Query 009728
Match_columns 527
No_of_seqs 142 out of 457
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 16:37:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02291 phospho-2-dehydro-3-d 100.0 1E-211 3E-216 1629.8 46.5 449 69-517 18-466 (474)
2 TIGR01358 DAHP_synth_II 3-deox 100.0 1E-211 2E-216 1623.8 43.8 443 71-514 1-443 (443)
3 PF01474 DAHP_synth_2: Class-I 100.0 3E-206 6E-211 1582.1 28.2 438 70-507 1-439 (439)
4 COG3200 AroG 3-deoxy-D-arabino 100.0 2E-204 4E-209 1531.8 37.1 443 69-512 3-445 (445)
5 PRK09261 phospho-2-dehydro-3-d 96.7 0.018 3.9E-07 61.0 12.5 176 320-513 151-347 (349)
6 PRK12755 phospho-2-dehydro-3-d 96.7 0.031 6.8E-07 59.2 14.0 179 321-515 153-352 (353)
7 TIGR00034 aroFGH phospho-2-deh 96.1 0.12 2.5E-06 54.9 13.8 168 328-513 154-343 (344)
8 PRK12756 phospho-2-dehydro-3-d 94.8 0.5 1.1E-05 50.3 13.1 168 330-513 160-347 (348)
9 PRK12822 phospho-2-dehydro-3-d 94.6 0.79 1.7E-05 49.0 14.0 171 328-515 159-349 (356)
10 PF00793 DAHP_synth_1: DAHP sy 93.9 0.047 1E-06 55.6 3.3 148 326-506 108-262 (270)
11 PLN03033 2-dehydro-3-deoxyphos 93.1 0.18 3.9E-06 52.4 6.0 87 326-420 107-199 (290)
12 PRK13398 3-deoxy-7-phosphohept 92.1 0.73 1.6E-05 47.0 8.7 92 326-422 111-208 (266)
13 TIGR01362 KDO8P_synth 3-deoxy- 90.2 1.1 2.5E-05 46.0 7.9 90 326-420 93-185 (258)
14 KOG2599 Pyridoxal/pyridoxine/p 90.0 0.77 1.7E-05 47.9 6.6 64 358-421 59-123 (308)
15 PRK13396 3-deoxy-7-phosphohept 88.8 1.1 2.4E-05 47.8 6.9 90 326-420 185-281 (352)
16 PRK08673 3-deoxy-7-phosphohept 88.7 1.8 3.9E-05 45.8 8.3 94 326-423 177-275 (335)
17 PRK05198 2-dehydro-3-deoxyphos 86.8 3 6.5E-05 43.2 8.4 90 326-420 101-193 (264)
18 COG2240 PdxK Pyridoxal/pyridox 85.4 2 4.4E-05 44.6 6.5 65 358-422 50-116 (281)
19 PRK05756 pyridoxamine kinase; 84.7 2.2 4.8E-05 42.6 6.2 66 356-421 49-116 (286)
20 TIGR00687 pyridox_kin pyridoxa 83.4 2.7 5.9E-05 41.9 6.3 61 357-417 50-112 (286)
21 COG0722 AroG 3-deoxy-D-arabino 82.1 34 0.00074 36.8 13.8 183 316-514 147-350 (351)
22 PF10096 DUF2334: Uncharacteri 81.4 6.4 0.00014 39.4 8.0 97 357-458 9-126 (243)
23 PRK12457 2-dehydro-3-deoxyphos 79.8 15 0.00033 38.5 10.2 90 326-420 107-201 (281)
24 cd02803 OYE_like_FMN_family Ol 78.9 3.7 8E-05 41.7 5.5 107 263-389 134-252 (327)
25 TIGR01361 DAHP_synth_Bsub phos 76.6 7.6 0.00017 39.5 6.9 91 326-420 109-204 (260)
26 cd01173 pyridoxal_pyridoxamine 69.7 11 0.00023 36.7 5.9 67 350-418 40-111 (254)
27 PTZ00344 pyridoxal kinase; Pro 69.2 12 0.00027 37.8 6.4 64 356-419 52-117 (296)
28 PLN02978 pyridoxal kinase 64.7 13 0.00028 38.2 5.6 62 359-420 65-127 (308)
29 TIGR02644 Y_phosphoryl pyrimid 62.5 9.9 0.00021 41.5 4.5 87 360-471 47-141 (405)
30 cd02931 ER_like_FMN Enoate red 61.7 11 0.00024 40.0 4.7 90 264-374 144-262 (382)
31 PRK13523 NADPH dehydrogenase N 60.8 12 0.00026 39.3 4.6 91 263-374 135-237 (337)
32 cd04747 OYE_like_5_FMN Old yel 55.3 16 0.00035 38.9 4.6 90 264-374 138-245 (361)
33 COG1448 TyrB Aspartate/tyrosin 52.8 5.6 0.00012 43.2 0.7 47 387-443 108-168 (396)
34 cd02930 DCR_FMN 2,4-dienoyl-Co 52.5 17 0.00037 38.0 4.2 93 264-377 131-237 (353)
35 cd02067 B12-binding B12 bindin 52.2 48 0.001 28.8 6.3 55 355-415 31-87 (119)
36 PRK13397 3-deoxy-7-phosphohept 51.6 25 0.00055 36.1 5.1 91 326-420 99-194 (250)
37 cd04735 OYE_like_4_FMN Old yel 50.8 16 0.00035 38.3 3.6 90 264-374 138-245 (353)
38 cd04883 ACT_AcuB C-terminal AC 50.3 33 0.00072 26.7 4.5 35 375-413 36-70 (72)
39 TIGR03822 AblA_like_2 lysine-2 49.8 59 0.0013 33.9 7.5 135 363-511 152-295 (321)
40 PRK13296 tRNA CCA-pyrophosphor 49.0 27 0.00058 37.8 4.9 64 213-287 128-203 (360)
41 cd01828 sialate_O-acetylestera 48.7 76 0.0016 28.5 7.2 54 361-416 32-95 (169)
42 PRK12595 bifunctional 3-deoxy- 48.2 53 0.0011 35.2 7.0 89 326-420 202-297 (360)
43 PLN03033 2-dehydro-3-deoxyphos 48.2 28 0.0006 36.7 4.8 58 392-450 217-277 (290)
44 TIGR01309 L30P_arch 50S riboso 47.0 13 0.00027 35.6 1.9 109 79-204 26-145 (152)
45 cd04738 DHOD_2_like Dihydrooro 45.1 25 0.00053 36.6 3.9 38 351-389 203-240 (327)
46 PLN03007 UDP-glucosyltransfera 44.7 48 0.001 36.3 6.2 37 381-417 285-323 (482)
47 PRK10605 N-ethylmaleimide redu 42.6 36 0.00079 36.1 4.8 91 263-374 152-259 (362)
48 TIGR03212 uraD_N-term-dom puta 41.8 1.1E+02 0.0024 31.8 8.1 80 366-458 79-159 (297)
49 cd03174 DRE_TIM_metallolyase D 39.4 1.7E+02 0.0037 28.4 8.5 90 362-470 52-141 (265)
50 cd02071 MM_CoA_mut_B12_BD meth 39.0 1E+02 0.0022 27.4 6.4 56 354-415 30-87 (122)
51 PRK08255 salicylyl-CoA 5-hydro 38.4 37 0.0008 39.3 4.3 91 264-375 545-649 (765)
52 cd02685 MIT_C MIT_C; domain fo 38.0 86 0.0019 30.2 6.0 85 325-431 18-108 (148)
53 cd04734 OYE_like_3_FMN Old yel 37.0 40 0.00086 35.4 4.0 90 264-374 135-238 (343)
54 cd08555 PI-PLCc_GDPD_SF Cataly 36.1 97 0.0021 29.0 6.1 62 355-416 86-158 (179)
55 TIGR01036 pyrD_sub2 dihydrooro 35.5 38 0.00083 35.6 3.6 57 332-389 181-248 (335)
56 cd04741 DHOD_1A_like Dihydroor 34.8 54 0.0012 33.6 4.5 51 341-391 144-199 (294)
57 cd02929 TMADH_HD_FMN Trimethyl 33.8 49 0.0011 35.2 4.1 90 264-374 144-249 (370)
58 PRK05722 glucose-6-phosphate 1 33.0 35 0.00077 38.1 3.0 54 137-201 258-312 (495)
59 PRK10887 glmM phosphoglucosami 33.0 79 0.0017 34.1 5.5 14 407-422 170-183 (443)
60 PLN02826 dihydroorotate dehydr 32.7 47 0.001 36.2 3.8 55 332-387 231-298 (409)
61 PRK02506 dihydroorotate dehydr 32.5 45 0.00097 34.6 3.4 137 343-514 146-296 (310)
62 cd04733 OYE_like_2_FMN Old yel 32.2 61 0.0013 33.7 4.4 92 263-375 142-247 (338)
63 PRK05286 dihydroorotate dehydr 31.5 59 0.0013 34.2 4.2 38 351-389 212-249 (344)
64 cd01829 SGNH_hydrolase_peri2 S 29.6 1.4E+02 0.0031 27.4 5.9 28 391-418 91-118 (200)
65 cd02810 DHOD_DHPD_FMN Dihydroo 29.4 46 0.001 33.3 2.9 38 351-389 163-200 (289)
66 PRK06252 methylcobalamin:coenz 29.0 40 0.00086 34.6 2.4 50 393-442 178-230 (339)
67 cd05800 PGM_like2 This PGM-lik 28.9 1.3E+02 0.0028 32.5 6.3 63 353-422 107-185 (461)
68 PF00701 DHDPS: Dihydrodipicol 28.9 97 0.0021 31.2 5.1 87 359-461 49-135 (289)
69 cd01822 Lysophospholipase_L1_l 28.8 2.5E+02 0.0055 25.0 7.2 31 389-419 82-112 (177)
70 PF14658 EF-hand_9: EF-hand do 28.8 56 0.0012 27.5 2.8 35 343-384 21-55 (66)
71 PRK14314 glmM phosphoglucosami 28.1 79 0.0017 34.2 4.5 15 406-422 175-189 (450)
72 cd02911 arch_FMN Archeal FMN-b 27.3 67 0.0015 32.1 3.6 34 343-377 129-165 (233)
73 TIGR01463 mtaA_cmuA methyltran 27.2 52 0.0011 33.8 2.9 35 392-426 177-211 (340)
74 PF12617 LdpA_C: Iron-Sulfur b 27.0 1.3E+02 0.0027 30.1 5.3 59 363-422 20-81 (183)
75 TIGR02826 RNR_activ_nrdG3 anae 26.3 1.2E+02 0.0026 28.4 4.9 50 358-412 43-92 (147)
76 TIGR01037 pyrD_sub1_fam dihydr 26.0 1E+02 0.0022 31.2 4.7 36 351-389 158-193 (300)
77 TIGR03006 pepcterm_polyde poly 25.8 2.2E+02 0.0049 29.1 7.0 74 365-451 29-102 (265)
78 PRK12457 2-dehydro-3-deoxyphos 25.4 1.1E+02 0.0025 32.2 4.9 99 332-450 171-274 (281)
79 PRK07394 hypothetical protein; 25.2 63 0.0014 34.3 3.1 88 362-472 57-155 (342)
80 PRK11613 folP dihydropteroate 25.1 1.3E+02 0.0028 31.4 5.3 46 398-448 123-168 (282)
81 cd08229 STKc_Nek7 Catalytic do 25.1 1.9E+02 0.0041 27.1 6.0 34 264-299 107-140 (267)
82 PRK10885 cca multifunctional t 24.9 1.5E+02 0.0032 32.3 5.8 26 214-239 129-165 (409)
83 TIGR02370 pyl_corrinoid methyl 24.4 1.8E+02 0.0038 28.2 5.8 55 355-415 116-173 (197)
84 TIGR01942 pcnB poly(A) polymer 24.3 1.1E+02 0.0025 33.6 4.9 58 214-286 165-235 (410)
85 PRK05820 deoA thymidine phosph 23.9 1.1E+02 0.0023 34.1 4.6 63 360-428 50-122 (440)
86 TIGR02491 NrdG anaerobic ribon 23.9 1.6E+02 0.0035 27.3 5.2 55 357-414 42-101 (154)
87 TIGR02645 ARCH_P_rylase putati 23.8 82 0.0018 35.5 3.8 83 360-470 132-222 (493)
88 cd02933 OYE_like_FMN Old yello 23.6 1.3E+02 0.0029 31.6 5.1 94 264-376 146-253 (338)
89 PRK13298 tRNA CCA-pyrophosphor 23.0 1.9E+02 0.0041 32.0 6.2 26 213-238 128-164 (417)
90 PRK13237 tyrosine phenol-lyase 22.9 1.2E+02 0.0027 33.8 4.9 90 359-448 159-254 (460)
91 PRK08136 glycosyl transferase 22.8 67 0.0014 33.9 2.7 88 361-472 54-149 (317)
92 TIGR02692 tRNA_CCA_actino tRNA 22.4 1E+02 0.0022 33.7 4.2 62 214-287 167-238 (466)
93 cd02808 GltS_FMN Glutamate syn 21.8 1.1E+02 0.0023 33.0 4.1 67 341-408 203-281 (392)
94 cd02932 OYE_YqiM_FMN Old yello 21.5 1.4E+02 0.0031 30.9 4.8 95 264-376 148-253 (336)
95 PRK06049 rpl30p 50S ribosomal 21.4 99 0.0022 29.7 3.3 110 77-204 26-147 (154)
96 cd00959 DeoC 2-deoxyribose-5-p 21.3 1.1E+02 0.0024 29.6 3.7 31 341-372 162-195 (203)
97 KOG3943 THUMP domain-containin 21.1 76 0.0016 33.2 2.6 128 336-472 117-254 (291)
98 cd00468 HIT_like HIT family: H 21.0 2.2E+02 0.0047 22.8 4.8 55 123-178 17-75 (86)
99 PF01676 Metalloenzyme: Metall 21.0 1.1E+02 0.0023 30.6 3.7 83 341-427 98-202 (252)
100 KOG0747 Putative NAD+-dependen 20.9 1.3E+02 0.0029 32.3 4.4 61 380-453 176-241 (331)
101 TIGR02764 spore_ybaN_pdaB poly 20.3 4.6E+02 0.01 24.6 7.5 80 358-452 15-94 (191)
102 PLN02210 UDP-glucosyl transfer 20.1 1.7E+02 0.0037 32.0 5.3 78 336-417 209-307 (456)
103 PF05265 DUF723: Protein of un 20.1 72 0.0016 26.6 1.8 18 408-426 28-45 (60)
104 PRK14315 glmM phosphoglucosami 20.0 1.4E+02 0.003 32.3 4.5 14 407-422 175-188 (448)
No 1
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=100.00 E-value=1.2e-211 Score=1629.75 Aligned_cols=449 Identities=92% Similarity=1.436 Sum_probs=443.2
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH
Q 009728 69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (527)
Q Consensus 69 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~ 148 (527)
..|+|+|||++|++|||+|||+++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|+||++++|+
T Consensus 18 ~~W~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~LA~va~G~AFlLQgGDCAE~F~~~~~~~ir 97 (474)
T PLN02291 18 KKWSPDSWRSKKALQLPEYPDQAELEEVLKTLEAFPPLVFAGEARSLEERLAEAAMGRAFLLQGGDCAESFKEFNANNIR 97 (474)
T ss_pred CCCChhhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhcCCeEEEeCCchhhhhhhhCHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHH
Q 009728 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (527)
Q Consensus 149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa 228 (527)
+|+++|+|||.||+|++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||+
T Consensus 98 ~k~~~llqMa~vL~~~~~~PVVkVGRiAGQyAKPRSs~~E~~dGv~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~Sa 177 (474)
T PLN02291 98 DTFRVLLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRRPDPQRMVRAYSQSA 177 (474)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCCHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccc
Q 009728 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE 308 (527)
Q Consensus 229 atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE 308 (527)
+|||+||||..|||||||++++||++|+++++.+++|++++++|++||+||++||++.+...+++++||||||||||+||
T Consensus 178 atlnllRa~~~gg~adl~~~~~W~~~fv~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~~~l~~~~~yTSHEaLlL~YE 257 (474)
T PLN02291 178 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAACGLTTDHPIMTTTEFWTSHECLLLPYE 257 (474)
T ss_pred HHHHHHHHHhcCCchhhccccccchhhhccCchhhHHHHHHHHHHHHHHHHHHcCCCccccccccCceeechHhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999988557899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (527)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm 388 (527)
+||||.|+.+|+|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||
T Consensus 258 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~Rm 337 (474)
T PLN02291 258 QALTREDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVRM 337 (474)
T ss_pred hhhhccCCCCCCcccccccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009728 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 468 (527)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VT 468 (527)
||+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||
T Consensus 338 Ga~kV~~~LP~Li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHLElTG~dVT 417 (474)
T PLN02291 338 GAEKLRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 417 (474)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhhhcc
Q 009728 469 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRISS 517 (527)
Q Consensus 469 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~~~~~~ 517 (527)
||+||+..++|+||..||+|+||||||++|||||||+||++|+++|...
T Consensus 418 EC~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~~~~ 466 (474)
T PLN02291 418 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRIRS 466 (474)
T ss_pred eeCCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999998877654
No 2
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=100.00 E-value=1e-211 Score=1623.85 Aligned_cols=443 Identities=63% Similarity=1.076 Sum_probs=439.0
Q ss_pred CCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHH
Q 009728 71 WTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDT 150 (527)
Q Consensus 71 Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k 150 (527)
|+|+|||++|++|||+|||+++|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++|
T Consensus 1 w~p~sWr~~pa~QqP~y~D~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~aFlLQgGDCAE~F~~~~~~~i~~k 80 (443)
T TIGR01358 1 WSPQSWRSKPAAQQPTYPDAGALEAVLDTLRSLPPLVFAGEIRRLKRQLAQVAEGEAFLLQGGDCAESFKDCTADHIRNK 80 (443)
T ss_pred CCchhhhcCccccCCCCCCHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhCCCEEEEeCccccCchhhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHHHH
Q 009728 151 FRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAAT 230 (527)
Q Consensus 151 ~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Saat 230 (527)
+++|+|||+||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||+||++|
T Consensus 81 ~~~llqMa~vl~~~~~~PVVkVGRiAGQyAKPRS~~~E~~~G~~LPsYRGD~VN~~e~t~~aR~PDP~Rll~aY~~saat 160 (443)
T TIGR01358 81 LRVLLQMAVVLTYGASLPVVKVGRIAGQYAKPRSAPTETRDGVTLPSYRGDIINGPAFTEAARVPDPRRLVRAYHQSAAT 160 (443)
T ss_pred HHHHHHHHHHHhhcCCCCeEEecccccccCCCCCCCcccCCCEeccccCCccccCcCCChhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccc
Q 009728 231 LNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQS 310 (527)
Q Consensus 231 Ln~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~a 310 (527)
||+||||..|||||||++++||++|+++++.+++|++++++|++||+||++||++.++ .+++++||||||||||+||+|
T Consensus 161 ln~lRa~~~gg~adl~~~~~W~~~f~~~~~~~~~y~~la~~i~~al~fm~a~g~~~~~-~l~~~~~~TSHEaLlL~YE~a 239 (443)
T TIGR01358 161 LNLVRALTTGGYADLHQVHYWNLEFVGYSPAGARYEKLASEIDEALRFMSACGLAPRY-NLQTVEFYTSHEALLLPYEEA 239 (443)
T ss_pred HHHHHHHhcCCchhhcccchhhhhhhhcCchhhHHHHHHHHHHHHHHHHHHcCCCccc-ccCcCceeechHhhccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999886 688999999999999999999
Q ss_pred cccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccCh
Q 009728 311 LTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGA 390 (527)
Q Consensus 311 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa 390 (527)
|||.|+.+|+|||||||||||||||||+|||||||||||+|||||||||+|+||||++||++|||+|+|||||||+||||
T Consensus 240 ltR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~RmGa 319 (443)
T TIGR01358 240 LTRVDSRSGGWFDLSAHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISRMGA 319 (443)
T ss_pred hhcccCCCCCcccccccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009728 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTEC 470 (527)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTEC 470 (527)
+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||||
T Consensus 320 ~kV~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHlE~Tg~dVTEC 399 (443)
T TIGR01358 320 DKIADKLPPLLRAVKAAGRRVVWVCDPMHGNTEEAASGYKTRRFDDIRSEVKGFFEVHRAEGTHPGGVHLELTGEDVTEC 399 (443)
T ss_pred hHHHHhHHHHHHHHHHcCCceEEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 471 IGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 471 vGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
+||+..++++||.+||+|+||||||++|||||||+||++|++.|
T Consensus 400 ~Gg~~~i~e~dL~~rY~T~CDPRLN~~QsLelaf~va~~l~~~~ 443 (443)
T TIGR01358 400 LGGAREITETDLASRYETACDPRLNAEQSLELAFLVAEKLRDVR 443 (443)
T ss_pred CCCccccCcchhhhccccCCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999997653
No 3
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=100.00 E-value=2.6e-206 Score=1582.11 Aligned_cols=438 Identities=62% Similarity=1.078 Sum_probs=356.9
Q ss_pred CCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHH
Q 009728 70 KWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD 149 (527)
Q Consensus 70 ~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~ 149 (527)
+|+|+|||++|++|||.|||+.+|+.|+++|+++||||+++||++||++||+||+|+|||||||||||+|+||++++|++
T Consensus 1 ~W~p~sWr~~pa~QqP~ypD~~~L~~v~~~L~~~PPLV~~~Ei~~Lr~~La~va~G~AFlLQgGDCAEsF~e~~~~~I~~ 80 (439)
T PF01474_consen 1 EWSPSSWRSKPAAQQPEYPDPDALAEVLAKLASLPPLVFAGEIRRLREQLADVARGEAFLLQGGDCAESFAECTADHIRD 80 (439)
T ss_dssp ---HHHHHTS--SS---S-HHHHH-HHHHHHTTS--SS-HHHHHHHHHHHHHHHTTSSEEEEEEESS--STT-SHHHHHH
T ss_pred CCChhhHHhCCcccCCCCcCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHcCCeEEEeCCCcccChhhcChHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHHH
Q 009728 150 TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAA 229 (527)
Q Consensus 150 k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Saa 229 (527)
|+++|+|||.||++++++|||||||||||||||||+++|++||++||||||||||+++||+++|+|||+|||+||++|++
T Consensus 81 k~~~Llqma~vL~~~~~~PVVrVGRiAGQyAKPRS~~~E~vdG~~LPsyRGD~VN~~~~~~~aR~PDP~RlL~aY~~Saa 160 (439)
T PF01474_consen 81 KFKLLLQMALVLTYGAGKPVVRVGRIAGQYAKPRSSPTETVDGVELPSYRGDIVNGPEFTPEARRPDPQRLLRAYFHSAA 160 (439)
T ss_dssp HHHHHHHHHHHHHHHHTS-EEEEEEBSS------S-SB----TTSSB----TTTS-SSSSHHHHS--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEechhhhcccCCCCCCccCCCCccCcccccccccCCCCChhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCC-CCCCCccceeecccccccccc
Q 009728 230 TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVD-HPIMTTTEFWTSHECLLLPYE 308 (527)
Q Consensus 230 tLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~-~~~~~~~~~~tSHEaLlL~YE 308 (527)
|||+||+|++||||||+++++||++|+++++.+++|++|+++|++||+||++||++.+ .+.+.+++||||||||||+||
T Consensus 161 tLn~lRa~~~~G~Adl~~~~~W~~~fv~~s~~~~~y~~~~~~i~~al~Fm~a~g~~~~~~~~~~~~~~~tSHEaLlL~YE 240 (439)
T PF01474_consen 161 TLNLLRAFASGGFADLHHVHQWNLDFVRNSPLGERYEELADEIDDALRFMRACGVDSDSSPALRTVDFYTSHEALLLDYE 240 (439)
T ss_dssp HHHHHHHHHTSCCG-HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTT-----GGGST---EEEEEE---HHHH
T ss_pred HHHHHHHHhcCChhhhcccccchhhhhcCChhhhHHHHHHHHHHHHHHHHHHcCCCccccccccccccccchHHhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999976 667899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (527)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm 388 (527)
+||||.|+.+|.||+|||||+||||||||+|||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+||
T Consensus 241 ~altR~d~~~g~~y~~SaH~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~Rm 320 (439)
T PF01474_consen 241 EALTRQDSDTGRWYNTSAHFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITRM 320 (439)
T ss_dssp HHTEEEESSSEEEEETT-SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE--
T ss_pred hhhccccCCCCCccccccceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009728 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 468 (527)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VT 468 (527)
|+++|+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+|||||||||||||||
T Consensus 321 Ga~~v~~~LP~li~aV~~~g~~vvW~cDPMHGNT~~~~~G~KTR~f~~i~~Ev~~ff~ih~~~g~~~gGvHlE~Tg~~VT 400 (439)
T PF01474_consen 321 GADKVRERLPPLIEAVQAAGHPVVWSCDPMHGNTITTSSGYKTRHFDDILAEVRGFFEIHRAEGTHPGGVHLEMTGDDVT 400 (439)
T ss_dssp -TTTHHHHHHHHHHHHHTTT---EEEE-TSTTSEEE-TTSSEEEBHHHHHHHHHHHHHHHHHHT--EEEEEEEB-SS---
T ss_pred CcHHHHHHhHHHHHHHHHCCCceEEeccCCCCCceECCCCccCCcHHHHHHHHHHHHHHHHHcCCccCceeEEecCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHH
Q 009728 469 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIA 507 (527)
Q Consensus 469 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia 507 (527)
||+||++.++++||..||+|+||||||++|||||||+||
T Consensus 401 EC~gg~~~~~~~dL~~~Y~t~CDPRLN~~Qslelaf~iA 439 (439)
T PF01474_consen 401 ECVGGAEGLSEEDLGRRYETLCDPRLNAEQSLELAFLIA 439 (439)
T ss_dssp -SBBTTTTB-TTGGGSS---SSS--B-HHHHHHHHHHHH
T ss_pred eeCCCCCcCChhhccccccCCCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997
No 4
>COG3200 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-204 Score=1531.82 Aligned_cols=443 Identities=62% Similarity=1.070 Sum_probs=438.7
Q ss_pred CCCCccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHH
Q 009728 69 QKWTVDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIR 148 (527)
Q Consensus 69 ~~Wsp~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~ 148 (527)
..|+|.||++||++|||+|||..+|..|.++|+++|||||++|+++||++||+||.|+|||||||||||||.++++++||
T Consensus 3 ~~w~p~swr~kpi~Q~p~ypd~~~l~~v~a~L~~~PplvfAgEar~Lk~~LA~Va~g~AfLLQgGDCAEsf~~~~a~~Ir 82 (445)
T COG3200 3 TTWLPNSWRAKPIQQQPTYPDAQALARVEARLRSYPPLVFAGEARRLQEQLARVAKGEAFLLQGGDCAESFADHGADNIR 82 (445)
T ss_pred cccCcchhhcCchhcCCCCCCHHHHHHHHHHHhcCCCeeecHHHHHHHHHHHHHhcCceEEEeCCcHHHHHHhcccHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHH
Q 009728 149 DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSA 228 (527)
Q Consensus 149 ~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~Sa 228 (527)
++||+|+|||+||+|++++|||||||||||||||||+++|+++|++|||||||||||.+|++++|.|||+|||+||.+|+
T Consensus 83 d~frvllqMAvVLtfa~~~PVvKVgRIAGQfAKPRSs~~e~~g~vtLpsYRGDiiNG~e~~~~~R~pdP~R~l~aY~qsa 162 (445)
T COG3200 83 DNFRVLLQMAVVLTFAGSRPVVKVGRIAGQFAKPRSSDHEQLGGVTLPSYRGDIINGIEFDAEAREPDPERLLKAYAQSA 162 (445)
T ss_pred HHHHHHHHHHHHHHhccCCceEEeeeecccccCCCCCchhccCCeeccccccccccCccCChhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccc
Q 009728 229 ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYE 308 (527)
Q Consensus 229 atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE 308 (527)
+|||+||||+.||||||+.+|+||++||++|+++++|++|+++|+++|+||++||++. .+.+++++||||||||||+||
T Consensus 163 AtlNLlRafa~gG~A~L~~vh~W~l~Fv~~sp~~~rY~~la~~I~~~l~FM~A~Gv~~-~~~lre~~~ytSHEaLLL~YE 241 (445)
T COG3200 163 ATLNLLRAFASGGLADLENVHRWNLGFVKNSPQGARYEALADRISETLAFMRACGVTN-DPSLRETEFYTSHEALLLDYE 241 (445)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCC-CcccccccchhhhHHHhhhhH
Confidence 9999999999999999999999999999999999999999999999999999999987 457899999999999999999
Q ss_pred cccccccCCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728 309 QSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (527)
Q Consensus 309 ~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm 388 (527)
+||||.|+.+|.||+|||||+||||||||+|||||||+|||.|||||||||+|+||+|++||++|||+|+|||||||.||
T Consensus 242 eam~R~ds~s~~~Yd~SaHmlWIGeRTRq~D~AHVe~~rgv~NPig~K~GP~~~~d~ll~l~d~LnP~nepGRLtLi~Rm 321 (445)
T COG3200 242 EAMLRLDSTSGQWYDTSAHMLWIGERTRQPDGAHVEFLRGVKNPIGVKIGPSMTPDELLELIDRLNPHNEPGRLTLIARM 321 (445)
T ss_pred HHHhhhccCCCceeccccceeeecccccCCChhHHHHHHhcCCccccccCCCCCHHHHHHHHHhcCCCCCCceEEeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009728 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 468 (527)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VT 468 (527)
|++||.++||+||+||+++||+|||+||||||||+++++|||||+|+.|++||++||+||+++|+|||||||||||+|||
T Consensus 322 G~dKV~d~LP~li~av~~eG~~VvWs~DPMHGNTi~a~~gyKTR~fd~Il~EV~sFfeihraeG~hpgGiHlEmTg~dVT 401 (445)
T COG3200 322 GADKVGDRLPPLVEAVEAEGHQVIWSSDPMHGNTIKASTGYKTRPFDRILDEVQSFFEIHRAEGTHPGGIHLEMTGEDVT 401 (445)
T ss_pred cchHHhhhhhHHHHHHHHcCCceEEecCCCCCceeecCCCCccccHHHHHHHHHHHHHHHHhccCCCCceEEEecCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009728 469 ECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 512 (527)
Q Consensus 469 ECvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~ 512 (527)
||+||++.++++||+.||+|+||||||++|||||||+|||+|++
T Consensus 402 EC~gga~~it~~~L~~rY~T~CDPRLNa~QaLELAflvAe~lk~ 445 (445)
T COG3200 402 ECLGGARAITETDLSDRYHTHCDPRLNADQALELAFLVAEMLKK 445 (445)
T ss_pred hhccCcccccccccccchhccCCCCcCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999974
No 5
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=96.75 E-value=0.018 Score=60.95 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=125.7
Q ss_pred CcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHH-HHhCCCCCCC-----c-----------E
Q 009728 320 LYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLI-EILNPQNKPG-----R-----------I 382 (527)
Q Consensus 320 ~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~~pG-----R-----------L 382 (527)
.|+.==--|+|||-||-+ +-.|.++++|+.-|||+|=|.+.+.++.+.-+ ..=+|+.-.| + .
T Consensus 151 ~y~~dlvs~~~IGARt~e-sq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~~~ 229 (349)
T PRK09261 151 QYIADLISWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASAPHHFLGITKDGRSAIVSTTGNPDC 229 (349)
T ss_pred HHHHhhcceeeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhCCceeeecCCCCcEEEEECCCCCCE
Confidence 344434678999999998 79999999999999999999999999977665 2335554333 3 3
Q ss_pred EEEeccCh---hHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccce
Q 009728 383 TIITRMGA---ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVH 459 (527)
Q Consensus 383 TLI~RmGa---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlH 459 (527)
-||-|-|. .--++.+=.....+++.|.+.-=|.||=|||..+. -+.=-.|+.+|...... -....=||-
T Consensus 230 hlilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~ns~k~-----~~~Q~~V~~~v~~qi~~---G~~~I~GvM 301 (349)
T PRK09261 230 HVILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHANSGKD-----HKRQPEVARDVAAQIAA---GNKAIIGVM 301 (349)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcccCcc-----hhhhHHHHHHHHHHHHc---CCccceEEE
Confidence 45667552 11334555667778888999889999999998543 23333455555554432 222355999
Q ss_pred eeecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009728 460 LEMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKR 513 (527)
Q Consensus 460 LE~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~ 513 (527)
+|.- =.+|.+.++. ..+| .|--||=++-+...+|...+|+.++.+
T Consensus 302 iES~------l~~G~Q~~~~---~l~yG~SITD~Ci~w~~T~~ll~~la~~~~~~ 347 (349)
T PRK09261 302 IESH------LVEGNQDLPP---KLVYGQSITDACIGWEDTEALLRELAEAVRAR 347 (349)
T ss_pred EEEe------cCcCCcCCCC---CCCCCcccccCCCChHHHHHHHHHHHHHHHHh
Confidence 9965 2467777755 3455 588899999999999999999999753
No 6
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=96.72 E-value=0.031 Score=59.25 Aligned_cols=179 Identities=20% Similarity=0.234 Sum_probs=125.9
Q ss_pred cccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcE-----------E
Q 009728 321 YYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRI-----------T 383 (527)
Q Consensus 321 ~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRL-----------T 383 (527)
|+.==-.|.+||-||-+ +--|.++++|+.-|||+|=|.+.+.++.+.-+.. =+|+. +-|+. -
T Consensus 153 y~~Dlvs~~aIGARt~e-sq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~~H~fl~~~~~G~~~iv~t~GN~~~h 231 (353)
T PRK12755 153 YLGDLISWGAIGARTTE-SQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQPHRFLGINQEGQVALLETRGNPDGH 231 (353)
T ss_pred HHHhhhhheeeccchhc-CHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhCCCeeeeeCCCCcEEEEECCCCCCEE
Confidence 33333557789999998 7999999999999999999999999998876532 34443 33333 4
Q ss_pred EEeccCh---hHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCcccee
Q 009728 384 IITRMGA---ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHL 460 (527)
Q Consensus 384 LI~RmGa---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHL 460 (527)
||-|-|. .--++.+=.....+.++|.+.-=|.||=|||..+- -+.=-.|..+|..... +-.+..=||-+
T Consensus 232 liLRGg~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns~K~-----~~~Q~~V~~~v~~qi~---~G~~~I~GvMi 303 (353)
T PRK12755 232 VILRGGKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANSGKD-----YRRQPAVAEDVVAQIA---AGNRSIIGVMI 303 (353)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCccccccc-----hhhhHHHHHHHHHHHH---cCCCceEEEEE
Confidence 5566552 12335555667778899999999999999997543 3333455666655543 22234678988
Q ss_pred eecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhhh
Q 009728 461 EMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKRRI 515 (527)
Q Consensus 461 E~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~~ 515 (527)
|.- =.+|.+.+.+. =..+| .|--||=++-++..++...+|+.++.++.
T Consensus 304 ES~------l~~G~Q~~~~~-~~l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r~~ 352 (353)
T PRK12755 304 ESH------LEEGNQSSPPL-SELKYGVSITDACIGWETTEALLRELAQALRARRA 352 (353)
T ss_pred EEe------ccccCcCCCCC-CCCcCCCccccccCChHHHHHHHHHHHHHHHHHhc
Confidence 864 24667665321 01355 58889999999999999999999987653
No 7
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=96.09 E-value=0.12 Score=54.88 Aligned_cols=168 Identities=21% Similarity=0.286 Sum_probs=111.4
Q ss_pred ceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHH-HHhCCCC-----CCCc-----------EEEEeccCh
Q 009728 328 FLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLI-EILNPQN-----KPGR-----------ITIITRMGA 390 (527)
Q Consensus 328 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~-~~LnP~~-----~pGR-----------LTLI~RmGa 390 (527)
|.|||-||-+ .--|-|+.+|+.-|||.|=|...+.++.+.-+ ..=+|+. .-|+ .-||-|-|.
T Consensus 154 w~aIGARt~e-sq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~ 232 (344)
T TIGR00034 154 WGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAAAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGK 232 (344)
T ss_pred hccccCcccc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEecCCC
Confidence 5599999976 35899999999999999999999999988654 3334443 2333 456667552
Q ss_pred h--HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhC-CcCccceeeecCCCc
Q 009728 391 E--NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEG-SHPGGVHLEMTGQNV 467 (527)
Q Consensus 391 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~G-s~~GGlHLE~Tg~~V 467 (527)
. .-+..+-......+++|.+.--|+||=|||..+.- +.=-.+..+|-.... .| ...=||-+|.--+
T Consensus 233 ~pNy~~~di~~~~~~l~~~~lp~~vmVD~SH~ns~k~~-----~~q~~va~~v~~qi~----~G~~~I~GvMiES~l~-- 301 (344)
T TIGR00034 233 KPNYSAADVAAAKKQLEKAGLPPHLMIDFSHGNSNKDH-----RRQPDVAEDVCEQIA----NGSKAIIGVMIESNLV-- 301 (344)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCeEEEeCCCcccccch-----hhhHHHHHHHHHHHH----cCCccceEEEEEecCC--
Confidence 1 11123334445557899998889999999975442 222233444433332 33 2356898885432
Q ss_pred ccccCCCCCCC-cccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009728 468 TECIGGSRTVT-FDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKR 513 (527)
Q Consensus 468 TECvGG~~~~~-e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~ 513 (527)
.|.+.+. ..+ .+| .|--||=++-++..+|...+|+.++.+
T Consensus 302 ----~G~Q~~~~~~~--l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r 343 (344)
T TIGR00034 302 ----EGNQSIPGGQP--LKYGQSITDACIGWEDTEALLRQLADAVRTR 343 (344)
T ss_pred ----cCCCCCCCCCc--CcCCCcCccccCChHHHHHHHHHHHHHHHhc
Confidence 3444431 112 244 588899999999999999999988754
No 8
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=94.77 E-value=0.5 Score=50.28 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=119.4
Q ss_pred eeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccCh--
Q 009728 330 WVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRIT-----------IITRMGA-- 390 (527)
Q Consensus 330 WIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRLT-----------LI~RmGa-- 390 (527)
+||-||-+ .--|-|+.+|+.-|||+|=|...+.+..+.-+.. =+|+. .-|+.. +|-|=|.
T Consensus 160 aIGARt~e-sq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~P 238 (348)
T PRK12756 160 AIGARTTE-SQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKP 238 (348)
T ss_pred hhcccccc-CHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCC
Confidence 59999987 4569999999999999999999998887765544 45664 444444 4455441
Q ss_pred hHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009728 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTEC 470 (527)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTEC 470 (527)
.--.+.+-...++.+++|.+.--|.|==|||. |-+-+.=-.|++||-.... +-....-||-||- -=
T Consensus 239 NY~~~~v~~a~~~l~~~~l~~~imVDcSH~NS-----~K~~~~Q~~V~~~v~~qi~---~g~~~I~GvMiES------~L 304 (348)
T PRK12756 239 NYHAEDIAAACDTLREFDLPEHLVVDFSHGNC-----QKQHRRQLDVAEDICQQIR---NGSTAIAGIMAES------FL 304 (348)
T ss_pred CCCHHHHHHHHHHHHHCCCCCcEEEECCCccc-----CCCHHHHHHHHHHHHHHHH---cCCCeEEEEEEee------cc
Confidence 11223333456778899999999999999997 4445666677777765554 3445678998883 23
Q ss_pred cCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHh
Q 009728 471 IGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKR 513 (527)
Q Consensus 471 vGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~ 513 (527)
.+|.+.+. +.-..+| .|--||=++-++..++...+|+.++.+
T Consensus 305 ~~G~Q~~~-~~~~l~yG~SITD~Ci~W~~T~~ll~~la~a~~~r 347 (348)
T PRK12756 305 REGTQKIV-AGQPLTYGQSITDPCLGWEDTERLLELLAAAVDSR 347 (348)
T ss_pred cccCCCCC-CCCCCcCCCcccccccCHHHHHHHHHHHHHHHHhh
Confidence 45666651 1112355 588899999999999999999998754
No 9
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=94.58 E-value=0.79 Score=49.00 Aligned_cols=171 Identities=22% Similarity=0.238 Sum_probs=122.4
Q ss_pred ceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEE-----------EEeccCh
Q 009728 328 FLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRIT-----------IITRMGA 390 (527)
Q Consensus 328 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRLT-----------LI~RmGa 390 (527)
|.+||-||-+ .--|-++.+|+.-|||+|=|...+.+..+.-+.. =+|+. .-|+.. +|-|=|.
T Consensus 159 w~aIGARt~e-sq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~ 237 (356)
T PRK12822 159 WGAIGARTTE-SQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGR 237 (356)
T ss_pred hhhhccchhc-CHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCC
Confidence 4599999987 5689999999999999999999999988765544 46764 455553 4556441
Q ss_pred h--HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcc
Q 009728 391 E--NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVT 468 (527)
Q Consensus 391 ~--~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VT 468 (527)
. --.+.+-...+..+++|.+.--|.|==|||.. -+-+.=-.|+.||-.... +-....=||-||-
T Consensus 238 ~PNY~~~~v~~a~~~l~~~~l~~~vmVDcSH~NS~-----K~~~~Q~~V~~~v~~q~~---~g~~~I~GvMiES------ 303 (356)
T PRK12822 238 EPNYGLSDVTKASKLLHDEGLNHRLIIDCSHGNSQ-----KVAKNQISVARELCDQLK---EGEGAIAGVMVES------ 303 (356)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcEEEECCCccCC-----CCHHHHHHHHHHHHHHHH---CCCCeEEEEEEee------
Confidence 0 11223334667788999999999999999974 444555667777765554 3345577998883
Q ss_pred cccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhhh
Q 009728 469 ECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKRRI 515 (527)
Q Consensus 469 ECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~~ 515 (527)
--.+|.+.+...+ .+| .|--||=++-+...++...+|+.++.+++
T Consensus 304 ~L~~G~Q~~~~~~--l~yG~SITD~Ci~W~~T~~ll~~la~~~~~r~~ 349 (356)
T PRK12822 304 FLQGGSQKADSAP--LEYGQSVTDECLSWQDTEQLLNTLAEAVETRRQ 349 (356)
T ss_pred cccccCCCCCCCC--CcCCCccchhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 2345665533223 345 58889999999999999999999987544
No 10
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=93.90 E-value=0.047 Score=55.64 Aligned_cols=148 Identities=21% Similarity=0.233 Sum_probs=98.2
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCC-CCC--cEEEEeccCh--hHHHhhChHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQN-KPG--RITIITRMGA--ENMRVKLPHL 400 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pG--RLTLI~RmGa--~~v~~~LP~L 400 (527)
.-++|||-||=+ +-.|.+.+.+..-||++|=|..+++++.+.-.+.+-=.. ..| =--.|.|+|. .+...-+-.+
T Consensus 108 vd~lqIgAr~~~-n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 108 VDWLQIGARLME-NQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp ESEEEE-GGGTT-CHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred CcEEEECcchhc-CHHHHHHhccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 559999999977 789999999999999999999999999998888753222 122 1245788887 5555556667
Q ss_pred HHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccccCCCCCCCcc
Q 009728 401 IRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFD 480 (527)
Q Consensus 401 I~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECvGG~~~~~e~ 480 (527)
...-+.++.|| ++||=|+|..+. |.+.- .|..-+++. -+.| .=||-+|.-.+. +
T Consensus 187 ~~~~~~~~lpV--ivD~SH~~~~~~--~~~q~---~V~~~a~aa----ia~G--idGlmiEsH~~p--~----------- 240 (270)
T PF00793_consen 187 PIMKKKTHLPV--IVDPSHANSRKD--GGRQE---LVPPLARAA----IAAG--IDGLMIESHPDP--G----------- 240 (270)
T ss_dssp HHHHHHTSSEE--EEEHHHHTTTCG--GGGHC---GHHHHHHHH----HHHT--ESEEEEEEESSG--G-----------
T ss_pred HHHHHhcCCCE--EECchhhhcccc--CCchh---hHHHHHHHH----Hhhc--CCEEEEeecCCc--c-----------
Confidence 77777776766 589999998655 22221 233333322 2345 889999864332 1
Q ss_pred ccccccccCCCC--CCChHhHHHHHHHH
Q 009728 481 DLSSRYHTHCDP--RLNASQSLELAFII 506 (527)
Q Consensus 481 dL~~rY~T~CDP--RLN~~QsLelaf~i 506 (527)
+..||+ -|.+.|+.++.-..
T Consensus 241 ------~a~~d~~~~l~~~~~~~~~~~~ 262 (270)
T PF00793_consen 241 ------KALSDGPQQLTYGQSITLLCIL 262 (270)
T ss_dssp ------GTSSSGGGSEEGGGHHHHHHHH
T ss_pred ------cCCCCCccCCCcchhHHHHHHH
Confidence 244553 36777777765543
No 11
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=93.11 E-value=0.18 Score=52.40 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=63.2
Q ss_pred CCceeeccccCCCCchhHHHh---hhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChH
Q 009728 326 AHFLWVGERTRQLDGAHVEFL---KGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPH 399 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVefl---rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~ 399 (527)
..++|||-|.=|- -++| .+...||=||=|..++|+|.+..++.+.-...+ +|.|+-| ||..+.---+-.
T Consensus 107 ~DilQIgAr~~rq----tdLL~a~~~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~-~viLcERG~tFgy~~lv~D~r~ 181 (290)
T PLN03033 107 ADIIQIPAFLCRQ----TDLLVAAAKTGKIINIKKGQFCAPSVMRNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPRN 181 (290)
T ss_pred CcEEeeCcHHHHH----HHHHHHHHccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh
Confidence 4899999998642 5566 677899999999999999999999998755544 7777766 465533111111
Q ss_pred HHHHHHHcCCceEEEcCCCCC
Q 009728 400 LIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 400 LI~AV~~aG~~ViW~cDPMHG 420 (527)
|-.++..+.||| +||=|+
T Consensus 182 -ip~mk~~~lPVI--~DpSHs 199 (290)
T PLN03033 182 -LEWMREANCPVV--ADITHS 199 (290)
T ss_pred -hHHHHhcCCCEE--EeCCcc
Confidence 123356899995 899995
No 12
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.06 E-value=0.73 Score=46.98 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=65.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec----c-ChhHHHhhChHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR----M-GAENMRVKLPHL 400 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R----m-Ga~~v~~~LP~L 400 (527)
.-++|||=|+=+ +-.+++.+++..-||++|=|...+++|++.-++.+--... ..+.|+-| + +...-.-.|-.
T Consensus 111 vd~~kIga~~~~-n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn-~~i~L~~rG~~t~~~Y~~~~vdl~~- 187 (266)
T PRK13398 111 ADMLQIGSRNMQ-NFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN-ENVVLCERGIRTFETYTRNTLDLAA- 187 (266)
T ss_pred CCEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC-CeEEEEECCCCCCCCCCHHHHHHHH-
Confidence 458999999876 5679999999999999999999999999999999842222 26999998 3 33322222222
Q ss_pred HHHHH-HcCCceEEEcCCCCCCc
Q 009728 401 IRAVR-RSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 401 I~AV~-~aG~~ViW~cDPMHGNT 422 (527)
|...+ ..+.||+ +||=|+|.
T Consensus 188 i~~lk~~~~~pV~--~D~sHs~G 208 (266)
T PRK13398 188 VAVIKELSHLPII--VDPSHATG 208 (266)
T ss_pred HHHHHhccCCCEE--EeCCCccc
Confidence 33333 4477765 56779984
No 13
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=90.18 E-value=1.1 Score=46.00 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLIR 402 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~LI~ 402 (527)
..++|||-|.=|= -.=+.-+.+..-||=||=|..++|+|.+-.++.+.-...+ +|.|+-| ||..+.---+-. |-
T Consensus 93 vDilQIgArn~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~-~viLcERG~tf~y~r~~~D~~~-ip 169 (258)
T TIGR01362 93 VDIIQIPAFLCRQ-TDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNK-NILLCERGTSFGYNNLVVDMRS-LP 169 (258)
T ss_pred CcEEEeCchhcch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCcCCCCcccchhh-hH
Confidence 6799999987441 2233334445689999999999999999999998655443 6777655 555432111111 22
Q ss_pred HHHHcCCceEEEcCCCCC
Q 009728 403 AVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 403 AV~~aG~~ViW~cDPMHG 420 (527)
.+++.|.||| +||=|+
T Consensus 170 ~~k~~~~PVi--~DpSHs 185 (258)
T TIGR01362 170 IMRELGCPVI--FDATHS 185 (258)
T ss_pred HHHhcCCCEE--EeCCcc
Confidence 3355688885 899996
No 14
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=89.98 E-value=0.77 Score=47.91 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCc-EEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCC
Q 009728 358 SDKMDPNELVKLIEILNPQNKPGR-ITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN 421 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~pGR-LTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN 421 (527)
|+.++++||.+|.+-|--+|--+= -.|-.=.|.-..-+..-.+|+++++..-+++|+|||.=|.
T Consensus 59 G~~~~~~eL~dL~egl~~nn~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGD 123 (308)
T KOG2599|consen 59 GQVLNEEELEDLYEGLLLNNLNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGD 123 (308)
T ss_pred ccccCHHHHHHHHHHHhhccccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccC
Confidence 899999999999999854443211 1122334444555667789999999999999999999885
No 15
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.75 E-value=1.1 Score=47.78 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-----c-ChhHHHhhChH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-----M-GAENMRVKLPH 399 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R-----m-Ga~~v~~~LP~ 399 (527)
.-++|||-|.=| +-..++.+....-||-+|=|..+|++|+..-++.+--... .+|.|.-| - +.-+-.--|-.
T Consensus 185 ~d~lqIga~~~~-n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn-~~viL~erG~rtf~s~y~~~~~dl~a 262 (352)
T PRK13396 185 ADVIQVGARNMQ-NFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAAGN-PNVILCERGIRTFDRQYTRNTLDLSV 262 (352)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEecCCccCcCCCCCCCcCHHH
Confidence 578999999877 5778889999999999999999999999999999953333 37999988 3 43322222333
Q ss_pred HHHHHHH-cCCceEEEcCCCCC
Q 009728 400 LIRAVRR-SGQIVTWVSDPMHG 420 (527)
Q Consensus 400 LI~AV~~-aG~~ViW~cDPMHG 420 (527)
+ ..+++ .+.|| +|||-|+
T Consensus 263 i-~~lk~~~~lPV--i~DpsH~ 281 (352)
T PRK13396 263 I-PVLRSLTHLPI--MIDPSHG 281 (352)
T ss_pred H-HHHHHhhCCCE--EECCccc
Confidence 3 33344 47776 5999997
No 16
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=88.66 E-value=1.8 Score=45.82 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-----ChhHHHhhChHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM-----GAENMRVKLPHL 400 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm-----Ga~~v~~~LP~L 400 (527)
.-++|||-|+=| +-.|++.+.+..-||.+|=|..++.+|++.-++.+--... .++.|+-|- +..+-.--|-.+
T Consensus 177 vd~lqIgAr~~~-N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN-~~viL~erG~~tf~~~~~~~ldl~ai 254 (335)
T PRK08673 177 VDILQIGARNMQ-NFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAEGN-PNVILCERGIRTFETATRNTLDLSAV 254 (335)
T ss_pred CCeEEECccccc-CHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEECCCCCCCCcChhhhhHHHH
Confidence 358999999877 7889999999999999999999999999999999853322 269999881 333333334444
Q ss_pred HHHHHHcCCceEEEcCCCCCCcc
Q 009728 401 IRAVRRSGQIVTWVSDPMHGNTI 423 (527)
Q Consensus 401 I~AV~~aG~~ViW~cDPMHGNT~ 423 (527)
...-+..+.||+ .||=|++..
T Consensus 255 ~~lk~~~~lPVi--~d~sH~~G~ 275 (335)
T PRK08673 255 PVIKKLTHLPVI--VDPSHATGK 275 (335)
T ss_pred HHHHHhcCCCEE--EeCCCCCcc
Confidence 433344677774 677899654
No 17
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=86.82 E-value=3 Score=43.15 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=61.4
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLIR 402 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~LI~ 402 (527)
..++|||-|.=|= -.=+.=+.+..-||=||=|..++|+|.+-.++.+.-...+ +|.|+-| ||..+.---+- -|-
T Consensus 101 ~DilQIgArn~rn-~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~-~vilcERG~tf~y~r~~~D~~-~vp 177 (264)
T PRK05198 101 VDVLQIPAFLCRQ-TDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREAGND-KIILCERGTSFGYNNLVVDMR-GLP 177 (264)
T ss_pred CcEEEECchhcch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCcCCCCeeechh-hhH
Confidence 7899999987442 2223334455789999999999999999999998655443 6777766 45442211111 123
Q ss_pred HHHHcCCceEEEcCCCCC
Q 009728 403 AVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 403 AV~~aG~~ViW~cDPMHG 420 (527)
.++..+.||| +||=|+
T Consensus 178 ~~k~~~lPVi--~DpSHs 193 (264)
T PRK05198 178 IMRETGAPVI--FDATHS 193 (264)
T ss_pred HHhhCCCCEE--EeCCcc
Confidence 4556788885 899996
No 18
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=85.40 E-value=2 Score=44.63 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhCC--CCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc
Q 009728 358 SDKMDPNELVKLIEILNP--QNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP--~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (527)
|..+.+|++.++++-|+- .+.-=...|..=||...--+.+=.+|++||++.=+++|+|||.=|..
T Consensus 50 g~v~~~e~l~~~l~~l~~~~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~ 116 (281)
T COG2240 50 GIVMPPEQLADLLNGLEAIDKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDP 116 (281)
T ss_pred CcCCCHHHHHHHHHHHHhcccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCC
Confidence 556789999999999875 44444677888899888888899999999999888999999998864
No 19
>PRK05756 pyridoxamine kinase; Validated
Probab=84.75 E-value=2.2 Score=42.61 Aligned_cols=66 Identities=14% Similarity=0.242 Sum_probs=51.9
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCC
Q 009728 356 KVSDKMDPNELVKLIEILNPQNK--PGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN 421 (527)
Q Consensus 356 KvGP~~~p~elv~L~~~LnP~~~--pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN 421 (527)
=.|+.++++++.++++.+.-.+. +....++.=+|.....+.+=.+|+.+++.|..++|+|||.=|.
T Consensus 49 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d 116 (286)
T PRK05756 49 WTGCVMPPSHLTEIVQGIADIGWLGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGD 116 (286)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcccc
Confidence 35788888999999888743222 4557777778888888889999999999888899999998554
No 20
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=83.45 E-value=2.7 Score=41.86 Aligned_cols=61 Identities=18% Similarity=0.353 Sum_probs=50.8
Q ss_pred eCCCCCHHHHHHHHHHhC--CCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCC
Q 009728 357 VSDKMDPNELVKLIEILN--PQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDP 417 (527)
Q Consensus 357 vGP~~~p~elv~L~~~Ln--P~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDP 417 (527)
.|+.++++++.++++.+. -.-.+....++.=++.....+.+=.+++..++.|..++|+|||
T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dp 112 (286)
T TIGR00687 50 TGQVLPPDELTELVDGLAAINKLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDP 112 (286)
T ss_pred cCeECCHHHHHHHHHHHHhcCccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECC
Confidence 688899999999999982 2223667778888888887888889999999988889999999
No 21
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=82.14 E-value=34 Score=36.81 Aligned_cols=183 Identities=21% Similarity=0.262 Sum_probs=120.0
Q ss_pred CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCCC-----CCCcEEE-----
Q 009728 316 STSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPGRITI----- 384 (527)
Q Consensus 316 ~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pGRLTL----- 384 (527)
+.+..|++=-=-|-=||-||-. +--|=|..+|+.=|||-|=|-+-+-.-.+.-+.. =+|+. ..|+..+
T Consensus 147 ~ispqy~aDLiSwgAIGARTtE-SQ~HRe~ASGLs~PvGFKNgTdGnl~vAidAi~AA~~~H~Fl~~~k~G~~aiv~T~G 225 (351)
T COG0722 147 PISPQYLADLISWGAIGARTTE-SQIHRELASGLSCPVGFKNGTDGNLKVAIDAIRAAAHPHHFLSVTKDGQVAIVETSG 225 (351)
T ss_pred cCcHHHHHHHHHHhhccccchh-hHHHHHHhhccCCCccccCCCCccHHHHHHHHHHhhCCceeeecCCCCceEEEEccC
Confidence 3444444322223339999975 6789999999999999999988776665544443 46664 6666654
Q ss_pred ------EeccChh---HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcC
Q 009728 385 ------ITRMGAE---NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHP 455 (527)
Q Consensus 385 ------I~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~ 455 (527)
|-|=|.. -=.+.+-.-++..+++|.+.--|.|==|||.-| +-|.=-+|.+.|- +-...-....
T Consensus 226 Np~~HvILRGG~~~PNYda~~v~~~~~~l~~~gl~~~lmID~SH~NS~K-----~~~~Q~~V~~~v~---~Qi~~G~~~I 297 (351)
T COG0722 226 NPDGHVILRGGKKGPNYDAASVAAACEQLEKAGLPPRLMIDCSHANSGK-----DYRRQPKVARDVC---QQIAAGERAI 297 (351)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEEeccCCcccc-----ChhhhHHHHHHHH---HHHhcCCcee
Confidence 6676632 112223345677889999999999999999744 3344334443332 2222333556
Q ss_pred ccceeeecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 456 GGVHLEMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 456 GGlHLE~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
=||-+|- --..|.+.+... ....| .|--||=|+-+++..|...+++.+++++
T Consensus 298 ~GvMiES------~L~eG~Q~~~~~-~~l~yG~SITDaCigWe~Te~ll~~la~av~~r~ 350 (351)
T COG0722 298 RGVMIES------HLVEGRQDLVQG-QPLKYGVSITDACIGWEDTEALLRELAEAVRARR 350 (351)
T ss_pred EEEEehh------hhhhcCcCCCCC-CCCcCCcccccccCChhhHHHHHHHHHHHHHhhc
Confidence 7887772 223454443322 25566 4888999999999999999999998865
No 22
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=81.37 E-value=6.4 Score=39.40 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=78.3
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH--------HhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCC
Q 009728 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENM--------RVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCG 428 (527)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v--------~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G 428 (527)
|+|.++.+.|.++.+.|+-.++|==|.+|.++...+- ...+=..++.+++.|..|+ |||=|.+..++
T Consensus 9 VsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~-----lHGYtHq~~~~ 83 (243)
T PF10096_consen 9 VSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIV-----LHGYTHQYGNS 83 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEE-----EEecceecCCC
Confidence 6889999999999999999999999999999775555 4566677888889999988 99998877444
Q ss_pred cccc-------------chhHHHHHHHHHHHHHHhhCCcCccc
Q 009728 429 LKTR-------------PFDSIRAEVRAFFDVHEQEGSHPGGV 458 (527)
Q Consensus 429 ~KTR-------------~f~~Il~Ev~~ff~vh~~~Gs~~GGl 458 (527)
..-. .-+...+-|+.-+++..+.|-.|-|+
T Consensus 84 ~sg~~~ef~~~~~~~~~~~~~a~~ri~~gl~~l~~~gi~p~~f 126 (243)
T PF10096_consen 84 VSGDGFEFWDSEFDAGDSEEEAKERIEKGLEILAELGIYPVGF 126 (243)
T ss_pred cccccceeccccccccCCHHHHHHHHHHHHHHHHHCCCcccEE
Confidence 3322 22456666788999999999999886
No 23
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=79.77 E-value=15 Score=38.46 Aligned_cols=90 Identities=21% Similarity=0.292 Sum_probs=62.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLIR 402 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~LI~ 402 (527)
..++|||-|.=|= -.=+.-+..-.-||=||=|..++|+|.+.-++.+-=...+ +|.|+-| ||..+.---+ .-|-
T Consensus 107 vDilQIgAr~~rn-tdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~-~vilcERG~~fgy~~~~~D~-~~ip 183 (281)
T PRK12457 107 ADVLQVPAFLARQ-TDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCREAGND-RVILCERGSSFGYDNLVVDM-LGFR 183 (281)
T ss_pred CeEEeeCchhhch-HHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHcCCC-eEEEEeCCCCCCCCCcccch-HHHH
Confidence 7899999987441 2233444555689999999999999999999998655444 7888755 5555431112 2233
Q ss_pred HHHHc--CCceEEEcCCCCC
Q 009728 403 AVRRS--GQIVTWVSDPMHG 420 (527)
Q Consensus 403 AV~~a--G~~ViW~cDPMHG 420 (527)
.+++. +.||| +||=|+
T Consensus 184 ~mk~~~t~lPVi--~DpSHs 201 (281)
T PRK12457 184 QMKRTTGDLPVI--FDVTHS 201 (281)
T ss_pred HHHhhCCCCCEE--EeCCcc
Confidence 46664 88995 899996
No 24
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.91 E-value=3.7 Score=41.65 Aligned_cols=107 Identities=19% Similarity=0.310 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchh
Q 009728 263 DRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAH 342 (527)
Q Consensus 263 ~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 342 (527)
++-+++.+..-+|-+....+|.| .+++-..|--|+-.+=.+.+-. ++.. |..| +=.|.|.+
T Consensus 134 ~ei~~~i~~~~~aA~~a~~aGfD-------gveih~~~gyL~~qFlsp~~n~--R~d~-yGgs-----~enr~r~~---- 194 (327)
T cd02803 134 EEIEQIIEDFAAAARRAKEAGFD-------GVEIHGAHGYLLSQFLSPYTNK--RTDE-YGGS-----LENRARFL---- 194 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEcchhhhHHHHhcCccccC--CCcc-cCCC-----HHHHHHHH----
Confidence 34556667777777777778876 4578888877776666665421 2222 4323 12566643
Q ss_pred HHHhhhcc-----C-cceeeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 343 VEFLKGVA-----N-PLGIKVSDK------MDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 343 VeflrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
.|-++.|+ + ||+||+.|. .+++|.+++++.|.... ..=|.+..+..
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G-~d~i~vs~g~~ 252 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAG-VDALHVSGGSY 252 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCC
Confidence 34444443 3 999999976 57899999999987554 34555555544
No 25
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=76.56 E-value=7.6 Score=39.46 Aligned_cols=91 Identities=18% Similarity=0.203 Sum_probs=66.2
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-c----ChhHHHhhChHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-M----GAENMRVKLPHL 400 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R-m----Ga~~v~~~LP~L 400 (527)
.-++|||-|+=+ +-.+++.+++..-||.||-|..++++|+...++.+--... .+|.|+-| . +..+-.-.|-.+
T Consensus 109 ~d~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~l~~rG~s~y~~~~~~~~dl~~i 186 (260)
T TIGR01361 109 ADILQIGARNMQ-NFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGN-GNVILCERGIRTFEKATRNTLDLSAV 186 (260)
T ss_pred CCEEEECccccc-CHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEECCCCCCCCCCcCCcCHHHH
Confidence 358999988754 4559999999999999999999999999999999953222 36999988 2 433333334444
Q ss_pred HHHHHHcCCceEEEcCCCCC
Q 009728 401 IRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 401 I~AV~~aG~~ViW~cDPMHG 420 (527)
..--+..+.||++ ||=|.
T Consensus 187 ~~lk~~~~~pV~~--ds~Hs 204 (260)
T TIGR01361 187 PVLKKETHLPIIV--DPSHA 204 (260)
T ss_pred HHHHHhhCCCEEE--cCCCC
Confidence 4333446888875 66686
No 26
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=69.72 E-value=11 Score=36.70 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=48.7
Q ss_pred cCccee-eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHc--CCceEEEcCCC
Q 009728 350 ANPLGI-KVSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRS--GQIVTWVSDPM 418 (527)
Q Consensus 350 ~NPIGv-KvGP~~~p~elv~L~~~LnP~~--~pGRLTLI~RmGa~~v~~~LP~LI~AV~~a--G~~ViW~cDPM 418 (527)
.|+-++ ..||..+++++.++++.+.=.. .+..+.++.=++.....+.+=.+++..++. |.+| ++||-
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~v--v~Dpv 111 (254)
T cd01173 40 NHTGYGTWTGFVLSAEELEDLLEGLEALGLLLEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLY--VCDPV 111 (254)
T ss_pred CCCCCCCCCCeecCHHHHHHHHHHHHHcCCcccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceE--EECCC
Confidence 455566 8899999999888888764322 334677777777778888888888888776 6544 68993
No 27
>PTZ00344 pyridoxal kinase; Provisional
Probab=69.16 E-value=12 Score=37.82 Aligned_cols=64 Identities=14% Similarity=0.294 Sum_probs=46.4
Q ss_pred eeCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCC
Q 009728 356 KVSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMH 419 (527)
Q Consensus 356 KvGP~~~p~elv~L~~~LnP~~--~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMH 419 (527)
=.||..+++++.++++.|.-.. ..-...++.=++...+.+.+=.+++..++.|-.+.++|||-=
T Consensus 52 ~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~ 117 (296)
T PTZ00344 52 IKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVM 117 (296)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCcc
Confidence 3478888988989888885322 233778888888777767666777666667766788899864
No 28
>PLN02978 pyridoxal kinase
Probab=64.72 E-value=13 Score=38.24 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHhCCCCC-CCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCC
Q 009728 359 DKMDPNELVKLIEILNPQNK-PGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 359 P~~~p~elv~L~~~LnP~~~-pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (527)
-.++++++..+++-+...+. --.-.+|.-+|.....+.+-.+++..+..+..+.|+|||-=|
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~ 127 (308)
T PLN02978 65 QVLDGEQLWALIEGLEANGLLFYTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLG 127 (308)
T ss_pred eeCCHHHHHHHHHHHHHcCCcccCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCccc
Confidence 34567888888887765443 245678888998888898999999998888889999999744
No 29
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=62.49 E-value=9.9 Score=41.46 Aligned_cols=87 Identities=20% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHH-------hCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcc-cCCCCccc
Q 009728 360 KMDPNELVKLIEI-------LNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTI-KAPCGLKT 431 (527)
Q Consensus 360 ~~~p~elv~L~~~-------LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~-~~~~G~KT 431 (527)
.+|++|+..+.+. ||....+|.+.=+.=.|-+.- ..-+.+.--|.+.|.+| |||||-- ++.+|
T Consensus 47 GeT~eEi~g~t~Am~~~~~~l~~~~~~~~~vD~~gTGGdG~-~iSt~~a~ivAa~Gv~V-----aKhgnR~lss~~G--- 117 (405)
T TIGR02644 47 GMTDEETAYLTKAMIDSGEVLDLSSLPGPKVDKHSTGGVGD-KVSLVLGPIVAACGVKV-----AKMSGRGLGHTGG--- 117 (405)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccCCCeeEEeCCCCCCC-CchHHHHHHHHhCCCCE-----EeeCCCCCCCcch---
Confidence 4889999888876 443334454444444433321 13445566677899999 6999953 33345
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 432 RPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 432 R~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
..|+.++ .||+.++++.+++.+|+
T Consensus 118 ------------TaD~LE~----lgG~~v~ls~e~~~~~l 141 (405)
T TIGR02644 118 ------------TIDKLES----IPGFRTELSEAEFIEIV 141 (405)
T ss_pred ------------HHHHHHh----cCCCCCCCCHHHHHHHH
Confidence 3344444 47889999999888885
No 30
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=61.72 E-value=11 Score=40.04 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecc-cccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSH-ECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDG 340 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSH-EaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 340 (527)
+-+++.+..-+|-.....+|.| .+++-..| -.|+=.|=++.| |.|. |..| +=.|+|-+
T Consensus 144 eI~~ii~~f~~AA~ra~~AGfD-------gVEih~ah~GyLl~qFLSp~~N~RtDe-----yGGs-----lenR~rf~-- 204 (382)
T cd02931 144 EVETFVGKFGESAVIAKEAGFD-------GVEIHAVHEGYLLDQFTISLFNKRTDK-----YGGS-----LENRLRFA-- 204 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEeccccChHHHHhcCCccCCCCCc-----CCCC-----HHHHhHHH--
Confidence 3445555555566666667775 45888888 445544544444 3343 3222 22577764
Q ss_pred hhHHHhhhccC------cceeeeCC--------------------CCCHHHHHHHHHHhC
Q 009728 341 AHVEFLKGVAN------PLGIKVSD--------------------KMDPNELVKLIEILN 374 (527)
Q Consensus 341 AHVeflrgI~N------PIGvKvGP--------------------~~~p~elv~L~~~Ln 374 (527)
+|-+++|++ |||||+.| ..+++|.+++++.|+
T Consensus 205 --~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~ 262 (382)
T cd02931 205 --IEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILE 262 (382)
T ss_pred --HHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHH
Confidence 788888864 89999986 346677777777774
No 31
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=60.83 E-value=12 Score=39.33 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009728 263 DRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDG 340 (527)
Q Consensus 263 ~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 340 (527)
++-+++.+..-+|-.....+|.| .+++...|--|+=.|=++.+ |.|...|.+- .|+|-+
T Consensus 135 eeI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~RtD~yGGsle----------nR~Rf~-- 195 (337)
T PRK13523 135 EQIKETVLAFKQAAVRAKEAGFD-------VIEIHGAHGYLINEFLSPLSNKRTDEYGGSPE----------NRYRFL-- 195 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCcCCCCCCCHH----------HHHHHH--
Confidence 34455666666666666777875 45889999888877777766 5555444311 466643
Q ss_pred hhHHHhhhccC----cceeeeCC------CCCHHHHHHHHHHhC
Q 009728 341 AHVEFLKGVAN----PLGIKVSD------KMDPNELVKLIEILN 374 (527)
Q Consensus 341 AHVeflrgI~N----PIGvKvGP------~~~p~elv~L~~~Ln 374 (527)
.|-+++|++ ||+||+.+ +.+++|.+++++.|.
T Consensus 196 --~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~ 237 (337)
T PRK13523 196 --REIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMK 237 (337)
T ss_pred --HHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHH
Confidence 344444444 89999998 568888888888885
No 32
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.34 E-value=16 Score=38.91 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-+-...+|.| .+++-..|--|+=.+=++.+ |.|...|.+ =.|+|-+
T Consensus 138 eI~~ii~~f~~AA~~a~~aGfD-------gVeih~ahGyLl~qFLSp~~N~RtDeYGGsl----------enR~Rf~--- 197 (361)
T cd04747 138 DIDDVIAAFARAAADARRLGFD-------GIELHGAHGYLIDQFFWAGTNRRADGYGGSL----------AARSRFA--- 197 (361)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCCCCCCH----------HHHHHHH---
Confidence 4455666666666666667775 46888999888877777777 666544431 2577643
Q ss_pred hHHHhhhccC------cceeeeCC----------CCCHHHHHHHHHHhC
Q 009728 342 HVEFLKGVAN------PLGIKVSD----------KMDPNELVKLIEILN 374 (527)
Q Consensus 342 HVeflrgI~N------PIGvKvGP----------~~~p~elv~L~~~Ln 374 (527)
.|-++.|++ |||||++| ..+++|.++++..|+
T Consensus 198 -~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~ 245 (361)
T cd04747 198 -AEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLV 245 (361)
T ss_pred -HHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHH
Confidence 445555543 89999997 367889989988886
No 33
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=52.83 E-value=5.6 Score=43.24 Aligned_cols=47 Identities=30% Similarity=0.594 Sum_probs=33.9
Q ss_pred ccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCC--cccCCCCcccc------------chhHHHHHHHH
Q 009728 387 RMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN--TIKAPCGLKTR------------PFDSIRAEVRA 443 (527)
Q Consensus 387 RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN--T~~~~~G~KTR------------~f~~Il~Ev~~ 443 (527)
|+||+.+...+|. .-||++|||-+| ++-...|+|++ .|+.++++++.
T Consensus 108 ~~~A~fl~~~~~~----------~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~ 168 (396)
T COG1448 108 RVAADFLARFFPD----------ATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKT 168 (396)
T ss_pred HHHHHHHHHhCCC----------ceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHh
Confidence 5556666555543 339999999999 77778899985 46777777765
No 34
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=52.54 E-value=17 Score=37.99 Aligned_cols=93 Identities=20% Similarity=0.205 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-.....+|.| .++|-..|--||=.|=.+.+ |.|...|. +=.|.|.+
T Consensus 131 eI~~i~~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~RtD~yGGs----------lenR~r~~--- 190 (353)
T cd02930 131 EIEQTIEDFARCAALAREAGYD-------GVEIMGSEGYLINQFLAPRTNKRTDEWGGS----------FENRMRFP--- 190 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCccCCCcCccCCC----------HHHHhHHH---
Confidence 4455666666666666777875 45887888777766666653 55543332 22577765
Q ss_pred hHHHhhhccC------cceeeeCCC------CCHHHHHHHHHHhCCCC
Q 009728 342 HVEFLKGVAN------PLGIKVSDK------MDPNELVKLIEILNPQN 377 (527)
Q Consensus 342 HVeflrgI~N------PIGvKvGP~------~~p~elv~L~~~LnP~~ 377 (527)
+|.++.|++ ||+||+++. .+++|.+++++.|....
T Consensus 191 -~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G 237 (353)
T cd02930 191 -VEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAG 237 (353)
T ss_pred -HHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcC
Confidence 555555554 578888864 68999999999997654
No 35
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=52.20 E-value=48 Score=28.78 Aligned_cols=55 Identities=16% Similarity=0.284 Sum_probs=43.2
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCC--ceEEEc
Q 009728 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (527)
Q Consensus 355 vKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (527)
+-.|+.++++++++.+...+|+ +..|+=+-...+ ..++.+++++++.+. ..||+.
T Consensus 31 ~~lg~~~~~~~l~~~~~~~~pd-----vV~iS~~~~~~~-~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 31 IDLGVDVPPEEIVEAAKEEDAD-----AIGLSGLLTTHM-TLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEeccccccH-HHHHHHHHHHHHcCCCCCeEEEE
Confidence 4559999999999999999885 677776634444 668999999999986 456665
No 36
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.58 E-value=25 Score=36.06 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=65.9
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc--ChhHHHhhCh--HHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM--GAENMRVKLP--HLI 401 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm--Ga~~v~~~LP--~LI 401 (527)
.-++|||-|+=+ +-..++.+++..-||-||=|..++++|+...++.+--... .+|.|+-|. |...--+... .-|
T Consensus 99 vdilqIgs~~~~-n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn-~~i~L~eRg~~~Y~~~~~n~~dl~ai 176 (250)
T PRK13397 99 LDVIQVGARNMQ-NFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGK-SNIILCERGVRGYDVETRNMLDIMAV 176 (250)
T ss_pred CCEEEECccccc-CHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CeEEEEccccCCCCCccccccCHHHH
Confidence 458999999876 5678888888899999999999999999999999864333 379999876 3332211011 223
Q ss_pred HHHHH-cCCceEEEcCCCCC
Q 009728 402 RAVRR-SGQIVTWVSDPMHG 420 (527)
Q Consensus 402 ~AV~~-aG~~ViW~cDPMHG 420 (527)
..+++ .+.||+ +||=|.
T Consensus 177 ~~lk~~~~lPVi--vd~SHs 194 (250)
T PRK13397 177 PIIQQKTDLPII--VDVSHS 194 (250)
T ss_pred HHHHHHhCCCeE--ECCCCC
Confidence 34444 777876 688896
No 37
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=50.80 E-value=16 Score=38.35 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-.....+|.| .+++-..|--|+=.|=.+.+ |.|. |..| +=.|+|-+
T Consensus 138 eI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~~--- 197 (353)
T cd04735 138 EIEDIIDAFGEATRRAIEAGFD-------GVEIHGANGYLIQQFFSPHSNRRTDE-----WGGS-----LENRMRFP--- 197 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhcCCccCCCCcc-----cCCc-----HHHHHHHH---
Confidence 3445566666666666677875 45788888777766666665 5554 3333 12566653
Q ss_pred hHHHhhhccC----------cceeeeCCC------CCHHHHHHHHHHhC
Q 009728 342 HVEFLKGVAN----------PLGIKVSDK------MDPNELVKLIEILN 374 (527)
Q Consensus 342 HVeflrgI~N----------PIGvKvGP~------~~p~elv~L~~~Ln 374 (527)
.|-++.|++ |||||+++. ++++|.++++..|+
T Consensus 198 -~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~ 245 (353)
T cd04735 198 -LAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLA 245 (353)
T ss_pred -HHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHH
Confidence 456666654 677888873 45777777777774
No 38
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.26 E-value=33 Score=26.73 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=25.8
Q ss_pred CCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEE
Q 009728 375 PQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTW 413 (527)
Q Consensus 375 P~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW 413 (527)
+...+|.-.++.|+-.+... .++++.++.|..|+|
T Consensus 36 ~~~~~~~~~v~i~v~~~~~~----~~~~~L~~~G~~v~~ 70 (72)
T cd04883 36 PSKEEDNKILVFRVQTMNPR----PIIEDLRRAGYEVLW 70 (72)
T ss_pred ccCCCCeEEEEEEEecCCHH----HHHHHHHHCCCeeeC
Confidence 44456777777787533322 899999999999999
No 39
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=49.85 E-value=59 Score=33.85 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHH
Q 009728 363 PNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVR 442 (527)
Q Consensus 363 p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (527)
.++|.+|++.|.--..--++++-||+-...-....+.++++.+++|.. +|+ =+|+|.. .+ +.+|+.
T Consensus 152 ~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i--~l~~~h~---~e--------l~~~~~ 217 (321)
T TIGR03822 152 PRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYV--ALHANHA---RE--------LTAEAR 217 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEE--EecCCCh---hh--------cCHHHH
Confidence 678999999986432233677888863332234478999999999966 566 3677742 22 247888
Q ss_pred HHHHHHHhhCCcCccceeeecC--CCcccccCCCCCCCccccccccccCCCCC-------CChHhHHHHHHHHHHHHH
Q 009728 443 AFFDVHEQEGSHPGGVHLEMTG--QNVTECIGGSRTVTFDDLSSRYHTHCDPR-------LNASQSLELAFIIAERLR 511 (527)
Q Consensus 443 ~ff~vh~~~Gs~~GGlHLE~Tg--~~VTECvGG~~~~~e~dL~~rY~T~CDPR-------LN~~QsLelaf~ia~~l~ 511 (527)
..++..++.|-..+.--+=+.| +|+.+-..=...+.+-....-|-..|||- ++.+++.++...+..++.
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~ 295 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRIS 295 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCC
Confidence 8888888887432221111111 33222110001111123334677889987 666777777555444443
No 40
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=49.00 E-value=27 Score=37.81 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=39.8
Q ss_pred CCCChhHHHHHHHHHHH-----------HHHHHHHhhc-CCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHH
Q 009728 213 RNPDPQRLIRAYCQSAA-----------TLNLLRAFAT-GGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMS 280 (527)
Q Consensus 213 R~PDP~Rll~aY~~Saa-----------tLn~lRa~~~-gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~ 280 (527)
=.-||-|||+|+..++. |+++|+.... +.++.+..- ....++..+...-...+++|.
T Consensus 128 F~EDPLRILRa~RFaarL~~~gF~ie~eT~~~i~~~~~~~~L~~vs~E-----------RI~~El~kiL~~p~~~l~~L~ 196 (360)
T PRK13296 128 FIEDPLRVVRLARFKAQLSNFNFSIAQEMLALIKELVKTGELNHLTRE-----------RLHIEFVKALNNPKIFFTTLK 196 (360)
T ss_pred cccCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhhhhhcCCHH-----------HHHHHHHHHHhChHHHHHHHH
Confidence 36799999999999884 8888886542 222222221 112233444444456788899
Q ss_pred HhCCCCC
Q 009728 281 AAGLTVD 287 (527)
Q Consensus 281 a~G~~~~ 287 (527)
.+|+-..
T Consensus 197 ~~glL~~ 203 (360)
T PRK13296 197 ELEALKI 203 (360)
T ss_pred HcCCHHH
Confidence 9987653
No 41
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.66 E-value=76 Score=28.52 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHhCCCCCCCcEEEE--------eccChhHHHhhChHHHHHHHH--cCCceEEEcC
Q 009728 361 MDPNELVKLIEILNPQNKPGRITII--------TRMGAENMRVKLPHLIRAVRR--SGQIVTWVSD 416 (527)
Q Consensus 361 ~~p~elv~L~~~LnP~~~pGRLTLI--------~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cD 416 (527)
.+.+++.+-++..- ...| .+.+| .++..+...+.|-.+|+++++ .+.+|+|++=
T Consensus 32 ~~~~~~~~~l~~~~-~~~p-d~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~ 95 (169)
T cd01828 32 DTTRGLLARLDEDV-ALQP-KAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQSI 95 (169)
T ss_pred ccHHHHHHHHHHHh-ccCC-CEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 33445544444333 3345 55555 346789999999999999999 8889999763
No 42
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=48.19 E-value=53 Score=35.22 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc-------ChhHHHhhCh
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM-------GAENMRVKLP 398 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm-------Ga~~v~~~LP 398 (527)
.-++|||-|+=+ +-..++++++..-||-+|=|..++++|+..-++.+-=... .+|.|.-|. |...+ -|-
T Consensus 202 vd~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn-~~i~L~erg~s~yp~~~~~~l--dl~ 277 (360)
T PRK12595 202 VDVIQIGARNMQ-NFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGN-GQIILCERGIRTYEKATRNTL--DIS 277 (360)
T ss_pred CCeEEECccccc-CHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCC-CCEEEECCccCCCCCCCCCCc--CHH
Confidence 558999998766 4678888888899999999999999999999999853222 368888765 34433 233
Q ss_pred HHHHHHHHcCCceEEEcCCCCC
Q 009728 399 HLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 399 ~LI~AV~~aG~~ViW~cDPMHG 420 (527)
.+..--+..|.||++ ||=|.
T Consensus 278 ~i~~lk~~~~~PV~~--d~~Hs 297 (360)
T PRK12595 278 AVPILKQETHLPVMV--DVTHS 297 (360)
T ss_pred HHHHHHHHhCCCEEE--eCCCC
Confidence 333333347888875 66685
No 43
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=48.18 E-value=28 Score=36.72 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=43.3
Q ss_pred HHHhhChHHHHHHHHcCCceEEE---cCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHh
Q 009728 392 NMRVKLPHLIRAVRRSGQIVTWV---SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQ 450 (527)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~ 450 (527)
--++..|+|-+|--+.|..=+.+ +||=+.=. -.++=+.-..|+.+++|++...++..+
T Consensus 217 G~Re~V~~larAAvA~GaDGlfiEvHpdP~~Als-Dg~q~l~~~~l~~ll~~l~~i~~~~~~ 277 (290)
T PLN03033 217 GLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPV-DGPTQWPLRHLEELLEELIAIARVTKG 277 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEecCCccccCC-CcccCcCHHHHHHHHHHHHHHHHHHhc
Confidence 45788999999999999876665 56665432 123457788899999999988887764
No 44
>TIGR01309 L30P_arch 50S ribosomal protein L30P, archaeal. This model represents the archaeal ribosomal protein similar to longer (~ 250 residue) eukaryotic 60S ribosomal protein L7 and to the much shorter (~ 60 residue) bacterial 50S ribosomal protein L30. Protein naming follows the SwissProt designation as L30P, while the gene symbol rpmD follows TIGR usage.
Probab=46.95 E-value=13 Score=35.64 Aligned_cols=109 Identities=24% Similarity=0.414 Sum_probs=72.4
Q ss_pred CccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHH--H
Q 009728 79 KKALQLPEYPDKEELESVLKTLDDFPPIVFAGEA--RSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRI--L 154 (527)
Q Consensus 79 ~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~--L 154 (527)
...-|...++|.++ +...|+...|+|+.+|+ +.+++.+-. +|+ + .||. ..|.+.|.+++.+ +
T Consensus 26 ~ri~~~V~v~~tp~---~~gML~kV~~yV~~ge~~~~tv~~Li~k--RG~--~-~g~~------~ltd~~i~e~~g~~~i 91 (152)
T TIGR01309 26 HRVNHCVLYPETPT---YLGMLQKVKDYVTWGEIDEDTLELLIRK--RGR--L-VGGD------KVTDEYVKEVTGYESV 91 (152)
T ss_pred CcCCCEEEEeCCHH---HHHHHHHhHhheeEecCCHHHHHHHHHH--hcc--c-cCCC------cCCHHHHHHHcCCccH
Confidence 34446667777755 45566667899999985 556666664 454 2 3664 4666788887655 6
Q ss_pred HHHHHHHhhcC-------CCceEEecccccccCCCCCCcccccCCeecccccCCcCC
Q 009728 155 LQMGVVLMFGG-------QMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (527)
Q Consensus 155 lqMa~vL~~g~-------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 204 (527)
..|+..|..+. =+|+.|+-=--|-|.+-+..+| .+|-.+- ||||-||
T Consensus 92 edl~~~i~~~~~~f~~~~~~~~FrL~pPr~G~~~~~k~~~--~~gG~~G-~r~~~In 145 (152)
T TIGR01309 92 DELAKALVEGEIKLSEAGLKPVFRLHPPRKGFKGGIKTPY--RDGGELG-YRGEKIN 145 (152)
T ss_pred HHHHHHHHcCCCCccccCccCceeCCCCCccccccccccc--ccCCCCc-ccHHHHH
Confidence 77777665543 4677777666788875555666 3444554 9999999
No 45
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.10 E-value=25 Score=36.59 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=31.4
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
=||.||++|..+.+++.++++.|.-...-| |+++.|+.
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~-I~~~n~~~ 240 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDG-IIATNTTI 240 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcE-EEEECCcc
Confidence 499999999999889999999987555554 88888874
No 46
>PLN03007 UDP-glucosyltransferase family protein
Probab=44.72 E-value=48 Score=36.30 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.0
Q ss_pred cEEEEeccChhH--HHhhChHHHHHHHHcCCceEEEcCC
Q 009728 381 RITIITRMGAEN--MRVKLPHLIRAVRRSGQIVTWVSDP 417 (527)
Q Consensus 381 RLTLI~RmGa~~--v~~~LP~LI~AV~~aG~~ViW~cDP 417 (527)
|=++..=||... -.+.|-.++++....|++++|++.+
T Consensus 285 ~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~ 323 (482)
T PLN03007 285 DSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRK 323 (482)
T ss_pred CceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 435555678542 2567888999999999999999985
No 47
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=42.58 E-value=36 Score=36.12 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeeccccccccccccc--ccccCCCCCcccCCCCceeeccccCCCCc
Q 009728 263 DRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSL--TRLDSTSGLYYDCSAHFLWVGERTRQLDG 340 (527)
Q Consensus 263 ~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~al--tR~d~~~g~~Y~~SaH~lWIGeRTRqlDg 340 (527)
++-+++.+..-+|-+....+|.| .+++...|--|+=.+=++. .|.|...|.+ =.|+|-
T Consensus 152 ~eI~~ii~~f~~AA~rA~~AGfD-------GVEIh~ahGyLl~qFLSp~~N~RtDeYGGsl----------ENR~Rf--- 211 (362)
T PRK10605 152 EEIPGIVNDFRQAIANAREAGFD-------LVELHSAHGYLLHQFLSPSSNQRTDQYGGSV----------ENRARL--- 211 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhcCCcCCCCCCcCCCcH----------HHHHHH---
Confidence 45567777777777888889886 4588889977777777776 4666544432 257775
Q ss_pred hhHHHhhhccC-----cceeeeCCC---------CCHHH-HHHHHHHhC
Q 009728 341 AHVEFLKGVAN-----PLGIKVSDK---------MDPNE-LVKLIEILN 374 (527)
Q Consensus 341 AHVeflrgI~N-----PIGvKvGP~---------~~p~e-lv~L~~~Ln 374 (527)
-+|-++.|+. +||||+.|. .+++| .+++|..|.
T Consensus 212 -~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~ 259 (362)
T PRK10605 212 -VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLG 259 (362)
T ss_pred -HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHH
Confidence 3566777665 789999763 56677 577777774
No 48
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=41.80 E-value=1.1e+02 Score=31.81 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=58.6
Q ss_pred HHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHH
Q 009728 366 LVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFF 445 (527)
Q Consensus 366 lv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff 445 (527)
+-+|++.|+-.+.+.=.-++. .+.+.-|.+|+++.++||-+.. ||-+-....+ -.-+...+||....
T Consensus 79 ~~RiLdlL~~~gv~aTffv~g-----~~~e~~P~~v~~i~~~GHEIg~-----Hg~~H~~~~~---ls~~~e~~~i~~s~ 145 (297)
T TIGR03212 79 FWRLLRLFTERGIPVTVFGVA-----MALARNPEAVAAMKEAGWEIAS-----HGLRWIDYQD---MDEAQEREHIAEAI 145 (297)
T ss_pred HHHHHHHHHHcCCCEEEEeEH-----HHHHHCHHHHHHHHHcCCEEee-----ccccCccccc---CCHHHHHHHHHHHH
Confidence 556677777677764444443 4667889999999999999874 7876544333 35688899999999
Q ss_pred HHHHh-hCCcCccc
Q 009728 446 DVHEQ-EGSHPGGV 458 (527)
Q Consensus 446 ~vh~~-~Gs~~GGl 458 (527)
++.++ .|..|-|-
T Consensus 146 ~~i~~~tG~~P~G~ 159 (297)
T TIGR03212 146 RLHTEVTGERPLGW 159 (297)
T ss_pred HHHHHHhCCCCceE
Confidence 99887 57777665
No 49
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=39.35 E-value=1.7e+02 Score=28.40 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHH
Q 009728 362 DPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEV 441 (527)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev 441 (527)
++.|+++.+....| .=|++.++|-| ...++...++|...+.++++.+- +....+ --|.-+..++++
T Consensus 52 ~~~~~i~~l~~~~~---~~~~~~l~~~~--------~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~--~~~~~~~~~~~~ 117 (265)
T cd03174 52 DDWEVLRAIRKLVP---NVKLQALVRNR--------EKGIERALEAGVDEVRIFDSASE-THSRKN--LNKSREEDLENA 117 (265)
T ss_pred CHHHHHHHHHhccC---CcEEEEEccCc--------hhhHHHHHhCCcCEEEEEEecCH-HHHHHH--hCCCHHHHHHHH
Confidence 44555655555554 33787888887 55678888999999999998763 211111 114455667777
Q ss_pred HHHHHHHHhhCCcCccceeeecCCCcccc
Q 009728 442 RAFFDVHEQEGSHPGGVHLEMTGQNVTEC 470 (527)
Q Consensus 442 ~~ff~vh~~~Gs~~GGlHLE~Tg~~VTEC 470 (527)
..+.+..++.| +.+++.-.+++-|
T Consensus 118 ~~~i~~a~~~G-----~~v~~~~~~~~~~ 141 (265)
T cd03174 118 EEAIEAAKEAG-----LEVEGSLEDAFGC 141 (265)
T ss_pred HHHHHHHHHCC-----CeEEEEEEeecCC
Confidence 77777777764 6777777777777
No 50
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=39.01 E-value=1e+02 Score=27.37 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=42.0
Q ss_pred eeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCC-c-eEEEc
Q 009728 354 GIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ-I-VTWVS 415 (527)
Q Consensus 354 GvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~-~-ViW~c 415 (527)
-+-.|+..+++++++.+...+|+ +..|+=+-. .-...++.+++++++.|. . ++|++
T Consensus 30 vi~lG~~vp~e~~~~~a~~~~~d-----~V~iS~~~~-~~~~~~~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 30 VIYTGLRQTPEEIVEAAIQEDVD-----VIGLSSLSG-GHMTLFPEVIELLRELGAGDILVVGG 87 (122)
T ss_pred EEECCCCCCHHHHHHHHHHcCCC-----EEEEcccch-hhHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 35689999999999999988874 555654433 344568999999999987 3 45554
No 51
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=38.39 E-value=37 Score=39.34 Aligned_cols=91 Identities=22% Similarity=0.350 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-.....+|.| .++|-..|--|+=.+=.+++ |.|...|. + =.|+|-+
T Consensus 545 eI~~~i~~f~~aA~~a~~aGfD-------gveih~ahGyLl~qFlsp~~N~RtD~yGGs-l---------enR~r~~--- 604 (765)
T PRK08255 545 DMDRVRDDFVAAARRAAEAGFD-------WLELHCAHGYLLSSFISPLTNQRTDEYGGS-L---------ENRLRYP--- 604 (765)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEecccchHHHHhcCCCCCCCCCCCCCC-H---------HHHhHHH---
Confidence 4556666666666666777875 45888888877777767765 55553332 1 1466643
Q ss_pred hHHHhhhccC------cceeeeCC------CCCHHHHHHHHHHhCC
Q 009728 342 HVEFLKGVAN------PLGIKVSD------KMDPNELVKLIEILNP 375 (527)
Q Consensus 342 HVeflrgI~N------PIGvKvGP------~~~p~elv~L~~~LnP 375 (527)
+|-++.|+. ||+||+.+ ..+++|.+++++.|.-
T Consensus 605 -~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~ 649 (765)
T PRK08255 605 -LEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKA 649 (765)
T ss_pred -HHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHh
Confidence 344555443 89999997 4567788888877753
No 52
>cd02685 MIT_C MIT_C; domain found C-terminal to MIT (contained within Microtubule Interacting and Trafficking molecules) domains, as well as in some bacterial proteins. The function of this domain is unknown.
Probab=38.01 E-value=86 Score=30.20 Aligned_cols=85 Identities=15% Similarity=0.275 Sum_probs=64.3
Q ss_pred CCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccChh---HHHhhChH
Q 009728 325 SAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL--NPQNKPGRITIITRMGAE---NMRVKLPH 399 (527)
Q Consensus 325 SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRLTLI~RmGa~---~v~~~LP~ 399 (527)
++.-+|| +-++|...-.|.| ++++||.+ +|.+ .=.+.|||.--.. +-.+.|-.
T Consensus 18 ~~~~I~i-------eDPYir~~hQi~N--------------l~~F~El~vk~~~~-~~~i~LvT~~d~~~~~~Q~~~l~~ 75 (148)
T cd02685 18 GVTEITV-------EDPYIRNFHQIRN--------------FLRFCELVVKPPCE-LKYIHLVTGEDEDNGKQQIEALEE 75 (148)
T ss_pred CceEEEE-------eCccccchHHHHH--------------HHHHHHHHhcCccc-eEEEEEEecCCCCCHHHHHHHHHH
Confidence 5556665 4455555555544 67777775 5555 5599999998766 44677888
Q ss_pred HHHHHHHcCCceEEEcCC-CCCCcccCCCCccc
Q 009728 400 LIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKT 431 (527)
Q Consensus 400 LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KT 431 (527)
|=+....-|..+.|..|+ +|---+.+.+|.+.
T Consensus 76 i~~sl~~~gI~~~~~f~~tiHDR~I~~~nGw~I 108 (148)
T cd02685 76 IKQSLASHGVEFTWEFSDTIHDREIRTDNGWII 108 (148)
T ss_pred HHHHHHhCCcEEEEEECCCccceEEEecCCeEE
Confidence 899999999999999986 89999999999875
No 53
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=37.01 E-value=40 Score=35.43 Aligned_cols=90 Identities=27% Similarity=0.374 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-.....+|.| .+++-..|-.|+=.|=.+.+ |.|.. ..| +=.|+|.
T Consensus 135 eI~~ii~~f~~AA~ra~~aGfD-------gVeih~ahGyLl~qFlsp~~N~RtD~y-----GGs-----lenR~r~---- 193 (343)
T cd04734 135 DIEEIIAAFADAARRCQAGGLD-------GVELQAAHGHLIDQFLSPLTNRRTDEY-----GGS-----LENRMRF---- 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHhhCCCcCCCCCcC-----CCC-----HHHHhHH----
Confidence 3445555555555555567765 46888899888766666655 54543 323 3367765
Q ss_pred hHHHhhhccC------cceeeeCCC------CCHHHHHHHHHHhC
Q 009728 342 HVEFLKGVAN------PLGIKVSDK------MDPNELVKLIEILN 374 (527)
Q Consensus 342 HVeflrgI~N------PIGvKvGP~------~~p~elv~L~~~Ln 374 (527)
.+|-++.|+. ||+||+|+. .+++|.+++++.|+
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~ 238 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLA 238 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHH
Confidence 3555555543 577888874 45777777777775
No 54
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=36.12 E-value=97 Score=29.03 Aligned_cols=62 Identities=16% Similarity=0.335 Sum_probs=40.1
Q ss_pred eeeCCCCCHH---HHHHHHHHhCCCCCCCcEEEEe--ccChhH-----HHhhChHHHHHHHHcCCce-EEEcC
Q 009728 355 IKVSDKMDPN---ELVKLIEILNPQNKPGRITIIT--RMGAEN-----MRVKLPHLIRAVRRSGQIV-TWVSD 416 (527)
Q Consensus 355 vKvGP~~~p~---elv~L~~~LnP~~~pGRLTLI~--RmGa~~-----v~~~LP~LI~AV~~aG~~V-iW~cD 416 (527)
+|..+...++ .++++++..+.....+|+.+++ -.|.+. .....+.+|+..++.|.+| +|-+|
T Consensus 86 iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sf~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn 158 (179)
T cd08555 86 IKQDSPEYDEFLAKVLKELRVYFDYDLRGKVVLSSFNALGVDYYNFSSKLIKDTELIASANKLGLLSRIWTVN 158 (179)
T ss_pred eCCCCCcchHHHHHHHHHHHHcCCcccCCCEEEEeecccCCChhcccchhhcCHHHHHHHHHCCCEEEEEeeC
Confidence 5655544443 4444444444322667999888 344443 2346899999999999985 79776
No 55
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=35.46 E-value=38 Score=35.64 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=39.0
Q ss_pred ccccCCCCchhHHHhhhcc-----------CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 332 GERTRQLDGAHVEFLKGVA-----------NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 332 GeRTRqlDgAHVeflrgI~-----------NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
|.|..|-.....+.++.|+ =||.||++|.++-+++.++++.+.-...- =|++|-++-
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~Gad-Gi~l~NT~~ 248 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGID-GVIATNTTV 248 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEECCCC
Confidence 3444444445555555542 59999999999988888888877544333 488888874
No 56
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=34.77 E-value=54 Score=33.64 Aligned_cols=51 Identities=31% Similarity=0.458 Sum_probs=38.1
Q ss_pred hhHHHhhhc----cCcceeeeCCCCCHHHHHHHHHHhCCCC-CCCcEEEEeccChh
Q 009728 341 AHVEFLKGV----ANPLGIKVSDKMDPNELVKLIEILNPQN-KPGRITIITRMGAE 391 (527)
Q Consensus 341 AHVeflrgI----~NPIGvKvGP~~~p~elv~L~~~LnP~~-~pGRLTLI~RmGa~ 391 (527)
...+.++.| .=||.||++|..+.+++.++++.|.-.- -.-=||+|-+++..
T Consensus 144 ~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~ 199 (294)
T cd04741 144 ATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNG 199 (294)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCcc
Confidence 455666655 3599999999999999999999997541 22348888888643
No 57
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=33.78 E-value=49 Score=35.19 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeeccccccccccccc--ccccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSL--TRLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~al--tR~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+=+++.+..-+|-.....+|.| .+++-..|--|+=.+=++. .|.|...|. +=.|+|-+
T Consensus 144 eI~~ii~~f~~AA~ra~~aGfD-------gVEih~ahGyLl~QFlSp~~N~RtD~yGGs----------lenR~Rf~--- 203 (370)
T cd02929 144 DIKRVRRWYVDAALRARDAGFD-------IVYVYAAHGYLPLQFLLPRYNKRTDEYGGS----------LENRARFW--- 203 (370)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEcccccchHHHhhCccccCCccccCCC----------hHhhhHHH---
Confidence 3455666666666666777875 4588888877777777776 454543332 12677765
Q ss_pred hHHHhhhccC------cceeeeCCC--------CCHHHHHHHHHHhC
Q 009728 342 HVEFLKGVAN------PLGIKVSDK--------MDPNELVKLIEILN 374 (527)
Q Consensus 342 HVeflrgI~N------PIGvKvGP~--------~~p~elv~L~~~Ln 374 (527)
+|-+++|++ ||+||++|. .+.+|.+++++.|.
T Consensus 204 -~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~ 249 (370)
T cd02929 204 -RETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLD 249 (370)
T ss_pred -HHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 566666553 789999863 36888888888886
No 58
>PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated
Probab=33.00 E-value=35 Score=38.14 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=29.5
Q ss_pred chhhhcchhhHH-HHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCC
Q 009728 137 ESFKEFNANNIR-DTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGD 201 (527)
Q Consensus 137 EsF~e~~~~~I~-~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD 201 (527)
|....++++.|| .|+++|..|--+=......-| +=|||.+= .++|..+|.||-+
T Consensus 258 E~P~~~~~~~ir~eK~kvL~sir~~~~~~~~~~~-----VrGQY~~g------~~~g~~~~gY~~e 312 (495)
T PRK05722 258 EPPASLDADSIRDEKVKVLRALRPITPEDVKENT-----VRGQYTAG------WIGGKPVPGYREE 312 (495)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCChhhhhcce-----eeccccCC------CCCCCCCCCccCC
Confidence 334445566665 356666554321111111123 35999642 3589999999976
No 59
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=33.00 E-value=79 Score=34.09 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.8
Q ss_pred cCCceEEEcCCCCCCc
Q 009728 407 SGQIVTWVSDPMHGNT 422 (527)
Q Consensus 407 aG~~ViW~cDPMHGNT 422 (527)
++.+| ++|+|||.+
T Consensus 170 ~~~kV--vvD~~~G~~ 183 (443)
T PRK10887 170 RGLKI--VVDCANGAT 183 (443)
T ss_pred CCCEE--EEECCCchH
Confidence 34444 456677655
No 60
>PLN02826 dihydroorotate dehydrogenase
Probab=32.72 E-value=47 Score=36.22 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=37.4
Q ss_pred ccccCCCCchhHHHhhhc-------------cCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009728 332 GERTRQLDGAHVEFLKGV-------------ANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR 387 (527)
Q Consensus 332 GeRTRqlDgAHVeflrgI-------------~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R 387 (527)
|.|.-|-.....++++.| .-||-||++|.++.+++.++++.+--...-| |++|-.
T Consensus 231 glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dG-Ii~~NT 298 (409)
T PLN02826 231 GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDG-LIISNT 298 (409)
T ss_pred CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCE-EEEEcc
Confidence 445445444556666655 3499999999999999999888765444444 555543
No 61
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=32.46 E-value=45 Score=34.62 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=75.5
Q ss_pred HHHhhhccC----cceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCC
Q 009728 343 VEFLKGVAN----PLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPM 418 (527)
Q Consensus 343 VeflrgI~N----PIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 418 (527)
.+.++.|+. ||.||+.|.++..++.+.++.+.-+...| ++.|-++|...+ +|+-
T Consensus 146 ~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~-i~~~nt~~~~~~---------------------iD~~ 203 (310)
T PRK02506 146 EQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAF-VNCINSIGNGLV---------------------IDPE 203 (310)
T ss_pred HHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEE-EEEeccCCCceE---------------------EecC
Confidence 456666654 99999999999999999998887665443 444455543211 1222
Q ss_pred CCCcc----cCCCCccccchhHHHHHHHHHHHHHHhhC-Cc----CccceeeecCCCccccc-CCCCCCCcccccccccc
Q 009728 419 HGNTI----KAPCGLKTRPFDSIRAEVRAFFDVHEQEG-SH----PGGVHLEMTGQNVTECI-GGSRTVTFDDLSSRYHT 488 (527)
Q Consensus 419 HGNT~----~~~~G~KTR~f~~Il~Ev~~ff~vh~~~G-s~----~GGlHLE~Tg~~VTECv-GG~~~~~e~dL~~rY~T 488 (527)
|+... ...+|+-.+....+ .++..++++++.+ .. .||| .|++||-|++ -|+ ++-.-|+.
T Consensus 204 ~~~~~~~~~~~~GGlSG~~i~p~--al~~v~~~~~~~~~~ipIig~GGI---~s~~da~e~i~aGA------~~Vqv~ta 272 (310)
T PRK02506 204 DETVVIKPKNGFGGIGGDYIKPT--ALANVRAFYQRLNPSIQIIGTGGV---KTGRDAFEHILCGA------SMVQVGTA 272 (310)
T ss_pred CCCccccCCCCCCcCCchhccHH--HHHHHHHHHHhcCCCCCEEEECCC---CCHHHHHHHHHcCC------CHHhhhHH
Confidence 22111 11234444444433 3344456666554 22 4899 4999999998 222 22233322
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 489 HCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 489 ~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
+- +-++...-++..-+.+.+.+..
T Consensus 273 ~~--~~gp~~~~~i~~~L~~~l~~~g 296 (310)
T PRK02506 273 LH--KEGPAVFERLTKELKAIMAEKG 296 (310)
T ss_pred HH--HhChHHHHHHHHHHHHHHHHhC
Confidence 11 1234455556666666666543
No 62
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.22 E-value=61 Score=33.72 Aligned_cols=92 Identities=25% Similarity=0.465 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009728 263 DRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDG 340 (527)
Q Consensus 263 ~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 340 (527)
++-+++.+..-+|-+....+|.| .+++-..|--|+=.+=.+.+ |.|. |..| +=.|+|-+
T Consensus 142 ~eI~~~i~~~~~aA~ra~~aGfD-------gVeih~a~gyLl~qFlsp~~N~R~D~-----yGGs-----lenR~rf~-- 202 (338)
T cd04733 142 EEIEDVIDRFAHAARLAQEAGFD-------GVQIHAAHGYLLSQFLSPLTNKRTDE-----YGGS-----LENRARLL-- 202 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEEchhhhhHHHHhcCCcCCCCCcc-----CCCC-----HHHHHHHH--
Confidence 34555666666666777778875 45788888777777777764 4443 3323 23687753
Q ss_pred hhHHHhhhcc------CcceeeeCC------CCCHHHHHHHHHHhCC
Q 009728 341 AHVEFLKGVA------NPLGIKVSD------KMDPNELVKLIEILNP 375 (527)
Q Consensus 341 AHVeflrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP 375 (527)
+|-++.|+ -||+||+.+ ..+++|.+++++.|.-
T Consensus 203 --~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~ 247 (338)
T cd04733 203 --LEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEE 247 (338)
T ss_pred --HHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHH
Confidence 44555554 289999974 5788888888888864
No 63
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.54 E-value=59 Score=34.19 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=31.6
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
=||.||++|..+.+++.++++.+.-...- =|+++.|+-
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gad-gi~~~nt~~ 249 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGID-GVIATNTTL 249 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCc-EEEEeCCcc
Confidence 49999999999999999999998755443 688888873
No 64
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.60 E-value=1.4e+02 Score=27.41 Aligned_cols=28 Identities=32% Similarity=0.601 Sum_probs=24.5
Q ss_pred hHHHhhChHHHHHHHHcCCceEEEcCCC
Q 009728 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPM 418 (527)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPM 418 (527)
+...+.|-.+|+.+++.|.+|+|++.|.
T Consensus 91 ~~~~~~l~~lv~~~~~~~~~vili~~pp 118 (200)
T cd01829 91 EEYRQRIDELLNVARAKGVPVIWVGLPA 118 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4677888999999999999999999864
No 65
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.42 E-value=46 Score=33.29 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=29.9
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
=||.||++|..+++|+.++++.|.-.. .-=|+++.|++
T Consensus 163 ~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad~i~~~~~~~ 200 (289)
T cd02810 163 IPLLVKLSPYFDLEDIVELAKAAERAG-ADGLTAINTIS 200 (289)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcC-CCEEEEEcccC
Confidence 489999999999999999999887444 34567776654
No 66
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=29.02 E-value=40 Score=34.57 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=32.8
Q ss_pred HHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCcc---ccchhHHHHHHH
Q 009728 393 MRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLK---TRPFDSIRAEVR 442 (527)
Q Consensus 393 v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~K---TR~f~~Il~Ev~ 442 (527)
+.+.+=..+++..++|..+|+++||..+.++-++.=++ -..+..|+++++
T Consensus 178 i~~~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~ 230 (339)
T PRK06252 178 VTDFCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVK 230 (339)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhc
Confidence 33445556777778899999999999887777764443 223344444443
No 67
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=28.93 E-value=1.3e+02 Score=32.52 Aligned_cols=63 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred ceeee----CCCCCHHHHHHHHHHhCCC-------CCCCcEEEEeccChhHHHhhChHHHHH-----HHHcCCceEEEcC
Q 009728 353 LGIKV----SDKMDPNELVKLIEILNPQ-------NKPGRITIITRMGAENMRVKLPHLIRA-----VRRSGQIVTWVSD 416 (527)
Q Consensus 353 IGvKv----GP~~~p~elv~L~~~LnP~-------~~pGRLTLI~RmGa~~v~~~LP~LI~A-----V~~aG~~ViW~cD 416 (527)
.|||+ |-.+++++..++-+.++.. ...|+++- ..+ +..++=.|.+. ++..+.+| ++|
T Consensus 107 ngiK~~~~~G~~i~~~~~~~ie~~~~~~~~~~~~~~~~g~i~~-~~~----~~~Y~~~l~~~~~~~~i~~~~~ki--vvd 179 (461)
T cd05800 107 NGVKVKPAFGGSALPEITAAIEARLASGEPPGLEARAEGLIET-IDP----KPDYLEALRSLVDLEAIREAGLKV--VVD 179 (461)
T ss_pred CeEEEeCCCCCcCChHHHHHHHHHHhhccccccccccCCceee-cCC----HHHHHHHHHHHhChhhhhcCCceE--EEe
Confidence 47887 5556666655554444422 34566652 222 23333333333 33455555 579
Q ss_pred CCCCCc
Q 009728 417 PMHGNT 422 (527)
Q Consensus 417 PMHGNT 422 (527)
+|||-+
T Consensus 180 ~~~G~~ 185 (461)
T cd05800 180 PMYGAG 185 (461)
T ss_pred CCCCCc
Confidence 999965
No 68
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.89 E-value=97 Score=31.24 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHH
Q 009728 359 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIR 438 (527)
Q Consensus 359 P~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il 438 (527)
.++|.+|-.+|++..- +..+||+.+|.-.|+...++.+ .+.+.+++.|..-+=+.-|++... + -
T Consensus 49 ~~Lt~~Er~~l~~~~~-~~~~~~~~vi~gv~~~st~~~i-~~a~~a~~~Gad~v~v~~P~~~~~--s------------~ 112 (289)
T PF00701_consen 49 YSLTDEERKELLEIVV-EAAAGRVPVIAGVGANSTEEAI-ELARHAQDAGADAVLVIPPYYFKP--S------------Q 112 (289)
T ss_dssp GGS-HHHHHHHHHHHH-HHHTTSSEEEEEEESSSHHHHH-HHHHHHHHTT-SEEEEEESTSSSC--C------------H
T ss_pred ccCCHHHHHHHHHHHH-HHccCceEEEecCcchhHHHHH-HHHHHHhhcCceEEEEeccccccc--h------------h
Confidence 4567888888887754 3346889999999998887755 678888999999888888998753 2 2
Q ss_pred HHHHHHHHHHHhhCCcCccceee
Q 009728 439 AEVRAFFDVHEQEGSHPGGVHLE 461 (527)
Q Consensus 439 ~Ev~~ff~vh~~~Gs~~GGlHLE 461 (527)
+|+..||+...+....|=-++--
T Consensus 113 ~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 113 EELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEEB
T ss_pred hHHHHHHHHHHhhcCCCEEEEEC
Confidence 46667777766666555555443
No 69
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=28.78 E-value=2.5e+02 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=25.3
Q ss_pred ChhHHHhhChHHHHHHHHcCCceEEEcCCCC
Q 009728 389 GAENMRVKLPHLIRAVRRSGQIVTWVSDPMH 419 (527)
Q Consensus 389 Ga~~v~~~LP~LI~AV~~aG~~ViW~cDPMH 419 (527)
..+.+.+.|-.+|+.+++.|.+|+|+.=|..
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~~~ 112 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQAP 112 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3456888899999999999999999875443
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=28.78 E-value=56 Score=27.50 Aligned_cols=35 Identities=26% Similarity=0.590 Sum_probs=26.2
Q ss_pred HHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEE
Q 009728 343 VEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITI 384 (527)
Q Consensus 343 VeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTL 384 (527)
+.|||.+. |++-+-.+|..|+..|||++.-|+|-|
T Consensus 21 ~~~Lra~~-------~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 21 ITYLRAVT-------GRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred HHHHHHHc-------CCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 35666554 236677899999999999999877753
No 71
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=28.06 E-value=79 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=8.6
Q ss_pred HcCCceEEEcCCCCCCc
Q 009728 406 RSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 406 ~aG~~ViW~cDPMHGNT 422 (527)
.++.+|++ |+|||.+
T Consensus 175 ~~~~kVvv--D~~~Ga~ 189 (450)
T PRK14314 175 LKGLKIVL--DCANGAA 189 (450)
T ss_pred CCCCEEEE--ECCCchH
Confidence 34555543 7777754
No 72
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=27.27 E-value=67 Score=32.08 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=23.7
Q ss_pred HHHhhhccC---cceeeeCCCCCHHHHHHHHHHhCCCC
Q 009728 343 VEFLKGVAN---PLGIKVSDKMDPNELVKLIEILNPQN 377 (527)
Q Consensus 343 VeflrgI~N---PIGvKvGP~~~p~elv~L~~~LnP~~ 377 (527)
.++++.|++ ||.||+.+..+ ++.+++++.|.-..
T Consensus 129 ~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG 165 (233)
T cd02911 129 SEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAG 165 (233)
T ss_pred HHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhC
Confidence 455555554 99999998887 67777777765433
No 73
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=27.19 E-value=52 Score=33.77 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.7
Q ss_pred HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCC
Q 009728 392 NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAP 426 (527)
Q Consensus 392 ~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~ 426 (527)
.+.+.+=..+++..++|..+|+++||..+.++-++
T Consensus 177 ~i~~~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp 211 (340)
T TIGR01463 177 LALDFVIAYAKAMVEAGADVIAIADPFASSDLISP 211 (340)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCccCccccCH
Confidence 33455556677777899999999999976555554
No 74
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=27.03 E-value=1.3e+02 Score=30.10 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCCC-CcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcC--CCCCCc
Q 009728 363 PNELVKLIEILNPQNKP-GRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSD--PMHGNT 422 (527)
Q Consensus 363 p~elv~L~~~LnP~~~p-GRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cD--PMHGNT 422 (527)
-+++.+|.+.|-|-..+ .+|-+-+=.| +.+.+.|=.+-+.++.-+.+.+|+.| ||=|.-
T Consensus 20 ~~~F~~lw~~l~~~~~~Lk~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRPMSGDI 81 (183)
T PF12617_consen 20 LAAFERLWQALAPSVPQLKLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRPMSGDI 81 (183)
T ss_pred cHHHHHHHHHHHhhhhhccEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcccCCCC
Confidence 36788888999998888 4444444445 55668899999999999999999999 999864
No 75
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=26.34 E-value=1.2e+02 Score=28.42 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceE
Q 009728 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVT 412 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~Vi 412 (527)
|..++.+++++.++.+.+. .+ -|+=.|-+-..+.|-.|++.+++.|.++.
T Consensus 43 g~~lt~eel~~~I~~~~~~-~~----gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRSL-IS----CVLFLGGEWNREALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CcCCCHHHHHHHHHHhCCC-CC----EEEEechhcCHHHHHHHHHHHHHCCCCEE
Confidence 6679999999999998744 23 34445777444668899999999998763
No 76
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=26.01 E-value=1e+02 Score=31.25 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=23.2
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
=||.||++|+. +|..++++.|.-...- =|+++.++.
T Consensus 158 ~pv~vKi~~~~--~~~~~~a~~l~~~G~d-~i~v~nt~~ 193 (300)
T TIGR01037 158 VPVFAKLSPNV--TDITEIAKAAEEAGAD-GLTLINTLR 193 (300)
T ss_pred CCEEEECCCCh--hhHHHHHHHHHHcCCC-EEEEEccCC
Confidence 39999999854 4667777666533332 367666554
No 77
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=25.76 E-value=2.2e+02 Score=29.13 Aligned_cols=74 Identities=16% Similarity=0.308 Sum_probs=54.0
Q ss_pred HHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHH
Q 009728 365 ELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAF 444 (527)
Q Consensus 365 elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~f 444 (527)
-+-+|++.|+-.+.++=.-++. .+.+.-|.+|+++.++||-|. .||-+-.. +..=.-+.+.+||+..
T Consensus 29 nt~riL~lL~~~gikATFFv~g-----~~~e~~p~lir~i~~~GhEIg-----sHg~sH~~---l~~ls~ee~~~eI~~s 95 (265)
T TIGR03006 29 NTDRILDLLDRHGVKATFFTLG-----WVAERYPELVRRIVAAGHELA-----SHGYGHER---VTTQTPEAFRADIRRS 95 (265)
T ss_pred hHHHHHHHHHHcCCcEEEEEec-----cchhhCHHHHHHHHHcCCEee-----eccccCcC---chhCCHHHHHHHHHHH
Confidence 3566778887777776555543 456778999999999999775 57755433 2233458889999999
Q ss_pred HHHHHhh
Q 009728 445 FDVHEQE 451 (527)
Q Consensus 445 f~vh~~~ 451 (527)
.++.++.
T Consensus 96 ~~~Le~i 102 (265)
T TIGR03006 96 KALLEDL 102 (265)
T ss_pred HHHHHHH
Confidence 9999874
No 78
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.45 E-value=1.1e+02 Score=32.20 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=62.8
Q ss_pred ccccCCCCchhHHHhhhc--cCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCC
Q 009728 332 GERTRQLDGAHVEFLKGV--ANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ 409 (527)
Q Consensus 332 GeRTRqlDgAHVeflrgI--~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~ 409 (527)
|-+.--+|-..|..++.. .=||=+=+.=+. ..||=. =-...--++..|+|.+|--+.|.
T Consensus 171 gy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsv---------------q~p~~~----g~~s~G~re~v~~larAAvA~Ga 231 (281)
T PRK12457 171 GYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSL---------------QCRDPL----GAASGGRRRQVLDLARAGMAVGL 231 (281)
T ss_pred CCCCcccchHHHHHHHhhCCCCCEEEeCCccc---------------cCCCCC----CCCCCCCHHHHHHHHHHHHHhCC
Confidence 444456777888888876 456644322111 012210 00113457889999999999999
Q ss_pred ceEEE---cCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHh
Q 009728 410 IVTWV---SDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQ 450 (527)
Q Consensus 410 ~ViW~---cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~ 450 (527)
.=+.+ +||=+.=. -.++=+.-..|+.++++++.+-++...
T Consensus 232 DGl~iEvHpdP~~Als-Dg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 232 AGLFLEAHPDPDRARC-DGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred CEEEEEecCCccccCC-CcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 86666 57765533 233457778899999999988777554
No 79
>PRK07394 hypothetical protein; Provisional
Probab=25.16 E-value=63 Score=34.35 Aligned_cols=88 Identities=22% Similarity=0.296 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHhC----CCCCC-C-cEEEEeccChhHH---HhhChHHHHHHHHcCCceEEEcCCCCCCcccCC-CCccc
Q 009728 362 DPNELVKLIEILN----PQNKP-G-RITIITRMGAENM---RVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAP-CGLKT 431 (527)
Q Consensus 362 ~p~elv~L~~~Ln----P~~~p-G-RLTLI~RmGa~~v---~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~-~G~KT 431 (527)
|+||+...++.+. |-..| . .+..|+=-|-|.- -...+..--.+.+.|.+|+ +|||.-.++ +|+.+
T Consensus 57 T~eEiaG~~~a~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~-----kHGnr~~ssk~Gvts 131 (342)
T PRK07394 57 TPEELAGMLDTYDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVV-----LHGGDRMPTKYGVPL 131 (342)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEE-----EECCCCCCCCCCchH
Confidence 7888888877643 11111 1 3445544554432 2233444445678999998 899965554 47555
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeee-cCCCcccccC
Q 009728 432 RPFDSIRAEVRAFFDVHEQEGSHPGGVHLEM-TGQNVTECIG 472 (527)
Q Consensus 432 R~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~-Tg~~VTECvG 472 (527)
.||+ ++. |+.+++ |.+++.+|+-
T Consensus 132 ---aDvL----------e~L-----Gv~~~~~~~~~~~~~l~ 155 (342)
T PRK07394 132 ---VELW----------QGL-----GVDLTGLSLEQVQEGFE 155 (342)
T ss_pred ---HHHH----------HHC-----CCCCCCCCHHHHHHHHH
Confidence 3444 444 788998 9999999954
No 80
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=25.13 E-value=1.3e+02 Score=31.39 Aligned_cols=46 Identities=26% Similarity=0.417 Sum_probs=31.7
Q ss_pred hHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHH
Q 009728 398 PHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVH 448 (527)
Q Consensus 398 P~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh 448 (527)
|.+++.+++.|.+||=+ +|+|+..+.. +.-.+++++.||..||+--
T Consensus 123 ~~~~~~~a~~~~~vVlm--h~~g~p~~~~---~~~~y~dv~~~v~~~l~~~ 168 (282)
T PRK11613 123 PGALEAAAETGLPVCLM--HMQGNPKTMQ---EAPKYDDVFAEVNRYFIEQ 168 (282)
T ss_pred HHHHHHHHHcCCCEEEE--cCCCCCCccc---cCCCcccHHHHHHHHHHHH
Confidence 56677788899999988 6788643321 1123578999997777643
No 81
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=25.11 E-value=1.9e+02 Score=27.15 Aligned_cols=34 Identities=9% Similarity=0.074 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeec
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTS 299 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tS 299 (527)
.-..++.+|-++|.|++..|+... .++...++.+
T Consensus 107 ~~~~~~~~i~~~l~~LH~~~i~H~--dl~p~nili~ 140 (267)
T cd08229 107 TVWKYFVQLCSALEHMHSRRVMHR--DIKPANVFIT 140 (267)
T ss_pred HHHHHHHHHHHHHHHHHHCCeecC--CCCHHHEEEc
Confidence 345678899999999999887643 3333444443
No 82
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=24.89 E-value=1.5e+02 Score=32.34 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHHHH-----------HHHHHHHhhc
Q 009728 214 NPDPQRLIRAYCQSAA-----------TLNLLRAFAT 239 (527)
Q Consensus 214 ~PDP~Rll~aY~~Saa-----------tLn~lRa~~~ 239 (527)
.-||-|||+++..++. |+++|+....
T Consensus 129 ~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~ 165 (409)
T PRK10885 129 AEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVA 165 (409)
T ss_pred hhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhh
Confidence 5799999999988764 6777776654
No 83
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=24.36 E-value=1.8e+02 Score=28.25 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=40.2
Q ss_pred eeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCc---eEEEc
Q 009728 355 IKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQI---VTWVS 415 (527)
Q Consensus 355 vKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~---ViW~c 415 (527)
+=+|+..+++++++.++..+|+ +..|+=+-...+ ..+..+|+++++.|.+ .||+.
T Consensus 116 i~LG~~vp~e~~v~~~~~~~pd-----~v~lS~~~~~~~-~~~~~~i~~l~~~~~~~~v~i~vG 173 (197)
T TIGR02370 116 IDLGRDVPIDTVVEKVKKEKPL-----MLTGSALMTTTM-YGQKDINDKLKEEGYRDSVKFMVG 173 (197)
T ss_pred EECCCCCCHHHHHHHHHHcCCC-----EEEEccccccCH-HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 3379999999999999999996 444443322234 3478999999999864 56665
No 84
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=24.27 E-value=1.1e+02 Score=33.57 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHH-----HHHHhhHH
Q 009728 214 NPDPQRLIRAYCQSAA--------TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRV-----DEALGFMS 280 (527)
Q Consensus 214 ~PDP~Rll~aY~~Saa--------tLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i-----~~al~Fm~ 280 (527)
.-||-|||+|...++. |.+.|+..+.. +.+.+..+-|+++.+-+ ..++.+|.
T Consensus 165 ~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~~a~~---------------L~~vs~eRI~~El~Kll~~~~~~~~l~~L~ 229 (410)
T TIGR01942 165 QEDPVRMLRALRFSVKLEFTIDESTARPIRESAPL---------------LKGIPPARLFEEILKLLFSGRSAALFRMLC 229 (410)
T ss_pred cccHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHH---------------HhcCCHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5699999999999986 88888865421 12222223344444433 46778888
Q ss_pred HhCCCC
Q 009728 281 AAGLTV 286 (527)
Q Consensus 281 a~G~~~ 286 (527)
.+|+-.
T Consensus 230 ~~gll~ 235 (410)
T TIGR01942 230 GYQLLE 235 (410)
T ss_pred HcCCHH
Confidence 888754
No 85
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=23.88 E-value=1.1e+02 Score=34.11 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHhC-------CCC--CCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc-ccCCCC
Q 009728 360 KMDPNELVKLIEILN-------PQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT-IKAPCG 428 (527)
Q Consensus 360 ~~~p~elv~L~~~Ln-------P~~--~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G 428 (527)
.+|++|+..+.+.+- ... ..+.+.=+.=.|-+.- ..-+.+.-.|.+.|.+| |||||- +++.+|
T Consensus 50 G~t~eEi~~lt~Am~~sg~~i~~~~~d~~~~~vDkhgTGGdG~-niS~~~a~ivAa~Gv~V-----aKhg~R~lss~~G 122 (440)
T PRK05820 50 GMTRPERVALTLAMRDSGEVLDWSSLNLNGPIVDKHSTGGVGD-KISLMLAPMVAACGGYV-----PMISGRGLGHTGG 122 (440)
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCccccCCCCeEEEcCCCCCCc-cHHHHHHHHHHhCCCCE-----EeeCCCCCCCccc
Confidence 689999999888632 111 0233322222322211 34556677788899999 799995 455556
No 86
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=23.85 E-value=1.6e+02 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=39.5
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH----hhChHHHHHHHHc-CCceEEE
Q 009728 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMR----VKLPHLIRAVRRS-GQIVTWV 414 (527)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~----~~LP~LI~AV~~a-G~~ViW~ 414 (527)
-|-.++++++.++++.|......+-||| .|-+=.. +.|-.+++.+++. |.+.+|+
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~---sGGEPllq~~~~~l~~ll~~~k~~~~~~~~~~ 101 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTL---SGGDPLYPRNVEELIELVKKIKAEFPEKDIWL 101 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEE---eChhhCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 4778998888888888876653455666 5666554 4577888888876 5666776
No 87
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=23.79 E-value=82 Score=35.52 Aligned_cols=83 Identities=14% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHh-------CCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCC-cccCCCCccc
Q 009728 360 KMDPNELVKLIEIL-------NPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGN-TIKAPCGLKT 431 (527)
Q Consensus 360 ~~~p~elv~L~~~L-------nP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGN-T~~~~~G~KT 431 (527)
.+|++|+..|.+.+ +.+. +.+.=+.=.|-+.-...-+.++--|.+.|.+| ||||| .+++.+|
T Consensus 132 G~t~~Ei~~lt~AM~~sg~~l~~~~--~~~vDkhgTGGd~gnk~ni~~apIvAA~Gv~V-----aKhsnRaits~sG--- 201 (493)
T TIGR02645 132 GMTMDEIEALTIAMADTGEMLEWDR--EPIMDKHSIGGVPGNKTSLIVVPIVAAAGLLI-----PKTSSRAITSAAG--- 201 (493)
T ss_pred CCCHHHHHHHHHHHHHhCCCccCCC--CCeEEEeCCCCCCCCCEeHHHHHHHHhCCCCe-----eeeCCCCcCCCcc---
Confidence 48999999888753 3322 33444444443311122234666678999998 89999 4445444
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccc
Q 009728 432 RPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTEC 470 (527)
Q Consensus 432 R~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTEC 470 (527)
..|+.++. | .+|++.+++-+|
T Consensus 202 ------------TAD~LE~L-----g-~v~ls~e~~~~~ 222 (493)
T TIGR02645 202 ------------TADTMEVL-----T-RVALSAEEIKRI 222 (493)
T ss_pred ------------HHHHHHHh-----c-CCCCCHHHHHHH
Confidence 56666666 3 788888876665
No 88
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=23.57 E-value=1.3e+02 Score=31.58 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccccccCCCCCcccCCCCceeeccccCCCCchhH
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWVGERTRQLDGAHV 343 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~altR~d~~~g~~Y~~SaH~lWIGeRTRqlDgAHV 343 (527)
+-+++.+..-+|-.-...+|.| .+++-..|--|+=.|=++.+-. ++.. |..| +-.|.|- -+
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfD-------gVeih~ahGyLl~qFlSp~~N~--R~D~-yGGs-----lenR~rf----~~ 206 (338)
T cd02933 146 EIPGIVADFRQAARNAIEAGFD-------GVEIHGANGYLIDQFLRDGSNK--RTDE-YGGS-----IENRARF----LL 206 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchhHHHhcCCccCC--CCCc-CCCc-----HHHhhhH----HH
Confidence 3445666666666666777875 4578888877776666665422 1222 3322 2256664 34
Q ss_pred HHhhhccC-----cceeeeCCC---------CCHHHHHHHHHHhCCC
Q 009728 344 EFLKGVAN-----PLGIKVSDK---------MDPNELVKLIEILNPQ 376 (527)
Q Consensus 344 eflrgI~N-----PIGvKvGP~---------~~p~elv~L~~~LnP~ 376 (527)
|-++.|++ |||||+++. .+.+|.+++++.|.-.
T Consensus 207 eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~ 253 (338)
T cd02933 207 EVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKR 253 (338)
T ss_pred HHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55655553 799999753 4778888888888544
No 89
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=22.97 E-value=1.9e+02 Score=32.00 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCCChhHHHHHHHHHHH-----------HHHHHHHhh
Q 009728 213 RNPDPQRLIRAYCQSAA-----------TLNLLRAFA 238 (527)
Q Consensus 213 R~PDP~Rll~aY~~Saa-----------tLn~lRa~~ 238 (527)
=.-||-|||+|+..++. |+.+|+...
T Consensus 128 F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~ 164 (417)
T PRK13298 128 FIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMV 164 (417)
T ss_pred cccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHh
Confidence 36799999999988874 888888665
No 90
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=22.88 E-value=1.2e+02 Score=33.83 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCC-CcEEEEeccChhHH--HhhChHHHHHHHHcCCceEEEcCCCCCCcc--c-CCCCcccc
Q 009728 359 DKMDPNELVKLIEILNPQNKP-GRITIITRMGAENM--RVKLPHLIRAVRRSGQIVTWVSDPMHGNTI--K-APCGLKTR 432 (527)
Q Consensus 359 P~~~p~elv~L~~~LnP~~~p-GRLTLI~RmGa~~v--~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~--~-~~~G~KTR 432 (527)
=+++++.|.++|+.-.+.+.+ =++++.+=++.++. -..+..+-+.-++.|.+|+-=+==.+||.. + -..|+|-+
T Consensus 159 gnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~ 238 (460)
T PRK13237 159 GNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDK 238 (460)
T ss_pred CCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCC
Confidence 468999999888743332221 14455555432222 123455566667777777543334458872 2 24789999
Q ss_pred chhHHHHHHHHHHHHH
Q 009728 433 PFDSIRAEVRAFFDVH 448 (527)
Q Consensus 433 ~f~~Il~Ev~~ff~vh 448 (527)
...+|+.|+-.|.|+.
T Consensus 239 ~i~ei~~e~~s~aD~~ 254 (460)
T PRK13237 239 SIKEIVHEMFSYADGC 254 (460)
T ss_pred cHhHHhhhccCcCcEE
Confidence 9999999998886654
No 91
>PRK08136 glycosyl transferase family protein; Provisional
Probab=22.77 E-value=67 Score=33.95 Aligned_cols=88 Identities=14% Similarity=0.238 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHhCCCC----CCC---cEEEEeccChhHH-HhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCcccc
Q 009728 361 MDPNELVKLIEILNPQN----KPG---RITIITRMGAENM-RVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTR 432 (527)
Q Consensus 361 ~~p~elv~L~~~LnP~~----~pG---RLTLI~RmGa~~v-~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR 432 (527)
-|+|||.-.++.+.-.- .|. .+.-|+=+|-++- -...+..---+.++|.+|+ +|||--.++ |
T Consensus 54 ET~eElaG~~~a~~~~~~~~~~~~~~~~~iD~~gtgGd~~t~nist~aA~vlA~~G~~V~-----kHGnr~vss---k-- 123 (317)
T PRK08136 54 ESEAEMLGFLDAMQAHTIPLTPPAGRPMPVVIPSYNGARKQANLTPLLALLLAREGVPVL-----VHGVSEDPT---R-- 123 (317)
T ss_pred CCHHHHHHHHHHHHHhCCcCCCCCCCCceEEeCCCCCCCCCcChHHHHHHHHHHCCCeEE-----EECCCCCCC---c--
Confidence 46888888877554221 221 2455555555421 1112222333577899997 899965442 1
Q ss_pred chhHHHHHHHHHHHHHHhhCCcCccceeeecCCCcccccC
Q 009728 433 PFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIG 472 (527)
Q Consensus 433 ~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECvG 472 (527)
.+--||.++. ||-++++++++.+|+.
T Consensus 124 ---------~gsadvleaL-----Gi~~~~~~~~~~~~l~ 149 (317)
T PRK08136 124 ---------VTSAEIFEAL-----GIPPTLHADQAQAKLA 149 (317)
T ss_pred ---------ccHHHHHHHc-----CCCCCCCHHHHHHHHH
Confidence 1223444444 7888999999999964
No 92
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=22.36 E-value=1e+02 Score=33.72 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHH--------HHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHH--HHHHHHhhHHHhC
Q 009728 214 NPDPQRLIRAYCQSAA--------TLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAG 283 (527)
Q Consensus 214 ~PDP~Rll~aY~~Saa--------tLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G 283 (527)
.-||-|||+|+..++. |++.|+.... .+..+......+++..+.. ....++++|..+|
T Consensus 167 ~eDPlRiLRa~Rfaa~lgf~i~~~T~~~i~~~~~------------~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~g 234 (466)
T TIGR02692 167 GDDPLRMLRAARFVSQLGFEVAPRVRAAMTEMAD------------QIERISAERVRVELDKLLLGDHPRAGIDLMVETG 234 (466)
T ss_pred hhChHHHHHHHHHHHHhCCCcCHHHHHHHHHHHH------------HHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhh
Confidence 5689999999998764 6666664332 1111111112223333321 2235788888888
Q ss_pred CCCC
Q 009728 284 LTVD 287 (527)
Q Consensus 284 ~~~~ 287 (527)
+-..
T Consensus 235 lL~~ 238 (466)
T TIGR02692 235 LADR 238 (466)
T ss_pred hhhh
Confidence 7654
No 93
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=21.77 E-value=1.1e+02 Score=33.02 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=43.9
Q ss_pred hhHHHhhhccC--cceeeeCCCCCHHHHHHHHHHhCCCC-----C-C----CcEEEEeccChhHHHhhChHHHHHHHHcC
Q 009728 341 AHVEFLKGVAN--PLGIKVSDKMDPNELVKLIEILNPQN-----K-P----GRITIITRMGAENMRVKLPHLIRAVRRSG 408 (527)
Q Consensus 341 AHVeflrgI~N--PIGvKvGP~~~p~elv~L~~~LnP~~-----~-p----GRLTLI~RmGa~~v~~~LP~LI~AV~~aG 408 (527)
..|+.+|...+ ||+||.++..+++++.++++.-.++- . . +++.++...|--.+ ..||.+.+++++.|
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~-~~L~~v~~~~~~~~ 281 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTE-LGLARAHQALVKNG 281 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHH-HHHHHHHHHHHHcC
Confidence 46788888877 99999999989999999998875542 1 1 11222222333222 55677777776654
No 94
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.49 E-value=1.4e+02 Score=30.91 Aligned_cols=95 Identities=25% Similarity=0.322 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++.+..-+|-.....+|.| .+++-..|--|+=.|=++.+ |.|...|. +-.|.|.+ -.
T Consensus 148 eI~~ii~~~~~aA~~a~~aGfD-------gVei~~~~gyLl~qFlsp~~N~R~D~yGgs----------l~nr~rf~-~e 209 (336)
T cd02932 148 EIAEVVDAFVAAARRAVEAGFD-------VIEIHAAHGYLLHQFLSPLSNKRTDEYGGS----------LENRMRFL-LE 209 (336)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccccHHHHhcCCccCCCCcccCCC----------HHHHhHHH-HH
Confidence 3455666666666666677875 35777777666655555543 43432222 23577654 23
Q ss_pred hHHHhhhc---cCcceeeeCC------CCCHHHHHHHHHHhCCC
Q 009728 342 HVEFLKGV---ANPLGIKVSD------KMDPNELVKLIEILNPQ 376 (527)
Q Consensus 342 HVeflrgI---~NPIGvKvGP------~~~p~elv~L~~~LnP~ 376 (527)
.|+=+|.. .-||+||++| ..+++|.+++++.|...
T Consensus 210 iv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~ 253 (336)
T cd02932 210 VVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKEL 253 (336)
T ss_pred HHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHc
Confidence 33333322 2389999985 46788899988888643
No 95
>PRK06049 rpl30p 50S ribosomal protein L30P; Reviewed
Probab=21.42 E-value=99 Score=29.73 Aligned_cols=110 Identities=24% Similarity=0.405 Sum_probs=68.2
Q ss_pred ccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHH--HHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHHH-
Q 009728 77 KSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEA--RSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFRI- 153 (527)
Q Consensus 77 r~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei--~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~- 153 (527)
+=...-|-...+|.++ +...|+...|+|+.+|+ ..+++.|.. +|+ +-|+. ..|.+.|.+++.+
T Consensus 26 gL~ki~~~V~v~~tp~---~~GML~kV~~~V~~ge~~~~tv~~Li~k--RG~---~~g~~------~ltd~~i~e~~g~~ 91 (154)
T PRK06049 26 RLHRVNHCVLVPETPS---YKGMLQKVKDYVTWGEIDADTLAELLRK--RGR---LEGNK------KLTDEYVKENTGYD 91 (154)
T ss_pred CCCcCCCEEEEeCCHH---HHHHHHhhhceeEEeeCchHHHHHHHHH--hCc---ccCCC------CCCHHHHHHhcCCc
Confidence 3334456677777755 45566667799999984 556666664 454 43432 5556666665554
Q ss_pred -HHHHHHHHhhcC--------CCceEEecccccccCCCCCCcccccCCeecccccCCcCC
Q 009728 154 -LLQMGVVLMFGG--------QMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (527)
Q Consensus 154 -LlqMa~vL~~g~--------~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 204 (527)
+..|+..|..+. =+|+.|+-=--|-|.+ ...+| .+|-.+- ||||.||
T Consensus 92 ~iedl~~~i~~~~~~fk~~~~~~~~FrL~pPr~G~~~-~k~~~--~~gG~~G-~r~~~In 147 (154)
T PRK06049 92 SIEELAEALVEGEIKLKDLPGLKPVFRLHPPRGGFGG-IKRPF--KEGGELG-YRGEKIN 147 (154)
T ss_pred cHHHHHHHHHhCCCCHHHhhcccCceecCCcchhhhh-ccccc--ccCCCCC-ccHHHHH
Confidence 666766665433 3567776666677843 33444 3454555 9999999
No 96
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=21.29 E-value=1.1e+02 Score=29.58 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=23.4
Q ss_pred hhHHHhhhc-cCcceeee--CCCCCHHHHHHHHHH
Q 009728 341 AHVEFLKGV-ANPLGIKV--SDKMDPNELVKLIEI 372 (527)
Q Consensus 341 AHVeflrgI-~NPIGvKv--GP~~~p~elv~L~~~ 372 (527)
.+|+.|+.+ +.|++||+ |++ |.++++++++.
T Consensus 162 ~~v~~~~~~~~~~v~ik~aGGik-t~~~~l~~~~~ 195 (203)
T cd00959 162 EDVKLMKEAVGGRVGVKAAGGIR-TLEDALAMIEA 195 (203)
T ss_pred HHHHHHHHHhCCCceEEEeCCCC-CHHHHHHHHHh
Confidence 566666555 56999999 466 78999998876
No 97
>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]
Probab=21.07 E-value=76 Score=33.16 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=75.2
Q ss_pred CCCCchhHHH-hhhccCcceeeeCCCCCHHHHHHHH--HHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCce-
Q 009728 336 RQLDGAHVEF-LKGVANPLGIKVSDKMDPNELVKLI--EILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIV- 411 (527)
Q Consensus 336 RqlDgAHVef-lrgI~NPIGvKvGP~~~p~elv~L~--~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~V- 411 (527)
||+ ++-|+. .+-|.-|-|+|. .-|++++.+| +..+|.+..-|-.+|-||=- |.--+-.-++....---.|
T Consensus 117 ~~P-~~Fv~~~~~Cv~f~~t~Kn---iVpe~~v~~i~~dm~elk~k~kRtR~~Qr~~P--i~~tc~a~le~m~k~a~~VI 190 (291)
T KOG3943|consen 117 LRP-FQFVESGANCVVFIRTLKN---IVPEKLVHHILQDMYELKTKKKRTRVIQRMLP--ISGTCKAFLEDMKKYAETVI 190 (291)
T ss_pred cCc-hhhhhccCceEEeecccCc---cCchHHHHHHHHHHHhhhccchhhhhhhhhcc--ccchHHhhHHHHHHHHHHhh
Confidence 444 444442 123444555554 5688888876 34789888878888887741 1111111122222111223
Q ss_pred -EEEcCCCCCCcccCCCCccccchhHHHHH--HHHHHHHHHhhCCcCccceeeecCCCcc---cccC
Q 009728 412 -TWVSDPMHGNTIKAPCGLKTRPFDSIRAE--VRAFFDVHEQEGSHPGGVHLEMTGQNVT---ECIG 472 (527)
Q Consensus 412 -iW~cDPMHGNT~~~~~G~KTR~f~~Il~E--v~~ff~vh~~~Gs~~GGlHLE~Tg~~VT---ECvG 472 (527)
=|.=||=-|---+=+=-+|.|.|+.|-+| |+.--++.-.+|+-. -+-++--||| ||.-
T Consensus 191 ~p~fkap~tgK~~tf~VE~k~RNn~~v~r~~vi~~V~~~Vc~l~se~---~VdL~n~D~t~~Ve~~k 254 (291)
T KOG3943|consen 191 EPWFKAPNTGKKGTFQVEYKSRNNSHVNREEVIREVAGIVCTLNSEN---KVDLTNPDYTVVVEIIK 254 (291)
T ss_pred cccccCCCCCcCceEEEEEEeccccchhHHHHHHHHHHHHHhcCccc---eeeccCCCeEEEEEeee
Confidence 38888866632222336999999987654 566667777777776 7778888876 6643
No 98
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=21.02 E-value=2.2e+02 Score=22.84 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.6
Q ss_pred hCCCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEE----ecccccc
Q 009728 123 AMGKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVK----VGRMAGQ 178 (527)
Q Consensus 123 A~G~AFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVk----VGRiAGQ 178 (527)
..|...++- =...++|.+++.+.+.+-++++.++...|....+.+-+. -|-.+||
T Consensus 17 ~~gh~lIip-k~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~ 75 (86)
T cd00468 17 APGHVLVCP-KRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQ 75 (86)
T ss_pred CCCcEEEeC-chhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCC
Confidence 446666665 667889999999999999999999999886554444343 3556666
No 99
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=21.00 E-value=1.1e+02 Score=30.63 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=49.9
Q ss_pred hhHHHhhh---ccCccee--eeCCCCCHHH-HHHHHHHhCCCCCCCcEEEEeccCh----------------hHHHhhCh
Q 009728 341 AHVEFLKG---VANPLGI--KVSDKMDPNE-LVKLIEILNPQNKPGRITIITRMGA----------------ENMRVKLP 398 (527)
Q Consensus 341 AHVeflrg---I~NPIGv--KvGP~~~p~e-lv~L~~~LnP~~~pGRLTLI~RmGa----------------~~v~~~LP 398 (527)
.||.++-+ |.|+-|+ .+-|.+..++ +.++++.|+= ..+ .+.++-=.+. +++.+.|.
T Consensus 98 ~~i~~~~~g~~v~~~~g~t~~~~~~~~~~~~~~~~~~~l~~-~~~-~~v~~~~~~~D~~GH~~~~~~~~~~ie~~D~~l~ 175 (252)
T PF01676_consen 98 GGIADFFGGMDVISVEGATGDVDPDMSAKEIAEAAIEALKK-DKY-DFVFVHVKGTDEAGHRGDPEAYIEAIERIDRFLG 175 (252)
T ss_dssp HHHHHHTTTEEEE--STSSCCGSTTTTHHHHHHHHHHHHHH-TTS-SEEEEEEEHHHHHHTTT-HHHHHHHHHHHHHHHH
T ss_pred ceeHHHhCCcccccccccccccccchhhHHHHHHHHHhhhc-ccC-CeEEEeecCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 45666555 3444444 4456665555 3566777721 111 2555543332 24567899
Q ss_pred HHHHHHHHcCCceEEEcCCCCCCcccCCC
Q 009728 399 HLIRAVRRSGQIVTWVSDPMHGNTIKAPC 427 (527)
Q Consensus 399 ~LI~AV~~aG~~ViW~cDPMHGNT~~~~~ 427 (527)
.|+++++..+-.++-.+| |||-.+...
T Consensus 176 ~l~~~~~~~~~~liiTaD--Hg~~~~~~~ 202 (252)
T PF01676_consen 176 RLLEALDKEDDLLIITAD--HGNDETMGH 202 (252)
T ss_dssp HHHHHHHHTTEEEEEEES--SBSTTTSBS
T ss_pred HHHHHHhcCCCEEEEECC--CCCccccCC
Confidence 999999888887777777 999766643
No 100
>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]
Probab=20.91 E-value=1.3e+02 Score=32.28 Aligned_cols=61 Identities=33% Similarity=0.513 Sum_probs=42.9
Q ss_pred CcEEEEeccCh----h-HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCC
Q 009728 380 GRITIITRMGA----E-NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGS 453 (527)
Q Consensus 380 GRLTLI~RmGa----~-~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs 453 (527)
|==+.|+||+. . --.+.+|..|+--++ |.+. |.|| +|++||++-.+-+=+++|-.|... |+
T Consensus 176 ~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~-~~~~-----~i~g------~g~~~rs~l~veD~~ea~~~v~~K-g~ 241 (331)
T KOG0747|consen 176 GLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMR-GKEY-----PIHG------DGLQTRSYLYVEDVSEAFKAVLEK-GE 241 (331)
T ss_pred CCcEEEEeccCccCCCcChHHHhHHHHHHHHh-CCCc-----ceec------CcccceeeEeHHHHHHHHHHHHhc-CC
Confidence 33489999972 2 224668888873222 2221 6788 899999999988888888888777 76
No 101
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=20.30 E-value=4.6e+02 Score=24.56 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHH
Q 009728 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSI 437 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~I 437 (527)
||. ++-..++++.|+=.+.++=.-+|.. .+ +.-|.+++++.++||.+- .||=+- ..+....-+.+
T Consensus 15 gp~--~~~t~~~l~~L~~~~ikaTfFv~g~----~~-~~~~~~~~~i~~~Gheig-----~Ht~~H---~~~~~~~~~~~ 79 (191)
T TIGR02764 15 SWG--NDYTEPILDTLKEYDVKATFFLSGS----WA-ERHPELVKEIVKDGHEIG-----SHGYRH---KNYTTLEDEKI 79 (191)
T ss_pred CCC--cccHHHHHHHHHHcCCCEEEEeccH----HH-HHCHHHHHHHHhCCCEEE-----ECCcCC---CCcccCCHHHH
Confidence 554 3334456666766778765555543 34 457999999999999763 344332 23555677899
Q ss_pred HHHHHHHHHHHHhhC
Q 009728 438 RAEVRAFFDVHEQEG 452 (527)
Q Consensus 438 l~Ev~~ff~vh~~~G 452 (527)
.+||....++.++..
T Consensus 80 ~~ei~~~~~~l~~~~ 94 (191)
T TIGR02764 80 KKDILRAQEIIEKLT 94 (191)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988753
No 102
>PLN02210 UDP-glucosyl transferase
Probab=20.13 E-value=1.7e+02 Score=32.03 Aligned_cols=78 Identities=18% Similarity=0.347 Sum_probs=50.1
Q ss_pred CCCCchhHHHhhhccCcceeeeCCCCCH----H-H--------------HHHHHHHhCCCCCCCcEEEEeccChhH--HH
Q 009728 336 RQLDGAHVEFLKGVANPLGIKVSDKMDP----N-E--------------LVKLIEILNPQNKPGRITIITRMGAEN--MR 394 (527)
Q Consensus 336 RqlDgAHVeflrgI~NPIGvKvGP~~~p----~-e--------------lv~L~~~LnP~~~pGRLTLI~RmGa~~--v~ 394 (527)
.+|++..+++++.. .| -.-|||...+ + + =.+.++-| +..|.+=++..=||.-. =.
T Consensus 209 ~eLE~~~~~~l~~~-~~-v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl--d~~~~~svvyvsfGS~~~~~~ 284 (456)
T PLN02210 209 YELESEIIESMADL-KP-VIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWL--DKQARSSVVYISFGSMLESLE 284 (456)
T ss_pred HHHhHHHHHHHhhc-CC-EEEEcccCchhhcCcccccccccccccccccchHHHHHH--hCCCCCceEEEEecccccCCH
Confidence 47888888888764 23 3668888631 1 0 01234556 33444545555677532 23
Q ss_pred hhChHHHHHHHHcCCceEEEcCC
Q 009728 395 VKLPHLIRAVRRSGQIVTWVSDP 417 (527)
Q Consensus 395 ~~LP~LI~AV~~aG~~ViW~cDP 417 (527)
+.+-.+..+.+++|++++|++.|
T Consensus 285 ~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 285 NQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeC
Confidence 55778899999999999999875
No 103
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=20.07 E-value=72 Score=26.61 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=13.9
Q ss_pred CCceEEEcCCCCCCcccCC
Q 009728 408 GQIVTWVSDPMHGNTIKAP 426 (527)
Q Consensus 408 G~~ViW~cDPMHGNT~~~~ 426 (527)
..||+-.| |+|||...++
T Consensus 28 ~~PvtI~C-P~HG~~~~s~ 45 (60)
T PF05265_consen 28 ATPVTIRC-PKHGNFTCST 45 (60)
T ss_pred CCceEEEC-CCCCcEEecc
Confidence 45788787 9999987664
No 104
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=20.02 E-value=1.4e+02 Score=32.33 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=8.1
Q ss_pred cCCceEEEcCCCCCCc
Q 009728 407 SGQIVTWVSDPMHGNT 422 (527)
Q Consensus 407 aG~~ViW~cDPMHGNT 422 (527)
++.+| ++|||||-+
T Consensus 175 ~~lkV--vvD~~~G~~ 188 (448)
T PRK14315 175 DGLRV--VVDCANGAA 188 (448)
T ss_pred CCCEE--EEECCCchH
Confidence 45554 457777754
Done!