BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009727
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/512 (44%), Positives = 325/512 (63%), Gaps = 15/512 (2%)
Query: 23 QEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHE 82
+E+F+ C S + ++++ Q LY IL S++QN R+++ TTPKPL+I+TP +
Sbjct: 4 RENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNN 63
Query: 83 SEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQ 142
S IQA + CSK LQIR RSGGHD EG+SY+ + PF+++DL NM SI+I++ +TAWV+
Sbjct: 64 SHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVE 123
Query: 143 SGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLI 202
+GA LGE+YY + K+ FP G CPTV LAAD ++DA+L+
Sbjct: 124 AGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLV 183
Query: 203 DVNGRILDRRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGAL 261
+V+G++LDR++MGEDLFWA WKIKLV VP T F+V K +E G +
Sbjct: 184 NVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLV 243
Query: 262 ELVHRWQYIAPKFHEDL-----FIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQ 316
+L ++WQ IA K+ +DL FI I ++ T+H F+S+F G +D L+ LMN+
Sbjct: 244 KLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNK 303
Query: 317 SFPELGLRAEDCTEMSWVESTVYFAGF----SKGSPLEMLLDKKQLFKSMFKAKSDFVTE 372
SFPELG++ DC E SW+++T++++G + E+LLD+ K+ F K D+V +
Sbjct: 304 SFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKK 363
Query: 373 PIPFHALEGIWGRLLEEEM--AIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWE 430
PIP A+ I +L EE++ + ++ P+GG M EI ES +PFPHR G++Y + Y WE
Sbjct: 364 PIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 431 ANGVMASNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLG-TNKLQNASYSEAAAWGI 489
+ +HI+W+RS+Y + PYVS++PR AY+NYRDLDLG TN +Y++A WG
Sbjct: 424 KQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGE 481
Query: 490 KYFKSNFKRLALVKSKVDPGNFFRNEQSIPPF 521
KYF NF RL VK+KVDP NFFRNEQSIPP
Sbjct: 482 KYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 434 bits (1116), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/507 (43%), Positives = 305/507 (60%), Gaps = 20/507 (3%)
Query: 19 SSSIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIIT 78
+ ++ DF+ C++ ++ + S Y+ + S+V+N ++L+ T KPL IIT
Sbjct: 6 AKQVERDFLTCLTKDIPP-----RQLYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIIT 60
Query: 79 PFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTP--FIIIDLINMRSIEINLED 136
P + S IQAAV C + H ++IRVRSGGHDYEGLSY P F ++D+ MR++ I+ +
Sbjct: 61 PTNASHIQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKA 120
Query: 137 ETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQV 196
TAWV SGA LG+LYY +A S GFPAG+C T+ AAD V
Sbjct: 121 ATAWVDSGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNV 180
Query: 197 VDAYLIDVNGRILDRRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTL 256
+DA ++D GR+LDR+AMGED FWA W++KL+ VP VT F V K +
Sbjct: 181 IDAKVVDAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGI 240
Query: 257 EQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQ 316
++GA++LV +WQ +AP +DL IRI+ + G A F +L+LG L+ LM
Sbjct: 241 KEGAIDLVTKWQTVAPALPDDLMIRIMAMGQG--------AMFEALYLGTCKDLVLLMTA 292
Query: 317 SFPELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPF 376
FPELG+ A C EM+W+ES Y KG+ + LL++ K+ K KSD+V EPIP
Sbjct: 293 RFPELGMNATHCKEMTWIESVPYIPMGPKGT-VRDLLNRTSNIKAFGKYKSDYVLEPIPK 351
Query: 377 HALEGIWGRLLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMA 436
E I+ L++ +MIMDP+GG + + ES PFP R+GVL+NIQY+V W G A
Sbjct: 352 SDWEKIFTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG--A 409
Query: 437 SNRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQN--ASYSEAAAWGIKYFKS 494
+ W R +Y +M PYVS++PR AY+NYRDLDLG N++ ++Y+ WG KYFK
Sbjct: 410 AALPTQWTRDIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKG 469
Query: 495 NFKRLALVKSKVDPGNFFRNEQSIPPF 521
NF+RLA K K+DP ++FRNEQSIPP
Sbjct: 470 NFERLARTKGKIDPEDYFRNEQSIPPL 496
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/506 (40%), Positives = 301/506 (59%), Gaps = 20/506 (3%)
Query: 21 SIQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPF 80
+ +EDF+ C+ + +++ + S Y +L +++N R+ + KPL IITP
Sbjct: 6 AAKEDFLGCLVKEIPP-----RLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPT 60
Query: 81 HESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTP--FIIIDLINMRSIEINLEDET 138
S IQ+AV C + H ++IRVRSGGHDYEGLSY P F ++DL MR++ ++ + T
Sbjct: 61 QVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKART 120
Query: 139 AWVQSGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVD 198
AWV SGA LGELYYA+ S FPAG+CPT+ +AA+ V+D
Sbjct: 121 AWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVID 180
Query: 199 AYLIDVNGRILDRRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLEQ 258
L+D NG++ D+++MG+D FWA W++KL+ VP TVT F + KT+ +
Sbjct: 181 VKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSE 240
Query: 259 GALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSF 318
GA++++++WQ +AP+ DL IRI+ + A F +++LG L PLM+ F
Sbjct: 241 GAVDIINKWQVVAPQLPADLMIRII--------AQGPKATFEAMYLGTCKTLTPLMSSKF 292
Query: 319 PELGLRAEDCTEMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHA 378
PELG+ C EMSW++S + + + + LL+++ FK + KSD+V +P P
Sbjct: 293 PELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTV 352
Query: 379 LEGIWGR-LLEEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMAS 437
E I L++ IMI DP+G ++ ES PFPHR GVL+NIQY+ W A G A+
Sbjct: 353 WEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAA 412
Query: 438 NRHIHWIRSLYKYMAPYVSRSPRAAYINYRDLDLGTNKLQN--ASYSEAAAWGIKYFKSN 495
+ W + +Y YM PYVS++PR AY NYRD+DLG N++ N ++Y+ WG KYFK N
Sbjct: 413 --PLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGN 470
Query: 496 FKRLALVKSKVDPGNFFRNEQSIPPF 521
F+RLA+ K KVDP ++FRNEQSIPP
Sbjct: 471 FERLAITKGKVDPTDYFRNEQSIPPL 496
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 357 bits (916), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 197/491 (40%), Positives = 264/491 (53%), Gaps = 13/491 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 22 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 81
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 82 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 141
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG CPTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 142 FTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 201
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 202 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 261
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 262 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 317
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 318 GLETVSQLNNRFLK--FDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 375
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 376 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 435
Query: 462 AYINYRDLDLGTNKLQNASYSEAA-----AWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDLG N + A +WG YF SN++RL K+ +DP N F + Q
Sbjct: 436 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 495
Query: 517 SIPPFGEIKHL 527
SIPP +L
Sbjct: 496 SIPPMANFDYL 506
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 357 bits (916), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 197/491 (40%), Positives = 264/491 (53%), Gaps = 13/491 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 22 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 81
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 82 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 141
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG CPTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 142 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 201
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 202 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 261
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 262 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 317
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 318 GLETVSQLNNRFLK--FDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 375
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 376 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 435
Query: 462 AYINYRDLDLGTNKLQNASYSEAA-----AWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDLG N + A +WG YF SN++RL K+ +DP N F + Q
Sbjct: 436 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 495
Query: 517 SIPPFGEIKHL 527
SIPP +L
Sbjct: 496 SIPPMANFDYL 506
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 357 bits (916), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 196/491 (39%), Positives = 265/491 (53%), Gaps = 13/491 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 41 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 100
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 101 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 160
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG CPTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 161 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 220
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 221 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 280
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 281 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 336
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 337 GLETVSQLNNRFLKFD--ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 394
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 395 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 454
Query: 462 AYINYRDLDL-----GTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDL G + N + + +WG YF SN++RL K+ +DP N F + Q
Sbjct: 455 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 514
Query: 517 SIPPFGEIKHL 527
SIPP +L
Sbjct: 515 SIPPMANFDYL 525
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 355 bits (911), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 195/484 (40%), Positives = 263/484 (54%), Gaps = 13/484 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG CPTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 136 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 256 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 311
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 312 GLETVSQLNNRFLKFD--ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 369
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 370 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 429
Query: 462 AYINYRDLDL-----GTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDL G + N + + +WG YF SN++RL K+ +DP N F + Q
Sbjct: 430 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 489
Query: 517 SIPP 520
SIPP
Sbjct: 490 SIPP 493
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 351 bits (901), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 195/484 (40%), Positives = 261/484 (53%), Gaps = 13/484 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 19 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 78
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGG YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 79 SGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 138
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG CPTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 139 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 198
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 199 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 258
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 259 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 314
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 315 GLETVSQLNNRFLKFD--ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 372
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 373 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 432
Query: 462 AYINYRDLDLGTNKLQNASYSEAA-----AWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDLG N + A +WG YF SN++RL K+ +DP N F + Q
Sbjct: 433 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 492
Query: 517 SIPP 520
SIPP
Sbjct: 493 SIPP 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 195/484 (40%), Positives = 261/484 (53%), Gaps = 13/484 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG PTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 136 FTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 256 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 311
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 312 GLETVSQLNNRFLKFD--ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 369
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 370 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 429
Query: 462 AYINYRDLDLGTNKLQNASYSEAA-----AWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDLG N + A +WG YF SN++RL K+ +DP N F + Q
Sbjct: 430 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 489
Query: 517 SIPP 520
SIPP
Sbjct: 490 SIPP 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 351 bits (900), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 195/484 (40%), Positives = 261/484 (53%), Gaps = 13/484 (2%)
Query: 44 IFNQDS-SLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102
+F+ DS S ++ L S+QNP + N+ KP II P + E+ + C + IR+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 103 SGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVHG 162
SGGH YEGLSY TPFI+IDL+N+ + I+LE ETAWV+SG+ LGELYYA+ S G
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 163 FPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRILDRRAMGEDLFWAX 222
F AG PTV LAAD VVDA LID NG ILDR+AMGED+FWA
Sbjct: 136 FTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 223 XXXXXXXXXXXXXWKIKLVRVPETVTSFTVLKTLE-QGALELVHRWQYIAPKFHEDLFIR 281
WKIKL+ VPE VT F V K + A L+H+WQ++A + ED +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 282 ILIVHVGNGDQKTIHANFNSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSWVESTVYFA 341
+L G D+K + G + FPELGL ED EMSW ES Y A
Sbjct: 256 VL----GGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFAYLA 311
Query: 342 GFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGG 401
G S L K + FK K D EP+P A G+ RL +E + ++ FGG
Sbjct: 312 GLETVSQLNNRFLKFD--ERAFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGG 369
Query: 402 KMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRA 461
+M++I PFPHR+G ++Y+V W + + W+ +Y++M P+VS++PR
Sbjct: 370 QMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRL 429
Query: 462 AYINYRDLDLGTNKLQNASYSEAA-----AWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516
Y+N+ DLDLG N + A +WG YF SN++RL K+ +DP N F + Q
Sbjct: 430 GYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQ 489
Query: 517 SIPP 520
SIPP
Sbjct: 490 SIPP 493
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 116/476 (24%), Positives = 189/476 (39%), Gaps = 69/476 (14%)
Query: 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEI 132
P I + IQ+AV C+K +L++ +SGGH Y + +++ L M + I
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMIDV-I 95
Query: 133 NLEDET--AWVQSGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXXX 190
+ D+T A V+ GA LG L L K G CP V
Sbjct: 96 SYNDKTGIAHVEPGARLGHLATVLNDK-YGRAISHGTCPGVGISGHFAHGGFGFSSHMHG 154
Query: 191 LAADQVVDAYLIDVNGRILDRRAM-GEDLFWAXXXXXXXXXXXXXXWKIKLVRVPETVTS 249
LA D VV ++ +GRI++ A DLFW WK+ P+ +T
Sbjct: 155 LAVDSVVGVTVVLADGRIVEASATENADLFWG-IKGAGSNFGIVAVWKLATFPAPKVLTR 213
Query: 250 FTV----------LKTLEQGALELVHRWQYIAPKFHEDLFIRILIVHVGNGDQKTIHANF 299
F V LK +E A+E RW +AP+ ++ RI GD +
Sbjct: 214 FGVTLNWKNKTSALKGIE--AVEDYARW--VAPR---EVNFRI-------GDYGAGNPGI 259
Query: 300 NSLFLGKIDR----LIPLMNQSFPELGLRAEDCTEMSWVESTVYFAGFS-----KGSPLE 350
L+ G ++ PL++ + P G T ++W+ES + ++ F P+E
Sbjct: 260 EGLYYGTPEQWRAAFQPLLD-TLPA-GYVVNPTTSLNWIESVLSYSNFDHVDFITPQPVE 317
Query: 351 MLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGK---MNEIL 407
K KS+ K D V + ++ +++ +D GGK + ++
Sbjct: 318 NFYAKSLTLKSI---KGDAVKNFVDYYFDV---SNKVKDRFWFYQLDVHGGKNSQVTKVT 371
Query: 408 ESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHI---HWIRSLYKYMAPYVSRSPRAAYI 464
+E +PHR+ L+ IQ+ +++ N W+ S+ K + +S YI
Sbjct: 372 NAETAYPHRD-KLWLIQFYDRYDNNQTYPETSFKFLDGWVNSVTKAL----PKSDWGMYI 426
Query: 465 NYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPP 520
NY D + + Y E N RL +K+K DP + F Q++ P
Sbjct: 427 NYADPRMDRDYATKVYYGE-----------NLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 113/500 (22%), Positives = 187/500 (37%), Gaps = 82/500 (16%)
Query: 72 KPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFI--IIDLINMRS 129
+P ++ ++ AV + +I VRSGGH +EG P + +ID+ MR
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGF---VDDPAVRAVIDMSQMRQ 111
Query: 130 IEINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVXXXXXXXXXXXXXXXXXX 189
+ + V+ GA LGE Y AL + V PAG+CP V
Sbjct: 112 VFYDSGKRAFAVEPGATLGETYRALYLDWGVT-IPAGVCPQVGVGGHVLGGGYGPLSRRD 170
Query: 190 XLAADQV--VDAYLIDVNGRILDRRAMG------EDLFWAXXXXXXXXXXXXXXWKIKLV 241
+ AD + V+ ++D +GR A +L+WA + +
Sbjct: 171 GVVADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTP 230
Query: 242 RVPETVTSFTVLKTLEQGALELVHRWQYIAPKFHEDLFIRIL----IVHVGNGDQKTIHA 297
T S +L L + W + A E+ F RI+ H N T +A
Sbjct: 231 GATGTDPS-QLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAAGTPYA 287
Query: 298 NFNSLFL----------------GKIDRLIPLMNQSFPEL--GLRAEDCTEMS---WVES 336
+ +S+F G +D L+N + G E + S W+ +
Sbjct: 288 SMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPWLRA 347
Query: 337 TVY----FAGF----SKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLE 388
T+ GF SKG+ L Q ++++ S A +WG +
Sbjct: 348 TLANKFDTGGFDRTKSKGAYLRKPWTAAQA-ATLYRHLS----------ADSQVWGEVS- 395
Query: 389 EEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLY 448
+ +GGK+N + E+ R+ ++ + W +N + WIR +Y
Sbjct: 396 -------LYSYGGKVNSVPETATATAQRDSII-KVWMSATWMDPAHDDAN--LAWIREIY 445
Query: 449 KYM------APYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALV 502
+ + P +INY D+DL + + W Y+K N+ RL V
Sbjct: 446 REIFATTGGVPVPDDRTEGTFINYPDVDLVDERWN----TSGVPWYTLYYKGNYPRLQKV 501
Query: 503 KSKVDPGNFFRNEQSIPPFG 522
K++ DP + FR+ S+ P G
Sbjct: 502 KARWDPRDVFRHALSVRPPG 521
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 82/197 (41%), Gaps = 26/197 (13%)
Query: 330 EMSWVESTVYFAGFSKGSPLEMLLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEE 389
E W+ ST G S + +K+L +A + +T ++GI
Sbjct: 347 EQRWLASTPGRGGRGPASKTKAGYLRKRLTDRQIQAVYENMTH------MDGI------- 393
Query: 390 EMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSLYK 449
+ + + +GGK+N + + P R+ +L + Y+ W G A +H+ W+R LY
Sbjct: 394 DYGAVWLIGYGGKVNTVDPAATALPQRDAIL-KVNYITGWANPGNEA--KHLTWVRKLYA 450
Query: 450 YM------APYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVK 503
+ P + AYINY D DL L + W Y+K N RL VK
Sbjct: 451 DVYAETGGVPVPNDVSDGAYINYPDSDLADPGLN----TSGVPWHDLYYKGNHPRLRKVK 506
Query: 504 SKVDPGNFFRNEQSIPP 520
+ DP N F + SI P
Sbjct: 507 AAYDPRNHFHHALSIRP 523
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 388 EEEMAIMIMDPFGGKMNEILESEVPFPHRNGVLYNIQYMVKWEANGVMASNRHIHWIRSL 447
+ ++ + +GGK+N + R+ +L I Y+ WE H+ WIR L
Sbjct: 396 DNPAGVVALIAYGGKVNAVPADRTAVAQRDSIL-KIVYVTTWEDPA--QDPVHVRWIREL 452
Query: 448 YKYM------APYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLAL 501
Y+ + P + AY+NY D+DL + + W Y+K + RL
Sbjct: 453 YRDVYADTGGVPVPGGAADGAYVNYPDVDLADEEWN----TSGVPWSELYYKDAYPRLQA 508
Query: 502 VKSKVDPGNFFRNEQS--IPP 520
VK++ DP N FR+ S +PP
Sbjct: 509 VKARWDPRNVFRHALSVRVPP 529
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 83 SEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPF-IIIDLINMRSIEINLEDETAWV 141
+EI+ + + ++ VRSGGH YE ++ + +++D+ + ++ + E V
Sbjct: 69 AEIEQVLSRAVRSGKRVAVRSGGHCYE--DFVANSDVRVVMDMSRLSAVGFDEERGAFAV 126
Query: 142 QSGANLGELYYALAMKSLVHGFPAGLCPTV 171
++GA LG +Y L + P G CP V
Sbjct: 127 EAGATLGAVYKTL-FRVWGVTLPGGACPDV 155
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 42 EIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRV 101
E+I+ DS + +++ + R+L +P LI ++ +V + ++ L+I V
Sbjct: 15 EVIYPDDSGFDAI---ANIWDGRHLQ----RPSLIARCLSAGDVAKSVRYACDNGLEISV 67
Query: 102 RSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGELYYALAMKSLVH 161
RSGGH+ G Y I++DL M SI I+ A + G G+L A L
Sbjct: 68 RSGGHNPNG--YATNDGGIVLDLRLMNSIHIDTAGSRARIGGGVISGDLVKEAAKFGLAA 125
Query: 162 GFPAGLCPTVXXXXXXXXXXXXXXXXXXXLAADQVVDAYLIDVNGRIL----DRRAMGED 217
G+ P V LA+D ++ A L+ G ++ D R +
Sbjct: 126 --VTGMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDDER---PE 180
Query: 218 LFWA 221
LFWA
Sbjct: 181 LFWA 184
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%)
Query: 453 PYVSRSPRAAYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFF 512
P ++R AA + G L N S A Y + RLA VK + DP N F
Sbjct: 389 PELARELDAALLRAGVTTSGFGLLNNNSEVTAEMVAEVYKPEVYSRLAAVKREYDPENRF 448
Query: 513 RNEQSIPPFG 522
R+ +I P G
Sbjct: 449 RHNYNIDPEG 458
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 100/484 (20%), Positives = 178/484 (36%), Gaps = 72/484 (14%)
Query: 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEI 132
P I P +I AAV C + +QI + GGH Y + ++++L M + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 133 NLEDETAWVQSGANLGELYYALAM-----KSLVHGFPAGLCPTVXXXXXXXXXXXXXXXX 187
+ ++ A +Q GA LG Y AL + ++L H G CP V
Sbjct: 103 D-DNNVATIQGGARLG--YTALELLDQGNRALSH----GTCPAVGVGGHVLGGGYGFATH 155
Query: 188 XXXLAADQVVDAYLIDVNGRILD-RRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPET 246
L D ++ A ++ + I+ DLFWA ++ PE
Sbjct: 156 THGLTLDWLIGATVVLADASIVHVSETENADLFWA-LRGGGGGFAIVSEFEFNTFEAPEI 214
Query: 247 VTSFTVLKTLEQ----GALELVHRW-QYIAPKFHEDLFIRILIVHVGNGDQKTIHANF-- 299
+T++ V T + L+ + W Q P+ +L +R+ I N + NF
Sbjct: 215 ITTYQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEI----NANALNWEGNFFG 267
Query: 300 NSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSW---VESTVYFAGFSKGSPLEM----- 351
N+ L KI L P+M ++ + + E W + + +Y A + ++
Sbjct: 268 NAKDLKKI--LQPIMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFY 323
Query: 352 --LLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGK---MNEI 406
L +L +A D+ + G W + D GGK + +
Sbjct: 324 ANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAV 373
Query: 407 LESEVPFPHRNGV----LYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAA 462
E + HR+ + Y+ Y +E N +++ + + +
Sbjct: 374 SNDETAYAHRDQLWLWQFYDSIY--DYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGK 431
Query: 463 YINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFG 522
Y NY D L + Q Y++ N ++L +K+K DP + F N S+ P
Sbjct: 432 YFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIA 480
Query: 523 EIKH 526
++
Sbjct: 481 YLEQ 484
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 99/484 (20%), Positives = 177/484 (36%), Gaps = 72/484 (14%)
Query: 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEI 132
P I P +I AAV C + +QI + GGH Y + ++++L M + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 133 NLEDETAWVQSGANLGELYYALAM-----KSLVHGFPAGLCPTVXXXXXXXXXXXXXXXX 187
+ ++ A +Q GA LG Y AL + ++L H G P V
Sbjct: 103 D-DNNVATIQGGARLG--YTALELLDQGNRALSH----GTAPAVGVGGHVLGGGYGFATH 155
Query: 188 XXXLAADQVVDAYLIDVNGRILD-RRAMGEDLFWAXXXXXXXXXXXXXXWKIKLVRVPET 246
L D ++ A ++ + I+ DLFWA ++ PE
Sbjct: 156 THGLTLDWLIGATVVLADASIVHVSETENADLFWA-LRGGGGGFAIVSEFEFNTFEAPEI 214
Query: 247 VTSFTVLKTLEQ----GALELVHRW-QYIAPKFHEDLFIRILIVHVGNGDQKTIHANF-- 299
+T++ V T + L+ + W Q P+ +L +R+ I N + NF
Sbjct: 215 ITTYQVTTTWNRKQHVAGLKALQDWAQNTMPR---ELSMRLEI----NANALNWEGNFFG 267
Query: 300 NSLFLGKIDRLIPLMNQSFPELGLRAEDCTEMSW---VESTVYFAGFSKGSPLEM----- 351
N+ L KI L P+M ++ + + E W + + +Y A + ++
Sbjct: 268 NAKDLKKI--LQPIMKKAGGKSTISK--LVETDWYGQINTYLYGADLNITYNYDVHEYFY 323
Query: 352 --LLDKKQLFKSMFKAKSDFVTEPIPFHALEGIWGRLLEEEMAIMIMDPFGGK---MNEI 406
L +L +A D+ + G W + D GGK + +
Sbjct: 324 ANSLTAPRLSDEAIQAFVDYKFDNSSVRPGRGWW----------IQWDFHGGKNSALAAV 373
Query: 407 LESEVPFPHRNGV----LYNIQYMVKWEANGVMASNRHIHWIRSLYKYMAPYVSRSPRAA 462
E + HR+ + Y+ Y +E N +++ + + +
Sbjct: 374 SNDETAYAHRDQLWLWQFYDSIY--DYENNTSPYPESGFEFMQGFVATIEDTLPEDRKGK 431
Query: 463 YINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIPPFG 522
Y NY D L + Q Y++ N ++L +K+K DP + F N S+ P
Sbjct: 432 YFNYADTTLTKEEAQKL-----------YWRGNLEKLQAIKAKYDPEDVFGNVVSVEPIA 480
Query: 523 EIKH 526
++
Sbjct: 481 YLEQ 484
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,424,008
Number of Sequences: 62578
Number of extensions: 562968
Number of successful extensions: 1216
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 24
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)