Query 009728
Match_columns 527
No_of_seqs 142 out of 457
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rzi_A Probable 3-deoxy-D-arab 100.0 4E-209 1E-213 1605.7 37.8 434 73-512 26-462 (462)
2 3tqk_A Phospho-2-dehydro-3-deo 97.8 0.0028 9.7E-08 65.3 22.5 177 320-514 148-345 (346)
3 1of8_A Phospho-2-dehydro-3-deo 97.8 0.0014 4.9E-08 68.0 19.5 169 328-514 174-365 (370)
4 1n8f_A DAHP synthetase; (beta/ 97.6 0.0004 1.4E-08 71.6 12.3 171 325-514 156-349 (350)
5 3sz8_A 2-dehydro-3-deoxyphosph 93.8 0.25 8.6E-06 49.6 9.8 89 326-420 111-205 (285)
6 3fs2_A 2-dehydro-3-deoxyphosph 93.3 0.27 9.2E-06 49.7 9.0 89 326-420 132-224 (298)
7 3nvt_A 3-deoxy-D-arabino-heptu 89.7 0.29 9.9E-06 50.8 4.9 89 326-420 226-321 (385)
8 3tml_A 2-dehydro-3-deoxyphosph 89.3 0.43 1.5E-05 48.0 5.6 90 326-420 108-206 (288)
9 2nwr_A 2-dehydro-3-deoxyphosph 84.5 0.39 1.3E-05 47.6 2.2 87 326-421 95-187 (267)
10 1zco_A 2-dehydro-3-deoxyphosph 82.3 3.2 0.00011 40.7 7.7 92 326-423 107-205 (262)
11 1vs1_A 3-deoxy-7-phosphoheptul 72.3 4.3 0.00015 40.3 5.4 93 326-422 122-219 (276)
12 1o60_A 2-dehydro-3-deoxyphosph 71.5 2.8 9.7E-05 41.9 3.9 97 326-428 109-211 (292)
13 3pzs_A PM kinase, pyridoxamine 62.9 5.2 0.00018 38.5 3.7 66 357-422 53-120 (289)
14 3r88_A Anthranilate phosphorib 58.6 5.8 0.0002 41.0 3.4 87 360-471 72-168 (377)
15 3zs7_A Pyridoxal kinase; trans 57.6 5.2 0.00018 39.1 2.7 65 358-422 53-123 (300)
16 2qkf_A 3-deoxy-D-manno-octulos 56.2 8.3 0.00028 38.2 3.9 100 326-431 106-211 (280)
17 1vr6_A Phospho-2-dehydro-3-deo 54.7 15 0.0005 37.8 5.5 92 326-422 190-287 (350)
18 3hgj_A Chromate reductase; TIM 49.1 9.6 0.00033 38.3 3.1 92 264-376 146-251 (349)
19 2yxt_A Pyridoxal kinase; beta 45.7 19 0.00065 34.5 4.5 62 359-420 55-117 (312)
20 3rxz_A Polysaccharide deacetyl 45.4 59 0.002 31.3 8.0 83 358-456 59-142 (300)
21 3p0t_A Uncharacterized protein 43.6 1.1E+02 0.0039 26.1 8.7 95 125-231 40-134 (138)
22 3kru_A NADH:flavin oxidoreduct 42.7 25 0.00084 35.6 4.9 99 264-385 137-249 (343)
23 4a5z_A MITD1, MIT domain-conta 38.5 63 0.0022 30.2 6.6 68 365-432 53-126 (163)
24 3oix_A Putative dihydroorotate 38.2 25 0.00084 35.8 4.2 34 351-388 194-227 (345)
25 3gr7_A NADPH dehydrogenase; fl 38.1 18 0.00062 36.3 3.1 76 264-360 138-219 (340)
26 1jub_A Dihydroorotate dehydrog 36.8 69 0.0023 30.9 6.9 44 343-387 147-194 (311)
27 3l5a_A NADH/flavin oxidoreduct 34.6 20 0.00067 37.3 2.8 93 263-375 163-275 (419)
28 2ymb_A MITD1, MIT domain-conta 32.9 73 0.0025 31.6 6.4 92 319-432 116-214 (257)
29 1ccw_A Protein (glutamate muta 31.9 58 0.002 28.3 5.0 54 356-415 36-91 (137)
30 3ohe_A Histidine triad (HIT) p 31.4 2.6E+02 0.0089 24.3 9.8 84 136-227 44-129 (137)
31 3l5l_A Xenobiotic reductase A; 30.7 20 0.0007 36.1 2.1 90 264-374 152-256 (363)
32 1miw_A TRNA CCA-adding enzyme; 29.6 61 0.0021 33.3 5.5 60 216-287 154-223 (404)
33 4ef8_A Dihydroorotate dehydrog 29.2 22 0.00074 36.3 2.0 25 351-375 194-218 (354)
34 2yxb_A Coenzyme B12-dependent 29.1 1.2E+02 0.0039 27.2 6.6 53 357-415 52-106 (161)
35 2e6f_A Dihydroorotate dehydrog 28.7 30 0.001 33.5 2.8 32 343-374 149-184 (314)
36 1vfg_A A-adding enzyme, poly A 28.7 71 0.0024 32.5 5.7 63 215-287 148-220 (390)
37 2cc0_A Acetyl-xylan esterase; 28.5 1E+02 0.0034 27.8 6.2 55 362-422 135-189 (195)
38 3hp4_A GDSL-esterase; psychrot 28.2 1E+02 0.0035 26.1 5.8 26 391-416 86-111 (185)
39 2elc_A Trp D, anthranilate pho 27.2 30 0.001 35.0 2.6 87 360-471 46-140 (329)
40 2o6l_A UDP-glucuronosyltransfe 26.7 50 0.0017 28.1 3.6 53 362-418 7-61 (170)
41 1z41_A YQJM, probable NADH-dep 25.7 1.2E+02 0.0042 29.9 6.7 91 265-376 139-241 (338)
42 4hkm_A Anthranilate phosphorib 25.6 24 0.00082 35.7 1.6 86 360-471 52-147 (346)
43 2qtc_A Pyruvate dehydrogenase 25.0 45 0.0015 38.2 3.7 88 359-457 6-109 (886)
44 1vqu_A Anthranilate phosphorib 24.9 21 0.00073 36.7 1.1 85 360-471 73-177 (374)
45 2rf4_B DNA-directed RNA polyme 24.6 30 0.001 29.5 1.7 23 90-112 61-83 (87)
46 1csn_A Casein kinase-1; phosph 24.2 64 0.0022 29.3 4.0 46 264-311 107-159 (298)
47 3p94_A GDSL-like lipase; serin 23.7 65 0.0022 27.6 3.8 31 390-420 96-126 (204)
48 2prs_A High-affinity zinc upta 23.1 5E+02 0.017 24.8 11.0 60 353-422 199-259 (284)
49 3s6o_A Polysaccharide deacetyl 23.1 2E+02 0.0067 28.4 7.6 80 367-459 89-169 (321)
50 2o14_A Hypothetical protein YX 22.7 3.8E+02 0.013 26.7 9.7 63 378-441 229-304 (375)
51 3qbu_A Putative uncharacterize 22.5 1.9E+02 0.0065 28.3 7.3 77 363-455 76-153 (326)
52 2tpt_A Thymidine phosphorylase 22.4 23 0.0008 37.4 0.8 87 360-471 50-146 (440)
53 1f76_A Dihydroorotate dehydrog 21.4 51 0.0018 32.3 3.0 25 350-374 211-235 (336)
54 3i3w_A Phosphoglucosamine muta 21.1 1.3E+02 0.0045 31.0 6.1 65 353-422 108-184 (443)
55 3aql_A Poly(A) polymerase; tra 20.9 96 0.0033 32.2 5.0 60 216-287 178-247 (415)
56 3mil_A Isoamyl acetate-hydroly 20.6 1.5E+02 0.0051 25.9 5.6 30 391-420 96-125 (240)
57 3zwt_A Dihydroorotate dehydrog 20.6 51 0.0017 33.6 2.8 38 350-388 220-257 (367)
58 4e9i_A Glucose-6-phosphate 1-d 20.5 46 0.0016 36.3 2.6 59 114-201 295-354 (541)
59 2w43_A Hypothetical 2-haloalka 20.1 4E+02 0.014 22.5 8.6 67 362-441 130-197 (201)
No 1
>3rzi_A Probable 3-deoxy-D-arabino-heptulosonate 7-phosph synthase AROG; DAH7P synthase, shikimate pathway, aromatic biosynthesis; HET: PHE TRP; 1.95A {Mycobacterium tuberculosis} SCOP: c.1.10.8 PDB: 3kgf_A* 2b7o_A* 3nud_A* 3nue_A* 3nv8_A* 3pfp_A* 2w19_A 2w1a_A*
Probab=100.00 E-value=3.9e-209 Score=1605.69 Aligned_cols=434 Identities=48% Similarity=0.854 Sum_probs=427.2
Q ss_pred ccccccCccccCCCCCCHHHHHHHHHHhccCCCccCHHHHHHHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHHHHH
Q 009728 73 VDSWKSKKALQLPEYPDKEELESVLKTLDDFPPIVFAGEARSLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRDTFR 152 (527)
Q Consensus 73 p~sWr~~pa~QqP~ypD~~~l~~v~~~L~~lPPLV~a~Ei~~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~k~~ 152 (527)
++|||++|++|||.|| +++|+.|+++|+++|||||++||++||++||+||+|+|||||||||||+|++|++++|++|++
T Consensus 26 ~~sWr~~pa~QqP~yp-~~~l~~v~~~L~~~PPLV~a~Ei~~Lr~~La~va~G~AFlLQGGDCAEsF~~~~~~~ir~k~~ 104 (462)
T 3rzi_A 26 LDAALAKPAAQQPTWP-ADQALAMRTVLESVPPVTVPSEIVRLQEQLAQVAKGEAFLLQGGDCAETFMDNTEPHIRGNVR 104 (462)
T ss_dssp HHHHHTSCCTTCCCCC-HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHTTSCEEEEEECSSCCSTTCCHHHHHHHHH
T ss_pred ccchhhCCcccCCCCC-HHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHCCCEEEEeCccccCChhhcChHHHHHHHH
Confidence 4799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCCCCCCcCCCCCChhHHHHHHHHHHHHHH
Q 009728 153 ILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRNPDPQRLIRAYCQSAATLN 232 (527)
Q Consensus 153 ~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~~~f~~~aR~PDP~Rll~aY~~SaatLn 232 (527)
+|+|||+||+|++++|||||||||||||||||+++| |++||||||||||+++||+++|+|||+|||+||++|++|||
T Consensus 105 ~llqMa~vLt~g~~~PVVkvGRiAGQfAKPRSs~~E---Gv~LPsYRGD~VNg~~f~~~aR~PDP~Rll~aY~~SaatlN 181 (462)
T 3rzi_A 105 ALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADID---ALGLRSYRGDMINGFAPDAAAREHDPSRLVRAYANASAAMN 181 (462)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECSCCCCCCCSCSBC---TTSSBCCCCTTTSCSSSSHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCeEEecccccccCCCCCCCcC---CCcccccCCccccCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccccccccccchhhhcCChhhhHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc
Q 009728 233 LLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT 312 (527)
Q Consensus 233 ~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt 312 (527)
+||||++||||||+++++||++|+++++.+++|++|+++|++||+||++||++.+ .+.+++||||||||||+||+|||
T Consensus 182 llRa~~~gG~Adl~~~~~W~~~fv~~s~~~~~y~~la~~i~~al~Fm~a~G~~~~--~l~~~~~ytSHEaLlL~YE~alt 259 (462)
T 3rzi_A 182 LVRALTSSGLASLHLVHDWNREFVRTSPAGARYEALATEIDRGLRFMSACGVADR--NLQTAEIYASHEALVLDYERAML 259 (462)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTTCCCG--GGSCCCCEEEEECCCHHHHHHTE
T ss_pred HHHHhccCChhhhhccccchhhhcccChhhhHHHHHHHHHHHHHHHHHHcCCCcc--cccccceeechHhhccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999987 68899999999999999999999
Q ss_pred ccc---CCCCCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC
Q 009728 313 RLD---STSGLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG 389 (527)
Q Consensus 313 R~d---~~~g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG 389 (527)
|.| +.+|.|||||||||||||||||||||||||||||+|||||||||+|+|+||++||++|||+|+|||||||+|||
T Consensus 260 R~d~~~~~~g~~Y~~SaH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~elv~L~~~LnP~~epGRlTLI~RmG 339 (462)
T 3rzi_A 260 RLSDGDDGEPQLFDLSAHTVWIGERTRQIDGAHIAFAQVIANPVGVKLGPNMTPELAVEYVERLDPHNKPGRLTLVSRMG 339 (462)
T ss_dssp EECCC----CCEEETTCSEEEECTTTCCTTSHHHHHHHHCCSCEEEEECTTCCHHHHHHHHHHHCTTCCTTSEEEEECCC
T ss_pred cccccCCCCCCccccccccceeccccCCCCccHHHHHhcCCCCeeEeECCCCCHHHHHHHHHHhCCCCCCCeEEEEEccC
Confidence 999 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccc
Q 009728 390 AENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTE 469 (527)
Q Consensus 390 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTE 469 (527)
|+||+++||+||+||+++||+|||+||||||||+++++|+|||+|++|++||++||+||+++|+||||||||||||||||
T Consensus 340 a~kv~~~LP~li~aV~~~G~~VvW~cDPMHGNT~~~~~G~KTR~fd~Il~Ev~~ff~vh~~~Gt~~GGvHlE~TG~dVTE 419 (462)
T 3rzi_A 340 NHKVRDLLPPIVEKVQATGHQVIWQCDPMHGNTHESSTGFKTRHFDRIVDEVQGFFEVHRALGTHPGGIHVEITGENVTE 419 (462)
T ss_dssp TTTHHHHHHHHHHHHHHTSCCCEEEECCSTTSEEECTTSCEEEBHHHHHHHHHHHHHHHHHHTCCCCEEEEEBCSSCCCC
T ss_pred CchhhhhHHHHHHHHHHCCCCeEEEeCCCCCCceeCCCCCccCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccccccCCCCCCChHhHHHHHHHHHHHHHH
Q 009728 470 CIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 512 (527)
Q Consensus 470 CvGG~~~~~e~dL~~rY~T~CDPRLN~~QsLelaf~ia~~l~~ 512 (527)
|+||++.++|+||+.||+|+||||||++|||||||+||++|+.
T Consensus 420 C~GG~~~i~e~dL~~rY~T~CDPRLN~~QsLelAflvAe~l~~ 462 (462)
T 3rzi_A 420 CLGGAQDISETDLAGRYETACDPRLNTQQSLELAFLVAEMLRD 462 (462)
T ss_dssp SBBTTTTBCTTGGGTTCCCSSSCCBCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcccChhhhhhcccccCCcccCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999973
No 2
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=97.83 E-value=0.0028 Score=65.28 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=127.9
Q ss_pred CcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHH-HhCCCC-----CCCcEEE---------
Q 009728 320 LYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIE-ILNPQN-----KPGRITI--------- 384 (527)
Q Consensus 320 ~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~-~LnP~~-----~pGRLTL--------- 384 (527)
.|+.----|.|||-||-| +--|-|..+|+.-|||+|=|-+.+-++.+.-+. .=+|+. ..|+..+
T Consensus 148 qyv~dlvs~~aIGARt~e-nq~hre~asg~s~PVg~Kngt~gti~~ai~Ai~aa~~pH~Fl~~~~~G~~aiv~T~GN~~~ 226 (346)
T 3tqk_A 148 QYFAELITWGAIGARTVE-SQVHRELASGLSASIGFKNATNGDVQVAVDAVKSATYPHHFLSTTKSGSTAIFATKGNQNG 226 (346)
T ss_dssp GGTGGGCSEEEECGGGTT-CHHHHHHHTTCSSEEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSCEEEEECCCCSCE
T ss_pred HHHHHHhheeeeCccccc-CHHHHHHhcCCCCceEEeCCCCCchHHHhhHHHHHhCCceEEeeCCCCcEEEEECCCCCCE
Confidence 344434567899999999 479999999999999999999999888776555 346774 5566554
Q ss_pred --EeccChh---HHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccce
Q 009728 385 --ITRMGAE---NMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVH 459 (527)
Q Consensus 385 --I~RmGa~---~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlH 459 (527)
|-|=|.. -=.+.+-...++.+++|.+.--|.|.=|||. +-+-+.=-.|+++|-.-..- ....=||-
T Consensus 227 HvILRGg~~gpNY~~~~v~~a~~~l~k~~l~~~imVDcSH~NS-----~K~~~~Q~~V~~~v~~q~~~----~~~I~GvM 297 (346)
T 3tqk_A 227 HVILRGGASGPNFSKEHVDDCIAKLKKADINTKVMIDCSHGNS-----QKDHSKQISVLADICEQIKH----SNDIFGVM 297 (346)
T ss_dssp EEEECCCTTCCCCSHHHHHHHHHHHHHTTCCCCEEEESSHHHH-----TTCGGGHHHHHHHHHHHHHH----CSSEEEEE
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHhCCCCCeEEEecCcccc-----cccHHHHHHHHHHHHHHHhc----CCceeeee
Confidence 4576632 1234455677888899999999999999996 44556666777777654433 56678888
Q ss_pred eeecCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 460 LEMTGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 460 LE~Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
+|-- -..|.+.+... ...| .|--||=|+-+.+.+|...+|+.++.+|
T Consensus 298 iES~------l~~G~Q~~~~~--~l~yG~SITD~Ci~W~~T~~ll~~la~~v~~rr 345 (346)
T 3tqk_A 298 IESN------LVAGNQDINKK--PLTYGQSVTDKCVDFEETVKMLEMLAEAVQVRR 345 (346)
T ss_dssp EEBC------SEEEECCTTCS--SCCTTEESSSCBBCHHHHHHHHHHHHHHHHHHC
T ss_pred HHhh------hhccCCCCCCC--CCcCCccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 8721 12344444333 2345 5888999999999999999999998654
No 3
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=97.78 E-value=0.0014 Score=67.96 Aligned_cols=169 Identities=21% Similarity=0.250 Sum_probs=118.0
Q ss_pred ceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCCC-----CCC-----------cEEEEeccCh
Q 009728 328 FLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQN-----KPG-----------RITIITRMGA 390 (527)
Q Consensus 328 ~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~~-----~pG-----------RLTLI~RmGa 390 (527)
|.|||-||-+= --|.|..+|+.-|||+|=|-..++++.+.-+.. =.|+. ..| .+-||-|-|.
T Consensus 174 w~aIGARt~es-q~hre~Asgl~~PVg~Kngt~g~i~~~~~Ai~aa~~~H~Fl~v~~~G~a~~v~t~GN~~~~lilRG~~ 252 (370)
T 1of8_A 174 FGAIGARTTES-QLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGK 252 (370)
T ss_dssp EEEECTTTTTC-HHHHHHHHTCSSCEEEECCTTSCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCSCEEEEECCCT
T ss_pred hccccCccccc-HHHHHHHhcCCCeEEEcCCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEEcCCCCCEEEEECCCC
Confidence 34999999885 999999999999999999999999999876433 22332 111 4678888774
Q ss_pred ---hHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCC-cCccceeeecCCC
Q 009728 391 ---ENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGS-HPGGVHLEMTGQN 466 (527)
Q Consensus 391 ---~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs-~~GGlHLE~Tg~~ 466 (527)
.-=+..+.......++.|.+| |+||=|||..+ +-+.-..|..++++-.. .|. ..=||-+|.-.+
T Consensus 253 ~~~nY~~~~vd~~~~~l~~~~~pV--ivD~SHans~k-----~~~~Q~~V~~~~~a~ia----~G~d~i~GlmiEsh~~- 320 (370)
T 1of8_A 253 KGTNYDAKSVAEAKAQLPAGSNGL--MIDYSHGNSNK-----DFRNQPKVNDVVCEQIA----NGENAITGVMIESNIN- 320 (370)
T ss_dssp TCCCCSHHHHHHHHHHCCTTCCCE--EEESSGGGGTS-----CGGGHHHHHHHHHHHHH----TTCCSEEEEEEEBCSS-
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCE--EEeCcccchhh-----hhhhhhHHHHHHHHHHH----cCCCcceEEEEEecCC-
Confidence 122344555555667778774 69999997632 23444556666665543 332 345999997655
Q ss_pred cccccCCCCCCCccccc-ccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 467 VTECIGGSRTVTFDDLS-SRY-HTHCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 467 VTECvGG~~~~~e~dL~-~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
+|.+.+..+++. -.| .|--||=++-+.+..|...+|+.++.+|
T Consensus 321 -----dG~Q~l~~~~~~~L~yG~SitD~Ci~w~~T~~ll~~la~~~~~rr 365 (370)
T 1of8_A 321 -----EGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRR 365 (370)
T ss_dssp -----SBBCCC-------CCTTCBSSSCBBCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCChhhhhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 788888765543 355 5788999999999999999999998765
No 4
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=97.60 E-value=0.0004 Score=71.57 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=120.8
Q ss_pred CCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHH-hCCC-----------------CCCCcEEEEe
Q 009728 325 SAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEI-LNPQ-----------------NKPGRITIIT 386 (527)
Q Consensus 325 SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~-LnP~-----------------~~pGRLTLI~ 386 (527)
-.-|+|||-||-+ .-.|.+..+|+.-|||+|=|-..++++.+.-+.. =.|+ ..| .+-||-
T Consensus 156 ~vd~~qIGAR~~e-sq~hr~~asg~~~PVg~Kngt~g~i~~~l~Ai~aa~~~h~fl~~~~~G~~~~v~t~GN~-~~~lil 233 (350)
T 1n8f_A 156 LMSWGAIGARTTE-SQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHSAIVNTSGNG-DCHIIL 233 (350)
T ss_dssp GCSEEEECTTTTT-CHHHHHHHHTCSSCEEEECCTTCCSHHHHHHHHHHTSCCEEEEECTTSBEEEEEECCCS-CEEEEE
T ss_pred cCcEEEECCcccc-CHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHHHhCCceeeeeCCCCcEEEEECCCCC-CEEEEE
Confidence 3569999999876 5689999999999999999999999999987333 1222 122 467788
Q ss_pred ccChhHHHhhChH----HHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeee
Q 009728 387 RMGAENMRVKLPH----LIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEM 462 (527)
Q Consensus 387 RmGa~~v~~~LP~----LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~ 462 (527)
|-|.. ...+.. +.+..++.|.|.-=|+||=|||. |-+.+.=-.++.+|.+- ...--...-||-+|.
T Consensus 234 RG~~~--~ny~~~di~~~~~~l~~~~lp~~VivD~SH~ns-----~k~~~~Q~~vv~~laa~---ia~G~~~i~GlmiEs 303 (350)
T 1n8f_A 234 RGGKE--PNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANS-----SKQFKKQMDVCADVCQQ---IAGGEKAIIGVMVES 303 (350)
T ss_dssp CCSSS--CCCSHHHHHHHHHHHHHTTCCCCEEEECSGGGT-----TTCGGGHHHHHHHHHHH---HHTTCCSEEEEEEEB
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHcCCCCeEEEECCCccc-----CccccccHHHHHHHHHH---HHcCCCcccEEEEEe
Confidence 86642 333333 34456778998555899999993 44455555666666632 222224568999996
Q ss_pred cCCCcccccCCCCCCCcccccccc-ccCCCCCCChHhHHHHHHHHHHHHHHhh
Q 009728 463 TGQNVTECIGGSRTVTFDDLSSRY-HTHCDPRLNASQSLELAFIIAERLRKRR 514 (527)
Q Consensus 463 Tg~~VTECvGG~~~~~e~dL~~rY-~T~CDPRLN~~QsLelaf~ia~~l~~~~ 514 (527)
- =.+|.+.+... -...| .|--||-|+-+.+.+|...+|+.++.+|
T Consensus 304 h------l~dG~Q~l~~~-~~l~yG~SITD~Ci~w~~t~~ll~~la~~~~~r~ 349 (350)
T 1n8f_A 304 H------LVEGNQSLESG-EPLAYGKSITDACIGWEDTDALLRQLANAVKARR 349 (350)
T ss_dssp C------SSSBBCCSSSC-SCCCTTCBSSSCBBCHHHHHHHHHHHHHHHHHHH
T ss_pred c------cCCCCcCCCCC-ccccCCCcCccccCCHHHHHHHHHHHHHHHHHhc
Confidence 5 33666666442 22455 4788999999999999999999998653
No 5
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=93.79 E-value=0.25 Score=49.60 Aligned_cols=89 Identities=25% Similarity=0.366 Sum_probs=61.7
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 009728 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLI 401 (527)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~LI 401 (527)
.-++|||-|. |+.+ ++..+++..-||++|=|.+++++|+...++.+-=...+ +|+|+-| ||..+..--|-. |
T Consensus 111 vd~lqIgA~~~~n~~--LLr~va~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~-~i~L~erg~~y~~~~~~vdl~~-i 186 (285)
T 3sz8_A 111 ADVLQVPAFLARQTD--LVVAIAKAGKPVNVKKPQFMSPTQLKHVVSKCGEVGND-RVMLCERGSSFGYDNLVVDMLG-F 186 (285)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTSSCEEEECCTTSCGGGTHHHHHHHHHTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeCCCCCCCCcCccCHHH-H
Confidence 5588999865 4333 88889999999999999999999999999987322111 6888765 454441112333 2
Q ss_pred HHHHHc--CCceEEEcCCCCC
Q 009728 402 RAVRRS--GQIVTWVSDPMHG 420 (527)
Q Consensus 402 ~AV~~a--G~~ViW~cDPMHG 420 (527)
..+++. |.||+. ||=|.
T Consensus 187 ~~lk~~~~~~pV~~--D~sHs 205 (285)
T 3sz8_A 187 RQMAETTGGCPVIF--DVTHS 205 (285)
T ss_dssp HHHHHHTTSCCEEE--ETTTT
T ss_pred HHHHHhCCCCCEEE--eCCCc
Confidence 334554 788875 99896
No 6
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=93.28 E-value=0.27 Score=49.74 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec---cChhHHHhhChHHH
Q 009728 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR---MGAENMRVKLPHLI 401 (527)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R---mGa~~v~~~LP~LI 401 (527)
.-++|||-|- |+.+ .+..+++..-||++|=|-+++++|+...++.+-=...+ +|+|+-| ||.++.---|-. |
T Consensus 132 vd~lkIgA~~~~n~~--LLr~va~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~-~iiL~erg~~y~~~~~~vdl~~-i 207 (298)
T 3fs2_A 132 VDVLQIPAFLCRQTD--LLIAAARTGRVVNVKKGQFLAPWDMKNVLAKITESGNP-NVLATERGVSFGYNTLVSDMRA-L 207 (298)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTSEEEEECCTTCCGGGHHHHHHHHHTTTCC-CEEEEECCEECSSSCEECCTTH-H
T ss_pred CCEEEECccccCCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCCCccCHHH-H
Confidence 5688999865 3333 77889999999999999999999999999987432222 6888766 455441111333 3
Q ss_pred HHHHHcCCceEEEcCCCCC
Q 009728 402 RAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 402 ~AV~~aG~~ViW~cDPMHG 420 (527)
..+++.|.||+. ||=|.
T Consensus 208 ~~lk~~~~PV~~--D~sHs 224 (298)
T 3fs2_A 208 PIMAGLGAPVIF--DATHS 224 (298)
T ss_dssp HHHHTTTSCEEE--EHHHH
T ss_pred HHHHHcCCcEEE--cCCCc
Confidence 334557888876 88784
No 7
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=89.72 E-value=0.29 Score=50.80 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec-------cChhHHHhhCh
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR-------MGAENMRVKLP 398 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R-------mGa~~v~~~LP 398 (527)
..+++||-|+=+ +-.+++.+++..-||.+|=|-..+++|+..-++.+--...+ +|+|.-| ++.+.+ .|-
T Consensus 226 vd~lkIgs~~~~-n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~-~i~L~~rG~s~yp~~~~~~l--dl~ 301 (385)
T 3nvt_A 226 VDVIQIGARNMQ-NFELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNG-KIILCERGIRTYEKATRNTL--DIS 301 (385)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEECCBCCSCCSSSSBC--CTT
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCCCcccc--CHH
Confidence 568999999855 46899999999999999999999999999999998433222 6999988 233333 233
Q ss_pred HHHHHHHHcCCceEEEcCCCCC
Q 009728 399 HLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 399 ~LI~AV~~aG~~ViW~cDPMHG 420 (527)
.+..--+..|.|| ++||=||
T Consensus 302 ~i~~lk~~~~lpV--~~D~th~ 321 (385)
T 3nvt_A 302 AVPILKKETHLPV--MVDVTHS 321 (385)
T ss_dssp HHHHHHHHBSSCE--EEEHHHH
T ss_pred HHHHHHHhcCCCE--EEcCCCC
Confidence 3333223478887 9999998
No 8
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=89.26 E-value=0.43 Score=47.97 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=60.3
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCC-----CCcEEEEec---cChhHHHhh
Q 009728 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNK-----PGRITIITR---MGAENMRVK 396 (527)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~-----pGRLTLI~R---mGa~~v~~~ 396 (527)
.-++|||-|- |+.+ ++..+++..-||++|=|-+++++|+..-++.+--... ..+|+|.-| ||.+++---
T Consensus 108 vd~lkIgA~~~~n~~--LLr~~a~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vd 185 (288)
T 3tml_A 108 VDVLQTPAFLCRQTD--FIHACARSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSD 185 (288)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHTSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECC
T ss_pred CCEEEECcccccCHH--HHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCC
Confidence 5588999854 3333 6777999999999999999999999999998732111 125888765 555442011
Q ss_pred ChHHHHHHHHcCCceEEEcCCCCC
Q 009728 397 LPHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 397 LP~LI~AV~~aG~~ViW~cDPMHG 420 (527)
|-. |..+++.|.|| ++||=|.
T Consensus 186 l~~-i~~lk~~~~pV--~~D~sHs 206 (288)
T 3tml_A 186 MRS-LAIMRETNAPV--VFDATHS 206 (288)
T ss_dssp HHH-HHHGGGGSSCE--EEEHHHH
T ss_pred HHH-HHHHHhcCCcE--EEcCCcc
Confidence 222 22235578888 5688884
No 9
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=84.54 E-value=0.39 Score=47.60 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=61.9
Q ss_pred CCceeecc---ccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC---hhHHHhhChH
Q 009728 326 AHFLWVGE---RTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG---AENMRVKLPH 399 (527)
Q Consensus 326 aH~lWIGe---RTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG---a~~v~~~LP~ 399 (527)
.-++|||- ||-. .+..+++..-||++|=|-..+++|+..-++++.-...+ .+.||-|=+ .++..--|-
T Consensus 95 vd~~~IgA~~~rn~~----ll~~~a~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~-~i~L~~rG~~~~y~~~~~dl~- 168 (267)
T 2nwr_A 95 ADIIQIPAFLCRQTD----LLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAK-EIYLTERGTTFGYNNLVVDFR- 168 (267)
T ss_dssp CSEEEECGGGTTCHH----HHHHHHTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCS-SEEEEECCEECSSSCEECCTT-
T ss_pred CCEEEECcccccCHH----HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-
Confidence 45889998 5443 77778899999999999999999999999988533333 799999844 322001121
Q ss_pred HHHHHHHcCCceEEEcCCCCCC
Q 009728 400 LIRAVRRSGQIVTWVSDPMHGN 421 (527)
Q Consensus 400 LI~AV~~aG~~ViW~cDPMHGN 421 (527)
-|..+++.| +| ++||=|+|
T Consensus 169 ~i~~lk~~~-pV--ivD~sH~~ 187 (267)
T 2nwr_A 169 SLPIMKQWA-KV--IYDATHSV 187 (267)
T ss_dssp HHHHHTTTS-EE--EEETTGGG
T ss_pred HHHHHHHcC-CE--EEcCCccc
Confidence 344566667 55 57999999
No 10
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=82.31 E-value=3.2 Score=40.67 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=65.7
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHH----Hh--hChH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENM----RV--KLPH 399 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v----~~--~LP~ 399 (527)
.-++|||-|+=+ +-..++.+....-||++|=|-+.+++|++.-++.+.-...+ .+.|+-| |-... .. .|-
T Consensus 107 vd~~kIga~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~-~i~L~~R-G~~~~~~y~~~~v~L~- 182 (262)
T 1zco_A 107 SDILQIGARNSQ-NFELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNE-NVILCER-GIRTFETATRFTLDIS- 182 (262)
T ss_dssp CSEEEECGGGTT-CHHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCC-CEEEEEC-CBCCSCCSSSSBCCTT-
T ss_pred CCEEEECccccc-CHHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCC-eEEEEEC-CCCCCCCcChhhcCHH-
Confidence 458899999876 55677888888999999999999999999999998543333 7999998 52111 01 122
Q ss_pred HHHHHHHc-CCceEEEcCCCCCCcc
Q 009728 400 LIRAVRRS-GQIVTWVSDPMHGNTI 423 (527)
Q Consensus 400 LI~AV~~a-G~~ViW~cDPMHGNT~ 423 (527)
-|..+++. |.|| +.||=|+|..
T Consensus 183 ai~~lk~~~~~pV--i~d~sH~~g~ 205 (262)
T 1zco_A 183 AVPVVKELSHLPI--IVDPSHPAGR 205 (262)
T ss_dssp HHHHHHHHBSSCE--EECSSTTTCS
T ss_pred HHHHHHhhhCCCE--EEEcCCCCCc
Confidence 23344554 8884 3888899654
No 11
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=72.29 E-value=4.3 Score=40.27 Aligned_cols=93 Identities=18% Similarity=0.182 Sum_probs=68.0
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChh--H-HHhhChH-HH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAE--N-MRVKLPH-LI 401 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~--~-v~~~LP~-LI 401 (527)
.-+++||-|+=+ +-.|++.+++..-||++|=|-+++++|+..-++.+--...+ .++|+-|.+.. . =.+.+-- -|
T Consensus 122 vd~~kIgs~~~~-n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~-~i~L~~Rg~~~yp~y~~~~vdl~~i 199 (276)
T 1vs1_A 122 ADMLQIGARNMQ-NFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNW-QVVLVERGIRTFEPSTRFTLDVAAV 199 (276)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCBHHHH
T ss_pred CCeEEECccccc-CHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCC-eEEEEeCCcCCCCCcCcchhCHHHH
Confidence 468899999887 77899999999999999999999999999999987322222 79999997732 1 1111111 14
Q ss_pred HHHHH-cCCceEEEcCCCCCCc
Q 009728 402 RAVRR-SGQIVTWVSDPMHGNT 422 (527)
Q Consensus 402 ~AV~~-aG~~ViW~cDPMHGNT 422 (527)
..+++ .|.||+ .||=|+|.
T Consensus 200 ~~lk~~~~lpVi--~dssH~~g 219 (276)
T 1vs1_A 200 AVLKEATHLPVI--VDPSHPAG 219 (276)
T ss_dssp HHHHHHBSSCEE--ECCHHHHC
T ss_pred HHHHHHhCCCEE--EeCCCCCC
Confidence 45555 488853 78889864
No 12
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=71.48 E-value=2.8 Score=41.86 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=61.7
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc---ChhHHHhhChHHH
Q 009728 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM---GAENMRVKLPHLI 401 (527)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm---Ga~~v~~~LP~LI 401 (527)
.-++|||-|- |+.+ .++.+++..-||++|=|-.++++|+..-++++.-...+ .+.|+-|= +...-.--|-.+
T Consensus 109 vd~~kIgA~~~~n~~--Ll~~~a~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~-~i~L~~rg~~~~y~~~~~dl~~i- 184 (292)
T 1o60_A 109 VDIIQLPAFLARQTD--LVEAMAKTGAVINVKKPQFLSPSQMGNIVEKIEECGND-KIILCDRGTNFGYDNLIVDMLGF- 184 (292)
T ss_dssp CSEEEECGGGTTCHH--HHHHHHHTTCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTTHH-
T ss_pred CCEEEECcccccCHH--HHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHHHH-
Confidence 3578898833 2222 77778889999999999999999999999987533333 79999884 443211123333
Q ss_pred HHHHHc--CCceEEEcCCCCCCcccCCCC
Q 009728 402 RAVRRS--GQIVTWVSDPMHGNTIKAPCG 428 (527)
Q Consensus 402 ~AV~~a--G~~ViW~cDPMHGNT~~~~~G 428 (527)
..+++. |.+|+ +||=|+|-.-..+|
T Consensus 185 ~~lk~~~~~~pV~--~D~sH~~q~p~~~~ 211 (292)
T 1o60_A 185 SVMKKASKGSPVI--FDVTHSLQCRDPFG 211 (292)
T ss_dssp HHHHHHTTSCCEE--EEHHHHCC------
T ss_pred HHHHhhCCCCCEE--EECCCcccccCccc
Confidence 245555 67776 46669984433333
No 13
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=62.91 E-value=5.2 Score=38.53 Aligned_cols=66 Identities=12% Similarity=0.221 Sum_probs=49.8
Q ss_pred eCCCCCHHHHHHHHHHhCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc
Q 009728 357 VSDKMDPNELVKLIEILNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~--~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (527)
.||.++++++.++++.+.-.+ ......++.=+|.....+.+=.+|+..++.|..+.|+|||.-|.+
T Consensus 53 ~g~~~~~~~~~~~~~~~~~~~~l~~~d~v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~ 120 (289)
T 3pzs_A 53 TGCVMPASHLTDIVQGIADIDRLKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHP 120 (289)
T ss_dssp CEEECCHHHHHHHHHHHHHTTCGGGCCEEEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEET
T ss_pred ccccCCHHHHHHHHHHHHhcCCccCCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccC
Confidence 367788999999998874221 244566777777777778888888888888888899999975543
No 14
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=58.59 E-value=5.8 Score=40.96 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHH-------hCCCCCCCcEEEEeccChhHHHh--hChHHHHHHHHcCCceEEEcCCCCCCc-ccCCCCc
Q 009728 360 KMDPNELVKLIEI-------LNPQNKPGRITIITRMGAENMRV--KLPHLIRAVRRSGQIVTWVSDPMHGNT-IKAPCGL 429 (527)
Q Consensus 360 ~~~p~elv~L~~~-------LnP~~~pGRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~ 429 (527)
.+|+||+..+.+. ++.+..|+.+.-|.=.|-+.-.. .-+..-=-|.++|.+|+ ||||- .++.+|-
T Consensus 72 Get~eEi~g~~~am~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv~Va-----KHGnR~~ss~~Gs 146 (377)
T 3r88_A 72 APTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVV-----KHGNRAASSLSGG 146 (377)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTCCEE-----EEECCCSSSSCCH
T ss_pred CcCHHHHHHHHHHHHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCCeEE-----eECCCCCCCcccH
Confidence 4689999888765 46667788877777776654322 12333334667999995 99994 4444562
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 430 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
.|+.++. |+.++++.+++-+|+
T Consensus 147 ---------------aDvLEaL-----Gv~~~l~~e~~~~~l 168 (377)
T 3r88_A 147 ---------------ADTLEAL-----GVRIDLGPDLVARSL 168 (377)
T ss_dssp ---------------HHHHHHT-----TCCCCCCHHHHHHHH
T ss_pred ---------------HHHHHHc-----CCCcccchHHHHHHH
Confidence 2455544 788999999999986
No 15
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=57.63 E-value=5.2 Score=39.14 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=46.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCC--CCcEEEEeccChhHHHhhChHHHHHHHHcCCc----eEEEcCCCCCCc
Q 009728 358 SDKMDPNELVKLIEILNPQNK--PGRITIITRMGAENMRVKLPHLIRAVRRSGQI----VTWVSDPMHGNT 422 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~--pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~----ViW~cDPMHGNT 422 (527)
|+.++.+++..+++-+.+... .-...+|.=+|...+.+.+=.+|+.+++.+-. +.|+|||.=|-+
T Consensus 53 g~~~~~~ql~~~~~~~~~~~~~~~~daV~tG~l~s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~ 123 (300)
T 3zs7_A 53 GHRMSLQEYDELMEGVRANNFLSNYRYILTGYINNVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDD 123 (300)
T ss_dssp EEECCHHHHHHHHHHHHHTTCGGGCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---
T ss_pred CCcCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccC
Confidence 567788899999988887664 33467778888777777777888888765533 789999966654
No 16
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=56.19 E-value=8.3 Score=38.18 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=61.8
Q ss_pred CCceeecccc-CCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHH---hhChHHH
Q 009728 326 AHFLWVGERT-RQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMR---VKLPHLI 401 (527)
Q Consensus 326 aH~lWIGeRT-RqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~---~~LP~LI 401 (527)
.-+++||-|- |+.+ .++.+++..-||++|=|-.++++|+..-++++--...+ .+.|+-|=+.-.-. -.|- -|
T Consensus 106 ~d~~kIga~~~~n~~--ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~-~i~L~~rg~~~~~~~~~~dl~-~i 181 (280)
T 2qkf_A 106 CDVIQLPAFLARQTD--LVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNG-KLILCERGSSFGYDNLVVDML-GF 181 (280)
T ss_dssp CSEEEECGGGTTBHH--HHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCC-CEEEEECCEECSTTCEECCTT-HH
T ss_pred CCEEEECcccccCHH--HHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCC-eEEEEECCCCCCCCccccCHH-HH
Confidence 3578888833 2222 77777889999999999999999999999987433323 79999886532111 1222 34
Q ss_pred HHHHHc--CCceEEEcCCCCCCcccCCCCccc
Q 009728 402 RAVRRS--GQIVTWVSDPMHGNTIKAPCGLKT 431 (527)
Q Consensus 402 ~AV~~a--G~~ViW~cDPMHGNT~~~~~G~KT 431 (527)
..+++. |.+|+ +||=|+|-.-..+|-++
T Consensus 182 ~~lk~~~~~~pV~--~D~sH~~q~~~~~~~~s 211 (280)
T 2qkf_A 182 GVMKQTCGNLPVI--FDVTHSLQTRDAGSAAS 211 (280)
T ss_dssp HHHHHHTTTCCEE--EEHHHHCC---------
T ss_pred HHHHHhCCCCCEE--EECCCCccccCcccccc
Confidence 456666 67776 46669984433333333
No 17
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=54.69 E-value=15 Score=37.83 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccC-----hhHHHhhChHH
Q 009728 326 AHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMG-----AENMRVKLPHL 400 (527)
Q Consensus 326 aH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmG-----a~~v~~~LP~L 400 (527)
.-+++||-|+=+ +-..+..+++..-||++|=|-++|++|+..-++.+--...+ .++|+-|.+ ...-.-.|- -
T Consensus 190 vd~lkIgAr~~~-n~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~-~viLceRG~~typ~~~~~~vdl~-a 266 (350)
T 1vr6_A 190 ADIIQIGARNAQ-NFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNT-KIILCERGIRTFEKATRNTLDIS-A 266 (350)
T ss_dssp CSEEEECGGGTT-CHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCC-CEEEEECCBCCSCCSSSSBCCTT-H
T ss_pred CCEEEECccccc-CHHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCC-eEEEEeCCCCCCCCcChhhhhHH-H
Confidence 468999999887 56678888899999999999999999999999977322222 688874543 211111222 2
Q ss_pred HHHHHHc-CCceEEEcCCCCCCc
Q 009728 401 IRAVRRS-GQIVTWVSDPMHGNT 422 (527)
Q Consensus 401 I~AV~~a-G~~ViW~cDPMHGNT 422 (527)
|..+++. |.|| +.||=|+|.
T Consensus 267 i~~lk~~~~lpV--i~dssHs~G 287 (350)
T 1vr6_A 267 VPIIRKESHLPI--LVDPSHSGG 287 (350)
T ss_dssp HHHHHHHBSSCE--EECHHHHHC
T ss_pred HHHHHHhhCCCE--EEeCCCCCc
Confidence 3344544 8885 378889854
No 18
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=49.12 E-value=9.6 Score=38.26 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++++..-+|-+-...+|.| .+++-.+|--|+=.|=++.+ |.|. |..| +-.|.|.
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 204 (349)
T 3hgj_A 146 GMERILQAFVEGARRALRAGFQ-------VIELHMAHGYLLSSFLSPLSNQRTDA-----YGGS-----LENRMRF---- 204 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHhcCCcccccCCC-----CCcC-----HHHHHHH----
Confidence 4455566665665555667765 46888888777655555554 3332 4433 3456553
Q ss_pred hHHHhhhcc------CcceeeeCC------CCCHHHHHHHHHHhCCC
Q 009728 342 HVEFLKGVA------NPLGIKVSD------KMDPNELVKLIEILNPQ 376 (527)
Q Consensus 342 HVeflrgI~------NPIGvKvGP------~~~p~elv~L~~~LnP~ 376 (527)
-+|-++.|+ -|||||++| ..+.+|.+++++.|...
T Consensus 205 ~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~ 251 (349)
T 3hgj_A 205 PLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKEL 251 (349)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHc
Confidence 245555553 489999999 45677777777766543
No 19
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=45.67 E-value=19 Score=34.50 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHhCCC-CCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCC
Q 009728 359 DKMDPNELVKLIEILNPQ-NKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 359 P~~~p~elv~L~~~LnP~-~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (527)
+.++++++.++++.+... -...++.++.=+......+.+-.+++..++.|.++.+++||--+
T Consensus 55 ~~l~~~~i~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~ 117 (312)
T 2yxt_A 55 QVLNSDELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLG 117 (312)
T ss_dssp EECCHHHHHHHHHHHHHTTCCCCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTCEEEECCCCE
T ss_pred ccCCHHHHHHHHHHHHhcCCccCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEECCCcC
Confidence 367889988877775432 23456755533333344455557788888889888889999744
No 20
>3rxz_A Polysaccharide deacetylase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, carbohydrate esterase family 4; 2.01A {Mycobacterium smegmatis}
Probab=45.43 E-value=59 Score=31.31 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHH
Q 009728 358 SDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSI 437 (527)
Q Consensus 358 GP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~I 437 (527)
||...-..|++|++.. +.| .|+.. .....+.-|.+|+++.++||-|. .||.+-.. +....-+.+
T Consensus 59 G~~~~~~rll~ll~~~---~v~--aTfFv---~g~~~~~~p~~v~~~~~~GhEIg-----~H~~~H~~---~~~~s~~~~ 122 (300)
T 3rxz_A 59 GPLVGVPRLLGILDEF---NVP--GTFFV---PGYTAHRHPEPIRSIARAGHEIA-----HHGYLHES---LVGADEDTE 122 (300)
T ss_dssp HHHTHHHHHHHHHHHT---TCC--EEEEE---CHHHHHHSHHHHHHHHHTTCEEE-----ECCSSCCC---CTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHc---CCC--EEEEE---EHHHHhhCHHHHHHHHHcCCEEE-----ecCCCCcc---cccCCHHHH
Confidence 4444455566666655 454 55544 12334678999999999999887 48876533 455678999
Q ss_pred HHHHHHHHHHHHh-hCCcCc
Q 009728 438 RAEVRAFFDVHEQ-EGSHPG 456 (527)
Q Consensus 438 l~Ev~~ff~vh~~-~Gs~~G 456 (527)
.+||....+++++ .|..+=
T Consensus 123 ~~ei~~~~~~l~~~~G~~p~ 142 (300)
T 3rxz_A 123 RKILTRGIEALEEVAGVHPV 142 (300)
T ss_dssp HHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCc
Confidence 9999999999988 565443
No 21
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=43.62 E-value=1.1e+02 Score=26.11 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCeeEEecCCccchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCC
Q 009728 125 GKAFLLQGGDCAESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVN 204 (527)
Q Consensus 125 G~AFlLQgGDCAEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN 204 (527)
|...++== .-..+|.|.+++.+.+-++++..++..|....+..-+.+ ++|||=- --+-=.-+|-|.||-.|
T Consensus 40 gH~LViPk-~H~~~l~dL~~~e~~~l~~~~~~v~~~l~~~~~~~~~n~-~~~gq~v-------~HlH~HiiPr~~~d~~~ 110 (138)
T 3p0t_A 40 GHTLVVPR-EEIDNWQDVDSAAFNRVMGVSQLIGKAVCKAFRTERSGL-IIAGLEV-------PHLHVHVFPTRSLSDFG 110 (138)
T ss_dssp TCEEEEES-SCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEE-EECCSSC-------SSCCEEEEEESCGGGSS
T ss_pred cEEEEEEh-HHhCchhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcE-EECCccc-------CEEEEEEeccccCCCCc
Confidence 55555543 236788999999999989999999888865555554554 3677721 12223458889987555
Q ss_pred CCCCCcCCCCCChhHHHHHHHHHHHHH
Q 009728 205 GDAFDEKSRNPDPQRLIRAYCQSAATL 231 (527)
Q Consensus 205 ~~~f~~~aR~PDP~Rll~aY~~SaatL 231 (527)
|.......+|+-|-+.|..=+..|
T Consensus 111 ---~~~~~~~~~~~~l~~~~~~l~~~l 134 (138)
T 3p0t_A 111 ---FANVDRNPSPESLDEAQAKIKAAL 134 (138)
T ss_dssp ---STTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ---ccCCCCCCCHHHHHHHHHHHHHHH
Confidence 333367778888777776655444
No 22
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=42.67 E-value=25 Score=35.60 Aligned_cols=99 Identities=23% Similarity=0.396 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++++..-+|-+....+|.| .+++-..|--|+=.+=.+.+ |.|. |..| +-.|.|.
T Consensus 137 eI~~ii~~f~~AA~~a~~aGfD-------gVEih~ahGYLl~qFlsp~~N~R~D~-----yGGs-----lenR~rf---- 195 (343)
T 3kru_A 137 EIKSIVKAFGEAAKRANLAGYD-------VVEIHAAHGYLIHEFLSPLSNKRKDE-----YGNS-----IENRARF---- 195 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHTHH----
T ss_pred HHHHHHHHHHHHHhhccccCCc-------eEEEecccchhHHHhhcccccccchh-----hccc-----hHhHHHH----
Confidence 3445555555555555667765 45888888766655656654 4444 3322 3356653
Q ss_pred hHHHhhhcc-----C-cceeeeCCC------CCHHHHHHHHHHhCCCCCCCcEEEE
Q 009728 342 HVEFLKGVA-----N-PLGIKVSDK------MDPNELVKLIEILNPQNKPGRITII 385 (527)
Q Consensus 342 HVeflrgI~-----N-PIGvKvGP~------~~p~elv~L~~~LnP~~~pGRLTLI 385 (527)
-+|-++.|+ + ||+||++|. .+.+|.+++++.|... .-=|++.
T Consensus 196 ~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~--vd~i~vs 249 (343)
T 3kru_A 196 LIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK--VDLIDVS 249 (343)
T ss_dssp HHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc--ccEEecc
Confidence 245555554 4 999999994 5789999999999866 4456664
No 23
>4a5z_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; 2.30A {Homo sapiens}
Probab=38.48 E-value=63 Score=30.20 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHHHHhCCC-CCCCcEEEEeccCh----hHHHhhChHHHHHHHHcCCceEEEcCC-CCCCcccCCCCcccc
Q 009728 365 ELVKLIEILNPQ-NKPGRITIITRMGA----ENMRVKLPHLIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKTR 432 (527)
Q Consensus 365 elv~L~~~LnP~-~~pGRLTLI~RmGa----~~v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KTR 432 (527)
-++++||.|=-. ..+-.|.|||..-. ++..+.|-.|=+.....|....|..|. +|---+.+.+|.+..
T Consensus 53 NfvrF~Ellvk~~~~~~~I~L~T~~d~~~~~~~Q~~~L~~ik~sL~~~gI~l~~~fs~tiHDR~I~~dnGW~Ik 126 (163)
T 4a5z_A 53 NFLRFCEMLIKRPCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIK 126 (163)
T ss_dssp HHHHHHHHHHC--CCCCEEEEEECCCCSTTHHHHHHHHHHHHHHHHHTTCEEEEEECTTCCCCEEEETTSEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEEeCCccccCHHHHHHHHHHHHHHHHHCCCEEEEEeCCCccceEEEecCCeEEE
Confidence 378888886322 34557999999843 455788999999999999999999986 999999999998764
No 24
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=38.25 E-value=25 Score=35.76 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.7
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm 388 (527)
-||.||+.|..+.+|+.++++.+.-+. |++|.+.
T Consensus 194 ~PV~vKi~p~~~~~~~a~~~~~aga~~----i~~int~ 227 (345)
T 3oix_A 194 KPLGIKLPPYFDIVHFDQAAAIFNXYP----LTFVNCI 227 (345)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHHTTSC----CSEEEEC
T ss_pred CCeEEEECCCCCHHHHHHHHHHhCCCc----eEEEEee
Confidence 499999999999999999999987543 5565554
No 25
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=38.09 E-value=18 Score=36.30 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++++..-+|-+....+|.| .+++-.+|--|+=.|=.+.+ |.|. |..| +..|.|.
T Consensus 138 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 196 (340)
T 3gr7_A 138 DIEETVQAFQNGARRAKEAGFD-------VIEIHAAHGYLINEFLSPLSNRRQDE-----YGGS-----PENRYRF---- 196 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTCHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHcCCCccCcCCCc-----ccCC-----HHHHHHH----
Confidence 3445566665555555667765 46888888777766655655 3333 4333 3456553
Q ss_pred hHHHhhhcc----CcceeeeCCC
Q 009728 342 HVEFLKGVA----NPLGIKVSDK 360 (527)
Q Consensus 342 HVeflrgI~----NPIGvKvGP~ 360 (527)
-+|-++.|+ -||+||++|.
T Consensus 197 ~~eiv~avr~~v~~pv~vRls~~ 219 (340)
T 3gr7_A 197 LGEVIDAVREVWDGPLFVRISAS 219 (340)
T ss_dssp HHHHHHHHHHHCCSCEEEEEESC
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 345555554 5999999985
No 26
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=36.80 E-value=69 Score=30.90 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=31.2
Q ss_pred HHHhhhcc----CcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEec
Q 009728 343 VEFLKGVA----NPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITR 387 (527)
Q Consensus 343 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~R 387 (527)
.++++.|+ =||.||+.|..+.+++.++++.+.-.... =|+++.|
T Consensus 147 ~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d-~i~v~~~ 194 (311)
T 1jub_A 147 EKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLT-YVNSVNS 194 (311)
T ss_dssp HHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCC-EEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCc-EEEecCC
Confidence 45666554 39999999999999999999988644433 2444433
No 27
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=34.59 E-value=20 Score=37.35 Aligned_cols=93 Identities=17% Similarity=0.294 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCc
Q 009728 263 DRYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDG 340 (527)
Q Consensus 263 ~~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDg 340 (527)
++-+++++...+|-+....+|.| .+++-..|--|+=.+=++.| |.|...| |- +-.|.|.
T Consensus 163 ~eI~~ii~~F~~AA~rA~~AGfD-------gVEIH~ahGYLl~QFlSp~~N~RtD~yGG-----s~----lenR~Rf--- 223 (419)
T 3l5a_A 163 EKINSIIQQYRDATLRAIKAGFD-------GVEISIAQRLLIQTFFSTFSNRRTDHYGA-----DS----LKNRARL--- 223 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS-------EEEEECCTTSHHHHHHCTTTCCCCSTTST-----TC----HHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------EEEECCccchHHHHccCCcccccccCCCC-----ch----hhhhhHH---
Confidence 34556666666666666677875 45888888777766666655 4444333 31 0245543
Q ss_pred hhHHHhhhccC----------cceeeeCC--------CCCHHHHHHHHHHhCC
Q 009728 341 AHVEFLKGVAN----------PLGIKVSD--------KMDPNELVKLIEILNP 375 (527)
Q Consensus 341 AHVeflrgI~N----------PIGvKvGP--------~~~p~elv~L~~~LnP 375 (527)
-+|-++.|+. |||||++| +.+.+|.+++++.|.-
T Consensus 224 -~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~ 275 (419)
T 3l5a_A 224 -CLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMD 275 (419)
T ss_dssp -HHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHh
Confidence 2444444442 89999999 6778888888888765
No 28
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=32.91 E-value=73 Score=31.61 Aligned_cols=92 Identities=15% Similarity=0.326 Sum_probs=68.5
Q ss_pred CCcccCCCCceeeccccCCCCchhHHHhhhccCcceeeeCCCCCHHHHHHHHHHh--CCCCCCCcEEEEeccCh----hH
Q 009728 319 GLYYDCSAHFLWVGERTRQLDGAHVEFLKGVANPLGIKVSDKMDPNELVKLIEIL--NPQNKPGRITIITRMGA----EN 392 (527)
Q Consensus 319 g~~Y~~SaH~lWIGeRTRqlDgAHVeflrgI~NPIGvKvGP~~~p~elv~L~~~L--nP~~~pGRLTLI~RmGa----~~ 392 (527)
|.|.+-++--+|| +.++|...-.|+| |+++|+.| +|.++. +|.|||..-. ++
T Consensus 116 g~yl~~~~~~i~i-------~DPYir~~hQ~~N--------------l~~f~E~~vk~~~~~~-~i~L~T~~d~~~~~~~ 173 (257)
T 2ymb_A 116 REYLNETVTEVWI-------EDPYIRHTHQLYN--------------FLRFCEMLIKRPCKVK-TIHLLTSLDEGIEQVQ 173 (257)
T ss_dssp STTCSTTCCEEEE-------ECSCCCSHHHHHH--------------HHHHHHHHTC--CCCC-EEEEEECCCSSTTHHH
T ss_pred HHHHhcCCeEEEE-------eCceecchHHHHH--------------HHHHHHHHhhccCccc-eEEEEecCCCcccHHH
Confidence 3444456778888 4556555556655 77888886 566655 8999998753 24
Q ss_pred HHhhChHHHHHHHHcCCceEEEcCC-CCCCcccCCCCcccc
Q 009728 393 MRVKLPHLIRAVRRSGQIVTWVSDP-MHGNTIKAPCGLKTR 432 (527)
Q Consensus 393 v~~~LP~LI~AV~~aG~~ViW~cDP-MHGNT~~~~~G~KTR 432 (527)
..+.|-.|-+.....|....|..|+ +|---+.+.+|.+..
T Consensus 174 q~~~l~~ik~sl~~~gi~~~~~~~~tiHDR~I~~dnGW~Ik 214 (257)
T 2ymb_A 174 QSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIK 214 (257)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCCCCEEEETTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCccceeEEecCCcEEE
Confidence 5567889999999999999999977 899999999998764
No 29
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.92 E-value=58 Score=28.25 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=41.1
Q ss_pred eeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCC--ceEEEc
Q 009728 356 KVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (527)
Q Consensus 356 KvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (527)
-+|+..+++++++.+...||+- +-|-+-++ ... ..+|.+|+++++.|. ..+|+.
T Consensus 36 ~lG~~~p~e~~v~~a~~~~~d~----v~lS~~~~-~~~-~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 36 NIGVLSPQELFIKAAIETKADA----ILVSSLYG-QGE-IDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp EEEEEECHHHHHHHHHHHTCSE----EEEEECSS-THH-HHHTTHHHHHHHTTCTTCEEEEE
T ss_pred ECCCCCCHHHHHHHHHhcCCCE----EEEEecCc-CcH-HHHHHHHHHHHhcCCCCCEEEEE
Confidence 3799999999999999999862 33444454 333 568999999999986 556775
No 30
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=31.40 E-value=2.6e+02 Score=24.31 Aligned_cols=84 Identities=8% Similarity=-0.001 Sum_probs=58.4
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCCeecccccCCcCCC-CCCC-cCCC
Q 009728 136 AESFKEFNANNIRDTFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNG-DAFD-EKSR 213 (527)
Q Consensus 136 AEsF~e~~~~~I~~k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G~~LPsYRGD~VN~-~~f~-~~aR 213 (527)
.+++.|.+++...+-+..+..++..|....+..-+.|| .|||-- --+-=.-+|-|.||.... +-+. ...+
T Consensus 44 ~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~-~aGq~V-------~HlH~HviPR~~~D~~~p~~vw~~~~~~ 115 (137)
T 3ohe_A 44 IREIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVA-ALGNMV-------PQLHLHHIVRYQGDPAWPGPVWGKQPPV 115 (137)
T ss_dssp CCSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEE-ECCSSC-------CSCCEEEEEECTTSTTTTSCCTTSSCCC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe-eccCcC-------CEEEEEEeCCCCCCCCCCcccccCCCCC
Confidence 57888999998888888999999988877777789999 888852 123345689999997542 2222 2345
Q ss_pred CCChhHHHHHHHHH
Q 009728 214 NPDPQRLIRAYCQS 227 (527)
Q Consensus 214 ~PDP~Rll~aY~~S 227 (527)
..|++-|-.-+..-
T Consensus 116 ~~~~eel~~~~~~i 129 (137)
T 3ohe_A 116 PYTEEQQASVKAKL 129 (137)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56676554444433
No 31
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=30.73 E-value=20 Score=36.15 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCch
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGA 341 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgA 341 (527)
+-+++++..-+|-+-...+|.| .+++-..|--|+-.|=++.| |.|. |..| +-.|.|.
T Consensus 152 eI~~ii~~f~~aA~~a~~aGfD-------gVEih~a~GyLl~qFlsp~~N~R~D~-----yGGs-----lenR~r~---- 210 (363)
T 3l5l_A 152 DIARVKQDFVDAARRARDAGFE-------WIELHFAHGYLGQSFFSEHSNKRTDA-----YGGS-----FDNRSRF---- 210 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-------EEEEccccchHHHHccCCCcCCCCcc-----cCcC-----HHHHHHH----
Confidence 4455666665665656667765 46888888777766666665 4443 4333 2345552
Q ss_pred hHHHhhhcc------CcceeeeCCC-------CCHHHHHHHHHHhC
Q 009728 342 HVEFLKGVA------NPLGIKVSDK-------MDPNELVKLIEILN 374 (527)
Q Consensus 342 HVeflrgI~------NPIGvKvGP~-------~~p~elv~L~~~Ln 374 (527)
-+|-++.|+ -|||||++|. .+.+|.+++++.|.
T Consensus 211 ~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~ 256 (363)
T 3l5l_A 211 LLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFK 256 (363)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHH
Confidence 344555554 2899999885 34455555555554
No 32
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=29.56 E-value=61 Score=33.34 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHH--HHHHHHhhHHHhCCC
Q 009728 216 DPQRLIRAYCQSA--------ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAGLT 285 (527)
Q Consensus 216 DP~Rll~aY~~Sa--------atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 285 (527)
||-|||+|+..++ .|++.|+.... . ++.+.......++.++.. ....+|..|..+|+-
T Consensus 154 DPlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~-~-----------l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll 221 (404)
T 1miw_A 154 DALRMMRAVRFVSELGFALAPDTEQAIVQNAP-L-----------LAHISVERMTMEMEKLLGGPFAARALPLLAETGLN 221 (404)
T ss_dssp CTHHHHHHHHHHHHHCCEECHHHHHHHHHHGG-G-----------GGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTT
T ss_pred hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-h-----------hccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcch
Confidence 9999999999887 57888875442 1 111222222333444433 235688999999986
Q ss_pred CC
Q 009728 286 VD 287 (527)
Q Consensus 286 ~~ 287 (527)
..
T Consensus 222 ~~ 223 (404)
T 1miw_A 222 AY 223 (404)
T ss_dssp TS
T ss_pred hh
Confidence 54
No 33
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=29.22 E-value=22 Score=36.35 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.2
Q ss_pred CcceeeeCCCCCHHHHHHHHHHhCC
Q 009728 351 NPLGIKVSDKMDPNELVKLIEILNP 375 (527)
Q Consensus 351 NPIGvKvGP~~~p~elv~L~~~LnP 375 (527)
-||.||+.|..+.+++.++++.++-
T Consensus 194 ~PV~vKi~p~~d~~~~~~~a~~~~~ 218 (354)
T 4ef8_A 194 HSFGVKMPPYFDFAHFDAAAEILNE 218 (354)
T ss_dssp SCEEEEECCCCSHHHHHHHHHHHHT
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHh
Confidence 4999999999999999999888763
No 34
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=29.06 E-value=1.2e+02 Score=27.17 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=41.0
Q ss_pred eCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCC--ceEEEc
Q 009728 357 VSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQ--IVTWVS 415 (527)
Q Consensus 357 vGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~--~ViW~c 415 (527)
.|...+++++++.+...+|+- |-|-+.++. .+ ..++.+|+++++.|. ..||+.
T Consensus 52 lG~~~p~e~lv~aa~~~~~di----V~lS~~~~~-~~-~~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 52 TGLRQTPEQVAMAAVQEDVDV----IGVSILNGA-HL-HLMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp CCSBCCHHHHHHHHHHTTCSE----EEEEESSSC-HH-HHHHHHHHHHHHTTCTTSCEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCE----EEEEeechh-hH-HHHHHHHHHHHhcCCCCCEEEEe
Confidence 588899999999999999872 334445553 33 678999999999985 567876
No 35
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=28.73 E-value=30 Score=33.54 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=25.8
Q ss_pred HHHhhhcc----CcceeeeCCCCCHHHHHHHHHHhC
Q 009728 343 VEFLKGVA----NPLGIKVSDKMDPNELVKLIEILN 374 (527)
Q Consensus 343 VeflrgI~----NPIGvKvGP~~~p~elv~L~~~Ln 374 (527)
.++++.|+ -||.||++|..+.+++.++++.+.
T Consensus 149 ~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~ 184 (314)
T 2e6f_A 149 RTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLN 184 (314)
T ss_dssp HHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555553 499999999999999999998875
No 36
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=28.68 E-value=71 Score=32.49 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHH--------HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHH--HHHHHHhhHHHhCC
Q 009728 215 PDPQRLIRAYCQSA--------ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAGL 284 (527)
Q Consensus 215 PDP~Rll~aY~~Sa--------atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~ 284 (527)
-||-|||+++..++ .|++.||.....+.- +.+.......++.++.. ....+|..|..+|+
T Consensus 148 eDPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l----------~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~gl 217 (390)
T 1vfg_A 148 EDPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLL----------KEAPRGRLINEIKLALREDRFLEILELYRKYRV 217 (390)
T ss_dssp HCTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGG----------GTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTC
T ss_pred hCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhh----------hccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 39999999999887 478888765432211 11111222334444443 24567889999987
Q ss_pred CCC
Q 009728 285 TVD 287 (527)
Q Consensus 285 ~~~ 287 (527)
-..
T Consensus 218 L~~ 220 (390)
T 1vfg_A 218 LEE 220 (390)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 37
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=28.54 E-value=1e+02 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.281 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc
Q 009728 362 DPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT 422 (527)
+++++++.+.. ..||-|.|.-=.. ..-.+.||.+|+..++.|+.++-+.+=| |+.
T Consensus 135 ~~~~i~~~~~~----~~~g~IiL~Hd~~-~~t~~al~~ii~~l~~~Gy~~v~l~~~~-~~~ 189 (195)
T 2cc0_A 135 STDAIVQAVSR----LGNGQVILMHDWP-ANTLAAIPRIAQTLAGKGLCSGMISPQT-GRA 189 (195)
T ss_dssp CHHHHHHHHHT----CCTTCEEEEESSC-HHHHHHHHHHHHHHHHTTEEECEECTTT-SSE
T ss_pred CHHHHHHHHhC----cCcCeEEEECCCc-hhHHHHHHHHHHHHHHCCCEEEEeCccc-CCC
Confidence 57777776643 4578888887443 4555789999999999999999876654 443
No 38
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=28.16 E-value=1e+02 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=22.4
Q ss_pred hHHHhhChHHHHHHHHcCCceEEEcC
Q 009728 391 ENMRVKLPHLIRAVRRSGQIVTWVSD 416 (527)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cD 416 (527)
+.+.+.|-.+|+.+++.|.+|+|++=
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~vvl~~~ 111 (185)
T 3hp4_A 86 KKMQTNLTALVKKSQAANAMTALMEI 111 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34577889999999999999999984
No 39
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=27.24 E-value=30 Score=34.95 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHh----CCCCCC-CcEEEEeccChhHHHh--hChHHHHHHHHcCCceEEEcCCCCCCccc-CCCCccc
Q 009728 360 KMDPNELVKLIEIL----NPQNKP-GRITIITRMGAENMRV--KLPHLIRAVRRSGQIVTWVSDPMHGNTIK-APCGLKT 431 (527)
Q Consensus 360 ~~~p~elv~L~~~L----nP~~~p-GRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT~~-~~~G~KT 431 (527)
.+|++|+..+.+.+ .|-..+ +.+.=|.=.|-|.-.. .-+...--+.++|.+| +||||--. +.+|-
T Consensus 46 get~~Eiag~~~am~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~V-----~kHGnr~~ss~~Gs-- 118 (329)
T 2elc_A 46 GERPHEIAAMARAMREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAV-----AKHGNRAASSRAGS-- 118 (329)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCCCSSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEE-----EEEECCCTTTTCSH--
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCeeEEcCCCCCCCCccccHHHHHHHHHhCCCCE-----EEeCCCCCCCcccH--
Confidence 36899998777553 232222 4444355555543322 1233334578899999 69999543 44551
Q ss_pred cchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 432 RPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 432 R~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
-|+.++. |+.++++.+++-+|+
T Consensus 119 -------------aDvLeaL-----G~~~~~~~~~~~~~l 140 (329)
T 2elc_A 119 -------------ADLLEAL-----GVDLEAPPERVGEAI 140 (329)
T ss_dssp -------------HHHHHHT-----TCCTTCCHHHHHHHH
T ss_pred -------------HHHHHhC-----CCCCCCCHHHHHHHH
Confidence 3455554 678889999998886
No 40
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=26.70 E-value=50 Score=28.12 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEE--eccChhHHHhhChHHHHHHHHcCCceEEEcCCC
Q 009728 362 DPNELVKLIEILNPQNKPGRITII--TRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPM 418 (527)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRLTLI--~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPM 418 (527)
-|+|+.+.++.- .+.++.+| .++|+..-.+.+..++++.++.+..++|+|++.
T Consensus 7 l~~~~~~~l~~~----~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~ 61 (170)
T 2o6l_A 7 LPKEMEDFVQSS----GENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGN 61 (170)
T ss_dssp CCHHHHHHHHTT----TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSS
T ss_pred CCHHHHHHHHcC----CCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCc
Confidence 367777765531 12233333 344433345678899999998899999999854
No 41
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=25.68 E-value=1.2e+02 Score=29.93 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeecccccccccccccc--cccCCCCCcccCCCCceeeccccCCCCchh
Q 009728 265 YRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLT--RLDSTSGLYYDCSAHFLWVGERTRQLDGAH 342 (527)
Q Consensus 265 y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHEaLlL~YE~alt--R~d~~~g~~Y~~SaH~lWIGeRTRqlDgAH 342 (527)
-+++.+...+|-+....+|.| .+++-.+|--|+-.+=++.| |.|. |..| +-.|.|. -
T Consensus 139 I~~~i~~~~~aA~~a~~aGfD-------gVeih~~~gyLl~qFlsp~~n~R~d~-----yGGs-----lenr~r~----~ 197 (338)
T 1z41_A 139 VKETVQEFKQAAARAKEAGFD-------VIEIHAAHGYLIHEFLSPLSNHRTDE-----YGGS-----PENRYRF----L 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS-------EEEEEECTTSHHHHHHCTTTCCCCST-----TSSS-----HHHHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHcCCC-------EEEeccccchHHHHccCCCcCCcCcc-----cCcc-----hhhhHHH----H
Confidence 344555555555555556764 45788888777766666665 4443 3322 2345442 2
Q ss_pred HHHhhhc----cCcceeeeCC------CCCHHHHHHHHHHhCCC
Q 009728 343 VEFLKGV----ANPLGIKVSD------KMDPNELVKLIEILNPQ 376 (527)
Q Consensus 343 VeflrgI----~NPIGvKvGP------~~~p~elv~L~~~LnP~ 376 (527)
+|-++.| .-||+||++| +.+.++.+++++.|...
T Consensus 198 ~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~ 241 (338)
T 1z41_A 198 REIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQ 241 (338)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHc
Confidence 5566666 4699999999 46677777777666533
No 42
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=25.57 E-value=24 Score=35.73 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHh-------CCCCCCCcEEEEeccChhHHHh--hChHHHHHHHHcCCceEEEcCCCCCCcccC-CCCc
Q 009728 360 KMDPNELVKLIEIL-------NPQNKPGRITIITRMGAENMRV--KLPHLIRAVRRSGQIVTWVSDPMHGNTIKA-PCGL 429 (527)
Q Consensus 360 ~~~p~elv~L~~~L-------nP~~~pGRLTLI~RmGa~~v~~--~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~-~~G~ 429 (527)
.+|+||+..+.+.+ +....+ .+.=|.=.|-+.-.. .-+.+.--|.++|.+| |||||--.+ .+|-
T Consensus 52 get~eEi~g~~~am~~~~~~v~~~~~~-~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~V-----~khG~r~~ss~~Gs 125 (346)
T 4hkm_A 52 KETIGEIAGAATVMREFSRRVEVTDRR-HMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKV-----AKHGNRSVSSKSGS 125 (346)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCCSCCT-TEEEEECC------CCCHHHHHHHHHHHTTCEE-----EEEC---------C
T ss_pred CcCHHHHHHHHHHHHHhCCCCCCCCCc-cceeecCCCCCCccccCcHHHHHHHHHhcCCCe-----eecCCCCCCCCcCH
Confidence 47899999887764 322222 344444444443221 1344444567889999 599995433 3452
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 430 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
.|+.++. |+.++++.+++-+|+
T Consensus 126 ---------------aD~LeaL-----G~~~~ls~~~~~~~l 147 (346)
T 4hkm_A 126 ---------------ADALEAL-----GAVIELQPEQVAASL 147 (346)
T ss_dssp ---------------HHHHHTT-----TCCCCCCHHHHHHHH
T ss_pred ---------------HHHHHHc-----CCCcccCHHHHHHHH
Confidence 2344443 788899999988886
No 43
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=24.97 E-value=45 Score=38.17 Aligned_cols=88 Identities=24% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEc-CCCCCCcc------cCCCCccc
Q 009728 359 DKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVS-DPMHGNTI------KAPCGLKT 431 (527)
Q Consensus 359 P~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~c-DPMHGNT~------~~~~G~KT 431 (527)
|..+|+|-.+.++.|+ .+|.+-|.++.+-.|-.|++..++.|..+--.. .-+-=||| ..|+-+
T Consensus 6 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~p~d~-- 75 (886)
T 2qtc_A 6 NDVDPIETRDWLQAIE--------SVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNYINTIPVEEQPEYPGNL-- 75 (886)
T ss_dssp ----------------------------------------------------------CCCSSCSSCGGGCCCCCSCH--
T ss_pred CCCChHHHHHHHHHHH--------HHHHHhCHHHHHHHHHHHHHHHHHcCCCCCCCccCCchhhhCCCccccCCCchH--
Confidence 6678899999999988 588999999999999999999999998776554 33457999 555444
Q ss_pred cchh-HHHHHHHHHH--HHHHhh------CCcCcc
Q 009728 432 RPFD-SIRAEVRAFF--DVHEQE------GSHPGG 457 (527)
Q Consensus 432 R~f~-~Il~Ev~~ff--~vh~~~------Gs~~GG 457 (527)
.++ .+.+|||.+. -|+++. |.|+|+
T Consensus 76 -~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs 109 (886)
T 2qtc_A 76 -ELERRIRSAIRWNAIMTVLRASKKDLELGGHMAS 109 (886)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCC
Confidence 456 6788888875 566666 899986
No 44
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=24.90 E-value=21 Score=36.69 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHhC----CC--------CCC---CcEEEEeccChhHHHhhC----hHHHHHHHHcCCceEEEcCCCCC
Q 009728 360 KMDPNELVKLIEILN----PQ--------NKP---GRITIITRMGAENMRVKL----PHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 360 ~~~p~elv~L~~~Ln----P~--------~~p---GRLTLI~RmGa~~v~~~L----P~LI~AV~~aG~~ViW~cDPMHG 420 (527)
++|++|+..+.+.+- +- ..+ +.+.=| .|.+.....- +...--+.++|.+| +|||
T Consensus 73 Get~eEiag~~~am~~~~~~~~~~~~~~~~~~~~~~~~vD~--~gTGGdg~~tfNiSt~~A~v~Aa~Gv~V-----aKHG 145 (374)
T 1vqu_A 73 GVSADELTGMAEVLQSQSKMGTGENYSQLPITNSPFSIIDT--CGTGGDGSSTFNISTAVAFVAAAYGVPV-----AKHG 145 (374)
T ss_dssp CCCHHHHHHHHHHHHTTCCC-----------CCSSSCCEEE--EECC---CCBCCHHHHHHHHHHHTTCCE-----EEEE
T ss_pred CCCHHHHHHHHHHHHHhCCccccccccccCccccCCCeeEE--eCCCCCCCCccchHHHHHHHHHhCCCCE-----EEEC
Confidence 358999988876542 11 222 232223 4444444433 34444577889999 6999
Q ss_pred Ccc-cCCCCccccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 421 NTI-KAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 421 NT~-~~~~G~KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
|-- ++.+| ..|+.++. |+.++++.+++-+|+
T Consensus 146 nR~~ss~~G---------------saDvLEaL-----Gv~~~~~~e~~~~~l 177 (374)
T 1vqu_A 146 NRSASSLTG---------------SADVLEAL-----GVNLGASPEKVQAAL 177 (374)
T ss_dssp ECC--CTTC---------------HHHHHHHT-----TCCTTCCHHHHHHHH
T ss_pred CCCCCCCCC---------------HHHHHHhC-----CCCCCCCHHHHHHHH
Confidence 944 34566 23555554 678899999999886
No 45
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=24.57 E-value=30 Score=29.45 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhccCCCccCHHHH
Q 009728 90 KEELESVLKTLDDFPPIVFAGEA 112 (527)
Q Consensus 90 ~~~l~~v~~~L~~lPPLV~a~Ei 112 (527)
-.+|.+|.+-|+.|||++...|.
T Consensus 61 LsQLKRvQRdlrGLPP~~~e~~~ 83 (87)
T 2rf4_B 61 ISQLKRIQRDFKGLPPAQDFSAA 83 (87)
T ss_dssp HHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHhhcCCCcchhcccC
Confidence 45689999999999999987663
No 46
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=24.15 E-value=64 Score=29.34 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhHHHhCCCCCCCCCCccceeeccc-------cccccccccc
Q 009728 264 RYRELAHRVDEALGFMSAAGLTVDHPIMTTTEFWTSHE-------CLLLPYEQSL 311 (527)
Q Consensus 264 ~y~~~~~~i~~al~Fm~a~G~~~~~~~~~~~~~~tSHE-------aLlL~YE~al 311 (527)
.-..++.+|-++|.||+..|+-.. .+....|+.+.+ .-+.||..+-
T Consensus 107 ~~~~i~~qi~~~l~~lH~~~ivH~--Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~ 159 (298)
T 1csn_A 107 TVAMAAKQMLARVQSIHEKSLVYR--DIKPDNFLIGRPNSKNANMIYVVDFGMVK 159 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTTEECC--CCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCEecC--CCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence 456789999999999999987654 556667777654 5577887663
No 47
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=23.68 E-value=65 Score=27.60 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=24.5
Q ss_pred hhHHHhhChHHHHHHHHcCCceEEEcCCCCC
Q 009728 390 AENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 390 a~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (527)
.+.+.+.|-.+|+.+++.|.+|+|++=|.-+
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~vil~~~~p~~ 126 (204)
T 3p94_A 96 LENVFGNLVSMAELAKANHIKVIFCSVLPAY 126 (204)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3456777888999999999999999865433
No 48
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=23.10 E-value=5e+02 Score=24.81 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=41.4
Q ss_pred ceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHH-HcCCceEEEcCCCCCCc
Q 009728 353 LGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVR-RSGQIVTWVSDPMHGNT 422 (527)
Q Consensus 353 IGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~-~aG~~ViW~cDPMHGNT 422 (527)
+|+..|-..+|.+|.+|++.+.-++.+ ..|.-..-. |.+++.|. ..|.+|+ ..|||.+.+
T Consensus 199 ~~~~~~~eps~~~l~~l~~~ik~~~v~--~if~e~~~~-------~~~~~~ia~~~g~~v~-~ld~l~~~~ 259 (284)
T 2prs_A 199 FTVNPEIQPGAQRLHEIRTQLVEQKAT--CVFAEPQFR-------PAVVESVARGTSVRMG-TLDPLGTNI 259 (284)
T ss_dssp EESSTTSCCCHHHHHHHHHHHHHTTCC--EEEECTTSC-------SHHHHHHTTTSCCEEE-ECCTTCTTS
T ss_pred eccCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCC-------hHHHHHHHHHcCCeEE-EeccCcccC
Confidence 467778888999999999998766554 444444333 34444544 6798987 469997754
No 49
>3s6o_A Polysaccharide deacetylase family protein; ssgcid, NIH, structural genomics, seattle structural genomic for infectious disease; 1.85A {Burkholderia pseudomallei} SCOP: c.6.2.6
Probab=23.05 E-value=2e+02 Score=28.38 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=55.8
Q ss_pred HHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHHHHHH
Q 009728 367 VKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFD 446 (527)
Q Consensus 367 v~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~~ff~ 446 (527)
-+|+++|+-.+.|.=+-++. ...+.-|.+|+++.++||-|- .||.+-. .+..-.-+.+.+||....+
T Consensus 89 ~rll~lL~~~~v~aTfFv~g-----~~~~~~p~~v~~i~~~GhEIg-----~H~~~H~---~~~~ls~~~~~~ei~~~~~ 155 (321)
T 3s6o_A 89 WRILREFDKRGLPLTVFGVG-----MAIERHPELARAFVELGHEIA-----CHGWRWI---HYQDMTPEREAEHMRLGME 155 (321)
T ss_dssp HHHHHHHHHHTCCCEEEECH-----HHHHHCHHHHHHHHHTTCEEE-----ECCSSCS---CCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEH-----HHhhhCHHHHHHHHHcCCEEe-----eCCcccc---ccccCCHHHHHHHHHHHHH
Confidence 34444444445654444432 334678999999999999987 5887653 3445678899999999999
Q ss_pred HHHhh-CCcCccce
Q 009728 447 VHEQE-GSHPGGVH 459 (527)
Q Consensus 447 vh~~~-Gs~~GGlH 459 (527)
++++. |..+=|.-
T Consensus 156 ~l~~~~G~~p~g~r 169 (321)
T 3s6o_A 156 AIERVTGVRPLGWY 169 (321)
T ss_dssp HHHHHHSCCCCEEC
T ss_pred HHHHHhCCCcccEE
Confidence 99875 76666554
No 50
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=22.69 E-value=3.8e+02 Score=26.74 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCCcEEEEe-------c---cChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCc---cccchhHHHHHH
Q 009728 378 KPGRITIIT-------R---MGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGL---KTRPFDSIRAEV 441 (527)
Q Consensus 378 ~pGRLTLI~-------R---mGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~---KTR~f~~Il~Ev 441 (527)
.||.+.+|. + .-.+.+.+.|-.+|+.+++.|.+|+++. |+..+......|. ....+.++++|+
T Consensus 229 ~p~d~VvI~~G~ND~~~~~~~~~~~~~~~l~~ii~~lr~~~a~vilvt-P~~~~~~~~~~~~~~~~~~~~~~~i~~l 304 (375)
T 2o14_A 229 KPGDYFMLQLGINDTNPKHKESEAEFKEVMRDMIRQVKAKGADVILST-PQGRATDFTSEGIHSSVNRWYRASILAL 304 (375)
T ss_dssp CTTCEEEEECCTGGGCGGGCCCHHHHHHHHHHHHHHHHTTTCEEEEEC-CCCCTTCBCTTSCBCCTTSTTHHHHHHH
T ss_pred CCCCEEEEEEEccCCCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCcccccCcccchhHHHHHHHHHHHHH
Confidence 467777773 1 1346677889999999999999988876 8876541122342 234455566555
No 51
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=22.46 E-value=1.9e+02 Score=28.31 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCcccCCCCccccchhHHHHHHH
Q 009728 363 PNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVR 442 (527)
Q Consensus 363 p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT~~~~~G~KTR~f~~Il~Ev~ 442 (527)
-..|+++++.. +.| .|+.. .....+.-|.+|+++.++||-|. .||.+-. .+....-+.+.+||.
T Consensus 76 ~~rlL~lL~~~---~v~--aTfFv---~g~~~~~~p~~v~~i~~~GhEIg-----~H~~~H~---~~~~~s~~~~~~ei~ 139 (326)
T 3qbu_A 76 IPRLLKLFKKY---HLP--ATWFV---PGHSIETFPEQMKMIVDAGHEVG-----AHGYSHE---NPIAMSTKQEEDVLL 139 (326)
T ss_dssp HHHHHHHHHHT---TCC--CEEEC---CHHHHHHCHHHHHHHHTTTCEEE-----BCCSSCC---CGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHc---CCC--EEEEE---EhHHhhhCHHHHHHHHHcCCEEE-----eCCCCCc---ChhhCCHHHHHHHHH
Confidence 34555555554 455 45543 12333568999999999999776 6886643 355667899999999
Q ss_pred HHHHHHHh-hCCcC
Q 009728 443 AFFDVHEQ-EGSHP 455 (527)
Q Consensus 443 ~ff~vh~~-~Gs~~ 455 (527)
...+++++ .|..+
T Consensus 140 ~~~~~l~~~~G~~p 153 (326)
T 3qbu_A 140 KSVELIKDLTGKAP 153 (326)
T ss_dssp HHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHCCCC
Confidence 99999987 45544
No 52
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=22.35 E-value=23 Score=37.36 Aligned_cols=87 Identities=22% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHH-------hCCCC--CCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc-ccCCCCc
Q 009728 360 KMDPNELVKLIEI-------LNPQN--KPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT-IKAPCGL 429 (527)
Q Consensus 360 ~~~p~elv~L~~~-------LnP~~--~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~ 429 (527)
.+|++|+..+.+. ++... .+|.+.=|.=.|-+.- ..-+.+.--|.+.|.+| |||||- .++.+|-
T Consensus 50 Get~eEiag~~~Am~~~~~~~~~~~~~~~~~~vD~~gTGGdG~-~iSt~~A~vvAa~Gv~V-----aKHGnR~~ss~~Gs 123 (440)
T 2tpt_A 50 DMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGD-VTSLMLGPMVAACGGYI-----PMISGRGLGHTGGT 123 (440)
T ss_dssp CCCHHHHHHHHHHHHHTSBCCCCTTTTCSSCBEEEEECCCSSC-CHHHHHHHHHHHTTCBE-----EEEECCCCTTSCCH
T ss_pred CCCHHHHHHHHHHHHHhCCcCCCcccccCCCeeeeCCCCCCCc-cHHHHHHHHHHhCCCcE-----EEECCCCCCCcccH
Confidence 4789999987765 33322 2232322332232211 12344444577889999 799994 4455661
Q ss_pred cccchhHHHHHHHHHHHHHHhhCCcCccceeeecCCCccccc
Q 009728 430 KTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECI 471 (527)
Q Consensus 430 KTR~f~~Il~Ev~~ff~vh~~~Gs~~GGlHLE~Tg~~VTECv 471 (527)
.| +.++. -|+.++++.+++.+|+
T Consensus 124 -----aD----------vLEaL----~Gv~~~ls~e~~~~~l 146 (440)
T 2tpt_A 124 -----LD----------KLESI----PGFDIFPDDNRFREII 146 (440)
T ss_dssp -----HH----------HHTTS----TTCCSCCCHHHHHHHH
T ss_pred -----HH----------HHHhC----cCCCCCCCHHHHHHHH
Confidence 23 33332 3678889999888885
No 53
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=21.44 E-value=51 Score=32.30 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=20.0
Q ss_pred cCcceeeeCCCCCHHHHHHHHHHhC
Q 009728 350 ANPLGIKVSDKMDPNELVKLIEILN 374 (527)
Q Consensus 350 ~NPIGvKvGP~~~p~elv~L~~~Ln 374 (527)
.=||.||+.|..+.+|++++++.+.
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~ 235 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLV 235 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHH
T ss_pred cCceEEEecCCCCHHHHHHHHHHHH
Confidence 3599999999988888777776664
No 54
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=21.13 E-value=1.3e+02 Score=31.03 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=34.3
Q ss_pred ceeee----CCCCCHHHHHHHHHHhCCC------CCCCcEEEEeccChhHHHhhChHHHHHHHH--cCCceEEEcCCCCC
Q 009728 353 LGIKV----SDKMDPNELVKLIEILNPQ------NKPGRITIITRMGAENMRVKLPHLIRAVRR--SGQIVTWVSDPMHG 420 (527)
Q Consensus 353 IGvKv----GP~~~p~elv~L~~~LnP~------~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~--aG~~ViW~cDPMHG 420 (527)
-|+|+ |-..++++..++-+.++.+ ...|+++-+.- -+..++=.|.+.+.. .... -.+.|||||
T Consensus 108 NGiK~~~~~G~~l~~~~~~~Ie~~~~~~~~~~~~~~~g~~~~~~d----~~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG 182 (443)
T 3i3w_A 108 NGIKLFSSNGFKLDDALEEEVEDMIDGDFIYQPQFKFGSYKILAN----AIDEYIESIYSRFAKFVNYKG-KVVVDCAHG 182 (443)
T ss_dssp EEEEEEETTSCBCCHHHHHHHHHHHTSCCCCCTTSCCCCEEECTT----TTHHHHHHHHHHHTTTCCCCS-EEEEECTTS
T ss_pred CeEEEEcCCCCcCCHHHHHHHHHHHhccccccccccCccEEEChh----HHHHHHHHHHHhCchhhccCC-eEEEECCCC
Confidence 48887 5566676666666666421 24577665432 222333333333322 1123 456799999
Q ss_pred Cc
Q 009728 421 NT 422 (527)
Q Consensus 421 NT 422 (527)
-+
T Consensus 183 ~~ 184 (443)
T 3i3w_A 183 AA 184 (443)
T ss_dssp TT
T ss_pred hH
Confidence 65
No 55
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=20.86 E-value=96 Score=32.16 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=35.3
Q ss_pred ChhHHHHHHHHHH--------HHHHHHHHhhcCCccccccccccchhhhcCChhhhHHHHHHH--HHHHHHhhHHHhCCC
Q 009728 216 DPQRLIRAYCQSA--------ATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAH--RVDEALGFMSAAGLT 285 (527)
Q Consensus 216 DP~Rll~aY~~Sa--------atLn~lRa~~~gg~adl~~~~~w~~~f~~~s~~~~~y~~~~~--~i~~al~Fm~a~G~~ 285 (527)
||-|||+++..++ .|+..|+.... .++.+......+++.+|.. ....+|+.|..+|+-
T Consensus 178 DPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~------------~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL 245 (415)
T 3aql_A 178 DPVRMLRAVRFAAKLGMRISPETAEPIPRLAT------------LLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLF 245 (415)
T ss_dssp CTHHHHHHHHHHHHTTCEECHHHHTHHHHHGG------------GGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH------------hhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCCh
Confidence 8999999999886 57777775431 1111111122223333322 235689999999986
Q ss_pred CC
Q 009728 286 VD 287 (527)
Q Consensus 286 ~~ 287 (527)
..
T Consensus 246 ~~ 247 (415)
T 3aql_A 246 QP 247 (415)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 56
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.65 E-value=1.5e+02 Score=25.91 Aligned_cols=30 Identities=0% Similarity=-0.003 Sum_probs=24.7
Q ss_pred hHHHhhChHHHHHHHHcCCceEEEcCCCCC
Q 009728 391 ENMRVKLPHLIRAVRRSGQIVTWVSDPMHG 420 (527)
Q Consensus 391 ~~v~~~LP~LI~AV~~aG~~ViW~cDPMHG 420 (527)
+.+.+.|-.+|+.+++.|.+|+|+.=|.-+
T Consensus 96 ~~~~~~l~~~i~~~~~~~~~vil~~~~p~~ 125 (240)
T 3mil_A 96 PEFIDNIRQMVSLMKSYHIRPIIIGPGLVD 125 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 457888999999999999999998855433
No 57
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=20.61 E-value=51 Score=33.63 Aligned_cols=38 Identities=3% Similarity=0.146 Sum_probs=27.6
Q ss_pred cCcceeeeCCCCCHHHHHHHHHHhCCCCCCCcEEEEecc
Q 009728 350 ANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRM 388 (527)
Q Consensus 350 ~NPIGvKvGP~~~p~elv~L~~~LnP~~~pGRLTLI~Rm 388 (527)
.=||.||+.|..+.+++.++++.+.-...- =|+++.|.
T Consensus 220 ~~Pv~vKi~p~~~~~~~~~ia~~~~~aGad-gi~v~ntt 257 (367)
T 3zwt_A 220 RPAVLVKIAPDLTSQDKEDIASVVKELGID-GLIVTNTT 257 (367)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCC-EEEECCCB
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 459999999999998988888877533333 25666554
No 58
>4e9i_A Glucose-6-phosphate 1-dehydrogenase; pentose phosphate pathway, alpha beta, NAD(P) rossmann-like domain, oxidoreductase; 2.85A {Trypanosoma cruzi} PDB: 4em5_A*
Probab=20.47 E-value=46 Score=36.32 Aligned_cols=59 Identities=31% Similarity=0.451 Sum_probs=43.9
Q ss_pred HHHHHHHHHhCCCeeEEecCCccchhhhcchhhHHH-HHHHHHHHHHHHhhcCCCceEEecccccccCCCCCCcccccCC
Q 009728 114 SLEERLAEAAMGKAFLLQGGDCAESFKEFNANNIRD-TFRILLQMGVVLMFGGQMPVVKVGRMAGQFAKPRSDPFEEKNG 192 (527)
Q Consensus 114 ~Lr~~La~vA~G~AFlLQgGDCAEsF~e~~~~~I~~-k~~~LlqMa~vL~~g~~~PVVkVGRiAGQfAKPRS~~~E~~~G 192 (527)
.|-+-|+-||+ |....++++.||+ |+|+|..|--+ . .--||+ |||.+ + .+|
T Consensus 295 HLlQlL~LvAM------------EpP~s~~a~~iRdEKvKVLralrpi-~---~~~vVr-----GQY~~--g-----~~g 346 (541)
T 4e9i_A 295 HLTQILSLLTM------------EKPRSLSAEDIRDEKVQVLRQVVPA-N---PAECVL-----GQYTA--S-----ADG 346 (541)
T ss_dssp HHHHHHHHHHC------------CCCSSSSHHHHHHHHHHHHTTBCCC-C---TTSEEE-----EEEEC--C-----SSS
T ss_pred HHHHHHHHHhc------------CCCCCCCHHHHHHHHHHHHHccCCC-C---ccceEE-----ccccC--C-----CCC
Confidence 68888999998 7888899999995 89999866331 1 112444 99986 2 267
Q ss_pred eecccccCC
Q 009728 193 VKLPSYRGD 201 (527)
Q Consensus 193 ~~LPsYRGD 201 (527)
.+|.||-+
T Consensus 347 -~v~gY~~e 354 (541)
T 4e9i_A 347 -STPGYLDD 354 (541)
T ss_dssp -SSCCGGGC
T ss_pred -CCCCccCC
Confidence 89999976
No 59
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=20.14 E-value=4e+02 Score=22.53 Aligned_cols=67 Identities=9% Similarity=0.114 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHhCCCCCCCcEEEEeccChhHHHhhChHHHHHHHHcCCceEEEcCCCCCCc-ccCCCCccccchhHHHHH
Q 009728 362 DPNELVKLIEILNPQNKPGRITIITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNT-IKAPCGLKTRPFDSIRAE 440 (527)
Q Consensus 362 ~p~elv~L~~~LnP~~~pGRLTLI~RmGa~~v~~~LP~LI~AV~~aG~~ViW~cDPMHGNT-~~~~~G~KTR~f~~Il~E 440 (527)
.|+-+..+++.++ |.+...| | |... =|++.+++|..++|+..+-+... .....-+.+..+.++++-
T Consensus 130 ~~~~~~~~~~~~~----~~~~~~v---G-D~~~-----Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~ 196 (201)
T 2w43_A 130 SPKVYKYFLDSIG----AKEAFLV---S-SNAF-----DVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEW 196 (201)
T ss_dssp CHHHHHHHHHHHT----CSCCEEE---E-SCHH-----HHHHHHHTTCEEEEECSSSCCCCTTSCCCSEEESSHHHHHHH
T ss_pred CHHHHHHHHHhcC----CCcEEEE---e-CCHH-----HhHHHHHCCCEEEEECCCCCCccccCCCCCEEECCHHHHHHH
Confidence 5888999999998 6777776 3 2222 46788999999999987533211 111122445666666544
Q ss_pred H
Q 009728 441 V 441 (527)
Q Consensus 441 v 441 (527)
|
T Consensus 197 l 197 (201)
T 2w43_A 197 I 197 (201)
T ss_dssp H
T ss_pred H
Confidence 4
Done!