEEeCCC
Confidence 99999999864
No 37
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.74 E-value=0.016 Score=49.03 Aligned_cols=79 Identities=15% Similarity=0.054 Sum_probs=67.9
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEE
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFV 519 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~I 519 (527)
+.|.+.+++.+.|.+.+.|+.++++.|.++ .+.|+|+..-.. ...|.-.+.|-..||++..+-.+. .+-++|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~-~~~l~v~~~~~~------~~~y~~~l~L~~~I~~~~s~~~v~-~~kvei 73 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEAN-STVLTIHIVFEG------NKEFQLDIELWGVIDVEKSSVNML-PTKVEI 73 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEec-CCEEEEEEECCC------CceEEEEeeccceEChhHcEEEec-CcEEEE
Confidence 468889999999999999999999999999 888888765321 235888889999999999999998 999999
Q ss_pred EeeccCC
Q 009726 520 RVPFEQT 526 (527)
Q Consensus 520 tLPK~~~ 526 (527)
+|.|+++
T Consensus 74 ~L~K~~~ 80 (87)
T cd06488 74 KLRKAEP 80 (87)
T ss_pred EEEeCCC
Confidence 9999864
No 38
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.51 E-value=0.024 Score=47.64 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=59.8
Q ss_pred eEEEeCCEEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCc-EEEE
Q 009726 442 NVQRTKDCFEVYALVP-GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHG-QLFV 519 (527)
Q Consensus 442 DV~Et~D~yvV~adLP-Gv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nG-VL~I 519 (527)
+.+.|.+.+.|.+.+| |+.++||+|++. .+.|.|..... ..| -.-.|...||++..+-.++ +| .|.|
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~-~~~l~v~~~~~--------~~~-~~g~L~~~I~~d~Stw~i~-~~~~l~i 70 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFL-PDHISIALKDQ--------APL-LEGKLYSSIDHESSTWIIK-ENKSLEV 70 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEe-cCEEEEEeCCC--------CeE-EeCcccCcccccCcEEEEe-CCCEEEE
Confidence 4568999999999995 999999999999 88999865211 112 2448999999999999998 67 7999
Q ss_pred EeeccC
Q 009726 520 RVPFEQ 525 (527)
Q Consensus 520 tLPK~~ 525 (527)
.|.|++
T Consensus 71 ~L~K~~ 76 (85)
T cd06493 71 SLIKKD 76 (85)
T ss_pred EEEECC
Confidence 999986
No 39
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.54 E-value=0.14 Score=44.53 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=61.1
Q ss_pred CCeeeeEEEeCCEEEEEEEcC-CCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCc
Q 009726 437 DWVKINVQRTKDCFEVYALVP-GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHG 515 (527)
Q Consensus 437 ~wv~vDV~Et~D~yvV~adLP-Gv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nG 515 (527)
..-+...+.|.+.+.|++.+| |+.+.||.|.+. .+.|.|.-. +..-+. =.|...|+++...-+++ +|
T Consensus 4 ~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~-~~~l~V~~~--------g~~~l~--G~L~~~I~~destWtle-d~ 71 (93)
T cd06494 4 KTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLG-SRDISLAVK--------GQEVLK--GKLFDSVVADECTWTLE-DR 71 (93)
T ss_pred cCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEE-cCEEEEEEC--------CEEEEc--CcccCccCcccCEEEEE-CC
Confidence 344578889999999999777 899999999999 889888642 111111 16899999999999999 65
Q ss_pred -EEEEEeeccC
Q 009726 516 -QLFVRVPFEQ 525 (527)
Q Consensus 516 -VL~ItLPK~~ 525 (527)
+|.|+|.|..
T Consensus 72 k~l~I~L~K~~ 82 (93)
T cd06494 72 KLIRIVLTKSN 82 (93)
T ss_pred cEEEEEEEeCC
Confidence 5899999975
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.11 E-value=0.22 Score=52.15 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=67.8
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEE
Q 009726 439 VKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLF 518 (527)
Q Consensus 439 v~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ 518 (527)
++.|.|.+++.++|.+.+.|+.++++.|++. .+.|.|+-... +...|.-.+.|-..|+++..+-.+. .--++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~-~~~l~v~~~~~------~~~~y~~~~~L~~~I~p~~s~~~v~-~~Kie 228 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFG-EQILSVVIEVP------GEDAYHLQPRLFGKIIPDKCKYEVL-STKIE 228 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEee-cCEEEEEEecC------CCcceeecccccccccccccEEEEe-cceEE
Confidence 5689999999999999999999999999999 88999986532 1124666689999999999999998 77899
Q ss_pred EEeeccCC
Q 009726 519 VRVPFEQT 526 (527)
Q Consensus 519 ItLPK~~~ 526 (527)
|+|-|+++
T Consensus 229 i~l~K~~~ 236 (356)
T PLN03088 229 IRLAKAEP 236 (356)
T ss_pred EEEecCCC
Confidence 99998763
No 41
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=93.90 E-value=0.9 Score=40.48 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=62.3
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEE
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFV 519 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~I 519 (527)
.++.+.+.+.+.|++.+|+ .+|++|+++ .+.|+++|.-. .+. .|.-.+.|=..|+++..+-... .--++|
T Consensus 3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~-~~~l~f~~~~~-----~g~-~y~~~l~l~~~I~pe~Sk~~v~-~r~ve~ 72 (106)
T cd00237 3 KTLWYDRRDYVFIEFCVED--SKDVKVDFE-KSKLTFSCLNG-----DNV-KIYNEIELYDRVDPNDSKHKRT-DRSILC 72 (106)
T ss_pred cceeeECCCEEEEEEEeCC--CCCcEEEEe-cCEEEEEEECC-----CCc-EEEEEEEeecccCcccCeEEeC-CceEEE
Confidence 4888999999999999998 689999999 88999998421 112 3666788989999998888887 667888
Q ss_pred EeeccC
Q 009726 520 RVPFEQ 525 (527)
Q Consensus 520 tLPK~~ 525 (527)
.|.|++
T Consensus 73 ~L~K~~ 78 (106)
T cd00237 73 CLRKGK 78 (106)
T ss_pred EEEeCC
Confidence 999875
No 42
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=91.98 E-value=0.45 Score=46.86 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=60.1
Q ss_pred eeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEE
Q 009726 439 VKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLF 518 (527)
Q Consensus 439 v~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~ 518 (527)
++.|.|++...++|.+..+||.++|+.|++. +++|.|.-+-.. ...|.-...|=-.|.+++.+-.+. ---++
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s-~~~l~~~~~~~~------g~~~~l~~~L~~~I~pe~~s~k~~-stKVE 75 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEIS-ENTLSIVIQLPS------GSEYNLQLKLYHEIIPEKSSFKVF-STKVE 75 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEee-cceEEEEEecCC------chhhhhhHHhcccccccceeeEee-eeeEE
Confidence 4689999999999999999999999999999 888888765431 113333444666777777766665 56678
Q ss_pred EEeeccC
Q 009726 519 VRVPFEQ 525 (527)
Q Consensus 519 ItLPK~~ 525 (527)
|+|+|+.
T Consensus 76 I~L~K~~ 82 (196)
T KOG1309|consen 76 ITLAKAE 82 (196)
T ss_pred EEecccc
Confidence 8888854
No 43
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=89.28 E-value=4.3 Score=34.57 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=54.3
Q ss_pred eEEEeCCEEEEEEEcCCC--CCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCC-ceEEeccCcEEE
Q 009726 442 NVQRTKDCFEVYALVPGL--LREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHL-TSAVVTLHGQLF 518 (527)
Q Consensus 442 DV~Et~D~yvV~adLPGv--~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~-IsAsy~~nGVL~ 518 (527)
|.|.+++.++|.+...+. ..+.+.+... .+.|.|+-.-. ...|...+.|=..||++. ++.... -|-++
T Consensus 2 DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~-~~~l~v~~~~~-------~~~~~~~~~L~~~I~~~~~~~~~~~-~~KVE 72 (87)
T cd06490 2 DWFQTDSEVTIVVYTKSKGNPADIVIVDDQ-QRELRVEIILG-------DKSYLLHLDLSNEVQWPCEVRISTE-TGKIE 72 (87)
T ss_pred CceECCCEEEEEEEEcccCCCCccEEEECC-CCEEEEEEECC-------CceEEEeeeccccCCCCcEEEEccc-CceEE
Confidence 678999999999998864 4445555555 66888875422 124777788989998774 443334 56899
Q ss_pred EEeeccCC
Q 009726 519 VRVPFEQT 526 (527)
Q Consensus 519 ItLPK~~~ 526 (527)
|+|.|+++
T Consensus 73 I~L~K~e~ 80 (87)
T cd06490 73 LVLKKKEP 80 (87)
T ss_pred EEEEcCCC
Confidence 99999864
No 44
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=83.95 E-value=9.7 Score=32.60 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=53.9
Q ss_pred EeCCEEEEEEEcC---CCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCc-EEEEE
Q 009726 445 RTKDCFEVYALVP---GLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHG-QLFVR 520 (527)
Q Consensus 445 Et~D~yvV~adLP---Gv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nG-VL~It 520 (527)
.|.+.+.|++.|| |+++.||.|.+. ...|.|.-.-. ..| =.-.|...||++.-.-.++ +| .|.|.
T Consensus 5 QT~~ev~v~v~l~~~~~~~~kdv~v~i~-~~~l~v~~~g~--------~~~-i~G~L~~~V~~des~Wtle-d~~~l~i~ 73 (87)
T cd06492 5 QTLSEVELKVPFKVSFRLKGKDVVVDIQ-RKHLKVGLKGQ--------PPI-IDGELYNEVKVEESSWLIE-DGKVVTVN 73 (87)
T ss_pred eecCEEEEEEECCCCCCccceEEEEEEe-cCEEEEEECCC--------ceE-EeCcccCcccccccEEEEe-CCCEEEEE
Confidence 5678889999985 388999999999 78888854211 112 1226889999999999999 76 89999
Q ss_pred eeccC
Q 009726 521 VPFEQ 525 (527)
Q Consensus 521 LPK~~ 525 (527)
|=|..
T Consensus 74 L~K~~ 78 (87)
T cd06492 74 LEKIN 78 (87)
T ss_pred EEECC
Confidence 98874
No 45
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=79.75 E-value=3.3 Score=31.23 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=28.8
Q ss_pred hhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 009726 267 LKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKAL 316 (527)
Q Consensus 267 ykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyL 316 (527)
.+|..+|..+|.- .|..|+..|+. +-.+..++.+|.+||
T Consensus 10 ~~l~~~v~~~g~~-------~W~~Ia~~~~~----~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 10 EKLLEAVKKYGKD-------NWKKIAKRMPG----GRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHHSTTT-------HHHHHHHHHSS----SSTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCc-------HHHHHHHHcCC----CCCHHHHHHHHHhhC
Confidence 3566677777754 69999999982 223678899999886
No 46
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=71.24 E-value=52 Score=29.34 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=56.6
Q ss_pred eeEEEeCCEEEEEEEcC-CC-CCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCc-EE
Q 009726 441 INVQRTKDCFEVYALVP-GL-LREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHG-QL 517 (527)
Q Consensus 441 vDV~Et~D~yvV~adLP-Gv-~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nG-VL 517 (527)
+-...|-+.+.|++.|| |. +..||.|.+. ...|.|.-.... +...|-- =.|...|+++.-.-.++ +| .|
T Consensus 7 Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~-~~~l~v~~~~~~-----~~~~~i~-G~L~~~V~~des~Wtle-d~~~l 78 (102)
T cd06495 7 YTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQ-SSSIRVSVRDGG-----GEKVLME-GEFTHKINTENSLWSLE-PGKCV 78 (102)
T ss_pred eEEEeECCeEEEEEECCCCCccceEEEEEEE-cCEEEEEEecCC-----CCceEEe-CcccCcccCccceEEEe-CCCEE
Confidence 45567899999999999 54 5789999999 888888653100 0001211 15889999999999999 86 58
Q ss_pred EEEeeccC
Q 009726 518 FVRVPFEQ 525 (527)
Q Consensus 518 ~ItLPK~~ 525 (527)
.|+|=|..
T Consensus 79 ~I~L~K~~ 86 (102)
T cd06495 79 LLSLSKCS 86 (102)
T ss_pred EEEEEECC
Confidence 99998864
No 47
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=53.90 E-value=23 Score=27.46 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=24.6
Q ss_pred hHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhHH
Q 009726 268 KLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALL 317 (527)
Q Consensus 268 kLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyLl 317 (527)
+|...|...|. .|..|++.||- . ....++..|.++|.
T Consensus 8 ~L~~~~~~~g~--------~W~~Ia~~l~~-R----t~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 8 LLLELVKKYGN--------DWKKIAEHLGN-R----TPKQCRNRWRNHLR 44 (60)
T ss_dssp HHHHHHHHHTS---------HHHHHHHSTT-S-----HHHHHHHHHHTTS
T ss_pred HHHHHHHHHCc--------CHHHHHHHHCc-C----CHHHHHHHHHHHCc
Confidence 45566666653 59999999961 1 24677888888663
No 48
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=53.36 E-value=21 Score=34.91 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=33.5
Q ss_pred CCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCC
Q 009726 256 PPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP 297 (527)
Q Consensus 256 ~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~Lgl 297 (527)
+|.-+||..+.|.||..|.++-.-+ =|.|.++|-+||.
T Consensus 45 pPkS~Gk~Fs~~~Lf~LI~k~~~ke----ikTW~~La~~LGV 82 (175)
T PF09441_consen 45 PPKSDGKSFSTFTLFELIRKLESKE----IKTWAQLALELGV 82 (175)
T ss_pred CCCcCCccchHHHHHHHHHHHhhhh----HhHHHHHHHHhCC
Confidence 7999999999999999999875443 4679999999998
No 49
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=53.14 E-value=25 Score=24.49 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=24.4
Q ss_pred hHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 009726 268 KLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKAL 316 (527)
Q Consensus 268 kLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyL 316 (527)
.|...|..+|- +.|..|++.|+. -.+..++..|.+++
T Consensus 9 ~l~~~~~~~g~-------~~w~~Ia~~~~~-----rs~~~~~~~~~~~~ 45 (45)
T cd00167 9 LLLEAVKKYGK-------NNWEKIAKELPG-----RTPKQCRERWRNLL 45 (45)
T ss_pred HHHHHHHHHCc-------CCHHHHHhHcCC-----CCHHHHHHHHHHhC
Confidence 34555555553 569999999964 12457788887653
No 50
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=51.41 E-value=3.9 Score=45.83 Aligned_cols=96 Identities=23% Similarity=0.316 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCC-CCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCC-CCCCCcHHH
Q 009726 229 ESGTEEEQSSFMEELENFFRDRSMEFK-PPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKP-PKTCTTVSW 306 (527)
Q Consensus 229 e~g~~eEr~~Fl~~L~~F~e~RGtp~k-~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~Lgl-P~t~tSas~ 306 (527)
....+..+..|+..|..|++-.+.+++ .+..+...+.+++.+..+...||+...-....|..|+..+++ +.-+..+..
T Consensus 303 ~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~~~~~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 382 (512)
T KOG2744|consen 303 AEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPDLNLFKVFRLECHQGGDSNIPSALQWKQVAKDLGLLPNLNSAASS 382 (512)
T ss_pred cccchhhhccccccCceeccCcchhccCccccccCcccccccccceeeccCcCcCCchhheecccccccccccccccccc
Confidence 455677888999999999999998885 778888999999999999999999999999999999999985 443444566
Q ss_pred HHHHHHHHhHHHHHhhhh
Q 009726 307 TFRGFYEKALLDYERHKT 324 (527)
Q Consensus 307 ~LK~~YeKyLlpYE~~~~ 324 (527)
..+-.|.++|+.+|....
T Consensus 383 ~~~~~~k~~l~~~~~~~~ 400 (512)
T KOG2744|consen 383 NTKLAYKKSLSENEEYCS 400 (512)
T ss_pred ccccccchhhccccccch
Confidence 788889999998887655
No 51
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=47.20 E-value=7.6 Score=38.08 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcH---HHHHHHHH
Q 009726 237 SSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTV---SWTFRGFY 312 (527)
Q Consensus 237 ~~Fl~~L~~F~e~RGtp~k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSa---s~~LK~~Y 312 (527)
..|+..-+..++.+| +++.++.|++.|+.++|+..+--..+-.+.+..|++.+..-++ -|.||..|
T Consensus 14 ls~IevA~~ile~~~----------~~~~F~dii~EI~~~~~~s~~ei~~~i~~FYTdln~DgrFi~LGdn~WgLRswy 82 (175)
T COG3343 14 LSLIEVAHAILEEKK----------KPFNFSDIINEIQKLLGVSKEEIRSRIGQFYTDLNIDGRFISLGDNKWGLRSWY 82 (175)
T ss_pred HHHHHHHHHHHHHcC----------CCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhccCCceeeccccccchhhcc
Confidence 445555555555554 4688899999999999999998888899999999886554444 48888887
No 52
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=41.28 E-value=2e+02 Score=25.95 Aligned_cols=75 Identities=11% Similarity=0.193 Sum_probs=49.8
Q ss_pred eeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCC--CCCCce----eeEEEEEeCCCCcccCCceEEecc
Q 009726 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHP--DNPWGV----TPFKKVVSLPARIDPHLTSAVVTL 513 (527)
Q Consensus 440 ~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~--e~~~~~----~~F~R~~~LP~~VD~d~IsAsy~~ 513 (527)
.+.|...++ ..|+++. ..+.++++.+ +++|.|+...... ...+.+ ..-+=.|.||.....+.++....
T Consensus 67 ~V~I~~~~~-~~i~v~~---~~k~~~~~~~-~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~~- 140 (166)
T PF13349_consen 67 DVEIKPSDD-DKIKVEY---NGKKPEISVE-GGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKTS- 140 (166)
T ss_pred eEEEEEcCC-ccEEEEE---cCcEEEEEEc-CCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEec-
Confidence 366666554 4445555 2226889999 9999999882221 111111 23456799999987789999988
Q ss_pred CcEEEEE
Q 009726 514 HGQLFVR 520 (527)
Q Consensus 514 nGVL~It 520 (527)
+|=++|.
T Consensus 141 ~G~i~i~ 147 (166)
T PF13349_consen 141 SGDITIE 147 (166)
T ss_pred cccEEEE
Confidence 8988775
No 53
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=34.77 E-value=1.4e+02 Score=31.59 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=65.3
Q ss_pred eeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEEEEE
Q 009726 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQLFVR 520 (527)
Q Consensus 441 vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL~It 520 (527)
-|+..|+..++|.+..-|-.++.-.|..+ .-+|.|+=... .+...|---+.|=.-|++++.++.+. ---.+|+
T Consensus 217 ~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~-----~gna~fd~d~kLwgvvnve~s~v~m~-~tkVEIs 289 (320)
T KOG1667|consen 217 HDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFG-----FGNASFDLDYKLWGVVNVEESSVVMG-ETKVEIS 289 (320)
T ss_pred hhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEec-----CCCceeeccceeeeeechhhceEEee-cceEEEE
Confidence 56667888999999999999999999988 77888765542 24458888888888899999999998 7889999
Q ss_pred eeccCC
Q 009726 521 VPFEQT 526 (527)
Q Consensus 521 LPK~~~ 526 (527)
|+|+++
T Consensus 290 l~k~ep 295 (320)
T KOG1667|consen 290 LKKAEP 295 (320)
T ss_pred EeccCC
Confidence 999876
No 54
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.66 E-value=79 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.307 Sum_probs=18.6
Q ss_pred cchhHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 009726 286 KLWRQVGESFKPPKTCTTVSWTFRGFYEKAL 316 (527)
Q Consensus 286 KkW~eVa~~LglP~t~tSas~~LK~~YeKyL 316 (527)
+.|..|+..|+- -....++..|..++
T Consensus 22 ~~w~~Ia~~~~~-----rt~~~~~~~~~~~~ 47 (49)
T smart00717 22 NNWEKIAKELPG-----RTAEQCRERWNNLL 47 (49)
T ss_pred CCHHHHHHHcCC-----CCHHHHHHHHHHHc
Confidence 569999999962 12457778887765
No 55
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=32.16 E-value=46 Score=26.85 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=18.7
Q ss_pred hHHHhhcCCCC-CCCcHHHHHHHHHHHhHHH
Q 009726 289 RQVGESFKPPK-TCTTVSWTFRGFYEKALLD 318 (527)
Q Consensus 289 ~eVa~~LglP~-t~tSas~~LK~~YeKyLlp 318 (527)
+.|++.|+.+. + ...++.|+.||-+.
T Consensus 30 k~I~~~~~~~~lT----~~qV~SH~QKy~~k 56 (57)
T TIGR01557 30 KRILELMVVDGLT----RDQVASHLQKYRLK 56 (57)
T ss_pred HHHHHHcCCCCCC----HHHHHHHHHHHHcc
Confidence 88999998754 3 45778888887653
No 56
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=31.45 E-value=74 Score=24.70 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=20.7
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEecCC
Q 009726 457 PGLLREEVRVQSDPAGRLVISGEPEHP 483 (527)
Q Consensus 457 PGv~kEDI~VqVd~~~~LtIsGeR~~~ 483 (527)
+++...+|+|.+. +|.++|+|.-...
T Consensus 12 ~~~~~~~i~v~v~-~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVE-NGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEE-CTEEEEEEEESSC
T ss_pred cccCCCeEEEEEE-CCEEEEEeeCcHH
Confidence 3677779999999 9999999997543
No 57
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=29.91 E-value=37 Score=36.02 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=55.0
Q ss_pred CeeeeEEEeCCEEEEEEEcCCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCCCCcccCCceEEeccCcEE
Q 009726 438 WVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPARIDPHLTSAVVTLHGQL 517 (527)
Q Consensus 438 wv~vDV~Et~D~yvV~adLPGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP~~VD~d~IsAsy~~nGVL 517 (527)
-+..|..+|.+...|.+--|-+..|+|.+-++ +++|.|+-+.+.. ..-|.-.+.|-..|+++..+-..- --++
T Consensus 176 ~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e-~NTL~I~~q~~~~-----~~~~~~~~~Ly~ev~P~~~s~k~f-sK~~ 248 (368)
T COG5091 176 EIAYDFSETSDTAIIFIYRPPVGDEQVSPVLE-GNTLSISYQPRRL-----RLWNDITISLYKEVYPDIRSIKSF-SKRV 248 (368)
T ss_pred eeeeeccccceeEEEEEecCCCCccccceeec-CCcceeeeecccc-----chHHHhhhhhhhhcCcchhhhhhc-chhh
Confidence 34577889999999999999999999999999 9999998775432 223344455555666666555554 3455
Q ss_pred EEEeec
Q 009726 518 FVRVPF 523 (527)
Q Consensus 518 ~ItLPK 523 (527)
.|.|-|
T Consensus 249 e~~l~K 254 (368)
T COG5091 249 EVHLRK 254 (368)
T ss_pred eehhhh
Confidence 555443
No 58
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=28.33 E-value=77 Score=26.63 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=26.1
Q ss_pred CEEEEEEEcCCCCCCCeEEEEecCCeEEEEE
Q 009726 448 DCFEVYALVPGLLREEVRVQSDPAGRLVISG 478 (527)
Q Consensus 448 D~yvV~adLPGv~kEDI~VqVd~~~~LtIsG 478 (527)
..|.-.+.+|.+..+.|+-++. +|.|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~-dGvL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYE-NGVLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEE-CCEEEEEE
Confidence 4677777899999999999999 99999974
No 59
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=26.72 E-value=83 Score=27.26 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCcccCCceEEeccCcEEEEEeec
Q 009726 491 PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVPF 523 (527)
Q Consensus 491 ~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLPK 523 (527)
.|.=.+.|| .++.+.|+-++. +|.|+|+-=+
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~-~~~L~I~ger 39 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVK-DGKVQVSAER 39 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEE-CCEEEEEEEE
Confidence 677788898 889999999999 9999998754
No 60
>PLN03212 Transcription repressor MYB5; Provisional
Probab=26.64 E-value=69 Score=33.23 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=29.4
Q ss_pred hHHHHHhhcCcceeeccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHH
Q 009726 268 KLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYE 320 (527)
Q Consensus 268 kLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyLlpYE 320 (527)
+|...|.++|. ..|..|++.++.-++ +.++|.-|.+||.|--
T Consensus 35 ~L~~lV~kyG~-------~nW~~IAk~~g~gRT----~KQCReRW~N~L~P~I 76 (249)
T PLN03212 35 ILVSFIKKEGE-------GRWRSLPKRAGLLRC----GKSCRLRWMNYLRPSV 76 (249)
T ss_pred HHHHHHHHhCc-------ccHHHHHHhhhcCCC----cchHHHHHHHhhchhc
Confidence 35556777764 359999999874222 4467888999997753
No 61
>PF09171 DUF1886: Domain of unknown function (DUF1886); InterPro: IPR015254 This entry represents a set of known and suspected archaeal N-glycosylase/DNA lyases. These DNA repair enzymes are part of the base excision repair (BER) pathway; they protect from oxidative damage by removing the major product of DNA oxidation, 8-oxoguanine (GO), from single- and double-stranded DNA substrates [].Cleavage of the N-glycosidic bond between the aberrant base and the sugar-phosphate backbone generates an apurinic (AP) site. Subsequently, the phosphodiester bond 3' from the AP site is cleaved by an elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate. The protein contains two alpha-helical subdomains, with the 8-oxoguanine binding site located in a cleft at their interface. A helix-hairpin-helix (HhH) structural motif and a Gly/Pro-rich sequence followed by a conserved Asp (HhH-GPD motif) are present [].; GO: 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds; PDB: 1XQP_A 1XQO_A 1XG7_A.
Probab=26.64 E-value=49 Score=34.12 Aligned_cols=51 Identities=16% Similarity=0.373 Sum_probs=34.8
Q ss_pred CcchhHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHHhhhhcCCCCCCCccc
Q 009726 285 CKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVAS 335 (527)
Q Consensus 285 ~KkW~eVa~~LglP~t~tSas~~LK~~YeKyLlpYE~~~~~~ge~~~Pi~s 335 (527)
...|.++|+.||-.+..-++.+++|-+|.-+...|-+.....++.++|+|.
T Consensus 123 ~~l~~~La~~L~~~~~~KTiVFAvKM~~Ya~r~~~g~~~~~p~~IpIPvD~ 173 (246)
T PF09171_consen 123 EELWRELAKILNSKPESKTIVFAVKMFGYACRIAFGEFRPYPEEIPIPVDY 173 (246)
T ss_dssp HHHHHHHHHHHTS-TTSHHHHHHHHHHHHHHHHHCTS-----TTS-----H
T ss_pred HHHHHHHHHHhCCCCccchhhHHHHHHHHHHHHhcCCCCCCcccCCCCccH
Confidence 578999999999987777899999999998888777767777888888773
No 62
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=25.73 E-value=1.3e+02 Score=25.81 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.9
Q ss_pred EEEEEEEcC-CCCCCCeEEEEecCCeEEEEEE
Q 009726 449 CFEVYALVP-GLLREEVRVQSDPAGRLVISGE 479 (527)
Q Consensus 449 ~yvV~adLP-Gv~kEDI~VqVd~~~~LtIsGe 479 (527)
.|.=.+.|| +++.+.|+=.+..+|.|+|.|.
T Consensus 51 ~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 51 SFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred EEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 788889998 9999999999733999999874
No 63
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=25.48 E-value=16 Score=34.05 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCeeCCeeechhhHHHHHhhcCcceeeccCcchhHHHhhcCCCCCC---CcHHHHHHHHH
Q 009726 238 SFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPKTC---TTVSWTFRGFY 312 (527)
Q Consensus 238 ~Fl~~L~~F~e~RGtp~k~P~IgGK~LDLykLYkaV~~~GGydkVt~~KkW~eVa~~LglP~t~---tSas~~LK~~Y 312 (527)
.+++.-+.++.++ |+++.++.|++.|++..|+..-....+=.+++..|.+.+.. +.-.|.||..|
T Consensus 4 S~idvAy~iL~~~----------~~~m~f~dL~~ev~~~~~~s~e~~~~~iaq~YtdLn~DGRFi~lG~n~WgLr~w~ 71 (129)
T PRK02363 4 SLIEVAYEILKEK----------KEPMSFYDLVNEIQKYLGKSDEEIRERIAQFYTDLNLDGRFISLGDNKWGLRSWY 71 (129)
T ss_pred cHHHHHHHHHHHc----------CCcccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhccCCeeEcCCCceeccccc
Confidence 4566666777665 57788999999999999987655566777888888775433 33457787754
No 64
>PF14913 DPCD: DPCD protein family
Probab=25.17 E-value=3e+02 Score=27.74 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=53.8
Q ss_pred EEeCCEEEEEEE-cCCCCCCCeEEEEecC-CeEEEEEEecCCCCCCceeeEEEEEeCCC------CcccCCceEEeccCc
Q 009726 444 QRTKDCFEVYAL-VPGLLREEVRVQSDPA-GRLVISGEPEHPDNPWGVTPFKKVVSLPA------RIDPHLTSAVVTLHG 515 (527)
Q Consensus 444 ~Et~D~yvV~ad-LPGv~kEDI~VqVd~~-~~LtIsGeR~~~e~~~~~~~F~R~~~LP~------~VD~d~IsAsy~~nG 515 (527)
..|..+|+-++- || .-++--.|+|+++ +.++|+-.. ..|-++|.+|+ ..+.+.++..+. |-
T Consensus 92 ~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTtN---------KKYyKk~~IPDl~R~~l~l~~~~ls~~h~-nN 160 (194)
T PF14913_consen 92 RDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTTN---------KKYYKKFSIPDLDRCGLPLEQSALSFAHQ-NN 160 (194)
T ss_pred EcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECcC---------ccceeEecCCcHHhhCCCcchhhceeeee-cC
Confidence 456788888874 77 7889999999833 467776432 27888888887 347788999999 99
Q ss_pred EEEEEeecc
Q 009726 516 QLFVRVPFE 524 (527)
Q Consensus 516 VL~ItLPK~ 524 (527)
-|-|+--|.
T Consensus 161 TLIIsYkKP 169 (194)
T PF14913_consen 161 TLIISYKKP 169 (194)
T ss_pred eEEEEecCc
Confidence 999998775
No 65
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=24.37 E-value=56 Score=34.12 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=43.4
Q ss_pred ccCcchhHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHHhhhhcCCCCCCCccc
Q 009726 283 TSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVAS 335 (527)
Q Consensus 283 t~~KkW~eVa~~LglP~t~tSas~~LK~~YeKyLlpYE~~~~~~ge~~~Pi~s 335 (527)
.-...|.++++.||-.+..-++.+++|-+|+-+...+-.+..-..+.++|+|.
T Consensus 131 ~l~~l~~~La~~L~s~~~~KTiVFAvKM~~Ya~r~~~~~~~p~p~~IpIPvD~ 183 (269)
T PRK13280 131 DLEELLEQLAKILGAKKESKTVVFAVKMFGYACRAAFGEFRPYPMEIPIPVDY 183 (269)
T ss_pred hHHHHHHHHHHHhCCCCCcceeeeHHHHHHHHHHHhccccCCCCcCCCCcccH
Confidence 34678999999999987778899999999988887777666656777888764
No 66
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=22.65 E-value=1.2e+02 Score=25.52 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCcccCCceEEeccCcEEEEEee
Q 009726 491 PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522 (527)
Q Consensus 491 ~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLP 522 (527)
.|.=.+.|| +++++.|+-.+. +|.|+|+-=
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~-~~~L~I~g~ 37 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVL-GDFVEIHGK 37 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEE-CCEEEEEEE
Confidence 688889998 899999999999 999999864
No 67
>PRK10568 periplasmic protein; Provisional
Probab=20.76 E-value=4.3e+02 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=20.7
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEecC
Q 009726 457 PGLLREEVRVQSDPAGRLVISGEPEH 482 (527)
Q Consensus 457 PGv~kEDI~VqVd~~~~LtIsGeR~~ 482 (527)
+++...+|+|.+. +|.++++|.-..
T Consensus 73 ~~i~~~~I~V~v~-~G~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTH-QKVVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEE-CCEEEEEEEeCC
Confidence 4566778999999 999999999764
No 68
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=1.1e+02 Score=29.90 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEEecCCeEEEEEEecCCCCCCceeeEEEEEeCC
Q 009726 457 PGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLP 499 (527)
Q Consensus 457 PGv~kEDI~VqVd~~~~LtIsGeR~~~e~~~~~~~F~R~~~LP 499 (527)
.||+++.|+=++..+|.|+|.+.+...... ++|.|++.
T Consensus 125 ~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~-----~er~ipI~ 162 (173)
T KOG3591|consen 125 EDVDPTSVTSTLSSDGVLTIEAPKPPPKQD-----NERSIPIE 162 (173)
T ss_pred CCCChhheEEeeCCCceEEEEccCCCCcCc-----cceEEeEe
Confidence 599999999999999999999987654222 56666553
No 69
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=20.46 E-value=1.3e+02 Score=25.63 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCcccCCceEEeccCcEEEEEee
Q 009726 491 PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522 (527)
Q Consensus 491 ~F~R~~~LP~~VD~d~IsAsy~~nGVL~ItLP 522 (527)
.|.=.+.|| +++++.|+-.+. +|+|+|+-=
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~-~~~L~I~g~ 40 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVL-DDYVEIHGK 40 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEE-CCEEEEEEE
Confidence 678888997 889999999999 999999864
No 70
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=20.22 E-value=1.4e+02 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=27.0
Q ss_pred CCEEEEEEEcC-CCCCCCeEEEEecCCeEEEEE
Q 009726 447 KDCFEVYALVP-GLLREEVRVQSDPAGRLVISG 478 (527)
Q Consensus 447 ~D~yvV~adLP-Gv~kEDI~VqVd~~~~LtIsG 478 (527)
...|.-.+.|| +++.+.|+-++. +|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~-nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLE-NGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEE-CCEEEEEe
Confidence 35888899999 689999999999 99999973
Done!