Query 009727
Match_columns 527
No_of_seqs 269 out of 2298
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 16:36:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 4.6E-39 9.9E-44 341.6 42.9 200 64-267 56-265 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 4.1E-34 8.9E-39 301.6 31.9 195 64-270 6-203 (438)
3 PRK11230 glycolate oxidase sub 100.0 4.8E-34 1E-38 306.1 26.1 198 69-268 52-255 (499)
4 TIGR01677 pln_FAD_oxido plant- 100.0 4.8E-33 1E-37 299.3 33.5 181 64-247 23-215 (557)
5 TIGR01679 bact_FAD_ox FAD-link 100.0 1.7E-32 3.6E-37 289.1 29.9 175 64-247 3-179 (419)
6 COG0277 GlcD FAD/FMN-containin 100.0 1.2E-32 2.6E-37 295.3 28.4 185 69-256 28-219 (459)
7 PLN02805 D-lactate dehydrogena 100.0 4E-33 8.7E-38 300.5 22.9 194 71-268 132-332 (555)
8 TIGR01676 GLDHase galactonolac 100.0 1.9E-31 4.1E-36 283.2 22.9 177 64-247 53-232 (541)
9 KOG1231 Proteins containing th 100.0 9.7E-31 2.1E-35 262.3 20.6 175 68-245 59-240 (505)
10 TIGR00387 glcD glycolate oxida 100.0 1.5E-30 3.3E-35 274.5 19.8 191 76-268 1-198 (413)
11 PRK11282 glcE glycolate oxidas 100.0 7.5E-30 1.6E-34 260.4 19.7 182 81-268 3-193 (352)
12 PLN02465 L-galactono-1,4-lacto 100.0 7E-28 1.5E-32 258.0 23.2 176 64-246 88-266 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.9E-27 1.1E-31 210.9 13.4 136 73-210 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 5.1E-25 1.1E-29 222.1 16.5 164 69-244 27-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 1.2E-24 2.5E-29 227.9 18.8 203 70-276 36-298 (564)
16 KOG1232 Proteins containing th 99.9 5.2E-23 1.1E-27 202.0 11.4 188 60-249 77-271 (511)
17 PRK14652 UDP-N-acetylenolpyruv 99.9 5.4E-22 1.2E-26 199.5 16.8 163 69-244 32-196 (302)
18 KOG4730 D-arabinono-1, 4-lacto 99.9 3.8E-22 8.2E-27 200.7 14.7 182 65-252 42-226 (518)
19 TIGR00179 murB UDP-N-acetyleno 99.9 4.7E-22 1E-26 198.7 14.5 163 69-242 9-174 (284)
20 PRK12436 UDP-N-acetylenolpyruv 99.9 5.1E-22 1.1E-26 200.1 14.3 163 69-243 33-197 (305)
21 PRK13906 murB UDP-N-acetylenol 99.9 1.2E-21 2.6E-26 197.4 14.5 162 70-243 34-197 (307)
22 KOG1233 Alkyl-dihydroxyacetone 99.9 5.9E-21 1.3E-25 187.8 15.4 191 65-256 153-352 (613)
23 PRK13903 murB UDP-N-acetylenol 99.9 1E-20 2.2E-25 193.5 16.0 165 69-244 29-197 (363)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 1.7E-19 3.7E-24 181.0 17.1 166 69-244 17-193 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.8 5.1E-18 1.1E-22 169.7 14.0 162 69-244 30-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 1.1E-16 2.3E-21 157.1 14.7 165 69-243 17-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 1.3E-16 2.8E-21 159.1 13.4 164 69-244 29-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 1.7E-16 3.6E-21 160.7 12.3 163 69-243 17-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 9.1E-16 2E-20 155.0 13.7 168 69-244 26-237 (354)
30 PF08031 BBE: Berberine and be 99.6 1.1E-16 2.4E-21 115.0 3.6 47 462-519 1-47 (47)
31 KOG1262 FAD-binding protein DI 99.6 1.5E-14 3.3E-19 143.2 11.7 131 120-252 104-237 (543)
32 PRK14651 UDP-N-acetylenolpyruv 99.5 7.4E-14 1.6E-18 137.5 12.3 150 71-243 19-170 (273)
33 PRK13904 murB UDP-N-acetylenol 99.3 2.3E-11 4.9E-16 118.8 10.3 144 70-244 16-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.4 0.02 4.3E-07 53.1 4.5 76 74-153 3-80 (171)
35 PRK09799 putative oxidoreducta 94.9 0.087 1.9E-06 52.2 7.8 140 75-239 4-155 (258)
36 PRK09971 xanthine dehydrogenas 94.6 0.066 1.4E-06 54.1 6.2 102 75-180 6-118 (291)
37 TIGR03312 Se_sel_red_FAD proba 94.0 0.19 4E-06 49.8 7.6 99 76-180 4-109 (257)
38 TIGR02963 xanthine_xdhA xanthi 93.3 0.22 4.8E-06 53.7 7.5 104 73-180 192-303 (467)
39 PLN00107 FAD-dependent oxidore 93.2 0.36 7.8E-06 47.2 8.0 28 487-516 171-198 (257)
40 PF09265 Cytokin-bind: Cytokin 92.4 0.061 1.3E-06 53.5 1.4 33 485-518 248-280 (281)
41 TIGR03195 4hydrxCoA_B 4-hydrox 92.0 0.27 5.9E-06 50.2 5.7 100 75-179 6-116 (321)
42 TIGR03199 pucC xanthine dehydr 89.7 0.44 9.6E-06 47.4 4.6 98 79-180 1-109 (264)
43 PF04030 ALO: D-arabinono-1,4- 87.5 0.59 1.3E-05 46.3 3.8 28 486-515 227-254 (259)
44 PF02913 FAD-oxidase_C: FAD li 85.9 1.8 3.9E-05 41.7 6.3 28 486-513 216-244 (248)
45 PLN02906 xanthine dehydrogenas 85.2 1.4 3.1E-05 53.6 6.1 79 74-156 229-309 (1319)
46 PLN00192 aldehyde oxidase 84.8 2.3 5E-05 51.9 7.6 84 73-157 233-317 (1344)
47 TIGR02969 mam_aldehyde_ox alde 83.6 2.7 5.9E-05 51.3 7.5 78 74-155 237-316 (1330)
48 COG4630 XdhA Xanthine dehydrog 80.4 3.8 8.3E-05 42.1 6.0 140 73-223 203-352 (493)
49 PLN02805 D-lactate dehydrogena 72.6 8 0.00017 42.7 6.5 36 484-519 514-550 (555)
50 COG1319 CoxM Aerobic-type carb 72.3 11 0.00025 37.7 6.9 75 73-151 3-80 (284)
51 TIGR00387 glcD glycolate oxida 66.0 4.2 9.1E-05 43.2 2.5 29 485-513 381-410 (413)
52 KOG4730 D-arabinono-1, 4-lacto 51.4 7.5 0.00016 41.0 1.3 20 494-513 485-504 (518)
53 PF13956 Ibs_toxin: Toxin Ibs, 48.4 11 0.00024 21.0 1.1 15 1-15 2-16 (19)
54 COG0351 ThiD Hydroxymethylpyri 45.2 76 0.0017 31.5 7.2 105 24-159 119-226 (263)
55 TIGR01676 GLDHase galactonolac 45.2 13 0.00028 40.8 2.0 27 487-516 509-535 (541)
56 PF02601 Exonuc_VII_L: Exonucl 43.8 31 0.00067 35.1 4.5 58 42-106 18-87 (319)
57 COG4981 Enoyl reductase domain 42.0 43 0.00093 36.4 5.1 68 26-101 113-181 (717)
58 PRK11282 glcE glycolate oxidas 39.3 18 0.0004 37.5 2.0 20 494-513 324-344 (352)
59 PLN02465 L-galactono-1,4-lacto 36.1 25 0.00053 39.0 2.4 29 485-516 537-565 (573)
60 cd02875 GH18_chitobiase Chitob 35.1 96 0.0021 32.3 6.5 81 3-103 2-84 (358)
61 COG4359 Uncharacterized conser 33.7 43 0.00094 31.3 3.2 25 85-109 78-102 (220)
62 PRK00286 xseA exodeoxyribonucl 32.7 51 0.0011 35.3 4.1 57 42-105 139-203 (438)
63 COG1519 KdtA 3-deoxy-D-manno-o 28.6 2.9E+02 0.0063 29.4 8.6 34 72-105 260-293 (419)
64 cd07033 TPP_PYR_DXS_TK_like Py 26.8 92 0.002 28.0 4.2 29 74-102 125-153 (156)
65 KOG3282 Uncharacterized conser 25.4 1.3E+02 0.0027 28.1 4.6 37 64-102 118-154 (190)
66 PF02779 Transket_pyr: Transke 23.4 1.2E+02 0.0025 28.0 4.3 31 74-104 139-171 (178)
67 cd06568 GH20_SpHex_like A subg 23.0 76 0.0016 32.6 3.2 28 81-108 73-102 (329)
68 cd02742 GH20_hexosaminidase Be 22.8 77 0.0017 32.1 3.2 28 80-107 69-98 (303)
69 PF15608 PELOTA_1: PELOTA RNA 21.6 1.1E+02 0.0024 25.6 3.3 34 72-105 55-89 (100)
70 COG2144 Selenophosphate synthe 21.5 1.7E+02 0.0038 29.4 5.1 48 44-104 242-290 (324)
71 PRK04322 peptidyl-tRNA hydrola 21.4 1.8E+02 0.004 24.8 4.7 37 71-107 46-83 (113)
72 cd06565 GH20_GcnA-like Glycosy 20.9 89 0.0019 31.6 3.2 29 79-107 56-86 (301)
73 PF10740 DUF2529: Protein of u 20.7 2.2E+02 0.0047 26.4 5.2 111 22-139 23-149 (172)
74 PF00728 Glyco_hydro_20: Glyco 20.6 77 0.0017 32.5 2.7 30 79-108 69-100 (351)
75 cd06570 GH20_chitobiase-like_1 20.6 92 0.002 31.7 3.2 29 80-108 65-95 (311)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=4.6e-39 Score=341.61 Aligned_cols=200 Identities=20% Similarity=0.253 Sum_probs=173.1
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHH--hCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCC------e-EEcC
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSK--NHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRS------I-EINL 134 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~--~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~------i-~~d~ 134 (527)
.|.......|.+|++|+|++||+++|++|+ +++++|.+||+|||+.|.+... +|++|||++||+ + ++|.
T Consensus 56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~--~GivIdms~Ln~i~~~~~ii~vd~ 133 (525)
T PLN02441 56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP--GGVVVDMRSLRGGVRGPPVIVVSG 133 (525)
T ss_pred CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC--CeEEEECCCCCCcCccCceEEEcC
Confidence 577777789999999999999999999997 6799999999999999887653 489999999999 4 7899
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-ccc
Q 009727 135 EDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRA 213 (527)
Q Consensus 135 ~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~ 213 (527)
+..+|+|++|++|.||.+++.++|+. ....+.+..++|||.+++||.|..+.+||..+|+|+++|||++||++++ +..
T Consensus 134 ~~~~VtV~aG~~~~dv~~~l~~~Gla-P~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~~ 212 (525)
T PLN02441 134 DGPYVDVSGGELWIDVLKATLKHGLA-PRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSPT 212 (525)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHCCCc-cCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCCC
Confidence 99999999999999999999999852 1224666788999999999999999999999999999999999999998 667
Q ss_pred CChhhhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHH
Q 009727 214 MGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRW 267 (527)
Q Consensus 214 ~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (527)
+|+|||||++|| +|+|||||+++||++|+|+.+.++.+.+...+++.+.++.+
T Consensus 213 ~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~l 265 (525)
T PLN02441 213 QNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERL 265 (525)
T ss_pred CChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHH
Confidence 799999999998 89999999999999999997766666665444444444443
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=4.1e-34 Score=301.64 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=169.6
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEc
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQ 142 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 142 (527)
.|+....+.|.+|++|+|++||+++|++|+++++|+.++|+|||+.+.+.. ++++|||++||+| ++|+++++|+|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~---~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT---DGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC---CeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 377777889999999999999999999999999999999999999876542 3799999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhh
Q 009727 143 SGANLGELYYALAMKSLVHGFP-AGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFW 220 (527)
Q Consensus 143 ~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 220 (527)
||+++.+|.+.|.++|+. ++ .|.++.++|||.+++|++|. +..||..+|+|+++++|++||++++ +..+++||||
T Consensus 83 aG~~l~~L~~~L~~~Gl~--l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYS--MSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred CCCCHHHHHHHHHHcCCE--ecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 999999999999999964 44 57889999999999999996 6889999999999999999999998 5567899999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHHHh
Q 009727 221 AIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQYI 270 (527)
Q Consensus 221 a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (527)
+.+|+ .|+|||||++|||++|........ .. ....++++.|++.
T Consensus 160 a~~~~-~G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~ 203 (438)
T TIGR01678 160 AARVS-LGCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSH 203 (438)
T ss_pred HHhcC-CCceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHH
Confidence 99998 899999999999999987543321 11 2344566666654
No 3
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.8e-34 Score=306.08 Aligned_cols=198 Identities=20% Similarity=0.243 Sum_probs=171.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~ 147 (527)
....|.+|++|+|++||+++|++|+++++|+++||+||++.|.+... .++++|||++||+| ++|+++++|+||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~-~~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL-EKGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC-CCcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 34689999999999999999999999999999999999998765433 35899999999998 99999999999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEeec-----ccCChhhhhhh
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDR-----RAMGEDLFWAI 222 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~~-----~~~~~dL~~a~ 222 (527)
.+|.++|.++|+.++..+++...++|||++++++.|..+.+||...|+|+++|||++||++++. +..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 9999999999974443345556789999999999999999999999999999999999999982 13479999999
Q ss_pred hccCCCceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHH
Q 009727 223 RGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQ 268 (527)
Q Consensus 223 rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (527)
+|+ .|+|||||++|||++|.|+....+.+.|...+++.+++..+.
T Consensus 211 ~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 211 TGS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 999 899999999999999999977666677765555555555544
No 4
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=4.8e-33 Score=299.30 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=159.5
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEc-CCCCCCCCccccC-CCeEEEEcCCCCCe-EEcCCCCEEE
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRS-GGHDYEGLSYLCR-TPFIIIDLINMRSI-EINLEDETAW 140 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~g-gGh~~~g~s~~~~-~~gvvIdl~~~~~i-~~d~~~~~v~ 140 (527)
.|+....+.|.+|++|+|++||+++|++|+++++||.++| +||++.+.+...+ .++++|||++||+| ++|.++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 4999889999999999999999999999999999999996 5999887654332 23699999999995 9999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcccccC-CCCCccccccccccCcCCCcc-ccccccccceeEEEEEeeCC------eEee-c
Q 009727 141 VQSGANLGELYYALAMKSLVHGFPA-GLCPTVGIGGHLGGGGFGTLL-RKYGLAADQVVDAYLIDVNG------RILD-R 211 (527)
Q Consensus 141 v~~G~~~~~l~~~l~~~g~~~~~~~-g~~~~vgigG~~~ggg~g~~~-~~~G~~~D~v~~~~vV~~~G------~i~~-~ 211 (527)
|+||+++.+|.+.|.++|+ +++. +....++|||.+++|++|... +.||..+|+|++++||++|| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~Gl--al~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAGL--ALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcCC--EeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 9999999999999999985 4443 455678999999999999766 58899999999999999998 7777 5
Q ss_pred ccCChhhhhhhhccCCCceEEEEEEEEEEEecCceE
Q 009727 212 RAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETV 247 (527)
Q Consensus 212 ~~~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~ 247 (527)
..+++|||||+||| +|+|||||++|||++|.+...
T Consensus 181 ~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~~ 215 (557)
T TIGR01677 181 EGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKRS 215 (557)
T ss_pred CCCCHHHHHhhccC-CCccEeeeEEEEEEEccccce
Confidence 56789999999999 899999999999999987643
No 5
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=1.7e-32 Score=289.09 Aligned_cols=175 Identities=22% Similarity=0.357 Sum_probs=155.2
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEc
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQ 142 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 142 (527)
.|+....+.|.+|++|+|++||+++|++|++ |++++|+|||+.+.+. . ++++|||++||+| ++|+++++|+||
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~-~--~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC-T--DGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc-C--CCEEEEhhHcCCceeecCCCCEEEEc
Confidence 3887778899999999999999999999974 7999999999987653 2 3799999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhhh
Q 009727 143 SGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFWA 221 (527)
Q Consensus 143 ~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a 221 (527)
||+++.||.+.|.++|+.+.. .|.+..++|||.+++|++|.. ..||..+|+|+++|||++||++++ +..+++|||||
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 999999999999999964432 355566889999999999974 689999999999999999999998 56678999999
Q ss_pred hhccCCCceEEEEEEEEEEEecCceE
Q 009727 222 IRGGGGSSFGIILSWKIKLVRVPETV 247 (527)
Q Consensus 222 ~rG~~~g~~GIVt~~~lkl~p~~~~~ 247 (527)
+||| +|+|||||++|||++|.+...
T Consensus 155 ~~g~-~G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVS-LGALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhC-CCceEEEEEEEEEeecceEeE
Confidence 9999 899999999999999987643
No 6
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.2e-32 Score=295.29 Aligned_cols=185 Identities=29% Similarity=0.369 Sum_probs=164.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~ 147 (527)
....|.+|+.|+|++||+++|++|+++++||++||+||++.|.+... ++++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~--~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD--GGVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC--CcEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34688999999999999999999999999999999999999887654 3899999999999 89999999999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee--c----ccCChhhhhh
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD--R----RAMGEDLFWA 221 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~--~----~~~~~dL~~a 221 (527)
.+|.++|.++|+.+++.+++...++|||+++++++|..+.+||..+|+|+++++|++||++++ . +.++.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999997554444555589999999999999999999999999999999999999997 2 3456899999
Q ss_pred hhccCCCceEEEEEEEEEEEecCceEEEEEEEecc
Q 009727 222 IRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTL 256 (527)
Q Consensus 222 ~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~ 256 (527)
+.|+ .|+|||||++++|++|.|+........+..
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~~ 219 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFPS 219 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCCC
Confidence 9998 899999999999999998866555444443
No 7
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=4e-33 Score=300.55 Aligned_cols=194 Identities=23% Similarity=0.294 Sum_probs=171.4
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHH
Q 009727 71 PKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGE 149 (527)
Q Consensus 71 ~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~ 149 (527)
..|.+|++|+|++||+++|++|+++++|++++|||||+.|.+... .++++|||++||+| ++|+++++|+||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~-~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAP-HGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCC-CCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 479999999999999999999999999999999999999876543 45899999999998 7999999999999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEeec------ccCChhhhhhhh
Q 009727 150 LYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDR------RAMGEDLFWAIR 223 (527)
Q Consensus 150 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~~------~~~~~dL~~a~r 223 (527)
|+++|.++|+ .+|...++.++|||.++++++|..+.+||.++|+|+++|||++||++++. ...++||+|+++
T Consensus 211 L~~~L~~~Gl--~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcCC--EeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 9999999985 46655567789999999999999999999999999999999999999961 135689999999
Q ss_pred ccCCCceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHH
Q 009727 224 GGGGSSFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQ 268 (527)
Q Consensus 224 G~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (527)
|+ +|+|||||+++||++|.|+......+.|...+++.+++..+.
T Consensus 289 Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 289 GS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred cC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 98 899999999999999999977777777775555665555443
No 8
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.98 E-value=1.9e-31 Score=283.17 Aligned_cols=177 Identities=19% Similarity=0.247 Sum_probs=161.8
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEc
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQ 142 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 142 (527)
+|+....+.|..+++|+|++||+++|++|++++++|+++|+|||+.+.+... +.+|||++||+| ++|+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5999888999999999999999999999999999999999999999876543 457999999998 999999999999
Q ss_pred CCCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhh
Q 009727 143 SGANLGELYYALAMKSLVHGFP-AGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFW 220 (527)
Q Consensus 143 ~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 220 (527)
||+++.||.+.|.++|+ +++ .|.+..++|||.+++|+||... .||..+|+|++++||++||++++ +..+++||||
T Consensus 130 AG~~l~~L~~~L~~~Gl--al~n~gsi~~~TIGGaiatgtHGtg~-~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGI--TLQNFASIREQQIGGIIQVGAHGTGA-KLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcCC--EeccCCCCCCceEccccccCCcCCCC-CCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 99999999999999995 444 4788899999999999999854 79999999999999999999998 5567899999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCceE
Q 009727 221 AIRGGGGSSFGIILSWKIKLVRVPETV 247 (527)
Q Consensus 221 a~rG~~~g~~GIVt~~~lkl~p~~~~~ 247 (527)
|.||| .|+|||||++|||+.|.+...
T Consensus 207 Aargs-lG~LGVItevTLr~~Pa~~l~ 232 (541)
T TIGR01676 207 LARCG-LGGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred HHhcC-CCceEeEEEEEEEEEecccee
Confidence 99998 899999999999999998743
No 9
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=9.7e-31 Score=262.26 Aligned_cols=175 Identities=22% Similarity=0.355 Sum_probs=152.5
Q ss_pred CCCCCccEEEecCCHHHHHHHHHHHHhC--CCcEEEEcCCCCCCCCccccCCCeEEEEcC---CCCCe-EEcCCCCEEEE
Q 009727 68 ATTPKPLLIITPFHESEIQAAVFCSKNH--DLQIRVRSGGHDYEGLSYLCRTPFIIIDLI---NMRSI-EINLEDETAWV 141 (527)
Q Consensus 68 ~~~~~p~~vv~P~s~~dV~~~v~~a~~~--~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~---~~~~i-~~d~~~~~v~v 141 (527)
..+..|.+|+.|+|+|||++++|.|+.. .+||++||+|||..|.+... .+|++|.|+ .|+++ .+..++..|.|
T Consensus 59 ~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~-~~GvvV~m~~~~~~~~~~~~~~~~~yvdV 137 (505)
T KOG1231|consen 59 RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT-RGGVVVCMDSSLLMKDVPVLVVDDLYVDV 137 (505)
T ss_pred cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC-CCCeEEEEehhhccCCCceeecccceEEe
Confidence 4557999999999999999999999999 89999999999999998753 357665553 46666 56777799999
Q ss_pred cCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhh
Q 009727 142 QSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFW 220 (527)
Q Consensus 142 ~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 220 (527)
.||..|-||.+++.++|+.-..+.-.-+ .+|||.++.+|+|..+.+||...+||++++||+++|++++ +...|++||+
T Consensus 138 ~~g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~ 216 (505)
T KOG1231|consen 138 SAGTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFF 216 (505)
T ss_pred eCChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeee
Confidence 9999999999999999962122222223 8899999999999999999999999999999999999998 6678999999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCc
Q 009727 221 AIRGGGGSSFGIILSWKIKLVRVPE 245 (527)
Q Consensus 221 a~rG~~~g~~GIVt~~~lkl~p~~~ 245 (527)
++.|| .|+|||||+++++|+|+|.
T Consensus 217 ~vlGg-lGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 217 LVLGG-LGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeecc-CcceeeEEEEEEEeccCCc
Confidence 99999 9999999999999999994
No 10
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=1.5e-30 Score=274.51 Aligned_cols=191 Identities=23% Similarity=0.257 Sum_probs=166.0
Q ss_pred EEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHHH
Q 009727 76 IITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYYAL 154 (527)
Q Consensus 76 vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l 154 (527)
|++|+|++||+++|++|+++++|++++|+|||+.|.+... .++++|||++||+| ++|+++++++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~-~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPE-EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCC-CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 5789999999999999999999999999999998766543 35899999999998 999999999999999999999999
Q ss_pred HHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEeec------ccCChhhhhhhhccCCC
Q 009727 155 AMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDR------RAMGEDLFWAIRGGGGS 228 (527)
Q Consensus 155 ~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~~------~~~~~dL~~a~rG~~~g 228 (527)
.++|+.+++.+++...++|||.+++++.|..+.+||.+.|+|+++|||++||++++. ...++||++.+.|+ .|
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs-~G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS-EG 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-Cc
Confidence 999975444455556788999999999999999999999999999999999999972 33568999999998 89
Q ss_pred ceEEEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHH
Q 009727 229 SFGIILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQ 268 (527)
Q Consensus 229 ~~GIVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (527)
+|||||+++||++|.|+....+.+.|...+++.+++..+.
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999977666667766556666655544
No 11
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=7.5e-30 Score=260.43 Aligned_cols=182 Identities=21% Similarity=0.290 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEcCCC-CCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHHHHHcC
Q 009727 81 HESEIQAAVFCSKNHDLQIRVRSGGH-DYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYYALAMKS 158 (527)
Q Consensus 81 s~~dV~~~v~~a~~~~~~~~v~ggGh-~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g 158 (527)
.++||+++|++|+++++|+.++|||| ++.|.+. .+++|||++||+| ++|+++.+|+|++|+++.||.++|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~----~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL----AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC----CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 4556532 2579999999998 9999999999999999999999999999
Q ss_pred CcccccC-CCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEeec------ccCChhhhhhhhccCCCceE
Q 009727 159 LVHGFPA-GLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILDR------RAMGEDLFWAIRGGGGSSFG 231 (527)
Q Consensus 159 ~~~~~~~-g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~~------~~~~~dL~~a~rG~~~g~~G 231 (527)
+.+++.+ ..+..++|||++++|++|..+.+||..+|+|+++++|++||++++. +.+++||||+++|+ .|+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cchhh
Confidence 7666543 3455689999999999999999999999999999999999999972 33578999999999 89999
Q ss_pred EEEEEEEEEEecCceEEEEEEEecchhhHHHHHHHHH
Q 009727 232 IILSWKIKLVRVPETVTSFTVLKTLEQGALELVHRWQ 268 (527)
Q Consensus 232 IVt~~~lkl~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (527)
|||+++||++|.|+....+.+.+. ..++.+.+..+.
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999999986555444433 233444444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=7e-28 Score=257.97 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=158.5
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEc
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQ 142 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~ 142 (527)
+|+....+.|.+++.|+|++||+++|++|+++++||.++|+|||+.+.+... +.+|||++|++| ++|+++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 5999889999999999999999999999999999999999999998776433 457999999997 999999999999
Q ss_pred CCCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhh
Q 009727 143 SGANLGELYYALAMKSLVHGFP-AGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFW 220 (527)
Q Consensus 143 ~G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~ 220 (527)
+|+++.+|.+.|.++|+ +++ .|.....+|||.+++|+||... .+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~GL--al~n~g~I~~~TIGGaIstGtHGtG~-~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHGL--TLQNYASIREQQIGGFIQVGAHGTGA-RIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcCC--EeccCCCCCCeeecchhhCCCCCcCC-CcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 99999999999999995 444 3566678999999999999865 68999999999999999999888 5566799999
Q ss_pred hhhccCCCceEEEEEEEEEEEecCce
Q 009727 221 AIRGGGGSSFGIILSWKIKLVRVPET 246 (527)
Q Consensus 221 a~rG~~~g~~GIVt~~~lkl~p~~~~ 246 (527)
+.|++ .|.|||||++|||+.|.+..
T Consensus 242 aar~g-lG~lGVIteVTLql~P~~~L 266 (573)
T PLN02465 242 LARCG-LGGLGVVAEVTLQCVPAHRL 266 (573)
T ss_pred Hhhcc-CCCCcEEEEEEEEEEecCce
Confidence 99998 89999999999999999864
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.9e-27 Score=210.89 Aligned_cols=136 Identities=33% Similarity=0.544 Sum_probs=125.5
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCC-eEEcCCCCEEEEcCCCCHHHHH
Q 009727 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRS-IEINLEDETAWVQSGANLGELY 151 (527)
Q Consensus 73 p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~-i~~d~~~~~v~v~~G~~~~~l~ 151 (527)
|.+|++|+|++||+++|++|+++++|+.++|+||++.+.+. ..++++|||++|++ +++|++.++++|+||++|.||+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~--~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS--DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS--STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc--cCCcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 78999999999999999999999999999999999997754 24589999999999 4999999999999999999999
Q ss_pred HHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee
Q 009727 152 YALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD 210 (527)
Q Consensus 152 ~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~ 210 (527)
++|.++|+.+.+.++.+..++|||++++|++|..++.||..+|+|+++|+|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999987555557888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=5.1e-25 Score=222.12 Aligned_cols=164 Identities=23% Similarity=0.201 Sum_probs=143.1
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCC-CCCeEEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLIN-MRSIEINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~~G~~~ 147 (527)
....|.+++.|+|++||++++++|+++++|+.++|+|||+... +.+.++++|||++ |+.|++ ++.+++|+||++|
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~--d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~ 102 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVR--DGGIRGVVIRLGKGLNEIEV--EGNRITAGAGAPL 102 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEec--CCCcceEEEEecCCcceEEe--cCCEEEEECCCcH
Confidence 3467999999999999999999999999999999999997643 2333589999998 998854 4568999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccc-ccccceeEEEEEeeCCeEeecccCChhhhhhhhccC
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYG-LAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGG 226 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 226 (527)
.+|.++|.++|+ .|.+..++++| +.||+.+++++.|| ..+|+|+++++|++||++++.. +.|++|+||++.
T Consensus 103 ~~L~~~l~~~Gl-----~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~--~~e~~~~yR~s~ 174 (298)
T PRK13905 103 IKLARFAAEAGL-----SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLS--NEELGFGYRHSA 174 (298)
T ss_pred HHHHHHHHHcCC-----CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEE--HHHcCCcCcccc
Confidence 999999999985 57888899998 67999999999998 6899999999999999999843 369999999985
Q ss_pred CC-ceEEEEEEEEEEEecC
Q 009727 227 GS-SFGIILSWKIKLVRVP 244 (527)
Q Consensus 227 ~g-~~GIVt~~~lkl~p~~ 244 (527)
.+ .+||||+++||++|..
T Consensus 175 ~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 175 LQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 44 3899999999999974
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.92 E-value=1.2e-24 Score=227.93 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=167.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCC----CeEEEEcCCCCCe-EEcCCCCEEEEcCC
Q 009727 70 TPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRT----PFIIIDLINMRSI-EINLEDETAWVQSG 144 (527)
Q Consensus 70 ~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~----~gvvIdl~~~~~i-~~d~~~~~v~v~~G 144 (527)
...|.+||+|+|++||+++|++|+++++||++||||+++.|.+++.+. ++|+|||++||+| ++| ++..++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 457999999999999999999999999999999999999988876432 3799999999999 888 5678999999
Q ss_pred CCHHHHHHHHHHcCCcccc-cCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeE-------ee----c-
Q 009727 145 ANLGELYYALAMKSLVHGF-PAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRI-------LD----R- 211 (527)
Q Consensus 145 ~~~~~l~~~l~~~g~~~~~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i-------~~----~- 211 (527)
+++.+|.++|.++|+.... ++.+|-.++|||.++.++-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 9999999999999963222 12333345788999999999999999999999999 999999999 32 1
Q ss_pred ------ccCCh----------------------------------hhhhhh--hccCCCceEEEEEEEEEEEecCceEEE
Q 009727 212 ------RAMGE----------------------------------DLFWAI--RGGGGSSFGIILSWKIKLVRVPETVTS 249 (527)
Q Consensus 212 ------~~~~~----------------------------------dL~~a~--rG~~~g~~GIVt~~~lkl~p~~~~~~~ 249 (527)
+..+. |+...+ .|+ .|.+||| +++++++|+|+....
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceE
Confidence 11233 777777 788 8999999 999999999999999
Q ss_pred EEEEecchhhHHHHHHHHHHhcccCCC
Q 009727 250 FTVLKTLEQGALELVHRWQYIAPKFHE 276 (527)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (527)
|.+.++..+.+.++...+......+|.
T Consensus 272 f~ig~n~~~~~~~~rr~il~~~~~lP~ 298 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHILANFKNLPV 298 (564)
T ss_pred EEEeCCCHHHHHHHHHHHHHhCCCCce
Confidence 999988777777766665543344443
No 16
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.89 E-value=5.2e-23 Score=201.99 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=172.3
Q ss_pred ccCcCccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCE
Q 009727 60 VQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDET 138 (527)
Q Consensus 60 ~~n~r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~ 138 (527)
.+|..|..........|.+|+|+++|++++++|+++++.|+|.||-++..|.|+ +-.+.|||+|.+||+| ++|+-.++
T Consensus 77 ~~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSV-PvfDEiVlsl~~mNKi~sfDevsGi 155 (511)
T KOG1232|consen 77 NFNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSV-PVFDEIVLSLGLMNKILSFDEVSGI 155 (511)
T ss_pred hhhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcc-cchHHHhhhhhhhccccccccccce
Confidence 356778887778899999999999999999999999999999999999888876 4456899999999999 89999999
Q ss_pred EEEcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee------cc
Q 009727 139 AWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD------RR 212 (527)
Q Consensus 139 v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~------~~ 212 (527)
+++++|+.+.++..+|+++|+.+++.-|.-.++-|||.+++.+-|..--+||...-+|+++|+|+|+|+++. ++
T Consensus 156 l~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKD 235 (511)
T KOG1232|consen 156 LKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKD 235 (511)
T ss_pred EEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhccc
Confidence 999999999999999999998777777888889999999999999999999999999999999999999986 45
Q ss_pred cCChhhhhhhhccCCCceEEEEEEEEEEEecCceEEE
Q 009727 213 AMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTS 249 (527)
Q Consensus 213 ~~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~ 249 (527)
.++.|+-..+.|+ .|++||||++++-+.|.|..+..
T Consensus 236 NTgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 236 NTGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred CccccchhheecC-CceeeEEeeEEEeecCCCcceeE
Confidence 6789999999999 89999999999999999986543
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=5.4e-22 Score=199.50 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=137.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCC-CCCeEEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLIN-MRSIEINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~~G~~~ 147 (527)
....|.+++.|+|++||++++++|+++++|+.++|||||.... +.+.++++|+|++ ++.+..+ +.+++||||+.|
T Consensus 32 igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~--d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~ 107 (302)
T PRK14652 32 VGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVA--DAGVRGVVLRLPQDFPGESTD--GGRLVLGAGAPI 107 (302)
T ss_pred cCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeec--CCCEeeEEEEecCCcceEEec--CCEEEEECCCcH
Confidence 4568999999999999999999999999999999999998633 2334589999976 5556543 469999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccc-cccccccceeEEEEEeeCCeEeecccCChhhhhhhhccC
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLR-KYGLAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGG 226 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~-~~G~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 226 (527)
.+|.+++.++|+ .|.++.+||+| +.||+..++++ ++|.++|+|+++++|+++| .++.. ..|+.|+||++.
T Consensus 108 ~~L~~~~~~~GL-----~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~ 178 (302)
T PRK14652 108 SRLPARAHAHGL-----VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCR 178 (302)
T ss_pred HHHHHHHHHcCC-----cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceec
Confidence 999999999996 58999999999 77999999986 6667899999999999999 44422 379999999864
Q ss_pred CCceEEEEEEEEEEEecC
Q 009727 227 GSSFGIILSWKIKLVRVP 244 (527)
Q Consensus 227 ~g~~GIVt~~~lkl~p~~ 244 (527)
.+..||||+++||++|..
T Consensus 179 ~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 179 LPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cCCCeEEEEEEEEEecCC
Confidence 333489999999999854
No 18
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=3.8e-22 Score=200.71 Aligned_cols=182 Identities=22% Similarity=0.276 Sum_probs=158.5
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcC
Q 009727 65 YLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQS 143 (527)
Q Consensus 65 ~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~ 143 (527)
|..+..++.+-|-+|+|++|+.++|+.|+++|.++++.|.||+..+..+.. |.+|++++||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 455556788889999999999999999999999999999999999886543 699999999998 9999999999999
Q ss_pred CCCHHHHHHHHHHcCCccccc-CCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-cccCChhhhhh
Q 009727 144 GANLGELYYALAMKSLVHGFP-AGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-RRAMGEDLFWA 221 (527)
Q Consensus 144 G~~~~~l~~~l~~~g~~~~~~-~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-~~~~~~dL~~a 221 (527)
|+++.||.+++++.|+ ++| .++-...+|||++..|.||.....|+......+-..++.++|.++. ++...||+|.|
T Consensus 119 GirlrQLie~~~~~Gl--sL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLGL--SLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred CcCHHHHHHHHHhcCc--cccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 9999999999999884 555 4777888999999999999888767777777777777788998776 66678999999
Q ss_pred hhccCCCceEEEEEEEEEEEecCceEEEEEE
Q 009727 222 IRGGGGSSFGIILSWKIKLVRVPETVTSFTV 252 (527)
Q Consensus 222 ~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~ 252 (527)
.+-+ .|.+|||.++||++.|.-+....+.+
T Consensus 197 AkvS-LG~LGVIs~VTl~~vp~Fk~s~t~~v 226 (518)
T KOG4730|consen 197 AKVS-LGVLGVISQVTLSVVPAFKRSLTYVV 226 (518)
T ss_pred hhhc-ccceeEEEEEEEEEEecceeeeEEEE
Confidence 9999 89999999999999998876554443
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.88 E-value=4.7e-22 Score=198.72 Aligned_cols=163 Identities=21% Similarity=0.183 Sum_probs=141.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLG 148 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 148 (527)
....|.++++|+|++||++++++|+++++|+.++|||||+.... ...++++|++++|+.+.+++ +.+++|+||+.|.
T Consensus 9 igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d--~~~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~ 85 (284)
T TIGR00179 9 IGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILD--DGRGGVIINLGKGIDIEDDE-GEYVHVGGGENWH 85 (284)
T ss_pred cCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEcc--CCcCeEEEECCCCceEEEec-CCEEEEEcCCcHH
Confidence 34679999999999999999999999999999999999988663 34468999999999887766 5799999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccccccc-ceeEEEEEeeCCeEeecccCChhhhhhhhccCC
Q 009727 149 ELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAAD-QVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGG 227 (527)
Q Consensus 149 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D-~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 227 (527)
+|.+++.++|+ .|.+..+|++| +.||+.+++++.||..++ .|+++++|++||++++... .|+.|+||-+..
T Consensus 86 ~l~~~~~~~Gl-----~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f 157 (284)
T TIGR00179 86 KLVKYALKNGL-----SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIF 157 (284)
T ss_pred HHHHHHHHCCC-----cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCcccc
Confidence 99999999986 69999999999 689999999999999874 7899999999999987433 799999996533
Q ss_pred Cc-e-EEEEEEEEEEEe
Q 009727 228 SS-F-GIILSWKIKLVR 242 (527)
Q Consensus 228 g~-~-GIVt~~~lkl~p 242 (527)
-. . .||++++|++.+
T Consensus 158 ~~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 158 QHKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCCcEEEEEEEEEecc
Confidence 21 1 599999999843
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=5.1e-22 Score=200.10 Aligned_cols=163 Identities=19% Similarity=0.199 Sum_probs=139.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLG 148 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 148 (527)
....|.+++.|+|++||++++++|+++++|+.++|+|||+... +.+.++++|+|++|++|+++ +.+++|++|+.|.
T Consensus 33 igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~--d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~ 108 (305)
T PRK12436 33 VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIK--DGGIRGITVSLIHITGVTVT--GTTIVAQCGAAII 108 (305)
T ss_pred cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEe--CCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCcHH
Confidence 4567999999999999999999999999999999999998733 33345899999889998776 4589999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccc-ccccceeEEEEEeeCCeEeecccCChhhhhhhhccCC
Q 009727 149 ELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYG-LAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGG 227 (527)
Q Consensus 149 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 227 (527)
+|.+++.++|+ .|.+..+|++|. .||+.+++++.|| ...|.+.+++|+++||++++... .|+.|+||.+..
T Consensus 109 ~L~~~~~~~gl-----~Gle~~~giPGt-VGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~~ 180 (305)
T PRK12436 109 DVSRIALDHNL-----TGLEFACGIPGS-VGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSVF 180 (305)
T ss_pred HHHHHHHHcCC-----ccchhhcCCccc-hhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCcC
Confidence 99999999986 577777888884 5888888999999 55688889999999999998433 799999997744
Q ss_pred C-ceEEEEEEEEEEEec
Q 009727 228 S-SFGIILSWKIKLVRV 243 (527)
Q Consensus 228 g-~~GIVt~~~lkl~p~ 243 (527)
. ...||++++||+.+.
T Consensus 181 ~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 181 ANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCEEEEEEEEEEcCC
Confidence 3 246999999999875
No 21
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=1.2e-21 Score=197.39 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=140.8
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHHH
Q 009727 70 TPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGE 149 (527)
Q Consensus 70 ~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~~ 149 (527)
...+.+++.|+|++||++++++|+++++|+.++|+|||.... +.+.+|++|++++|++|+++. .+++||||+.|.+
T Consensus 34 GG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~--d~g~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~ 109 (307)
T PRK13906 34 GGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR--EGGIRGIVISLLSLDHIEVSD--DAIIAGSGAAIID 109 (307)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeec--CCCcceEEEEecCccceEEeC--CEEEEECCCcHHH
Confidence 357899999999999999999999999999999999998743 334458999998999998764 4899999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccc-ccccceeEEEEEeeCCeEeecccCChhhhhhhhccCCC
Q 009727 150 LYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYG-LAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGS 228 (527)
Q Consensus 150 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~g 228 (527)
|.+++.++|+ .|.+..+||+| +.||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+..-
T Consensus 110 l~~~~~~~Gl-----~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~ 181 (307)
T PRK13906 110 VSRVARDYAL-----TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQ 181 (307)
T ss_pred HHHHHHHcCC-----ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCC
Confidence 9999999986 68888999999 78999999999996 78999999999999999997433 7999999966332
Q ss_pred c-eEEEEEEEEEEEec
Q 009727 229 S-FGIILSWKIKLVRV 243 (527)
Q Consensus 229 ~-~GIVt~~~lkl~p~ 243 (527)
. --||++++|++.|.
T Consensus 182 ~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 182 KEHLVVLEAAFTLAPG 197 (307)
T ss_pred CCCEEEEEEEEEECCC
Confidence 2 24999999999873
No 22
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.86 E-value=5.9e-21 Score=187.78 Aligned_cols=191 Identities=22% Similarity=0.220 Sum_probs=161.9
Q ss_pred ccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccc-CC-Ce-EEEEcCCCCCe-EEcCCCCEEE
Q 009727 65 YLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLC-RT-PF-IIIDLINMRSI-EINLEDETAW 140 (527)
Q Consensus 65 ~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~-~~-~g-vvIdl~~~~~i-~~d~~~~~v~ 140 (527)
|....+..|+.||.|++.+||.++|+.|.+|++-+.+.|||++..+.-.++ +. +. +.+|++.||+| .+|.++-++.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 455667899999999999999999999999999999999999977443333 32 23 33788999998 8999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeEEEEEeeCCeEee-----cccCC
Q 009727 141 VQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVDAYLIDVNGRILD-----RRAMG 215 (527)
Q Consensus 141 v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~~~vV~~~G~i~~-----~~~~~ 215 (527)
+++|+.-.+|.+.|.+.|+...-.+.+....++||+++..+.|+.-..||.+-|-|+-+++|++.|.+.+ +-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999986433333444456899999999999999999999999999999999998875 23568
Q ss_pred hhhhhhhhccCCCceEEEEEEEEEEEecCceEEEEEEEecc
Q 009727 216 EDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTVLKTL 256 (527)
Q Consensus 216 ~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~~~~~ 256 (527)
||+-.-+.|+ .|++||||++++|+.|+|+....-.+.|+.
T Consensus 313 PDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPN 352 (613)
T KOG1233|consen 313 PDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPN 352 (613)
T ss_pred CCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCc
Confidence 9999999998 899999999999999999866555555654
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.85 E-value=1e-20 Score=193.50 Aligned_cols=165 Identities=18% Similarity=0.142 Sum_probs=142.8
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLG 148 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 148 (527)
....+.+++.|+|++||++++++|+++++|+.++|+|||.... +.+.+|+||+++ ++.++++.+..+++|++|+.|.
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~--D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~ 105 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIA--DDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWD 105 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeEC--CCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHH
Confidence 4567999999999999999999999999999999999998743 344568999998 5888887667799999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccccc-ccceeEEEEEeeC-CeEeecccCChhhhhhhhccC
Q 009727 149 ELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLA-ADQVVDAYLIDVN-GRILDRRAMGEDLFWAIRGGG 226 (527)
Q Consensus 149 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~-~D~v~~~~vV~~~-G~i~~~~~~~~dL~~a~rG~~ 226 (527)
+|.+++.++|+ .|.+..+||+|.+ ||+.-++.+.||.. .|.|.++++++.+ |++++.. +.||+|+||++.
T Consensus 106 ~l~~~a~~~GL-----~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~ 177 (363)
T PRK13903 106 DVVARTVEAGL-----GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSV 177 (363)
T ss_pred HHHHHHHHcCC-----ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceeccccc
Confidence 99999999996 8999999999965 88888888889964 7999999999965 9998743 489999999863
Q ss_pred C--CceEEEEEEEEEEEecC
Q 009727 227 G--SSFGIILSWKIKLVRVP 244 (527)
Q Consensus 227 ~--g~~GIVt~~~lkl~p~~ 244 (527)
. ++++|||+++||+.|..
T Consensus 178 f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 178 LKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred cCCCCCEEEEEEEEEEEcCC
Confidence 2 24789999999999863
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=1.7e-19 Score=180.99 Aligned_cols=166 Identities=19% Similarity=0.206 Sum_probs=136.9
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCC-CeEEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMR-SIEINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~-~i~~d~~~~~v~v~~G~~~ 147 (527)
......+++.|+|++|+++++++|+++++|+.++|+|||+... +.+.+|++|++++++ ++..+.+..+++|++|+.|
T Consensus 17 iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~--d~g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~ 94 (295)
T PRK14649 17 IGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVR--DEGFDGLVARYRGQRWELHEHGDTAEVWVEAGAPM 94 (295)
T ss_pred eCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEe--CCCcCeEEEEecCCCcEEEEeCCcEEEEEEcCCcH
Confidence 4467889999999999999999999999999999999999866 344569999998754 6666655558999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccc-ccccceeEEEEEeeCCeEeecccCChhhhhhhhccC
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYG-LAADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGG 226 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G-~~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 226 (527)
.+|.+++.++|+ .|.++.+||+| +.||+.-++.+.|| .++|.|.++++++.+|++++... .||+|+||-+.
T Consensus 95 ~~l~~~~~~~GL-----~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S~ 166 (295)
T PRK14649 95 AGTARRLAAQGW-----AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTSV 166 (295)
T ss_pred HHHHHHHHHcCC-----ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccceee
Confidence 999999999996 88999999999 55664444555555 67899999999999999987433 69999999763
Q ss_pred CCce---------EEEEEEEEEEEecC
Q 009727 227 GSSF---------GIILSWKIKLVRVP 244 (527)
Q Consensus 227 ~g~~---------GIVt~~~lkl~p~~ 244 (527)
.-.. -||++++|++.|..
T Consensus 167 ~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 167 LKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred cccccccccccCCeEEEEEEEEECCCC
Confidence 3221 29999999998753
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=5.1e-18 Score=169.74 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=139.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLG 148 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 148 (527)
......+++.|+|.+|+++++++|++ ++|+.+.|+|+|.... +.+.++++|.+++|+.++++. ..++|+||+.|.
T Consensus 30 iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~--d~g~~gvVI~l~~~~~i~i~~--~~v~v~AG~~l~ 104 (297)
T PRK14653 30 IGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPK--DEPMDFVVVSTERLDDIFVDN--DKIICESGLSLK 104 (297)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEe--cCCccEEEEEeCCcCceEEeC--CEEEEeCCCcHH
Confidence 44577889999999999999999999 9999999999998866 344569999997899998863 589999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEEeeCCeEeecccCChhhhhhhhccCC
Q 009727 149 ELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGG 227 (527)
Q Consensus 149 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 227 (527)
+|..++.++|+ .|.+..+||+|. .||+.-++++.||. +.|.|.++++++ +|++++.. ..|+.|.||-+..
T Consensus 105 ~L~~~~~~~GL-----~GlE~l~gIPGT-VGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~--~~e~~f~YR~S~~ 175 (297)
T PRK14653 105 KLCLVAAKNGL-----SGFENAYGIPGS-VGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLG--KNEIKFSYRNSIF 175 (297)
T ss_pred HHHHHHHHCCC-----cchhhhcCCchh-HHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEc--hhhccccCccccC
Confidence 99999999996 899999999995 69999999999998 789999999999 78877643 3699999996533
Q ss_pred Cc--eEEEEEEEEEEEecC
Q 009727 228 SS--FGIILSWKIKLVRVP 244 (527)
Q Consensus 228 g~--~GIVt~~~lkl~p~~ 244 (527)
.. --|||+++||+.|..
T Consensus 176 ~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 176 KEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCCCcEEEEEEEEEEecCC
Confidence 22 129999999999853
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.1e-16 Score=157.14 Aligned_cols=165 Identities=24% Similarity=0.238 Sum_probs=145.5
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLG 148 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~ 148 (527)
.......++.|++.+|+.++++++.+.++|+.+.|+|+|..-. +.+.++++|.+.+++.++++.+...+++++|+.|.
T Consensus 17 iGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~--d~g~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~ 94 (291)
T COG0812 17 IGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVR--DGGIGGVVIKLGKLNFIEIEGDDGLIEAGAGAPWH 94 (291)
T ss_pred cCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEe--cCCCceEEEEcccccceeeeccCCeEEEccCCcHH
Confidence 4567889999999999999999999999999999999997755 45567899999999999888887799999999999
Q ss_pred HHHHHHHHcCCcccccCCCCCccccccccccCcCCCcccccccc-ccceeEEEEEeeCCeEeecccCChhhhhhhhccCC
Q 009727 149 ELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLA-ADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGG 227 (527)
Q Consensus 149 ~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~-~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~ 227 (527)
+|.+++.++|+ .|.+..+||+| +.||+.-|+.+.||.- .|.+.++++++.+|++.+.. +.||-|+||-+..
T Consensus 95 ~l~~~~~~~gl-----~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~--~~el~f~YR~S~f 166 (291)
T COG0812 95 DLVRFALENGL-----SGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLS--AEELGFGYRTSPF 166 (291)
T ss_pred HHHHHHHHcCC-----cchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEE--HHHhCcccccCcC
Confidence 99999999986 89999999999 5588999999999974 69999999999999999743 3799999996533
Q ss_pred Cce-EEEEEEEEEEEec
Q 009727 228 SSF-GIILSWKIKLVRV 243 (527)
Q Consensus 228 g~~-GIVt~~~lkl~p~ 243 (527)
..- .||++++||+.|-
T Consensus 167 ~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 167 KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCCEEEEEEEEEeCCC
Confidence 322 8999999999986
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1.3e-16 Score=159.08 Aligned_cols=164 Identities=18% Similarity=0.164 Sum_probs=140.0
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccC-CCeEEEEcCCCCCeEEcCCCCEEEEcCCCCH
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCR-TPFIIIDLINMRSIEINLEDETAWVQSGANL 147 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~-~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~ 147 (527)
......+++.|+|.+|+++++++++++++|+.+.|+|+|.... +.+ .++++|.+.+|+.++++. ..++|++|+.|
T Consensus 29 iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~--D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~~~ 104 (302)
T PRK14650 29 IGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILIN--DEEEIDFPIIYTGHLNKIEIHD--NQIVAECGTNF 104 (302)
T ss_pred eCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEE--CCCccceEEEEECCcCcEEEeC--CEEEEEeCCcH
Confidence 4457788999999999999999999999999999999998755 344 568999887799998764 46999999999
Q ss_pred HHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEEeeCCeEeecccCChhhhhhhhccC
Q 009727 148 GELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGG 226 (527)
Q Consensus 148 ~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~ 226 (527)
.+|..++.++|+ .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+|++++.. ..|+.|+||-+.
T Consensus 105 ~~l~~~~~~~gl-----~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~--~~e~~f~YR~S~ 176 (302)
T PRK14650 105 EDLCKFALQNEL-----SGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKK--FKKEEFKYKISP 176 (302)
T ss_pred HHHHHHHHHcCC-----chhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEE--HHHcCccccccc
Confidence 999999999996 89999999999 558888899999995 579999999999999988743 379999999653
Q ss_pred CCc-eEEEEEEEEEEEecC
Q 009727 227 GSS-FGIILSWKIKLVRVP 244 (527)
Q Consensus 227 ~g~-~GIVt~~~lkl~p~~ 244 (527)
.-. -.||++++|++.|..
T Consensus 177 f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 177 FQNKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCCCEEEEEEEEEEcCCC
Confidence 221 159999999998864
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.68 E-value=1.7e-16 Score=160.67 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=138.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEc-CCC--CEEEEcCCC
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEIN-LED--ETAWVQSGA 145 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d-~~~--~~v~v~~G~ 145 (527)
..-...+++.|+|++|+++++++|+++++|+.+.|+|+|.... + +.+|++|.+ ++++++++ .+. ..+++++|+
T Consensus 17 iGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~--D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 17 IDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFT--E-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred cCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEEC--C-CCCEEEEEe-cCCceEEEecCCCeEEEEEEcCC
Confidence 3457788999999999999999999999999999999998865 3 467899988 49999873 222 279999999
Q ss_pred CHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEEeeC-CeEeecccCChhhhhhhh
Q 009727 146 NLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLIDVN-GRILDRRAMGEDLFWAIR 223 (527)
Q Consensus 146 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV~~~-G~i~~~~~~~~dL~~a~r 223 (527)
.|.+|.+++.++|+ .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++.+ |++++... .|+.|+||
T Consensus 93 ~~~~l~~~~~~~gl-----~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~YR 164 (334)
T PRK00046 93 NWHDLVLWTLQQGM-----PGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGYR 164 (334)
T ss_pred cHHHHHHHHHHcCc-----hhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcccc
Confidence 99999999999996 89999999999 558888899999995 57999999999988 99887433 89999999
Q ss_pred ccCCCc----eEEEEEEEEEEEec
Q 009727 224 GGGGSS----FGIILSWKIKLVRV 243 (527)
Q Consensus 224 G~~~g~----~GIVt~~~lkl~p~ 243 (527)
-+..-. --||++++|++.|-
T Consensus 165 ~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 165 DSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cccCCCCCcCCEEEEEEEEEecCC
Confidence 663332 23999999999985
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=9.1e-16 Score=155.03 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=137.4
Q ss_pred CCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEc---CCCCEEEEcCCC
Q 009727 69 TTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEIN---LEDETAWVQSGA 145 (527)
Q Consensus 69 ~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d---~~~~~v~v~~G~ 145 (527)
......+++.|+|.+|+++++++++++++|+.+.|+|+|.... +.+.+|+||.+++|+.+++. .+...++|++|+
T Consensus 26 IGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~--D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~ 103 (354)
T PRK14648 26 IGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIA--DEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGAGL 103 (354)
T ss_pred eCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEe--CCCccEEEEEeCCcCceEEeeccCCcEEEEEEeCC
Confidence 4457788999999999999999999999999999999998865 45567999999779998752 232479999999
Q ss_pred CHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEE--------------------ee
Q 009727 146 NLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLI--------------------DV 204 (527)
Q Consensus 146 ~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV--------------------~~ 204 (527)
.|.+|.+++.++|+ .|.+..+||+| +.||+.-++.+.||. +.|.|.+++++ +.
T Consensus 104 ~~~~Lv~~~~~~gl-----~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~ 177 (354)
T PRK14648 104 PVAALLAFCAHHAL-----RGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDK 177 (354)
T ss_pred cHHHHHHHHHHcCC-----cchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccC
Confidence 99999999999996 89999999999 558888889999996 56999999999 45
Q ss_pred CCeEee-----------cccCChhhhhhhhccCCCc---------eEEEEEEEEEEEecC
Q 009727 205 NGRILD-----------RRAMGEDLFWAIRGGGGSS---------FGIILSWKIKLVRVP 244 (527)
Q Consensus 205 ~G~i~~-----------~~~~~~dL~~a~rG~~~g~---------~GIVt~~~lkl~p~~ 244 (527)
+|++.. ..-.+.|+.|+||-+..-. --||++++|++.|..
T Consensus 178 ~g~~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 178 RGECLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred CCceecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 677620 0123479999999764321 139999999999854
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.64 E-value=1.1e-16 Score=114.95 Aligned_cols=47 Identities=49% Similarity=0.846 Sum_probs=34.7
Q ss_pred cccCCCCcccCCcccCCcchHHhhhhHhhhhcccHHHHHHHHhccCCCCCcccCCCCC
Q 009727 462 AYINYRDLDLGTNKLQNASYSEAAAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSIP 519 (527)
Q Consensus 462 ~Y~Ny~d~~l~~~~~~~~~~~~~~~w~~~yyg~n~~RL~~IK~kyDP~~vF~~~~~i~ 519 (527)
+|+||+|.+++. ++|.+.|||+||+||++||++|||+|||+++|+||
T Consensus 1 aY~Ny~d~~~~~-----------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLPG-----------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGGS-----------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccch-----------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 699999998641 37999999999999999999999999999999996
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.57 E-value=1.5e-14 Score=143.22 Aligned_cols=131 Identities=20% Similarity=0.305 Sum_probs=113.7
Q ss_pred EEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccccccceeE
Q 009727 120 IIIDLINMRSI-EINLEDETAWVQSGANLGELYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQVVD 198 (527)
Q Consensus 120 vvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~v~~ 198 (527)
--|++..+..| ++|.++++|+|+|+|+++|+.++|...|+.+++. ..-...++||.+.|-|+-..|.+||+..+.+.+
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~-~EldDlTvGGLinG~Gies~ShkyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVL-PELDDLTVGGLINGVGIESSSHKYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeee-cccccceecceeeecccccccchhhhHHhhhhe
Confidence 33566655565 8999999999999999999999999999776653 344677899999999999999999999999999
Q ss_pred EEEEeeCCeEee--cccCChhhhhhhhccCCCceEEEEEEEEEEEecCceEEEEEE
Q 009727 199 AYLIDVNGRILD--RRAMGEDLFWAIRGGGGSSFGIILSWKIKLVRVPETVTSFTV 252 (527)
Q Consensus 199 ~~vV~~~G~i~~--~~~~~~dL~~a~rG~~~g~~GIVt~~~lkl~p~~~~~~~~~~ 252 (527)
.|||++||++++ .+++++|||+|+-.+ .|++|..+.+++|+.|..+.+..-.+
T Consensus 183 YEvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yvkltyi 237 (543)
T KOG1262|consen 183 YEVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYVKLTYI 237 (543)
T ss_pred eEEEecCCeEEEecCCcccCceEEEcccc-cCchheeeeeEEEEEeccceEEEEEE
Confidence 999999999998 456899999999999 89999999999999999886654333
No 32
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=7.4e-14 Score=137.48 Aligned_cols=150 Identities=21% Similarity=0.195 Sum_probs=124.1
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCC-CCCeEEcCCCCEEEEcCCCCHHH
Q 009727 71 PKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLIN-MRSIEINLEDETAWVQSGANLGE 149 (527)
Q Consensus 71 ~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~-~~~i~~d~~~~~v~v~~G~~~~~ 149 (527)
....+++ |+|++|+++++ ++|+.+.|+|+|.... +.+.++++|.+++ ++.++++. +|++|+.|.+
T Consensus 19 G~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~--D~g~~g~vI~l~~~~~~~~~~~-----~a~AG~~~~~ 84 (273)
T PRK14651 19 GPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVS--DAGVPERVIRLGGEFAEWDLDG-----WVGGGVPLPG 84 (273)
T ss_pred ceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEc--CCCcceEEEEECCcceeEeECC-----EEECCCcHHH
Confidence 4556667 99999999988 5999999999998855 4556789998865 66665542 6999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEEeeCCeEeecccCChhhhhhhhccCCC
Q 009727 150 LYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGS 228 (527)
Q Consensus 150 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~g 228 (527)
|.+++.++|+ .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++ +|++++.. +.|+.|+||-+...
T Consensus 85 l~~~~~~~gl-----~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~--~~e~~f~YR~S~~~ 155 (273)
T PRK14651 85 LVRRAARLGL-----SGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYS--PDELGFGYRHSGLP 155 (273)
T ss_pred HHHHHHHCCC-----cchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEE--HHHccccccccCCC
Confidence 9999999996 89999999999 558888899999995 579999999997 89988743 38999999966332
Q ss_pred ceEEEEEEEEEEEec
Q 009727 229 SFGIILSWKIKLVRV 243 (527)
Q Consensus 229 ~~GIVt~~~lkl~p~ 243 (527)
.--||++++|++.|.
T Consensus 156 ~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 156 PGHVVTRVRLKLRPS 170 (273)
T ss_pred CCEEEEEEEEEECCC
Confidence 224999999999875
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.26 E-value=2.3e-11 Score=118.82 Aligned_cols=144 Identities=15% Similarity=0.101 Sum_probs=116.0
Q ss_pred CCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEEEEcCCCCHHH
Q 009727 70 TPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETAWVQSGANLGE 149 (527)
Q Consensus 70 ~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v~v~~G~~~~~ 149 (527)
....++++.|++.+ + ++|+.+.|+|+|.... +.+.+++ |-+++++.++++. ..++|++|+.|.+
T Consensus 16 GG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~--D~g~~~v-v~~~~~~~~~~~~--~~v~~~AG~~l~~ 79 (257)
T PRK13904 16 GPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLIS--PNPKNLA-ILGKNFDYIKIDG--ECLEIGGATKSGK 79 (257)
T ss_pred CceEEEEEEechhh-h----------CCCeEEEeceeEEEEe--cCCccEE-EEccCcCeEEEeC--CEEEEEcCCcHHH
Confidence 34667788888887 5 8999999999998754 3333444 4346688888754 4799999999999
Q ss_pred HHHHHHHcCCcccccCCCCCccccccccccCcCCCccccccc-cccceeEEEEEeeCCeEeecccCChhhhhhhhccCCC
Q 009727 150 LYYALAMKSLVHGFPAGLCPTVGIGGHLGGGGFGTLLRKYGL-AADQVVDAYLIDVNGRILDRRAMGEDLFWAIRGGGGS 228 (527)
Q Consensus 150 l~~~l~~~g~~~~~~~g~~~~vgigG~~~ggg~g~~~~~~G~-~~D~v~~~~vV~~~G~i~~~~~~~~dL~~a~rG~~~g 228 (527)
|.+++.++|+ .|.+..+||+| +.||+.-++.+.||. +.|.|.++++++ |+ + ...|+.|+||-+..
T Consensus 80 l~~~~~~~gl-----~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~- 145 (257)
T PRK13904 80 IFNYAKKNNL-----GGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI- 145 (257)
T ss_pred HHHHHHHCCC-----chhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC-
Confidence 9999999996 89999999999 558888889999996 579999999998 42 2 24899999996532
Q ss_pred ceEEEEEEEEEEEecC
Q 009727 229 SFGIILSWKIKLVRVP 244 (527)
Q Consensus 229 ~~GIVt~~~lkl~p~~ 244 (527)
-.||++++||+.|..
T Consensus 146 -~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 -NGVILEARFKKTHGF 160 (257)
T ss_pred -CcEEEEEEEEECCCC
Confidence 259999999999854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.40 E-value=0.02 Score=53.14 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=52.1
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcc-ccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHH
Q 009727 74 LLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSY-LCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELY 151 (527)
Q Consensus 74 ~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~-~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 151 (527)
..+++|+|.+|..++++ .+-...+.+||+.....-. .......+||++++..+ .|..+++.+++|+++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45789999999999987 2335788899988542110 11123589999987665 455557899999999999998
Q ss_pred HH
Q 009727 152 YA 153 (527)
Q Consensus 152 ~~ 153 (527)
+.
T Consensus 79 ~~ 80 (171)
T PF00941_consen 79 ES 80 (171)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.92 E-value=0.087 Score=52.22 Aligned_cols=140 Identities=16% Similarity=0.099 Sum_probs=83.7
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHH
Q 009727 75 LIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYYA 153 (527)
Q Consensus 75 ~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~ 153 (527)
-++.|+|.+|..++++ +++-...+.+||+...... ......++||++++ .. .+..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 3679999999988765 3433457899999974221 12224688999976 55 45556789999999999999764
Q ss_pred HHHcCCccc-----c-cCCCCCccccccccccCcCCCccccccccccc-----eeEEEEEeeCCeEeecccCChhhhhhh
Q 009727 154 LAMKSLVHG-----F-PAGLCPTVGIGGHLGGGGFGTLLRKYGLAADQ-----VVDAYLIDVNGRILDRRAMGEDLFWAI 222 (527)
Q Consensus 154 l~~~g~~~~-----~-~~g~~~~vgigG~~~ggg~g~~~~~~G~~~D~-----v~~~~vV~~~G~i~~~~~~~~dL~~a~ 222 (527)
..-.. .+. + ....-...+|||.+..+-- ..|. .+..+|+..+++.+.. .|+|
T Consensus 79 ~~~~~-~L~~a~~~vas~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~--- 141 (258)
T PRK09799 79 RFIPA-ALREALGFVYSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYL--- 141 (258)
T ss_pred cccHH-HHHHHHHHhCCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhc---
Confidence 21100 011 1 1123355678887764321 1332 2556667666643322 3443
Q ss_pred hccCCCceEEEEEEEEE
Q 009727 223 RGGGGSSFGIILSWKIK 239 (527)
Q Consensus 223 rG~~~g~~GIVt~~~lk 239 (527)
.|. . =.|||++.+.
T Consensus 142 ~g~-~--~Eil~~I~iP 155 (258)
T PRK09799 142 ACP-C--DRLLTEIIIP 155 (258)
T ss_pred CCC-C--CcEEEEEEcC
Confidence 222 1 2488888764
No 36
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.64 E-value=0.066 Score=54.08 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=63.2
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCC-CccccCCCeEEEEcCCCCCe-EEc-CCCCEEEEcCCCCHHHHH
Q 009727 75 LIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEG-LSYLCRTPFIIIDLINMRSI-EIN-LEDETAWVQSGANLGELY 151 (527)
Q Consensus 75 ~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g-~s~~~~~~gvvIdl~~~~~i-~~d-~~~~~v~v~~G~~~~~l~ 151 (527)
-++.|+|.+|..++++. +. ...+.+||++... ..........+||++++... .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 47899999999888753 22 3578999998631 11112223688999986654 344 234679999999999997
Q ss_pred H--HHHHcCCccc-----c-cCCCCCccccccccccC
Q 009727 152 Y--ALAMKSLVHG-----F-PAGLCPTVGIGGHLGGG 180 (527)
Q Consensus 152 ~--~l~~~g~~~~-----~-~~g~~~~vgigG~~~gg 180 (527)
+ .+.+.-..+. + ....-...+|||.+..+
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 5 1111100000 1 12334566788888654
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.95 E-value=0.19 Score=49.85 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=62.3
Q ss_pred EEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHH-
Q 009727 76 IITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYYA- 153 (527)
Q Consensus 76 vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~- 153 (527)
++.|+|.+|..++++ +++-.-.+.+||++..-... .....++||++++ .. .|..+++.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 579999999888765 34333567899999752211 1223588999876 54 45555678999999999998752
Q ss_pred -----HHHcCCcccccCCCCCccccccccccC
Q 009727 154 -----LAMKSLVHGFPAGLCPTVGIGGHLGGG 180 (527)
Q Consensus 154 -----l~~~g~~~~~~~g~~~~vgigG~~~gg 180 (527)
|.+.-..+ -....-+..++||.+..+
T Consensus 79 ~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 79 LTPAALKEALGFV-YSRHIRNQATIGGEIAAF 109 (257)
T ss_pred chHHHHHHHHHHh-CCHHHhccccHHHHhhcC
Confidence 22210000 112334556788887643
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=93.35 E-value=0.22 Score=53.69 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=67.6
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCC-ccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHH
Q 009727 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGL-SYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGEL 150 (527)
Q Consensus 73 p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l 150 (527)
..-+++|+|.+|+.++++- +. ...+.+||++..-. .........+||++++..+ .|..+++.+++|+++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 3468999999999988753 32 35788999996421 1111223688999987655 45555678999999999999
Q ss_pred HHHHHHcCCccc-----cc-CCCCCccccccccccC
Q 009727 151 YYALAMKSLVHG-----FP-AGLCPTVGIGGHLGGG 180 (527)
Q Consensus 151 ~~~l~~~g~~~~-----~~-~g~~~~vgigG~~~gg 180 (527)
.+.+.++=..+. +. ...-...+|||.+..+
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 876654310011 11 2344566788887643
No 39
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=93.23 E-value=0.36 Score=47.17 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=23.6
Q ss_pred hHhhhhcccHHHHHHHHhccCCCCCcccCC
Q 009727 487 WGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516 (527)
Q Consensus 487 w~~~yyg~n~~RL~~IK~kyDP~~vF~~~~ 516 (527)
....| +++.+..+||+++||+|+|.++.
T Consensus 171 l~~lY--Pr~~dFlavR~~lDP~G~F~N~y 198 (257)
T PLN00107 171 AIAKY--KKAGEFLKVKERLDPEGLFSSEW 198 (257)
T ss_pred HHHHC--cCHHHHHHHHHHhCCCCccCCHH
Confidence 34456 79999999999999999998763
No 40
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=92.38 E-value=0.061 Score=53.52 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=24.7
Q ss_pred hhhHhhhhcccHHHHHHHHhccCCCCCcccCCCC
Q 009727 485 AAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQSI 518 (527)
Q Consensus 485 ~~w~~~yyg~n~~RL~~IK~kyDP~~vF~~~~~i 518 (527)
++|. .-||+.|+|+++-|++|||.+++.--|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 5796 57799999999999999999999877776
No 41
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=92.00 E-value=0.27 Score=50.22 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=61.8
Q ss_pred EEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCc-cccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHH
Q 009727 75 LIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLS-YLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYY 152 (527)
Q Consensus 75 ~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s-~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~ 152 (527)
-++.|+|.+|..++++- ++ .-.+.+||++..... ........+||++++..+ .|..+.+.+++|++|++.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 47899999999887653 32 346799999853211 111223688999976544 3444567899999999999854
Q ss_pred H---------HHHcCCcccccCCCCCcccccccccc
Q 009727 153 A---------LAMKSLVHGFPAGLCPTVGIGGHLGG 179 (527)
Q Consensus 153 ~---------l~~~g~~~~~~~g~~~~vgigG~~~g 179 (527)
. |.+.-..+ -....-...+|||.+..
T Consensus 82 ~~~i~~~~p~L~~a~~~i-as~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 82 DALVRTRWPALAQAARAV-AGPTHRAAATLGGNLCL 116 (321)
T ss_pred ChhhHhHhHHHHHHHHHh-CCHHHhCceecHHhhhc
Confidence 2 11110000 01233355688998875
No 42
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.66 E-value=0.44 Score=47.40 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccc--CCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHHHH--
Q 009727 79 PFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLC--RTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELYYA-- 153 (527)
Q Consensus 79 P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~--~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~~~-- 153 (527)
|+|.+|+.+++.- +. ...+.+||+...-.-... .....+||++++..+ .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7888888887763 22 357899999864211111 113688999987666 56666789999999999999642
Q ss_pred HHHcCCccc-----c-cCCCCCccccccccccC
Q 009727 154 LAMKSLVHG-----F-PAGLCPTVGIGGHLGGG 180 (527)
Q Consensus 154 l~~~g~~~~-----~-~~g~~~~vgigG~~~gg 180 (527)
+.++-..+. + ....-...++||.+..+
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 111000000 1 12334566899988654
No 43
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=87.51 E-value=0.59 Score=46.26 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=19.6
Q ss_pred hhHhhhhcccHHHHHHHHhccCCCCCcccC
Q 009727 486 AWGIKYFKSNFKRLALVKSKVDPGNFFRNE 515 (527)
Q Consensus 486 ~w~~~yyg~n~~RL~~IK~kyDP~~vF~~~ 515 (527)
...+.| +++++..++|+++||+|+|.++
T Consensus 227 ~l~~~Y--p~~~~F~~~r~~~DP~g~F~n~ 254 (259)
T PF04030_consen 227 QLRKLY--PRLDDFLAVRKKLDPQGVFLND 254 (259)
T ss_dssp HHHHT---TTHHHHHHHHHHH-TT-TT--H
T ss_pred HHHHHC--cCHHHHHHHHHHhCCCCCCCCH
Confidence 345555 8999999999999999999764
No 44
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=85.95 E-value=1.8 Score=41.73 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=20.8
Q ss_pred hhHhhhhcc-cHHHHHHHHhccCCCCCcc
Q 009727 486 AWGIKYFKS-NFKRLALVKSKVDPGNFFR 513 (527)
Q Consensus 486 ~w~~~yyg~-n~~RL~~IK~kyDP~~vF~ 513 (527)
.|-...+|+ .+.-+++||+.+||+|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 216 PYLEEEYGPAALRLMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHCHHCHHHHHHHHHHHHHHH-TTS-BS
T ss_pred HHHHHhcchHHHHHHHHhhhccCCccCCC
Confidence 354455665 7999999999999999995
No 45
>PLN02906 xanthine dehydrogenase
Probab=85.22 E-value=1.4 Score=53.59 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=55.8
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCC-ccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHH
Q 009727 74 LLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGL-SYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELY 151 (527)
Q Consensus 74 ~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 151 (527)
.-++.|+|.+|+.++++- +. ...+.+||++..-. ........++||++++..+ .|..++..+++|+++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 358899999999987653 21 24678999997421 1111223689999986655 455556789999999999999
Q ss_pred HHHHH
Q 009727 152 YALAM 156 (527)
Q Consensus 152 ~~l~~ 156 (527)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86543
No 46
>PLN00192 aldehyde oxidase
Probab=84.83 E-value=2.3 Score=51.91 Aligned_cols=84 Identities=12% Similarity=0.078 Sum_probs=58.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHH
Q 009727 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELY 151 (527)
Q Consensus 73 p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 151 (527)
..-++.|+|.+|+.+++......+-...+..||++..-.-. .....++||++++..+ .|..+++.++||+++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKD-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeec-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34688999999999886532101123677889998643211 2223689999986665 455566789999999999998
Q ss_pred HHHHHc
Q 009727 152 YALAMK 157 (527)
Q Consensus 152 ~~l~~~ 157 (527)
+.+.+.
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 776553
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=83.58 E-value=2.7 Score=51.26 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=55.9
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCC-ccccCCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHHH
Q 009727 74 LLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGL-SYLCRTPFIIIDLINMRSI-EINLEDETAWVQSGANLGELY 151 (527)
Q Consensus 74 ~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~-s~~~~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l~ 151 (527)
..++.|+|.+|+.++++. +. ...+.+||+++.-. .........+||++++..+ .|..+++.+++|+++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 358899999999988753 22 35678999997421 1111123588999986665 455566789999999999998
Q ss_pred HHHH
Q 009727 152 YALA 155 (527)
Q Consensus 152 ~~l~ 155 (527)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 48
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=80.39 E-value=3.8 Score=42.07 Aligned_cols=140 Identities=18% Similarity=0.110 Sum_probs=80.1
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCcccc-CCCeEEEEcCCCCCe-EEcCCCCEEEEcCCCCHHHH
Q 009727 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYLC-RTPFIIIDLINMRSI-EINLEDETAWVQSGANLGEL 150 (527)
Q Consensus 73 p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~~-~~~gvvIdl~~~~~i-~~d~~~~~v~v~~G~~~~~l 150 (527)
-..++.|.+.+|...++. . +-..++..|++.+.-..+.. .+=..+|-..++..+ .|+...+.+++|+|+++.|.
T Consensus 203 ~~r~~~P~~l~D~a~l~a--a--~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a 278 (493)
T COG4630 203 DDRFIVPATLADFADLLA--A--HPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQA 278 (493)
T ss_pred CceeEeeccHHHHHHHHh--h--CCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHH
Confidence 345789999999998863 2 33456666777754322111 111344555555555 56667789999999999999
Q ss_pred HHHHHHcCCccc--cc-CCCC---CccccccccccCcCCCccccccccc--cceeEEEEEeeCCeEeecccCChhhhhhh
Q 009727 151 YYALAMKSLVHG--FP-AGLC---PTVGIGGHLGGGGFGTLLRKYGLAA--DQVVDAYLIDVNGRILDRRAMGEDLFWAI 222 (527)
Q Consensus 151 ~~~l~~~g~~~~--~~-~g~~---~~vgigG~~~ggg~g~~~~~~G~~~--D~v~~~~vV~~~G~i~~~~~~~~dL~~a~ 222 (527)
++.|.++=..+. ++ -|+. +.-+|||.+..| |.. |-+- =-.+..++++-.|.-.+. -.-.|.|-+|
T Consensus 279 ~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIang-----SPI-GDtPPaLIALgA~ltLr~g~~~Rt-lPLe~~Fi~Y 351 (493)
T COG4630 279 YRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANG-----SPI-GDTPPALIALGATLTLRSGDGRRT-LPLEDYFIAY 351 (493)
T ss_pred HHHHHhhCchHHHHHHHhcchhhhccccccccccCC-----CcC-CCCCchhhhcCcEEEEEecCCccc-ccHHHHHHHh
Confidence 999987532221 11 1222 334566665433 211 2111 134677777777664431 1125777777
Q ss_pred h
Q 009727 223 R 223 (527)
Q Consensus 223 r 223 (527)
+
T Consensus 352 ~ 352 (493)
T COG4630 352 G 352 (493)
T ss_pred h
Confidence 5
No 49
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=72.58 E-value=8 Score=42.74 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=27.9
Q ss_pred hhhhHhhhhcc-cHHHHHHHHhccCCCCCcccCCCCC
Q 009727 484 AAAWGIKYFKS-NFKRLALVKSKVDPGNFFRNEQSIP 519 (527)
Q Consensus 484 ~~~w~~~yyg~-n~~RL~~IK~kyDP~~vF~~~~~i~ 519 (527)
+..|-..+||+ .++-+++||+.+||+|+++--.=++
T Consensus 514 k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 514 KMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 35677788885 7999999999999999995433333
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=72.33 E-value=11 Score=37.69 Aligned_cols=75 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred ccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCCCCCCCCccc-cCCCeEEEEcCCCC-Ce-EEcCCCCEEEEcCCCCHHH
Q 009727 73 PLLIITPFHESEIQAAVFCSKNHDLQIRVRSGGHDYEGLSYL-CRTPFIIIDLINMR-SI-EINLEDETAWVQSGANLGE 149 (527)
Q Consensus 73 p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggGh~~~g~s~~-~~~~gvvIdl~~~~-~i-~~d~~~~~v~v~~G~~~~~ 149 (527)
+-.+.+|.|.+|-..+++ +++ --.+.+|||++...--. -....-+||++++. .. .+..+.+.+++|+-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456789999887776654 555 67889999997632111 11235779998874 22 3344567799999999999
Q ss_pred HH
Q 009727 150 LY 151 (527)
Q Consensus 150 l~ 151 (527)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 96
No 51
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=65.97 E-value=4.2 Score=43.21 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.0
Q ss_pred hhhHhhhhcc-cHHHHHHHHhccCCCCCcc
Q 009727 485 AAWGIKYFKS-NFKRLALVKSKVDPGNFFR 513 (527)
Q Consensus 485 ~~w~~~yyg~-n~~RL~~IK~kyDP~~vF~ 513 (527)
..|....||+ .++-+++||+.+||+|+++
T Consensus 381 ~~~~~~~~~~~~~~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 381 AEFMPYKFNEKELETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcCcCCC
Confidence 3466666774 7999999999999999986
No 52
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=51.44 E-value=7.5 Score=41.01 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=19.0
Q ss_pred ccHHHHHHHHhccCCCCCcc
Q 009727 494 SNFKRLALVKSKVDPGNFFR 513 (527)
Q Consensus 494 ~n~~RL~~IK~kyDP~~vF~ 513 (527)
.|+++..+||+++||+++|.
T Consensus 485 ~n~~~flkvr~~lDP~~lFs 504 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFS 504 (518)
T ss_pred cChHHHHHHHHhcCccchhh
Confidence 79999999999999999994
No 53
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=48.36 E-value=11 Score=20.98 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=7.5
Q ss_pred CchHHHHHHHHHhhh
Q 009727 1 MRHIVLVSLLLLLVS 15 (527)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (527)
|+.++++.+||+.+.
T Consensus 2 Mk~vIIlvvLLliSf 16 (19)
T PF13956_consen 2 MKLVIILVVLLLISF 16 (19)
T ss_pred ceehHHHHHHHhccc
Confidence 455545555554443
No 54
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=45.22 E-value=76 Score=31.47 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=65.4
Q ss_pred hhHHHhhhhccCCCCCCcceEecCCCcchhHHHhhcccCcCccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEEc
Q 009727 24 EDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVRS 103 (527)
Q Consensus 24 ~~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~g 103 (527)
++...-+...+-+ -..|++||-++.+.+.. . ...+|.+|++++-+...+.|.+-++.=
T Consensus 119 ~~a~~~l~~~LlP----~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliK 176 (263)
T COG0351 119 EEAVEALREELLP----LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIK 176 (263)
T ss_pred hHHHHHHHHHhhc----cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 3444444444433 45689999888877642 1 378999999999999999999988888
Q ss_pred CCCCCCCCccccCCCeEEEEcCCCCCe---EEcCCCCEEEEcCCCCHHHHHHHHHHcCC
Q 009727 104 GGHDYEGLSYLCRTPFIIIDLINMRSI---EINLEDETAWVQSGANLGELYYALAMKSL 159 (527)
Q Consensus 104 gGh~~~g~s~~~~~~gvvIdl~~~~~i---~~d~~~~~v~v~~G~~~~~l~~~l~~~g~ 159 (527)
|||... .+ . .++.|-..+..+ .++.+ =+=|.|+++.-....-..+|+
T Consensus 177 GGH~~~-~~--~---D~l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 177 GGHLEG-EA--V---DVLYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred CCCCCC-Cc--e---eEEEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCC
Confidence 899865 21 1 244443322111 12222 246889998765544444443
No 55
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=45.15 E-value=13 Score=40.77 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=22.3
Q ss_pred hHhhhhcccHHHHHHHHhccCCCCCcccCC
Q 009727 487 WGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516 (527)
Q Consensus 487 w~~~yyg~n~~RL~~IK~kyDP~~vF~~~~ 516 (527)
|.+.| + +.+..+|++++||+++|.|+.
T Consensus 509 l~~~Y--P-~d~F~~~R~~lDP~g~F~N~y 535 (541)
T TIGR01676 509 LKKKF--P-VDASNKARKALDPNKILSNNK 535 (541)
T ss_pred HHhhC--C-HHHHHHHHHHhCCCCccccHH
Confidence 55555 3 799999999999999998753
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.79 E-value=31 Score=35.13 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=40.6
Q ss_pred ceEecCCCcchhHHHhhcccCcCccCCCCCCccEEEecCC------HHHHHHHHHHHHhCC------CcEEEEcCCC
Q 009727 42 EIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFH------ESEIQAAVFCSKNHD------LQIRVRSGGH 106 (527)
Q Consensus 42 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dV~~~v~~a~~~~------~~~~v~ggGh 106 (527)
+.|.-|+...|.+++... +.||. ....+++|.. +++|.++++.+.+.+ +=|.+||||+
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~~-----~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRNP-----IVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhCC-----CcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 445567788888887632 33663 4556777765 688999999998654 5677888884
No 57
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=41.95 E-value=43 Score=36.39 Aligned_cols=68 Identities=7% Similarity=0.083 Sum_probs=46.6
Q ss_pred HHHhhhhccCCCCCCcceEecCCCcchhHHHhhcccCcCccCCCCCCccEEEecCCHHHHHHHHHHHHhCC-CcEEE
Q 009727 26 FMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHESEIQAAVFCSKNHD-LQIRV 101 (527)
Q Consensus 26 ~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~-~~~~v 101 (527)
+.+-+++.. .++.+.++.-+=++-+.+.. +... ......|-.+++|.|.|+|..++++|+++- .||.+
T Consensus 113 Lv~kara~G---~~I~gvvIsAGIP~le~A~E-lI~~----L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIil 181 (717)
T COG4981 113 LVQKARASG---APIDGVVISAGIPSLEEAVE-LIEE----LGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIIL 181 (717)
T ss_pred HHHHHHhcC---CCcceEEEecCCCcHHHHHH-HHHH----HhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEE
Confidence 444455543 35678888877777776643 1111 122357888999999999999999999984 56655
No 58
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=39.25 E-value=18 Score=37.50 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=17.3
Q ss_pred cc-HHHHHHHHhccCCCCCcc
Q 009727 494 SN-FKRLALVKSKVDPGNFFR 513 (527)
Q Consensus 494 ~n-~~RL~~IK~kyDP~~vF~ 513 (527)
.+ .+-.++||++|||.++|+
T Consensus 324 ~~~~~l~~~lK~~fDP~~iln 344 (352)
T PRK11282 324 APLLRIHRRLKQAFDPAGIFN 344 (352)
T ss_pred HHHHHHHHHHHHhcCcccCCC
Confidence 44 677899999999999995
No 59
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=36.13 E-value=25 Score=39.00 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=23.9
Q ss_pred hhhHhhhhcccHHHHHHHHhccCCCCCcccCC
Q 009727 485 AAWGIKYFKSNFKRLALVKSKVDPGNFFRNEQ 516 (527)
Q Consensus 485 ~~w~~~yyg~n~~RL~~IK~kyDP~~vF~~~~ 516 (527)
..+.+.| + +.+.+++++++||+++|.|+.
T Consensus 537 ~~L~~~Y--P-~d~F~~~R~~lDP~g~f~N~~ 565 (573)
T PLN02465 537 ERLRKRF--P-VDAFNKARKELDPKGILSNNL 565 (573)
T ss_pred HHHHhhC--C-HHHHHHHHHHhCCCCccCCHH
Confidence 3566666 4 999999999999999998753
No 60
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=35.07 E-value=96 Score=32.26 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhhccCCCchhhHHHhhhhccCCCCCCcce--EecCCCcchhHHHhhcccCcCccCCCCCCccEEEecC
Q 009727 3 HIVLVSLLLLLVSRETSSSIQEDFMHCMSTQFGEYTRSFEI--IFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPF 80 (527)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~--v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~ 80 (527)
+|+++++++|+.+ .+..=+-+...-|..-...+ ..+ +|.+++..|.. -.|+ +..-|....
T Consensus 2 ~~~~~~~~~~~~~-~~~~c~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~--------~~~~-----~~tti~~~~ 63 (358)
T cd02875 2 IILLILLILLAIS-KSYECPCIEPELCEPIEIGP----RFEFLVFSVNSTNYPN--------YDWS-----KVTTIAIFG 63 (358)
T ss_pred chHHHHHHHHHHH-hcCCCCCCCHhhCCCccCCC----ceEEEEEEeCCCcCcc--------cccc-----cceEEEecC
Confidence 4444444444444 22333333455565555433 223 33555544432 2454 344444445
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc
Q 009727 81 HESEIQAAVFCSKNHDLQIRVRS 103 (527)
Q Consensus 81 s~~dV~~~v~~a~~~~~~~~v~g 103 (527)
+.+ .++++.|+++|+++.+.+
T Consensus 64 ~~~--~~~~~~A~~~~v~v~~~~ 84 (358)
T cd02875 64 DID--DELLCYAHSKGVRLVLKG 84 (358)
T ss_pred CCC--HHHHHHHHHcCCEEEEEC
Confidence 544 478889999999999864
No 61
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=43 Score=31.31 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCCC
Q 009727 85 IQAAVFCSKNHDLQIRVRSGGHDYE 109 (527)
Q Consensus 85 V~~~v~~a~~~~~~~~v~ggGh~~~ 109 (527)
..+.++|++++++|+.|.++|.++.
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 4567889999999999999999865
No 62
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.72 E-value=51 Score=35.29 Aligned_cols=57 Identities=26% Similarity=0.292 Sum_probs=40.2
Q ss_pred ceEecCCCcchhHHHhhcccCcCccCCCCCCccEEEecCCH------HHHHHHHHHHHhC--CCcEEEEcCC
Q 009727 42 EIIFNQDSSLYSYILQSSVQNPRYLNATTPKPLLIITPFHE------SEIQAAVFCSKNH--DLQIRVRSGG 105 (527)
Q Consensus 42 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~------~dV~~~v~~a~~~--~~~~~v~ggG 105 (527)
+.|.-|+...+.+.+.. -+.||. .-...++|..+ .+|.++++.+.+. .+=|.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~--~~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTV--LRRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHH--HHhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 44556777788888663 345664 24567777766 8899999888874 5667888888
No 63
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=28.61 E-value=2.9e+02 Score=29.36 Aligned_cols=34 Identities=32% Similarity=0.413 Sum_probs=32.1
Q ss_pred CccEEEecCCHHHHHHHHHHHHhCCCcEEEEcCC
Q 009727 72 KPLLIITPFHESEIQAAVFCSKNHDLQIRVRSGG 105 (527)
Q Consensus 72 ~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggG 105 (527)
....|+.|+-.|-...+.+.++++|+++.-||.|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 5678999999999999999999999999999998
No 64
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=26.79 E-value=92 Score=28.01 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.8
Q ss_pred cEEEecCCHHHHHHHHHHHHhCCCcEEEE
Q 009727 74 LLIITPFHESEIQAAVFCSKNHDLQIRVR 102 (527)
Q Consensus 74 ~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ 102 (527)
..|+.|.+.+|+..+++.|-+..-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999888788876
No 65
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.43 E-value=1.3e+02 Score=28.13 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred CccCCCCCCccEEEecCCHHHHHHHHHHHHhCCCcEEEE
Q 009727 64 RYLNATTPKPLLIITPFHESEIQAAVFCSKNHDLQIRVR 102 (527)
Q Consensus 64 r~~~~~~~~p~~vv~P~s~~dV~~~v~~a~~~~~~~~v~ 102 (527)
||-.. .+|..||...+++++.++.+.|++.|++..+.
T Consensus 118 ~We~~--GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i 154 (190)
T KOG3282|consen 118 RWENC--GQAKIVVKAESEEELMELQKDAKKLGLYTHLI 154 (190)
T ss_pred HHHHc--CCceEEEEcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 56532 48999999999999999999999999886543
No 66
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=23.43 E-value=1.2e+02 Score=27.97 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=26.2
Q ss_pred cEEEecCCHHHHHHHHHHHHh--CCCcEEEEcC
Q 009727 74 LLIITPFHESEIQAAVFCSKN--HDLQIRVRSG 104 (527)
Q Consensus 74 ~~vv~P~s~~dV~~~v~~a~~--~~~~~~v~gg 104 (527)
..|+.|.+.+|+..+++.+-+ .+-|+.+|-.
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 568999999999999999999 6689888754
No 67
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.95 E-value=76 Score=32.61 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEc--CCCCC
Q 009727 81 HESEIQAAVFCSKNHDLQIRVRS--GGHDY 108 (527)
Q Consensus 81 s~~dV~~~v~~a~~~~~~~~v~g--gGh~~ 108 (527)
|.+||+++|++|+++||.|.|-= =||+.
T Consensus 73 T~~di~elv~yA~~rgI~vIPEiD~PGH~~ 102 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEIDMPGHTN 102 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEecCCcHHHH
Confidence 88999999999999999998743 36653
No 68
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.81 E-value=77 Score=32.06 Aligned_cols=28 Identities=7% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE--cCCCC
Q 009727 80 FHESEIQAAVFCSKNHDLQIRVR--SGGHD 107 (527)
Q Consensus 80 ~s~~dV~~~v~~a~~~~~~~~v~--ggGh~ 107 (527)
=|.+||+++|++|+++||.|.|- .=||.
T Consensus 69 yT~~di~elv~yA~~rgI~viPEiD~PGH~ 98 (303)
T cd02742 69 YTYAQLKDIIEYAAARGIEVIPEIDMPGHS 98 (303)
T ss_pred ECHHHHHHHHHHHHHcCCEEEEeccchHHH
Confidence 47799999999999999998874 33666
No 69
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=21.63 E-value=1.1e+02 Score=25.57 Aligned_cols=34 Identities=6% Similarity=0.237 Sum_probs=28.3
Q ss_pred Ccc-EEEecCCHHHHHHHHHHHHhCCCcEEEEcCC
Q 009727 72 KPL-LIITPFHESEIQAAVFCSKNHDLQIRVRSGG 105 (527)
Q Consensus 72 ~p~-~vv~P~s~~dV~~~v~~a~~~~~~~~v~ggG 105 (527)
.|. .+|++.+..|+..++.+|.+.|+||.+.+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 443 4677788899999999999999999997754
No 70
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=21.50 E-value=1.7e+02 Score=29.40 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=36.3
Q ss_pred EecCCCcchhHHHhhcccCcCccCCCCCCcc-EEEecCCHHHHHHHHHHHHhCCCcEEEEcC
Q 009727 44 IFNQDSSLYSYILQSSVQNPRYLNATTPKPL-LIITPFHESEIQAAVFCSKNHDLQIRVRSG 104 (527)
Q Consensus 44 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~P~s~~dV~~~v~~a~~~~~~~~v~gg 104 (527)
+=.|.+-+|.+-+. .+|. -++...+.++|.+++.++.+.|+|+.+.|-
T Consensus 242 iP~p~~vd~~~wlk-------------~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~Ge 290 (324)
T COG2144 242 IPYPADVDFRQWLK-------------RYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGE 290 (324)
T ss_pred cCCcccccHHHHHH-------------hCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEE
Confidence 44677777776443 3454 566777778999999999999999999773
No 71
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=21.43 E-value=1.8e+02 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=31.1
Q ss_pred CCccEEEecCCHHHHHHHHHHHHhCCCcE-EEEcCCCC
Q 009727 71 PKPLLIITPFHESEIQAAVFCSKNHDLQI-RVRSGGHD 107 (527)
Q Consensus 71 ~~p~~vv~P~s~~dV~~~v~~a~~~~~~~-~v~ggGh~ 107 (527)
..+..|+++.|++++.++.+-|++.|++. .++-.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 57899999999999999999999999884 55556654
No 72
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.91 E-value=89 Score=31.64 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE--cCCCC
Q 009727 79 PFHESEIQAAVFCSKNHDLQIRVR--SGGHD 107 (527)
Q Consensus 79 P~s~~dV~~~v~~a~~~~~~~~v~--ggGh~ 107 (527)
+=|.+||++++++|+++||.|.|- .=||.
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 358999999999999999999873 23554
No 73
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.75 E-value=2.2e+02 Score=26.38 Aligned_cols=111 Identities=15% Similarity=0.070 Sum_probs=51.5
Q ss_pred chhhHHHhhhhccCCCCCCcceEecCCCcchhHHHhh-------cccCcCccCC-------CCCCccEEEecCCHH-HHH
Q 009727 22 IQEDFMHCMSTQFGEYTRSFEIIFNQDSSLYSYILQS-------SVQNPRYLNA-------TTPKPLLIITPFHES-EIQ 86 (527)
Q Consensus 22 ~~~~~~~cl~~~~~~~~~~~~~v~~p~~~~y~~~~~~-------~~~n~r~~~~-------~~~~p~~vv~P~s~~-dV~ 86 (527)
.-++-.+||.++..+ .+.||.-+-.+-+..... ...-.+|... ...--..++.|.+.+ |++
T Consensus 23 ~iedaARlLAQA~vg----eG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~ 98 (172)
T PF10740_consen 23 SIEDAARLLAQAIVG----EGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAV 98 (172)
T ss_dssp HHHHHHHHHHHHHHT----T--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHH
T ss_pred hHHHHHHHHHHHHhc----CCEEEEEecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHH
Confidence 456677899888765 677876654332221100 0011244421 112334667788877 999
Q ss_pred HHHHHHHhCCCcEEEEc-CCCCCCCCccccCCCeEEEEcCCCCCeEEcCCCCEE
Q 009727 87 AAVFCSKNHDLQIRVRS-GGHDYEGLSYLCRTPFIIIDLINMRSIEINLEDETA 139 (527)
Q Consensus 87 ~~v~~a~~~~~~~~v~g-gGh~~~g~s~~~~~~gvvIdl~~~~~i~~d~~~~~v 139 (527)
++++-+.+.|+|++..+ ..-.-... .+.--+-||++--+.+-.+++...+
T Consensus 99 ~~a~~L~~~gi~~v~Vs~~~~~~~~l---~~~~~~~Idl~~~~~LvP~EdG~Ri 149 (172)
T PF10740_consen 99 ALAKQLIEQGIPFVGVSPNKPDEEDL---EDLADVHIDLKLPKPLVPTEDGDRI 149 (172)
T ss_dssp HHHHHHHHHT--EEEEE-SS---TTG---GG-SSS-EE----S-SEE-TTS-EE
T ss_pred HHHHHHHHCCCCEEEEEecCCCCCch---hhhhhheeecccCCCcccCCCCCEe
Confidence 99999999999999999 22111111 1111366998887887777665444
No 74
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.61 E-value=77 Score=32.47 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEE--cCCCCC
Q 009727 79 PFHESEIQAAVFCSKNHDLQIRVR--SGGHDY 108 (527)
Q Consensus 79 P~s~~dV~~~v~~a~~~~~~~~v~--ggGh~~ 108 (527)
.=|.+||+++|++|+++||.|.|- .=||.-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~~ 100 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHAE 100 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-H
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHHH
Confidence 347899999999999999998764 457763
No 75
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.60 E-value=92 Score=31.74 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE--cCCCCC
Q 009727 80 FHESEIQAAVFCSKNHDLQIRVR--SGGHDY 108 (527)
Q Consensus 80 ~s~~dV~~~v~~a~~~~~~~~v~--ggGh~~ 108 (527)
=|.+|++++|++|+++||.|.|- .=||..
T Consensus 65 yT~~di~elv~yA~~rgI~vIPEId~PGH~~ 95 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPEIDVPGHAS 95 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEeecCccchH
Confidence 58899999999999999998774 336663
Done!