BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009728
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/442 (46%), Positives = 282/442 (63%), Gaps = 9/442 (2%)
Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 36 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 94
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 95 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 151
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 152 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 211
Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312
+F S G RY LA +D L FMSA G+ + + T E + SHE L+L YE+++
Sbjct: 212 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 269
Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369
RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ M P V+
Sbjct: 270 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 329
Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429
+E L+P NKPGR+T+++RMG +R LP ++ V+ +G V W DPMHGNT ++ G
Sbjct: 330 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 389
Query: 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 489
KTR FD I EV+ FF+VH G+HPGG+H+E+TG+NVTEC+GG++ ++ DL+ RY T
Sbjct: 390 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 449
Query: 490 CDPRLNASQSLELAFIIAERLR 511
CDPRLN QSLELAF++AE LR
Sbjct: 450 CDPRLNTQQSLELAFLVAEMLR 471
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/442 (46%), Positives = 282/442 (63%), Gaps = 9/442 (2%)
Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 28 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 86
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 87 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 143
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 144 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 203
Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312
+F S G RY LA +D L FMSA G+ + + T E + SHE L+L YE+++
Sbjct: 204 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 261
Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369
RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ M P V+
Sbjct: 262 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 321
Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429
+E L+P NKPGR+T+++RMG +R LP ++ V+ +G V W DPMHGNT ++ G
Sbjct: 322 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 381
Query: 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 489
KTR FD I EV+ FF+VH G+HPGG+H+E+TG+NVTEC+GG++ ++ DL+ RY T
Sbjct: 382 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 441
Query: 490 CDPRLNASQSLELAFIIAERLR 511
CDPRLN QSLELAF++AE LR
Sbjct: 442 CDPRLNTQQSLELAFLVAEMLR 463
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/442 (46%), Positives = 282/442 (63%), Gaps = 9/442 (2%)
Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L ++ L+ PP+ G+AFLLQG
Sbjct: 26 LDAALAKPAAQQPTWPADQAL-AMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 84
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQM VVL +G MPVVKV R+AGQ+AKPRS + +
Sbjct: 85 GDCAETFMDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRS---ADIDA 141
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A +NL+RA + G A++ V WN
Sbjct: 142 LGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMNLVRALTSSGLASLHLVHDWN 201
Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312
+F S G RY LA +D L FMSA G+ + + T E + SHE L+L YE+++
Sbjct: 202 REFVRTSPAGARYEALATEIDRGLRFMSACGVADRN--LQTAEIYASHEALVLDYERAML 259
Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369
RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ M P V+
Sbjct: 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEY 319
Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429
+E L+P NKPGR+T+++RMG +R LP ++ V+ +G V W DPMHGNT ++ G
Sbjct: 320 VERLDPHNKPGRLTLVSRMGNHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGF 379
Query: 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 489
KTR FD I EV+ FF+VH G+HPGG+H+E+TG+NVTEC+GG++ ++ DL+ RY T
Sbjct: 380 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 439
Query: 490 CDPRLNASQSLELAFIIAERLR 511
CDPRLN QSLELAF++AE LR
Sbjct: 440 CDPRLNTQQSLELAFLVAEMLR 461
>pdb|2B7O|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
pdb|2B7O|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Length = 464
Score = 383 bits (984), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/442 (44%), Positives = 273/442 (61%), Gaps = 9/442 (2%)
Query: 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGXXXXXXXXXXXXXMGKAFLLQG 132
+D+ +K A Q P +P + L + L+ PP+ G+AFLLQG
Sbjct: 28 LDAALAKPAAQQPTWPADQAL-AXRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQG 86
Query: 133 GDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192
GDCAE+F + +IR R LLQ VVL +G PVVKV R+AGQ+AKPRS + +
Sbjct: 87 GDCAETFXDNTEPHIRGNVRALLQXAVVLTYGASXPVVKVARIAGQYAKPRS---ADIDA 143
Query: 193 VKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWN 252
+ L SYRGD +NG A D +R DP RL+RAY ++A NL+RA + G A++ V WN
Sbjct: 144 LGLRSYRGDXINGFAPDAAAREHDPSRLVRAYANASAAXNLVRALTSSGLASLHLVHDWN 203
Query: 253 LDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312
+F S G RY LA +D L F SA G+ + + T E + SHE L+L YE++
Sbjct: 204 REFVRTSPAGARYEALATEIDRGLRFXSACGVADRN--LQTAEIYASHEALVLDYERAXL 261
Query: 313 RL---DSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKL 369
RL D +D SAH +W+GERTRQ+DGAH+ F + +ANP+G+K+ P V+
Sbjct: 262 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNXTPELAVEY 321
Query: 370 IEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL 429
+E L+P NKPGR+T+++R G +R LP ++ V+ +G V W DP HGNT ++ G
Sbjct: 322 VERLDPHNKPGRLTLVSRXGNHKVRDLLPPIVEKVQATGHQVIWQCDPXHGNTHESSTGF 381
Query: 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTH 489
KTR FD I EV+ FF+VH G+HPGG+H+E+TG+NVTEC+GG++ ++ DL+ RY T
Sbjct: 382 KTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTECLGGAQDISETDLAGRYETA 441
Query: 490 CDPRLNASQSLELAFIIAERLR 511
CDPRLN QSLELAF++AE LR
Sbjct: 442 CDPRLNTQQSLELAFLVAEXLR 463
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 301 ECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKG--VANPLGIK-- 356
+ L++ EQ + + L + L V E+ + + VE ++G +A +K
Sbjct: 83 KVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKEL 142
Query: 357 -------VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ 409
++DK D NEL+K+I+ + K G I++ + +E + H++ +++G+
Sbjct: 143 DEMVVGEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSE----AVSHVLPVAQQAGE 198
Query: 410 I 410
I
Sbjct: 199 I 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,422,397
Number of Sequences: 62578
Number of extensions: 637726
Number of successful extensions: 1612
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1591
Number of HSP's gapped (non-prelim): 7
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)