BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009729
(527 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297738026|emb|CBI27227.3| unnamed protein product [Vitis vinifera]
Length = 773
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 312/585 (53%), Positives = 378/585 (64%), Gaps = 65/585 (11%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL SLPIKKMKQLGGK
Sbjct: 196 MQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGEEV++RLL KSHGS
Sbjct: 256 LGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSKSHGS 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTLHA A+KS+DSDS
Sbjct: 316 GKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSNDSDSH 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SGW ITALSVSASKI
Sbjct: 376 KKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVSASKI 435
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSPSGSESYSTLNSTELQNELPG 299
V + +GTCSIMKYF+G D S+ +Q D +AA LS SGSESY LN E Q + PG
Sbjct: 436 VAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSGSESYLGLNPRETQKQFPG 495
Query: 300 EQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMR 357
E+ I + M +L Q E K W G K+ + T S S +Q +P D+++
Sbjct: 496 EETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQ--DTKVS 553
Query: 358 S------------------VPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDT 399
S +P + E + +A +D A+ + +K D+ CS +
Sbjct: 554 SSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMDELP 613
Query: 400 EHAETLLPLGDCLSESNKKQVNIPKE----------RLDNSTG-----------DC---- 434
+ + S + QV +PKE R D+S DC
Sbjct: 614 PEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCSVMD 670
Query: 435 -----LSESNQ-------NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEI 482
+ E Q NQV +PKE + AA T + RC +R E+W +I+EI
Sbjct: 671 ELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGGAERRETWSYKIDEI 728
Query: 483 DPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 527
DPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 729 DPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 773
>gi|359472774|ref|XP_002275643.2| PREDICTED: DNA polymerase eta [Vitis vinifera]
Length = 779
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/591 (52%), Positives = 378/591 (63%), Gaps = 71/591 (12%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQV +ETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S V+GLL SLPIKKMKQLGGK
Sbjct: 196 MQVFRETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPLSCVRGLLGSLPIKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL+FSE+KLQE YG NTGTWLWNIARGISGEEV++RLL KSHGS
Sbjct: 256 LGSSLQSDLGVNTVGDLLQFSEEKLQECYGINTGTWLWNIARGISGEEVESRLLSKSHGS 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALKT+ASV++WLN+LCEEL ERL SDLEQNKRIAHTLTLHA A+KS+DSDS
Sbjct: 316 GKTFPGPKALKTIASVENWLNELCEELDERLRSDLEQNKRIAHTLTLHARAYKSNDSDSH 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYG AKIQED NLFQAGLRE+LGS VKT+ + SGW ITALSVSASKI
Sbjct: 376 KKFPSKSCPLRYGIAKIQEDALNLFQAGLREYLGSCKVKTRANQCSGWSITALSVSASKI 435
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFI-DAAPLSP------SGSESYSTLNSTEL 293
V + +GTCSIMKYF+G D S+ +Q D +AA LS SGSESY LN E
Sbjct: 436 VAIPTGTCSIMKYFHGQDLSSSSLKQPQDRSTEEAASLSHSDWGVYSGSESYLGLNPRET 495
Query: 294 QNELPGEQVWIEHSMADLGQLEMKANTW--NGLDPSCSISKQTSGTESSSSLDQNKPQNR 351
Q + PGE+ I + M +L Q E K W G K+ + T S S +Q +P
Sbjct: 496 QKQFPGEETRINYDMPNLDQQEKKRKMWEDQGTPSILRFFKRHNPTSSLSEQEQVEPIQ- 554
Query: 352 DDSRMRS------------------VPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCS 393
D+++ S +P + E + +A +D A+ + +K D+ CS
Sbjct: 555 -DTKVSSSSGLWTTSESCSETGQIQLPKEMMVAETESNARRDSSAAKRNDGYKIDDIDCS 613
Query: 394 SGNHDTEHAETLLPLGDCLSESNKKQVNIPKE----------RLDNSTG----------- 432
+ + + S + QV +PKE R D+S
Sbjct: 614 VMDELPPEIQEEV---QARSSEDLNQVQLPKEMMVAETESNARRDSSAAKRNDGYKIDDI 670
Query: 433 DC---------LSESNQ-------NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWK 476
DC + E Q NQV +PKE + AA T + RC +R E+W
Sbjct: 671 DCSVMDELSPEIQEEVQAWSSEELNQVQLPKETM--AAETGPNDRRCSLGGGAERRETWS 728
Query: 477 LRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKNR 527
+I+EIDPSV+DELP EI+ E+QAWLRP K K+G +IA YFSP KN+
Sbjct: 729 YKIDEIDPSVMDELPPEIRAEVQAWLRPQKPAKTGKRGSSIAHYFSPMKNK 779
>gi|356528144|ref|XP_003532665.1| PREDICTED: DNA polymerase eta-like [Glycine max]
Length = 703
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 295/543 (54%), Positives = 350/543 (64%), Gaps = 52/543 (9%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
M+VLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL SLPIKKMK LGGK
Sbjct: 197 MKVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPQSSVEGLLASLPIKKMKHLGGK 256
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGEEV+ RLLPKSHGS
Sbjct: 257 LGSSLQSDLGVNTVGDLLQFSEEKLQQWYGINTGTWLWNIARGISGEEVEGRLLPKSHGS 316
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALKTV SVQHWLNQLCEEL+ERL SDL+QNKRIA TLTLHA A+K+ DSDS
Sbjct: 317 GKTFPGPQALKTVDSVQHWLNQLCEELNERLHSDLDQNKRIAQTLTLHARAYKTGDSDSH 376
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
+KFPSKSCPLRYGT KIQED LFQAGLR+FLG + K G+ + W +T+LSVSASK+
Sbjct: 377 RKFPSKSCPLRYGTRKIQEDALILFQAGLRDFLGFYNCKAHGNENNNWGVTSLSVSASKL 436
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYSTLNSTELQNELPG 299
V + SGT SI+KYF G STS Q D ID AAP SPSGS + S L E + E P
Sbjct: 437 VSIPSGTHSIVKYFGGSFPSSSTSNQSLDVVIDEAAPSSPSGSGNCSGLVPNEFELEYP- 495
Query: 300 EQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLD----------QNKPQ 349
E ++ S A L Q DP C +S + G SSL N+P
Sbjct: 496 EDTGMKDSKACLDQ----------QDPLCHLSCKADGLTEESSLVSPSGSEDRILHNEPH 545
Query: 350 N----RDDSRMRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETL 405
D R+ ++ + K + K +G SI++FF + S SS
Sbjct: 546 RDLPATDLRRVSNISSLKAVGKKKTAGKKLQGNCSIVHFFNNYHNSQSS----------- 594
Query: 406 LPLGDCLSESNKK-QVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCG 464
L + N K ++ DNS C+ QV +P E E T+ S RC
Sbjct: 595 ------LEQKNVKISSSLGSHSADNSHSTCI------QVEMPAEHPHEEFDTNKS--RCS 640
Query: 465 SDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPS 524
+ Q + W I EIDPS+I+ELP EIQ E Q WLRP KRP+ K+G +I YFSP
Sbjct: 641 VGNMPQGRQDWSYNINEIDPSIINELPPEIQQEFQIWLRPHKRPNVAKRGSSITHYFSPD 700
Query: 525 KNR 527
K+R
Sbjct: 701 KSR 703
>gi|297791325|ref|XP_002863547.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
gi|297309382|gb|EFH39806.1| hypothetical protein ARALYDRAFT_494508 [Arabidopsis lyrata subsp.
lyrata]
Length = 672
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 270/527 (51%), Positives = 334/527 (63%), Gaps = 60/527 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+S+V+ LL SLPIKKMKQLGGKL
Sbjct: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYSAVQELLSSLPIKKMKQLGGKL 257
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LG+ TVGDLL++SE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 258 GTSLQTDLGIDTVGDLLQYSETKLQEHYGINTGTWLWNIARGISGEEVQGRLLPKSHGSG 317
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAFKS DS+S K
Sbjct: 318 KTFPGPRALKSLSTVQHWLNQLSEELSERLSSDLEQNKRIASTLTLHASAFKSRDSNSHK 377
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
KFPSKSCPLRYG KIQED FNLFQA RE++G FG K +G+ WRIT LS+SASKIV
Sbjct: 378 KFPSKSCPLRYGVTKIQEDAFNLFQAAFREYMGPFGSKPRGNKQETWRITGLSISASKIV 437
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQ 301
+ SGT SIM+YF S S + D ++PS SE S STE Q +P E+
Sbjct: 438 DIPSGTSSIMRYFQSESTVPSRS--VDGCVQDHVTITPSASEGCSEQRSTETQAAMPEEE 495
Query: 302 VWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVPI 361
+ +++ + N G+DP + + ++ + N+ R
Sbjct: 496 TGVTYTLHNF------ENPDKGIDPVSEKDVVSCPSNEATDVSTQSESNKGTQTKRIGRK 549
Query: 362 KSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQVN 421
+N +E K+ G SI++ FK+ + + S E + +S ++KK
Sbjct: 550 MNNSKE------KNWGMPSIVDIFKNYNATPPSKQETQEDS--------TVSSTSKKA-- 593
Query: 422 IPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEE 481
+ NS S+ +QVN E ++R + W + +E
Sbjct: 594 ----KFSNS-------SHNSQVNQEVE--------------------ERREKDWGYKTDE 622
Query: 482 IDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 523
ID SV DELP EIQ E++++LRP+K+ + K G T IA YF P
Sbjct: 623 IDQSVFDELPVEIQRELRSFLRPNKQFNAGKSKGDGSTSSIAHYFPP 669
>gi|30694599|ref|NP_568638.2| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|23954185|emb|CAC94893.1| putative DNA polymerase eta [Arabidopsis thaliana]
gi|332007772|gb|AED95155.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 672
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/528 (51%), Positives = 331/528 (62%), Gaps = 62/528 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 257
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 258 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 317
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S DSDS K
Sbjct: 318 KTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKDSDSHK 377
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
KFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVSASKIV
Sbjct: 378 KFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVSASKIV 437
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQNELPGE 300
+ SGT SIM+YF S S D + ++ S SE S STE Q +P
Sbjct: 438 DIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEV 494
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVP 360
+ +++ + + + + D S + T+ S+ + NK ++ + +
Sbjct: 495 DTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQTKKIG 547
Query: 361 IKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQV 420
K N + K++G SI++ FK+ + + S E D S K+
Sbjct: 548 RKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSSASKRA 593
Query: 421 NIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIE 480
+ S S+ +QVN E + R W + +
Sbjct: 594 KLS------------SSSHNSQVNQEVE--------------------ESRETDWGYKTD 621
Query: 481 EIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 523
EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 622 EIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669
>gi|30694597|ref|NP_851130.1| DNA polymerase eta subunit [Arabidopsis thaliana]
gi|13430742|gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|21280927|gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|332007771|gb|AED95154.1| DNA polymerase eta subunit [Arabidopsis thaliana]
Length = 588
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/528 (51%), Positives = 331/528 (62%), Gaps = 62/528 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 114 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 173
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 174 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 233
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S DSDS K
Sbjct: 234 KTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKDSDSHK 293
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
KFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVSASKIV
Sbjct: 294 KFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVSASKIV 353
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQNELPGE 300
+ SGT SIM+YF S S D + ++ S SE S STE Q +P
Sbjct: 354 DIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEV 410
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVP 360
+ +++ + + + + D S + T+ S+ + NK ++ + +
Sbjct: 411 DTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQTKKIG 463
Query: 361 IKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQV 420
K N + K++G SI++ FK+ + + S E D S K+
Sbjct: 464 RKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSSASKRA 509
Query: 421 NIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIE 480
+ S S+ +QVN E + R W + +
Sbjct: 510 KLS------------SSSHNSQVNQEVE--------------------ESRETDWGYKTD 537
Query: 481 EIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 523
EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 538 EIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 585
>gi|23953869|gb|AAN39011.1| putative translesion synthesis polymerase RAD30 [Arabidopsis
thaliana]
Length = 672
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/528 (50%), Positives = 329/528 (62%), Gaps = 62/528 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETE TCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 198 QVLKETELTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 257
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 258 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 317
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S DSDS K
Sbjct: 318 KTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKDSDSHK 377
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
KFPSKSCP+RYG KIQED FNLFQA LRE++GS G+K QG+ WRIT LSVSASKIV
Sbjct: 378 KFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSVGIKPQGNKLETWRITGLSVSASKIV 437
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQNELPGE 300
+ SGT SIM+YF S S D + ++ S SE S STE Q +P
Sbjct: 438 DIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQAAMPEV 494
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVP 360
+ +++ + + + + D S + T+ S+ + NK ++ + +
Sbjct: 495 DTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQTKKIG 547
Query: 361 IKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSESNKKQV 420
K N + K++G SI++ FK+ + + S E D S K+
Sbjct: 548 RKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSSASKRA 593
Query: 421 NIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIE 480
+ S S+ +QVN E + R W + +
Sbjct: 594 KLS------------SSSHNSQVNQEVE--------------------ESRETDWGYKTD 621
Query: 481 EIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 523
EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 622 EIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 669
>gi|2660675|gb|AAC79146.1| similar to DNA-damage-inducible protein P [Arabidopsis thaliana]
gi|9758378|dbj|BAB08827.1| DNA-damage-inducible protein P [Arabidopsis thaliana]
Length = 689
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 270/533 (50%), Positives = 331/533 (62%), Gaps = 67/533 (12%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 210 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 269
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 270 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 329
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK-----SSD 176
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+ S D
Sbjct: 330 KTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRVPTSLSKD 389
Query: 177 SDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVS 236
SDS KKFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVS
Sbjct: 390 SDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVS 449
Query: 237 ASKIVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDA-APLSPSGSESYSTLNSTELQN 295
ASKIV + SGT SIM+YF S S D + ++ S SE S STE Q
Sbjct: 450 ASKIVDIPSGTSSIMRYFQSQPTVPSRS---ADGCVQGNVAMTASASEGCSEQRSTETQA 506
Query: 296 ELPGEQVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSR 355
+P + +++ + + + + D S + T+ S+ + NK ++
Sbjct: 507 AMPEVDTGVTYTLPNFENQDKDIDLVSEKDVVSCPSNE--ATDVSTQSESNK-----GTQ 559
Query: 356 MRSVPIKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCLSES 415
+ + K N + K++G SI++ FK+ + + S E D S
Sbjct: 560 TKKIGRKMNNSKE-----KNRGMPSIVDIFKNYNATPPSKQETQE---------DSTVSS 605
Query: 416 NKKQVNIPKERLDNSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESW 475
K+ + S S+ +QVN E + R W
Sbjct: 606 ASKRAKLS------------SSSHNSQVNQEVE--------------------ESRETDW 633
Query: 476 KLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVK---QGFT--IADYFSP 523
+ +EID SV DELP EIQ E++++LR +K+ + K G T IA YF P
Sbjct: 634 GYKTDEIDQSVFDELPVEIQRELRSFLRTNKQFNTGKSKGDGSTSSIAHYFPP 686
>gi|358348538|ref|XP_003638302.1| DNA polymerase eta [Medicago truncatula]
gi|355504237|gb|AES85440.1| DNA polymerase eta [Medicago truncatula]
Length = 543
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/325 (72%), Positives = 262/325 (80%), Gaps = 4/325 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP SSV+GLL+S PIKKMKQLGGK
Sbjct: 197 MQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPHSSVEGLLESFPIKKMKQLGGK 256
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LGTSLQ++LG+ TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGISGEEV+ RLLPKSHGS
Sbjct: 257 LGTSLQSDLGINTVGDLLQFSEEKLQQRYGINTGTWLWNIARGISGEEVEGRLLPKSHGS 316
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALKT+ASVQHWLN+L EELSERL SD++QNKRIAHTLTLHA A+K DSDS
Sbjct: 317 GKTFPGPQALKTIASVQHWLNELGEELSERLDSDMDQNKRIAHTLTLHARAYKKGDSDSH 376
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LFQ+GLR+FLG + KT GS + W ITALSVSASKI
Sbjct: 377 KKFPSKSCPLRYGTTKIQEDALTLFQSGLRDFLGLYNSKTNGSE-NKWGITALSVSASKI 435
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFID-AAPLSPSGSESYSTLNSTELQNELPG 299
VP+ SGT SI KYF+ GS+S Q DN ID AP SPSGSE+ + ELQ E P
Sbjct: 436 VPIPSGTHSITKYFSETFPHGSSSNQSVDNVIDEVAPSSPSGSENCMGVIPNELQLECPE 495
Query: 300 EQVWIEHSMADLGQLEMKANTWNGL 324
E + H A L Q +K +NGL
Sbjct: 496 EDTGVNHPKACLDQQILKG--FNGL 518
>gi|449526991|ref|XP_004170496.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 557
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/337 (65%), Positives = 256/337 (75%), Gaps = 1/337 (0%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLDSLPIKKMKQLGGK
Sbjct: 197 MQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSLPIKKMKQLGGK 256
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGEEVQ RLLP SHGS
Sbjct: 257 LGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEVQCRLLPNSHGS 316
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT HA+A++ SDSDS
Sbjct: 317 GKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHATAYRLSDSDSH 376
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYG AKIQED NLF+AGLR++LGS+ G +GWRIT+LSVSASKI
Sbjct: 377 KKFPSKSCPLRYGAAKIQEDALNLFKAGLRDYLGSYRANILGDSNNGWRITSLSVSASKI 436
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 300
+ + SG CSI KY + ++SEQ DN I L SG +YS ++S E +E GE
Sbjct: 437 MTIPSGMCSITKYLHVQHSSCTSSEQPQDNDIQETALH-SGCTNYSVMDSNEAHDERTGE 495
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGT 337
++ IE LG + + D S K+ T
Sbjct: 496 EMKIEDEHDRLGCTDYSVDLCEAFDKSTGEEKEEKAT 532
>gi|224075345|ref|XP_002304597.1| predicted protein [Populus trichocarpa]
gi|222842029|gb|EEE79576.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/256 (81%), Positives = 236/256 (92%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
M+VLKET+FTCSAGIAHNKMLAKL SGMNKPAQQT VP SSVKGLL+SLPIKKMKQLGGK
Sbjct: 96 MEVLKETQFTCSAGIAHNKMLAKLVSGMNKPAQQTVVPSSSVKGLLESLPIKKMKQLGGK 155
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LGTSLQ +LGV+TVGDLL+FSE+KLQE +G NTGTWLW+IARGI+GEEVQ RLLPKSHG+
Sbjct: 156 LGTSLQTDLGVSTVGDLLQFSEEKLQERFGINTGTWLWSIARGINGEEVQGRLLPKSHGA 215
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GKSFPGPRALKT+ASVQHWLNQLC+EL+ER+C DL+QNK+IAHT T++ASA+KS DS+S
Sbjct: 216 GKSFPGPRALKTIASVQHWLNQLCDELNERICCDLDQNKQIAHTFTVYASAYKSCDSESY 275
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGTAKIQED FNLFQAGLRE++GS GVKT G H++GW IT+LSVSASKI
Sbjct: 276 KKFPSKSCPLRYGTAKIQEDAFNLFQAGLREYIGSHGVKTLGHHHNGWGITSLSVSASKI 335
Query: 241 VPVLSGTCSIMKYFNG 256
V + SGT SI KYF+G
Sbjct: 336 VAIPSGTGSITKYFHG 351
>gi|414880429|tpg|DAA57560.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 623
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 251/535 (46%), Positives = 318/535 (59%), Gaps = 90/535 (16%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQLGGK
Sbjct: 170 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGK 229
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPKSHG
Sbjct: 230 LGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPKSHGC 289
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA AFK ++ DS
Sbjct: 290 GKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARAFKKNEHDSM 349
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+ASKI
Sbjct: 350 KKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTGWGITSLSVTASKI 401
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 300
+ SGT SI++Y GP + + +PD+ AA L+ +S L N++ E
Sbjct: 402 FDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALAI--PDSSFVPEDPSLDNDVFVE 457
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVP 360
+ E PS S + + T S+S+ K + ++ R+
Sbjct: 458 PIHEEE-----------------CQPSTSEKEDDNNTHSASAFSAKKCRANEEKRI---- 496
Query: 361 IKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDC-------LS 413
K +G SSIL F G S H+ ++ L+ C S
Sbjct: 497 --------SKKLPGVQGTSSILKFLSRGQ----STLHEKRKSDGLI----CSHQGPGSSS 540
Query: 414 ESNKKQV-NIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQR 471
E+ K N+P E D N+T C S N
Sbjct: 541 EAYKAGAHNVPAEAEDRNNTNSCAEPSGSN------------------------------ 570
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 526
+W +++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+ YF P+++
Sbjct: 571 --TWTFNLQDIDPAVVEELPPEIQREIQGWVRPSKHPITKRRGSTISSYFPPARS 623
>gi|242054469|ref|XP_002456380.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
gi|241928355|gb|EES01500.1| hypothetical protein SORBIDRAFT_03g035050 [Sorghum bicolor]
Length = 636
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 252/535 (47%), Positives = 316/535 (59%), Gaps = 103/535 (19%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQLGGK
Sbjct: 196 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV T+GDLL F+EDKLQE YG NTGTWLW ARGISGEEV+ RLLPKSHG
Sbjct: 256 LGSSLQDDLGVETIGDLLSFTEDKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA A K ++ DS
Sbjct: 316 GKTFPGPRALKNSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARASKENERDST 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+ASKI
Sbjct: 376 KKFPSKSCPLRYGTRKIQEDAMKLFESGLHEFLES--------QNTGWSITSLSVTASKI 427
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 300
+ SGT SI++Y GP+ AAP P+ +S S L N++ +
Sbjct: 428 FDIPSGTSSILRYIKGPN--------------SAAP--PAIPDSSSVPEDPSLDNDVFVK 471
Query: 301 QVWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVP 360
+ E PS S K+ + T S S++ + Q + R+
Sbjct: 472 PIHEEQCQ-----------------PSTS-EKEDNNTHSVSTISAKQCQANKEKRI---- 509
Query: 361 IKSNQQEHKKSALKDKGASSILNFFKSGDLSCSSGNHDTEHAETLLPLGDCL-------S 413
K + KG SSIL F G S H+ ++ L+ C S
Sbjct: 510 --------SKKLPEVKGTSSILKFLSRGQ----STFHEKRKSDGLI----CSHQGPGSSS 553
Query: 414 ESNK-KQVNIPKERLD-NSTGDCLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQR 471
E+NK ++ N+P + D N T C S N
Sbjct: 554 EANKAEENNVPADAEDRNHTNSCAEPSGSN------------------------------ 583
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 526
+W I++IDP+V++ELP EIQ EIQ W+RPSK P ++G TI+ YF P+++
Sbjct: 584 --TWMFNIQDIDPAVVEELPPEIQREIQGWVRPSKHPSTKRRGSTISSYFPPARS 636
>gi|145281849|gb|ABP49609.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 442
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 217/242 (89%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 257
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 258 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 317
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPGPRALK++++VQHWLNQL EELSERL SDLEQNKRIA TLTLHASAF+S DSDS K
Sbjct: 318 KTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNKRIASTLTLHASAFRSKDSDSHK 377
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
KFPSKSCP+RYG KIQED FNLFQA LRE++GSFG+K QG+ WRIT LSVSASKIV
Sbjct: 378 KFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIKPQGNKLETWRITGLSVSASKIV 437
Query: 242 PV 243
+
Sbjct: 438 DI 439
>gi|255574476|ref|XP_002528150.1| DNA polymerase eta, putative [Ricinus communis]
gi|223532448|gb|EEF34241.1| DNA polymerase eta, putative [Ricinus communis]
Length = 560
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/275 (73%), Positives = 220/275 (80%), Gaps = 25/275 (9%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQVLKETEFTCSAGIAHNKM + L D KQLGGK
Sbjct: 197 MQVLKETEFTCSAGIAHNKMDCNI--------------------LFDC-----RKQLGGK 231
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQNELGV TVGDLL+FSE+KLQ+ YG NTGTWLWNIARGI+GEEVQ RLLPKSHGS
Sbjct: 232 LGSSLQNELGVDTVGDLLQFSEEKLQDRYGINTGTWLWNIARGINGEEVQGRLLPKSHGS 291
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GKSFPGP+ALKT+ASVQHWLNQLCEELSERLCSDLEQNKR+AHTLTLHASA+KSSDSDS
Sbjct: 292 GKSFPGPQALKTIASVQHWLNQLCEELSERLCSDLEQNKRMAHTLTLHASAYKSSDSDSH 351
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKS PLRYGTAKIQED FNLFQAGLRE+LG+ GVK GSH++GW IT LSVSA+KI
Sbjct: 352 KKFPSKSGPLRYGTAKIQEDAFNLFQAGLREYLGAHGVKVLGSHHNGWGITGLSVSANKI 411
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAA 275
+ + SGT SIMKYFNG F S+Q PD+FI A
Sbjct: 412 IDLPSGTSSIMKYFNGQSSFHCPSKQTPDSFIHDA 446
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 438 SNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDE 497
S N V + KE L A + DR Q +R ESW +I+EIDPSVI+ELP EIQDE
Sbjct: 475 SEVNLVELGKESLL--AEHRANYDRHNLTQNAER-ESWNYKIDEIDPSVINELPPEIQDE 531
Query: 498 IQAWLRPSKRPHRVKQGFTIADYFSPSK 525
++AWL+P KR VK+G TIA YFSP K
Sbjct: 532 VRAWLQPHKRARIVKKGATIAHYFSPPK 559
>gi|414880431|tpg|DAA57562.1| TPA: hypothetical protein ZEAMMB73_640506 [Zea mays]
Length = 480
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/278 (67%), Positives = 221/278 (79%), Gaps = 10/278 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQLGGK
Sbjct: 196 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV T+GDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPKSHG
Sbjct: 256 LGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGTWLWKTARGISGEEVEDRLLPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGPRALK ASV+ WL+QLCEELSER+ SDL QNKRIA TLTLHA AFK ++ DS
Sbjct: 316 GKTFPGPRALKYSASVKGWLDQLCEELSERIQSDLNQNKRIAQTLTLHARAFKKNEHDSM 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL EFL S +GW IT+LSV+ASKI
Sbjct: 376 KKFPSKSCPLRYGTGKIQEDAMRLFESGLHEFL--------ESQNTGWGITSLSVTASKI 427
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLS 278
+ SGT SI++Y GP + + +PD+ AA L+
Sbjct: 428 FDIPSGTSSILRYIKGPSSAAALT--IPDSPSSAAALA 463
>gi|222619273|gb|EEE55405.1| hypothetical protein OsJ_03511 [Oryza sativa Japonica Group]
Length = 621
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 210/258 (81%), Gaps = 8/258 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGK
Sbjct: 183 VKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGK 242
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG
Sbjct: 243 LGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGC 302
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K + SDS
Sbjct: 303 GKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNKSDSI 362
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVSASKI
Sbjct: 363 KKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVSASKI 414
Query: 241 VPVLSGTCSIMKYFNGPD 258
+ GT SI++Y GP+
Sbjct: 415 FDIPIGTSSILRYIKGPN 432
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 525
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 565 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 618
>gi|57900369|dbj|BAD87579.1| putative DNA polymerase [Oryza sativa Japonica Group]
Length = 634
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 210/258 (81%), Gaps = 8/258 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGK
Sbjct: 196 VKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG
Sbjct: 256 LGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K + SDS
Sbjct: 316 GKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNKSDSI 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVSASKI
Sbjct: 376 KKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVSASKI 427
Query: 241 VPVLSGTCSIMKYFNGPD 258
+ GT SI++Y GP+
Sbjct: 428 FDIPIGTSSILRYIKGPN 445
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 525
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 631
>gi|115440035|ref|NP_001044297.1| Os01g0757800 [Oryza sativa Japonica Group]
gi|57900368|dbj|BAD87578.1| putative DNA polymerase [Oryza sativa Japonica Group]
gi|113533828|dbj|BAF06211.1| Os01g0757800 [Oryza sativa Japonica Group]
Length = 642
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 182/258 (70%), Positives = 210/258 (81%), Gaps = 8/258 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGK
Sbjct: 196 VKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG
Sbjct: 256 LGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALK ASV+ WL++LCEELSER+ SDL QNKRIA TLTL+A A K + SDS
Sbjct: 316 GKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACKKNKSDSI 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL +FLGS K W IT+LSVSASKI
Sbjct: 376 KKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK--------WSITSLSVSASKI 427
Query: 241 VPVLSGTCSIMKYFNGPD 258
+ GT SI++Y GP+
Sbjct: 428 FDIPIGTSSILRYIKGPN 445
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 526
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K+
Sbjct: 578 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAKS 632
>gi|326524061|dbj|BAJ97041.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 542
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 174/256 (67%), Positives = 206/256 (80%), Gaps = 8/256 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQLGGK
Sbjct: 196 VKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+E+KLQE YG NTGTWLW ARGISGEEV+ RLLPKSHG
Sbjct: 256 LGSSLQDDLGVETVGDLLGFTEEKLQEYYGVNTGTWLWKTARGISGEEVEDRLLPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGP+ALK +SV+ WL++LCEELSER+ SDL NKR+A TLTL A A K ++ +S
Sbjct: 316 GKTFPGPKALKNNSSVKSWLDKLCEELSERIQSDLSCNKRVAQTLTLQARASKENEGNSM 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++GL +F GS +GW IT+LSV+ASKI
Sbjct: 376 KKFPSKSCPLRYGTGKIQEDAMKLFESGLHDFW--------GSQNAGWSITSLSVTASKI 427
Query: 241 VPVLSGTCSIMKYFNG 256
+ SGT SI+KY G
Sbjct: 428 FDIPSGTNSILKYIKG 443
>gi|357136514|ref|XP_003569849.1| PREDICTED: DNA polymerase eta-like [Brachypodium distachyon]
Length = 632
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/254 (66%), Positives = 202/254 (79%), Gaps = 8/254 (3%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ L SLP+KKMKQLGGK
Sbjct: 196 IKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDFLASLPVKKMKQLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+E+KLQ+ YG NTGTWLW ARGISGEEV+ R+LPKSHG
Sbjct: 256 LGSSLQDDLGVKTVGDLLTFTEEKLQDYYGVNTGTWLWKTARGISGEEVEDRILPKSHGC 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPG +ALK ASV+ WL++LCEELSER+ SDL NKR+A TLTLHA A K ++ +
Sbjct: 316 GKTFPGSKALKNNASVKSWLDKLCEELSERIQSDLNSNKRVAQTLTLHARACKENECNLM 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
KKFPSKSCPLRYGT KIQED LF++ L +F GS +GW IT+LSV+ASKI
Sbjct: 376 KKFPSKSCPLRYGTGKIQEDAMKLFESALHDFW--------GSRNTGWSITSLSVTASKI 427
Query: 241 VPVLSGTCSIMKYF 254
SGT SI++Y
Sbjct: 428 FDDTSGTNSILRYI 441
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 475 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 526
W +E+IDP+V+ ELP EIQ EIQ W RPSK+ +G TI+ YF P+++
Sbjct: 581 WMFNVEDIDPAVVGELPLEIQREIQGWTRPSKQASTKPRGHTISSYFPPARS 632
>gi|449434198|ref|XP_004134883.1| PREDICTED: DNA polymerase eta-like [Cucumis sativus]
Length = 506
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 143/173 (82%), Positives = 157/173 (90%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
MQVLKETEFTCSAGIAHNKMLAKLAS MNKPAQQT VP S VKGLLDSLPIKKMKQLGGK
Sbjct: 202 MQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTVVPLSCVKGLLDSLPIKKMKQLGGK 261
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SL+++LGV TVGDLLKF E KLQE YG NTGTWLWNIARG SGEEVQ RLLP SHGS
Sbjct: 262 LGSSLESDLGVNTVGDLLKFPEQKLQERYGINTGTWLWNIARGSSGEEVQCRLLPNSHGS 321
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
GKSFPGP+AL+T+ASVQHWL +L EELSERL SDL+QN+R+AHTLT HA+A++
Sbjct: 322 GKSFPGPQALRTIASVQHWLTELSEELSERLSSDLDQNRRMAHTLTFHATAYR 374
>gi|302770725|ref|XP_002968781.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
gi|300163286|gb|EFJ29897.1| hypothetical protein SELMODRAFT_90560 [Selaginella moellendorffii]
Length = 444
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 150/243 (61%), Positives = 177/243 (72%), Gaps = 3/243 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ LL +LPI K+ +LGGK
Sbjct: 196 LAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESLLATLPISKIGKLGGK 255
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+G+EVQ R LPKSH S
Sbjct: 256 LGQELEGELGVKTVGDLLQFSELKLQDMYGPNTGTWLWNTARGINGDEVQDRTLPKSHSS 315
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGPRALKT+ +V +WL +L E L RL DL QN R AH LT+HAS S +
Sbjct: 316 GKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLLTIHASCHIVSRATEA 375
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGSHYSGWRITALSVSAS 238
KF SKS PLRYG KI ED+ LF+ L EF S G K Q S W +T LS++AS
Sbjct: 376 PKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSEITSSWAVTGLSLTAS 434
Query: 239 KIV 241
I+
Sbjct: 435 NIM 437
>gi|302822456|ref|XP_002992886.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
gi|300139334|gb|EFJ06077.1| hypothetical protein SELMODRAFT_136073 [Selaginella moellendorffii]
Length = 436
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/243 (61%), Positives = 176/243 (72%), Gaps = 3/243 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ VL ETEFTCSAG+AHNKMLAKL+SGM+KPAQQT VP S+V+ LL +LPI K+ +LGGK
Sbjct: 188 LAVLAETEFTCSAGVAHNKMLAKLSSGMHKPAQQTLVPSSAVESLLATLPISKIGKLGGK 247
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG L+ ELGV TVGDLL+FSE KLQ+ YG NTGTWLWN ARGI+G+EVQ R LPKSH S
Sbjct: 248 LGQELEGELGVKTVGDLLQFSEVKLQDMYGPNTGTWLWNTARGINGDEVQDRTLPKSHSS 307
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPGPRALKT+ +V +WL +L E L RL DL QN R AH LT+HAS +
Sbjct: 308 GKTFPGPRALKTLETVVYWLKELAETLQLRLDEDLSQNNRTAHLLTIHASCHIEGRATEA 367
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG--SFGVKTQGSHYSGWRITALSVSAS 238
KF SKS PLRYG KI ED+ LF+ L EF S G K Q S W +T LS++AS
Sbjct: 368 PKFSSKSRPLRYGVDKIVEDSRYLFERSLHEFCSHQSAG-KEQSEITSSWAVTGLSLTAS 426
Query: 239 KIV 241
I+
Sbjct: 427 NIM 429
>gi|168033798|ref|XP_001769401.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679321|gb|EDQ65770.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 446
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 128/243 (52%), Positives = 163/243 (67%), Gaps = 5/243 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL ET+FTCSAGI HNKMLAKL S M+KPAQQT +P S V LL ++P+KK+ LGGKLG
Sbjct: 196 VLAETQFTCSAGIGHNKMLAKLTSSMHKPAQQTLIPSSYVPTLLATIPLKKIGHLGGKLG 255
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
SL +LGV T GDL++FS+ KLQE YG NTG WLW++ARG +G+EV+A++LPKS GK
Sbjct: 256 KSLTEDLGVKTPGDLIQFSKLKLQELYGVNTGNWLWDVARGKNGDEVKAKVLPKSISCGK 315
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA-FKSSDSDSRK 181
+F G AL + SV +WL ++C+EL E+L DLE + R A L HA+ + + K
Sbjct: 316 TFAGRTALTNMTSVMYWLGEMCDELQEKLDIDLEVHNRKAKLLVFHAAVQLRGGNPQPGK 375
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL----GSFGVKTQGSHYSGWRITALSVSA 237
KFPSKSCP+RYG KI D LF+ GLR+F VK + W +TALS+ A
Sbjct: 376 KFPSKSCPIRYGKEKILADARILFERGLRDFCPVNKSLSPVKGSSNSKCEWAVTALSIGA 435
Query: 238 SKI 240
I
Sbjct: 436 GGI 438
>gi|145281847|gb|ABP49608.1| translesion synthesis DNA polymerase eta splice variant
[Arabidopsis thaliana]
Length = 350
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 115/136 (84%), Positives = 127/136 (93%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQT VP+++V+ LL SLPIKKMKQLGGKL
Sbjct: 198 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPYAAVQELLSSLPIKKMKQLGGKL 257
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GTSLQ +LGV TVGDLL+FSE KLQE YG NTGTWLWNIARGISGEEVQ RLLPKSHGSG
Sbjct: 258 GTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWNIARGISGEEVQGRLLPKSHGSG 317
Query: 122 KSFPGPRALKTVASVQ 137
K+FPGPRALK++++V+
Sbjct: 318 KTFPGPRALKSLSTVR 333
>gi|125527765|gb|EAY75879.1| hypothetical protein OsI_03798 [Oryza sativa Indica Group]
Length = 498
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/139 (76%), Positives = 123/139 (88%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP S+V+ L SLPIKKMKQLGGK
Sbjct: 223 VKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMKQLGGK 282
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG+SLQ++LGV TVGDLL F+EDKLQE YG NTGTWLW IARGISGEEV+ RLLPKSHG
Sbjct: 283 LGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLPKSHGC 342
Query: 121 GKSFPGPRALKTVASVQHW 139
GK+FPGP+ALK ASV+ +
Sbjct: 343 GKTFPGPKALKNNASVKEF 361
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 472 SESWKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 525
S +W +E+IDP+V++ELP EIQ EI W+RP K+ +G TI+ YF P+K
Sbjct: 442 SSTWMFNVEDIDPAVVEELPPEIQREIHGWIRPPKQSSSKTRGSTISSYFQPAK 495
>gi|348501702|ref|XP_003438408.1| PREDICTED: DNA polymerase eta [Oreochromis niloticus]
Length = 685
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/283 (42%), Positives = 160/283 (56%), Gaps = 22/283 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L SLP+ K++ LGGKLG
Sbjct: 212 VEKHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLDSVTELFSSLPVGKIRNLGGKLG 271
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
TS+ LG+ +GDL +FS+ +L++ +G TG WL+++ RGI E V+ R LPKS G K
Sbjct: 272 TSITETLGIENMGDLTRFSKAQLEQHFGEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSK 331
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+ D R
Sbjct: 332 NFPGKTSLATKEQVQYWLHQLALELEERLTKDREVNGRVAKMLTVGVRQL----GDKRMS 387
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY KI DTF + ++ + T G+H + W ++ L +SASK
Sbjct: 388 SFSRCCALVRYEATKISSDTFAIIKS----------LNTAGNHQAAWTPPLSMLYLSASK 437
Query: 240 IVPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGS 282
V S I + + STS Q P +P +GS
Sbjct: 438 FSDV-SSAGGIAGFLSS----DSTSTQPPREPKHVSPCKQTGS 475
>gi|432904760|ref|XP_004077403.1| PREDICTED: DNA polymerase eta-like [Oryzias latipes]
Length = 708
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 144/241 (59%), Gaps = 17/241 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L +SLPI K++ LGGK+G
Sbjct: 215 VEKQTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLESVTELFNSLPIGKIRNLGGKMG 274
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ L V +GDL +FS+ +L + +G TG WL+++ RG+ E V+ R LPKS G K
Sbjct: 275 ASIIETLKVENMGDLTRFSQSQLVQHFGEKTGQWLYDLCRGVESEAVKPRQLPKSIGCSK 334
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+ D R
Sbjct: 335 NFPGKTSLATKEQVQYWLHQLALELEERLNKDKETNGRVAKLLTVGVRQL----GDKRPS 390
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L Y AK+ D+F + ++ + T G+H + W +T L +SASK
Sbjct: 391 SFSRCCALVHYEAAKLSSDSFAIIKS----------LNTAGNHQAAWTPPLTLLHLSASK 440
Query: 240 I 240
Sbjct: 441 F 441
>gi|410901122|ref|XP_003964045.1| PREDICTED: DNA polymerase eta-like [Takifugu rubripes]
Length = 707
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 141/241 (58%), Gaps = 17/241 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV+ L SLP+ K++ LGGKLG
Sbjct: 206 VEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDLFSSLPVGKIRNLGGKLG 265
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +FS +L + +G TG WL+++ RGI E V+ R LPKS G K
Sbjct: 266 ASITETLGVENMGELTRFSLAQLGQHFGEKTGQWLYDLCRGIDFEAVKPRQLPKSIGCSK 325
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WL+QL EL ERL D E N R+A LT+ D R
Sbjct: 326 NFPGKTSLATKEQVQYWLHQLALELEERLTKDREVNGRVAKLLTVGVRQL----GDKRAN 381
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY K+ D+F + ++ + T G+H W + L +SASK
Sbjct: 382 SFSRCCALVRYEAPKLATDSFAIIRS----------LNTAGAHQETWTPPLAMLHLSASK 431
Query: 240 I 240
Sbjct: 432 F 432
>gi|94158209|ref|NP_001035337.1| DNA polymerase eta [Danio rerio]
gi|92098322|gb|AAI15308.1| Zgc:136881 [Danio rerio]
Length = 743
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 150/266 (56%), Gaps = 17/266 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T F CSAGI+HNK+LAKLA G+NKP +QT +P SSV L +LPI K++ LGGKLG
Sbjct: 203 VEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVPQLFSTLPISKIRNLGGKLG 262
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+S+ L V +GDL +FS +L++ +G TG WL+++ RGI E V+ R LPKS G K
Sbjct: 263 SSITETLSVENMGDLTRFSRAQLEQHFGDKTGPWLYDLCRGIEFEPVKPRQLPKSIGCSK 322
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F G L+T VQ+WL+QL EL ERL D + N R+A LT+ S S
Sbjct: 323 NFAGKTCLRTKQQVQYWLHQLALELEERLNKDRDVNGRVARQLTVGVRQAGGQRSGSF-- 380
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY K+ D+ + ++ + T G+H W +T L +SASK
Sbjct: 381 --SRCCALVRYDAMKMTNDSLTIIKS----------LNTAGAHQEAWSPALTLLHLSASK 428
Query: 240 IVPVLSGTCSIMKYFNGPDKFGSTSE 265
S + + + F D S S+
Sbjct: 429 FSDAPSSSSAGITGFLSSDAASSPSQ 454
>gi|390332295|ref|XP_001183938.2| PREDICTED: DNA polymerase eta-like [Strongylocentrotus purpuratus]
Length = 774
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 153/267 (57%), Gaps = 21/267 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+T F CSAGI+HNKMLAK+A G +KP +Q+ +P + + ++PI+K + LGGKLG
Sbjct: 336 VFKDTGFRCSAGISHNKMLAKIACGFHKPNRQSVLPPEGLDKVYKTIPIRKFRNLGGKLG 395
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ +LGV +GDLL+++E +LQ+ Y TGTWL++I RGI E V+ R L KS G K
Sbjct: 396 HSISEDLGVEYMGDLLRYTEKQLQKRYSEKTGTWLYSICRGIDDEPVRPRQLAKSTGCSK 455
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS-AFKSSDSDSRK 181
+FPG AL T V+HW L EE+ RL + E N R A LT+ A K + +
Sbjct: 456 TFPGKNALDTRDKVKHWFRSLAEEVEHRLLREEETNNRTAKHLTVSVGQAGKPLMTTA-- 513
Query: 182 KFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW--RITALSVSAS 238
S+SC + + + KI +D F++ Q + G+H + W IT L +SAS
Sbjct: 514 ---SRSCAIHQISSEKIAKDCFSVIQ----------NLNHAGNHQAAWSPAITYLGISAS 560
Query: 239 KIVPVLSGTCSIMKYF--NGPDKFGST 263
K V S ++ F +GP K +T
Sbjct: 561 KFVEGGSSKSGSIQSFLSSGPSKPATT 587
>gi|449496783|ref|XP_004174688.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase eta [Taeniopygia
guttata]
Length = 699
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/271 (40%), Positives = 148/271 (54%), Gaps = 23/271 (8%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V + T F CSAGI+HNK LAKLA G+NKP +QT V V L LP+ ++ LGGK
Sbjct: 200 VAVEEATGFRCSAGISHNKTLAKLACGLNKPNRQTLVSARFVPQLFSQLPVSSIRNLGGK 259
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LGT++ + LGV +G+L +FSE +LQ +G TG+WL+++ RGI E V+ R LP+S G
Sbjct: 260 LGTAITDILGVEYIGELTQFSETELQTHFGDKTGSWLYDLCRGIEEEPVKNRYLPQSIGC 319
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K+FPG AL T +VQHWL QL EL RL D QN R+A L + D+R
Sbjct: 320 SKNFPGKLALATQKAVQHWLLQLALELESRLNKDRSQNHRVARQLMV----VIRQQGDTR 375
Query: 181 KKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SA 237
S+ C L RY K+ D F L Q G+H + W +SV SA
Sbjct: 376 V---SRLCALSRYDAQKMCNDAFTLIQT----------CNVAGAHQAAWSPPLISVQLSA 422
Query: 238 SKIVPVLSGTCSIMKYFNG---PDKFGSTSE 265
SK ++ + I + G PD +TS+
Sbjct: 423 SKFSEPITLSTGIATFLTGDAQPDGTATTSQ 453
>gi|340368085|ref|XP_003382583.1| PREDICTED: DNA polymerase eta-like [Amphimedon queenslandica]
Length = 583
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 145/242 (59%), Gaps = 16/242 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L E FTCSAGI+HNKMLAKLA+GM+KP QQT +P S V + + +KK++ LGGKLG
Sbjct: 199 ILNEVGFTCSAGISHNKMLAKLAAGMHKPNQQTILPQSQVDVVFSTTLLKKVRHLGGKLG 258
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+Q++L + VG L ++S LQE +G TG+WL+ + RGI E++ R++ KS G GK
Sbjct: 259 EQVQDKLKIECVGQLQEYSLKVLQEKFGLKTGSWLYELCRGICHEKISNRIITKSIGCGK 318
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK- 181
+FPGP LKT +V++WL QL EL ERL D+ +N R A ++T+H + S +R
Sbjct: 319 NFPGPSKLKTAKAVKYWLEQLSRELVERLEEDMTENTRQAQSITVHFLPEGQASSVARTF 378
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
PS Y T+ I +++N G + V + SH + W I + +SA K
Sbjct: 379 ALPS------YNTSLIVNNSWNAINKGHKP------VTNEESHLT-WTTGILNIHLSAGK 425
Query: 240 IV 241
V
Sbjct: 426 FV 427
>gi|321458271|gb|EFX69342.1| hypothetical protein DAPPUDRAFT_228708 [Daphnia pulex]
Length = 695
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 144/266 (54%), Gaps = 9/266 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T F CSAGI++NKMLAKLA G+NKP +QT +PF SV+ + P+KK++ LGGKLG
Sbjct: 195 VYEKTGFRCSAGISNNKMLAKLACGINKPNKQTVLPFRSVEEFFTTFPLKKVRNLGGKLG 254
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ E TT+ D++K E LQE + T TWL+ ARG+ E V +R LPKS G K
Sbjct: 255 LVLREEFHCTTMADIVKIPERVLQERFDSKTATWLFWYARGVDHESVSSRRLPKSIGCNK 314
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F G AL + + HWL +LC E+SERL D E N R A LTL + D R
Sbjct: 315 NFTGLAALDSREKISHWLEELCAEVSERLEKDRETNNRTAKLLTLTVRL----EGDIRPY 370
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVP 242
++S PL K+ ++ A L QG+ +T L VSASK V
Sbjct: 371 SYTRSIPLTSSYEKM-----HMANACLAVISKENPCFKQGNTRVPVVVTCLGVSASKFVD 425
Query: 243 VLSGTCSIMKYFNGPDKFGSTSEQLP 268
L I ++F + + E+ P
Sbjct: 426 QLENNSRIDRFFVTKNSAETNKEKEP 451
>gi|53134355|emb|CAG32324.1| hypothetical protein RCJMB04_23b13 [Gallus gallus]
Length = 693
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 136/243 (55%), Gaps = 20/243 (8%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV L +P+ ++ LGGK
Sbjct: 200 VAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGK 259
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI E V+ R LP+S G
Sbjct: 260 LGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGC 319
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K+FPG AL T VQHWL QL EL RL D QN R+A L + D+R
Sbjct: 320 SKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQLMV----VIRMQGDTR 375
Query: 181 KKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SA 237
S+ C + RY KI D F L Q G+H + W +SV +A
Sbjct: 376 L---SRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGAHQAAWSPPLISVHLAA 422
Query: 238 SKI 240
SK
Sbjct: 423 SKF 425
>gi|148227394|ref|NP_001087074.1| DNA-directed DNA polymerase eta [Xenopus laevis]
gi|50417752|gb|AAH77989.1| Polh-prov protein [Xenopus laevis]
Length = 684
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +ET F CSAGIAHNK+LAKLA G+NKP +QT + SV GL LPI K++ LGGKLG
Sbjct: 203 VEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQGSVPGLFSELPIGKIRHLGGKLG 262
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
TS++ L V +G L +F+ LQ +G TG+WL+++ RGI E V+ R LPKS G K
Sbjct: 263 TSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLYSLCRGIEDEPVKPRQLPKSIGCSK 322
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WL QL EL RL D + N R+A LT+ + S
Sbjct: 323 NFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDANNRVAKLLTVGLNQMGKRLYGSM-- 380
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY KI D F L L SF G H + W +T L +SASK
Sbjct: 381 --SRCCALTRYDAQKISSDAFVL--------LKSFNAA--GMHQAAWSPPLTLLQLSASK 428
Query: 240 I 240
Sbjct: 429 F 429
>gi|60686908|gb|AAX35543.1| DNA polymerase eta [Xenopus laevis]
Length = 684
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 137/241 (56%), Gaps = 17/241 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +ET F CSAGIAHNK+LAKLA G+NKP +QT + SV GL LPI K++ LGGKLG
Sbjct: 203 VEEETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQGSVPGLFSELPIGKIRHLGGKLG 262
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
TS++ L V +G L +F+ LQ +G TG+WL+++ RGI E V+ R LPKS G K
Sbjct: 263 TSIKEILDVEYIGQLTQFTVQHLQNHFGDKTGSWLYSLCRGIEDEPVKPRQLPKSIGCSK 322
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WL QL EL RL D + N R+A LT+ + S
Sbjct: 323 NFPGKTSLSTREQVQYWLLQLSLELEGRLQKDRDANNRVAKLLTVGLNQMGKRLYGSM-- 380
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY KI D F L L SF G H + W +T L +SASK
Sbjct: 381 --SRCCALTRYDAQKISSDAFVL--------LKSFNAA--GMHQAAWSPPLTLLQLSASK 428
Query: 240 I 240
Sbjct: 429 F 429
>gi|50838832|ref|NP_001001304.1| DNA polymerase eta [Gallus gallus]
gi|31442180|dbj|BAC77302.1| polymerase eta [Gallus gallus]
Length = 673
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/243 (42%), Positives = 136/243 (55%), Gaps = 20/243 (8%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV L +P+ ++ LGGK
Sbjct: 200 VAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGK 259
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG ++ + LGV +G++ KFSE +LQ +G TG+WL+++ RGI E V+ R LP+S G
Sbjct: 260 LGVAITDILGVEYIGEVTKFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGC 319
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K+FPG AL T VQHWL QL EL RL D QN R+A L + D+R
Sbjct: 320 SKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQLMV----VIRMQGDTR 375
Query: 181 KKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SA 237
S+ C + RY KI D F L Q G+H + W +SV +A
Sbjct: 376 L---SRFCAVTRYDAQKIFNDAFALIQ----------NCNMAGAHQAAWSPPLISVHLAA 422
Query: 238 SKI 240
SK
Sbjct: 423 SKF 425
>gi|326915374|ref|XP_003203993.1| PREDICTED: DNA polymerase eta-like [Meleagris gallopavo]
Length = 554
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/264 (40%), Positives = 142/264 (53%), Gaps = 23/264 (8%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V K T F CSAGI+HNKMLAKLA G+NKP +QT V SV L +P+ ++ LGGK
Sbjct: 61 VAVEKATGFRCSAGISHNKMLAKLACGLNKPNRQTLVSSRSVPQLFSQMPVSSIRNLGGK 120
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG ++ + LGV +G + +FSE +LQ +G TG+WL+++ RGI E V+ R LP+S G
Sbjct: 121 LGVAITDILGVEYIGQVTQFSEMELQTHFGDKTGSWLYDLCRGIDDEPVKNRHLPQSIGC 180
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K+FPG AL T VQHWL QL EL RL D QN R+A L + D+R
Sbjct: 181 SKNFPGKTALATQKEVQHWLLQLALELESRLIKDRSQNHRVAKQLMV----VIRMQGDTR 236
Query: 181 KKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSV--SA 237
S+ C + RY KI D F L Q G+H + W +SV +A
Sbjct: 237 L---SRFCAVTRYDAQKIFSDAFALIQ----------NCNMAGTHQAAWSPPLISVHLAA 283
Query: 238 SKI-VPVL--SGTCSIMKYFNGPD 258
SK P +G S + PD
Sbjct: 284 SKFSAPTFLSAGIASFLTSDTSPD 307
>gi|302822400|ref|XP_002992858.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
gi|300139306|gb|EFJ06049.1| hypothetical protein SELMODRAFT_431020 [Selaginella moellendorffii]
Length = 808
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 125/209 (59%), Gaps = 27/209 (12%)
Query: 56 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLP 115
+LGGKLG L+ ELGV TVG LL+FSE KLQ+ YG NTGTWLWN +RGI+G+EVQ R LP
Sbjct: 8 KLGGKLGQELEGELGVKTVGGLLQFSEVKLQDMYGPNTGTWLWNTSRGINGDEVQDRTLP 67
Query: 116 KSHGSGKSFPGPRALKTVAS--------VQHWLNQLCEELSERLCSDLEQNKRIA-HTLT 166
KSH SGK+FPGP+ALKT+ + V +WL +L E L RL DL QN R A H LT
Sbjct: 68 KSHSSGKTFPGPQALKTLETLRATFLLQVVYWLKELAETLQLRLDEDLSQNNRTAQHLLT 127
Query: 167 LHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
+HAS S + KF SKS PLRYG KI AG K Q S
Sbjct: 128 IHASCHIESRATEAPKFSSKSRPLRYGVDKI--------SAG----------KEQSEITS 169
Query: 227 GWRITALSVSASKIVPVLSGTCSIMKYFN 255
W +T LS++AS I+ G I +Y +
Sbjct: 170 SWAVTGLSLTASNIMAKPMGVNPITQYVD 198
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 475 WKLRIEEIDPSVIDELPKEIQDEIQAWLRPSKRPHRVKQGFTIADYFSPSK 525
W+ + EEIDPSV ELP EIQ E+Q R + R F+ D+ K
Sbjct: 267 WEYKQEEIDPSVFAELPSEIQQELQVTHRRNLHKERTVASFSDQDHLKHEK 317
>gi|395832422|ref|XP_003789270.1| PREDICTED: DNA polymerase eta [Otolemur garnettii]
Length = 414
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 91/203 (44%), Positives = 122/203 (60%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
K+T F CSAGI+HNK+LAKLA G+NKP +QT V +SV L +PI+K++ LGGKLG S
Sbjct: 206 KQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHASVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGGKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A LT+ D R
Sbjct: 326 PGKTALSTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLTVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 382 RRCCALSRYDAYKMSHDAFAVIK 404
>gi|307168868|gb|EFN61792.1| DNA polymerase eta [Camponotus floridanus]
Length = 764
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/529 (27%), Positives = 246/529 (46%), Gaps = 64/529 (12%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KET+F CSAGIA NK+LAKLA G++KP QT +P ++V L +LP+KK++ LGGK G
Sbjct: 143 IYKETKFRCSAGIAQNKILAKLACGLHKPNCQTILPKTAVSSLFSTLPVKKVRNLGGKFG 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG +GDL+++S ++LQ+ + TG WL+NIARGI E V RLL KS + K
Sbjct: 203 DIVVESLGCNVMGDLVQYSLEQLQKRFDEKTGFWLYNIARGIDDEPVTNRLLSKSIAACK 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG +A+ ++ ++HW L E+ ERL D E+N+R A LT+ +++ + S+
Sbjct: 263 KFPGKQAITSLEVLKHWAKDLTAEVCERLEQDYEENQRRATLLTISYHYYQNRSTVSQ-- 320
Query: 183 FPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
++S L Y KI ++ TQ + + +SASK V
Sbjct: 321 --TRSLVLNSYKPDKIASQCVDVITKA-----------TQCP------VAYMGISASKFV 361
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGEQ 301
P S +K+F S++ ID + + S ++ + E++ E P
Sbjct: 362 PSKESD-SFLKFFKNVTSRDRKSDKASSE-IDKSGIVYSPRNMINSSSHLEIKEEKPFTI 419
Query: 302 VWIEHSMADLGQLEMKANTWNGLDPSCSISKQTSGTESSSSLDQNKPQNRDDSRMRSVPI 361
V E S + K + S + + + S L+ + N +DS + +
Sbjct: 420 VSKEDSFLKAERKLQKIKESPMIKKSVTRTNERIIKTSEKILNNSLNMNSEDSPISKRVV 479
Query: 362 KSNQQEHKKSALKDKGASSI------------LNFFKSG-----DLSCSSGNHDTEHAET 404
K Q +++ LKDK S + +N +K+G D GN D + E
Sbjct: 480 KLVQVCNERDKLKDKRLSDVKINKNDFQDSFFMNIYKTGKQEYPDNESMDGNIDVKQLEY 539
Query: 405 LLPLGDCLSESNKKQVNIPKERLDNSTGD-----CLSESNQNQVNIPKERLAEAATTSTS 459
+ KQ ++ E+ NS D C+ E + + + + + + S
Sbjct: 540 -----------DGKQSSV-DEKSANSIDDYNSNLCIQEDAREKPSTSHAYIHVSNNDANS 587
Query: 460 TDRCGSDQIQQRSESWKLR-----IEEIDPSVIDELPKEIQDEIQAWLR 503
+ + Q S +LR +++IDP ++ LP ++Q+E + + +
Sbjct: 588 MKKSNKETSVQEP-SVRLREIFPNLDDIDPDILSLLPTDLQEEARLYTK 635
>gi|195592306|ref|XP_002085876.1| GD12080 [Drosophila simulans]
gi|194197885|gb|EDX11461.1| GD12080 [Drosophila simulans]
Length = 889
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 127/213 (59%), Gaps = 7/213 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ + LG+ +G ++KFSE +LQ + GTWL+NI+RGI E V R KS G K
Sbjct: 279 EVVCDTLGIKFMGQVVKFSEVELQRKFDEKNGTWLFNISRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
FPG + + ++QHWL +L E+++RL D +E N+R H + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYV-----QDIDGEE 393
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 213
S+S L+ Y I + +L +A + FL
Sbjct: 394 VASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|24668444|ref|NP_649371.2| DNApol-eta [Drosophila melanogaster]
gi|7296509|gb|AAF51794.1| DNApol-eta [Drosophila melanogaster]
Length = 885
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 138/256 (53%), Gaps = 16/256 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTETASLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G ++KFSE LQ + GTWL+NI+RGI E V R KS G K
Sbjct: 279 EVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
FPG + + ++QHWL +L E+++RL D +E N+R H + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYV-----QDIDGEE 393
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITALSVSAS 238
S+S LR Y I + +L +A + FL GS I L +S
Sbjct: 394 VASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNNA-------IKFLGISVG 446
Query: 239 KIVPVLSGTCSIMKYF 254
K V SG + + F
Sbjct: 447 KFETVSSGQNKLQEMF 462
>gi|10440504|dbj|BAB15799.1| dpol-eta [Drosophila melanogaster]
gi|12083719|dbj|BAB20905.1| DNA polymerase eta [Drosophila melanogaster]
gi|16198323|gb|AAL14000.1| SD05329p [Drosophila melanogaster]
Length = 885
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/256 (39%), Positives = 138/256 (53%), Gaps = 16/256 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLTETASLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G ++KFSE LQ + GTWL+NI+RGI E V R KS G K
Sbjct: 279 EVVCETLGIKFMGQVVKFSEVDLQRKFDEKNGTWLFNISRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
FPG + + ++QHWL +L E+++RL D +E N+R H + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYV-----QDIDGEE 393
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITALSVSAS 238
S+S LR Y I + +L +A + FL GS I L +S
Sbjct: 394 VASSRSTALRDYDQESIVRLSLDLIKANTKTFLRPGSESALNNA-------IKFLGISVG 446
Query: 239 KIVPVLSGTCSIMKYF 254
K V SG + + F
Sbjct: 447 KFETVSSGQNKLQEMF 462
>gi|402867084|ref|XP_003897698.1| PREDICTED: DNA polymerase eta isoform 2 [Papio anubis]
Length = 414
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIK 404
>gi|402867082|ref|XP_003897697.1| PREDICTED: DNA polymerase eta isoform 1 [Papio anubis]
Length = 712
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 14/255 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ D F + + + G++T+ S +T L + A+K
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSAS 432
Query: 244 LSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 433 APSSCTDITSFLSSD 447
>gi|380813878|gb|AFE78813.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 14/255 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ D F + + + G++T+ S +T L + A+K
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSAS 432
Query: 244 LSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 433 APSSCTDITSFLSSD 447
>gi|195348695|ref|XP_002040883.1| GM22104 [Drosophila sechellia]
gi|194122393|gb|EDW44436.1| GM22104 [Drosophila sechellia]
Length = 889
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 126/213 (59%), Gaps = 7/213 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G ++KFSE +LQ + GTWL+NI+RGI E V R KS G K
Sbjct: 279 EVVCETLGIKFMGQVVKFSEVELQRKFDEKNGTWLFNISRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
FPG + + ++QHWL +L E+++RL D +E N+R H + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKHMVVQYV-----QDIDGEE 393
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 213
S+S L+ Y I + +L +A + FL
Sbjct: 394 VASSRSTALKDYDQESIVRFSLDLIRANTKTFL 426
>gi|403261356|ref|XP_003923089.1| PREDICTED: DNA polymerase eta isoform 3 [Saimiri boliviensis
boliviensis]
Length = 648
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 142 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 201
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 202 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 262 NFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 317
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L RY K+ D F++ + + G++T+ S +T L + A+K
Sbjct: 318 SLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP----PLTMLFLCATKFS 368
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 369 ASAPSSCTDITSF 381
>gi|383419309|gb|AFH32868.1| DNA polymerase eta [Macaca mulatta]
Length = 712
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 140/255 (54%), Gaps = 14/255 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ D F + + + G++T+ S +T L + A+K
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIKN-----CNASGIQTEWSP----PLTMLFLCATKFSAS 432
Query: 244 LSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 433 APSSCTDITSFLSSD 447
>gi|193785802|dbj|BAG51237.1| unnamed protein product [Homo sapiens]
Length = 701
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIK 404
>gi|55626670|ref|XP_518497.1| PREDICTED: DNA polymerase eta isoform 4 [Pan troglodytes]
gi|410211556|gb|JAA02997.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410262340|gb|JAA19136.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410302290|gb|JAA29745.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330903|gb|JAA34398.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330905|gb|JAA34399.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330907|gb|JAA34400.1| polymerase (DNA directed), eta [Pan troglodytes]
gi|410330909|gb|JAA34401.1| polymerase (DNA directed), eta [Pan troglodytes]
Length = 713
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|426353300|ref|XP_004044135.1| PREDICTED: DNA polymerase eta [Gorilla gorilla gorilla]
Length = 415
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIK 404
>gi|351707957|gb|EHB10876.1| DNA polymerase eta [Heterocephalus glaber]
Length = 711
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 15/254 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSQGSVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEVLGVEYMGELTQFTESQLQNHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDQSDNDRVATQLVVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ +D F + + + G++T+ S +T L + A+K
Sbjct: 382 RRCCALTRYDAYKMSQDAFAVIRN-----CNTSGIQTEWSP----PLTMLFLCATKFSVS 432
Query: 244 LSGTCS-IMKYFNG 256
G+C+ I + +G
Sbjct: 433 GPGSCTDITAFLSG 446
>gi|16041729|gb|AAH15742.1| POLH protein [Homo sapiens]
gi|119624614|gb|EAX04209.1| polymerase (DNA directed), eta, isoform CRA_a [Homo sapiens]
Length = 414
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 382 RRCCALTRYDAHKMSHDAFTVIK 404
>gi|5729982|ref|NP_006493.1| DNA polymerase eta [Homo sapiens]
gi|59798441|sp|Q9Y253.1|POLH_HUMAN RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
gi|5457144|gb|AAD43810.1|AF158185_1 xeroderma pigmentosum variant RAD30 [Homo sapiens]
gi|5138988|dbj|BAA81666.1| DNA polymerase eta [Homo sapiens]
gi|11463971|dbj|BAB18601.1| DNA polymerase eta [Homo sapiens]
gi|34732732|gb|AAQ81300.1| polymerase (DNA directed), eta [Homo sapiens]
gi|119624615|gb|EAX04210.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
gi|119624616|gb|EAX04211.1| polymerase (DNA directed), eta, isoform CRA_b [Homo sapiens]
Length = 713
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFTVIK 404
>gi|403261352|ref|XP_003923087.1| PREDICTED: DNA polymerase eta isoform 1 [Saimiri boliviensis
boliviensis]
Length = 710
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/253 (39%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L RY K+ D F++ + + G++T+ S +T L + A+K
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP----PLTMLFLCATKFS 430
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 431 ASAPSSCTDITSF 443
>gi|194377454|dbj|BAG57675.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 142 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 201
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 202 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 262 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 317
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 318 SLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|403261354|ref|XP_003923088.1| PREDICTED: DNA polymerase eta isoform 2 [Saimiri boliviensis
boliviensis]
Length = 414
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F++ +
Sbjct: 382 RRCCALTRYDAHKMSHDAFSVIK 404
>gi|221045690|dbj|BAH14522.1| unnamed protein product [Homo sapiens]
Length = 651
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 142 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 201
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 202 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 262 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 317
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 318 SLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|397526775|ref|XP_003833292.1| PREDICTED: DNA polymerase eta [Pan paniscus]
Length = 651
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 142 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 201
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 202 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 262 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 317
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 318 SLRRCCALTRYDAHKMSHDAFTVIK 342
>gi|193783756|dbj|BAG53738.1| unnamed protein product [Homo sapiens]
Length = 617
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 122 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 181
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 182 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 241
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 242 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 297
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 298 RRCCALTRYDAHKMSHDAFTVIK 320
>gi|299856826|pdb|3MR2|A Chain A, Human Dna Polymerase Eta In Complex With Normal Dna And
Incoming Nucleotide (Nrm)
gi|299856829|pdb|3MR3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
3't Of A Cpd In The Active Site (Tt1)
gi|299856832|pdb|3MR5|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
1bp Upstream Of The Active Site (Tt3)
gi|342351155|pdb|3SI8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With The
5't Of A Cpd In The Active Site (Tt2)
gi|386783389|pdb|4DL2|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Cg
Template (Gg0a)
gi|386783392|pdb|4DL3|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite Gg
Template (Gg0b).
gi|386783395|pdb|4DL4|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
3'g Of Cisplatin Crosslinked Gs (Pt-Gg1).
gi|386783398|pdb|4DL5|A Chain A, Human Dna Polymerase Eta Inserting Dcmpnpp Opposite The
5'g Of Cisplatin Crosslinked Gs (Pt-Gg2).
gi|386783401|pdb|4DL6|A Chain A, Human Dna Polymerase Eta Extending Primer Immediately
After Cisplatin Crosslink (Pt-Gg3).
gi|386783404|pdb|4DL7|A Chain A, Human Dna Polymerase Eta Fails To Extend Primer 2
Nucleotide After Cisplatin Crosslink (Pt-Gg4).
gi|394986303|pdb|4ECQ|A Chain A, Human Dna Polymerase Eta- Dna Ternary Complex: At Crystal
At Ph6.8(K+ Mes) With 1 Ca2+ Ion
gi|394986306|pdb|4ECR|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 40 Sec
gi|394986309|pdb|4ECS|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 80 Sec
gi|394986312|pdb|4ECT|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 140 Sec
gi|394986315|pdb|4ECU|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 200 Sec
gi|394986318|pdb|4ECV|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 230 Sec
gi|394986321|pdb|4ECW|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 250 Sec
gi|394986324|pdb|4ECX|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 7.0 For 300 Sec
gi|394986327|pdb|4ECY|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986330|pdb|4ECZ|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.5 (Na+ Mes) With 1 Ca2+ Ion
gi|394986333|pdb|4ED0|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 6.8 (Na+ Mes) With 1 Ca2+ Ion
gi|394986336|pdb|4ED1|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.0 (Na+ Mes) With 1 Ca2+ Ion
gi|394986339|pdb|4ED2|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.2 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986342|pdb|4ED3|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: At Crystal
At Ph 7.5 (Na+ Hepes) With 1 Ca2+ Ion
gi|394986345|pdb|4ED6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The At Crystal At Ph 6.7 For 15 Hr, Sideway
Translocation
gi|394986348|pdb|4ED7|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Tg Crystal
At Ph 7.0 (K+ Mes) With 1 Ca2+ Ion
gi|394986351|pdb|4ED8|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex: Reaction
In The Tg Crystal At Ph 7.0, Normal Translocation
Length = 435
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 209 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 268
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 269 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 328
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 329 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 384
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 385 RRCCALTRYDAHKMSHDAFTVIK 407
>gi|299856835|pdb|3MR6|A Chain A, Human Dna Polymerase Eta - Dna Ternary Complex With A Cpd
2bp Upstream Of The Active Site (Tt4)
gi|374977693|pdb|3TQ1|A Chain A, Human Dna Polymerase Eta In Binary Complex With Dna
gi|386783428|pdb|4EEY|A Chain A, Crystal Structure Of Human Dna Polymerase Eta In Ternary
Complex With A Cisplatin Dna Adduct
Length = 435
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 120/203 (59%), Gaps = 5/203 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 209 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 268
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 269 VIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 328
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 329 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSL 384
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 385 RRCCALTRYDAHKMSHDAFTVIK 407
>gi|348576228|ref|XP_003473889.1| PREDICTED: DNA polymerase eta-like [Cavia porcellus]
Length = 712
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 142/255 (55%), Gaps = 14/255 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 207 RQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 266
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 267 VIEVLGIEYMGELTQFTESQLQNHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 326
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D + N R+A L + D R
Sbjct: 327 PGKTALATREQVQWWLLQLAQELEERLTKDQKDNDRVATQLAVSIRV----QGDKRLSSL 382
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ +D F + + + G++T+ S +T L + A+K
Sbjct: 383 RRCCALTRYDAHKMSQDAFAVIRN-----CNTSGIQTEWSP----PLTMLFLCATKFSVS 433
Query: 244 LSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 434 APASCTDITAFLSSD 448
>gi|73973002|ref|XP_532150.2| PREDICTED: DNA polymerase eta [Canis lupus familiaris]
Length = 712
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 101/257 (39%), Positives = 139/257 (54%), Gaps = 14/257 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPISKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALTTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L RY K+ D F + + + G+KT S +T L + A+K
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFAVIKN-----CNTSGIKTDWSP----PLTMLFLCATKFS 430
Query: 242 PVLSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 431 APAPSSCTDITTFLSSD 447
>gi|431838335|gb|ELK00267.1| DNA polymerase eta [Pteropus alecto]
Length = 712
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 138/251 (54%), Gaps = 14/251 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI K++ LGGKLG S
Sbjct: 206 RQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHIPISKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSTL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ D F + + + GV+T+ S +T L + A+K
Sbjct: 382 RRCCALTRYDAHKMSHDAFAVIRN-----CNTSGVQTEWSP----PLTMLFLCATKFSAS 432
Query: 244 LSGTCSIMKYF 254
+C+ + F
Sbjct: 433 APSSCTDITVF 443
>gi|395534246|ref|XP_003769157.1| PREDICTED: DNA polymerase eta [Sarcophilus harrisii]
Length = 704
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 140/251 (55%), Gaps = 14/251 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L LPI K++ LGGKLG S
Sbjct: 206 RQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHLPISKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ + LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIDTLGVEYMGELTQFTELQLQNHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T V+ WL QL +EL ERL D N R+A LT+ D R
Sbjct: 326 PGKIALATQEQVKWWLLQLAQELEERLIKDRNDNDRVATQLTVSIRV----QGDRRLSSL 381
Query: 185 SKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L Y ++ D F L + + G+K + S +T L + A+K P
Sbjct: 382 RRCCALVCYDAHRMSNDAFALIRN-----CNTAGIKAEWSP----PLTMLFLCATKFSPS 432
Query: 244 LSGTCSIMKYF 254
+ +C+ + F
Sbjct: 433 VPPSCTDITSF 443
>gi|344263722|ref|XP_003403945.1| PREDICTED: DNA polymerase eta [Loxodonta africana]
Length = 718
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 140/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGI+HNK+LAKLA G+NKP QT V SV L +PI K++ LGGKLG
Sbjct: 207 IERQTGFQCSAGISHNKVLAKLACGLNKPNSQTLVSHGSVPQLFSQMPITKVRNLGGKLG 266
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G GK
Sbjct: 267 ASVVGILGIEYMGELTQFTESQLQSHFGEKNGSWLYAVCRGIEHDPVKPRQLPKTIGCGK 326
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A LT+ D R
Sbjct: 327 NFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRMATQLTVTIRV----QGDKRLS 382
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L Y K+ D F A LR + G++T+ S +T L +SA+K
Sbjct: 383 SLRRCCALTHYDAHKMSHDAF----AVLRN-CNTSGIQTEWSP----PLTMLFLSATKFY 433
Query: 242 PVLSGTCSIMKYF 254
+C + F
Sbjct: 434 ASGPSSCPDITVF 446
>gi|443700616|gb|ELT99496.1| hypothetical protein CAPTEDRAFT_172544 [Capitella teleta]
Length = 620
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 15/261 (5%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T F CSAGIA NKMLAKL G+NKP +QT +PFS++ + +KK++ GGK G S+
Sbjct: 203 TGFRCSAGIASNKMLAKLVCGINKPNKQTLLPFSNILHFFGGVKVKKVRGFGGKFGESVC 262
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+L V T+GD+ +FS ++LQE +G TG+WL++ RG E+V R L KS G K+F G
Sbjct: 263 EQLQVETMGDIRRFSRNQLQECFGDKTGSWLYDTCRGQETEDVIDRQLTKSVGCSKNFRG 322
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
P L T V+ WL+++ +E+ ERL D N R+A +L +H + S + S
Sbjct: 323 PEMLVTKEQVKLWLSRMSKEIEERLLKDRASNNRVAKSLHVHIQYVVNKKVTSASRCASL 382
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIVPVL 244
+RY K+ +D + L R L H S W IT + +SASK +
Sbjct: 383 ---VRYNAQKLADDAYLLLSKFNRSLL----------HQSSWSPPITCMGISASKFSDLS 429
Query: 245 SGTCSIMKYFNGPDKFGSTSE 265
+ I + P F S S+
Sbjct: 430 NTGRDIKSFLQDPSAFPSVSQ 450
>gi|301757340|ref|XP_002914510.1| PREDICTED: DNA polymerase eta-like [Ailuropoda melanoleuca]
gi|281345709|gb|EFB21293.1| hypothetical protein PANDA_002412 [Ailuropoda melanoleuca]
Length = 712
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 122/213 (57%), Gaps = 9/213 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KET F CSAGI+HNK+LAKLA G+NKP QT V SV L +PI +++ LGGKLG
Sbjct: 204 IEKETGFQCSAGISHNKVLAKLACGLNKPNHQTLVSLGSVPQLFSQMPISRIRNLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYGMCRGIEHDPVRPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALATQEQVQWWLLQLAHELEERLTKDRNDNDRVATQL----AVIIRVQGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ----AGLR 210
+ C L RY K+ D F + + +G+R
Sbjct: 380 SVRRCCALTRYDAHKMSHDAFAVIRNCNTSGIR 412
>gi|194752317|ref|XP_001958469.1| GF23499 [Drosophila ananassae]
gi|190625751|gb|EDV41275.1| GF23499 [Drosophila ananassae]
Length = 876
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 121/212 (57%), Gaps = 5/212 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+G+NKP +QT +P + DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGLNKPNKQTILPLGEIPAFFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ +G L KFSE +LQ Y GTWL+NIARGI E V R KS G K
Sbjct: 279 EVVCETMGIKFLGQLCKFSEAELQRKYDEKNGTWLFNIARGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG + + S+QHWL +L E++ERL D +N R A + + D D +
Sbjct: 339 KFPGRNNITGLKSLQHWLGELSSEINERLEKDFIENNRKAKQMVVQY----IQDIDGHEV 394
Query: 183 FPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 213
S+S L+ Y + + L ++ + FL
Sbjct: 395 ASSRSTALKDYDKESLAKFALELIRSNTKTFL 426
>gi|194876038|ref|XP_001973703.1| GG13193 [Drosophila erecta]
gi|190655486|gb|EDV52729.1| GG13193 [Drosophila erecta]
Length = 890
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + L DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLADTASLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G ++KF+E +LQ + GTWL+NI+RGI E V R KS G K
Sbjct: 279 EVVCETLGIKYIGQVVKFTEVELQRKFDEKNGTWLFNISRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG + + ++QHWL +L E+++RL D +N R A + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKQMVVQY----VQDIDGEEV 394
Query: 183 FPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 213
S+S L+ Y I +L +A + FL
Sbjct: 395 ASSRSTALKDYDQESIVRFALDLIRANTKTFL 426
>gi|340710696|ref|XP_003393922.1| PREDICTED: DNA polymerase eta-like [Bombus terrestris]
Length = 820
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 158/292 (54%), Gaps = 32/292 (10%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +T F CSAGIA NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G
Sbjct: 201 IFDKTGFRCSAGIAENKILAKLACGLHKPNRQTILPATAVSTLYSTLPIKKVRNLGGKFG 260
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T + L +GDL+++S LQ+ + TG WL+NIARGI E V RL+ KS G+ K
Sbjct: 261 TVVVESLNCNVMGDLVQYSLQYLQKRFDEKTGLWLYNIARGIDNEPVNIRLVSKSIGACK 320
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG +A+ ++ ++HW +L E+ ERL DLE+N+R A +T+ +++ + S+
Sbjct: 321 KFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENERRATLMTICYQYYQNKATVSQ-- 378
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG--SHYSGWRITALSVSASKI 240
S+SC T N ++ G+ ++ S + I L +SA K
Sbjct: 379 --SRSC------------TLNSYKP------GNMAIRCVQIISKSTQCPIAYLGISAGKF 418
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTE 292
+P G+ + +F ++E P IDA + YS N+T+
Sbjct: 419 IPA-KGSGNFRNFF-------KSNESEPHKKIDAQTKNTKVESIYSVENTTK 462
>gi|296198265|ref|XP_002746624.1| PREDICTED: DNA polymerase eta [Callithrix jacchus]
Length = 709
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 140/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT + SV L +PI K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLLSHGSVPQLFSQMPIHKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVTEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L RY K+ D F++ + + G++T+ S +T L + A+K
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFSVIKN-----YNTSGIQTEWSP----PLTMLFLCATKFS 430
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 431 ASAPSSCTDITSF 443
>gi|91094387|ref|XP_971192.1| PREDICTED: similar to DNA polymerase eta [Tribolium castaneum]
gi|270014910|gb|EFA11358.1| hypothetical protein TcasGA2_TC011515 [Tribolium castaneum]
Length = 679
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 128/228 (56%), Gaps = 5/228 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V K T + CSAGIAHNK+LAKL ++KP +QT +P V+ ++ PI K+K LGGK
Sbjct: 184 EVFKVTGYKCSAGIAHNKILAKLVCSLHKPNKQTILPQEEVEKFFETTPINKVKNLGGKF 243
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +L + VTT+G L K E L + Y TG WL NIARGI E V +L+ KS
Sbjct: 244 GQTLSEDFHVTTMGQLAKIPEKLLVQKYDEKTGNWLHNIARGIDMEPVTTKLIAKSIACC 303
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAFKSSDSDSR 180
K+FPG AL T +VQHWL +L E+SERL DL++N R A + + A D S
Sbjct: 304 KNFPGKTALVTEENVQHWLGKLAAEMSERLDKDLKENNRRAKQIIVSFAQEVNKKDVHST 363
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 228
+ P S Y KI + F + + R+ G++ +K G + S +
Sbjct: 364 RTHPLVS----YNEQKIAQAAFEVVKRFCRKSDGTYHLKFLGLNASSF 407
>gi|126310086|ref|XP_001366117.1| PREDICTED: DNA polymerase eta [Monodelphis domestica]
Length = 704
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 139/253 (54%), Gaps = 18/253 (7%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
K T F CSAGI+HNK+LAKLA G+NKP +QT V SV L LPI K++ LGGKLG S
Sbjct: 206 KHTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSHLPIGKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIGTLGVEYMGELTQFTELQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T V+ WL QL +EL ERL D + N R+A L + D R
Sbjct: 326 PGITALTTQEQVKWWLLQLAQELEERLTKDQKDNDRVALQLAVSIRI----QGDKRLSSL 381
Query: 185 SKSCPLRYGTA-KIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIV 241
+ C L Y A K+ D F L + + G+KT+ W +T L + A+K
Sbjct: 382 RRCCALAYYDAHKMSSDAFALIRN-----CNTAGIKTE------WAPPLTMLFLCATKFS 430
Query: 242 PVLSGTCSIMKYF 254
P +C+ + F
Sbjct: 431 PSDPTSCTDITSF 443
>gi|350412770|ref|XP_003489756.1| PREDICTED: DNA polymerase eta-like [Bombus impatiens]
Length = 818
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 158/292 (54%), Gaps = 32/292 (10%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +T F CSAGIA NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G
Sbjct: 201 IFDKTGFRCSAGIAGNKILAKLACGLHKPNRQTILPAAAVSTLYSTLPIKKVRNLGGKFG 260
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L +GDLL++S LQ+ + TG+WL+NIARGI E V RL+ KS G+ K
Sbjct: 261 DVVVESLNCNVMGDLLQYSLQYLQKRFDEKTGSWLYNIARGIDNEPVNIRLVSKSIGACK 320
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG +A+ ++ ++HW +L E+ ERL DLE+N+R A +T+ +++ + S+
Sbjct: 321 KFPGKQAIVSLDVLEHWAGELSAEVCERLEQDLEENERRATLMTICYQYYQNKATVSQ-- 378
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG--SHYSGWRITALSVSASKI 240
S+SC T N ++ G+ ++ S + I L +SA K
Sbjct: 379 --SRSC------------TLNSYKP------GNMAIRCVQIISKSTQCPIAYLGISAGKF 418
Query: 241 VPVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTE 292
+P G+ + +F ++E P IDA + YS N+T+
Sbjct: 419 IPA-KGSGNFRNFF-------KSNESEPHKKIDAQTENTKVESIYSVENTTK 462
>gi|195379088|ref|XP_002048313.1| GJ11416 [Drosophila virilis]
gi|194155471|gb|EDW70655.1| GJ11416 [Drosophila virilis]
Length = 871
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 121/212 (57%), Gaps = 5/212 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P + + L D LP+ K+K LGGK G
Sbjct: 220 VKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAEIPALFDQLPVGKIKGLGGKFG 279
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ LGV +G +LK+SE +LQ G+WL NIARGI E V R KS G K
Sbjct: 280 ETVCETLGVKFLGQVLKYSEKELQRKLDEKNGSWLHNIARGIDLEAVTPRFYSKSIGCCK 339
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG + + ++QHWL +L E+++RL D +N R A + + D D ++
Sbjct: 340 KFPGRNNITGLKTLQHWLGELASEMNDRLEKDFIENNRKAKQMVVQY----VQDVDGQEV 395
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 213
S+S P+ Y + + L + + FL
Sbjct: 396 ASSRSTPINHYDQETLAKQALELIRTNTKTFL 427
>gi|384245783|gb|EIE19275.1| DNA/RNA polymerase, partial [Coccomyxa subellipsoidea C-169]
Length = 454
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 101/273 (36%), Positives = 144/273 (52%), Gaps = 24/273 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +E ++CSAGIAHNK+LAKLASGM+KP+QQT V V GL+ LPI K++QLGGK G
Sbjct: 166 VRRELGYSCSAGIAHNKILAKLASGMHKPSQQTLVTLDCVPGLMAGLPIPKLRQLGGKFG 225
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L +TTVG+L +L+ WL ++RGI EEV+ R LP+S GK
Sbjct: 226 EEIMTALNITTVGELSAVPLRRLEAVCSQADALWLHRLSRGIDDEEVKERQLPQSISCGK 285
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F G ALK +V WL +L +EL ER+ +D N+R+ LT+ + +
Sbjct: 286 TFRGHTALKAFPAVHKWLGELGDELEERITADRADNERVPRLLTV--GMWGEGGPGTSGG 343
Query: 183 FPSKSCPLRYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
S+SC LR ++ + ED L +K S GW IT+L ++AS
Sbjct: 344 SVSRSCQLRRPESQPMAEDGLKL-------------IKRWASDRPGWAITSLYMTASNFQ 390
Query: 242 PVLSGTCSIMKYF--------NGPDKFGSTSEQ 266
+G+ +I ++ P GST+ Q
Sbjct: 391 AAPTGSSTITRFLKPKSAPGQQSPPPSGSTAAQ 423
>gi|322796130|gb|EFZ18706.1| hypothetical protein SINV_03879 [Solenopsis invicta]
Length = 818
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 2/180 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGIA NK+LAKLA G++KP +QT +P +V L +LPIKK++ LGGK G
Sbjct: 200 IYRETGFRCSAGIAQNKILAKLACGLHKPNRQTILPEVAVSSLYSTLPIKKVRNLGGKFG 259
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ LG +GDL+++S ++LQ+ + TG WL+NIARGI E V RLL KS G+ K
Sbjct: 260 DNVIESLGCNVMGDLMQYSLEQLQKHFDEKTGFWLYNIARGIDDEPVTNRLLAKSIGACK 319
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
FPG +A+ ++ ++HW L E+ ERL D +N+R A L + H KS+ S +R
Sbjct: 320 QFPGKQAITSLEMLKHWAGDLAAEVCERLEEDFVENQRRATLLVISYHYYQNKSTISQTR 379
>gi|195496653|ref|XP_002095784.1| GE19515 [Drosophila yakuba]
gi|194181885|gb|EDW95496.1| GE19515 [Drosophila yakuba]
Length = 895
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAGIAHNK+LAKLA+GMNKP +QT +P + DSLP+ K+K LGGK G
Sbjct: 219 VKKETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAETASFFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G ++KF+E +LQ + GTWL+NI+RGI E V R KS G +
Sbjct: 279 EVVCETLGIKFMGQVVKFTEVELQRKFDEKNGTWLFNISRGIDMEAVTPRFYSKSIGCCQ 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG + + ++QHWL +L E+++RL D +N R A + + D D +
Sbjct: 339 KFPGRNNITGLKTLQHWLGELSSEINDRLEKDFIENNRRAKQMVVQY----VQDIDGEEV 394
Query: 183 FPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL 213
S+S L+ Y I + +L +A + FL
Sbjct: 395 ASSRSTALKDYDQESIVRFSLDLIKANTKTFL 426
>gi|195440450|ref|XP_002068055.1| GK12166 [Drosophila willistoni]
gi|194164140|gb|EDW79041.1| GK12166 [Drosophila willistoni]
Length = 864
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 123/212 (58%), Gaps = 4/212 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CSAG+AHNK+LAKLA+G+NKP +QT +P + GL ++LP+ K+K LGGK G
Sbjct: 220 VKKETGYECSAGVAHNKILAKLAAGLNKPNKQTILPLDEIPGLFETLPVGKIKGLGGKFG 279
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L + +G+LLKFSE +LQ + GTWL NI RGI E V R KS G K
Sbjct: 280 EIVCETLSIKFLGELLKFSEGELQRKFDEKNGTWLANICRGIDLECVTPRFYSKSIGCCK 339
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
FPG + + ++QHWL++L E++ERL D +E N+R + + + S +
Sbjct: 340 KFPGRNNITGLKTLQHWLSELATEITERLEKDAIENNRRAKQMVVQYVQDLDGEEVASSR 399
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFL 213
S + P Y + + +L +A + FL
Sbjct: 400 ---SNALPNHYDKETLANISLDLIKANTKTFL 428
>gi|410959244|ref|XP_003986222.1| PREDICTED: DNA polymerase eta [Felis catus]
Length = 712
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 119/205 (58%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIYKIRNLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R +PK+ G K
Sbjct: 264 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVRPRKIPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDRRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L Y K+ D F + +
Sbjct: 380 SLRRCCALTHYDAHKMSRDAFAVIR 404
>gi|383850772|ref|XP_003700950.1| PREDICTED: DNA polymerase eta-like [Megachile rotundata]
Length = 774
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 117/180 (65%), Gaps = 2/180 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET F CSAGI++NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G
Sbjct: 201 IYNETGFKCSAGISNNKILAKLACGLHKPNRQTILPPNAVSELYSTLPIKKVRNLGGKFG 260
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L +GDLL++S LQ+ + TG WL+NIARGI E V RL+ KS G+ K
Sbjct: 261 DVVIESLNCNVMGDLLQYSLQYLQKRFDDKTGLWLYNIARGIDNEPVTTRLISKSIGACK 320
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
FPG +A+ +V ++HW + E+ ERL DL++N+R A LT+ H KS+ + SR
Sbjct: 321 KFPGKQAITSVDVLRHWAGDMAAEVCERLEQDLQENERRATLLTVCYHYYQNKSTVTQSR 380
>gi|77735847|ref|NP_001029622.1| DNA polymerase eta [Bos taurus]
gi|73587313|gb|AAI03397.1| Polymerase (DNA directed), eta [Bos taurus]
gi|296474420|tpg|DAA16535.1| TPA: DNA-directed DNA polymerase eta [Bos taurus]
Length = 711
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 119/203 (58%), Gaps = 5/203 (2%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ + K+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L + +PI K++ LGGK
Sbjct: 202 VAIEKQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFNQVPISKIRNLGGK 261
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI + V+ R + K+ G
Sbjct: 262 LGASVIEILGVEYMGELTQFSESQLQSHFGERNGSWLYAMCRGIEHDPVKPRPITKTLGC 321
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
GK+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 322 GKNFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQLVVSMRI----QGDRR 377
Query: 181 KKFPSKSCPL-RYGTAKIQEDTF 202
+ C L Y K+ D F
Sbjct: 378 LSSLRRCCALTHYDAHKMSHDAF 400
>gi|195128223|ref|XP_002008564.1| GI11744 [Drosophila mojavensis]
gi|193920173|gb|EDW19040.1| GI11744 [Drosophila mojavensis]
Length = 894
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 5/212 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ET + CSAGIAHNK+LAKLA+GMNKP +QT +P + + L D LP+ K+K +GGK G
Sbjct: 220 VKAETGYECSAGIAHNKILAKLAAGMNKPNKQTILPLAQIPPLFDQLPVGKIKGMGGKFG 279
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ LGV +G +LK+SE LQ +GTWL NIARGI E V R KS G K
Sbjct: 280 ETVCETLGVKFLGQVLKYSEKDLQRKLDEKSGTWLHNIARGIDLEAVTPRFYSKSIGCCK 339
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
FPG + + ++QHWL +L E+++RL D +N R A + + D D ++
Sbjct: 340 KFPGRNNITGLKTLQHWLGELASEINDRLEKDFIENNRKAKQMVVQY----VQDIDGQEV 395
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFL 213
S+S PL + + + + L +A + FL
Sbjct: 396 ASSRSMPLNQCDQETLVKQSLELIKANTKTFL 427
>gi|260803774|ref|XP_002596764.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
gi|229282024|gb|EEN52776.1| hypothetical protein BRAFLDRAFT_211672 [Branchiostoma floridae]
Length = 354
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 100/152 (65%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +ET F CSAGI HNK+LAKL G++KP QQT +P +SV L +LPIKK++ GGKLG
Sbjct: 202 VERETGFHCSAGIGHNKVLAKLCCGLHKPKQQTVLPHASVPQLYSTLPIKKVRGCGGKLG 261
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
SL ELGV +G L FSE +LQ G GTWL+N+ RGI E V+ R + +S G GK
Sbjct: 262 ASLTEELGVEYMGQLAAFSEKELQAKCGDKCGTWLYNLCRGIDYEAVKDRQVAQSIGCGK 321
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD 154
+FPG L T V HWL QL EL+ERL D
Sbjct: 322 NFPGRECLDTKEKVLHWLTQLTSELAERLQKD 353
>gi|197245419|ref|NP_001127801.1| DNA-directed DNA polymerase eta [Nasonia vitripennis]
Length = 753
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 129/216 (59%), Gaps = 5/216 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V T F CSAGI+ NK+LAKLA G++KP +QT +P S+V L SLP+KK++ LGGKL
Sbjct: 196 EVYDTTGFRCSAGISFNKILAKLACGLHKPNRQTILPASAVPELYGSLPVKKVRNLGGKL 255
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + L + DLL +S LQ + TG WL+NIARGI E V RL+ KS G+
Sbjct: 256 GDMVIDSLKCNVMADLLPYSLQYLQNRFDEKTGMWLYNIARGIDSEPVTPRLVSKSIGAC 315
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K FPG +A+ + ++HW+ +L E+ ERL DLE+N+R A L + +F+ D +
Sbjct: 316 KRFPGKQAIVELDVLKHWIGELSAEVCERLEQDLEENERKASQLIV---SFQYC-QDKKL 371
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSF 216
S++ L Y K+ E + N+ ++ L SF
Sbjct: 372 VSQSRTVALTSYKQEKVAEQSLNIVVKATQQLLISF 407
>gi|307200513|gb|EFN80675.1| DNA polymerase eta [Harpegnathos saltator]
Length = 827
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 81/180 (45%), Positives = 117/180 (65%), Gaps = 2/180 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET F CSAGI+ NK+LAKLA G++KP +QT +P ++V L +L +KK++ LGGK G
Sbjct: 197 IYNETGFRCSAGISQNKILAKLACGLHKPNRQTILPEAAVASLYSTLSVKKVRNLGGKFG 256
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG +GDL+++S ++LQ+ + TG WL+NIARGI E V RLL KS G+ K
Sbjct: 257 DVVVESLGCNVMGDLMQYSLEQLQKHFDEKTGLWLYNIARGIDNEPVTNRLLSKSVGACK 316
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
FPG +A+ ++ ++HW L E+ ERL DL +N+R A LT+ H +S+ S SR
Sbjct: 317 KFPGKQAITSLEVLKHWAGDLAAEVCERLEQDLIENQRRATLLTISYHYYQNRSTVSQSR 376
>gi|380014904|ref|XP_003691455.1| PREDICTED: DNA polymerase eta-like [Apis florea]
Length = 700
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 114/174 (65%), Gaps = 2/174 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
F CSAGIA NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G +
Sbjct: 206 FKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLTLYSTLPIKKVRNLGGKFGDIVTES 265
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
L +GDLL++S LQ+ + TG WL+NIARGI E V RL+ KS G+ K FPG +
Sbjct: 266 LNCNVMGDLLQYSLQYLQKRFDEKTGLWLYNIARGIDNEPVTVRLVSKSIGACKKFPGKQ 325
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
A+ ++ ++HW+++L E+ ERL DL +N+R A +T+ H K+ S SR
Sbjct: 326 AITSLNMLKHWISELSAEICERLEQDLTENERRATLVTICYHYYQNKTIVSQSR 379
>gi|328786259|ref|XP_001122310.2| PREDICTED: DNA polymerase eta [Apis mellifera]
Length = 689
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/180 (43%), Positives = 116/180 (64%), Gaps = 2/180 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + F CSAGIA NK+LAKLA G++KP +QT +P ++V L +LPIKK++ LGGK G
Sbjct: 200 IFDKIGFKCSAGIAQNKILAKLACGLHKPNRQTILPAAAVLTLYSTLPIKKVRNLGGKFG 259
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L +GDLL++ LQ+ + TG WL+NIARGI E V RL+ KS G+ K
Sbjct: 260 HIVTESLNCNVMGDLLQYPLQYLQKRFDEKTGLWLYNIARGIDNEPVNVRLVSKSIGACK 319
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
FPG +A+ ++ ++HW+++L E+ ERL DL +N+R A +T+ H K++ S SR
Sbjct: 320 KFPGKQAIISLNMLKHWISELSAEICERLERDLMENERRATLVTICYHYYQNKTTVSQSR 379
>gi|198465285|ref|XP_001353578.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
gi|198150090|gb|EAL31091.2| GA20133 [Drosophila pseudoobscura pseudoobscura]
Length = 894
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 107/166 (64%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P + + GL DSLP+ K+K LGGK G
Sbjct: 219 VKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILPLAEIPGLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G L+K++E +LQ + GTWL+ ++RGI E V R KS G K
Sbjct: 279 EVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
FPG + + S+QHWL +L E+++RL D +N R A + +
Sbjct: 339 KFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIENNRKAKQMVVQ 384
>gi|195161139|ref|XP_002021427.1| GL25322 [Drosophila persimilis]
gi|194118540|gb|EDW40583.1| GL25322 [Drosophila persimilis]
Length = 892
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 107/166 (64%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+T + CSAGIAHNK+LAKLA+G+NKP +QT +P + + GL DSLP+ K+K LGGK G
Sbjct: 219 VKKDTGYDCSAGIAHNKILAKLAAGLNKPNKQTILPLAEIPGLFDSLPVGKIKGLGGKFG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ +G L+K++E +LQ + GTWL+ ++RGI E V R KS G K
Sbjct: 279 EVVCETLGIKFLGQLVKYTEGELQRKFDEKNGTWLFYMSRGIDLEAVTPRFYSKSIGCCK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
FPG + + S+QHWL +L E+++RL D +N R A + +
Sbjct: 339 KFPGRNNITGLKSLQHWLGELSIEINDRLEKDFIENNRKAKQMVVQ 384
>gi|440902446|gb|ELR53238.1| DNA polymerase eta [Bos grunniens mutus]
Length = 710
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 117/201 (58%), Gaps = 5/201 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L + +PI K++ LGGKLG
Sbjct: 204 IERQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFNQVPISKIRNLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +FSE +LQ +G G+WL+ + RGI + V+ R + K+ G K
Sbjct: 264 ASVIEILGVEYMGELTQFSEPQLQSHFGERNGSWLYAMCRGIEHDPVKPRPITKTLGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALSTRDQVQWWLLQLAQELEERLIKDRNANDRVATQLVVSMRI----QGDRRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTF 202
+ C L Y K+ D F
Sbjct: 380 SLRRCCALTHYDAHKMSHDAF 400
>gi|145352281|ref|XP_001420480.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580714|gb|ABO98773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 534
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 15/256 (5%)
Query: 4 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 63
+ E +T SAGIA NKMLAKL SGMNKPA QT + LLD LPI +++ LG K G
Sbjct: 227 VDELGYTLSAGIALNKMLAKLTSGMNKPASQTVLCPDHTSTLLDELPIDRIRGLGAKFGR 286
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 123
L + L V T+G+L + KL+E G W+ ++ G+ + V+AR +PKS G+GK+
Sbjct: 287 ELADGLNVKTIGELARTPLRKLEEVCGEEKAQWVRKVSLGLDDDPVKAREMPKSIGTGKT 346
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
F G A++++AS +HWL +L EL++R +D E+ R+ LTL S+ ++ S
Sbjct: 347 FRGALAIRSIASAKHWLAELTAELNDRCEADEEEWNRVPKLLTLGLSSPDERETSS--GH 404
Query: 184 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
S+ CPLR G ++ +D L S W IT +SVSAS V +
Sbjct: 405 CSRRCPLRPGADEMAQDALTLLS-------------KWASGRERWSITGMSVSASNFVSL 451
Query: 244 LSGTCSIMKYFNGPDK 259
+ +++ F K
Sbjct: 452 EKDSGDVVEMFKNATK 467
>gi|335292187|ref|XP_003356678.1| PREDICTED: DNA polymerase eta [Sus scrofa]
Length = 698
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T CSAGI+HNK+LAKLA ++KP +QT V SV + +PI K++ LGGKLG S
Sbjct: 206 RQTGLQCSAGISHNKVLAKLACALHKPNRQTLVSLGSVPQVFSQMPISKVRHLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI E V+ R + K+ G GK+F
Sbjct: 266 IIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHEPVRPRQVTKTLGCGKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 326 PGKTALVTREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRVL----GDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L Y K+ +D F A +R + + G++T+ S +T L + A+K
Sbjct: 382 RRCCALTHYDAHKMSQDAF----AAIRNY-NTSGIQTEWSP----PLTMLFLCATKFSAS 432
Query: 244 LSGT 247
+GT
Sbjct: 433 SAGT 436
>gi|156387566|ref|XP_001634274.1| predicted protein [Nematostella vectensis]
gi|156221355|gb|EDO42211.1| predicted protein [Nematostella vectensis]
Length = 345
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 103/149 (69%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL++T FTCSAG+A NK+LAKL G+NKP +QT +P S+V L ++P++K++ LGGKLG
Sbjct: 194 VLEKTGFTCSAGVATNKVLAKLCCGLNKPDKQTLLPHSAVTNLFKTMPLRKVRHLGGKLG 253
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L +EL V +GDLL+F + L+ +G G L+N+ RGI E V+AR LPKS GK
Sbjct: 254 SQLHSELNVEFMGDLLQFKINDLKAQFGSKNGELLYNLCRGIDNEPVRARQLPKSVSCGK 313
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
+FPG L T V+ W+ QL EEL ERL
Sbjct: 314 NFPGKTKLSTCQQVKFWMEQLVEELHERL 342
>gi|426250341|ref|XP_004018895.1| PREDICTED: DNA polymerase eta [Ovis aries]
Length = 708
Score = 158 bits (399), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 86/199 (43%), Positives = 116/199 (58%), Gaps = 5/199 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L + +PI +++ LGGKLG S
Sbjct: 205 RQTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFNQVPINRVRNLGGKLGAS 264
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +FSE +LQ +G G+WL+ + RGI + V+ R + K+ G K+F
Sbjct: 265 VIEILGVEYMGELTQFSESQLQSHFGERNGSWLYAMCRGIEHDPVKPRPITKTIGCSKNF 324
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 325 PGKTALSTRFQVQWWLLQLAQELEERLTKDRNANDRVATQLVVSMRI----QGDRRLSSL 380
Query: 185 SKSCPL-RYGTAKIQEDTF 202
+ C L Y K+ D F
Sbjct: 381 RRCCALTHYDAHKMSHDAF 399
>gi|347965825|ref|XP_321730.5| AGAP001404-PA [Anopheles gambiae str. PEST]
gi|333470336|gb|EAA01093.5| AGAP001404-PA [Anopheles gambiae str. PEST]
Length = 929
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T F CSAGIAHNK+LAKL +G +KP +QT +P +S+ L ++LP+KK+K LGGKLG
Sbjct: 213 VKERTGFECSAGIAHNKILAKLTAGFHKPNKQTILPINSIPKLYETLPLKKVKGLGGKLG 272
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L + + +L++F E LQ+ + G+W++ +ARGI E V A+ KS G K
Sbjct: 273 DQVCEVLKIKFMSELVQFPESVLQQHFEQRMGSWMYLMARGIDLEAVTAKFHSKSIGCCK 332
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAFKSSDSDSRK 181
FPG A+ +A++ HWLN+L E++ERL DL++N R A LT+ ++ + D S +
Sbjct: 333 RFPGKNAITGLATLHHWLNELASEVTERLEKDLDENNRTAKQLTVSYSQQIDNVDVSSTR 392
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ Y +I D + + F S T H I L +SA K
Sbjct: 393 SI----ALVAYDAERIAADALDAIKRNTERFFASNS--TTALHNP---IKFLGISAGKFE 443
Query: 242 PVLSGTCSIMK 252
P +G + +K
Sbjct: 444 PNGAGKGAGIK 454
>gi|291396262|ref|XP_002714741.1| PREDICTED: DNA-directed DNA polymerase eta [Oryctolagus cuniculus]
Length = 687
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 117/199 (58%), Gaps = 5/199 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T CSAGI+HNK+LAKLA G+NKP +QT V V L +PI+K++ LGGKLG+S
Sbjct: 206 RKTGLQCSAGISHNKVLAKLACGLNKPNRQTLVSHKFVPQLFSQVPIRKVRNLGGKLGSS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R +PKS G K+F
Sbjct: 266 VIAILGIEYMGELTQFTESQLQWHFGEKNGSWLYAMCRGIEHDPVRPRQIPKSVGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 326 PGQTALATPEQVQWWLLQLARELEERLTKDQTDNDRMATQLAVSIRV----QGDKRLSSL 381
Query: 185 SKSCPL-RYGTAKIQEDTF 202
+ C + RY K+ +D F
Sbjct: 382 RRCCAITRYDAHKMSQDAF 400
>gi|198430107|ref|XP_002128588.1| PREDICTED: similar to polymerase (DNA directed), eta [Ciona
intestinalis]
Length = 785
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 116/198 (58%), Gaps = 10/198 (5%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ + ++T F CSAGI+HNKML+KL+ G+NKP +QT +PF+ V GL ++ I K++ LGGK
Sbjct: 202 LAIYQQTSFRCSAGISHNKMLSKLSCGINKPNKQTILPFNMVAGLFQTIKIGKIRNLGGK 261
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG + GV +G L ++ L + +G TG WL+ + GI E V+ R + +S G
Sbjct: 262 LGKEIMFRFGVEKIGHLTNQTKQHLVDGFGEKTGLWLYEVCHGIDHEPVKERHVAQSVGC 321
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K+F G AL + V+HW+ L EL ERL D + N R++H LT+H
Sbjct: 322 SKNFTGNDALGSRNKVKHWVRCLTTELVERLNKDKQMNNRVSHALTIHIGI--------- 372
Query: 181 KKFPSKSCPL-RYGTAKI 197
KK S++CP+ RY I
Sbjct: 373 KKPISRTCPISRYDVDDI 390
>gi|327262355|ref|XP_003215990.1| PREDICTED: DNA polymerase eta-like [Anolis carolinensis]
Length = 689
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 140/257 (54%), Gaps = 17/257 (6%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T F CS GI+HNK+LAKLA G+NKP +QT V SV L +PI ++ LGGKLG S+
Sbjct: 208 TGFRCSVGISHNKVLAKLACGLNKPNRQTLVSQGSVPQLFSKMPIGNIRNLGGKLGASVT 267
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
LGV VG L++FSE +LQ +G TG+WL+++ RGI E V+ R LPKS G K+F G
Sbjct: 268 ELLGVEYVGQLIQFSELQLQMHFGDKTGSWLYDLCRGIEHEPVKPRQLPKSIGCSKNFRG 327
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
AL T VQHWL QL EL ERL D +QN R A L++ S + S+
Sbjct: 328 REALVTQKQVQHWLLQLALELEERLNKDRDQNNRTAKQLSIGIRMQGSKNPSGL----SR 383
Query: 187 SCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASKIVPV 243
C L +Y KI +D F + Q G + W +T L +SA+K V
Sbjct: 384 CCALSQYDAHKISQDAFAVIQ----------NCNAAGGLQAAWSPPVTLLQLSATKFVEE 433
Query: 244 LSGTCSIMKYFNGPDKF 260
++ + I + + ++
Sbjct: 434 MTSSGDITAFLSNDSQY 450
>gi|357624213|gb|EHJ75075.1| DNA polymerase eta [Danaus plexippus]
Length = 785
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 109/182 (59%), Gaps = 4/182 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ET + CSAGIAHNK+LAKL GMNKP +QT +P SV L +L +KK+K LGGK G
Sbjct: 192 VYAETGYQCSAGIAHNKILAKLVCGMNKPNKQTVLPKHSVNILYKTLSLKKVKHLGGKFG 251
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L ++T+G L +F+E LQ + G+WL+NIARG+ E VQAR PKS G K
Sbjct: 252 DHVAETLNISTMGQLQRFTEKDLQARFDEKNGSWLYNIARGVDLEPVQARFNPKSIGCCK 311
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH----TLTLHASAFKSSDSD 178
G AL+ + S++ WL L +E+ RL D +N RI + +L AS K S
Sbjct: 312 QLRGKAALQDLVSLRKWLRDLGDEIENRLEQDSLENNRIPKQMVVSFSLQASKGKRDISS 371
Query: 179 SR 180
SR
Sbjct: 372 SR 373
>gi|414884037|tpg|DAA60051.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 397
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/121 (64%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQLGGK
Sbjct: 271 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGK 330
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG-TWLWNIARGISGEEVQARLLPKSHG 119
LG+SLQ++LGV T+GDLL F+E+KLQE YG NTG + AR +E ++L + +G
Sbjct: 331 LGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTGHGMVAAFARAAWLKEYHEKVLVEIYG 390
Query: 120 S 120
S
Sbjct: 391 S 391
>gi|170034418|ref|XP_001845071.1| DNA polymerase eta [Culex quinquefasciatus]
gi|167875704|gb|EDS39087.1| DNA polymerase eta [Culex quinquefasciatus]
Length = 820
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 154/291 (52%), Gaps = 22/291 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T + CSAGIAHNK+LAKL +G NKP +QT +P S+ L +L IKK+K LGGKLG
Sbjct: 214 VKEKTGYECSAGIAHNKILAKLTAGFNKPNKQTVLPLKSISKLYQTLQIKKVKGLGGKLG 273
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L + + L +FSE +LQ + G+W++ +ARGI E V + KS G K
Sbjct: 274 EQVCELLKIEFMSQLTQFSEKQLQAHFDERMGSWMYLMARGIDLEAVTPKFNSKSIGCCK 333
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAFKSSDSDSRK 181
FPG A+ +A++QHWL +L E+ +RL DL++N R A +T+ +A +D S
Sbjct: 334 RFPGKNAITGLATLQHWLGELANEIQDRLEKDLDENNRTARQMTVSYAQQIGDNDVSS-- 391
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFL--GSFGVKTQGSHYSGWRITALSVSAS 238
++S PL Y +I +D + FL GS G + L +SA
Sbjct: 392 ---TRSVPLVCYEAERIAKDALEAIRRNTEVFLKQGSNGALNNAVKF-------LGISAG 441
Query: 239 KIVPVLSGTCSIMK--YFNGPDKF---GSTSEQLPDNFIDAAPLSPSGSES 284
K +G S +K + N K G TS+ P ++ + A +P+ ES
Sbjct: 442 KFENNATGKKSALKEMFSNIASKAPNPGETSKDAPTSY-NIASNAPNSGES 491
>gi|194223548|ref|XP_001497587.2| PREDICTED: DNA polymerase eta [Equus caballus]
Length = 713
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 136/251 (54%), Gaps = 14/251 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T CSAGI+HNK+LAKLA G+NKP QT + SV L +PI K++ LGGKLG S
Sbjct: 206 RQTGLQCSAGISHNKVLAKLACGLNKPNHQTLISHGSVPQLFSQMPISKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R + KS G K+F
Sbjct: 266 VIGILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQILKSIGCCKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
P AL T VQ WL QL +EL ERL D +N R+A L + D R
Sbjct: 326 PAKVALTTQEQVQWWLLQLAQELEERLIKDRNENDRVATQLAVSLRV----QGDRRLSSL 381
Query: 185 SKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L Y K+ D F A +R + S G++ + S +T L +SA+K
Sbjct: 382 RRCCALTCYDAHKMSHDAF----AVIRNYNVS-GIQNEWSP----PLTMLFLSATKFSAS 432
Query: 244 LSGTCSIMKYF 254
+C+ + F
Sbjct: 433 TPSSCTDITNF 443
>gi|307103424|gb|EFN51684.1| hypothetical protein CHLNCDRAFT_139920 [Chlorella variabilis]
Length = 720
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 149/263 (56%), Gaps = 25/263 (9%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E ++CSAG+AH+K++AKL SG++KPAQQT +P S+V LL LPI K+K LGGKLG +
Sbjct: 219 ELGYSCSAGVAHSKLMAKLCSGLHKPAQQTVLPASAVAALLGQLPIPKLKGLGGKLGERV 278
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELGV TVG L +L+ ++G WL +ARG + ++V+ R L KS G GK+F
Sbjct: 279 MSELGVETVGQLAAVPLSRLEAAFGEKEAQWLAALARGATDDKVEERRLAKSVGCGKTFR 338
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASA----FKSSDSDSRK 181
G +AL+ +A+V WL +L EL+ERL DL++N R A LT+ + +
Sbjct: 339 GRQALRDLAAVHKWLLELGGELAERLQEDLQENSREAKLLTVSFAPQLPWVATQQPGGTA 398
Query: 182 KF--------PSKSCPLRYGTAK-IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA 232
F ++SCPLR TA+ I ED L + E QG GW ++
Sbjct: 399 LFHAAPGYHATTRSCPLRKATAEAIAEDALALIKRWAAE---------QGQ---GWSLST 446
Query: 233 LSVSASKIVPVLSGTCSIMKYFN 255
+ V+AS V V S +I ++F
Sbjct: 447 MDVAASNFVAVQSAASAITRFFK 469
>gi|195022393|ref|XP_001985566.1| GH17135 [Drosophila grimshawi]
gi|193899048|gb|EDV97914.1| GH17135 [Drosophila grimshawi]
Length = 871
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 102/166 (61%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ET + CSAGIAHNK+LAKL +GMNKP +QT +P + + L D LP+ K+K LGGK G
Sbjct: 220 VKAETGYECSAGIAHNKILAKLVAGMNKPNKQTILPLAEIPALFDQLPVGKIKGLGGKFG 279
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ LG+ +G +LK++E +LQ +GTWL IA GI E V R KS G K
Sbjct: 280 ETVCETLGIKFLGHVLKYTEKELQRKLDEKSGTWLHQIACGIDLEAVTPRFYSKSIGCCK 339
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
FPG + + S+QHWL +L E+++RL D +N R A + +
Sbjct: 340 KFPGRNNITGLKSLQHWLGELASEMNDRLEKDFIENNRKAKQMVVQ 385
>gi|157817057|ref|NP_001101674.1| DNA polymerase eta [Rattus norvegicus]
gi|149069361|gb|EDM18802.1| polymerase (DNA directed), eta (RAD 30 related) (predicted) [Rattus
norvegicus]
Length = 689
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 142/255 (55%), Gaps = 14/255 (5%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 205 RKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGAS 264
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ + LGV +GDL +F+E +LQ +G G+WL+ + RGI E V+ R LPK+ G K+F
Sbjct: 265 VIDVLGVEYMGDLTQFTEAQLQSHFGEKNGSWLYAMCRGIEHEPVKPRQLPKTIGCSKNF 324
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T VQ WL QL EL ERL D N R+A L + + D R
Sbjct: 325 PGKTALATREQVQWWLLQLALELEERLTKDRTDNGRVATQLVVSIRV----EGDKRLSSL 380
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
+ C L RY K+ +D F A +R + GV+T+ S +T L + A+K
Sbjct: 381 RRCCALTRYDAHKMSQDAF----ATIRN-CNTSGVQTEWSP----PLTMLFLCATKFSAS 431
Query: 244 LSGTCSIMKYFNGPD 258
C+ + F D
Sbjct: 432 APPACTDITVFLSSD 446
>gi|157106621|ref|XP_001649408.1| DNA polymerase eta [Aedes aegypti]
gi|108879827|gb|EAT44052.1| AAEL004562-PA [Aedes aegypti]
Length = 852
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 135/246 (54%), Gaps = 12/246 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T + CSAGIAHNK+LAKL +G +KP +QT +P + + ++L +KK+K LGGKLG
Sbjct: 214 VKEKTGYECSAGIAHNKILAKLTAGFHKPNKQTILPLKCISKMYETLSLKKVKGLGGKLG 273
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ L + T+ +L KF E LQ + G+W++ +A+GI E V + KS G K
Sbjct: 274 DQVCELLKIQTMSELAKFPEKVLQNHFDDRMGSWMYLMAKGIDLEAVTPKFNSKSIGCCK 333
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-HASAFKSSDSDSRK 181
FPG A+ +A+++HWL +L E+ ERL DL++N R A +T+ +A F +D S
Sbjct: 334 RFPGKNAISGIATLKHWLGELANEIQERLEKDLDENNRTAKQMTVSYAQQFGQNDVSS-- 391
Query: 182 KFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
++S PL Y +I D + FL K+ S I L +SA K
Sbjct: 392 ---TRSVPLVGYNAERIAADALEAIKRNTDVFL-----KSDSSGALNKPIKFLGISAGKF 443
Query: 241 VPVLSG 246
+SG
Sbjct: 444 DDNVSG 449
>gi|301626020|ref|XP_002942198.1| PREDICTED: DNA polymerase eta-like [Xenopus (Silurana) tropicalis]
Length = 300
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 93/137 (67%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET F CSAGIAHNK+LAKLA G+NKP +QT + SV GL LPI K++ LGGKLG
Sbjct: 141 VEKETTFQCSAGIAHNKVLAKLACGLNKPNRQTILCQGSVPGLFSELPISKVRHLGGKLG 200
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
TS++ L V +G L +F+E LQ +G TG+WL+++ RGI E V+ R LPKS G K
Sbjct: 201 TSIRESLSVEYIGQLTQFTEQHLQNHFGEKTGSWLYSLCRGIEDEPVKPRQLPKSIGCSK 260
Query: 123 SFPGPRALKTVASVQHW 139
FPG AL T VQ+W
Sbjct: 261 IFPGKTALSTQEQVQYW 277
>gi|414884038|tpg|DAA60052.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 585
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 85/94 (90%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQLGGK
Sbjct: 271 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGK 330
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 94
LG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 331 LGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 364
>gi|328700741|ref|XP_001945230.2| PREDICTED: DNA polymerase eta-like [Acyrthosiphon pisum]
Length = 744
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 137/257 (53%), Gaps = 23/257 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGIA+NK+L+KLA G++KP QQT +P SSV L +++PIKK+K LGGKLG
Sbjct: 197 IFEQTGFRCSAGIANNKILSKLACGLHKPNQQTMLPPSSVPHLFETIPIKKVKNLGGKLG 256
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ E + DL + LQ+ + T +L+ I++GI E V++RL+PKS GS K
Sbjct: 257 ERIRQEFNCEFMSDLAAIPLNDLQQKFNDKTCNFLYQISKGIDNEPVESRLIPKSIGSCK 316
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
SFP LK ++ WLN L ++ ++L D E NKR A +T+ D + K
Sbjct: 317 SFPT--GLKVKEEIKQWLNTLMNDIVDKLKDDYEANKRKATLMTVSVRYL-----DKKTK 369
Query: 183 FPSKSC--PLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSAS 238
P+ C Y K+ + + S T+ W+ I+ L V+
Sbjct: 370 LPTSQCFEVTTYSHNKLLDTAY-----------SSLCTMTENQKSLQWKNPISFLGVAIG 418
Query: 239 KIVPVLSGTCSIMKYFN 255
+ V ++ SI YFN
Sbjct: 419 RFVE-MNVKSSIDNYFN 434
>gi|414884035|tpg|DAA60049.1| TPA: hypothetical protein ZEAMMB73_790613 [Zea mays]
Length = 378
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 85/94 (90%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQT VP SSV+ LL SLP+KKMKQLGGK
Sbjct: 64 VRVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSSVQDLLASLPVKKMKQLGGK 123
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 94
LG+SLQ++LGV T+GDLL F+E+KLQE YG NTG
Sbjct: 124 LGSSLQDDLGVETIGDLLSFTEEKLQEQYGVNTG 157
>gi|118763825|gb|AAI28367.1| Polh protein [Mus musculus]
Length = 556
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+
Sbjct: 68 KTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV 127
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
LG+ +GDL +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FP
Sbjct: 128 IEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFP 187
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 185
G AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 188 GKTALATREQVQWWLLQLALELEERLTKDRNDNDRVATQLVVSIRF----QGDRRLSSLR 243
Query: 186 KSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 244
+ C L RY K+ +D F A +R + G++T+ S +T L + A+K
Sbjct: 244 RCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFSAAA 294
Query: 245 SGTCSIMKYFNGPD 258
C+ + F D
Sbjct: 295 PPACTDITAFLSSD 308
>gi|17105328|ref|NP_109640.1| DNA polymerase eta [Mus musculus]
gi|59798431|sp|Q9JJN0.1|POLH_MOUSE RecName: Full=DNA polymerase eta; AltName: Full=RAD30 homolog A;
AltName: Full=Xeroderma pigmentosum variant type protein
homolog
gi|8918248|dbj|BAA97570.1| XPV [Mus musculus]
gi|26331290|dbj|BAC29375.1| unnamed protein product [Mus musculus]
gi|148691533|gb|EDL23480.1| polymerase (DNA directed), eta (RAD 30 related) [Mus musculus]
Length = 694
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+
Sbjct: 206 KTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV 265
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
LG+ +GDL +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FP
Sbjct: 266 IEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFP 325
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 185
G AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 326 GKTALATREQVQWWLLQLALELEERLTKDRNDNDRVATQLVVSIRF----QGDRRLSSLR 381
Query: 186 KSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 244
+ C L RY K+ +D F A +R + G++T+ S +T L + A+K
Sbjct: 382 RCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFSAAA 432
Query: 245 SGTCSIMKYFNGPD 258
C+ + F D
Sbjct: 433 PPACTDITAFLSSD 446
>gi|344259088|gb|EGW15192.1| DNA polymerase eta [Cricetulus griseus]
Length = 633
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 141 IERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 200
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPKS G K
Sbjct: 201 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKSIGCSK 260
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 261 NFPGKTALATRDQVQWWLLQLALELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 316
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L +Y K+ +D F A +R + G++T+ S +T L + A+K
Sbjct: 317 SLRRCCALTQYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFS 367
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 368 ASAPSSCTDITVF 380
>gi|354506314|ref|XP_003515209.1| PREDICTED: DNA polymerase eta [Cricetulus griseus]
Length = 695
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 141/253 (55%), Gaps = 14/253 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 203 IERKTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 262
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPKS G K
Sbjct: 263 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKSIGCSK 322
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 323 NFPGKTALATRDQVQWWLLQLALELEERLTKDRNDNDRVATQLAVSIRV----QGDKRLS 378
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L +Y K+ +D F A +R + G++T+ S +T L + A+K
Sbjct: 379 SLRRCCALTQYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFS 429
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 430 ASAPSSCTDITVF 442
>gi|149583604|ref|XP_001516192.1| PREDICTED: DNA polymerase eta [Ornithorhynchus anatinus]
Length = 729
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 122/206 (59%), Gaps = 5/206 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ K+T + CSAGI+HNK+LAKLA G+NKP +QT + V L D +PI K++ LGGKLG
Sbjct: 204 IEKDTGYQCSAGISHNKVLAKLACGLNKPNRQTLLSHGFVPELFDQMPIGKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ + LGV +G L F+E +LQ +G TG+WL+ + RGI + V+ R +P + G K
Sbjct: 264 ASITDNLGVEYMGQLTHFTESQLQSHFGEKTGSWLFAMCRGIEHDPVKPRQVPNTVGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL EL ERL D + N R+A L++ A D R
Sbjct: 324 NFPGKTALATEEQVQWWLLQLALELEERLNKDRDDNDRVATHLSVSARI----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQA 207
+ CPL RY K+ D L ++
Sbjct: 380 SLRRGCPLTRYDARKMSSDALALIRS 405
>gi|339234771|ref|XP_003378940.1| DNA polymerase eta [Trichinella spiralis]
gi|316978474|gb|EFV61459.1| DNA polymerase eta [Trichinella spiralis]
Length = 633
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 130/242 (53%), Gaps = 15/242 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ ++T F CSAGIA NKMLAKLA G+NKP QQT V SSV ++PI+K++ LGGKL
Sbjct: 186 QIFEKTNFYCSAGIAVNKMLAKLACGLNKPKQQTIVLPSSVAEFFSTVPIRKVRNLGGKL 245
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG---TWLWNIARGISGEEVQARLLPKSH 118
G + + T+ +L + L++ G T WL + GI + V R LPKS
Sbjct: 246 GYKITKHFEIETMRELANLNPSLLEKFVGEKTKLVLNWLLELCCGIDRDPVVIRQLPKSI 305
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 178
G K+FPG AL++V V+HW QL EEL ERL N RIA +LT+ + +++
Sbjct: 306 GCSKNFPGRNALRSVNDVRHWTRQLSEELEERL------NCRIAKSLTVGIRTEEKPENE 359
Query: 179 SRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSAS 238
+ ++ Y I +D F L Q EF + Q S + IT LS+SAS
Sbjct: 360 ANCHSSRQTFLRDYSAEVISQDAFGLIQ----EF--NTNSAKQSSIWLKPAITMLSMSAS 413
Query: 239 KI 240
+
Sbjct: 414 RF 415
>gi|297290923|ref|XP_002803805.1| PREDICTED: DNA polymerase eta-like [Macaca mulatta]
Length = 730
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 133/258 (51%), Gaps = 20/258 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V K F C ++LAKLA G+NKP +QT V SV L +PI+K++ LGGKL
Sbjct: 227 KVTKFLHFAC------FQVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKL 280
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G
Sbjct: 281 GASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCS 340
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 341 KNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV----QGDKRL 396
Query: 182 KFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
+ C L RY K+ D F + + + G++T+ S +T L + A+K
Sbjct: 397 SSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKF 447
Query: 241 VPVLSGTCSIMKYFNGPD 258
+C+ + F D
Sbjct: 448 SASAPSSCTDITSFLSSD 465
>gi|297713023|ref|XP_002833023.1| PREDICTED: DNA polymerase eta, partial [Pongo abelii]
Length = 492
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 127/240 (52%), Gaps = 14/240 (5%)
Query: 20 MLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79
+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+ LG+ +G+L +
Sbjct: 1 VLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQ 60
Query: 80 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHW 139
F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ W
Sbjct: 61 FTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWW 120
Query: 140 LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQ 198
L QL +EL ERL D N R+A L + D R + C L RY K+
Sbjct: 121 LLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLSSLRRCCALTRYDAHKMS 176
Query: 199 EDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYFNGPD 258
D F + + + G++T+ S +T L + A+K +C+ + F D
Sbjct: 177 HDAFTVIKN-----CNTSGIQTEWSP----PLTMLFLCATKFSASAPSSCTDITSFLSSD 227
>gi|308809351|ref|XP_003081985.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
gi|116060452|emb|CAL55788.1| Translesion DNA polymerase-REV1 deoxycytidyl transferase (ISS)
[Ostreococcus tauri]
Length = 595
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 15/238 (6%)
Query: 4 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 63
+ E +T SAGIA NKMLAKL SGMNKPA QT + + LL LPI +++ LG K G
Sbjct: 275 VDELGYTLSAGIATNKMLAKLTSGMNKPASQTVLCPDHTEALLAELPIDRIRGLGAKFGR 334
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 123
L L V T+G+L + KL+E G W+ ++ G + V+ R +PKS G+GK+
Sbjct: 335 ELVEGLDVKTIGELARTPIRKLEEICGEERAQWVRKVSLGQDDDPVKEREMPKSIGTGKT 394
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
F G A++++ S + WL +L EL++R D ++ R LTL S+ +++S
Sbjct: 395 FRGALAIRSLESAKKWLAELAAELNDRCEDDRDEWNREPKLLTLGLSSPDELNTNS--GH 452
Query: 184 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
S+ CP+R G +I +D L + S S W IT +SVSAS V
Sbjct: 453 CSRRCPMRLGADEITQDALAL-------------ISKWSSGRSDWSITGMSVSASNFV 497
>gi|355561734|gb|EHH18366.1| hypothetical protein EGK_14943 [Macaca mulatta]
Length = 690
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T EQN R+A L + D R
Sbjct: 326 PGKTALAT----------------------REQNDRVATQLAVSIRV----QGDKRLSSL 359
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 360 RRCCALTRYDAHKMSHDAFTVIK 382
>gi|355748582|gb|EHH53065.1| hypothetical protein EGM_13625 [Macaca fascicularis]
Length = 690
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S
Sbjct: 206 RETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRNLGGKLGAS 265
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+F
Sbjct: 266 VIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNF 325
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
PG AL T EQN R+A L + D R
Sbjct: 326 PGKTALAT----------------------REQNDRVATQLAVSIRV----QGDKRLSSL 359
Query: 185 SKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 360 RRCCALTRYDAHKMSHDAFTVIK 382
>gi|332030091|gb|EGI69916.1| DNA polymerase eta [Acromyrmex echinatior]
Length = 787
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 14 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTT 73
IA +LAKLA G++KP +QT +P ++V L +LP+KK++ LGGK G + LG
Sbjct: 187 AIAGIIILAKLACGLHKPNRQTILPEAAVSSLYSTLPVKKVRNLGGKFGDVVVESLGCKV 246
Query: 74 VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTV 133
+GDLL++S ++L++ + TG WL+NIARGI E V RLL KS G+ K FPG +A+ ++
Sbjct: 247 MGDLLQYSLEQLKKHFDEKTGFWLYNIARGIDDEPVTNRLLAKSIGACKKFPGKQAITSL 306
Query: 134 ASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL--HASAFKSSDSDSR 180
++HW L E+ ERL D +N+R A L + H +S+ S +R
Sbjct: 307 EVLKHWAGDLAAEVCERLEEDFIENQRRATLLVISYHYYHNRSTVSQTR 355
>gi|444725442|gb|ELW66006.1| DNA polymerase eta [Tupaia chinensis]
Length = 681
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 128/253 (50%), Gaps = 36/253 (14%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI K++ LGGKLG
Sbjct: 204 IERQTSFQCSAGISHNKVLAKLACGLNKPNRQTLVSLGSVPQLFSQMPICKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LGV +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPKS G K
Sbjct: 264 ASVIEILGVEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKSIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T EQN R+A L + D R
Sbjct: 324 NFPGKTALAT----------------------REQNDRVATQLAVSIRV----QGDKRLS 357
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ C L Y K+ D F A +R + G++T+ S +T L + A+K
Sbjct: 358 SLRRCCALSHYDAHKMSHDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFS 408
Query: 242 PVLSGTCSIMKYF 254
+C+ + F
Sbjct: 409 ACAPSSCTDITAF 421
>gi|47223238|emb|CAF98622.1| unnamed protein product [Tetraodon nigroviridis]
Length = 671
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 117/241 (48%), Gaps = 57/241 (23%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+T F CSAGI+HNK+LAKLA G+NKP +QT +P SV L SLPI K++
Sbjct: 212 VEKDTGFRCSAGISHNKVLAKLACGLNKPNRQTLLPLGSVGELFSSLPIGKIQ------- 264
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
WL+++ RG+ E V+ R LPKS G K
Sbjct: 265 ---------------------------------WLYDLCRGVDFEAVKPRQLPKSIGCSK 291
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG +L T VQ+WLNQL EL ERL D E N R+A LT+ D R
Sbjct: 292 NFPGKTSLATKEQVQYWLNQLALELEERLTKDREANGRVAKMLTVGVRQL----GDKRPS 347
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR--ITALSVSASK 239
S+ C L RY K+ D+F + ++ + T G H + W +T L +SA+K
Sbjct: 348 SFSRCCALVRYEATKLATDSFAIIRS----------LNTAGPHQATWTPPLTMLHLSATK 397
Query: 240 I 240
Sbjct: 398 F 398
>gi|324509837|gb|ADY44123.1| DNA polymerase eta [Ascaris suum]
Length = 602
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T+F+CSAGI NKM+AKL +KP QQT +P + + S I ++ LGGKL
Sbjct: 208 EIKEKTQFSCSAGIGSNKMIAKLICSRHKPGQQTIIPDEFIAEIFRSTRILSIRNLGGKL 267
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +L N + T+ +L S +L E + W++NIARGI E V+AR S
Sbjct: 268 GHALMNAFSIETMSELCGISMQQLSEHFSAQ-AKWIYNIARGIDDEPVRARDKQSSIAVS 326
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 175
K+FPG AL + + VQ WL+ L +EL++RL D +NKR A TLH S + +
Sbjct: 327 KNFPGSSALTSTSEVQTWLDGLVKELAKRLIDDQIKNKRTA--CTLHVSCTRDA 378
>gi|75756001|gb|ABA27055.1| TO87b-2 [Taraxacum officinale]
Length = 95
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 74/102 (72%), Gaps = 7/102 (6%)
Query: 148 SERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQA 207
SERL +D+E NKRIAHTLTLH +A+K D D+ KKFPSKSCPLRYG K+ ED NLF
Sbjct: 1 SERLHTDMETNKRIAHTLTLHVTAYKCGDRDTDKKFPSKSCPLRYGAGKVLEDAVNLFHC 60
Query: 208 GLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCS 249
GLRE++ Q S GWRIT LSVSASKIV + SGTCS
Sbjct: 61 GLREYMNH-----QSS--GGWRITGLSVSASKIVDIPSGTCS 95
>gi|302833114|ref|XP_002948121.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
gi|300266923|gb|EFJ51109.1| hypothetical protein VOLCADRAFT_116690 [Volvox carteri f.
nagariensis]
Length = 1251
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 132/274 (48%), Gaps = 35/274 (12%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+E ++CSAG+AH K++AKL SG++KP QQT V +V LL +LP+ K++ LG K G
Sbjct: 175 LLRELGYSCSAGVAHYKLMAKLGSGLHKPNQQTVVLARAVPTLLRNLPLAKLRSLGPKFG 234
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI-SGEEVQARLLPKSHGSG 121
+Q LG+ T+G+L +L+ YG L +A G+ G+ V RL PK+ G
Sbjct: 235 EQVQEGLGIQTLGELWSVPASRLESLYGPEAAAGLMRLAAGMDEGDMVSPRLAPKTLSCG 294
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL-------------- 167
K+F G AL+ + V L QL E+SER+ +D + R+ LTL
Sbjct: 295 KTFRGSSALQDIRQVSPRLMQLAAEMSERIEADRRDHGRLPTQLTLTLQTGAPGLAGAGA 354
Query: 168 ------HASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKT 220
+ + S+SC L R T I E L V+
Sbjct: 355 GEAAGGPGAGGGGAGGGGNGSTHSRSCRLARTSTECIAEVATGL-------------VRK 401
Query: 221 QGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 254
+ SGWRIT LS++ S+ SG ++ ++
Sbjct: 402 WAAERSGWRITGLSITTSRFDSAPSGPSTLARFL 435
>gi|312079328|ref|XP_003142126.1| hypothetical protein LOAG_06542 [Loa loa]
gi|307762710|gb|EFO21944.1| hypothetical protein LOAG_06542 [Loa loa]
Length = 545
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ K T F CSAGI +KM+AKL +KP QQT V ++ + + PI +++ LGGKLG
Sbjct: 211 IKKNTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEYTPINEVRNLGGKLG 270
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L + V T+G+L + S L E + W++NIARGI E+V AR S K
Sbjct: 271 RALVEKFDVKTMGELSQISMSDLSECFPAQ-AKWIYNIARGIDEEKVTARDKQSSVAVSK 329
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FPGP ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 330 NFPGPNALKTDGDVKFWLEGLIKELVKRLIDDQITNIRTASTLHI 374
>gi|298710336|emb|CBJ31954.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 644
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 100/173 (57%), Gaps = 3/173 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V +E FT SAGIA NK+LAKLAS +NKP +QT VP + +LD++P++ ++ LGGK
Sbjct: 193 LAVEQELGFTVSAGIASNKVLAKLASSINKPNKQTVVPAGASSDMLDTVPLRSVRGLGGK 252
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG ++ + DL +FS+ L ++G TG WLW RG+ E V L PKS
Sbjct: 253 LGETVVSWSKAEKASDLKRFSQQDLVGNFGTKTGEWLWRACRGMDDEPVAPNLKPKSLSV 312
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
KSF ++ SV +W+ LC ELS+R+ D E R A LTL + K
Sbjct: 313 CKSFT---PVRDEESVLNWMRLLCTELSQRIAVDREAWSRRATKLTLQMISLK 362
>gi|341901232|gb|EGT57167.1| CBN-POLH-1 protein [Caenorhabditis brenneri]
Length = 587
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L + PI ++ GGKL
Sbjct: 200 RIHEETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWVYVREILRTTPIGDVRGFGGKL 259
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +Q L +T +G++L+ L ES+ + +L IA+G+ E V+ R S
Sbjct: 260 GNRVQELLNITLMGEILEIDYSLLVESFP-DQHEYLIAIAQGMCDEPVRPRKESSSIAVS 318
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
K+FPG A++T+ ++ WL+ L +EL++RL +D +NKR A L
Sbjct: 319 KNFPGKLAIRTIQELRKWLDGLTKELAKRLWTDQNENKRTAENLV 363
>gi|256075427|ref|XP_002574021.1| DNA polymerase eta [Schistosoma mansoni]
gi|353229352|emb|CCD75523.1| putative DNA polymerase eta [Schistosoma mansoni]
Length = 400
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 97/167 (58%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +T F CSAGI NK +AKLA +NKP +QT +P S+ LL++ I K++ LGGKLG
Sbjct: 154 VFTKTGFKCSAGIGPNKSIAKLACSLNKPNKQTIIPQESIPILLENTHINKIRNLGGKLG 213
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+++ +L + T+G L L + +G T WL +++ GI E V R LPKS G K
Sbjct: 214 STVVKKLKIETLGQLSSIPLSVLTKEFGEKTSKWLHDLSHGIDHEVVTTRSLPKSVGCSK 273
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
+F G L + ++ WL L EE+ ERL D Q++R L L+A
Sbjct: 274 NFLGRATLTSSEQIKRWLLCLAEEIFERLDVDYHQHQRYPTRLILYA 320
>gi|170581390|ref|XP_001895662.1| ImpB/MucB/SamB family protein [Brugia malayi]
gi|158597305|gb|EDP35487.1| ImpB/MucB/SamB family protein [Brugia malayi]
Length = 500
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 93/165 (56%), Gaps = 1/165 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ K T F CSAGI +KM+AKL +KP QQT V ++ + + PI +++ LGGKLG
Sbjct: 159 IKKSTAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEYTPINEVRNLGGKLG 218
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L + + T+G+L + S L E Y W++NIA GI E+V AR S K
Sbjct: 219 RALMEKFNIKTMGELSEISMSHLSE-YFPAQAKWIYNIAHGIDDEKVTARDKQSSVAVSK 277
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FPG ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 278 NFPGANALKTDVDVKFWLEGLVKELVKRLIDDQIANIRTASTLHI 322
>gi|332234353|ref|XP_003266375.1| PREDICTED: DNA polymerase eta [Nomascus leucogenys]
Length = 723
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 126/267 (47%), Gaps = 28/267 (10%)
Query: 5 KETEFTCSAGIAHNKM------------LAKLASGMNKPAQQTTVPFSSVKGLLDSLPIK 52
+ET F CSAGI+HNK+ A + M ++ T + S I
Sbjct: 206 RETGFQCSAGISHNKIDNLTSPDLQLTVGAVIVEEMGAAIERETDIYDVTYQFFVSFVIS 265
Query: 53 KMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 112
+ LGGKLG S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R
Sbjct: 266 R--SLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPR 323
Query: 113 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
LPK+ G K+FPG AL T VQ WL QL +EL ERL D N R+A L +
Sbjct: 324 QLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLAVSIRV- 382
Query: 173 KSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRIT 231
D R + C L RY K+ D F + + + G++T+ S +T
Sbjct: 383 ---QGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKN-----CNTSGIQTEWSP----PLT 430
Query: 232 ALSVSASKIVPVLSGTCSIMKYFNGPD 258
L + A+K +C+ + F D
Sbjct: 431 MLFLCATKFSASAPSSCTDITSFLSSD 457
>gi|402588248|gb|EJW82181.1| ImpB/MucB/SamB family protein [Wuchereria bancrofti]
Length = 518
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 91/161 (56%), Gaps = 1/161 (0%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T F CSAGI +KM+AKL +KP QQT V ++ + + PI +++ LGGKLG +L
Sbjct: 215 TAFNCSAGIGSSKMIAKLVCSRHKPGQQTVVFNEAIPKVFEYTPINEVRNLGGKLGRALM 274
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ + T+G+L K S L E Y W++NIA GI E+V AR S K+FPG
Sbjct: 275 EKFDIKTMGELSKISMSHLSE-YFPAQAKWVYNIAHGIDEEKVTARDKQSSVAVSKNFPG 333
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
ALKT V+ WL L +EL +RL D N R A TL +
Sbjct: 334 VNALKTDVDVKFWLEGLVKELVKRLIDDQIANIRTASTLHI 374
>gi|115534089|ref|NP_497480.2| Protein POLH-1 [Caenorhabditis elegans]
gi|84570637|dbj|BAE72703.1| DNA polymerase eta [Caenorhabditis elegans]
gi|373218637|emb|CCD62153.1| Protein POLH-1 [Caenorhabditis elegans]
Length = 584
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 101/165 (61%), Gaps = 1/165 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L PI ++ GGK+
Sbjct: 202 QIHEETQFFCSAGVGNNKMMAKLVCARHKPRQQTLIPWFYVREILRLTPIGDVRGFGGKM 261
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +Q L +T +G+LL+ +L E++ N +L ++A G E V+ R S
Sbjct: 262 GNRIQEMLNITLMGELLEVDISQLIETFP-NQHEYLRSVAEGHCDEPVRPRKESSSIAVS 320
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
K+FPG ++++V ++ WL+ L +EL++RL +D +NKR A L
Sbjct: 321 KNFPGKLSIRSVLELKKWLDGLTKELAKRLATDQAENKRTAENLV 365
>gi|358060048|dbj|GAA94107.1| hypothetical protein E5Q_00754 [Mixia osmundae IAM 14324]
Length = 628
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 122/254 (48%), Gaps = 13/254 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + +TCSAGIA NKML+KL S KP QT + ++V L L +K++ LGGKL
Sbjct: 242 EVYTQLGYTCSAGIAKNKMLSKLCSAWKKPNAQTVLRDTAVHNFLKPLKFQKIRFLGGKL 301
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G SL NE +TVGDL S +LQ G +G W W I RGI EVQ + KS S
Sbjct: 302 GDSLANEYESSTVGDLWSVSLQELQRKLGNESGMWCWEIIRGIDLTEVQPKAATKSMLSS 361
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSR 180
K+F A+ A +WL EL+ RL E I T+TL+ F+ + SR
Sbjct: 362 KNFKP--AINKWADGAYWLRVSATELAARLNEQRESVPGIWPKTITLN---FRDINYVSR 416
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
SK C Y + F + + L+EF GS T+L ++ + +
Sbjct: 417 ----SKQCAFPYSNNLSADYVFKITERLLKEFQNEGSKPDDGSMTPA---TSLGLAFNGL 469
Query: 241 VPVLSGTCSIMKYF 254
V SG I +F
Sbjct: 470 ERVASGQAGIQDFF 483
>gi|412988027|emb|CCO19423.1| DNA polymerase eta [Bathycoccus prasinos]
Length = 741
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 117/233 (50%), Gaps = 13/233 (5%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+T S G++ NKMLAKL SGMNKP T + S LL+ LPI +++ LGG LG L
Sbjct: 322 YTLSCGVSSNKMLAKLTSGMNKPNCCTILEESFTPSLLEHLPIDRIRGLGGNLGEELSEV 381
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLW--NIARGISGEEVQARLLPKSHGSGKSFPG 126
LGVTT+G L K L + G + LW ARG+ + V+ R PKS + K+F G
Sbjct: 382 LGVTTIGGLAKADRKSLLMALGRDEKKTLWVQRAARGVDDDPVKERSAPKSIATSKTFRG 441
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
L+T V W+ +L EELSER D + +R TLTL + ++ S R
Sbjct: 442 AMCLETTDQVLKWIGELAEELSERTELDGQDWRRHPKTLTLGIRSNLTAHSAHR------ 495
Query: 187 SCPLRYGTAKIQEDTFNLFQAGL-REFLGSFGVKTQGSHYSGWRITALSVSAS 238
S PL Q D + ++FL +G+ G++ T LS++ S
Sbjct: 496 SHPLSGSGNDCQADNLKTLGGTIFKKFLAEWGIMNN----RGFQCTVLSLTTS 544
>gi|384246648|gb|EIE20137.1| DNA/RNA polymerase [Coccomyxa subellipsoidea C-169]
Length = 772
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 98/187 (52%), Gaps = 12/187 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + FTCSAGIA NK+LAK+AS MNKP QQT VP +V ++ LP+KK++ GGKLG
Sbjct: 181 VRDQLGFTCSAGIAANKLLAKVASAMNKPNQQTIVPPRAVDEMMRDLPLKKLRNFGGKLG 240
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +G T G + +L +G + RG S E VQ + L KS + K
Sbjct: 241 AELA-AMGCVTAGQVSALPHGQLTARFGEERAAGIARAVRGYSDEPVQVKELAKSMLAAK 299
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
SF A A + WL L +ELS RL D + R TL+L +++ S+ D
Sbjct: 300 SF---NATSAPAELDRWLRILADELSHRLTEDGLTHSRAPRTLSL---SYRGSNGDR--- 350
Query: 183 FPSKSCP 189
SK CP
Sbjct: 351 --SKCCP 355
>gi|398405964|ref|XP_003854448.1| hypothetical protein MYCGRDRAFT_11773, partial [Zymoseptoria
tritici IPO323]
gi|339474331|gb|EGP89424.1| hypothetical protein MYCGRDRAFT_11773 [Zymoseptoria tritici IPO323]
Length = 479
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 120/253 (47%), Gaps = 17/253 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + +T SAGIA NKMLAKL +G KP QT + V L SL KK++ LGG+LG
Sbjct: 240 VHSKLHYTASAGIASNKMLAKLGAGCKKPNNQTILRTRDVPEFLSSLKYKKIRGLGGQLG 299
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T+++ VTTV DLL S ++Q G + GTW++N+ RG EV R LP+S S K
Sbjct: 300 TAVEEAFNVTTVADLLPVSLKQMQTLLGADEGTWIYNVIRGREHSEVSTRKLPQSMLSQK 359
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCS-DLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F A+ + HWL EL +R+ + D +R TL ++
Sbjct: 360 TFTP--AIANIEKASHWLRMFAAELYDRVVALDTPTLRRRPRTLAVN------------H 405
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ P R A I T + A L L S ++ + W AL V S V
Sbjct: 406 HINGRFGPTRSRQATIS--TGSTMSADLIYELASSKLREISAEAVSWPCAALGVVLSNFV 463
Query: 242 PVLSGTCSIMKYF 254
+ + + SI +F
Sbjct: 464 ELDTQSLSITTFF 476
>gi|268571285|ref|XP_002640994.1| C. briggsae CBR-POLH-1 protein [Caenorhabditis briggsae]
Length = 608
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET+F CSAG+ +NKM+AKL +KP QQT +P+ + + +L + PI ++ GGK+
Sbjct: 202 RIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWRNCREILRTTPIGDVRGFGGKM 261
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +Q L +T +G++L+ L E++ + +L +A G+ E V+ R S
Sbjct: 262 GNRIQEMLNITLMGEILELDIALLIETFP-DQHEYLRAVAEGLDDEPVRPRKESSSIAVS 320
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
K+FPG A++T ++ W+ L +EL++RL +D +NKR A L
Sbjct: 321 KNFPGKMAIRTTGELKKWVGGLVKELAKRLGTDQAENKRTAENLV 365
>gi|328768045|gb|EGF78092.1| hypothetical protein BATDEDRAFT_26797 [Batrachochytrium
dendrobatidis JAM81]
Length = 604
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 8/189 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ E +TCS GIAH K+LAKL S +NKP +QT + V + ++ + K+ +GGK
Sbjct: 233 QIFDELGYTCSTGIAHGKILAKLVSSINKPNKQTVLQIEKVPDFMKTIKLSKINGMGGKF 292
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + VT +L +S D+L + G+ GTWL+N RGI +++Q + +S +
Sbjct: 293 GAEIMKTFQVTMAHELWVYSADELVKQLGYEHGTWLYNACRGIDFQKIQGQTKSQSMTAC 352
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+ + + ++WL L EL R+ ++ E N+R L LH F++ + + K
Sbjct: 353 KNLTP--NIHSTDDARYWLGILASELYTRVNTEFETNQRWPKLLVLH---FRNPNCPADK 407
Query: 182 KFPSKSCPL 190
SKSCP
Sbjct: 408 ---SKSCPF 413
>gi|388583788|gb|EIM24089.1| DNA/RNA polymerase [Wallemia sebi CBS 633.66]
Length = 584
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 13/257 (5%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGI+HNK+LAKL S KP QT + +V L + +K++ LGGK G +L
Sbjct: 238 YTCSAGISHNKILAKLCSAYKKPDDQTVLRRDAVDSFLGPMSFQKIRSLGGKFGEALAAH 297
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
TV DL K ++Q +G W++N RGI+ +EV+ R++ KS + KS P
Sbjct: 298 YDAATVSDLWKVPLGEMQRQFG-EESIWIYNTIRGINSDEVKERVITKSMLASKSLRPP- 355
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDL-EQNKRIA--HTLTLHASAFKSSDSDSRKKFPS 185
+ TV V+HWL L ELS+RL E+ K+ ++ L + S + FP
Sbjct: 356 -INTVGEVRHWLKILSSELSQRLKEVRGEEGKKTMWPKSIVLSMNQVYQSSRSHQGAFPY 414
Query: 186 KSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLS 245
+ +G IQ+ L L+EF+ + H G+ + L++S S + V +
Sbjct: 415 NNS---FGPELIQKHAEKL----LKEFVRCDTKEMPDEHKLGYDVNKLALSFSGLATVEA 467
Query: 246 GTCSIMKYFNGPDKFGS 262
G I + K G+
Sbjct: 468 GQRGIEGFLGQMTKNGN 484
>gi|378730434|gb|EHY56893.1| DNA polymerase eta subunit [Exophiala dermatitidis NIH/UT8656]
Length = 663
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 122/253 (48%), Gaps = 20/253 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++TCSAGIA NKM+AKL +G KP QQT V +V+ L K++ LGGKLG
Sbjct: 260 IYDRLKYTCSAGIARNKMMAKLGAGYKKPNQQTIVRNRAVQHFLSGFKFTKIRNLGGKLG 319
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ + G V +LL ++L+ G +TGTWL+ I RG EV +R KS S K
Sbjct: 320 DHVVDTFGTDEVTELLAIPIEQLKARLGDDTGTWLYGIIRGEDNSEVNSRTQIKSMLSAK 379
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ TV WL ++ RL + + +NKR T+TLH + +R
Sbjct: 380 SFRP--SINTVEQANRWLRIFVADIYARLVEEGVTENKRRPKTITLH----HRQGAQTR- 432
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
SK P+ G KI E+T LF+ + LG V + W LS+S
Sbjct: 433 ---SKQLPIPQGK-KIDENT--LFELA-KTLLGQVVVDGR-----AWPCANLSLSVGGFE 480
Query: 242 PVLSGTCSIMKYF 254
++G I +
Sbjct: 481 DGVAGNKGIDTFL 493
>gi|452842927|gb|EME44862.1| hypothetical protein DOTSEDRAFT_70800 [Dothistroma septosporum
NZE10]
Length = 628
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 108/209 (51%), Gaps = 11/209 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE ++TCSAG++ NKMLAKL SG KP QT + +V+ L K++ LGGKL
Sbjct: 193 RIFKELKYTCSAGLSRNKMLAKLGSGHKKPNAQTVIRNRAVQQFLSGFKFTKIRNLGGKL 252
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + TV +LL S ++L++ G +TG WL+ + RG EV R KS S
Sbjct: 253 GDEVVAAFNTDTVSELLPISIEQLKKQLGDSTGAWLYGVIRGEDDSEVNPRTQIKSMLSA 312
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF ++ +V WL ++ RL + + +NKR T+ LH + +R
Sbjct: 313 KSFRP--SINSVDVASKWLRIFVADIFSRLVEEGVLENKRRPKTINLH----HRQGAQTR 366
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGL 209
SKS P+ G +E FNL +A L
Sbjct: 367 ----SKSAPIPLGKGITEEVLFNLAKALL 391
>gi|449017709|dbj|BAM81111.1| similar to DNA-damage-inducible protein P [Cyanidioschyzon merolae
strain 10D]
Length = 516
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 118/259 (45%), Gaps = 16/259 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L E +TCSAG+A NKMLAK AS NKP + T +P+S +L +P+ +++ LGGK G
Sbjct: 171 ILDELRYTCSAGVACNKMLAKFASSTNKPNKLTAIPWSETNSILARIPLSRVRGLGGKFG 230
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ T+ DL + S LQ +Y T WL+ +ARG V+ R P+S + K
Sbjct: 231 AELQRNFKAETLADLSQLSMAALQAAYEPCTAEWLFWLARGYDPSRVEPRDRPRSLLAAK 290
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
SF + T + L L L +R+ D + R TL + ++ ++ R
Sbjct: 291 SFA---PVDTWQDARRILFLLATRLEQRIERDTSMHHRRPRTLCVSFTSAQAGLQGQRHH 347
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITA--LSVSASKI 240
S+S P +ED G + L S SG+R + A+
Sbjct: 348 HASRSGPF---PTCAKEDAAASIAEGAEKLLRSI--------RSGFRFPCKRFMLEATNF 396
Query: 241 VPVLSGTCSIMKYFNGPDK 259
P+ SG SI Y P K
Sbjct: 397 QPIASGAYSIRSYMGKPGK 415
>gi|298709408|emb|CBJ49221.1| translesion synthesis DNA polymerase eta splice variant [Ectocarpus
siliculosus]
Length = 838
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 97/173 (56%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V E ++C+AG+AHNK+LAKL S M+KP QT +P V+ + +LP+++++ GGK G
Sbjct: 309 VRSELGYSCTAGVAHNKLLAKLCSNMHKPNAQTVLPLDKVEVVFHTLPVERVRGWGGKFG 368
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +LGV+T G++ +LQ G G W + I + V AR PKS G K
Sbjct: 369 VKMMEKLGVSTAGEVAAVGAAELQRVLGDEEGWRAWEKSNAICRDPVNARSAPKSVGCSK 428
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 175
+FPG L + + ++ WL++L +EL RL E + LT+ +A + +
Sbjct: 429 TFPGKTKLTSFSEIERWLSELSKELISRLVEQQEGEGQTPSKLTVSFAALQQA 481
>gi|308480033|ref|XP_003102224.1| CRE-POLH-1 protein [Caenorhabditis remanei]
gi|308262150|gb|EFP06103.1| CRE-POLH-1 protein [Caenorhabditis remanei]
Length = 602
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 95/165 (57%), Gaps = 1/165 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET+F CSAG+ +NKM+AKL +KP QQT +P+ V+ +L PI ++ GGK
Sbjct: 202 RIRDETQFYCSAGVGNNKMMAKLVCARHKPRQQTLIPWKYVREILRLTPIGDVRGFGGKF 261
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +Q L ++ +G++L+ L E++ + +L +A G+ E V+ R S
Sbjct: 262 GNRVQEMLNISLMGEILEIEWHLLIEAFP-DQHEYLRAVAEGLDDEPVRPRRESSSIAVS 320
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
K+FPG A++T ++ W+ L +EL++RL D +NKR A L
Sbjct: 321 KNFPGKSAIRTTREMRKWVEGLVKELAKRLVVDQVENKRTAENLV 365
>gi|320169035|gb|EFW45934.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 893
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 20/222 (9%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL + +F CSAGIA NKMLAKLAS +NKP +QTTV + L+ SLP++K++ LGGKLG
Sbjct: 475 VLNQLDFHCSAGIAENKMLAKLASSLNKPNKQTTVTSTGAIALMRSLPLRKIRGLGGKLG 534
Query: 63 TSLQNELG-VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG + G++ F +L G +TG +++ RG V R KS +
Sbjct: 535 REVCKRLGDIELAGEVWSFPLSRLVSLLGSDTGPFVYAAVRGRDSSAVVPRSTTKSMLAA 594
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
KSF ++T S+ WL L EL R+ +D KR+ TL + F + + R
Sbjct: 595 KSFSP--VVETYQSLLDWLRVLASELVLRMRAD----KRVPRTLKVQ---FHRASPNGRA 645
Query: 182 -------KFPSKSCPL---RYGTAKIQEDTFNLFQAGLREFL 213
+ S+SCPL R+ + + L + RE L
Sbjct: 646 NSHAWWLEGKSRSCPLPHDRFNAELLASTAYGLLPSDAREIL 687
>gi|212534508|ref|XP_002147410.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
gi|210069809|gb|EEA23899.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
marneffei ATCC 18224]
Length = 673
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM++KL S NKP +QT + +++ L K++ LGGKLG + E
Sbjct: 274 YTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQKFLGGFQFTKIRWLGGKLGERISAE 333
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V +LL S D+ + +T W++NI RG+ EV R KS S KSF
Sbjct: 334 FGTEEVKELLNVSLDQFKAKLDDDTAVWVYNIIRGVDDSEVNPRTQIKSMLSAKSFRP-- 391
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + + WL +L RL D L +NKR TL+LH
Sbjct: 392 SINSADQARKWLRIFAADLYNRLVEDGLLENKRRPTTLSLH 432
>gi|428181880|gb|EKX50742.1| hypothetical protein GUITHDRAFT_39857, partial [Guillardia theta
CCMP2712]
Length = 334
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 84/126 (66%), Gaps = 5/126 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGG-KL 61
VL+ET FTCSAGI+HNK+LAKL SG++KP QQT +P + + L+ LPI +++ LGG KL
Sbjct: 209 VLEETSFTCSAGISHNKILAKLGSGLHKPNQQTILPTEAAQKLMQDLPISRLRGLGGEKL 268
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT----GTWLWNIARGISGEEVQARLLPKS 117
G ++Q E V TVG+L K L +G + G W++ IA+GI + V+ + L KS
Sbjct: 269 GKAIQEEFHVETVGELQKIPCPLLVSKFGDSPKPPGGLWVYRIAKGICLQPVKDQELAKS 328
Query: 118 HGSGKS 123
GSGKS
Sbjct: 329 RGSGKS 334
>gi|225683428|gb|EEH21712.1| sister chromatid cohesion protein Eso1 [Paracoccidioides
brasiliensis Pb03]
Length = 681
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 22/258 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAGIA NKM+AKL S NKP +QT V +++ L +++ LGGKLG
Sbjct: 261 IWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLG 320
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS S K
Sbjct: 321 KQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKSMLSTK 380
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
SF PG +K+ + WL ++ RL + + +NKR +T+H ++
Sbjct: 381 SFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR--------TK 429
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
+ S+ P+ G F+L + L + + + W LS++ S
Sbjct: 430 GQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSLNVSGF 480
Query: 241 VPVLSGTCSIMKYFNGPD 258
L+G S+ +F D
Sbjct: 481 EDGLTGNRSLDSFFGRGD 498
>gi|429862856|gb|ELA37463.1| sister chromatid cohesion protein eso1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 656
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 89/168 (52%), Gaps = 3/168 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVL++ +TCSAG+A NK+L+KL SG KP QQT + +V L KM+ LGGKL
Sbjct: 248 QVLEKLFYTCSAGVAKNKLLSKLGSGHKKPNQQTVIRNRAVDQFLSGFKFTKMRNLGGKL 307
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ V +LL D+++ G TGTW++N RGI EV +R KS S
Sbjct: 308 GENVVTTFNTDAVSELLPILLDQMKAKLGHETGTWVYNTIRGIDNSEVNSRTQIKSMLSA 367
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF + T WL ++ RL + + +NKR T+ LH
Sbjct: 368 KSFRP--YINTPEKAVRWLRIFVADIFARLVEEGVLENKRRPRTINLH 413
>gi|407921870|gb|EKG15007.1| DNA-repair protein UmuC-like protein [Macrophomina phaseolina MS6]
Length = 591
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 92/168 (54%), Gaps = 4/168 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E ++TCSAG+A NKMLAKL SG KP QQT + +V+ L + K++ LGGKL
Sbjct: 121 KIFEELKYTCSAGVARNKMLAKLGSGHQKPNQQTVIRNRAVQNFLSEMKFTKIRNLGGKL 180
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + TV DLL ++LQ G TG WL++I RG EV +RL KS S
Sbjct: 181 GDEVVAMFNTETVKDLLDVPLEQLQR-LGDGTGIWLYDIIRGNDTSEVNSRLKIKSMLSA 239
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF ++ T WL ++ R + + +NKR T+TLH
Sbjct: 240 KSFRP--SINTFEQGIRWLRIFSADIFSRCVEEGVLENKRRPKTITLH 285
>gi|367021894|ref|XP_003660232.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
gi|347007499|gb|AEO54987.1| hypothetical protein MYCTH_2298274 [Myceliophthora thermophila ATCC
42464]
Length = 577
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 87/162 (53%), Gaps = 5/162 (3%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TC+AGIA NK+L+KL S KP QQT + +V+ L K + LGGKLG + E
Sbjct: 166 YTCAAGIARNKLLSKLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGKLGEQVTRE 225
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGP 127
G +V +LL S ++L+ G TG W++N RGI EV R KS S KSF PG
Sbjct: 226 FGSESVPELLSVSVEQLKLKLGDETGVWVYNTLRGIDTSEVNPRTQIKSMFSAKSFRPG- 284
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
+ TV WL ++ RL + + +NKR T+ LH
Sbjct: 285 --ISTVEQATKWLRIFVADIFARLVEEGVLENKRRPRTINLH 324
>gi|291244467|ref|XP_002742117.1| PREDICTED: DNA-directed DNA polymerase eta-like, partial
[Saccoglossus kowalevskii]
Length = 289
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 69/92 (75%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++TEF CSAG++HNK+LAKLA G+NKP +QT +PF SV+ L +P+ K++ LGGKLG
Sbjct: 198 VYQKTEFRCSAGVSHNKILAKLACGINKPNKQTVLPFESVEKLFKLIPVNKVRHLGGKLG 257
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 94
LQ+ELG+ +GD+ KF+E +LQ G TG
Sbjct: 258 QQLQDELGMQYMGDICKFTEKELQIKLGDKTG 289
>gi|295666590|ref|XP_002793845.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277498|gb|EEH33064.1| DNA polymerase eta [Paracoccidioides sp. 'lutzii' Pb01]
Length = 664
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 20/257 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAGIA NKM+AKL S NKP +QT V +++ L +++ LGGKLG
Sbjct: 260 IWERLKYTCSAGIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLG 319
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS S K
Sbjct: 320 KQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSTRTKIKSMLSTK 379
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++K+ + WL ++ RL + + +NKR +T+H ++
Sbjct: 380 SFRP--SIKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR--------TKG 429
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ S+ P+ G F+L + L + + + W LS++ S
Sbjct: 430 QTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSLNVSGFE 480
Query: 242 PVLSGTCSIMKYFNGPD 258
L+G S+ +F D
Sbjct: 481 DGLTGNRSLDSFFGRGD 497
>gi|226287048|gb|EEH42561.1| DNA polymerase eta [Paracoccidioides brasiliensis Pb18]
Length = 675
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 122/258 (47%), Gaps = 22/258 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSA IA NKM+AKL S NKP +QT V +++ L +++ LGGKLG
Sbjct: 257 IWERLKYTCSAAIARNKMMAKLGSSCNKPNKQTIVRNRAIQHFLSGFRFTQIRMLGGKLG 316
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VGDLL+ ++L+ G +TGTWL+ I RG EV R KS S K
Sbjct: 317 KQVSATFGTEEVGDLLRIPIEQLKLKLGDDTGTWLYEIIRGYEYSEVSMRTKIKSMLSTK 376
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
SF PG +K+ + WL ++ RL + + +NKR +T+H ++
Sbjct: 377 SFRPG---IKSSGQAEKWLRIFVADIYGRLLEEGVLENKRRPKVVTIHHR--------TK 425
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
+ S+ P+ G F+L + L + + + W LS++ S
Sbjct: 426 GQTRSRQIPIPPGRPMSDTMLFDLAKTLLAQVVNEGNI---------WPCANLSLNVSGF 476
Query: 241 VPVLSGTCSIMKYFNGPD 258
L+G S+ +F D
Sbjct: 477 EDGLTGNRSLDSFFGRGD 494
>gi|296419283|ref|XP_002839244.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635259|emb|CAZ83435.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 88/168 (52%), Gaps = 5/168 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KE +TCSAGIA NK+LAKL SG KP QQT V + + L++ K++ LGGKLG
Sbjct: 231 VRKELGYTCSAGIAQNKLLAKLGSGYKKPNQQTIVRIRAAQRFLNTFKFTKLRNLGGKLG 290
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ E G + LL LQ +T TW++NI RGI EV R L KS S K
Sbjct: 291 ERISEEFGTEELSSLLDTPLQALQLKLNDDTATWVYNIIRGIDKSEVNPRTLIKSMLSAK 350
Query: 123 SFPGPRALKTVASV-QHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF R T A WL ++ R+ + + + KR T+TL+
Sbjct: 351 SF---RPYITTADAGSKWLTIFISDIYSRMEEEGVMEGKRRPKTMTLN 395
>gi|406861269|gb|EKD14324.1| impB/mucB/samB family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 717
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 104/215 (48%), Gaps = 15/215 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++TCS G+A NKMLAKL S KP QQT + +++ L K++ GGK+G
Sbjct: 252 VRTHLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIIRNRAIQQFLSEFKFTKIRGFGGKMG 311
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ TV DLL D+L++ G +TGTW++ I RG EV +R KS S K
Sbjct: 312 DSITAAFNTDTVQDLLAVPIDQLKQKLGDDTGTWVYEIIRGKESSEVNSRTAIKSMLSAK 371
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ T WL ++ RL + + +NKR T+ LH S
Sbjct: 372 SFRP--SINTAEQANRWLRIFAADIYSRLVEEGVLENKRRPKTINLHHR--------SGG 421
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSF 216
+ S+S P+ G KI D LF+ R LG
Sbjct: 422 QTKSRSSPISLGK-KI--DEVGLFELA-RSLLGQL 452
>gi|392574155|gb|EIW67292.1| hypothetical protein TREMEDRAFT_12962, partial [Tremella
mesenterica DSM 1558]
Length = 645
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 84/150 (56%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V K +TCSAGIAHNK +AKL S KP QT + ++ L ++ ++ LGGKL
Sbjct: 231 EVYKRLHYTCSAGIAHNKAMAKLCSAWKKPNNQTVLRIAATPAFLRNMDFTDIRFLGGKL 290
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ E G TVGD+L D+LQ +G W++NI RGI EV+ R+ KS +
Sbjct: 291 GNAIATEYGAKTVGDMLTVPLDELQRRFG-EESVWVYNIIRGIDHTEVKERVTTKSMLAS 349
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
K+ A+ T A HW+ L EL+ RL
Sbjct: 350 KNTRP--AVTTPAQGLHWIQVLSGELNVRL 377
>gi|310794025|gb|EFQ29486.1| impB/mucB/samB family protein [Glomerella graminicola M1.001]
Length = 637
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 3/168 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+L+ ++TCSAGIA NK+L+KL SG KP QQT + +V L K++ LGGKL
Sbjct: 248 QILERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNRAVTHFLSGFKFTKIRNLGGKL 307
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ + V +LL D+++ G +TG W+++ RGI EV +R KS S
Sbjct: 308 GENVVSTFNTDAVRELLDIPLDQMKAKLGHDTGNWVYDTIRGIDTSEVNSRTQIKSMLSA 367
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF + T WL ++ RL + + +NKR T+ LH
Sbjct: 368 KSFRP--YINTPEQAIRWLRIFAADIFARLIEEGVLENKRRPRTINLH 413
>gi|346977255|gb|EGY20707.1| sister chromatid cohesion protein Eso1 [Verticillium dahliae
VdLs.17]
Length = 660
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+TCSAGIA+NKML+KL S KP QQT + +++ L K++ LGGKLG ++ N
Sbjct: 255 HYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLGDTIVN 314
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
TV DLL D+++ G TG W++N RGI EV +R KS S KSF
Sbjct: 315 TFNTDTVKDLLPTPLDQMKARLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSFRP- 373
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ T WL ++ RL + + +NKR T+ LH
Sbjct: 374 -SIHTPDQGNRWLRIFVADIFSRLVEEGVLENKRRPKTINLH 414
>gi|302419901|ref|XP_003007781.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
gi|261353432|gb|EEY15860.1| DNA polymerase IV [Verticillium albo-atrum VaMs.102]
Length = 631
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+TCSAGIA+NKML+KL S KP QQT + +V+ L K++ LGGKLG ++ N
Sbjct: 226 HYTCSAGIANNKMLSKLGSAHKKPNQQTVIRNRAVQQFLSDFKFTKIRNLGGKLGDTIVN 285
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
TV DLL D+++ G TG W++N RGI EV +R KS S KSF
Sbjct: 286 TFNTDTVKDLLPTPLDQMKARLGDETGIWVYNTIRGIDQSEVNSRTQIKSMLSAKSFRP- 344
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ T WL ++ RL + + +NKR T+ LH
Sbjct: 345 -SIHTPDQGNRWLRIFVADIFSRLVEEGVLENKRRPKTINLH 385
>gi|336264622|ref|XP_003347087.1| hypothetical protein SMAC_05386 [Sordaria macrospora k-hell]
gi|380093781|emb|CCC08745.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 672
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAG+A NK+L+KL S KP QQT + SV+ L KM+ LGGKLG +
Sbjct: 259 YTCSAGVACNKLLSKLGSAYRKPNQQTVIRNRSVQHFLSDFKFTKMRNLGGKLGEQISQI 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
TV DLL S ++L+ G +TG W++N RGI EV R+ KS S KSF
Sbjct: 319 YHTDTVKDLLGVSVEQLKSKLGDDTGVWVYNTVRGIDNSEVNPRVQIKSMLSAKSFRP-- 376
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ T WL ++ RL + + +NKR T+ LH
Sbjct: 377 SIATFEQGVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|121713084|ref|XP_001274153.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
gi|119402306|gb|EAW12727.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
clavatus NRRL 1]
Length = 674
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS G+A NKM+AKL S NKP +QT V +V+ L K++ LGGKLG
Sbjct: 273 VWDKLKYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAVQNFLGGYKFTKIRMLGGKLG 332
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DLLK S ++L+ +T +WL+ I RG EV R KS S K
Sbjct: 333 DQITASFGTEQVSDLLKVSHEQLRAKLDDDTASWLYGIIRGEDKSEVNPRTQIKSMLSAK 392
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ +V + WL ++ RL + + +N+R T++LH
Sbjct: 393 SFRP--SINSVDQAEKWLRIFAADIYGRLVEEGVLENRRRPRTVSLH 437
>gi|367041902|ref|XP_003651331.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
gi|346998593|gb|AEO64995.1| hypothetical protein THITE_2111461 [Thielavia terrestris NRRL 8126]
Length = 642
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 119/254 (46%), Gaps = 22/254 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + +TC+AGIA NK+L+KL S KP QQT + +V+ L K + LGGKLG
Sbjct: 227 IRDKLRYTCAAGIARNKLLSKLGSAHRKPNQQTVIRNRAVRKFLSGFKFTKFRNLGGKLG 286
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +V +LL S ++L+ G TGTW++N RGI EV +R KS S K
Sbjct: 287 EHVSQVFNTESVQELLSVSLEQLKLRLGDETGTWVYNTLRGIDTSEVNSRTQIKSMLSAK 346
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
SF PG + TV WL ++ RL + + ++KR T+ LH S +R
Sbjct: 347 SFRPG---INTVEQATRWLKIFAADIFARLVEEGVLEHKRRPKTINLH----HRHGSQTR 399
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
S+ P+ G + E F L ++ L + + Q H W + LS+S
Sbjct: 400 ----SRQSPIPQGRSLDAETLFRLAKSLLHQIV-------QEGHV--WPCSNLSLSVGGF 446
Query: 241 VPVLSGTCSIMKYF 254
+SG I +
Sbjct: 447 EDGISGNMGIAGFL 460
>gi|353235092|emb|CCA67110.1| related to DNA polymerase eta [Piriformospora indica DSM 11827]
Length = 615
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 131/264 (49%), Gaps = 18/264 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+T SAGIA NK LAKL + KP Q+ + +++ L LP +K++ LGGKLGT L E
Sbjct: 263 YTTSAGIARNKFLAKLVASYKKPNSQSVLRNAAIPNYLRPLPFQKIRFLGGKLGTILAEE 322
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGP 127
TVG+LL ++Q +G + W++ + RGI EV+ + + KS + K+ P P
Sbjct: 323 YEAKTVGELLYIDLAEMQRKFGPES-LWVYQVFRGIDIGEVKEKPPVNKSMLASKNLPKP 381
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
++ V W+ LC EL+ RL E T+ LH ++ DS S+ SK
Sbjct: 382 --IRQDGDVLQWVRVLCSELAVRLLEARETGTVWPKTIALHTK--QAGDSASK----SKQ 433
Query: 188 CPLRYGTAKIQEDTFNLFQAGL----REFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
P + +++ T ++ A + +E S + + +I ++VS + + +
Sbjct: 434 TPFPF----VRDLTGDVIVAAVMKLWKELHTSDAERAANPNVPKMKIINIAVSFNGVETL 489
Query: 244 LSGTCSIMKYFNGPDKFGSTSEQL 267
G +I +F GP G++S +L
Sbjct: 490 EQGQRNIAGFFGGPASKGASSSKL 513
>gi|409048993|gb|EKM58471.1| hypothetical protein PHACADRAFT_140428 [Phanerochaete carnosa
HHB-10118-sp]
Length = 629
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 122/252 (48%), Gaps = 19/252 (7%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
++ SAGI+ NK LAKL + KP Q+ + +++ L +P +K++ LGGKLG +L E
Sbjct: 285 YSTSAGISRNKFLAKLTASYKKPNNQSILRNAAIPNYLRPMPFQKIRFLGGKLGKALAEE 344
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGP 127
V+TV DLL + D++Q +G W+W I RG+ EV+ + + KS + K+ P P
Sbjct: 345 YDVSTVSDLLTVNLDEIQRKFG-EESIWVWEILRGVDRTEVKEKPPITKSMLASKNLPQP 403
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSK 186
+ T + HW+ L EL+ RL E + +L LH + F SK
Sbjct: 404 --IVTASQGHHWIRVLAAELALRLREARESIPALWPKSLVLHV-------QQGHEAFRSK 454
Query: 187 SCPLRYGTAKIQEDTFNLFQAGL-REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLS 245
P + T +I D L +E +G T S + +IT + +S S IV +
Sbjct: 455 QAPFSF-TREITVDVIATAGDKLWKELVG-----TDTSRKAPMKITHIQLSFSGIVSTET 508
Query: 246 GTCSIMKYFNGP 257
G I +F P
Sbjct: 509 GQRRIEGFFQKP 520
>gi|440634992|gb|ELR04911.1| hypothetical protein GMDG_00170 [Geomyces destructans 20631-21]
Length = 641
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 91/167 (54%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ ++TCS GIAHNKML+KL S KP QQT + +++ L K++ LGGKLG
Sbjct: 249 VSEQLKYTCSGGIAHNKMLSKLGSAHRKPNQQTVIRNRAIQQFLSDFKFTKIRNLGGKLG 308
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T + + TV LL+ ++L++ G TG+W++ RGI EV +R KS S K
Sbjct: 309 TQIVDTFETDTVSGLLEVPVERLKQKLGDETGSWVYQTIRGIDQSEVNSRTQIKSMLSAK 368
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 369 SFQP--SINSREQASRWLRIFVGDIYARLVEEGVLENKRRPKTINLH 413
>gi|358393445|gb|EHK42846.1| hypothetical protein TRIATDRAFT_33108 [Trichoderma atroviride IMI
206040]
Length = 662
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 119/260 (45%), Gaps = 22/260 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV ++ +TCSAGIA+NK+++KL S KP +QT V +V L + + KM+ LGGKL
Sbjct: 246 QVREKLGYTCSAGIANNKLVSKLGSAFKKPNEQTVVRNRAVMLFLTEIKVTKMRNLGGKL 305
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + G ++ +L ++ + G T W +N RGI EV +R KS S
Sbjct: 306 GDQVVSTFGTESIKELRDIPLEQFKAKLGEETAIWFYNTIRGIDHSEVNSRTQIKSMLSA 365
Query: 122 KSFPGPRAL-KTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDS 179
KSF R L K+ WL ++ RL + + ++KR T+ LH +
Sbjct: 366 KSF---RPLIKSSEQATKWLRIFAGDIYSRLVEEGILEHKRWPRTINLHHRHAGQTR--- 419
Query: 180 RKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASK 239
S+ CP+ G ++ F L + L + + G W T LS+S S
Sbjct: 420 -----SRGCPIPTGKPLDEQALFILCKELLNQIVAEGG---------AWPCTNLSLSVSG 465
Query: 240 IVPVLSGTCSIMKYFNGPDK 259
+ G I +F D+
Sbjct: 466 FEEGVKGNMGIGAFFKKRDE 485
>gi|402224670|gb|EJU04732.1| DNA/RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 604
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V K+ +T SAGIA NK +AKL + KP QT + +++ L+ +P KK++ LGGKL
Sbjct: 243 EVHKQLGYTTSAGIARNKTMAKLCASCKKPFGQTVLRDAAIPLYLNPMPFKKIRFLGGKL 302
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G +L + T+GDLL S++ +Q+ +G W+++I RG EV+ R KS +
Sbjct: 303 GDALASAYDAKTIGDLLSVSKEDMQQQFG-EESYWVYDILRGRDYAEVKERTGVKSMMAS 361
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSR 180
K+ A+KT + QHWL L ELS RL + + + TL LH K R
Sbjct: 362 KNVRP--AIKTFSDGQHWLRVLSAELSLRLEEARDLSPAVWPKTLVLH---IKQGFDAPR 416
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 214
S+ CP + A E L + LRE +G
Sbjct: 417 ----SRQCPFPFTNALSDEYIARLGERLLRELVG 446
>gi|452822562|gb|EME29580.1| DNA polymerase eta subunit [Galdieria sulphuraria]
Length = 546
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 3/183 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + +T SAGIA NK+LAKL S +NKP +QT + +V LL++LP+KK++ LGGKLG
Sbjct: 219 IYSQFNYTSSAGIAENKLLAKLGSSLNKPNRQTLISPKAVPFLLENLPLKKLRGLGGKLG 278
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T ++ T + + +K E G W++N+ RGI V AR + KS + K
Sbjct: 279 TRIEERTNAKTAKEAQNVTLEKWNEIVGRENAEWIYNLVRGIDYSPVNARGITKSILAAK 338
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
SF +A + ++ W+ L EL ERL D N R +H S+ S S
Sbjct: 339 SF---KAECSWEGMEKWIKILAYELCERLRKDETMNSRRPINFIVHYSSVGSVSSSKSIP 395
Query: 183 FPS 185
FP+
Sbjct: 396 FPN 398
>gi|85111821|ref|XP_964120.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
gi|28925887|gb|EAA34884.1| hypothetical protein NCU01936 [Neurospora crassa OR74A]
Length = 672
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAG+A NK+L+KL S KP QQT + S++ L KM+ LGGKLG +
Sbjct: 259 YTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
TV DLL S ++L+ G +TG W++N RGI EV R+ KS S KSF
Sbjct: 319 FHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSFRP-- 376
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ RL + + +NKR T+ LH
Sbjct: 377 SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|115400311|ref|XP_001215744.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114191410|gb|EAU33110.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1077
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
++TCSAGIA NKM+AKL S NKP +QT V +V+ L K++ LGGKLG +
Sbjct: 689 QYTCSAGIARNKMMAKLGSSSNKPNKQTIVRNRAVQNFLGGFKFTKIRMLGGKLGDQVTA 748
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
G VGDLL+ ++L+ +T WL+ I RG EV R KS S KSF
Sbjct: 749 LFGTEQVGDLLQVPLEQLRAKLDDDTALWLYGIIRGEDRSEVNPRTQIKSMLSAKSFRP- 807
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ +V + WL ++ RL D + +N+R T+ LH
Sbjct: 808 -SINSVEQAEKWLRIFAADIYGRLVEDGVLENRRRPRTIALH 848
>gi|336463579|gb|EGO51819.1| hypothetical protein NEUTE1DRAFT_149518 [Neurospora tetrasperma
FGSC 2508]
Length = 672
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAG+A NK+L+KL S KP QQT + S++ L KM+ LGGKLG +
Sbjct: 259 YTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
TV DLL S ++L+ G +TG W++N RGI EV R+ KS S KSF
Sbjct: 319 FHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVHIKSMLSAKSFRP-- 376
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ RL + + +NKR T+ LH
Sbjct: 377 SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|358369617|dbj|GAA86231.1| sister chromatid cohesion protein [Aspergillus kawachii IFO 4308]
Length = 670
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++TCSAG+A NKM+AKL S NKP +QT V +V+ L K++ LGGKLG
Sbjct: 272 VWDRLQYTCSAGVAKNKMMAKLGSACNKPNKQTIVRNRAVQRFLSGYKFTKIRMLGGKLG 331
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DLLK S ++ + +T TWL+ I RG EV +R KS S K
Sbjct: 332 DQVTAMFGTEQVSDLLKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIKSMLSAK 391
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ +V WL+ ++ RL D + ++KR T+ LH
Sbjct: 392 SFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPKTVALH 436
>gi|296817667|ref|XP_002849170.1| DNA polymerase eta [Arthroderma otae CBS 113480]
gi|238839623|gb|EEQ29285.1| DNA polymerase eta [Arthroderma otae CBS 113480]
Length = 646
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 268 VWDQLKYTCSGGIARNKMIAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TGTWL+ I RG EV R KS S K
Sbjct: 328 KRVASEFETEKIRDLLNIPLDRLKNKLDDDTGTWLYQIIRGEDDSEVTPRTEIKSMISAK 387
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L + + W+ E+ RL + + +NKR +T+H
Sbjct: 388 SF-NPK-LNALDQAERWMRIFVTEIYGRLIDEGVLENKRRPKMITVH 432
>gi|302668344|ref|XP_003025744.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
gi|291189871|gb|EFE45133.1| hypothetical protein TRV_00071 [Trichophyton verrucosum HKI 0517]
Length = 645
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 269 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 328
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 329 KKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAK 388
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ EL RL + + +NKR +T+H
Sbjct: 389 SF-NPK-LASLDQAEKWMRIFVAELYGRLVDEGVLENKRRPKMITVH 433
>gi|239612109|gb|EEQ89096.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ER-3]
Length = 756
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAGIA NKM+AKL S NKP +QT V +V+ L +++ LGGKLG
Sbjct: 328 IWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLG 387
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VG LL ++L+ G +TGTWL+ + RG EV R KS S K
Sbjct: 388 KQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTK 447
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF PG +++ + WL ++ RL + + +NKR +T+H
Sbjct: 448 SFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 492
>gi|261202176|ref|XP_002628302.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
gi|239590399|gb|EEQ72980.1| sister chromatid cohesion protein [Ajellomyces dermatitidis
SLH14081]
Length = 757
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAGIA NKM+AKL S NKP +QT V +V+ L +++ LGGKLG
Sbjct: 329 IWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLG 388
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VG LL ++L+ G +TGTWL+ + RG EV R KS S K
Sbjct: 389 KQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTK 448
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF PG +++ + WL ++ RL + + +NKR +T+H
Sbjct: 449 SFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 493
>gi|350297199|gb|EGZ78176.1| DNA/RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 672
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAG+A NK+L+KL S KP QQT + S++ L KM+ LGGKLG +
Sbjct: 259 YTCSAGVACNKLLSKLGSAYRKPNQQTVLRNRSIQHFLSDFKFTKMRNLGGKLGEQISQM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
TV DLL S ++L+ G +TG W++N RGI EV R+ KS S KSF
Sbjct: 319 YHTDTVKDLLSASVEQLKSKLGDDTGVWVYNTVRGIDTSEVNPRVQIKSMLSAKSFRP-- 376
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ RL + + +NKR T+ LH
Sbjct: 377 SITSFEQAVRWLRIFAADIFSRLVEEGVLENKRRPKTINLH 417
>gi|116193781|ref|XP_001222703.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
gi|88182521|gb|EAQ89989.1| hypothetical protein CHGG_06608 [Chaetomium globosum CBS 148.51]
Length = 661
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 88/169 (52%), Gaps = 3/169 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ + + +TC+AGIA NK+L+KL S KP QQT + +V+ L K + LGGK
Sbjct: 240 VAIRDKLRYTCAAGIAKNKLLSKLGSAHKKPNQQTVIRNRAVRQFLSGFKFTKFRNLGGK 299
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
LG + +V +LL S D+L+ +G TG W++N RG EV +R KS S
Sbjct: 300 LGEQVSQTFKTESVQELLAVSIDQLKSKFGAETGAWVYNTLRGYDTSEVNSRTQIKSMLS 359
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF ++ TV WL ++ RL + + +NKR T+ LH
Sbjct: 360 AKSFRP--SINTVDQAMKWLRIFAADIFARLVDEGVLENKRRPKTINLH 406
>gi|380490518|emb|CCF35959.1| impB/mucB/samB family protein [Colletotrichum higginsianum]
Length = 640
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 20/254 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ + ++TCSAGIA NK+L+KL SG KP QQT + +V L K++ LGGKL
Sbjct: 248 QIFERLQYTCSAGIAKNKLLSKLGSGHKKPNQQTVIRNRAVSHFLSGFKFTKIRNLGGKL 307
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ + V +LL ++++ G +TG+W+ N RGI EV +R KS S
Sbjct: 308 GENVVSTFNTDAVSELLAIPLEQMKAKLGHDTGSWVHNTIRGIDLSEVNSRTQIKSMLSA 367
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF + T WL ++ RL + + +NKR T+ LH D +
Sbjct: 368 KSFRP--YINTPEQAVRWLRIFAADIFARLVEEGVLENKRRPRTINLHHR------HDGQ 419
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
K S+ P+ G ++ F L ++ + + + T+GS W LS+S
Sbjct: 420 TK--SRQGPIPQGKTLDEQALFELAKSLMNQIM------TEGSI---WPCANLSLSVGGF 468
Query: 241 VPVLSGTCSIMKYF 254
++G I +
Sbjct: 469 EDGVTGNMGIGAFL 482
>gi|327352728|gb|EGE81585.1| sister chromatid cohesion protein [Ajellomyces dermatitidis ATCC
18188]
Length = 549
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAGIA NKM+AKL S NKP +QT V +V+ L +++ LGGKLG
Sbjct: 273 IWERLKYTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAVQQFLGGFKFTQIRMLGGKLG 332
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G VG LL ++L+ G +TGTWL+ + RG EV R KS S K
Sbjct: 333 KQVAAIFGTDEVGGLLHVPVEQLRLKLGDDTGTWLYELLRGYEYSEVSVRTQIKSMLSTK 392
Query: 123 SF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF PG +++ + WL ++ RL + + +NKR +T+H
Sbjct: 393 SFRPG---IQSSTQAEKWLRIFVADIYGRLLEEGVLENKRRPKVITIH 437
>gi|440471150|gb|ELQ40183.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae Y34]
Length = 679
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 15/215 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++TCSAG+A NK+L+KL S KP QQT + +V+ L K++ LGGKLG
Sbjct: 268 IFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G +V DLL+ D+L+ G +T W++N RGI EV +R KS S
Sbjct: 328 DQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSA 387
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF ++ +V WL ++ RL + + +NKR T+ LH S
Sbjct: 388 KSFRP--SIHSVDQANKWLRIFSADIFSRLVEEGVLENKRRPKTMNLHHRHNGQSK---- 441
Query: 181 KKFPSKSCPLRYGTAKIQEDT--FNLFQAGLREFL 213
++SCP+ G ++ +D+ + L Q LR+ +
Sbjct: 442 ----ARSCPIPQGV-RVLDDSVLYELAQNLLRQIV 471
>gi|389646325|ref|XP_003720794.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|86196643|gb|EAQ71281.1| hypothetical protein MGCH7_ch7g688 [Magnaporthe oryzae 70-15]
gi|351638186|gb|EHA46051.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae 70-15]
gi|440479415|gb|ELQ60186.1| sister chromatid cohesion protein Eso1 [Magnaporthe oryzae P131]
Length = 668
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 106/214 (49%), Gaps = 13/214 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++TCSAG+A NK+L+KL S KP QQT + +V+ L K++ LGGKLG
Sbjct: 257 IFTRLKYTCSAGVAGNKLLSKLGSAHKKPNQQTVIRGRAVRKFLSDFKFTKIRNLGGKLG 316
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYG-FNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G +V DLL+ D+L+ G +T W++N RGI EV +R KS S
Sbjct: 317 DQVVAAFGTESVSDLLEVPLDQLKLRLGEESTALWVYNTIRGIDNSEVNSRTQIKSMLSA 376
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF ++ +V WL ++ RL + + +NKR T+ LH S
Sbjct: 377 KSFRP--SIHSVDQANKWLRIFSADIFSRLVEEGVLENKRRPKTMNLHHRHNGQSK---- 430
Query: 181 KKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFL 213
++SCP+ G + + + L Q LR+ +
Sbjct: 431 ----ARSCPIPQGVRVLDDSVLYELAQNLLRQIV 460
>gi|347837334|emb|CCD51906.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 668
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++ ++TCSAG+A NKML+KL S KP QQT + +++ L K++ LGGK G
Sbjct: 252 IREKLKYTCSAGVAQNKMLSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTG 311
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ V DLL ++L++ G TGTW++N+ RGI +V +R KS S K
Sbjct: 312 EEVVKLFNTDMVNDLLLVPVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAK 371
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ T WL ++ RL + + +NKR T+ LH
Sbjct: 372 SFRP--SINTPEQANRWLRIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|302501757|ref|XP_003012870.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
gi|291176431|gb|EFE32230.1| hypothetical protein ARB_00752 [Arthroderma benhamiae CBS 112371]
Length = 644
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 268 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 328 KRISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAK 387
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 388 SF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|154309314|ref|XP_001553991.1| hypothetical protein BC1G_07551 [Botryotinia fuckeliana B05.10]
Length = 668
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++ ++TCSAG+A NKML+KL S KP QQT + +++ L K++ LGGK G
Sbjct: 252 IREKLKYTCSAGVAQNKMLSKLGSAHKKPNQQTVIRNRAIQQFLSGFKFTKIRNLGGKTG 311
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ V DLL ++L++ G TGTW++N+ RGI +V +R KS S K
Sbjct: 312 EEVVKLFNTDMVNDLLLVPVEQLKQKLGEETGTWVYNVIRGIDVSDVNSRTQIKSMLSAK 371
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ T WL ++ RL + + +NKR T+ LH
Sbjct: 372 SFRP--SINTPEQANRWLRIFAADIQSRLVEEGVLENKRRPKTINLH 416
>gi|241830533|ref|XP_002414817.1| DNA polymerase eta, putative [Ixodes scapularis]
gi|215509029|gb|EEC18482.1| DNA polymerase eta, putative [Ixodes scapularis]
Length = 727
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 70/236 (29%)
Query: 3 VLKETEFTCSAGIAHNK-------------------------------MLAKLASGMNKP 31
VL++T F CSAG+AHNK +LAKL G++KP
Sbjct: 191 VLEQTGFDCSAGVAHNKVLAKLVCGLHKPRQQTVLPHSAVPTLFATLPVLAKLVCGLHKP 250
Query: 32 AQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YG 90
QQT +P S+V L +LP+ K++ LGGKLG ++ +L V S+D L S +G
Sbjct: 251 RQQTVLPHSAVPTLFATLPVHKLRNLGGKLGEDVREKLQV---------SQDYLCLSVFG 301
Query: 91 FNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 150
TG WL+ +ARG+ E V R LP+S G GK+F G AL +
Sbjct: 302 HRTGQWLYKLARGVDDEPVTCRKLPQSIGCGKNFTGSSALHSA----------------- 344
Query: 151 LCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLF 205
++N R A LT+ + + SR SCP+ Y +I +D +
Sbjct: 345 -----DKNDRTAQLLTVGVTRSGHQGAISR------SCPMVAYCATRIAQDALAVL 389
>gi|449675574|ref|XP_004208438.1| PREDICTED: DNA polymerase eta-like, partial [Hydra magnipapillata]
Length = 333
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 78/133 (58%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ FTCSAGI NKMLAK+ +G +KP QQT V +V + S ++K++ LGGKL
Sbjct: 200 EVKEKLGFTCSAGIGQNKMLAKIVAGFHKPDQQTLVLPDNVAEMFQSTKMRKIRSLGGKL 259
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G L V + DLLK S L++ G +G ++ + RGI E V+ R LPKS G
Sbjct: 260 GKQLAETFNVEYMSDLLKISSHDLEKVIGKKSGDLVYGLCRGIDYEPVRPRQLPKSVGCS 319
Query: 122 KSFPGPRALKTVA 134
K+F G L T A
Sbjct: 320 KNFNGKLTLSTTA 332
>gi|327301129|ref|XP_003235257.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
gi|326462609|gb|EGD88062.1| sister chromatid cohesion protein [Trichophyton rubrum CBS 118892]
Length = 645
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 268 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 328 KKISSEFETDKISDLLTIPLDRLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAK 387
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 388 SF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|145237696|ref|XP_001391495.1| DNA polymerase eta [Aspergillus niger CBS 513.88]
gi|134075969|emb|CAK48163.1| unnamed protein product [Aspergillus niger]
gi|350635582|gb|EHA23943.1| hypothetical protein ASPNIDRAFT_48454 [Aspergillus niger ATCC 1015]
Length = 670
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++TCSAG+A NKM+AKL S NKP +QT V +V+ L K++ LGGKLG
Sbjct: 272 VWDRLQYTCSAGVAKNKMMAKLGSSCNKPNKQTIVRNRAVQRFLGGYKFTKIRMLGGKLG 331
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DL+K S ++ + +T TWL+ I RG EV +R KS S K
Sbjct: 332 DQVTAMFGTEQVSDLIKVSLEQFRAKLDDDTATWLYGIIRGEDKSEVNSRTQIKSMLSAK 391
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ +V WL+ ++ RL D + ++KR T+ LH
Sbjct: 392 SFRP--SINSVDQADKWLSIFAADIFGRLVEDGVLEHKRRPKTVALH 436
>gi|326481425|gb|EGE05435.1| sister chromatid cohesion protein [Trichophyton equinum CBS 127.97]
Length = 642
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 268 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 328 KKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAK 387
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 388 SF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|326468815|gb|EGD92824.1| sister chromatid cohesion protein [Trichophyton tonsurans CBS
112818]
Length = 642
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 268 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 327
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 328 KKISSEFETDKISDLLTIPLDQLKNKLDDDTGMWLYQIIRGEDDSEVTPRTEIKSMISAK 387
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 388 SF-NPK-LASLDQAEKWMRIFVAEIYGRLVDEGVLENKRRPKMITVH 432
>gi|340975581|gb|EGS22696.1| DNA polymerase eta-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 507
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 101/206 (49%), Gaps = 10/206 (4%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NK+L+KL S KP QQT + +V L + K++ LGGKLG +
Sbjct: 277 YTCSAGIARNKLLSKLGSSYKKPNQQTVIRNRAVAHFLSGVKFTKIRNLGGKLGEQVSRA 336
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
++ DLL ++++ G T WL+N RG+ EV R+ KS S KSF
Sbjct: 337 FNTDSIPDLLTVPIEQMKVKLGDETAIWLYNTLRGVDMSEVNPRIQIKSMLSAKSFRP-- 394
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
L T+ WL ++ RL + + +++R T+ LH ++ +R S+S
Sbjct: 395 TLTTIDQAVRWLRIFAADIFSRLVEEGVLEHRRHPKTINLH---YRPLGGQAR----SRS 447
Query: 188 CPLRYGTAKIQEDTFNLFQAGLREFL 213
CP+ G A F+L + L +
Sbjct: 448 CPIPQGRALDDGTLFDLAKTLLTHIV 473
>gi|425773935|gb|EKV12260.1| hypothetical protein PDIG_45850 [Penicillium digitatum PHI26]
gi|425782385|gb|EKV20297.1| hypothetical protein PDIP_17780 [Penicillium digitatum Pd1]
Length = 575
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 86/164 (52%), Gaps = 2/164 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ K +TCSAGIA NKMLAKLASG NKP QT + + L + K++ LGG L
Sbjct: 233 EIFKHMRYTCSAGIARNKMLAKLASGYNKPNHQTVILRRGTREFLSTHKFTKIRGLGGLL 292
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
GT + + V +LL +++E G G W++N+ RG EV R+ +S S
Sbjct: 293 GTQISEKFNTKMVSELLAIPLSQMKEEMGLEVGAWVFNVIRGEEQSEVNPRMHVQSMLSA 352
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 165
K+F P+ + ++ WL +L RL +N RI+ T+
Sbjct: 353 KTFV-PKIV-SIDQAAKWLRIFVADLLGRLDELGSENHRISPTI 394
>gi|400595519|gb|EJP63314.1| impB/mucB/samB family protein [Beauveria bassiana ARSEF 2860]
Length = 799
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 96/181 (53%), Gaps = 5/181 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + +TCSAG+A NK+L+KL SG KP +QT V +V L + K++ LGGKL
Sbjct: 372 EIRERMRYTCSAGVACNKLLSKLGSGFKKPNRQTVVRNRAVGIFLHEFKLTKIRNLGGKL 431
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + G V DLL S ++L+ G TG WL+N RG+ EV R +S S
Sbjct: 432 GEQVVSIFGTEKVEDLLPVSVEQLKAKLGEETGVWLYNTIRGVDTSEVNPRTQLRSMLSA 491
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF P + T WL ++ RL + + +NKR T+H SA ++ + SR
Sbjct: 492 KSF-RPH-INTQEQADRWLRIFVGDIFNRLVEEGVLENKR--RPKTIHLSARHATQTRSR 547
Query: 181 K 181
+
Sbjct: 548 Q 548
>gi|336370736|gb|EGN99076.1| hypothetical protein SERLA73DRAFT_168617 [Serpula lacrymans var.
lacrymans S7.3]
Length = 634
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 101/189 (53%), Gaps = 9/189 (4%)
Query: 2 QVLKETE----FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL 57
Q+ KE +T SAGI+ NK LAKL + KP Q+ + +++ L LP +K++ L
Sbjct: 261 QIRKEVHTKLGYTTSAGISRNKFLAKLCASYKKPNSQSILRNTAIPNYLRPLPFQKIRFL 320
Query: 58 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPK 116
GGKLG +L E V+TVGDLL S +++Q +G N+ W++ + RGI EV+ + + K
Sbjct: 321 GGKLGDALAKEYDVSTVGDLLTISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAMFK 379
Query: 117 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSS 175
S + K+ P P + + HWL L EL+ RL E + + T+ LHA +
Sbjct: 380 SMLASKNLPKP--ITNPSEGHHWLRVLAAELALRLKDSREASPNLWPKTIVLHARKGYET 437
Query: 176 DSDSRKKFP 184
+ FP
Sbjct: 438 ARSKQASFP 446
>gi|331234078|ref|XP_003329699.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308689|gb|EFP85280.1| hypothetical protein PGTG_11449 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 673
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 122/260 (46%), Gaps = 21/260 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV +TCSAGIA NKMLAKL S KP QT + +V+ L + K++ LGGKL
Sbjct: 231 QVFDRLGYTCSAGIATNKMLAKLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKL 290
Query: 62 GTSLQNELGVTTVGDLLKFSE------DKLQESYGFNTGTWLWNIARGISGEEVQARLLP 115
G S+ +EL +T + SE +LQ S G TG W+W RG+ EV+ + L
Sbjct: 291 GQSV-SELVASTCDKSCQLSEVWKIPLSQLQASLGEQTGMWVWETVRGVDRSEVETKTLV 349
Query: 116 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKS 174
KS S K+F ++ T + HWL L +L RL E I + +H
Sbjct: 350 KSMMSSKNFRP--SITTWSQALHWLRILARDLCARLNEAREATPGIWPKLIVMHKRDGLQ 407
Query: 175 SDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 234
+ + FP TA++ +D +F G ++ L F V Y +T+L+
Sbjct: 408 NSLTKQIAFPF--------TAQLTDD--YIFSLG-KKLLQEFAVIQTDQTYRLDTVTSLA 456
Query: 235 VSASKIVPVLSGTCSIMKYF 254
++ + + +G +I +F
Sbjct: 457 LAFHNLERIEAGQRAIQGFF 476
>gi|395332120|gb|EJF64499.1| DNA/RNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 725
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 132/269 (49%), Gaps = 36/269 (13%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+T SAG+A NK LAKL + KP QT + +++ L +P +K++ LGGKLG +L E
Sbjct: 305 YTTSAGLARNKFLAKLTASYKKPMNQTILRNAAIPNYLRPMPFQKIRFLGGKLGKALAEE 364
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGP 127
V+TV DLL S +++Q +G N+ W++ I RGI EV+ + + KS + K+ P P
Sbjct: 365 YDVSTVSDLLTISLEEMQRKFGENS-IWVYEILRGIDRTEVKEKSAVNKSMLASKNLPQP 423
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSK 186
+ A HW+ L EL+ RL + N + T+ LH R+
Sbjct: 424 --ITKAAEGYHWIRVLAAELALRLNEARDSNPALWPKTIVLHI----------RRG---- 467
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-------VKTQGSHYSGWRITALSVSASK 239
Y T + ++ F ++ + + SFG V T GS + ++IT + +S S
Sbjct: 468 -----YETMRSKQTPFPFTRSVTVDVIASFGDKLWKELVGTAGS--TPFKITNVQLSFSG 520
Query: 240 IVPVLSGTCSIMKYFNGPDKFGSTSEQLP 268
I + +G +I + + + EQ+P
Sbjct: 521 IGTMEAGQRTIEGFLSA---RTACDEQIP 546
>gi|111308137|gb|AAI21715.1| Zgc:136881 [Danio rerio]
Length = 294
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 66/92 (71%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T F CSAGI+HNK+LAKLA G+NKP +QT +P SSV L +LPI K++ LGGKLG
Sbjct: 203 VEEHTGFRCSAGISHNKVLAKLACGLNKPNRQTVLPLSSVPQLFSTLPISKIRNLGGKLG 262
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 94
+S+ L V +GDL +FS +L++ +G TG
Sbjct: 263 SSITETLSVENMGDLTRFSRAQLEQHFGDKTG 294
>gi|238505178|ref|XP_002383818.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
gi|220689932|gb|EED46282.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
flavus NRRL3357]
Length = 673
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG +
Sbjct: 279 YTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTAL 338
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DLL+ + ++ + +T WL+ I RG EV R KS S KSF
Sbjct: 339 FGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP-- 396
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ +V + WL ++ RL D + +++R TL LH
Sbjct: 397 SINSVEQAERWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|315048855|ref|XP_003173802.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
gi|311341769|gb|EFR00972.1| DNA polymerase eta [Arthroderma gypseum CBS 118893]
Length = 646
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG
Sbjct: 270 VWDQLKYTCSGGIARNKMMAKLGSACNKPNRQTIVRNRAIQQFLSGYKFTKIRSLGGKLG 329
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +E + DLL D+L+ +TG WL+ I RG EV R KS S K
Sbjct: 330 KKIASEFETDKISDLLNIPLDRLKNKLDDDTGVWLYQIIRGEDDCEVTPRTEIKSMISAK 389
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF P+ L ++ + W+ E+ RL + + +NKR +T+H
Sbjct: 390 SF-NPK-LVSLDQGEKWMRIFVAEIYGRLIDEGVLENKRRPKMITVH 434
>gi|345566460|gb|EGX49403.1| hypothetical protein AOL_s00078g436 [Arthrobotrys oligospora ATCC
24927]
Length = 776
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + +TCSAGI+ NKMLAKL SG KP QQT V +V L S+ ++ LGGKL
Sbjct: 248 EVRRRLGYTCSAGISRNKMLAKLGSGYKKPNQQTIVRNRAVTHFLSSMKFTSIRNLGGKL 307
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G+ + G V ++L + + G +TGTWL+ RGI EV R KS S
Sbjct: 308 GSEVATAFGTENVSEVLSVPLETFKAKLGDDTGTWLYKTIRGIDTTEVLTRTDIKSMLSA 367
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
KSF A+ ++WL C ++ R+
Sbjct: 368 KSFTP--AITRYQQGENWLKVFCADIVSRV 395
>gi|67537016|ref|XP_662282.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|40741530|gb|EAA60720.1| hypothetical protein AN4678.2 [Aspergillus nidulans FGSC A4]
gi|259482486|tpe|CBF77016.1| TPA: DNA polymerase eta (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 674
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 13/206 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG +
Sbjct: 280 YTCSAGIAKNKMMAKLGSATNKPNKQTVVRNRAIQNFLSGFKFTKIRMLGGKLGDQVTAM 339
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G + +LLK S ++ + +T WL+ I RG EV R KS S KSF
Sbjct: 340 FGTEQISELLKVSLEQFRAKLNDDTAVWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP-- 397
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
++ T+ WL+ ++ RL + + ++KR T+ LH + S+
Sbjct: 398 SINTLDQADKWLHIFAADIYGRLVEEGVLEHKRRPKTIALHHR--------QGAQVKSRQ 449
Query: 188 CPLRYGTAKIQED-TFNLFQAGLREF 212
P+ G+A I ED F L + LR+
Sbjct: 450 LPIP-GSATIDEDLLFELGKTLLRQI 474
>gi|169780638|ref|XP_001824783.1| DNA polymerase eta [Aspergillus oryzae RIB40]
gi|83773523|dbj|BAE63650.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867099|gb|EIT76352.1| DNA polymerase iota/DNA damage inducible protein [Aspergillus
oryzae 3.042]
Length = 673
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG +
Sbjct: 279 YTCSAGIAKNKMMAKLGSSSNKPNKQTIVRNRAIQTFLGGFKFTKIRMLGGKLGDQVTAL 338
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DLL+ + ++ + +T WL+ I RG EV R KS S KSF
Sbjct: 339 FGTEQVSDLLQVTLEQFRAKLDDDTANWLYGIIRGEDKSEVNPRTQIKSMLSAKSFRP-- 396
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ +V + WL ++ RL D + +++R TL LH
Sbjct: 397 SINSVEQAERWLRIFAADIYGRLVEDGVLEHRRRPKTLALH 437
>gi|302921584|ref|XP_003053312.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734252|gb|EEU47599.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 683
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 115/254 (45%), Gaps = 20/254 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ +TCSAG+A NK+L+KL SG KP +QT V +V L I K++ LGGKL
Sbjct: 253 KVRQDLGYTCSAGVASNKLLSKLGSGYKKPNKQTVVRNRAVSSFLSGFKITKLRNLGGKL 312
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + ++ +LL+ ++ G +TG W+ N RGI EV +R KS S
Sbjct: 313 GEQIVSTFNTESLTELLEVPLATIKSKLGHDTGLWIHNTIRGIDTSEVNSRTQIKSMLSA 372
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF + + WL ++ RL + + +NKR T+ LH
Sbjct: 373 KSFRP--TINSQEQAVRWLRIFVADIFARLVEEGVLENKRRPRTINLHHR--------HE 422
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
+ S+ P+R G A +E L ++ LG V+ + W LS+S
Sbjct: 423 GQVKSRQSPIRQGKALNEESLLEL----AKDLLGQIIVEGR-----VWPCANLSLSVGGF 473
Query: 241 VPVLSGTCSIMKYF 254
+ G I +
Sbjct: 474 EDGVKGNMGIDAFL 487
>gi|392564568|gb|EIW57746.1| DNA/RNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 699
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 5/178 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+T SAGIA NK LAKL + KP QT + +++ L + +K++ LGGKLG +L E
Sbjct: 302 YTTSAGIARNKFLAKLTASYKKPMNQTVLRNAAIPNYLKPMAFQKIRFLGGKLGKALAEE 361
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGP 127
V+TVGDLL S +++Q +G ++ W++ I RGI EV+ + + KS + K+ P P
Sbjct: 362 YDVSTVGDLLTISLEEMQRKFGEDS-IWVYEILRGIDRSEVKEKSAVNKSMLASKNLPQP 420
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFP 184
+ HW+ L EL+ RL E N + T+ LH + + FP
Sbjct: 421 --ITKATQGYHWIRVLAAELALRLNEAREANTALWPKTIVLHIRQGYETSKSKQTPFP 476
>gi|156058306|ref|XP_001595076.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980]
gi|154700952|gb|EDO00691.1| hypothetical protein SS1G_03164 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 611
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++ ++TCSAGIA NKML+KL SG KP QQT + +V+ L K++ LGGK G
Sbjct: 194 IREKLKYTCSAGIAQNKMLSKLGSGHKKPNQQTVIRNRAVQQFLSGFKFTKIRNLGGKTG 253
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ V DLL + L++ G TGTW+ N+ RG +V +R KS S K
Sbjct: 254 EEVVKLFNTDMVNDLLLVPMEHLKQKLGEETGTWVHNVIRGNDTSDVNSRTQIKSMLSAK 313
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ T WL ++ RL + + +NKR T+ LH
Sbjct: 314 SFRP--SINTPEQANRWLRIFVADIHSRLVEEGVLENKRRPKTINLH 358
>gi|449297801|gb|EMC93818.1| hypothetical protein BAUCODRAFT_36277 [Baudoinia compniacensis UAMH
10762]
Length = 723
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + +TCSAGI+ NKMLAKL +G +KP QT + +V+ L K++ LGGKLG
Sbjct: 253 VFDQLHYTCSAGISKNKMLAKLGAGHHKPNGQTVIRNRAVQQFLSGFKFTKIRNLGGKLG 312
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L V ++LK ++L++ +G +TG+WL++ RG EV R KS S K
Sbjct: 313 DELVAAFNTDLVSEMLKVPLEQLKKQFGDDTGSWLYSTFRGEDTSEVNPRTQIKSMLSAK 372
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ + WL ++ RL + + +NKR T+ LH
Sbjct: 373 SFRP--SINSFEVACKWLRIFVADIFSRLVEEGVLENKRRPKTINLH 417
>gi|70998010|ref|XP_753737.1| sister chromatid cohesion protein (Eso1) [Aspergillus fumigatus
Af293]
gi|66851373|gb|EAL91699.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus Af293]
gi|159126527|gb|EDP51643.1| sister chromatid cohesion protein (Eso1), putative [Aspergillus
fumigatus A1163]
Length = 672
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 13/214 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + +TCS G+A NKM+AKL S NKP +QT V +++ L S K++ LGGKLG
Sbjct: 272 VWNKLSYTCSGGVARNKMMAKLGSACNKPNKQTIVRNRAIQNFLGSFKFTKIRMLGGKLG 331
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DLL ++ + + T +WL+ I RG EV R KS S K
Sbjct: 332 DQVATLFGTEQVSDLLLVPLEQFRAKFDDATASWLYGIIRGEDKSEVNPRTQIKSMLSAK 391
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ + + WL ++ RL D + +N+R T+ LH
Sbjct: 392 SFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPKTIALHHR--------QGG 441
Query: 182 KFPSKSCPLRYGTAKIQED-TFNLFQAGLREFLG 214
+ S+ P+ G+A I E F L + LR+ +G
Sbjct: 442 QVRSRQLPIP-GSATIDEGLLFELGRTLLRQVIG 474
>gi|425772364|gb|EKV10771.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum PHI26]
gi|425774774|gb|EKV13074.1| Sister chromatid cohesion protein (Eso1), putative [Penicillium
digitatum Pd1]
Length = 646
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 30/299 (10%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ +TCSAG+ NKM+AKL S NKP QT V +V+ L +++ LGGKLG
Sbjct: 260 VWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLG 319
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V +LL ++L+ T TWL+ I RG EV R KS S K
Sbjct: 320 DQITAAFGTEKVSELLNAPLEQLRTKLADQTATWLYGIIRGEDRSEVNPRTQIKSMLSAK 379
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ ++ + WL ++ RL D + +N+R +T+H +S
Sbjct: 380 SFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMHHRTAQSR------ 431
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
S+ P+ +A + ++L + LR+ + + W + LS+S S
Sbjct: 432 ---SRQIPIASSSAIDENLLYDLANSLLRQVV---------ADGQAWPCSNLSLSVSSFE 479
Query: 242 PVLSGTCSIMKYFNGPDKFGSTSEQLPDNFIDAAPLSPSGSESYSTLNSTELQNELPGE 300
+S +I + D+ + S ID +P S L STE + +L G+
Sbjct: 480 DGVSNNKAIEGFLIRGDQAKALSHSSRPRDIDNSP---------SELPSTEKRRKLDGD 529
>gi|453085241|gb|EMF13284.1| DNA/RNA polymerase, partial [Mycosphaerella populorum SO2202]
Length = 696
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+ +T SAGI+ NKMLAKL SG KP QT + +V+ L K++ LGGKLG
Sbjct: 239 VFKQLNYTMSAGISRNKMLAKLGSGHKKPNSQTVIRNRAVQHFLSGYKFTKIRSLGGKLG 298
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ TV +LL S ++L++ G TG+WL++I RG EV R KS S K
Sbjct: 299 DQIVAAFNTDTVAELLPVSVEQLKKQLGDETGSWLYDILRGEDNSEVNPRTQIKSMLSAK 358
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ + WL ++ RL + + +NKR ++ +H
Sbjct: 359 SFRP--SINSFDVACKWLRIFVSDIYGRLVEEGVLENKRRPKSINIH 403
>gi|389748620|gb|EIM89797.1| DNA/RNA polymerase [Stereum hirsutum FP-91666 SS1]
Length = 700
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 93/167 (55%), Gaps = 4/167 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ +T SAGIA NK LAKL + K Q+ + +++ L + +K++ LGGKLG
Sbjct: 282 VREQLGYTTSAGIARNKFLAKLTASYRKYDSQSVLRNAAIPNYLQPMQFQKIRFLGGKLG 341
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL-LPKSHGSG 121
+L +E V+TVGDLL S +++Q +G W++ I RGI EV+ + + KS +
Sbjct: 342 KALADEYDVSTVGDLLTISLEEMQRKFG-EESIWVYEILRGIDRSEVKEKPSMAKSMMAS 400
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
K+ P P + TVA HWL L EL+ RL ++ T+ +H
Sbjct: 401 KNLPRP--ITTVAEGPHWLRVLAAELALRLNEARMEHDVWPKTIVVH 445
>gi|303319933|ref|XP_003069966.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240109652|gb|EER27821.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 665
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG + +
Sbjct: 300 YTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIAST 359
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGP 127
V +LL+ ++ + +TG WL+ + RG EV R KS S KSF PG
Sbjct: 360 FETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG- 418
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
+ ++ + WL E+ RL + + ++KR LT+H S + SR+
Sbjct: 419 --INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ----- 469
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSG 246
P+ G A +E F L + L++ T H W L+++ S +SG
Sbjct: 470 -VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPCMNLALTVSGFEDGVSG 519
Query: 247 TCSIMKYFN 255
S+ +F
Sbjct: 520 NQSLDSFFT 528
>gi|452002715|gb|EMD95173.1| hypothetical protein COCHEDRAFT_1129437 [Cochliobolus
heterostrophus C5]
Length = 717
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 4/161 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS G+A NKMLAKL SG KP QQT + +VK L + K++ LGGKLG + +
Sbjct: 259 YTCSGGVARNKMLAKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVSI 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DL++ D+L++ G +TG+WL++I RG EV R KS S KSF
Sbjct: 319 FGTDKVKDLIEQPLDQLKK-LGDDTGSWLYSIIRGEDNSEVNPRTQIKSMLSAKSFRP-- 375
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ R + + +NKR ++ LH
Sbjct: 376 SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|320034290|gb|EFW16235.1| sister chromatid cohesion protein [Coccidioides posadasii str.
Silveira]
Length = 665
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG + +
Sbjct: 300 YTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIAST 359
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGP 127
V +LL+ ++ + +TG WL+ + RG EV R KS S KSF PG
Sbjct: 360 FETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG- 418
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
+ ++ + WL E+ RL + + ++KR LT+H S + SR+
Sbjct: 419 --INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ----- 469
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSG 246
P+ G A +E F L + L++ T H W L+++ S +SG
Sbjct: 470 -VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPCMNLALTVSGFEDGVSG 519
Query: 247 TCSIMKYFN 255
S+ +F
Sbjct: 520 NQSLDSFFT 528
>gi|392865724|gb|EAS31537.2| sister chromatid cohesion protein [Coccidioides immitis RS]
Length = 665
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM+AKL S NKP +QT V +++ L K++ LGGKLG + +
Sbjct: 300 YTCSAGIARNKMMAKLGSACNKPNKQTIVRNRAIQQFLGGFKFTKIRMLGGKLGKQIAST 359
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF-PGP 127
V +LL+ ++ + +TG WL+ + RG EV R KS S KSF PG
Sbjct: 360 FETEQVDELLRVPLEQFKAKLDDDTGMWLYELIRGNDWSEVNPRTQIKSMISTKSFRPG- 418
Query: 128 RALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
+ ++ + WL E+ RL + + ++KR LT+H S + SR+
Sbjct: 419 --INSLEQAEKWLRIFAAEIYGRLVEEGVLEHKRRPKVLTIHHR--HSGHTKSRQ----- 469
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVLSG 246
P+ G A +E F L + L++ T H W L+++ S +SG
Sbjct: 470 -VPIPTGMAIDEEPLFALAKDLLKQV-------TNEGHM--WPCMNLALTVSGFEDGVSG 519
Query: 247 TCSIMKYFN 255
S+ +F
Sbjct: 520 NQSLDSFFT 528
>gi|322696817|gb|EFY88604.1| sister chromatid cohesion protein Eso1 [Metarhizium acridum CQMa
102]
Length = 585
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 11/214 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV +TCSAGIA+NKM++KL SG KP QT V +V L + K++ LGGKL
Sbjct: 184 QVHGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKL 243
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + ++ DLL+ S ++++ G TG+WL + RGI EV +R KS S
Sbjct: 244 GERVVSVFNTQSIKDLLEVSLEQMKSKLGDETGSWLHDTLRGIDNSEVNSRTQIKSMLSA 303
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF ++ T WL ++ RL + + N+R ++ LH +
Sbjct: 304 KSFRP--SISTEEQALKWLRIFVGDIFSRLVEEGVLDNRRRPRSINLHHRHAGQTR---- 357
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 214
SK P+ G +E F+L + L + L
Sbjct: 358 ----SKQSPIPPGQVIDEESLFHLAKDLLTQILA 387
>gi|398406126|ref|XP_003854529.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
gi|339474412|gb|EGP89505.1| hypothetical protein MYCGRDRAFT_38315 [Zymoseptoria tritici IPO323]
Length = 678
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 118/253 (46%), Gaps = 20/253 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++ ++TCSAG++ NKMLAKL SG KP QT + +V+ L K++ LGGKLG
Sbjct: 248 IWEQLKYTCSAGLSRNKMLAKLGSGHKKPNSQTIIRNRAVQHFLSGFKFTKIRNLGGKLG 307
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ TV +LL +++++ G +TG WL +I RG EV R KS S K
Sbjct: 308 DEVVAAFNTDTVSELLPVPVEQMKKQLGDDTGMWLHSIIRGEDNSEVNPRTQIKSMLSAK 367
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ + WL ++ RL + + NKR TLT+H + +R
Sbjct: 368 SFRP--SINSFEVACRWLRIFVADIFGRLVEEGVLDNKRRPKTLTIH----HRQGAQTR- 420
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
SK P+ G A I ED L++A + L GV G W LS++
Sbjct: 421 ---SKQAPIPMGRA-ITED--GLYEAA-KNLLA--GVVVDG---RAWPCANLSLAVGGFE 468
Query: 242 PVLSGTCSIMKYF 254
+ G I +
Sbjct: 469 EGVQGNLGIGNFL 481
>gi|340519771|gb|EGR50009.1| predicted protein [Trichoderma reesei QM6a]
Length = 661
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 117/260 (45%), Gaps = 20/260 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ + +TCSAGIA++K+++KL S KP QT V +V L + + KM+ LGGKL
Sbjct: 247 QIRERLGYTCSAGIANSKLVSKLGSAYKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKL 306
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + +V +L D+++ G T WL+N RG+ EV +R KS S
Sbjct: 307 GDQVVSIFNTESVKELRDIPLDQIKAKLGDETAVWLYNTIRGVDHSEVNSRTQIKSMLSA 366
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF ++ T WL ++ RL + + ++KR T+ LH +
Sbjct: 367 KSFRP--SINTPEQAIKWLRIFAGDIYSRLVEEGILEHKRWPRTINLHHRHAGQTR---- 420
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240
SK P+ G A ++ FNL + L + + V W LS+S
Sbjct: 421 ----SKQSPISPGKALDEQALFNLAKDLLHQIMAEGDV---------WPCANLSLSVGGF 467
Query: 241 VPVLSGTCSIMKYFNGPDKF 260
+ G +I +F D+
Sbjct: 468 EEGVKGNMAIGAFFKKRDEV 487
>gi|255955947|ref|XP_002568726.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590437|emb|CAP96625.1| Pc21g17280 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 646
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ +TCSAG+ NKM+AKL S NKP QT V +V+ L +++ LGGKLG
Sbjct: 260 VWEKLSYTCSAGLGRNKMIAKLGSACNKPNLQTVVRNRAVQNFLGGYKFTQIRMLGGKLG 319
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DLL ++L+ +T +WL+ I RG EV R KS S K
Sbjct: 320 EQITAAFGTEKVSDLLNVPLEQLRSKLADHTASWLYGIIRGDDRSEVNPRTQIKSMLSAK 379
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
SF ++ ++ + WL ++ RL D + +N+R +T+H
Sbjct: 380 SFRP--SINSLDQAEKWLRIFAADIYGRLVEDGVLENRRRPKVITMH 424
>gi|242790335|ref|XP_002481538.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718126|gb|EED17546.1| sister chromatid cohesion protein (Eso1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 658
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAGIA NKM++KL S NKP +QT + +++ L +++ LGGKLG ++ E
Sbjct: 275 YTCSAGIARNKMMSKLGSAQNKPNKQTIIRNRAIQNFLGGFQFTRIRMLGGKLGEQIRAE 334
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V +LL S ++ + +T WL+NI RGI EV R KS S KSF
Sbjct: 335 FGTEQVKELLNISVEQFKAKLDDDTAVWLYNIIRGIDDSEVNTRTQIKSMLSAKSFRP-- 392
Query: 129 ALKTVASVQHWLNQLCEELSERL 151
++ + + WL +L L
Sbjct: 393 SINSADQARKWLRIFAADLYNSL 415
>gi|358385031|gb|EHK22628.1| hypothetical protein TRIVIDRAFT_191350 [Trichoderma virens Gv29-8]
Length = 654
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 90/168 (53%), Gaps = 3/168 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++ +TCSAGIA+NK+++KL S KP QT V +V L + + KM+ LGGKL
Sbjct: 247 EIREKLGYTCSAGIANNKLVSKLGSAFKKPNAQTVVRSRAVLPFLTGIKVTKMRNLGGKL 306
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + G +V +L D+++ G T WL+N RGI EV +R KS S
Sbjct: 307 GDQVVSTFGTESVKELRDIPLDQIKAKLGDETAVWLYNTIRGIDLSEVNSRTQIKSMLSA 366
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF ++KT WL ++ RL + + ++KR T+ LH
Sbjct: 367 KSFRP--SIKTPEQGIKWLRIFAGDIYSRLVEEGILEHKRWPRTINLH 412
>gi|451847016|gb|EMD60324.1| hypothetical protein COCSADRAFT_39969 [Cochliobolus sativus ND90Pr]
Length = 716
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS G+A NKMLAKL SG KP QQT + +VK L + K++ LGGKLG + +
Sbjct: 259 YTCSGGVARNKMLAKLGSGYKKPNQQTVIRNRAVKNFLSDMKFTKIRMLGGKLGDEVVST 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DL++ D+L++ G +TG+WL++ RG EV R KS S KSF
Sbjct: 319 FGTDKVRDLMEQPLDQLKK-LGEDTGSWLYSTIRGEDNSEVNPRTQIKSMLSAKSFRP-- 375
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ R + + +NKR ++ LH
Sbjct: 376 SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|408392199|gb|EKJ71557.1| hypothetical protein FPSE_08196 [Fusarium pseudograminearum CS3096]
Length = 737
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 11/214 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ +TCSAG+A NK+L+KL S KP +QT V +V + + K++ LGGKL
Sbjct: 304 EVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKVTKLRNLGGKL 363
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + V +LL+ ++ G +TG W++N RGI EV +R KS S
Sbjct: 364 GEQIVSTFNTENVTELLEVPLSSMKAKLGHDTGFWVFNTIRGIDTSEVNSRTQIKSMLSA 423
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF + + WL ++ RL + + +NKR T+ LH
Sbjct: 424 KSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLENKRRPKTMNLH--------HRHE 473
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 214
+ S+ P+ G A +E F L + L + +
Sbjct: 474 GQVRSRQVPIHQGRALDEECLFELAKDLLSQIIA 507
>gi|119479517|ref|XP_001259787.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
gi|119407941|gb|EAW17890.1| sister chromatid cohesion protein (Eso1), putative [Neosartorya
fischeri NRRL 181]
Length = 673
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 13/214 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + +TCS G+A NKM++KL S NKP +QT V +++ L S K++ LGGKLG
Sbjct: 273 VWNKLSYTCSGGVARNKMMSKLGSACNKPNKQTIVRNRAIQNFLGSYKFTKIRMLGGKLG 332
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G V DLL ++ + +T +WL+ I RG EV R KS S K
Sbjct: 333 DQVATLFGTEQVSDLLPVPLEQFRAKLDDDTASWLYGIIRGEDKSEVNPRTQIKSMLSAK 392
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF ++ + + WL ++ RL D + +N+R T+ LH
Sbjct: 393 SFRP--SINSADQAEKWLRIFAADIYGRLVEDGVLENRRRPKTVALHHR--------QGG 442
Query: 182 KFPSKSCPLRYGTAKIQED-TFNLFQAGLREFLG 214
+ S+ P+ G+A I E F L + LR+ +G
Sbjct: 443 QVRSRQLPIP-GSATIDESLLFELGRTLLRQVIG 475
>gi|322709529|gb|EFZ01105.1| sister chromatid cohesion protein Eso1 [Metarhizium anisopliae
ARSEF 23]
Length = 651
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 3/168 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV +TCSAGIA+NKM++KL SG KP QT V +V L + K++ LGGKL
Sbjct: 248 QVRGRLGYTCSAGIANNKMVSKLGSGFKKPNSQTVVRSRAVHLFLADFKVTKIRNLGGKL 307
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + ++ DLL+ S + ++ G TG+WL + RGI EV +R KS S
Sbjct: 308 GERVVSTYSTQSIKDLLEVSLEHMKSKLGDETGSWLHDTLRGIDNSEVSSRTQIKSMLSA 367
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF ++ T WL ++ RL + + N+R ++ LH
Sbjct: 368 KSFRP--SISTEEQALKWLRIFVGDIFSRLGEEGVLDNRRRPRSINLH 413
>gi|330916199|ref|XP_003297332.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
gi|311330060|gb|EFQ94574.1| hypothetical protein PTT_07693 [Pyrenophora teres f. teres 0-1]
Length = 715
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS GIA NKML+K+ SG KP QQT + +VK L + K++ LGGKLG +
Sbjct: 259 YTCSGGIARNKMLSKIGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DL++ D+L++ G +TGTW+++I RG EV R KS S KSF
Sbjct: 319 FGTDKVKDLVEQPLDQLKK-LGDDTGTWIYSIIRGEDNSEVNPRTQIKSMLSAKSFRP-- 375
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ R + + +NKR ++ LH
Sbjct: 376 SIHSFEQGVRWLRIFVADIFSRCIEEGVLENKRRPKSINLH 416
>gi|336383501|gb|EGO24650.1| hypothetical protein SERLADRAFT_449409 [Serpula lacrymans var.
lacrymans S7.9]
Length = 636
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 11/191 (5%)
Query: 2 QVLKETE----FTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMK 55
Q+ KE +T SAGI+ NK LAKL + KP Q + + +++ L LP +K++
Sbjct: 261 QIRKEVHTKLGYTTSAGISRNKFLAKLCASYKKPNSQVCSILRNTAIPNYLRPLPFQKIR 320
Query: 56 QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LL 114
LGGKLG +L E V+TVGDLL S +++Q +G N+ W++ + RGI EV+ + +
Sbjct: 321 FLGGKLGDALAKEYDVSTVGDLLTISLEEMQRKFGENS-IWVYELLRGIDRSEVKEKSAM 379
Query: 115 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFK 173
KS + K+ P P + + HWL L EL+ RL E + + T+ LHA
Sbjct: 380 FKSMLASKNLPKP--ITNPSEGHHWLRVLAAELALRLKDSREASPNLWPKTIVLHARKGY 437
Query: 174 SSDSDSRKKFP 184
+ + FP
Sbjct: 438 ETARSKQASFP 448
>gi|46130620|ref|XP_389090.1| hypothetical protein FG08914.1 [Gibberella zeae PH-1]
Length = 684
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 11/214 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ +TCSAG+A NK+L+KL S KP +QT V +V + + K++ +GGKL
Sbjct: 251 EVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKVMKLRNMGGKL 310
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + V +LL+ ++ G +TG W++N RGI EV R KS S
Sbjct: 311 GEQIVSTFNTENVTELLEVPLSSMKAKLGHDTGFWVFNTIRGIDTSEVNPRTQIKSMLSA 370
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSR 180
KSF + + WL ++ RL + + +NKR T+ LH
Sbjct: 371 KSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLENKRRPKTMNLHHR--------HE 420
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 214
+ S+ P+ G A +E F L + L + +
Sbjct: 421 GQVRSRQVPIHQGRALDEECLFELAKDLLSQIIA 454
>gi|402084841|gb|EJT79859.1| sister chromatid cohesion protein Eso1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 785
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 120/257 (46%), Gaps = 20/257 (7%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V + +TCSAG+A NK+L+KL S KP QQT + SV L L K++ LGGK
Sbjct: 257 LAVRERLGYTCSAGVASNKLLSKLGSAHRKPNQQTVIRNRSVHHFLSDLKFTKIRNLGGK 316
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG-ISGEEVQARLLPKSHG 119
LG + G +V +LL + L+ G +GTW+++I RG +GE V +R KS
Sbjct: 317 LGEQVVEAFGSDSVSELLAAPLELLKAKLGAESGTWVYHIIRGDDAGEPVNSRTQIKSML 376
Query: 120 SGKSF-PGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDS 177
S KSF P + AS WL ++ RL + + +NKR T+ LH +
Sbjct: 377 SAKSFRPSINRPEQAAS---WLRIFAADIFARLIEEGVLENKRRPRTMNLHHRNVGQTR- 432
Query: 178 DSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSA 237
S+SC + G A ++ + L Q LR+ + G + W LS+
Sbjct: 433 -------SRSCQIPQGKALDEQVLYELAQTLLRQIVAEAGSE------RAWSCDNLSLQV 479
Query: 238 SKIVPVLSGTCSIMKYF 254
+ ++G I +
Sbjct: 480 AGFEDGITGNMGIGGFL 496
>gi|189192050|ref|XP_001932364.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973970|gb|EDU41469.1| sister chromatid cohesion protein Eso1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 714
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS GIA NKML+KL SG KP QQT + +VK L + K++ LGGKLG +
Sbjct: 259 YTCSGGIARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLSDMKFTKIRMLGGKLGDEVVAM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DL++ D+L+ G +TGTW+ +I RG EV R KS S KSF
Sbjct: 319 FGTDKVRDLVEQPLDQLKR-LGDDTGTWIHSIIRGEDNSEVNPRTQIKSMLSAKSFRP-- 375
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
A+ + WL ++ R + + +NKR ++ LH
Sbjct: 376 AIHSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKSINLH 416
>gi|396501078|ref|XP_003845891.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
gi|312222472|emb|CBY02412.1| hypothetical protein LEMA_P011990.1 [Leptosphaeria maculans JN3]
Length = 731
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 86/161 (53%), Gaps = 4/161 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCSAG+A NKML+KL SG KP QQT + +VK L + K++ LGGKLG +
Sbjct: 260 YTCSAGVARNKMLSKLGSGYKKPNQQTVIRNRAVKHFLGDMKFTKIRMLGGKLGDEVVAM 319
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G V DL+ ++L++ G +TGTWL++ RG EV R KS S KSF
Sbjct: 320 FGTDKVRDLMDQPLEQLKK-LGDDTGTWLYSTIRGEDNSEVNPRTQIKSMLSAKSFRP-- 376
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
++ + WL ++ R + + +NKR T+ LH
Sbjct: 377 SINSFEQGVRWLRIFVADIFSRCVEEGVLENKRRPKTINLH 417
>gi|393221247|gb|EJD06732.1| eta DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 695
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 92/169 (54%), Gaps = 5/169 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ + SAGIA NK LAKLA+ K Q + ++ G L +P +K++ LGGKL
Sbjct: 286 EVHEKLGYLTSAGIARNKFLAKLAASYRKFNTQNILRNLAIPGFLKPMPFQKIRFLGGKL 345
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGS 120
G +L E V+TVGDLL +++Q +G W++ I RGI EV+ + ++ KS +
Sbjct: 346 GKALATEYDVSTVGDLLHIGIEEMQSKFG-ECSVWVYEILRGIDRAEVKEKAVINKSMNA 404
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLH 168
K+ P P L + HW+ L EL+ RL E + TL+LH
Sbjct: 405 SKNLPKP--LTDPSEGPHWIRMLAAELAIRLNEARENTPGLWPRTLSLH 451
>gi|159484140|ref|XP_001700118.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
gi|158272614|gb|EDO98412.1| DNA polymerase eta/iota [Chlamydomonas reinhardtii]
Length = 873
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ FTCSAG++ NK+LAK+ S NKP +QT V V+ +L LP+ K++ LGGKLG
Sbjct: 182 VYEQLGFTCSAGVSVNKLLAKVGSARNKPDKQTLVLPRGVQDMLTDLPLGKLRGLGGKLG 241
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+ +LG T G + LQ G +G W+W + RG E V + PKS S K
Sbjct: 242 AALEGQLGAATAGQAAALPLEALQRVLGERSGLWVWQVVRGQCSEPVTPKDKPKSLLSCK 301
Query: 123 SFPGPRALKTVASVQHWLNQLCEEL 147
SF A +Q WL L EEL
Sbjct: 302 SF---EPTSAPAELQRWLLILAEEL 323
>gi|197244663|dbj|BAG68958.1| DNA polymerase eta [Coprinopsis cinerea]
Length = 641
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGGKLG
Sbjct: 277 VLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGGKLG 336
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LLPKSHGS 120
+L E TVGDLL S D++Q +G ++ W++ I RGI EV+ + L KS +
Sbjct: 337 RALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRGIDRSEVKDKGTTLTKSMLA 395
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 179
K+ P P + + HW+ L EL+ RL + + + + LHA S
Sbjct: 396 SKNLPKP--ITAASEGYHWIRVLAAELALRLNEARQISPNLWPKNIVLHARKGYESSRSK 453
Query: 180 RKKFP 184
+ FP
Sbjct: 454 QAVFP 458
>gi|346320479|gb|EGX90079.1| sister chromatid cohesion protein Eso1 [Cordyceps militaris CM01]
Length = 670
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++ +TCSAG+A NK+L+KL SG KP +QT V +V L + K++ LGGKL
Sbjct: 251 EIREKLRYTCSAGVACNKLLSKLGSGYKKPNRQTVVRNRAVAVFLQDFKLTKIRNLGGKL 310
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + V DLL ++L+ G TG WL+N RG+ EV R KS S
Sbjct: 311 GEQVVSIFETEQVKDLLPVPVEQLKAKLGDETGIWLYNTIRGVDTSEVNPRTQIKSMLSA 370
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHA 169
KSF + T WL ++ RL + + +NKR T+ L A
Sbjct: 371 KSFRP--YINTQDQAIKWLRIFAGDIFNRLVEEGVLENKRRPKTIHLSA 417
>gi|258570849|ref|XP_002544228.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237904498|gb|EEP78899.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 588
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 21/254 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + ++TCS GIA NKM+AKL S NKP +QT V +V+ L K++ LGGKLG
Sbjct: 218 VWERLKYTCSGGIARNKMMAKLGSACNKPNKQTIVRHRAVQQFLGDFKFTKIRNLGGKLG 277
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ + VG+L + ++L+ +TG WL + RG EV R KS S K
Sbjct: 278 KHISSTFETEQVGELQQVPLEQLKAKLDDDTGMWLHELIRGNDYSEVTPRTQIKSMSSTK 337
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F ++ + + WL E+ RL + + ++KR LT+H ++
Sbjct: 338 AFRP--SITSSEQAEKWLRIFVAEIYGRLVEEGVLEHKRRPKVLTIHRYTGQTK------ 389
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
S+ P+ G A +E F L + L++ + + W LS++ S
Sbjct: 390 ---SRQIPIPSGMALGEEPLFALAKQLLKQIVNDGQM---------WPCINLSLTVSGFE 437
Query: 242 PVLSGTCSIMKYFN 255
++G S+ +F
Sbjct: 438 DGVAGNQSLDGFFT 451
>gi|342878015|gb|EGU79426.1| hypothetical protein FOXB_10011 [Fusarium oxysporum Fo5176]
Length = 1648
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ +TCSAG+A NK+L+KL S KP +QT V +V + I K++ LGGKL
Sbjct: 251 EVRQKLGYTCSAGVASNKLLSKLGSAYKKPNKQTVVRNRAVSAFMAGFKITKLRNLGGKL 310
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + + +V +LL ++ G +T W++N RGI EV +R KS S
Sbjct: 311 GEQIVSTFNTESVIELLDVPLATMKTKLGHDTSFWIYNTIRGIDTSEVNSRTQIKSMLSA 370
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
KSF + + WL ++ RL + + +NKR T+ LH
Sbjct: 371 KSFRP--TINSSEQATRWLRIFAADIFARLVEEGVLENKRRPRTMNLH 416
>gi|403415591|emb|CCM02291.1| predicted protein [Fibroporia radiculosa]
Length = 1222
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 121/254 (47%), Gaps = 23/254 (9%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+T SAG+A NK LAKL + KP Q+ + +++ L + +K++ LGGKLG ++ E
Sbjct: 857 YTTSAGLARNKFLAKLTASYKKPNSQSILRNAAIPNYLRPIAFQKIRFLGGKLGKAIAEE 916
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGP 127
+TVGDLL + +++Q G N+ W++ I RGI EV+ + + KS + K+ P P
Sbjct: 917 FDASTVGDLLLINLEEMQRKLGENS-IWVYEILRGIDRSEVKEKSFVNKSMMASKNLPQP 975
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRKKFPSK 186
+T HW+ L EL+ RL +Q + TL LH + + FP
Sbjct: 976 VTNETQG--YHWIRVLAAELALRLTEARDQTPALWPKTLVLHVRQGYDTARSKQAPFPFS 1033
Query: 187 SCPLRYGTAKIQEDTFNLFQAG---LREFLGSFGVKTQGSHYSGWRITALSVSASKIVPV 243
D + AG RE +G T S + +IT +++ + + +
Sbjct: 1034 R----------HVDIDIVASAGDKLWRELVG-----TDTSRAAPVKITHIALGFTGVESM 1078
Query: 244 LSGTCSIMKYFNGP 257
+G SI +F+ P
Sbjct: 1079 EAGQQSIEGFFHTP 1092
>gi|443895989|dbj|GAC73333.1| protein involved in establishing cohesion between sister chromatids
during DNA replication [Pseudozyma antarctica T-34]
Length = 846
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 91/183 (49%), Gaps = 4/183 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL E +T SAGIA NK LAKL S KP QT + SV SLP +K++ LGGKLG
Sbjct: 410 VLDELNYTTSAGIACNKTLAKLCSSWRKPNGQTIMRPCSVANFYSSLPFQKIRFLGGKLG 469
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ E TV DL + D++Q +G W++N+ RGI EV+ R+ ++ + K
Sbjct: 470 NAMGLEWNSATVSDLWQVGLDEMQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASK 528
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 181
S A+ HWL+ L EL+ RL E+ + TL L S +
Sbjct: 529 SVRP--AITKPEEAMHWLSILATELAIRLREAREERTNLWPKTLVLRYIRAGSVPRSRQT 586
Query: 182 KFP 184
FP
Sbjct: 587 AFP 589
>gi|242016043|ref|XP_002428648.1| DNA polymerase IV, putative [Pediculus humanus corporis]
gi|212513311|gb|EEB15910.1| DNA polymerase IV, putative [Pediculus humanus corporis]
Length = 292
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 65/92 (70%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++T F CSAGIAHNK+LAKL +G++KP +QT +P +SV L + LPI+K+K LGGKL
Sbjct: 200 KILEKTSFHCSAGIAHNKILAKLTAGLHKPKKQTILPHNSVPELYEKLPIRKVKSLGGKL 259
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT 93
G + +L V + +L KFS LQ+ + T
Sbjct: 260 GKHVSEKLSVNYMSELYKFSLQDLQQEFDEKT 291
>gi|426199305|gb|EKV49230.1| hypothetical protein AGABI2DRAFT_184029 [Agaricus bisporus var.
bisporus H97]
Length = 672
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)
Query: 4 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 63
++E +T SAGIA NK LAKL + KP Q+ + ++ L LP +K++ LGGKLG
Sbjct: 310 VREMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSYLRPLPFRKIRFLGGKLGE 369
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGK 122
+L E V+T ++Q +G N W++ + RGI EV+ + + KS + K
Sbjct: 370 ALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGIDRNEVKEKGKVNKSMLASK 418
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 181
+ P P +K + HW+ L EL+ RL E+N + TL LHA +
Sbjct: 419 NLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWPKTLVLHARRAYDDGRSKQA 476
Query: 182 KFP 184
FP
Sbjct: 477 PFP 479
>gi|409078314|gb|EKM78677.1| hypothetical protein AGABI1DRAFT_121111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 674
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 15/183 (8%)
Query: 4 LKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGT 63
++E +T SAGIA NK LAKL + KP Q+ + ++ L LP +K++ LGGKLG
Sbjct: 312 VREMGYTTSAGIARNKFLAKLTASYKKPNSQSILRNGAIPSYLRPLPFRKIRFLGGKLGE 371
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGK 122
+L E V+T ++Q +G N W++ + RGI EV+ + + KS + K
Sbjct: 372 ALAKEYDVST----------EMQNKFGEN-AIWVYEVLRGIDRNEVKEKGKVNKSMLASK 420
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSRK 181
+ P P +K + HW+ L EL+ RL E+N + TL LHA +
Sbjct: 421 NLPKP--IKNTSEGHHWIRVLAAELALRLNDAREENPNLWPKTLVLHARRAYDDGRSKQA 478
Query: 182 KFP 184
FP
Sbjct: 479 PFP 481
>gi|328852695|gb|EGG01839.1| hypothetical protein MELLADRAFT_117712 [Melampsora larici-populina
98AG31]
Length = 672
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 115/269 (42%), Gaps = 30/269 (11%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + +TCSAG+ NKMLAKL S KP QT + S +K L L + K++ LGGKLG
Sbjct: 231 VFDQLGYTCSAGVTSNKMLAKLCSSYKKPNAQTVLRPSCIKSFLRDLEVSKIRFLGGKLG 290
Query: 63 TSLQNELG----------------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 106
SL + TTVG++ LQ G TG W+W I RGI
Sbjct: 291 KSLIELIHHPSQATAAEEEAEESIRTTVGEVWNLDLSLLQNKLGDETGMWVWEIVRGIDK 350
Query: 107 EEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTL 165
EV+ + KS S K+F ++ + HWL L +L RL I T+
Sbjct: 351 TEVEPKTQVKSMMSSKNFRP--SISSWEEGIHWLRILSTDLLARLNEARTLTPGIWPKTI 408
Query: 166 TLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 225
+H + + + FP T K+ D +F G R L F +K
Sbjct: 409 VMHKRDGNYNSTAKQIGFPF--------TQKL--DRLYIFNLGQR-LLQEFVIKENSKKK 457
Query: 226 SGWRITALSVSASKIVPVLSGTCSIMKYF 254
+IT+L ++ + + SG I +F
Sbjct: 458 ELGKITSLCLAFQTLERLESGQQGIEGFF 486
>gi|222151871|ref|YP_002561031.1| DNA polymerase IV [Macrococcus caseolyticus JCSC5402]
gi|222121000|dbj|BAH18335.1| DNA-damage-inducible protein P homolog [Macrococcus caseolyticus
JCSC5402]
Length = 354
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 104/180 (57%), Gaps = 11/180 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T TCSAG+++NK LAK+ASGMNKP T + +++V+ +LD+LPI + + GK+
Sbjct: 130 VYETTHLTCSAGVSYNKFLAKIASGMNKPNGLTVIHYNNVQQILDALPIGEFPGV-GKVT 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++L + T DL + SE +L E +G G+ L+N ARGI + ++ KS G
Sbjct: 189 EQKMHKLKIATGKDLRQLSEIELIEQFG-KKGSSLYNKARGIGTDIIEVERERKSIGKET 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F + + + ++ ++ E +E++ + L+ ++A T+T+ K+SD +S K
Sbjct: 248 TFAHDK------NDESYILRVMNEQTEKVAAKLQSMNKVADTITV---KIKTSDFESHTK 298
>gi|323507618|emb|CBQ67489.1| related to DNA polymerase eta [Sporisorium reilianum SRZ2]
Length = 831
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 3/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL E +T SAGIA NK L+KL S KP QT + SV SLP +K++ LGGKLG
Sbjct: 413 VLDELGYTTSAGIASNKTLSKLCSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLG 472
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ E TV DL + D++Q +G W++N+ RGI EV+ R+ ++ + K
Sbjct: 473 NAMGIEWNSATVADLWQVGLDEMQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASK 531
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
S A+ HWL L EL+ RL
Sbjct: 532 SVRP--AITRPEEAIHWLGILATELAIRL 558
>gi|171676163|ref|XP_001903035.1| hypothetical protein [Podospora anserina S mat+]
gi|170936147|emb|CAP60807.1| unnamed protein product [Podospora anserina S mat+]
Length = 696
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
++CSAG++ NK+L+KL S KP QQT + +V L K++ LGGKLG + +
Sbjct: 266 YSCSAGVSRNKLLSKLGSAHKKPDQQTVIRNRAVGHFLSGFKFTKIRNLGGKLGEQVADA 325
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
V DLL ++L++ G G W++ RGI EV + KS S KSF
Sbjct: 326 FKTEAVSDLLTVPIEQLKQKLGDENGVWIYETLRGIDTSEVNSGTQIKSMLSAKSFRPD- 384
Query: 129 ALKTVASVQHWLNQLCEELSERLCSD-LEQNKRIAHTLTLH 168
+ TV WL ++ RL + + ++KR T+ LH
Sbjct: 385 -ITTVEQATKWLRIFAADIFARLVEEGVLEHKRRPKTINLH 424
>gi|299749828|ref|XP_001836363.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298408617|gb|EAU85452.2| eta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 669
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL++ ++ SAG+A NK LAKLA+ KP Q + +++ L + +K++ LGGKLG
Sbjct: 286 VLEQLGYSTSAGLARNKFLAKLAASYRKPFGQNILRNAAIPNYLIPMAFQKIRFLGGKLG 345
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR---GISGEEVQAR--LLPKS 117
+L E TVGDLL S D++Q +G ++ W++ I R GI EV+ + L KS
Sbjct: 346 RALAQEYDAATVGDLLSISLDEMQNKFGEDS-IWVYEILRQYSGIDRSEVKDKGTTLTKS 404
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERL 151
+ K+ P P + + HW+ L EL+ RL
Sbjct: 405 MLASKNLPKP--ITAASEGYHWIRVLAAELALRL 436
>gi|168024165|ref|XP_001764607.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684185|gb|EDQ70589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
Query: 35 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTG 94
+ +P +V GL+ +LP+KK+K LGGKLG + + G TT G+ + L +G G
Sbjct: 210 SVIPPRAVPGLMKALPLKKIKLLGGKLGEEMTKKWGCTTAGEAQQIPHAALVACFGDRLG 269
Query: 95 TWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSD 154
T+ W +G+ E+VQ + L KS + KSF A+ +A ++ WL+ L +L+ R+ D
Sbjct: 270 TYAWKAVQGLKAEQVQVKDLVKSMLASKSFG---AINELAGIRRWLSVLSHDLAIRMSRD 326
Query: 155 LEQNKRIAHTLTLH--ASAFKSSDSDSR 180
E N+R L+ + FK+S SR
Sbjct: 327 FEMNQRQPKVFQLYYRSGKFKNSADHSR 354
>gi|19113570|ref|NP_596778.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe 972h-]
gi|12230051|sp|O42917.1|ESO1_SCHPO RecName: Full=N-acetyltransferase eso1; AltName: Full=ECO1 homolog;
AltName: Full=Sister chromatid cohesion protein eso1
gi|2842510|emb|CAA16862.1| sister chromatid cohesion protein/DNA polymerase eta Eso1
[Schizosaccharomyces pombe]
gi|7678718|dbj|BAA95122.1| Eso1 [Schizosaccharomyces pombe]
Length = 872
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAG++ N ML+KL S NKP +QT + ++++ L SL I ++ LGGK G
Sbjct: 230 IYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFG 289
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ N LG ++ D+ S D L + G G +WN+ GI E+ ++ KS S K
Sbjct: 290 EEIINLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAK 349
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+F + +K+ +W +L R +LE +R
Sbjct: 350 NF-SQQKVKSEEDAINWFQVFASDLRSRFL-ELEGMRR 385
>gi|326429234|gb|EGD74804.1| hypothetical protein PTSG_12528 [Salpingoeca sp. ATCC 50818]
Length = 984
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 17/175 (9%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ V + + SAGI+H+K++AK+ SG NKP QT +P + + +L LPI ++ QL GK
Sbjct: 216 VAVYERLGYVVSAGISHSKLMAKVGSGHNKPGHQTIIPHYAARPMLAKLPISRVPQLHGK 275
Query: 61 LGT----SLQNELG-----------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGIS 105
+G +LQ G V D L + + L G TW+ RG
Sbjct: 276 MGRAVKLALQESRGEHWRYQALSSREVLVEDCLGLTLEYLASKLGREAATWVHAFLRGHD 335
Query: 106 GEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
V + P+S KS +A+ T +++HW+ LC L+ER+ D +N R
Sbjct: 336 TRAVHPKGPPRSLLEAKST--SKAMTTYPALRHWVGNLCFGLAERILDDHARNNR 388
>gi|388852652|emb|CCF53815.1| related to DNA polymerase eta [Ustilago hordei]
Length = 874
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL E +T SAGI NK L+KL S KP QT + SV SLP +K++ LGGKLG
Sbjct: 431 VLDELGYTTSAGIGSNKTLSKLCSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLG 490
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ E TV DL + D++Q G W++N+ RGI EV+ R+ ++ + K
Sbjct: 491 NAMGVEWNSATVSDLWNVTLDEMQAKLG-EEARWVYNVLRGIDYSEVRERVNNQTMLASK 549
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
S A+ HWL L EL+ RL
Sbjct: 550 SVRP--AITKPEEAMHWLTILATELAIRL 576
>gi|169623303|ref|XP_001805059.1| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
gi|160704960|gb|EAT77740.2| hypothetical protein SNOG_14888 [Phaeosphaeria nodorum SN15]
Length = 652
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 1/116 (0%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS G+A NKMLAKL SG KP QQT + ++K L + K++ LGGKLG
Sbjct: 259 YTCSGGVAKNKMLAKLGSGYKKPNQQTVIRNRAIKHFLSDMKFTKIRMLGGKLGDEAVAM 318
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
G V L++ ++L++ G +TG+WL+NI RG EV R KS S KSF
Sbjct: 319 FGTDLVKSLMEQPLEQLKK-LGDDTGSWLYNIIRGEDHSEVNPRTQIKSMLSAKSF 373
>gi|326335225|ref|ZP_08201421.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692633|gb|EGD34576.1| DNA-directed DNA polymerase IV [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 367
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 15/226 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS NKP Q TVP S V L+ L +KK + GK+
Sbjct: 129 KIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPSKVLSFLEGLDVKKFYGI-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G+ T DL S ++LQ +G N+G + + IARGI VQ L KS G
Sbjct: 188 TAEKMYQKGIFTGADLRAKSLEELQSYFG-NSGEYFYQIARGIHLSPVQPFRLIKSIGVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F K ++S + ++ + ++LSE + L + K +A T+TL K SD +
Sbjct: 247 HTFE-----KNISS-EIFMTEPLQQLSEEVSLRLSKKKLLAKTVTL-----KLKYSDFKI 295
Query: 182 KFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGVKTQGSHY 225
+ S++ P G + L+Q LRE + GV +Y
Sbjct: 296 QTRSRTIPEFIGDSPTIYHIVKELLYQEKLRESIRLLGVSLSNFNY 341
>gi|260061439|ref|YP_003194519.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
gi|88785571|gb|EAR16740.1| DNA polymerase IV [Robiginitalea biformata HTCC2501]
Length = 366
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ET T SAGI+ NK +AK+AS NKP Q TVP V+ L+SL I+K + GK+
Sbjct: 134 RILEETGLTASAGISVNKFIAKVASDFNKPNGQKTVPPEDVQEFLESLEIRKFHGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
N LG+ T DL + SE L +G +G + + RG+ VQ +PKS G+
Sbjct: 193 TAEKMNALGIFTGADLRRQSEHFLTGHFG-KSGHHYYRVVRGVHDSPVQPSRVPKSLGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F L + + L ++ EELS RL + K I TL + S F
Sbjct: 252 RTF--SENLSSEVFMVEKLTKIAEELSRRLRTRNRSGKTI--TLKIRYSDF 298
>gi|413943903|gb|AFW76552.1| hypothetical protein ZEAMMB73_679088 [Zea mays]
Length = 409
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 57/78 (73%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
++VL+ET+FTCSAGIAHNKMLAKL SGM KPAQQT VP SSV+ LL SLP+KKM + K
Sbjct: 263 VRVLEETQFTCSAGIAHNKMLAKLVSGMRKPAQQTVVPSSSVQDLLASLPVKKMYHVHEK 322
Query: 61 LGTSLQNELGVTTVGDLL 78
+ + E + V +L
Sbjct: 323 ITNFMAPEPMILFVSGVL 340
>gi|358348542|ref|XP_003638304.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
gi|355504239|gb|AES85442.1| hypothetical protein MTR_126s0013 [Medicago truncatula]
Length = 201
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 6/85 (7%)
Query: 441 NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQA 500
NQV IP E + T+ C D + Q S++W I+EIDPS+IDELP EIQDE +
Sbjct: 122 NQVEIPAEGVG------TNNSGCSVDNMPQGSQAWSYNIDEIDPSIIDELPPEIQDEFRT 175
Query: 501 WLRPSKRPHRVKQGFTIADYFSPSK 525
WLRP KRP+ VK+G +I YF P +
Sbjct: 176 WLRPRKRPNVVKRGSSITQYFRPDR 200
>gi|71003135|ref|XP_756248.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
gi|46096253|gb|EAK81486.1| hypothetical protein UM00101.1 [Ustilago maydis 521]
Length = 865
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL E +T SAGI NK L+KL S KP QT + SV SLP +K++ LGGKLG
Sbjct: 420 VLDELGYTTSAGIGSNKTLSKLCSSWRKPNGQTIMRPCSVANFFSSLPFQKIRFLGGKLG 479
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ E TV DL D++Q +G W++N+ RGI EV+ R+ ++ + K
Sbjct: 480 NAMGAEWNSATVSDLWGVGLDEMQAKFG-EEARWVYNVLRGIDYSEVRERVNNQTMLASK 538
Query: 123 SFPGPRALKTVASVQHWLNQLCEELS 148
S A+ HWL+ L EL+
Sbjct: 539 SVRP--AITKPEEATHWLDILSTELA 562
>gi|403337853|gb|EJY68151.1| DNA polymerase eta [Oxytricha trifallax]
Length = 606
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E ++ S GI+HNK +AKLAS NKP QT VP +K + + I ++ GGK+G
Sbjct: 265 IKRELQYNASCGISHNKTMAKLASANNKPNAQTVVPIRYMKRAMKDVKIDSVRFCGGKVG 324
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
SL N G+TT+G + + S + LQ +T W+ +++ GI EEV+ R LP + + K
Sbjct: 325 ESLHNA-GLTTMGQIQETSIEDLQLIVSQSTAQWIKDLSDGICYEEVKERNLPTTANAVK 383
Query: 123 SF 124
+F
Sbjct: 384 TF 385
>gi|167536588|ref|XP_001749965.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771475|gb|EDQ85140.1| predicted protein [Monosiga brevicollis MX1]
Length = 722
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 35/244 (14%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+V +ET + CSAGIAHNK+ AK+ SG NKP+QQT P +S ++ +Q G +
Sbjct: 205 FRVFEETGYVCSAGIAHNKLFAKMGSGFNKPSQQTLYPRASSGD-------QQYRQAGER 257
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
L V D L S +L+ + T WL + RG V ++ P+S
Sbjct: 258 L-----------LVADCLGLSLAELRTEFSSETAAWLHGLLRGHDSRAVASKGPPRSLLE 306
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
KS G +A + + V++W+N LC L+ R+ D ++ R L FK +D
Sbjct: 307 AKSITG-QATQLIV-VEYWINNLCHGLARRILDDARRHNRWPKNYVLQ---FKRR-ADRT 360
Query: 181 KKFPSKSC-PLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASK 239
S+SC P+ + I D QA E + Q G ++ ++ A K
Sbjct: 361 YFGASRSCGPVPH----ITRDMVRHAQANPEEG------RVQADITEGRELSGVAAGARK 410
Query: 240 IVPV 243
VP+
Sbjct: 411 DVPL 414
>gi|392594879|gb|EIW84203.1| DNA polymerase eta [Coniophora puteana RWD-64-598 SS2]
Length = 623
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 94/185 (50%), Gaps = 5/185 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVL ++ SAG+A NK LAKL++ + KP Q+ + ++ L + +K++ LGGKL
Sbjct: 261 QVLDTLGYSTSAGLARNKALAKLSASVRKPNGQSILRNDAIPNYLRPMAFQKIRFLGGKL 320
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGS 120
G + +E V++VGD+L S D++Q +G W++ + RGI EV+ + KS +
Sbjct: 321 GKAFADEYDVSSVGDILTVSLDEMQSKFG-EESLWVYELVRGIDRSEVKEKTAYFKSMLA 379
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDS 179
K+ P P + + W+ L EL+ RL E + T+ LH +
Sbjct: 380 SKNLPKP--ITKSSEGPQWIRVLAAELTLRLNEARETMPSLWPKTIALHLRKGYEASRSK 437
Query: 180 RKKFP 184
+ FP
Sbjct: 438 QAPFP 442
>gi|391347259|ref|XP_003747882.1| PREDICTED: DNA polymerase eta-like [Metaseiulus occidentalis]
Length = 270
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 59/76 (77%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+VL+ET FTCSAGI+HNK++AKLA+G++KP + T VP SSV L ++PI K++ LGGKL
Sbjct: 184 KVLQETGFTCSAGISHNKIVAKLAAGLHKPNRLTVVPHSSVALLFTTVPIGKVRNLGGKL 243
Query: 62 GTSLQNELGVTTVGDL 77
G ++ +L V T+ +L
Sbjct: 244 GENITKDLNVQTMAEL 259
>gi|210620712|ref|ZP_03292198.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
gi|210155213|gb|EEA86219.1| hypothetical protein CLOHIR_00141 [Clostridium hiranonis DSM 13275]
Length = 326
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 7/163 (4%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET T SAG+++NK +AKLAS KP T + +V+ LD+LP+KK +G
Sbjct: 134 RETGLTASAGVSYNKFVAKLASDYQKPNGLTVITEDNVQEFLDTLPVKKFFGVGKVTERV 193
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L+N G+ T DL S +KL++ + N G L+N ARGI V + KS G+ +
Sbjct: 194 LKNN-GINTGYDLRNTSLEKLEKIFK-NRGLELYNFARGIDNRPVNPTRIRKSIGAETTL 251
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + +V L++LCEE++ER+ + ++A T+TL
Sbjct: 252 IENKNIDDAETVM-ILDELCEEVAERMAKE----DKVAKTITL 289
>gi|228472365|ref|ZP_04057130.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
gi|228276233|gb|EEK14968.1| DNA polymerase IV [Capnocytophaga gingivalis ATCC 33624]
Length = 367
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS NKP Q TVP + L L IKK + GK+
Sbjct: 129 KIFEQTGLTASAGISVNKFIAKIASDYNKPNGQKTVPPQEILDFLAPLDIKKFYGI-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G+ T DL S ++LQ +G N G + + IARGI VQ L KS G
Sbjct: 188 TAQKMYQKGIFTGADLRAKSLEELQTYFG-NNGEYFYQIARGIHLSAVQPFRLRKSIGVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F +T + + +L + +EL E + L++ K +A T+TL K SD ++
Sbjct: 247 HTF------ETNITSERFLEKPLKELCEEVALRLKEKKLLAKTVTL-----KLKYSDFKQ 295
Query: 182 KFPSKSCP 189
+ S+S P
Sbjct: 296 QTRSRSIP 303
>gi|361128232|gb|EHL00178.1| putative N-acetyltransferase eso1 [Glarea lozoyensis 74030]
Length = 298
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ ++TCS G+A NKMLAKL S KP QQT V +V+ L L K++ LGGKLG
Sbjct: 194 VREKLKYTCSGGVAQNKMLAKLGSAHKKPNQQTIVRNRAVQQFLSDLKFTKIRGLGGKLG 253
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARG 103
+ + V DLL ++L++ G +TGTW++ I RG
Sbjct: 254 EQITSSFNTDNVKDLLPIPIEQLKQKLGDDTGTWVYQIIRG 294
>gi|170098863|ref|XP_001880650.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644175|gb|EDR08425.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 629
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQ--TTVPFSSVKGLLDSLPIKKMKQLGG 59
QVL++ ++ SAGIA NK LAKL + KP Q + + +++ L + +K++ LGG
Sbjct: 281 QVLQKLGYSTSAGIARNKFLAKLTASYKKPNSQAGSILRNAAIPNYLKPIAFRKIRFLGG 340
Query: 60 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR--LLPKS 117
KLG + E +TV L D +Q +G W++ + RGI EV+ + +L KS
Sbjct: 341 KLGKAFAQEYDASTVTPL-----DDMQNKFG-EESIWVYEVLRGIDRAEVKDKGSVLNKS 394
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSD 176
+ K+ P P +K + HW+ L EL+ RL +++ + TL LHA +
Sbjct: 395 MLASKNLPKP--IKNASEGHHWIRVLAAELALRLNDARKESPNLWPKTLVLHARKGYEAG 452
Query: 177 SDSRKKFP 184
+ FP
Sbjct: 453 RSKQAPFP 460
>gi|402831592|ref|ZP_10880272.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
gi|402281665|gb|EJU30292.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. CM59]
Length = 366
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 110/225 (48%), Gaps = 13/225 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS NKP Q TVP V L L IKK + GK+
Sbjct: 129 KIFEQTGLTASAGISINKFIAKIASDYNKPNGQKTVPPEEVLDFLAQLDIKKFYGI-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G+ T DL + ++LQE +G N G + + IARGI VQ L KS G
Sbjct: 188 TAQKMYQKGIFTGADLRAKTLEELQEYFG-NNGEYFYQIARGIHLSPVQPFRLVKSIGVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK-SSDSDSR 180
+F + + ++ L +LCEE+++RL K + TL L S FK + S +
Sbjct: 247 HTFET--NISSEIFMEEPLKKLCEEVAQRLAKKQLLAKTV--TLKLKYSDFKQQTRSRTL 302
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 225
F S + +++ L+Q LRE + GV +Y
Sbjct: 303 IDFVGDSATIYQVISEL------LYQERLRESVRLLGVSLSHFNY 341
>gi|134112233|ref|XP_775092.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257744|gb|EAL20445.1| hypothetical protein CNBE3660 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 708
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +TC+AGIAHNK +AKL S KP QT + ++V L+ ++ LGGKL
Sbjct: 263 EVYLRLHYTCTAGIAHNKAMAKLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKL 322
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ + G T + S D++Q +G W++NI RGI EV R+ KS +
Sbjct: 323 GAAIAQQFGAKTRRTV---SLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLAS 378
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
KS A+ + WL+ L EL+ RL
Sbjct: 379 KSIRP--AVTSPQQGHQWLSILAGELNVRL 406
>gi|358340778|dbj|GAA48604.1| DNA polymerase eta subunit [Clonorchis sinensis]
Length = 452
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 28 MNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE 87
M Q+ + FS + + P+ + LGGKLG ++ G+ T+G L + S +L E
Sbjct: 1 MEHVRSQSGLTFSPLS--FEIFPVYFRRNLGGKLGVAIMERFGIQTLGQLTEISLTQLTE 58
Query: 88 SYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEEL 147
+G T WL+ + RG + V R + +S G K+F G L + S+++WL L +EL
Sbjct: 59 VFGEKTAQWLYELCRGHDPDAVTPRSIAQSVGCSKNFVGRSILTSTQSIEYWLRCLSDEL 118
Query: 148 SERLCSDLEQNKRIAHTLTLHA 169
ERL D ++R A LTL+
Sbjct: 119 VERLIDDRRIHQRHATRLTLYV 140
>gi|390600437|gb|EIN09832.1| DNA/RNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 634
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 91/186 (48%), Gaps = 13/186 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK--MKQLGGKLGTSLQ 66
+T SAGIA NK LAKLA+ KP QT + S++ L + +K ++ LGGKLG +L
Sbjct: 275 YTTSAGIARNKFLAKLAASYRKPMSQTILRNSAIPNYLRPMKFQKVSIRNLGGKLGEALA 334
Query: 67 NELGVTTVGDLLKFS-EDKLQESYGFNTGTWLWNIAR-----GISGEEVQAR-LLPKSHG 119
E TTVGDLL S D +Q +G W++ I R GI EV+ + ++ KS
Sbjct: 335 QEFDATTVGDLLNVSLADVMQRKFG-EESLWVYEILRYNTRFGIDRSEVKEKSIVNKSML 393
Query: 120 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSD 178
+ K+ P A + HW+ L EL+ RL E + TL LH +
Sbjct: 394 ASKNLATPVAKPSEG--HHWIRVLAAELALRLNEARESRPGLWPKTLVLHVRQGYAQSRS 451
Query: 179 SRKKFP 184
+ FP
Sbjct: 452 KQGPFP 457
>gi|449438635|ref|XP_004137093.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1155
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 102/234 (43%), Gaps = 9/234 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK + +G L
Sbjct: 557 EIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKDLPGIGHAL 616
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ V T L S+D LQ+ +G TG LWN +RG+ V L+ +S G
Sbjct: 617 EEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--LIQESKSIG 673
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K Q +L LC+E+S RL Q + T TL + + + K
Sbjct: 674 AEVNWGVRFKDFKDCQCFLLNLCKEVSLRLNGCGVQGR----TFTLKIKKRRKNADEPTK 729
Query: 182 KFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
C L + T + D + Q +++ G F + + G +++ L
Sbjct: 730 YMGCGDCENLSHSLTVPVATDDLEILQRIVKQLFGFFVIDVKEIRGIGLQVSKL 783
>gi|366090384|ref|ZP_09456750.1| DNA polymerase IV [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 92/166 (55%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + TCSAGI++NK LAKLAS KP T V V+ L L I+K + +G K
Sbjct: 134 EIFTKVHLTCSAGISYNKFLAKLASDYRKPVGITLVRQDEVQDFLFPLAIEKFRGVGKKT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ ++LGV T DL + S +L +G G L+ RGI V+ + + KS G+
Sbjct: 194 VPKM-HQLGVFTGKDLYQLSSGELISHFG-KMGYILYQRVRGIDERPVEWQRIRKSLGNE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F P L TVASV+++L ++ ++RL +L+Q ++ TL +
Sbjct: 252 RTFDRP--LTTVASVENFL----QKSAKRLADELDQQQKHGKTLVI 291
>gi|79529581|ref|NP_199288.4| DNA repair protein REV1 [Arabidopsis thaliana]
gi|59796995|dbj|BAD89586.1| deoxycytidyl transferase [Arabidopsis thaliana]
gi|332007773|gb|AED95156.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1101
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 9/234 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ + +G L
Sbjct: 500 EILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVL 559
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + + T G L S+D LQ+ +G TG LW+ +RG+ V A KS G+
Sbjct: 560 KEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAE 618
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++ G R + VQH+L LC+E+S R L+ + I T TL K + K
Sbjct: 619 VNW-GVR-FRDQQDVQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRKKDAEEPTK 672
Query: 182 KFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
C R T D + Q ++ GSF + + G +++ L
Sbjct: 673 YMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKL 726
>gi|302767294|ref|XP_002967067.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
gi|300165058|gb|EFJ31666.1| hypothetical protein SELMODRAFT_87859 [Selaginella moellendorffii]
Length = 332
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 14/178 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP++K+ +G +
Sbjct: 148 VEKETGYQCSCGISHNKMLAKMACSLNKPDKQTCITQSAVNDFIVPLPVRKIPGVGRQTE 207
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+ E+GV T+GD+ + +L +G G L++ RG VQ + KS
Sbjct: 208 ATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGFSKSLSVED 266
Query: 123 SFPGPRALK-------------TVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
SF +L T +Q L+ L +L RL D + +R T T+
Sbjct: 267 SFKPCSSLDQAKVRLNSSCIRVTSVCLQEILSCLAPDLIARLDEDKAETERTPKTFTV 324
>gi|403162637|ref|XP_003322823.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173018|gb|EFP78404.2| hypothetical protein PGTG_04360 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 366
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV +TCSAGIA NKMLAKL S KP QT + +V+ L + K++ LGGKL
Sbjct: 147 QVFDRLGYTCSAGIATNKMLAKLCSAYKKPNAQTVLRAGAVRDFLRPFELSKLRFLGGKL 206
Query: 62 GTSLQNELGVTTVGDLLKFSE------DKLQESYGFNTGTWLWNIARGISGEEVQARLLP 115
G S+ +EL +T L + S+ +LQ S G TG W+W ++ EV+ + L
Sbjct: 207 GQSV-SELVDSTCDKLCQLSKVWKVPLSQLQASLGEQTGMWVWESVHDVNRSEVETKTLV 265
Query: 116 KSHGSGKSF 124
KS S K+
Sbjct: 266 KSMMSSKNL 274
>gi|354806700|ref|ZP_09040181.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
gi|354514884|gb|EHE86850.1| impB/mucB/samB family protein [Lactobacillus curvatus CRL 705]
Length = 376
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LKET+ SAGI++NK LAK+AS KPA +T V L LPI+K + +G K
Sbjct: 147 EILKETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSRLPIEKFRGVGKKT 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+Q ELG+ T DLL+ SE L +++G G L+ RGI V + KS G+
Sbjct: 207 APRMQ-ELGILTGADLLEQSEMMLMQNFG-KLGYGLYRHVRGIDNRPVAYQRERKSIGNE 264
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++ P L + VQ L +L EL R L +N++ T+ L + RK
Sbjct: 265 NTYGQP--LISEEQVQVELKKLAIELERR----LRKNQKHGLTVVLKVRNRQFETITKRK 318
Query: 182 KF 183
F
Sbjct: 319 TF 320
>gi|297794885|ref|XP_002865327.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
gi|297311162|gb|EFH41586.1| polymerase ATREV1-1105 [Arabidopsis lyrata subsp. lyrata]
Length = 1105
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 13/238 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ + +G L
Sbjct: 500 EILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDGLPVGTLPGVGSVL 559
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS- 120
L + + T G L S+D LQ+ +G TG LW+ +RG+ V A KS G+
Sbjct: 560 KEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAE 618
Query: 121 ---GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 177
G F + + + VQH+L LC+E+S R L+ + I T TL K+
Sbjct: 619 VNWGVRFRDQQDVCIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRKNDAE 672
Query: 178 DSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
+ K C R T D + Q ++ GSF + + G +++ L
Sbjct: 673 EPTKYMGCGDCDNLSRSITVPAATDDVEVLQRISKKLFGSFCLDVKEVRGVGLQVSKL 730
>gi|186529382|ref|NP_001119373.1| DNA repair protein REV1 [Arabidopsis thaliana]
gi|384950720|sp|A3EWL3.1|REV1_ARATH RecName: Full=DNA repair protein REV1; Short=AtREV1; AltName:
Full=Rev1-like terminal deoxycytidyl transferase
gi|125656400|gb|ABN48548.1| polymerase ATREV1-1105 [Arabidopsis thaliana]
gi|332007774|gb|AED95157.1| DNA repair protein REV1 [Arabidopsis thaliana]
Length = 1105
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ + +G L
Sbjct: 500 EILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVL 559
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS- 120
L + + T G L S+D LQ+ +G TG LW+ +RG+ V A KS G+
Sbjct: 560 KEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAE 618
Query: 121 ---GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 177
G F + + + VQH+L LC+E+S R L+ + I T TL K
Sbjct: 619 VNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRKKDAE 672
Query: 178 DSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
+ K C R T D + Q ++ GSF + + G +++ L
Sbjct: 673 EPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKL 730
>gi|307352827|ref|YP_003893878.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156060|gb|ADN35440.1| DNA-directed DNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 361
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCS GI K++AK+ASGMNKPA T V +++ LD LP+ + +G K L+
Sbjct: 145 LTCSVGIGPGKVIAKIASGMNKPAGMTVVRPDAIRDFLDPLPVDAIPGIGKKTKVRLEKH 204
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
G+ T+ DLL +L++++G G + +ARGI EV+ + KS G ++ P
Sbjct: 205 -GIVTIKDLLGCDIQELKDAFG-KHGIMMHRLARGIDDSEVREKEGQKSIGKQTTY--PE 260
Query: 129 ALKTVASVQHWLNQLCEELSERL 151
+ + + L+ LCE + RL
Sbjct: 261 DVSDTSILLSDLSDLCENVQNRL 283
>gi|209489406|gb|ACI49169.1| hypothetical protein Csp3_JD01.001 [Caenorhabditis angaria]
Length = 975
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T+F CSAGI +NKM+AKL +KP QQT +PF V+ +L PI ++ GGK+
Sbjct: 867 KIREKTQFYCSAGIGNNKMMAKLVCARHKPRQQTIIPFQYVRDILKVTPIGDIRGFGGKM 926
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
GT + L + T+G++L +++ E++ +L +A G E V
Sbjct: 927 GTKIMEMLKIKTMGEILTIEFERVVEAFP-EQHEYLKCVAEGYDDEPVH 974
>gi|340621022|ref|YP_004739473.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
gi|339901287|gb|AEK22366.1| DNA polymerase IV 2 [Capnocytophaga canimorsus Cc5]
Length = 370
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 8/183 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS NKP Q TV F V+ LD L +K+ + GK+
Sbjct: 136 KIYEKTGLTASAGISINKFVAKIASDFNKPNGQKTVSFDEVQDFLDVLDVKRFYGI-GKV 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T G+ T DL S L+E +G N + + +ARGI EV+ LPKS G+
Sbjct: 195 TTEKMYLKGIFTGKDLRNKSLSFLEEHFG-NHAIYYYQLARGIHLSEVKPLRLPKSVGAE 253
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F + + + ++ L + +EL ER+ K I TL + S F S K
Sbjct: 254 RTF--SKNITSEVFMEKDLYAIAQELHERMAKKGVSGKTI--TLKIKYSDF--SVQTRSK 307
Query: 182 KFP 184
FP
Sbjct: 308 TFP 310
>gi|449495749|ref|XP_004159933.1| PREDICTED: DNA repair protein REV1-like [Cucumis sativus]
Length = 1032
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T T SAGIA N ++A+LA+ KP Q +P V L+ LPIK + +G L
Sbjct: 472 EIFDTTGCTASAGIATNMLMARLATKTAKPDGQCYIPLEKVDDYLNPLPIKDLPGIGHAL 531
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ V T L S+D LQ+ +G TG LWN +RG+ V L+ +S G
Sbjct: 532 EEKLKKR-SVLTCSQLRMLSKDSLQKDFGLKTGEMLWNYSRGVDNRAVG--LIQESKSIG 588
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
K Q +L LC+E+S RL
Sbjct: 589 AEVNWGVRFKDFKDCQCFLLNLCKEVSLRL 618
>gi|406888144|gb|EKD34717.1| DNA-directed DNA polymerase [uncultured bacterium]
Length = 335
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 88/169 (52%), Gaps = 14/169 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +E + T SAGI+ NK LAK+AS +NKP T+P L SLPI+K + GK
Sbjct: 99 QIFRELQLTASAGISFNKFLAKVASDINKPNGIATIPPGKALEFLSSLPIRKFYGV-GKA 157
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++LG+TT DL ++ ED L +G G++ +I RGI V+ + + KS G
Sbjct: 158 TEQKMHQLGITTGYDLRQWQEDNLILHFG-KIGSFFHDIVRGIDNRPVEPQRIRKSIGCE 216
Query: 122 KSFPGPRALKT--VASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTL 167
+ A+ T + + L L EEL L + KRI +TLTL
Sbjct: 217 TTL----AIDTDDICKINDILTGLAEELGNSL-----KRKRIGGYTLTL 256
>gi|398827094|ref|ZP_10585309.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
gi|398220334|gb|EJN06787.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Phyllobacterium sp. YR531]
Length = 353
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 8/171 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L T T SAGI++NK LAK+AS +NKP Q +P + + LP+KK +G
Sbjct: 129 RILAVTGLTASAGISYNKFLAKIASDLNKPNGQAVIPPKTGPSFIQRLPVKKFHGVGPAT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ ++LG+ T DL + S + L + +G G + + IARGI +VQ KS G+
Sbjct: 189 AEKM-HQLGIETGADLKQRSFEFLSQHFG-KAGAYFYGIARGIDNRDVQPDRKRKSIGAE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
+FP + V ++ QL L ++C N A T+TL F
Sbjct: 247 DTFP-----EDVFELETAREQL-HPLVSKVCQFCSNNDTGAKTVTLKVKYF 291
>gi|124007421|ref|ZP_01692127.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
gi|123987077|gb|EAY26826.1| DNA polymerase IV 2 [Microscilla marina ATCC 23134]
Length = 325
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ T SAGI+ NK LAK+AS M+KP T + + LPIKK +G
Sbjct: 128 KIFDATQLTASAGISVNKFLAKVASDMDKPNGLTLISPEEAADFVAKLPIKKFHGIGKVT 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+Q +LG+ T DL ++ + KL +G G + +NIA+GI V + KS +
Sbjct: 188 AKKMQ-QLGIFTGADLRRWDKAKLVRQFG-KVGNYYFNIAQGIDQRSVNPHRIRKSISTE 245
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L ++ ++ L+QL EEL R +E+ K T+TL
Sbjct: 246 NTF--DHDLASLEEMETALHQLAEELMRR----MEKTKSFGQTITL 285
>gi|291278892|ref|YP_003495727.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
gi|290753594|dbj|BAI79971.1| DNA polymerase IV [Deferribacter desulfuricans SSM1]
Length = 400
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 10 TCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNEL 69
TCS G+ NK++AK+ASG+NKP VP K +DS PI K+ +G +L +N L
Sbjct: 131 TCSIGVGSNKLIAKMASGINKPDGFCYVPREKNKDFIDSFPISKIWGVGRRLAKRFEN-L 189
Query: 70 GVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA 129
G+ + DL F D L E +G N G L+ +A G E V P G S P
Sbjct: 190 GIFSTKDLRDFGVDSLVEMFGKN-GYKLYAMANGEYFEGVNTNEEP-VKSIGHSMTLPMD 247
Query: 130 LKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
+ + + +L QLCE +SER + KR+
Sbjct: 248 IFNMDELSPYLLQLCEMVSERARQNRVSGKRL 279
>gi|158338583|ref|YP_001519760.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
gi|158308824|gb|ABW30441.1| DNA polymerase IV [Acaryochloris marina MBIC11017]
Length = 355
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 88/164 (53%), Gaps = 10/164 (6%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET T SAG++ NK LAK+ASG++KP + V + + LPI+K + GK+ +
Sbjct: 132 QETHLTASAGVSINKFLAKMASGLDKPNGLSLVAPDQAEAFVQQLPIEKFHGI-GKVTAA 190
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS- 123
++LG+ T +L ++SE L +G G + + IARGI V A + KS G+ +S
Sbjct: 191 KMHQLGIQTGAELRQWSEPSLVRQFG-KVGHYYYGIARGIDERPVIANRIRKSIGAERSF 249
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
FP L + L+ + ++ RL +N+R HTLTL
Sbjct: 250 FPDISGLPV---LMEELDAIAAQVHLRLA----ENQRSGHTLTL 286
>gi|451947937|ref|YP_007468532.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
gi|451907285|gb|AGF78879.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Desulfocapsa sulfexigens DSM 10523]
Length = 359
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V E TCSAG+++NK LAK+AS M KP T +P + LLD+LPI K + G++
Sbjct: 132 RVFHEVGLTCSAGVSYNKFLAKVASDMKKPDGLTVIPIDEARSLLDTLPIGKFFGV-GRV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ D+L+F + +L +G G + +IARG+ V+++ KS G+
Sbjct: 191 TEKKMHSLGIHYGRDILRFDKAQLIRFFG-KAGAFFHDIARGVDNRPVESQKGRKSIGTE 249
Query: 122 KSF 124
+F
Sbjct: 250 TTF 252
>gi|449542568|gb|EMD33547.1| hypothetical protein CERSUDRAFT_57122 [Ceriporiopsis subvermispora
B]
Length = 628
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 23/192 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + ++ SAGIA NK LAKL + KP Q+ + +++ L +P +K++ LGGKL
Sbjct: 265 EIYTKLGYSLSAGIARNKFLAKLTASYKKPNNQSILRDAAIPNYLRPMPFQKIRFLGGKL 324
Query: 62 GTSLQNELGVTTVGDLL----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 117
G +L E V+TVGDLL KF ED + W++ I R +S QA K
Sbjct: 325 GKALAQEYDVSTVGDLLSMQRKFGEDSI----------WVYEILRYVS----QAYATCKK 370
Query: 118 HGSGKSFPGPRALKTVASV----QHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAF 172
KS + L + HW+ L EL+ RL E + T+ LH
Sbjct: 371 SAVNKSMLASKNLLNPVTKPSQGHHWIRVLAAELALRLNEARENIPTLWPKTIVLHVRQG 430
Query: 173 KSSDSDSRKKFP 184
S + FP
Sbjct: 431 YDSFRSKQAAFP 442
>gi|428179324|gb|EKX48195.1| DNA polymerase eta, replication coupled repair, partial [Guillardia
theta CCMP2712]
Length = 242
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL+ T FTCS GI+HNKML+KLAS +KP QQT VP V+ L++ LP+K ++ LGGK G
Sbjct: 180 VLEHTSFTCSGGISHNKMLSKLASARHKPNQQTIVPVQGVQSLMEQLPLKNIRGLGGKFG 239
Query: 63 TSL 65
L
Sbjct: 240 NQL 242
>gi|224105631|ref|XP_002313880.1| predicted protein [Populus trichocarpa]
gi|222850288|gb|EEE87835.1| predicted protein [Populus trichocarpa]
Length = 1191
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 107/235 (45%), Gaps = 11/235 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T T SAGIA N ++A+LA+ KP Q +P SV L LPIK + +G L
Sbjct: 566 EIFDTTGCTASAGIAGNMLMARLATRSAKPNGQCYIPSVSVDEYLHKLPIKALPGIGHVL 625
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ + V T G L S++ LQ+ +G TG LWN +RG+ V K+ G+
Sbjct: 626 EEKLKKQ-NVWTCGQLRLISKESLQKDFGLKTGEMLWNYSRGVDNRLVGNIQESKTIGAE 684
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI-AHTLTLHASAFKSSDSDSR 180
++ G R K + Q +L LC+E+S RL Q R+ T TL + +
Sbjct: 685 VNW-GVR-FKDLQDSQCFLLNLCKEVSFRL-----QGCRVQGRTFTLKIKKRRKDAGEPA 737
Query: 181 KKFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
K C L + T I D Q ++ GSF + + G +++ L
Sbjct: 738 KYMGCGDCENLSHSMTVPIAIDDVEALQRITKQLFGSFCLDVKDIRGVGLQVSKL 792
>gi|356495829|ref|XP_003516774.1| PREDICTED: DNA repair protein REV1-like [Glycine max]
Length = 1115
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 10/241 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ K T T SAGIA N ++A++A+ KP Q + V+ L LPI + +G L
Sbjct: 505 EIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLCQLPINALPGIGYVL 564
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ + V T G L S+ LQ+ YG TG LW +RGI V KS G+
Sbjct: 565 QEKLKKQ-NVHTCGQLRMISKASLQKDYGMKTGEMLWIYSRGIDNRLVGGFQESKSVGAD 623
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++ G R K + +H+L LC+E+S RL Q + T TL + + + K
Sbjct: 624 VNW-GVR-FKDIKDCEHFLINLCKEVSLRLQGCGVQGR----TFTLKIKKRRKNADEPAK 677
Query: 182 KFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL-SVSAS 238
C L + T + D + Q +++ LG F + + G ++ L S AS
Sbjct: 678 FMGCGDCENLSHSVTIPVATDNVEILQRIVKQLLGCFYIDVKEIRGIGLHVSRLESAEAS 737
Query: 239 K 239
K
Sbjct: 738 K 738
>gi|256544709|ref|ZP_05472081.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
gi|256399598|gb|EEU13203.1| DNA polymerase IV [Anaerococcus vaginalis ATCC 51170]
Length = 347
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLKET S GI++NK LAKLAS NKP + V +L +L IKK+ LG K
Sbjct: 124 QVLKETGIGVSIGISYNKFLAKLASDWNKPMGIKEISKEEVPEILKNLDIKKVHGLGNKS 183
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ ++GV + DLLK ++ LQ +G G +++ + RG +VQ K G
Sbjct: 184 VQKLK-DIGVYKIADLLKLDQEFLQSLFG-KQGRYVYKVIRGEDNRKVQTN--TKRKSIG 239
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ F + K + + ++ +E+S+++ DL+ A+T+ L
Sbjct: 240 REFTFRKNTKDLKILYAYI----DEISQKIEEDLKAKDIKAYTINL 281
>gi|256819502|ref|YP_003140781.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
gi|256581085|gb|ACU92220.1| DNA-directed DNA polymerase [Capnocytophaga ochracea DSM 7271]
Length = 353
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F P L + + L+ + E+++ RL
Sbjct: 238 ETF--PENLTSEVYMLRELDHIAEDVARRL 265
>gi|410931299|ref|XP_003979033.1| PREDICTED: DNA polymerase eta-like, partial [Takifugu rubripes]
Length = 245
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K T F CSAGI+HNK+LAKLA G+NKP +QT +P SV+ L SLP+ K++ LGGKLG
Sbjct: 186 VEKHTGFQCSAGISHNKVLAKLACGLNKPNRQTLLPLDSVRDLFSSLPVGKIRNLGGKLG 245
>gi|386819686|ref|ZP_10106902.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
gi|386424792|gb|EIJ38622.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Joostella marina DSM 19592]
Length = 367
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 6/172 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K + GK+
Sbjct: 134 RIFEEVGLTASAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEDLEIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T LG+ T DL + S + L E++G +G + +N+ RGI EV+ +PKS G+
Sbjct: 193 TTQKMYSLGIFTGKDLKEKSVEFLTENFG-KSGAFYYNVVRGIHLSEVKPNRIPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
++F L + + L + EL RL K I TL + S FK
Sbjct: 252 RTF--SENLSSEVFMLERLESIANELERRLKKSKIAGKTI--TLKIKYSDFK 299
>gi|380513106|ref|ZP_09856513.1| DNA polymerase IV [Xanthomonas sacchari NCPPB 4393]
Length = 356
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ ETE T SAGIA NK LAK+AS KP Q + V+ L LP+ K+ +G +
Sbjct: 131 QIRAETELTASAGIAPNKFLAKIASDWRKPDGQFVIRPHRVEAFLTPLPVNKVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L ELG+ TVGDL SE +L+ +G + G L+ ARGI V++ +S S
Sbjct: 191 EAKL-AELGIATVGDLRARSEAELEARFG-SFGLRLYQRARGIDERPVESDQPVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F AL L +L+E+ + + +RIA T+ L
Sbjct: 249 DTFAEDLALDA-------LEPAIRQLAEKTWNATRRTERIARTVVL 287
>gi|302755030|ref|XP_002960939.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
gi|300171878|gb|EFJ38478.1| hypothetical protein SELMODRAFT_139565 [Selaginella moellendorffii]
Length = 294
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET + CS GI+HNKMLAK+A +NKP +QT + S+V + LP+ K+ +G +
Sbjct: 161 VEKETGYQCSCGISHNKMLAKMACSLNKPNKQTCITQSAVNDFIVPLPVCKIPGVGRQTE 220
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+ E+GV T+GD+ + +L +G G L++ RG VQ + KS
Sbjct: 221 ATLK-EMGVETMGDMQSLTLAQLSSKFGDRFGNQLFDACRGHDYSRVQDKGFSKSLSVED 279
Query: 123 SF 124
SF
Sbjct: 280 SF 281
>gi|335356977|ref|ZP_08548847.1| DNA polymerase IV [Lactobacillus animalis KCTC 3501]
Length = 360
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET+ TCS G+++NK LAKLAS KP T V VK L LPI+K + +G K
Sbjct: 134 RIYDETQLTCSIGVSYNKFLAKLASDFCKPVGMTVVRPEEVKAFLFPLPIEKFRGVGKKT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + LG+ DL SE L + +G GT L+ RGI V+ R KS G+
Sbjct: 194 APKM-HALGIEKGEDLYAKSERYLNKHFG-KIGTVLYQQVRGIDERPVEVR-ERKSIGTE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F P V+ Q +N +L+ RL +L ++ TL L
Sbjct: 251 RTFIRP----LVSEAQ--VNDEFRQLATRLAKELNNKQKHGKTLVL 290
>gi|312373689|gb|EFR21388.1| hypothetical protein AND_17125 [Anopheles darlingi]
Length = 281
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 56/78 (71%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T + CSAG+AHNK+LAKL +G +KP +QT +P S+ L ++LP+KK+K LGGKLG
Sbjct: 186 VKEKTGYECSAGVAHNKILAKLTAGFHKPNKQTILPIESIAKLYETLPVKKVKGLGGKLG 245
Query: 63 TSLQNELGVTTVGDLLKF 80
+ L + + +L++F
Sbjct: 246 DQVCELLKIKFMSELVQF 263
>gi|81427996|ref|YP_394995.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
gi|78609637|emb|CAI54683.1| DNA-damage-inducible protein P [Lactobacillus sakei subsp. sakei
23K]
Length = 376
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ET+ SAGI++NK LAK+AS KPA +T V L LPI+K + +G K
Sbjct: 148 ILEETQLVSSAGISYNKFLAKMASDYRKPAGRTLVLPEQAIAFLSRLPIEKFRGVGQKTV 207
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+Q+ LG+ T DLL SE L + +G G L+ RGI V+ + KS G+
Sbjct: 208 PKMQD-LGIMTGADLLAQSEMFLMQHFG-KLGYGLYRHVRGIDNRPVEYQRERKSIGNEH 265
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L + VQ L L EL++RL
Sbjct: 266 TYGQP--LISEEQVQVQLKSLAVELAQRL 292
>gi|408371276|ref|ZP_11169044.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
gi|407743237|gb|EKF54816.1| DNA polymerase IV [Galbibacter sp. ck-I2-15]
Length = 367
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T CSAGI+ NK +AK+AS NKP Q TV V L++L I+K + GK+
Sbjct: 134 RIFQQTGLRCSAGISINKFVAKIASDYNKPNGQKTVEPDEVIPFLEALDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL K + L E +G +G+ +N+ RGI V+ +PKS G+
Sbjct: 193 TAQKMYQLGIFTGLDLKKKPIEFLNEHFG-KSGSLYYNVVRGIHNSPVKPDRVPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + ++S L +L E LS L L +NK T+TL
Sbjct: 252 RTFT-----ENLSSEVFMLERL-EHLSVELEQRLRKNKVAGKTITL 291
>gi|68469717|ref|XP_721110.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
gi|46443012|gb|EAL02297.1| hypothetical protein CaO19.8485 [Candida albicans SC5314]
Length = 640
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E +T SAG+A K +AKLA+G KP QT + S++ L + + + +GGKLG
Sbjct: 262 IFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLG 321
Query: 63 TSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 117
S+ N++ V + + FS+ ++E G G ++NI RGI+ E+Q+ + KS
Sbjct: 322 ESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKS 381
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 164
S K+F + + WL +L RL +N ++ T
Sbjct: 382 MTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDNENMELSST 427
>gi|379796249|ref|YP_005326248.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
gi|356873240|emb|CCE59579.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 356
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ T DL SE +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|384097234|ref|ZP_09998355.1| DNA polymerase IV [Imtechella halotolerans K1]
gi|383837202|gb|EID76602.1| DNA polymerase IV [Imtechella halotolerans K1]
Length = 366
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T T SAGI+ NK +AK+AS NKP Q TV V+ L++L I+K + GK+
Sbjct: 134 RIYLNTGLTASAGISINKFIAKIASDYNKPNGQKTVKPKEVESFLEALDIRKFYGI-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T LG+ T DL S + L+ +G N+G+ + I RG V+ +PKS G+
Sbjct: 193 TTEKMYLLGIFTGKDLKTKSREFLEYHFG-NSGSHYYQIVRGFHNSPVKPERIPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ ++S + +L + + +S+ L + L++NK T+TL
Sbjct: 252 HTF-----LENLSS-EVFLKERLDNISQELETRLKKNKLAGKTITL 291
>gi|312796318|ref|YP_004029240.1| DNA polymerase IV [Burkholderia rhizoxinica HKI 454]
gi|312168093|emb|CBW75096.1| DNA polymerase IV (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454]
Length = 388
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V T TCS +A NK+LAK+ S ++KP T + + + + LP++++ +G K G
Sbjct: 150 VRDATGLTCSICVAPNKLLAKIGSELDKPDGMTILSIADLPTRIWPLPVRRVNGIGPKAG 209
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L + LG+ TVGDL K LQE +G + WL ++A GI VQ PKS
Sbjct: 210 EKLVS-LGIATVGDLAKADPGLLQEHFGHSYAAWLADVAHGIDERPVQVTSEPKSMSRET 268
Query: 123 SFPGPRALKTVASVQH---WLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDS 177
+F + V+H L+ + +L R+ DL + + T L L + F++
Sbjct: 269 TF------ERDMHVRHDRASLSAIFTDLCVRVAQDLTRKGYVGRTVGLKLRYADFRTVTR 322
Query: 178 D 178
D
Sbjct: 323 D 323
>gi|429859010|gb|ELA33810.1| sister chromatid cohesion protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 567
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 18/241 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ K+ + T SAGI+ NKMLAK AS MNKPA QT + S+ ++ +L + LG +L
Sbjct: 245 EIKKQLQLTTSAGISCNKMLAKAASRMNKPAGQTILRRKSIPIIMPTLKATSLSGLGRQL 304
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G + G + DLL+ S +++ G G W++N RG V+ R +S +
Sbjct: 305 GQKVVKTFGSDNIRDLLQVSLTEMRLQLGAEDGQWVYNAIRGDEKGPVRPRSEVQSLLAA 364
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCS-DLE-QNKRIAHTLTLHASAFKSSDSDS 179
K+F P+A + + WL +L RL DL+ + R T+ +H +
Sbjct: 365 KTF-IPKA-ENLQQADKWLRIFAADLESRLHDLDLDSEVPRRPRTIAVH-HHINGRFGPT 421
Query: 180 RKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASK 239
R SK P+ +E F + LR+ H W +SVS S
Sbjct: 422 R----SKQAPISPQIEINKESIFTMLHDLLRDL---------TEHGESWPCLGVSVSMSN 468
Query: 240 I 240
+
Sbjct: 469 L 469
>gi|68469958|ref|XP_720989.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|46442884|gb|EAL02170.1| hypothetical protein CaO19.866 [Candida albicans SC5314]
gi|238882146|gb|EEQ45784.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 640
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E +T SAG+A K +AKLA+G KP QT + S++ L + + + +GGKLG
Sbjct: 262 IFEELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLG 321
Query: 63 TSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 117
S+ N++ V + + FS+ ++E G G ++NI RGI+ E+Q+ + KS
Sbjct: 322 ESIINKVNVPPQINSISFIRENFSDASIKEKLGGELGLKVYNIVRGINAIELQSTIEVKS 381
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 164
S K+F + + WL +L RL +N ++ T
Sbjct: 382 MTSTKNFTS-FVISNLFDAYDWLKVFAGDLHNRLIDLDSENMELSST 427
>gi|359475496|ref|XP_002268899.2| PREDICTED: DNA repair protein REV1-like [Vitis vinifera]
Length = 1175
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK + +G L
Sbjct: 522 EIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVL 581
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ V T G L S++ LQ +G TG LWN RG+ V KS G+
Sbjct: 582 EEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQESKSIGAE 640
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++ G R + +H+L LC+E++ RL
Sbjct: 641 VNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 668
>gi|384550711|ref|YP_005739963.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302333560|gb|ADL23753.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
JKD6159]
Length = 356
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTQLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ T DL SE +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDHGIFTGKDLYNKSEFELIHLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|163754636|ref|ZP_02161758.1| putative DNA polymerase [Kordia algicida OT-1]
gi|161325577|gb|EDP96904.1| putative DNA polymerase [Kordia algicida OT-1]
Length = 370
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LK+ T SAGI+ NK +AK+AS NKP Q TVP V L++L I+K + GK+
Sbjct: 134 KILKDVGLTASAGISINKFIAKVASDYNKPNGQKTVPPEEVLDFLEALDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL D L E +G +G + +N+ RGI EV+ + KS G+
Sbjct: 193 TAERMYQLGIFTGKDLKTKDVDFLTEHFG-KSGKFYFNVVRGIHLSEVKPNRIAKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F L + + L + EL +RL
Sbjct: 252 RTFSD--NLTSEIFMLEKLENIANELEKRL 279
>gi|114566886|ref|YP_754040.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337821|gb|ABI68669.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 393
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 10/175 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV E T S GI++NK LAKLAS M+KP + S LL LP+ ++ +G K
Sbjct: 132 QVYSELGLTISVGISYNKFLAKLASDMDKPNGLRIITESEALELLRPLPVSRIWGIGQKT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
SL ++LG+ T+GD+ + L++ G + G W +A GI V+ KS G
Sbjct: 192 EQSL-DKLGIKTIGDIQDSPPEWLEDKIG-SAGRLFWELAHGIDRRAVEPEHERKSLGRE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT--LHASAFKS 174
++F P + A +L +L + + LC L Q A T+T L S FK+
Sbjct: 250 ETF--PEDINDTA----YLEKLIVQFAAELCRKLRQEALFAATITIKLRYSNFKT 298
>gi|296083109|emb|CBI22513.3| unnamed protein product [Vitis vinifera]
Length = 1123
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK + +G L
Sbjct: 500 EIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVL 559
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ V T G L S++ LQ +G TG LWN RG+ V KS G+
Sbjct: 560 EEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVVGVIQESKSIGAE 618
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++ G R + +H+L LC+E++ RL
Sbjct: 619 VNW-GVR-FNDLKDSRHFLVNLCKEVTLRL 646
>gi|332879162|ref|ZP_08446863.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682962|gb|EGJ55858.1| DNA polymerase IV [Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 353
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGI+ NK +AK+AS +NKP Q TV ++ LD+L +KK + GK+
Sbjct: 121 IFAETGLTASAGISINKFIAKIASDVNKPNGQKTVTQDEIQDFLDALNVKKFYGI-GKVT 179
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LGV T DL + S L+ ++G N+G + +ARGI EVQ + KS G+ +
Sbjct: 180 AEKMYALGVFTGKDLRQKSLAFLERNFG-NSGKHYYQLARGIHNGEVQPFRIRKSVGAEQ 238
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + S + L +L + ++ + L Q K TLT+
Sbjct: 239 TFA-----ENLTSEIYMLKEL-DSIASEVAMRLAQQKVAGKTLTI 277
>gi|83647018|ref|YP_435453.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
gi|83635061|gb|ABC31028.1| DNA polymerase IV [Hahella chejuensis KCTC 2396]
Length = 356
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++ T SAG+A NK LAK+AS NKP + VK + LP++K+ + GK+
Sbjct: 129 RVRQDLRLTVSAGVAPNKFLAKIASDWNKPDGIFVIRPQDVKDFIPQLPVRKINGV-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+TT GDL + S+D L+ +G + G L+N++RG+ VQ + KS
Sbjct: 188 TAAKMEALGITTCGDLQRLSKDDLERHFG-SYGERLYNLSRGVDNRPVQTEWVRKSLSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++ L+ + ++ L EEL ER
Sbjct: 247 HTY--DHDLQNLDAILDSCEPLFEELLERF 274
>gi|421485956|ref|ZP_15933508.1| DNA polymerase IV [Achromobacter piechaudii HLE]
gi|400195737|gb|EJO28721.1| DNA polymerase IV [Achromobacter piechaudii HLE]
Length = 356
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS NKP Q V V L LP++K+ + GK+
Sbjct: 128 QIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVVRPGKVLDFLQPLPVRKVPGV-GKV 186
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ +LG+ TVGDL S ++L+ +G G L+ +ARGI EVQ
Sbjct: 187 TQARLEQLGIHTVGDLATHSAEELEHYFG-RYGRRLYELARGIDEREVQ 234
>gi|261338292|ref|ZP_05966176.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
gi|270276954|gb|EFA22808.1| ATP-NAD kinase [Bifidobacterium gallicum DSM 20093]
Length = 502
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 21/221 (9%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV + TCS GIA NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 QVAERFHITCSVGIACNKLVAKMASTNAKPDGMLLIPANRSADFVQLMPLRGIPGIGPAL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGT-WLWNIARGISGEEVQARLLPKSHGS 120
L N G+T+V +L +SE +L ++ G +G LW ARGI EV + KS GS
Sbjct: 207 ERRL-NSWGITSVTELATYSEQELAQATGSASGAHHLWQAARGIDLREVVTQREEKSIGS 265
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
+F + A V+ L++ CE+++ S L + + +A T+T+ +
Sbjct: 266 EHTF--AQDTTDAAVVRSLLHRCCEDVA----STLRRKELLARTVTV------------K 307
Query: 181 KKFPSKSCPLRYGTAKIQEDT-FNLFQAGLREFLGSFGVKT 220
+ P S R T + D +L+ A L + G++T
Sbjct: 308 LRLPDLSYMTRSYTMERPTDMGADLYAATLDQLYTMLGMRT 348
>gi|373111204|ref|ZP_09525464.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|423135773|ref|ZP_17123418.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|423329499|ref|ZP_17307305.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
gi|371640315|gb|EHO05919.1| hypothetical protein HMPREF9715_03193 [Myroides odoratimimus CIP
101113]
gi|371641265|gb|EHO06852.1| hypothetical protein HMPREF9712_03057 [Myroides odoratimimus CCUG
10230]
gi|404603127|gb|EKB02802.1| hypothetical protein HMPREF9711_02879 [Myroides odoratimimus CCUG
3837]
Length = 356
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 4/151 (2%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
M++L+ T T SAGI+ NK LAK+AS NKP Q T+ V L+ L IKK +G K
Sbjct: 128 MKILERTGLTASAGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKKFFGIGKK 187
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ + LG+ T DL S + L E +G G ++I RG+S V+ KS G+
Sbjct: 188 TADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNRTIKSVGT 245
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F L + ++ L+ L EELS RL
Sbjct: 246 ERTF--DENLSSEVFIETKLDMLVEELSLRL 274
>gi|420160537|ref|ZP_14667317.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
gi|394760405|gb|EJF42952.1| ImpB/MucB/SamB family protein [Capnocytophaga ochracea str. Holt
25]
Length = 362
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 129 RIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLDVRKFYGI-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 188 TAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQPFRIRKSVGAE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 247 ETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 286
>gi|291241885|ref|XP_002740840.1| PREDICTED: DNA-directed DNA polymerase eta-like [Saccoglossus
kowalevskii]
Length = 410
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 93 TGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 152
T WL ++ RGI E V+ R LPKS G GK+F G AL T V++WL QL E+ ERL
Sbjct: 2 TRAWLHDVGRGIDNEPVRPRQLPKSVGCGKNFSGKLALATRNEVKYWLLQLATEMEERLQ 61
Query: 153 SDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREF 212
+ E NKR+A ++++ + P ++ +G + DT + + +
Sbjct: 62 IESEMNKRVAKSVSVQVRWGGN---------PPQTASRSFGLHNMDADTISRNALSVIQC 112
Query: 213 LGSFGVKTQGSHYSGW--RITALSVSASKIVPVLS--GTCSIMKYFNGPDKFGST 263
T G+H W I LS+ ASK + G SI +F+G ++ ST
Sbjct: 113 FN-----TAGNHQKAWCPAIITLSMCASKFTETGNNIGKMSISSFFSGKEQSTST 162
>gi|315224925|ref|ZP_07866744.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
gi|314945038|gb|EFS97068.1| DNA-directed DNA polymerase IV [Capnocytophaga ochracea F0287]
Length = 353
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPDGQTTITEAEVQDFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGNYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + S + L +L E ++E + L++ + T+TL
Sbjct: 238 ETFA-----ENLTSEVYMLREL-EHIAEDVARRLDKQQVAGKTVTL 277
>gi|338740349|ref|YP_004677311.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
gi|337760912|emb|CCB66745.1| DNA polymerase IV 2 [Hyphomicrobium sp. MC1]
Length = 361
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET T SAG+++NK LAKLAS M+KP Q +P +++L +KK +G
Sbjct: 133 RIFSETGLTASAGVSYNKFLAKLASDMHKPNGQFVIPPQRGAEFIEALAVKKFHGVGPVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N LG+ T DL S + LQ+ +G +G W + IARG V+ KS GS
Sbjct: 193 AEKL-NTLGIYTGADLRAQSLEFLQQHFG-KSGGWYYAIARGEDDRPVEPNRPRKSSGSE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R L A ++ + ++ +++ C E+N+ T+T+
Sbjct: 251 TTFPEDRFLP--AEIEEGVLEMADDVWV-WC---EKNRSFGATVTV 290
>gi|254525120|ref|ZP_05137175.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
gi|219722711|gb|EED41236.1| DNA polymerase IV [Stenotrophomonas sp. SKA14]
Length = 364
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V+ L LP+ ++ +G +
Sbjct: 131 QIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVEAFLTPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARG+ V+A +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEADQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L++ +L+E+ + + +R+ HT+ L
Sbjct: 249 DTFAEDLLLED-------LSEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|425738440|ref|ZP_18856703.1| DNA polymerase IV [Staphylococcus massiliensis S46]
gi|425479672|gb|EKU46845.1| DNA polymerase IV [Staphylococcus massiliensis S46]
Length = 356
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +T+ T SAG+++NK LAKLASGMNKP T + ++ V +L +L I +G +
Sbjct: 132 IYDKTQLTSSAGVSYNKFLAKLASGMNKPNGLTIIDYNHVHEILMNLDIGDFPGVGSRSK 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ + G+ T DL + S D+L +G G +N RGI EV+A + KS G+ +
Sbjct: 192 EKMHHH-GIYTGADLYQKSMDELIRWFG-KRGVGFYNKVRGIDHREVKAERIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F ++ + + Q ELS + L + ++ A T+T+ +K ++
Sbjct: 250 TF------QSDVNDDALILQKIRELSHKTSERLGKLQKSAGTVTVKIKTYKYETISKQRT 303
Query: 183 FP 184
P
Sbjct: 304 LP 305
>gi|359459403|ref|ZP_09247966.1| DNA polymerase IV [Acaryochloris sp. CCMEE 5410]
Length = 355
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 10/166 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+++ET T SAG++ NK LAK+ASG+ KP + V + + LPI+K + GK+
Sbjct: 130 IVQETHLTASAGVSINKFLAKMASGLEKPNGLSLVAPDQAETFVQQLPIEKFHGI-GKVT 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++LG+ T +L ++SE L +G G + + IARGI V A + KS G+ +
Sbjct: 189 AAKMHQLGIQTGTELRQWSEPSLVRQFG-KVGHYYYGIARGIDQRPVVANRIRKSIGAER 247
Query: 123 S-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
S FP L + L+ + ++ RL +N+R +TLTL
Sbjct: 248 SFFPDISGLPV---LMEELDAIATQVHLRLA----ENQRSGYTLTL 286
>gi|347535095|ref|YP_004842520.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
gi|345528253|emb|CCB68283.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
branchiophilum FL-15]
Length = 361
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS NKP Q TV + V L+ LPIKK + GK+
Sbjct: 134 KIFIELGLTASAGISINKFVAKIASDYNKPNGQKTVAPNEVLLFLEQLPIKKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LG+ T DL S D L++ +G +GT+ +++ RG+ EV+A + KS +
Sbjct: 193 TTEKMYQLGIFTGLDLKSKSLDFLEKHFG-KSGTFYYHVVRGVHNGEVKANRIAKSVAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F L + + L+++ EL R L+++++ T+TL K SD +
Sbjct: 252 HTF--DINLTSEIFMLEKLSKIANELERR----LQKHQKAGKTVTL-----KIKYSDFTQ 300
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 301 QTRSKTLP 308
>gi|429750894|ref|ZP_19283893.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
gi|429163655|gb|EKY05858.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 332 str.
F0381]
Length = 354
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGI+ NK +AK+AS KP QTT+ V+ LD L ++K + GK+
Sbjct: 120 RIFEETGLTASAGISVNKFVAKIASDFRKPNGQTTITADEVQDFLDVLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
ELG+ DL + S L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAQKMYELGIFKGKDLREKSLAFLERNFG-NSGLYFYELSRGIHRAEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA-HTLTL 167
+F + ++ L+ + E+++ RL Q + +A T+TL
Sbjct: 238 HTF--AENFTSEIYMEEALSAIAEDVARRL-----QRQEVAGRTITL 277
>gi|300022279|ref|YP_003754890.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524100|gb|ADJ22569.1| DNA-directed DNA polymerase [Hyphomicrobium denitrificans ATCC
51888]
Length = 360
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L ET T SAG+++NK LAKLAS M KP Q +P + +LP+KK +G
Sbjct: 134 ILSETGLTASAGVSYNKFLAKLASDMRKPNGQYVIPPQRGAEFIATLPVKKFHGIGPVTA 193
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ N LG+ T DL S + LQ +G +G W + IARG V+ KS GS
Sbjct: 194 AKM-NALGIQTGADLRSQSIEFLQRQFG-KSGAWYYAIARGEDDRPVEPNRPRKSSGSET 251
Query: 123 SFPGPRAL 130
+F R +
Sbjct: 252 TFSEDRVI 259
>gi|405120879|gb|AFR95649.1| eta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 704
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +TC+A L S KP QT + ++V L+ ++ LGGKL
Sbjct: 267 EVYLRLHYTCTA----------LCSAWKKPNNQTILRTAAVPAFLNDRDFTDIRSLGGKL 316
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G ++ E G TVGD+L S D++Q+ +G W++NI RGI EV R+ KS +
Sbjct: 317 GAAIAQEFGAKTVGDMLTVSLDEMQKKFG-EESIWVYNILRGIDHSEVTERVTTKSMLAS 375
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
KS A+ + WL+ L EL+ RL
Sbjct: 376 KSIRP--AVTSPQQGHQWLSILAGELNVRL 403
>gi|422320499|ref|ZP_16401558.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
gi|317404723|gb|EFV85111.1| DNA polymerase IV [Achromobacter xylosoxidans C54]
Length = 360
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ ET T SAG+A NK LAK+AS NKP Q + S V L LP++K+ +G +
Sbjct: 132 QIRAETGLTASAGVAPNKFLAKIASDWNKPDGQYVIRPSRVLEFLQPLPVRKVPGVGKVM 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
L+ +LG+ TVGDL + +L+ +G G L+ +ARGI EVQ
Sbjct: 192 QARLE-QLGIHTVGDLATHAAQELEHYFG-RYGRRLYELARGIDDREVQ 238
>gi|348670497|gb|EGZ10319.1| hypothetical protein PHYSODRAFT_522191 [Phytophthora sojae]
Length = 527
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN- 67
+TCS G+A NK+LAKLAS +NKP Q V V L+ SLP++K++ LGGKLG L+
Sbjct: 180 YTCSTGVAGNKLLAKLASPLNKPNGQVVVAPRFVADLMKSLPMRKVRGLGGKLGKQLETA 239
Query: 68 -----ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEE------VQARLLPK 116
+L T +E L + G T ++ I +G G E VQ ++L
Sbjct: 240 KDAFKKLSAHTFLQRCGLAE--LTKHVGQETAAYVHQICQGDDGNEPVEEKKVQVKML-- 295
Query: 117 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 176
G +W+ LCEE+ R + +NKR LT+ + K D
Sbjct: 296 --GC-----------------YWVRLLCEEMVMRCEDERVENKRFPSQLTIQFTRAKPGD 336
>gi|365920653|ref|ZP_09444978.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
gi|364577797|gb|EHM55045.1| putative DNA polymerase IV [Cardiobacterium valvarum F0432]
Length = 354
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T T SAG+++NKMLAK+AS +NKP +P + SLPI++ + GK
Sbjct: 131 EIRAATGLTASAGVSYNKMLAKIASDLNKPDGLAVIPPAEGPAFAASLPIERFHGI-GKA 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + LG+ T DLL+FS + L++++G G + +++ARGI V+ KS GS
Sbjct: 190 TAAHMHALGIKTGADLLRFSAESLRQAFG-KHGDFYYHMARGIDLRPVEPTRERKSIGSE 248
Query: 122 KSF 124
+F
Sbjct: 249 TTF 251
>gi|393779062|ref|ZP_10367315.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392610848|gb|EIW93608.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 353
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ S V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITESEVQNFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ +L + S + L+ ++G N+G + + +ARGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGRNLREKSLEFLERNFG-NSGNYYYELARGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F L + + L+ + E+++ RL
Sbjct: 238 ETF--AENLTSEVYMLRELDHIAEDVARRL 265
>gi|302684051|ref|XP_003031706.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
gi|300105399|gb|EFI96803.1| hypothetical protein SCHCODRAFT_55077 [Schizophyllum commune H4-8]
Length = 635
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 94/194 (48%), Gaps = 16/194 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKK------MK 55
++ +T SAGI NK LAKL + KP + +++ L LP +K ++
Sbjct: 278 EIYARLGYTTSAGIGRNKFLAKLTASYRKPRGLNVLRNAAIPNYLRPLPFQKAGTSFSIR 337
Query: 56 QLGGKLGTSLQNELGVTTVGDLLKFS--EDKLQESYGFNTGTWLWNIA-RGISGEEVQAR 112
LGGKLG ++ E +TVGDL + +++Q+ +G W++ + RGI EV+ +
Sbjct: 338 FLGGKLGKAIAQEYDASTVGDLFVDAPVTEEMQQKFG-EESIWVYEVLRRGIDRNEVKEK 396
Query: 113 -LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC-SDLEQNKRIAHTLTLHAS 170
L KS + K+ P P + A WL L EL+ RL + LE TL LHA
Sbjct: 397 TALFKSMLASKNLPKP--ITNAADGHQWLRVLAAELALRLKDARLESPNLWPKTLVLHAR 454
Query: 171 AFKSSDSDSRKKFP 184
K D+ K+ P
Sbjct: 455 --KGYDTGRSKQAP 466
>gi|219112721|ref|XP_002178112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410997|gb|EEC50926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 460
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVP--FSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
TCSAG+A N +L+K+AS NKP Q VP S+ G L LP +K+ + G++ +
Sbjct: 227 LTCSAGLAPNFLLSKIASDRNKPNGQCLVPSDHESIIGFLHPLPTRKVSGI-GRVTAKIL 285
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG-EEVQARLLPKSHGSGKSFP 125
+ G+ TV DL + ++ + + +L + G SG +E A + G G+
Sbjct: 286 SSFGIATVADLYR-ERSLVRFLFQEASAEFLLRASIGCSGSDERNADDVETDDGPGQK-- 342
Query: 126 GPRALKTVASVQHW--LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
G +T A+ + W +N EE++E L SD++ AHT+T+ +S D SR +
Sbjct: 343 GISRERTFAAKESWTAINLKLEEIAELLSSDMKHKNIFAHTVTVKVK-LRSFDCLSRSRS 401
Query: 184 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW 228
+ ++ A ++ +L + EF GSF V+ G S +
Sbjct: 402 LGRGVFIQ-AAADLRPIALDLLRELKDEFSGSFAVRLLGIRCSSF 445
>gi|77408795|ref|ZP_00785524.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|421147957|ref|ZP_15607629.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
gi|77172576|gb|EAO75716.1| DNA-damage-inducible protein P [Streptococcus agalactiae COH1]
gi|401685295|gb|EJS81303.1| DNA polymerase IV [Streptococcus agalactiae GB00112]
Length = 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTFILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPNRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|314934060|ref|ZP_07841423.1| DNA polymerase IV [Staphylococcus caprae C87]
gi|313653171|gb|EFS16930.1| DNA polymerase IV [Staphylococcus caprae C87]
Length = 356
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I + + GK
Sbjct: 132 IFEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKVMHDNGIFTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|22537865|ref|NP_688716.1| DNA polymerase IV [Streptococcus agalactiae 2603V/R]
gi|25011810|ref|NP_736205.1| DNA polymerase IV [Streptococcus agalactiae NEM316]
gi|76787674|ref|YP_330334.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76798415|ref|ZP_00780656.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77405963|ref|ZP_00783042.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|77413674|ref|ZP_00789858.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|406710106|ref|YP_006764832.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
gi|417006108|ref|ZP_11944678.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|424048829|ref|ZP_17786380.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|81588478|sp|Q8DXW9.1|DPO4_STRA5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81588721|sp|Q8E3I8.1|DPO4_STRA3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123601318|sp|Q3JZG9.1|DPO4_STRA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|22534761|gb|AAN00589.1|AE014270_7 DNA-damage-inducible protein P [Streptococcus agalactiae 2603V/R]
gi|24413351|emb|CAD47430.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562731|gb|ABA45315.1| DNA polymerase IV [Streptococcus agalactiae A909]
gi|76586247|gb|EAO62764.1| DNA polymerase IV (Pol IV) [Streptococcus agalactiae 18RS21]
gi|77160274|gb|EAO71401.1| DNA-damage-inducible protein P [Streptococcus agalactiae 515]
gi|77175415|gb|EAO78205.1| DNA-damage-inducible protein P [Streptococcus agalactiae H36B]
gi|341576289|gb|EGS26700.1| DNA polymerase IV [Streptococcus agalactiae FSL S3-026]
gi|389649850|gb|EIM71325.1| DNA polymerase IV [Streptococcus agalactiae ZQ0910]
gi|406650991|gb|AFS46392.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae
GD201008-001]
Length = 364
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|381186729|ref|ZP_09894299.1| DNA polymerase IV [Flavobacterium frigoris PS1]
gi|379651573|gb|EIA10138.1| DNA polymerase IV [Flavobacterium frigoris PS1]
Length = 360
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAGI+ NK +AK+AS NKP Q TV V L+ LPI+K + GK+
Sbjct: 134 RIFKEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPDEVNAFLEELPIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LGV T DL S + L++ +G +G + +N+ RGI EV++ + KS +
Sbjct: 193 TTEKMYQLGVFTGLDLKSKSVEFLEKHFG-KSGNFYFNVVRGIHNSEVKSDRITKSVAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F S + ++ + E ++ L L ++K T+TL K SD +
Sbjct: 252 HTFD------VNLSSEIFMLEKLEGIAIALERRLNKHKVAGKTITL-----KIKYSDFTQ 300
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 301 QTRSKTVP 308
>gi|339300877|ref|ZP_08650004.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
gi|319745668|gb|EFV97967.1| DNA-directed DNA polymerase IV [Streptococcus agalactiae ATCC
13813]
Length = 369
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 151 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 210
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 211 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 267
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 268 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 304
>gi|118575583|ref|YP_875326.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
gi|118194104|gb|ABK77022.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Cenarchaeum symbiosum A]
Length = 363
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T TCS G+ N++L+K+AS KP T VP V L+ L I+ + +GGK
Sbjct: 138 VRRKTRLTCSVGVTPNRLLSKIASDYKKPDGLTVVPPGKVAEFLEPLDIRDIPGIGGKTE 197
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L E+G+ TVG + +LQ+ +G +GT + N ARGI E V R H
Sbjct: 198 KALA-EMGIRTVGQMRSVDIFELQQRFGRRSGTHMHNAARGIDDEPVSEREPNVQHSR-- 254
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDL 155
+ T+ + L E L E LC DL
Sbjct: 255 -------IVTLKRDSNEFGFLAETLGE-LCRDL 279
>gi|241759928|ref|ZP_04758028.1| DNA polymerase IV [Neisseria flavescens SK114]
gi|241319936|gb|EER56332.1| DNA polymerase IV [Neisseria flavescens SK114]
Length = 352
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+ + GK+
Sbjct: 130 EIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKIPGV-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 189 TLKKMNALGIQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|219116476|ref|XP_002179033.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409800|gb|EEC49731.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 592
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 7/167 (4%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
FT SAGI NK +AKL++ KP Q V LL I+K + LGGKLG ++Q
Sbjct: 224 FTLSAGIGSNKTIAKLSAAYGKPNGQAITYPQFVDTLLADTEIRKCRNLGGKLGKTVQAL 283
Query: 69 L---GVTTVGDLLKF-SEDKLQESYGFNTGTWLWNIARGISGEEVQAR---LLPKSHGSG 121
L TTV + K+ S L++ + T W++ +ARG+ E V ++ L KS +
Sbjct: 284 LPADAPTTVHSIAKYLSLPTLEQHFEAPTAAWVYRVARGVDTEPVASKNESALTKSITAF 343
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
KS P S+ W+ L +E+ R+ D +N R + T+
Sbjct: 344 KSLPFDVQGHDWESLASWIRLLADEIVSRVERDASRNGRYPKSCTIQ 390
>gi|389855914|ref|YP_006358157.1| DNA polymerase IV [Streptococcus suis ST1]
gi|353739632|gb|AER20639.1| DNA polymerase IV [Streptococcus suis ST1]
Length = 355
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLPI+K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEEAMGVLASLPIEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+++GV T DLL E L +++G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HDMGVYTGQDLLDVPEMVLIDTFG-RFGFDLYRKARGISNSPVKVDRVRKSIGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + LE+N++ T+ L
Sbjct: 263 -RKLLYREEDVLKELTSLC----QRVAASLERNEKKGRTIVL 299
>gi|374599088|ref|ZP_09672090.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|423324227|ref|ZP_17302068.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
gi|373910558|gb|EHQ42407.1| DNA polymerase IV [Myroides odoratus DSM 2801]
gi|404608618|gb|EKB08077.1| hypothetical protein HMPREF9716_01425 [Myroides odoratimimus CIP
103059]
Length = 357
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T+ T SAGI+ NK LAK+AS NKP Q T+ V+ L++L IKK +G K
Sbjct: 129 KIFERTQLTASAGISINKFLAKVASDYNKPNGQKTINPEEVEAFLEALEIKKFFGIGKKT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + G+ T DL S D L+E +G G + I RGI V L KS G+
Sbjct: 189 ADRMYH-FGIFTGRDLKAKSIDFLEEHFG-KAGKAYYYIVRGIHNSPVSPDRLTKSVGTE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F L + +++ L + EELS RL
Sbjct: 247 RTF--DENLSSEVYLENKLAHIVEELSLRL 274
>gi|344202523|ref|YP_004787666.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
gi|343954445|gb|AEM70244.1| DNA polymerase IV [Muricauda ruestringensis DSM 13258]
Length = 366
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 91/166 (54%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T T SAGI+ NK +AK+AS NKP Q TV V L++L I+K + GK+
Sbjct: 134 KIFDKTGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLENLDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL + S D L++ +G +G++ +N+ RGI V+ +PKS G+
Sbjct: 193 TAEKMYRLGIFTGFDLKQKSVDFLEKHFG-KSGSYYYNVVRGIHLSSVKPHRIPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + ++S L +L E ++ L L+++K T+TL
Sbjct: 252 RTF-----FENLSSEIFMLEKL-ENIASELEKRLQKSKIAGKTITL 291
>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
gi|300076398|gb|ADJ65797.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T TCS G+A NKMLAK++S ++KP T + + ++ + LP++K+ +G K L
Sbjct: 154 TSLTCSIGVAPNKMLAKISSELDKPNGLTILTPADIERRIWPLPVRKINGIGPKAAEKL- 212
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ LG+ TV DL + D L+ +G + WL +A+G+ VQ PKS +F
Sbjct: 213 SALGIDTVADLAGAAPDLLRAHFGRSYAEWLGRVAQGVDDRPVQTYSEPKSISRETTF-- 270
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
R L A + L+++ L +L +DL++ + T+ +
Sbjct: 271 ERDLHARAD-RAQLSEIFTALCVKLAADLDRKGYVGRTIGI 310
>gi|415942136|ref|ZP_11555864.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
gi|407758923|gb|EKF68687.1| DNA-directed DNA polymerase [Herbaspirillum frisingense GSF30]
Length = 350
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 4/156 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T+ TCS GIA NK+LAKL S + KP T V + + +P+ K+ +G K
Sbjct: 119 VFEATQLTCSVGIAPNKLLAKLCSDIQKPDGFTIVTMEDIPDRIWPMPVSKINGIGPKSA 178
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L + L + T+G+L ED L E++G + G WL+ ++ GI V P S
Sbjct: 179 KKL-DALAIRTIGELAACREDWLVENFGRSYGAWLYRVSHGIDDRPVVTESEPVSMSRET 237
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+F R L V ++ L + L E++ +DL++
Sbjct: 238 TF--ERDLDAVRD-RNELGAIFTRLCEQVAADLDRK 270
>gi|406892189|gb|EKD37611.1| hypothetical protein ACD_75C01070G0002 [uncultured bacterium]
Length = 370
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+ +E + T SAG++ NK LAK+AS +NKP TT+P L SLPI+K + GK
Sbjct: 132 HIFRELQLTASAGVSFNKFLAKVASDINKPNGITTIPPDKALEFLASLPIRKFHGV-GKA 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++LG+TT +L ++ ED+L +G G++ +I RGI V+ + + KS G
Sbjct: 191 TERKMHQLGITTGYELRQWREDQLIRHFG-KYGSFFHDIVRGIDNRPVEPQRIRKSIGCE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L T +N + +L+E L L + + + LTL
Sbjct: 250 TT------LATDTDDIGTINAILADLAEELDHSLGKRRIGGYNLTL 289
>gi|398832290|ref|ZP_10590451.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
gi|398223387|gb|EJN09731.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. YR522]
Length = 391
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T+ TCS GIA NK+LAKL S M KP T V + + + ++K+ +G K
Sbjct: 152 VFEATQLTCSVGIAPNKLLAKLCSDMQKPDGITIVTMDDLPSRIWPMDVRKINGIGPKST 211
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ LG+ ++G+L +ED L E +G + G WL ++ G+ V P S
Sbjct: 212 ARLEG-LGIRSIGELAACAEDWLLEHFGQSYGRWLHRVSHGLDERPVVTHSEPVSMSRET 270
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDSDSR 180
+F R L V Q L ++ L +++ +DLE+ + + L F++ D
Sbjct: 271 TF--ERDLHAVRDRQQ-LGEVFTRLCQQVAADLERKGYVCRKIGIKLRFDDFETVTRDV- 326
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 234
FP+ PL TA L + L + GVK G G A+S
Sbjct: 327 -TFPT---PLGDATAIRHAAGTCLKRIELSRSIRLLGVKASGLQRPGADAAAVS 376
>gi|433677041|ref|ZP_20509074.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
gi|430817838|emb|CCP39428.1| DNA polymerase IV [Xanthomonas translucens pv. translucens DSM
18974]
Length = 353
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+ K+ +G +
Sbjct: 128 QIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVSKVPGVGKVM 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L ELG+ TVGDL E +L+ +G + G L+ ARGI V+A +S S
Sbjct: 188 QAKL-AELGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDQRPVEADQQVQSISSE 245
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F AL L L+E+ + + +RIA T+ L
Sbjct: 246 DTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|420148930|ref|ZP_14656115.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754419|gb|EJF37809.1| ImpB/MucB/SamB family protein [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 353
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGKDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F ++ + S + L +L + ++E + L++ + T+TL
Sbjct: 238 ETF-----VENLTSEVYMLREL-DHIAEDVARRLDKQQVAGKTVTL 277
>gi|241951166|ref|XP_002418305.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
gi|223641644|emb|CAX43605.1| DNA polymerase eta, putative [Candida dubliniensis CD36]
Length = 642
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E +T SAG+A K +AKLA+G KP QT + S++ L + + + +GGKLG
Sbjct: 264 IFAELGYTTSAGLARTKQVAKLAAGFKKPDAQTIIRNSAINSFLTNFELTDVTGMGGKLG 323
Query: 63 TSLQNELGVTTVGDLL-----KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 117
S+ N++ V + + FS D ++E G G ++NI RG + E+Q+ + KS
Sbjct: 324 ESIINKINVPPQINSISFIRENFSIDSIKEKLGGELGLKVYNICRGTNAIELQSLIEVKS 383
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT 164
S K+F ++ + WL +L RL +N ++ T
Sbjct: 384 MTSTKNFTS-FSVNNLFDAYDWLKVFAGDLHNRLIDLDNENIELSST 429
>gi|417091376|ref|ZP_11956303.1| DNA polymerase IV [Streptococcus suis R61]
gi|353533248|gb|EHC02913.1| DNA polymerase IV [Streptococcus suis R61]
Length = 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMALIDCFG-RFGYDLYRKARGISNSPVKTNRVRKSIGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + LE+N++ T+ L
Sbjct: 263 -RKLLYRDEDVLKELVSLC----QRVAASLERNEKQGRTIVL 299
>gi|77412153|ref|ZP_00788476.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
gi|77161813|gb|EAO72801.1| DNA-damage-inducible protein P [Streptococcus agalactiae CJB111]
Length = 364
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LG+ T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGIYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|363582785|ref|ZP_09315595.1| DNA polymerase IV 2 [Flavobacteriaceae bacterium HQM9]
Length = 365
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++T T SAGI+ NK +AK+AS NKP Q TV + V L++L IKK + GK+
Sbjct: 133 KILQKTGLTASAGISINKFIAKVASDYNKPNGQKTVHPTEVLDFLEALDIKKFYGV-GKV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL +E L E++G +G + I RGI V K H +
Sbjct: 192 TQKKMYALGIYTGADLKTKTEAYLTENFG-KSGAHYYRIVRGIHHSAV------KPHRTR 244
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS R + + ++ + +ELSE L L ++ T+TL
Sbjct: 245 KSIGAERTFNENLASEIFMEERLKELSEELARRLTKSDVAGKTITL 290
>gi|223044002|ref|ZP_03614042.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|417906353|ref|ZP_12550143.1| DNA polymerase IV [Staphylococcus capitis VCU116]
gi|222442545|gb|EEE48650.1| DNA polymerase IV (Pol IV) [Staphylococcus capitis SK14]
gi|341598009|gb|EGS40527.1| DNA polymerase IV [Staphylococcus capitis VCU116]
Length = 356
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L +L I + +G
Sbjct: 132 IYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMNLDIGEFPGVGKASK 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ N G+ T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 192 KVMHNN-GIYTGQDLYDKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|321259275|ref|XP_003194358.1| eta DNA polymerase [Cryptococcus gattii WM276]
gi|317460829|gb|ADV22571.1| eta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 689
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 19 KMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLL 78
++++ L S KP QT + ++V L+ ++ LGGKLG ++ E TVGD+L
Sbjct: 259 ELMSNLCSAWRKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQEFDAKTVGDML 318
Query: 79 KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQH 138
S D +Q+ +G W++NI RGI EV R+ KS + KS A+ + H
Sbjct: 319 TVSLDAMQKKFG-EESIWVYNILRGIDHSEVTERVSTKSMLASKSIRP--AVTSPQQGYH 375
Query: 139 WLNQLCEELSERL 151
WL+ L EL RL
Sbjct: 376 WLSILAGELKVRL 388
>gi|255555247|ref|XP_002518660.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
gi|223542041|gb|EEF43585.1| terminal deoxycytidyl transferase rev1, putative [Ricinus communis]
Length = 1200
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 9/234 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGIA N +L++LA+ KP Q + V L+ L IK + +G L
Sbjct: 491 EIFETTGCTASAGIARNMLLSRLATRTAKPDGQCYIRPEKVDEYLNELSIKTLPGIGHVL 550
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ + V T G L S+D L + +G TG LWN +RGI V KS G+
Sbjct: 551 EEKLKKK-NVRTCGQLRLISKDSLHKDFGKKTGEMLWNYSRGIDNRLVGVIQESKSIGAE 609
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++ G R + + QH+L LC+E+S R L+ T TL + + K
Sbjct: 610 VNW-GVR-FRNLQDSQHFLLNLCKEVSLR----LQGCGVHGRTFTLKIKKRRKDAGEPTK 663
Query: 182 KFPSKSCP-LRYG-TAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
C L + T + D ++ Q ++ GSF + + G +++ L
Sbjct: 664 YMGCGDCENLSHSMTVPVATDDVDVLQRIAKQLFGSFNLDVKEIRGVGLQVSKL 717
>gi|306832183|ref|ZP_07465337.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|386338579|ref|YP_006034748.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|304425622|gb|EFM28740.1| DNA-directed DNA polymerase IV [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|334281215|dbj|BAK28789.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 381
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T + + L LPI+K +G +
Sbjct: 161 KEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKKLPIEKFYGVGKRSVEK 220
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ++LGV T DLL+ E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 221 L-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRIRKSIGSERTY 278
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 169
+ + + + E+S +R+ L++N ++ T+ L
Sbjct: 279 ---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 317
>gi|88800716|ref|ZP_01116275.1| DNA polymerase IV [Reinekea blandensis MED297]
gi|88776580|gb|EAR07796.1| DNA polymerase IV [Reinekea sp. MED297]
Length = 365
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++++ET T SAGIA NK LAK+AS KP ++ +V L SLP+KK+ +G K
Sbjct: 129 EIVQETGITVSAGIAPNKFLAKVASEWRKPNGLYSISPEAVDEFLSSLPLKKINGVGSKF 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L E G+ T GD+L++S +L + +G +G WL+ ARGI V R KS
Sbjct: 189 SQKLA-EHGLHTCGDVLRWSLPRLTQYFG-KSGLWLYQRARGIDHRPVGVRSDRKSLSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCS 153
+F A ++ Q L L + L+ RL +
Sbjct: 247 HTFDTDLAGESACLTQ--LTPLLDTLNRRLAA 276
>gi|33592070|ref|NP_879714.1| DNA polymerase IV [Bordetella pertussis Tohama I]
gi|33596271|ref|NP_883914.1| DNA polymerase IV [Bordetella parapertussis 12822]
gi|33602069|ref|NP_889629.1| DNA polymerase IV [Bordetella bronchiseptica RB50]
gi|384203372|ref|YP_005589111.1| DNA polymerase IV [Bordetella pertussis CS]
gi|408415972|ref|YP_006626679.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|410419849|ref|YP_006900298.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|410473391|ref|YP_006896672.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|412338221|ref|YP_006966976.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|427814305|ref|ZP_18981369.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|427821228|ref|ZP_18988291.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|427821749|ref|ZP_18988811.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
gi|33566040|emb|CAE36936.1| DNA-damage-inducible protein p [Bordetella parapertussis]
gi|33571714|emb|CAE41211.1| DNA-damage-inducible protein p [Bordetella pertussis Tohama I]
gi|33576507|emb|CAE33585.1| DNA-damage-inducible protein p [Bordetella bronchiseptica RB50]
gi|332381486|gb|AEE66333.1| DNA polymerase IV [Bordetella pertussis CS]
gi|401778142|emb|CCJ63525.1| DNA-damage-inducible protein p [Bordetella pertussis 18323]
gi|408443501|emb|CCJ50161.1| DNA-damage-inducible protein p [Bordetella parapertussis Bpp5]
gi|408447144|emb|CCJ58816.1| DNA-damage-inducible protein p [Bordetella bronchiseptica MO149]
gi|408768055|emb|CCJ52813.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 253]
gi|410565305|emb|CCN22860.1| DNA-damage-inducible protein p [Bordetella bronchiseptica 1289]
gi|410572228|emb|CCN20497.1| DNA-damage-inducible protein p [Bordetella bronchiseptica D445]
gi|410587014|emb|CCN02044.1| DNA-damage-inducible protein p [Bordetella bronchiseptica Bbr77]
Length = 361
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAG+A NK LAK+AS NKP + S V L LP++K+ +G +
Sbjct: 132 QIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVIKPSRVLDFLQPLPVRKVPGVGKVM 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
L+ +LG+ TVGDL + S +L++ +G G L+ +ARGI VQA
Sbjct: 192 QARLE-QLGIQTVGDLSRHSVAELEQRFG-RYGVRLYELARGIDERAVQA 239
>gi|357418538|ref|YP_004931558.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
gi|355336116|gb|AER57517.1| DNA polymerase IV [Pseudoxanthomonas spadix BD-a59]
Length = 366
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ + T T SAGIA NK LAK+AS NKP Q + + V+ L L + ++ + GK+
Sbjct: 128 QIFETTGLTASAGIAPNKFLAKIASDWNKPNGQYVIKPAQVEAFLTPLKVGRIPGV-GKV 186
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
ELGV TVGDL +F+ D+LQ +G G L+ ARGI VQ
Sbjct: 187 AERKLAELGVATVGDLRRFTLDELQLRFG-RFGAALYRRARGIDERPVQ 234
>gi|358372217|dbj|GAA88822.1| DNA damage repair protein Mus42 [Aspergillus kawachii IFO 4308]
Length = 1166
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET S GI N +LAK+A KPA Q + +V + +L ++ + +G LG
Sbjct: 518 VKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDYIGNLTVQDLPGVGYSLG 577
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L++ LGV V D+ + + D+L S G TG +W ARGI EV +L KS +
Sbjct: 578 TKLED-LGVKIVKDVRELTRDRLTTSLGPKTGIKIWEYARGIDRTEVGNEVLRKSVSAEV 636
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 637 NW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 673
>gi|311105525|ref|YP_003978378.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
gi|310760214|gb|ADP15663.1| impB/mucB/samB family protein [Achromobacter xylosoxidans A8]
Length = 359
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K+ + GK+
Sbjct: 131 QIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPAKVLAFLEPLPVRKVPGV-GKV 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 190 TQARLEQLGIHTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 237
>gi|227539640|ref|ZP_03969689.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240553|gb|EEI90568.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
33300]
Length = 350
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T SAG++ NK +AK+AS +NKP T + S V ++ LPI+K + GK+
Sbjct: 123 EIQEELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEHLPIEKFFGV-GKV 181
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
S +LG+ D+ +++++ L +G TG + +NI RGI VQ KS
Sbjct: 182 TASKMKKLGIYRGADMKQWTQEALTRHFG-KTGEFFYNIVRGIDNRPVQPNRQTKSISVE 240
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
+F + +A +Q L + +ELS RL L + T+TL
Sbjct: 241 DTFA-----QDIADIQ-VLEDILKELSVRLVKRLNAKELAGKTVTLKV 282
>gi|440733826|ref|ZP_20913497.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
gi|440358515|gb|ELP95866.1| DNA polymerase IV [Xanthomonas translucens DAR61454]
Length = 353
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+ K+ +G +
Sbjct: 128 QIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVSKVPGVGKVM 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L ELG+ TVGDL E +L+ +G + G L+ ARGI V+A +S S
Sbjct: 188 QAKL-AELGIVTVGDLRTHGEVELEARFG-SFGLRLYQRARGIDQRPVEADQQVQSISSE 245
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F AL L L+E+ + + +RIA T+ L
Sbjct: 246 DTFAEDLALDA-------LEPAIRLLAEKTWTATRRTERIARTVVL 284
>gi|288906138|ref|YP_003431360.1| DNA polymerase IV [Streptococcus gallolyticus UCN34]
gi|288732864|emb|CBI14443.1| putative DNA polymerase IV [Streptococcus gallolyticus UCN34]
Length = 365
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T + + L LPI+K +G +
Sbjct: 145 KEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLKKLPIEKFYGVGKRSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ++LGV T DLL+ E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 169
+ + + + E+S +R+ L++N ++ T+ L
Sbjct: 263 ---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 301
>gi|58268086|ref|XP_571199.1| eta DNA polymerase [Cryptococcus neoformans var. neoformans JEC21]
gi|57227433|gb|AAW43892.1| eta DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 690
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 11 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 70
C G ++++ L S KP QT + ++V L+ ++ LGGKLG ++ + G
Sbjct: 255 CMGG----ELMSNLCSAWKKPNNQTILRTAAVPAFLNGRDFTDIRSLGGKLGAAIAQQFG 310
Query: 71 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 130
TVGD+L S D++Q +G W++NI RGI EV R+ KS + KS A+
Sbjct: 311 AKTVGDMLTVSLDEMQRKFG-EESIWVYNILRGIDHSEVTDRVATKSMLASKSIRP--AV 367
Query: 131 KTVASVQHWLNQLCEELSERL 151
+ WL+ L EL+ RL
Sbjct: 368 TSPQQGHQWLSILAGELNVRL 388
>gi|225075588|ref|ZP_03718787.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
gi|224953010|gb|EEG34219.1| hypothetical protein NEIFLAOT_00602 [Neisseria flavescens
NRL30031/H210]
Length = 352
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+ + GK+
Sbjct: 130 EIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKIPGV-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 189 TLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|134078076|emb|CAK40159.1| unnamed protein product [Aspergillus niger]
Length = 1165
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET S GI N +LAK+A KPA Q + +V + +L ++ + +G LG
Sbjct: 517 VKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLG 576
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L++ LGV V D+ + D+L S G TG +W ARGI EV +L KS +
Sbjct: 577 TKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEV 635
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 636 NW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|317031843|ref|XP_001393536.2| DNA damage repair protein Mus42 [Aspergillus niger CBS 513.88]
Length = 1155
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET S GI N +LAK+A KPA Q + +V + +L ++ + +G LG
Sbjct: 517 VKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLG 576
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L++ LGV V D+ + D+L S G TG +W ARGI EV +L KS +
Sbjct: 577 TKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEV 635
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 636 NW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|429752207|ref|ZP_19285078.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
gi|429177425|gb|EKY18750.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 326 str.
F0382]
Length = 356
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET T SAGI+ NK +AK+AS +KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFNETGLTASAGISINKFIAKIASDYHKPNGQTTITQAEVQDFLDKLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F L + ++ L ++ E++ RL K I TL + S F
Sbjct: 238 ETF--AENLTSEVYMERELERIAEDVVRRLKKQQVAGKTI--TLKIKYSDF 284
>gi|256426123|ref|YP_003126776.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
gi|256041031|gb|ACU64575.1| DNA-directed DNA polymerase [Chitinophaga pinensis DSM 2588]
Length = 371
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + T SAG++ NK +AK+AS +NKP T + SS++ ++ LP++K + GK+
Sbjct: 142 ELQLTASAGVSVNKFVAKIASDLNKPDGLTFIGPSSIESFMEKLPVEKFFGV-GKVTADK 200
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+G+ T DL + SE+ L+ +G G + + I RGI EVQ KS G+ +F
Sbjct: 201 MKRMGLHTGADLKRLSENDLKTHFG-KVGAFYYRIVRGIDEREVQPHRETKSLGAEDTF- 258
Query: 126 GPRALKTVASVQHWLNQLCEELSERL 151
P L + L ++ + ERL
Sbjct: 259 -PYDLTRTEEMNAELEKIAVTVYERL 283
>gi|224007068|ref|XP_002292494.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972136|gb|EED90469.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1538
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++ FT SAGI+ +K++AKL + KP Q + ++ ++D I+K + LGGKLG
Sbjct: 339 VFQKLGFTLSAGISTSKLVAKLGATYGKPNGQAVIYPVAIPKVMDETQIRKARMLGGKLG 398
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARL--LPKSHGS 120
+ + + + + + + + G +G W+++ RGI EEV+ L LPKS +
Sbjct: 399 KKV-GSMNIDADDVIRSYIDKSISFAVGDESGRWVFDACRGICLEEVKPTLNVLPKSITA 457
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS G + + + W+ L ++ +R+ D +N R+ + TL
Sbjct: 458 FKSLRG--SAGSYPELDKWVALLASDIMKRVQLDTSRNHRVPKSCTL 502
>gi|359797341|ref|ZP_09299927.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
gi|359364842|gb|EHK66553.1| DNA polymerase IV [Achromobacter arsenitoxydans SY8]
Length = 365
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAG+A NK LAK+AS NKP V + V L+ LP++K+ + GK+
Sbjct: 137 QIREETGLTASAGVAPNKFLAKIASDWNKPDGLFVVRPNKVLAFLEPLPVRKVPGV-GKV 195
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ +LG+ TVGDL S +L+ +G G L+ +ARGI EVQ
Sbjct: 196 TQARLEQLGIQTVGDLATHSAQELEHYFG-RYGRRLYELARGIDEREVQ 243
>gi|358052928|ref|ZP_09146734.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
gi|357257587|gb|EHJ07838.1| DNA polymerase IV [Staphylococcus simiae CCM 7213]
Length = 356
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + +++V ++ SL I + GK
Sbjct: 132 ILEQTALTASAGVSYNKFLAKLASGMNKPNGMTVIDYNNVHDIIMSLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ + T DL + SE +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNDIYTGQDLYQKSEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRIRKSIGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F V + L ++ ELS + L + ++ A T+T+ ++
Sbjct: 250 TFA-----TDVNDDEQILRKVW-ELSGKTAERLNELQKSAKTVTVKIKTYQFETY----- 298
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREF 212
SK LR + + D +N+ A E
Sbjct: 299 --SKQTSLR-DSVNTENDIYNIAYALYNEL 325
>gi|319638499|ref|ZP_07993261.1| DNA polymerase IV [Neisseria mucosa C102]
gi|317400248|gb|EFV80907.1| DNA polymerase IV [Neisseria mucosa C102]
Length = 352
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+ + GK+
Sbjct: 130 EIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPPKIMAFLESLPLGKIPGV-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 189 TLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|365905357|ref|ZP_09443116.1| DNA polymerase IV [Lactobacillus versmoldensis KCTC 3814]
Length = 357
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+++KET TCS GI++NK LAK+AS KP +T + + + L +PI+K +G
Sbjct: 126 RIVKETHLTCSVGISYNKFLAKMASDYRKPFGRTLILGAYAEDFLKPIPIEKFNGIGKTT 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L +E+ + T DL +D +++G G ++ GI V+ + KS G
Sbjct: 186 QKKL-HEMNIYTGADLQNLDQDTFLDTFG-KMGYVMYRRVHGIDDSPVEGNRIRKSIGRE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+++ R + A + H L +L + +S +DL++ ++ T+ L + SD D+
Sbjct: 244 RTY--DRNILYSADIHHELKKLAKMVS----NDLKKRRQHGKTVVL---KLRDSDFDTVT 294
Query: 182 K 182
K
Sbjct: 295 K 295
>gi|350639910|gb|EHA28263.1| hypothetical protein ASPNIDRAFT_43424 [Aspergillus niger ATCC 1015]
Length = 1165
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET S GI N +LAK+A KPA Q + +V + +L ++ + +G LG
Sbjct: 517 VKKETGCAVSVGIGGNILLAKVALRKAKPAGQFQLKPDAVLDFIGNLTVQDLPGVGYSLG 576
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L++ LGV V D+ + D+L S G TG +W ARGI EV +L KS +
Sbjct: 577 TKLED-LGVKLVKDVRDLTRDRLTTSLGPKTGVKIWEYARGIDRTEVGNEVLRKSVSAEV 635
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
++ G R + + + ++ LC+EL RL +L + +++
Sbjct: 636 NW-GIRFVNQTQA-EDFVRSLCQELHRRLVENLVKGQQL 672
>gi|429747821|ref|ZP_19281066.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
gi|429162315|gb|EKY04645.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 380 str.
F0488]
Length = 353
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 238 ETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|293604743|ref|ZP_06687143.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
gi|292816912|gb|EFF75993.1| DNA-directed DNA polymerase IV [Achromobacter piechaudii ATCC
43553]
Length = 360
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS NKP Q + + V L LP++K+ + GK+
Sbjct: 132 QIREETGLTASAGIAPNKFLAKIASDWNKPDGQFVIRPTKVLEFLQPLPVRKVPGV-GKV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ +LG+ TVGDL S ++L +G G L+ +ARGI EVQ
Sbjct: 191 TQARLEQLGIHTVGDLATHSLEELAHYFG-RYGRRLYELARGIDEREVQ 238
>gi|149371089|ref|ZP_01890684.1| putative DNA polymerase [unidentified eubacterium SCB49]
gi|149355875|gb|EDM44433.1| putative DNA polymerase [unidentified eubacterium SCB49]
Length = 369
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 2 QVLKE-TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
Q +KE T SAGI+ NK +AK+AS +NKP Q TVP V L+ L IKK +G
Sbjct: 134 QKIKERTGLNASAGISINKFIAKVASDINKPNGQKTVPPEEVIPFLEVLDIKKFYGVGKV 193
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ + G+ T DL S + L E++G +G + +NI RGI EV+ KS +
Sbjct: 194 MKEKMYRH-GIYTGLDLKGKSIEFLSENFG-KSGAYYYNIVRGIHNSEVKPSRTRKSLAA 251
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
++F + +AS L +L +SE + L+++K T+TL K SD
Sbjct: 252 ERTFS-----ENIASEIFMLEKLA-PISEEVERRLKKSKVAGKTVTL-----KIKYSDFT 300
Query: 181 KKFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 218
+ SK+ PL + +T LFQ G++ + G+
Sbjct: 301 LQTRSKTLPLYISDKNLIMETVTELLFQEGMKNSVRLLGI 340
>gi|261381373|ref|ZP_05985946.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
gi|284795651|gb|EFC50998.1| DNA-directed DNA polymerase [Neisseria subflava NJ9703]
Length = 352
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGIA NK LAK+AS KP Q +P + L+SLP+ K+ + GK+
Sbjct: 130 EIFEETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKIMAFLESLPLGKIPGV-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
N LG+ T GDL +F +L +G G L+++ARGI V+A
Sbjct: 189 TLKKMNALGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGIDERPVKA 237
>gi|344205893|ref|YP_004791034.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
gi|343777255|gb|AEM49808.1| DNA polymerase IV [Stenotrophomonas maltophilia JV3]
Length = 364
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L SLP+ ++ +G +
Sbjct: 131 QIREETRLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLSLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 249 DTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|429755769|ref|ZP_19288401.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
gi|429172746|gb|EKY14286.1| putative DNA polymerase IV [Capnocytophaga sp. oral taxon 324 str.
F0483]
Length = 353
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 93/166 (56%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFQQTGLTASAGISVNKFIAKIASDYRKPNGQTTITEAEVQDFLDRLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S + L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGRDLREKSLEFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + S + L +L + ++E + L++ + T+TL
Sbjct: 238 ETFA-----ENLTSEVYMLREL-DHIAEDVVRRLDKQQVAGKTVTL 277
>gi|365961688|ref|YP_004943255.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
gi|365738369|gb|AEW87462.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
columnare ATCC 49512]
Length = 358
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+++ E T SAGI+ NK +AK+AS NKP Q T+ V L+SL IKK + GK+
Sbjct: 132 RIVDEVGLTASAGISINKFVAKIASDYNKPNGQKTIHPDDVTLFLESLDIKKFYGI-GKV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LG+ T DL + + L+E +G +GT +++ RGIS V K + +
Sbjct: 191 TTEKMYQLGIYTGQDLKSKTIEYLEEHFG-KSGTHYYHLVRGISNSPV------KPNRAS 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
KS T + + ++ + E +++ L L+++K T+TL K SD +
Sbjct: 244 KSVAAEHTFYTNLTSEIFMEEKLERIADELAKRLQKHKLSGKTVTL-----KIKYSDFSQ 298
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 299 QTRSKTLP 306
>gi|306834307|ref|ZP_07467424.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|336065017|ref|YP_004559876.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
gi|304423480|gb|EFM26629.1| DNA-directed DNA polymerase IV [Streptococcus bovis ATCC 700338]
gi|334283217|dbj|BAK30790.1| DNA polymerase IV [Streptococcus pasteurianus ATCC 43144]
Length = 381
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T + + L+ LPI+K +G +
Sbjct: 161 QEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPIEKFYGVGKRSVEK 220
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ++LGV T DLL+ E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 221 L-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRIRKSIGSERTY 278
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 169
+ + + + E+S +R+ L++N ++ T+ L
Sbjct: 279 ---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 317
>gi|325979102|ref|YP_004288818.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|325179030|emb|CBZ49074.1| DNA polymerase IV [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 365
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T + + L+ LPI+K +G +
Sbjct: 145 QEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPIEKFYGVGKRSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ++LGV T DLL+ E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HQLGVFTGADLLEIPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 169
+ + + + E+S +R+ L++N ++ T+ L
Sbjct: 263 ---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 301
>gi|258546266|ref|ZP_05706500.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
gi|258518488|gb|EEV87347.1| DNA-directed DNA polymerase [Cardiobacterium hominis ATCC 15826]
Length = 353
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 109/229 (47%), Gaps = 18/229 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L T T SAG+++NKMLAK+AS +NKP + + + SL I++ + GK
Sbjct: 131 EILAATGLTASAGVSYNKMLAKIASDLNKPNGIAVITPAQGADFVASLAIERFHGI-GKA 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + LG+ T DL + S + L+ +G G + +++ARGI V+A KS GS
Sbjct: 190 TAAHMHALGIQTGADLRRLSRETLRHEFG-KHGDFYYDMARGIDLRPVEAARERKSIGSE 248
Query: 122 KSFPGPRALKTVASV-QHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
+F R ++ A++ Q L Q E +D+++ HTLTL K SD
Sbjct: 249 TTF--ARDIEDHAALYQALLAQNREAF-----ADVQRRHLQPHTLTL---KLKYSDFSQT 298
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR 229
+ + S P +ED L+E + V+ G YSG R
Sbjct: 299 TRRQTLSTPF-----AREEDAHYWIARLLQEIAPARPVRLVGITYSGLR 342
>gi|330718299|ref|ZP_08312899.1| DNA-damage-inducible protein P [Leuconostoc fallax KCTC 3537]
Length = 361
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LK T T S G++HNK+LAKL S NKP T + S++ +D+LPI K + +G K
Sbjct: 138 EILKTTHLTSSVGVSHNKLLAKLGSNYNKPNGVTVINHSNMLEFIDALPIDKFRGVGQKT 197
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L +L + L + S++ L+ +G G L+ ARG++ EV+ + +S G
Sbjct: 198 KEKL-IQLDIHDGRQLRQLSQEMLRAQFG-KFGEHLYLQARGMNFSEVKWQRQRQSVGKE 255
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L T A VQ+ QL +++ L Q K + TL +
Sbjct: 256 TTF--DRFLHTEAQVQNAFGQLA----DKMIISLRQQKVVGRTLNI 295
>gi|225010252|ref|ZP_03700724.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
gi|225005731|gb|EEG43681.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-3C]
Length = 365
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LK T SAGI+ NK +AK+AS +NKP Q T+P V L++L I+K + GK+
Sbjct: 134 EILKLTGLHASAGISINKFVAKIASDINKPNGQKTIPPEEVLSFLENLDIRKFFGI-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL SED L+ +G +G + + RG+ EV + KS G+
Sbjct: 193 TADKMYGLGIFTGADLKLKSEDFLETHFG-KSGRYFYRAVRGVHHSEVSPERIQKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F + + ++ + L EELS+RL ++K T+TL K +D +++
Sbjct: 252 RTF--NENISSEVFLEGKIIALAEELSKRLG----RSKLSGKTITLK---LKYADFNTQT 302
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 303 R--SKTLP 308
>gi|242371796|ref|ZP_04817370.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
gi|242350497|gb|EES42098.1| DNA polymerase IV [Staphylococcus epidermidis M23864:W1]
Length = 356
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I + GK
Sbjct: 132 IYEQTQLTASAGVSYNKFLAKLASGMNKPNGMTVIDYQNVHEILMHLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKVMHDNGIFTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDNNEVKATRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|374338723|ref|YP_005095440.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
gi|372284840|emb|CCF03144.1| DNA polymerase IV [Streptococcus macedonicus ACA-DC 198]
Length = 365
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T + + L+ LPI+K +G +
Sbjct: 145 QEVHLTCSAGVSYNKFLAKLASDFEKPKGLTLILPEDAQDFLEKLPIEKFYGVGKRSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ++LGV T DLL+ E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HQLGVFTGADLLEMPEMTLIDLFG-RFGYDLYRKARGISNSPVKSNRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHA 169
+ + + + E+S +R+ L++N ++ T+ L
Sbjct: 263 ---------GKLLYEEDDVKSEISKNAQRVVDTLQRNHKVGRTIVLKV 301
>gi|399021125|ref|ZP_10723244.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
gi|398093109|gb|EJL83499.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Herbaspirillum sp. CF444]
Length = 241
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T +CS GIA NK+LAK+ S + KP T + V + LP +K+ +G K L
Sbjct: 5 TNLSCSIGIAPNKLLAKICSDLEKPNGLTILTMDDVPTRIWPLPARKINGIGPKAAEKL- 63
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
LG+ TVGDL + LQE +G + WL N+A+GI V PKS +F
Sbjct: 64 TALGIVTVGDLARADAGLLQEHFGRSYSAWLGNVAQGIDDRPVSTSSEPKSISRETTF-- 121
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
R L + L+ + L ER+ DL + + T+ +
Sbjct: 122 ERDLHARHD-REKLSGIFTALCERVADDLHRKGYLGRTIGI 161
>gi|213963495|ref|ZP_03391749.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
gi|213953903|gb|EEB65231.1| DNA polymerase IV [Capnocytophaga sputigena Capno]
Length = 356
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS +KP QTT+ + V+ LD L ++K + GK+
Sbjct: 120 RIFNEIGLTASAGISVNKFIAKIASDYHKPNGQTTITQAEVQDFLDKLDVRKFYGI-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ DL + S L+ ++G N+G + + ++RGI EVQ + KS G+
Sbjct: 179 TAEKMYQLGIFKGKDLREKSLAFLERNFG-NSGHYYYELSRGIHRSEVQPFRIRKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F A + V ++ + E ++E + LE+ + T+TL
Sbjct: 238 ETF----AENLTSEV--YMERELERIAEDVVRRLEKQQVAGKTITL 277
>gi|409122245|ref|ZP_11221640.1| DNA polymerase IV 2 [Gillisia sp. CBA3202]
Length = 366
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T SAGI+ NK +AK+AS +NKP Q TV V+ L+ L I+K + GK+
Sbjct: 134 KIKEKTGLNASAGISINKFIAKVASDINKPNGQKTVNPEEVEEFLEQLQIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ L SE+ L E++G +G + +N+ RGI EV+A + KS G+
Sbjct: 193 TAEKMYRLGIFKGIQLKDKSEEFLTENFG-KSGKYYYNVVRGIHNSEVKADRIRKSLGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F + +AS + ++ + E ++E + L+ +K T+TL K SD
Sbjct: 252 RTFS-----ENIAS-EIFMMERLENIAEEIERRLKGSKVAGKTVTL-----KIKYSDFTL 300
Query: 182 KFPSKSCPLRYGTAKIQEDTFN--LFQAGLREFLGSFGV 218
+ SK+ P + + DT LFQ ++ + G+
Sbjct: 301 QTRSKTLPYYIASKAVILDTAKELLFQEKMKNSVRLLGI 339
>gi|422874487|ref|ZP_16920972.1| DNA polymerase IV [Clostridium perfringens F262]
gi|380304560|gb|EIA16848.1| DNA polymerase IV [Clostridium perfringens F262]
Length = 359
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L+++ E +SE LC
Sbjct: 248 KEITLREDIEDIKEMIEILDKIAERVSESLC 278
>gi|365853728|ref|ZP_09393993.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
gi|363711886|gb|EHL95592.1| putative DNA polymerase IV [Lactobacillus parafarraginis F0439]
Length = 366
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LK+T+ TCS G+++NK LAK AS KP T + L LPI+K + +G K
Sbjct: 136 EILKQTKLTCSVGVSYNKFLAKEASDYAKPFGLTVIEPKDAIEFLKRLPIEKFRGVGKKT 195
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ ++LG+ DL+++S+ L + +G G L+ ARGI V+ + KS G
Sbjct: 196 VPKM-HDLGINDGADLIQWSQMDLIKHFG-KFGYVLYERARGIDKRPVEYARVRKSVGKE 253
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F GP Q ++ + ++E + ++++Q K+ TL L
Sbjct: 254 RTF-GPE-----LENQSQVDDQLKHIAEMVAAEMQQKKKHGKTLVL 293
>gi|326800591|ref|YP_004318410.1| DNA polymerase IV [Sphingobacterium sp. 21]
gi|326551355|gb|ADZ79740.1| DNA polymerase IV [Sphingobacterium sp. 21]
Length = 354
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG++ NK +AK+AS MNKP T + S ++ +++LPI+K + GK+
Sbjct: 135 ELHLTASAGVSTNKFVAKIASDMNKPDGLTFIGPSRIEAFIEALPIQKFYGI-GKVTAKK 193
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
N L + DL K S+D L +G G + +NI RGI VQ KS G+ +F
Sbjct: 194 MNSLQIYKGADLKKLSKDHLLNLFG-KVGNFYYNIVRGIDERPVQTFRELKSIGAEDTFT 252
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ Q + +L + +++R+ LE + + TLTL
Sbjct: 253 S-----DLMEEQELIMEL-KLIAQRVVKRLEAKQVLGSTLTL 288
>gi|399030722|ref|ZP_10731053.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
gi|398071121|gb|EJL62391.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Flavobacterium sp. CF136]
Length = 360
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 13/189 (6%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+++ E T SAGI+ NK +AK+AS NKP Q TV V L+ LPI+K + GK
Sbjct: 133 LRIFNEVGITASAGISVNKFVAKIASDYNKPNGQKTVNPDEVIPFLEELPIRKFYGV-GK 191
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ T +LG+ T DL S + L++ +G +G + +N+ RGI EV+A + KS +
Sbjct: 192 VTTEKMYQLGIFTGLDLKSKSVEFLEKHFG-KSGGFYFNVVRGIHNSEVKASRITKSVAA 250
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
+F ++S L QL E+++ L L++ + T+TL K SD
Sbjct: 251 EHTFD-----VNLSSEIFMLEQL-EKIAVSLEKRLKKYNILGKTVTL-----KIKYSDFT 299
Query: 181 KKFPSKSCP 189
++ SK+ P
Sbjct: 300 QQTRSKTLP 308
>gi|332527775|ref|ZP_08403814.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
gi|332112171|gb|EGJ12147.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2]
Length = 432
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T +CS G+ NK+LAK+AS ++KP + V + + + LP++++ +G K G
Sbjct: 162 VRRTTGLSCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIWPLPVRRINGIGPKAG 221
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LGV T+GDL LQE +G + G WL + A G V P S
Sbjct: 222 AKLA-ALGVATIGDLATRERAWLQEHFGRSYGAWLHDAAHGQDDRPVVTHSEPVSVSRET 280
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L V + L + +L+ER+ +DL++ A T+ +
Sbjct: 281 TF--ERDLHAVQD-RARLTAVFTDLAERVAADLQRKGYAARTIGI 322
>gi|366161628|ref|ZP_09461490.1| DNA polymerase IV [Escherichia sp. TW09308]
gi|432371030|ref|ZP_19614094.1| DNA polymerase IV [Escherichia coli KTE11]
gi|430900243|gb|ELC22262.1| DNA polymerase IV [Escherichia coli KTE11]
Length = 351
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K+ L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKYDLVMLLKRFG-KFGHILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|213410204|ref|XP_002175872.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
gi|212003919|gb|EEB09579.1| sister chromatid cohesion protein Eso1 [Schizosaccharomyces
japonicus yFS275]
Length = 884
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +TCSAGI+ N ML+K+ S NKP +QT + S V L + + +++ GGK
Sbjct: 229 EIFNTLGYTCSAGISRNAMLSKILSSKNKPNKQTVLLNSMVDHYLADVRLSELRLFGGKY 288
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G L +L + D+ D+L G +WN+ GI E+ +S S
Sbjct: 289 GEELGKKLNAEYIKDIRAIPMDELIRILGDRDAQVVWNVCNGIDNSEITNVNNTQSMLSA 348
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
K+F + LK+ W +L R D+EQ KR
Sbjct: 349 KNFLRSK-LKSSEEAMKWFRVFASDLMSRYM-DVEQIKR 385
>gi|120437709|ref|YP_863395.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
gi|117579859|emb|CAL68328.1| DNA polymerase IV 2 [Gramella forsetii KT0803]
Length = 363
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K + GK+
Sbjct: 131 RIKEKTGLNASAGISINKFIAKIASDVNKPNGQKTVQPEEVIAFLEELDIRKFYGV-GKV 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL SE+ L E +G +GT +N+ RGI EV+ + KS G+
Sbjct: 190 TAEKMYRLGIFTGKDLKLKSEEYLTEHFG-KSGTHFYNVVRGIHLSEVKPHRIRKSLGAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + ++S L +L E ++E + L ++K T+TL
Sbjct: 249 RTFN-----ENISSEIFMLERL-ENIAEEIERRLTKSKVAGKTITL 288
>gi|254422468|ref|ZP_05036186.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
gi|196189957|gb|EDX84921.1| ImpB/MucB/SamB family [Synechococcus sp. PCC 7335]
Length = 371
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + + T SAG++ NK LAK+AS +NKP + + K ++ L I+ +G
Sbjct: 148 RIRTDLQLTASAGVSINKFLAKIASDLNKPDGLSFISPEEAKTFIEQLRIEDFYGVGPAT 207
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +++ LG+ T DL +++ +L +++G G++ + +AR V + KS G+
Sbjct: 208 ATKMKS-LGIHTGADLKTWTQAELTQTFG-KVGSYYYRVARAEDNRPVNPNRIRKSIGAE 265
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+SF R L + ++ L + E+S+R L++NKR HTLTL + + D+ +R
Sbjct: 266 RSF--FRDLSQIEDMETALANIATEVSQR----LQKNKRQGHTLTLKIK-YDNYDTITRS 318
Query: 182 K 182
+
Sbjct: 319 R 319
>gi|423132540|ref|ZP_17120190.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
gi|371639611|gb|EHO05227.1| hypothetical protein HMPREF9714_03590 [Myroides odoratimimus CCUG
12901]
Length = 356
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
M++L+ T T S GI+ NK LAK+AS NKP Q T+ V L+ L IKK +G K
Sbjct: 128 MKILERTGLTASVGISINKFLAKIASDYNKPNGQKTIEPDEVINFLEELEIKKFFGIGKK 187
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ + LG+ T DL S + L E +G G ++I RG+S V+ KS G+
Sbjct: 188 TADRMYH-LGIFTGKDLKAKSVEFLTEHFG-KAGQIYYDIVRGLSNSPVRPNRTIKSVGT 245
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F L + ++ L+ L EELS RL
Sbjct: 246 ERTF--DENLSSEVFIETKLDILVEELSLRL 274
>gi|424796310|ref|ZP_18222059.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422795030|gb|EKU23796.1| DNA polymerase IV [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 353
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q + V L LP+ K+ +G +
Sbjct: 128 QIREETALTASAGIAPNKFLAKIASDWRKPDGQFVIRPHQVDAFLTPLPVSKVHGVGKVM 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L LG+ TVGDL E +L+ +G + G L+ ARGI V+A +S S
Sbjct: 188 QAKL-AALGIVTVGDLRTHGEAELEARFG-SFGLRLYQRARGIDPRPVEANQQVQSISSE 245
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F AL +A L+E+ + + +RIA T+ L
Sbjct: 246 DTFAEDLALDALAPA-------IRLLAEKTWTATRRTERIARTVVL 284
>gi|335042079|ref|ZP_08535106.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
gi|333788693|gb|EGL54575.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Methylophaga aminisulfidivorans MP]
Length = 362
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ET T SAG+++NK LAK+AS M+KP + + + +LP+ K +G
Sbjct: 132 EILQETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRPEQGEAFVAALPVGKFHGIGPAT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T + N LG+ T DL + S +L E +G G + +NIAR I V+++ + KS G
Sbjct: 192 ETKMHN-LGIHTGKDLREKSLTELTERFG-KAGQYYYNIARAIDERPVRSQRIRKSLGKE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + S+ +L +L+ER+ L + A T+T+
Sbjct: 250 TTFA-----EDIHSIPELTAKLL-DLAERVFESLVKQNLKARTITV 289
>gi|395802471|ref|ZP_10481724.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
gi|395435712|gb|EJG01653.1| DNA-directed DNA polymerase [Flavobacterium sp. F52]
Length = 360
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 21/192 (10%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS NKP Q TV V+ L+ LPI+K + GK+
Sbjct: 134 RIFNEVGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFLEDLPIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LG+ T DL S + L++ +G +G + +++ RGI EV++ + KS +
Sbjct: 193 TTEKMYQLGIFTGTDLKSKSLEFLEKHFG-KSGAFYYHVVRGIHNSEVKSSRIAKSVAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRI---AHTLTLHASAFKSSDS 177
+F ++S + QL ER+ S LE+ KR T+TL K S
Sbjct: 252 HTFD-----VNLSSEIFMMEQL-----ERIASSLEKRLKRYNVSGKTITL-----KIKYS 296
Query: 178 DSRKKFPSKSCP 189
D ++ SK+ P
Sbjct: 297 DFSQQTRSKTLP 308
>gi|417903965|ref|ZP_12547796.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
gi|341848294|gb|EGS89459.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21269]
Length = 356
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDKGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|295673426|ref|XP_002797259.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282631|gb|EEH38197.1| DNA polymerase IV [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1160
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V+ + L +K + + LG
Sbjct: 510 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLG 569
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++ KS +
Sbjct: 570 GKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEI 628
Query: 123 SFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 161
S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 629 SW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 665
>gi|168209362|ref|ZP_02634987.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
gi|170712467|gb|EDT24649.1| DNA polymerase IV [Clostridium perfringens B str. ATCC 3626]
Length = 359
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K +G
Sbjct: 132 RIFKEVALTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L ++ E +SE LC
Sbjct: 248 KEITLREDIEDIDEMIEILERIAERVSESLC 278
>gi|336394740|ref|ZP_08576139.1| DNA-damage-inducible protein P [Lactobacillus farciminis KCTC 3681]
Length = 337
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 6/173 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+++KET TCS GI++NK LAK+AS KP +T + K L +PI+K +G +
Sbjct: 106 RIVKETNLTCSVGISYNKFLAKMASDYRKPFGRTIILGKYAKEFLKPIPIEKFNGIGKAM 165
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L +E+ + T DL K +DK + +G G ++ GI V+ KS G
Sbjct: 166 QEKL-HEMDIYTGEDLQKLDQDKFLQRFG-KMGYVIYKRVHGIDDAPVEGHRARKSIGRE 223
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
+++ R L T + L+ L E +S+ L + K + L L S F++
Sbjct: 224 RTY--NRNLVTEEQIYRELDFLAELVSQDLKKKRQHGKTVV--LKLRNSDFET 272
>gi|386716938|ref|YP_006183264.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
gi|384076500|emb|CCH11081.1| DNA polymerase IV [Stenotrophomonas maltophilia D457]
Length = 364
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL ++S L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRRWSLVDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 249 DTFAEDLLLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|226292210|gb|EEH47630.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb18]
Length = 1161
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V+ + L +K + + LG
Sbjct: 511 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLG 570
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++ KS +
Sbjct: 571 GKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEI 629
Query: 123 SFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 161
S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 630 SW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|355712656|gb|AES04422.1| polymerase , eta [Mustela putorius furo]
Length = 417
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 94 GTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCS 153
G+WL+ + RGI + V+ R LPK+ G K+FPG AL T VQ WL QL EL ERL
Sbjct: 2 GSWLYAMCRGIEHDPVKPRKLPKTIGCSKNFPGKTALATQEQVQWWLLQLAHELEERLIK 61
Query: 154 DLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPL-RYGTAKIQEDTFNLFQAGLREF 212
D N R+A L + D R + C L RY K+ D F + +
Sbjct: 62 DRNDNDRVATQLAVIIRV----QGDRRLSSTRRCCALTRYDAHKMSRDAFAVIRN----- 112
Query: 213 LGSFGVKTQGSHYSGWRITALSVSASKIVPVLSGTCSIMKYF 254
+ G+KT S +T + + A+K +C+ + F
Sbjct: 113 CNTSGIKTDWSP----PLTMVFLCATKFSTSAPSSCTDITTF 150
>gi|225681089|gb|EEH19373.1| DNA polymerase IV [Paracoccidioides brasiliensis Pb03]
Length = 1161
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 7/161 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V+ + L +K + + LG
Sbjct: 511 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVQDFIGELTVKDLPGVAHSLG 570
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S++KL S G TG LWN ARGI EV ++ KS +
Sbjct: 571 GKLE-ELGVVFVKDIRELSKEKLTSSLGPKTGAKLWNYARGIDNTEVGIQVPRKSVSAEI 629
Query: 123 SFPGPRALKTVASVQ--HWLNQLCEELSERLCSDLEQNKRI 161
S+ ++ V+ Q ++ LC+EL RL +L + K++
Sbjct: 630 SW----GIRFVSQTQAEEFVQSLCDELHRRLVENLVKGKQL 666
>gi|194432752|ref|ZP_03065037.1| DNA polymerase IV [Shigella dysenteriae 1012]
gi|194419014|gb|EDX35098.1| DNA polymerase IV [Shigella dysenteriae 1012]
Length = 350
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 129 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 187
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ E+G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 188 AAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 246
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 247 TM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|418563747|ref|ZP_13128181.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
gi|371970362|gb|EHO87784.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21262]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|440735334|ref|ZP_20914941.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436430703|gb|ELP28061.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
DSM 20231]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|448513234|ref|XP_003866901.1| Rad32 protein [Candida orthopsilosis Co 90-125]
gi|380351239|emb|CCG21463.1| Rad32 protein [Candida orthopsilosis Co 90-125]
Length = 671
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 18/172 (10%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E +T SAG+A NK++AKL+ G KP QT V ++ L++ + + +GGKLG L
Sbjct: 259 ELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCALNRFLNNFELTDVTGMGGKLGEQL 318
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNT-----------GTWLWNIARGISGEEVQARLL 114
N GV + + F ++E+Y ++ L+ I RG+ E+ R+
Sbjct: 319 INRFGVPPDRNSIAF----IRENYSLSSVKEEIKEDPDLALKLYKIVRGLHPSELTDRVE 374
Query: 115 PKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
KS S K+F G R T+A WL +LS RL +DL+ N+ + +LT
Sbjct: 375 IKSMMSTKNFLGTRNW-TLADAYDWLTVFSGDLSNRL-TDLD-NESMELSLT 423
>gi|417671081|ref|ZP_12320581.1| DNA polymerase IV [Shigella dysenteriae 155-74]
gi|332097566|gb|EGJ02545.1| DNA polymerase IV [Shigella dysenteriae 155-74]
Length = 345
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ E+G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|49484136|ref|YP_041360.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA252]
gi|257426027|ref|ZP_05602449.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428700|ref|ZP_05605095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431310|ref|ZP_05607686.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257436932|ref|ZP_05612974.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282904526|ref|ZP_06312411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|282906299|ref|ZP_06314151.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282909215|ref|ZP_06317031.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911520|ref|ZP_06319320.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914693|ref|ZP_06322478.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282919730|ref|ZP_06327462.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282925134|ref|ZP_06332794.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|283958656|ref|ZP_06376102.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|293507770|ref|ZP_06667612.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|293510787|ref|ZP_06669489.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|293539327|ref|ZP_06672006.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|295428477|ref|ZP_06821104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590052|ref|ZP_06948692.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|384867134|ref|YP_005747330.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|387603227|ref|YP_005734748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|404479241|ref|YP_006710671.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
gi|415684801|ref|ZP_11449864.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|417886924|ref|ZP_12531064.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|418565646|ref|ZP_13130043.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|418581874|ref|ZP_13145954.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418596890|ref|ZP_13160434.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|418600790|ref|ZP_13164241.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|418892785|ref|ZP_13446894.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418900449|ref|ZP_13454507.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909822|ref|ZP_13463813.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418917922|ref|ZP_13471878.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923666|ref|ZP_13477579.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982961|ref|ZP_13530666.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418985616|ref|ZP_13533303.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|81650794|sp|Q6GFG2.1|DPO4_STAAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|49242265|emb|CAG40972.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257271170|gb|EEV03327.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274344|gb|EEV05856.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277959|gb|EEV08615.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283721|gb|EEV13846.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313092|gb|EFB43490.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C101]
gi|282316368|gb|EFB46745.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C427]
gi|282321407|gb|EFB51733.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M899]
gi|282324529|gb|EFB54841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326783|gb|EFB57080.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330496|gb|EFB60013.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Btn1260]
gi|282595082|gb|EFC00049.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus C160]
gi|283471165|emb|CAQ50376.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST398]
gi|283789696|gb|EFC28518.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919862|gb|EFD96931.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M1015]
gi|291094833|gb|EFE25101.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 58-424]
gi|291466418|gb|EFF08942.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
M809]
gi|295127459|gb|EFG57098.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577180|gb|EFH95894.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
MN8]
gi|312437639|gb|ADQ76710.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193424|gb|EFU23821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|341858556|gb|EGS99345.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21195]
gi|371972901|gb|EHO90269.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21264]
gi|374396472|gb|EHQ67709.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21342]
gi|374400687|gb|EHQ71795.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21345]
gi|377702813|gb|EHT27131.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377704176|gb|EHT28487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377706296|gb|EHT30595.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377711424|gb|EHT35657.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729387|gb|EHT53482.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377733260|gb|EHT57305.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377749229|gb|EHT73180.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377750768|gb|EHT74705.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|404440730|gb|AFR73923.1| DNA polymerase IV [Staphylococcus aureus 08BA02176]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|21283565|ref|NP_646653.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MW2]
gi|49486714|ref|YP_043935.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MSSA476]
gi|57652116|ref|YP_186780.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus COL]
gi|151222045|ref|YP_001332867.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|221141185|ref|ZP_03565678.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253729654|ref|ZP_04863819.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|258422972|ref|ZP_05685871.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|258451039|ref|ZP_05699075.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|262049939|ref|ZP_06022799.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|262053189|ref|ZP_06025347.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|282917242|ref|ZP_06324997.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282923234|ref|ZP_06330915.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283771045|ref|ZP_06343936.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|284024941|ref|ZP_06379339.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 132]
gi|294849444|ref|ZP_06790186.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|297208923|ref|ZP_06925327.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300913020|ref|ZP_07130458.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304379081|ref|ZP_07361828.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015099|ref|YP_005291335.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|379021655|ref|YP_005298317.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|384548185|ref|YP_005737438.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|384870436|ref|YP_005753150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|387143483|ref|YP_005731876.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387780958|ref|YP_005755756.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|415689555|ref|ZP_11452840.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|417649076|ref|ZP_12298882.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|417654248|ref|ZP_12303972.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|417797059|ref|ZP_12444259.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|417890486|ref|ZP_12534561.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|417897571|ref|ZP_12541501.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|417902413|ref|ZP_12546279.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|418278482|ref|ZP_12892363.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|418282422|ref|ZP_12895196.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|418286830|ref|ZP_12899468.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|418306652|ref|ZP_12918429.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|418316783|ref|ZP_12928216.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|418317606|ref|ZP_12929023.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|418319965|ref|ZP_12931331.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|418561209|ref|ZP_13125706.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|418570061|ref|ZP_13134360.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|418579821|ref|ZP_13143912.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418641460|ref|ZP_13203670.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648524|ref|ZP_13210566.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|418651462|ref|ZP_13213463.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|418659923|ref|ZP_13221575.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871769|ref|ZP_13426138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875828|ref|ZP_13430080.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418889716|ref|ZP_13443845.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418904230|ref|ZP_13458269.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418906834|ref|ZP_13460857.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912523|ref|ZP_13466501.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418926310|ref|ZP_13480207.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929243|ref|ZP_13483128.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418934888|ref|ZP_13488706.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418949246|ref|ZP_13501503.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|418950965|ref|ZP_13503097.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955346|ref|ZP_13507288.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|419773959|ref|ZP_14299943.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|424785854|ref|ZP_18212650.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|440708430|ref|ZP_20889095.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443639343|ref|ZP_21123354.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|448741043|ref|ZP_21723015.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|448744750|ref|ZP_21726633.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
gi|22095607|sp|P58964.1|DPO4_STAAW RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81649035|sp|Q6G838.1|DPO4_STAAS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81694161|sp|Q5HEM7.1|DPO4_STAAC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044608|sp|A6QIC3.1|DPO4_STAAE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21205006|dbj|BAB95701.1| MW1836 [Staphylococcus aureus subsp. aureus MW2]
gi|49245157|emb|CAG43623.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286302|gb|AAW38396.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
COL]
gi|150374845|dbj|BAF68105.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str. Newman]
gi|253726595|gb|EES95324.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257846759|gb|EEV70774.1| DNA-damage-inducible protein P [Staphylococcus aureus A9635]
gi|257861281|gb|EEV84093.1| ImpB/MucB/SamB family protein [Staphylococcus aureus A5948]
gi|259158916|gb|EEW44002.1| hypothetical protein SA930_1194 [Staphylococcus aureus 930918-3]
gi|259161947|gb|EEW46529.1| hypothetical protein SAD30_1409 [Staphylococcus aureus D30]
gi|269941366|emb|CBI49763.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282318869|gb|EFB49224.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus D139]
gi|282593145|gb|EFB98144.1| DNA polymerase IV [Staphylococcus aureus A9765]
gi|283459639|gb|EFC06730.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus H19]
gi|294823581|gb|EFG40008.1| DNA polymerase IV [Staphylococcus aureus A9754]
gi|296886413|gb|EFH25342.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|298695234|gb|ADI98456.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ED133]
gi|300885798|gb|EFK81005.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
TCH70]
gi|304342316|gb|EFM08208.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196234|gb|EFU26589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus CGS01]
gi|329314571|gb|AEB88984.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus T0131]
gi|329728616|gb|EGG65046.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21189]
gi|329731471|gb|EGG67834.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21193]
gi|334267648|gb|EGL86106.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21305]
gi|341839478|gb|EGS81059.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21235]
gi|341843119|gb|EGS84350.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21266]
gi|341854960|gb|EGS95820.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21200]
gi|344178060|emb|CCC88542.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359830964|gb|AEV78942.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus M013]
gi|365165527|gb|EHM57313.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21209]
gi|365170533|gb|EHM61531.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21202]
gi|365171887|gb|EHM62635.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21178]
gi|365228696|gb|EHM69875.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
VCU006]
gi|365240493|gb|EHM81267.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21340]
gi|365245156|gb|EHM85805.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21232]
gi|365246446|gb|EHM86998.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21194]
gi|371969684|gb|EHO87124.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21252]
gi|371985110|gb|EHP02198.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21283]
gi|374363796|gb|AEZ37901.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VC40]
gi|375019260|gb|EHS12821.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-24]
gi|375025433|gb|EHS18837.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-91]
gi|375025967|gb|EHS19358.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-88]
gi|375033508|gb|EHS26693.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367884|gb|EHS71822.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-125]
gi|375369487|gb|EHS73365.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-157]
gi|375371200|gb|EHS74987.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374974|gb|EHS78585.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-160]
gi|377693700|gb|EHT18069.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377721258|gb|EHT45396.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377736928|gb|EHT60941.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377740310|gb|EHT64307.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741462|gb|EHT65450.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377751523|gb|EHT75452.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377762302|gb|EHT86169.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377769119|gb|EHT92896.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769370|gb|EHT93140.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383972231|gb|EID88279.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
CO-23]
gi|421955823|gb|EKU08157.1| DNA polymerase IV [Staphylococcus aureus CN79]
gi|436504953|gb|ELP40917.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21282]
gi|443407154|gb|ELS65714.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21196]
gi|445548151|gb|ELY16405.1| DNA polymerase IV [Staphylococcus aureus KT/314250]
gi|445561950|gb|ELY18136.1| DNA polymerase IV [Staphylococcus aureus KT/Y21]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|257455879|ref|ZP_05621098.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
gi|257446727|gb|EEV21751.1| DNA polymerase IV [Enhydrobacter aerosaccus SK60]
Length = 351
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+L++T+ T SAG+++NKMLAK+AS +NKP + + +LP+KK + GK
Sbjct: 129 QILRQTQLTASAGVSYNKMLAKIASDLNKPNGIAVITPEQGLDFIANLPVKKFHGI-GKA 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +++G+ T DL D L++ +G G + IA GI EV+A KS GS
Sbjct: 188 TVKMLHDMGIFTGLDLRNTPADVLKQHFG-KRGDFFHQIAHGIDNREVKAERNHKSVGSE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + + L E S+ DL++ +R A T+T+
Sbjct: 247 TTF-----VHNTMDDKVIVAALYRENSQAF-KDLQKKQRKARTITI 286
>gi|41057954|gb|AAR98934.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 320
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 108 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 166
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ E+G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 167 AAKLEEMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 225
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 226 TM--------AEDIHHWSE--CEAIIERLYPELERR 251
>gi|417897786|ref|ZP_12541714.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
gi|341849861|gb|EGS90998.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
21259]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + + GK
Sbjct: 132 ILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|332185220|ref|ZP_08386969.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
gi|332014944|gb|EGI57000.1| impB/mucB/samB family protein [Sphingomonas sp. S17]
Length = 370
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
ET T SAG+++NK +AKLAS NKP +P G + +LP+K+ +G +
Sbjct: 142 ETGLTASAGVSYNKFIAKLASDQNKPDGICVIPPHHGPGFVAALPVKRFHGVGPVTARKM 201
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LG+ T DL D L +G + +L+ ARGI V+A+ + KS G+ ++F
Sbjct: 202 E-ALGILTGADLRDQPRDFLHRHFG-SYAEYLYGAARGIDHRPVRAQRVAKSVGAERTF- 258
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+T S + L+ E++ E +E++ I T+TL
Sbjct: 259 -----ETDLSERDALHAALEKVVEAAWIRIERSGAIGRTVTL 295
>gi|385782159|ref|YP_005758330.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|418572807|ref|ZP_13137011.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
gi|364523148|gb|AEW65898.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983970|gb|EHP01102.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21333]
Length = 356
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|338175642|ref|YP_004652452.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
gi|336480000|emb|CCB86598.1| DNA polymerase IV [Parachlamydia acanthamoebae UV-7]
Length = 359
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VLK T TCS GIA NK++AK+AS KP +P L +LPI + +G K
Sbjct: 133 VLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAIPGIGSKTE 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RLLPKSHGSG 121
SL ++ + T+ DL K D L E YG G + + A GI V PKS G+
Sbjct: 193 KSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEYFPKSIGAE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKS 174
+F A T+ L + EL ++ C L+ Q + +L L S F++
Sbjct: 251 TTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 299
>gi|320547508|ref|ZP_08041794.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
gi|320447853|gb|EFW88610.1| DNA-directed DNA polymerase IV [Streptococcus equinus ATCC 9812]
Length = 366
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK LAKLAS +KP T V + L LP++K +G K
Sbjct: 144 IWQEVHLTCSAGVSYNKFLAKLASDFDKPKGLTLVMPEDAEDFLKELPVEKFHGVGKKSV 203
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L ++LGV T DLL+ E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 204 EKL-HQLGVYTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVKPNRIRKSIGSER 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++ + L A ++ +++ + R+ + L +N +I + L
Sbjct: 262 TY--GKLLYDDADIKSEISK----NARRVVNSLARNNKIGRIVVL 300
>gi|418898552|ref|ZP_13452620.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377758672|gb|EHT82555.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 346
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 122 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGV-GKAS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 181 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 239
Query: 123 SF 124
+F
Sbjct: 240 TF 241
>gi|320352846|ref|YP_004194185.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
gi|320121348|gb|ADW16894.1| DNA-directed DNA polymerase [Desulfobulbus propionicus DSM 2032]
Length = 388
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAK+ASG +KP T +P + + +LPI K +G
Sbjct: 133 IRETTGLTASAGVSYNKFLAKIASGYHKPDGLTVIPPDRARDFIAALPIGKFYGVGPATE 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+Q G+ T DLL+FS ++ +G TG + +IARG+ VQ + KS G+
Sbjct: 193 RKMQAH-GIRTGADLLRFSRQEMVALFG-KTGHFFHDIARGLDQRPVQPVRVRKSIGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + A V L QL +++S RL ++ R TLTL
Sbjct: 251 TL--AEDILDYARVSVVLYQLVQQVS-RLLAEKATGGR---TLTL 289
>gi|212696530|ref|ZP_03304658.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
gi|212676466|gb|EEB36073.1| hypothetical protein ANHYDRO_01068 [Anaerococcus hydrogenalis DSM
7454]
Length = 347
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLK+T S GI++NK LAKLAS NKP + + + +L+ L IKK+ LG K
Sbjct: 124 QVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINENDIPNILEDLDIKKVHGLGNKS 183
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ ++G+ V DLLK ++ L+ +G G +++ + RG +V+ K G
Sbjct: 184 VEKLK-DIGIYKVKDLLKLDQEFLESLFG-KQGRYIYKVIRGEDKRKVETS--SKRKSIG 239
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ F + K + + ++ +E+S+++ +DL+ A+T+ L
Sbjct: 240 REFTFRKNTKDMKILYAYI----DEISKKIENDLKAKDIKAYTINL 281
>gi|87162181|ref|YP_494528.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195793|ref|YP_500603.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|161510117|ref|YP_001575776.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|384862538|ref|YP_005745258.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|416840638|ref|ZP_11903844.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|416846097|ref|ZP_11906377.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|418988982|ref|ZP_13536651.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418994606|ref|ZP_13542240.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|421150671|ref|ZP_15610326.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422744266|ref|ZP_16798233.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|87128155|gb|ABD22669.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203351|gb|ABD31161.1| ImpB/MucB/SamB family superfamily [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|160368926|gb|ABX29897.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|302751767|gb|ADL65944.1| DNA-directed DNA polymerase IV [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|320142358|gb|EFW34172.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA177]
gi|323439836|gb|EGA97552.1| DNA polymerase IV [Staphylococcus aureus O11]
gi|323442999|gb|EGB00620.1| DNA polymerase IV [Staphylococcus aureus O46]
gi|377716116|gb|EHT40300.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377743219|gb|EHT67202.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG290]
gi|394329366|gb|EJE55475.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
Newbould 305]
Length = 346
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 122 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 181 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 239
Query: 123 SF 124
+F
Sbjct: 240 TF 241
>gi|253734997|ref|ZP_04869162.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253727179|gb|EES95908.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 346
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 73/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + + GK
Sbjct: 122 ILEKTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGEFPGV-GKAS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 181 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 239
Query: 123 SF 124
+F
Sbjct: 240 TF 241
>gi|408823700|ref|ZP_11208590.1| DNA polymerase IV [Pseudomonas geniculata N1]
Length = 386
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 152 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLQPLPVNRVPGVGKVM 211
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 212 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 269
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+E+ + +R+ HT+ L
Sbjct: 270 DTFAEDLPLED-------LGEAIVQLAEKTWKATRKTERVGHTVVL 308
>gi|218961283|ref|YP_001741058.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans]
gi|167729940|emb|CAO80852.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Candidatus Cloacamonas acidaminovorans str. Evry]
Length = 353
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++T TCSAG+++NK LAK+ S +NKP T +P +L +LPI+K +G
Sbjct: 129 EILEKTGLTCSAGVSYNKFLAKIGSDLNKPDGLTYIPPEKASEILFALPIEKFYGIGKVT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ + G+ DL K+ L G G + + + RGI EV PKS
Sbjct: 189 SAKLKKK-GINNGADLYKYELKDLIRLLG-KAGHFYYYVVRGIDKREVITEFEPKSLSCE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F + + + L QL E LS RL
Sbjct: 247 TTF--YEDIDNLDYLLIILQQLAERLSNRL 274
>gi|429730965|ref|ZP_19265607.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
gi|429146693|gb|EKX89741.1| ImpB/MucB/SamB family protein [Corynebacterium durum F0235]
Length = 458
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET T S G K AK+ASG KP VP + LLD LP++K+ +G
Sbjct: 132 IREETGLTSSIGAGSGKQYAKIASGQAKPDGVFVVPRAREHELLDPLPVRKLWGIGPVAE 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T LQ +GV T+GD K S ++ + G G LW +A+G V+ R + K +
Sbjct: 192 TKLQR-IGVATIGDFAKLSGVEVDMTLGSTVGRALWQLAKGHDDRPVEPRAIAKQISAEH 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ + L TVA + +++ RL +D R A T+TL K +D +
Sbjct: 251 TY--SKDLTTVADIDAAIDRAASGAYRRLLTD----GRGARTVTLK---LKMADF----R 297
Query: 183 FPSKSCPLRYGT 194
S+S L Y T
Sbjct: 298 IESRSQSLLYAT 309
>gi|418645978|ref|ZP_13208094.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
gi|375022047|gb|EHS15540.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-55]
Length = 356
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|386729583|ref|YP_006195966.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
gi|418311480|ref|ZP_12923003.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|418980100|ref|ZP_13527887.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|365234136|gb|EHM75076.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21331]
gi|379992131|gb|EIA13589.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus DR10]
gi|384230876|gb|AFH70123.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 71193]
Length = 356
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|422316729|ref|ZP_16398113.1| DNA polymerase IV [Fusobacterium periodonticum D10]
gi|404590701|gb|EKA93027.1| DNA polymerase IV [Fusobacterium periodonticum D10]
Length = 352
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 10/190 (5%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL---GGKLGT 63
T TCS GI NK+ AK+AS +NKP F + K ++ + KK+K + G K
Sbjct: 129 TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKNFIEYISDKKIKIIPGVGRKFSE 186
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 123
L+++ + V D+ K+S D L + YG + G L+ RGI+ +EV+ S G+ ++
Sbjct: 187 ILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYEREIHSIGNEET 245
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
+ P L+T++ ++ N L E +RL + ++ I T+ + ++FK+ + KF
Sbjct: 246 YSIP--LQTISELEREFNSLFEYTYQRLIKNNVFSQSI--TVKIRYTSFKTYTKSKKLKF 301
Query: 184 PSKSCPLRYG 193
+K Y
Sbjct: 302 ATKDKDFLYN 311
>gi|430761508|ref|YP_007217365.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011132|gb|AGA33884.1| DNA polymerase IV [Thioalkalivibrio nitratireducens DSM 14787]
Length = 372
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T +CS GIA NK+LAK+AS ++KP T + S + + LP+ K+ +G K G
Sbjct: 139 VREATGLSCSIGIAPNKLLAKIASDLDKPDGLTVLAPSDLAARVWLLPVNKINGIGPKAG 198
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ LG+ T+GDL + L+ +G G WL A G+ + + P+S
Sbjct: 199 DRLQG-LGIRTIGDLAGAAPALLERHFGARMGGWLIRAAHGLDEQPIVTESEPRSMTRET 257
Query: 123 SFPG------PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
+F RAL T A L LCE ++ L + + + I L H
Sbjct: 258 TFERDLHPRQDRALLTAA-----LTGLCERVAGDLAARGYRGRTIGIKLRYH 304
>gi|422747071|ref|ZP_16800996.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
gi|320139725|gb|EFW31594.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MRSA131]
Length = 346
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 122 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 181 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 239
Query: 123 SF 124
+F
Sbjct: 240 TF 241
>gi|110799334|ref|YP_696252.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
gi|123344702|sp|Q0TQ38.1|DPO4_CLOP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110673981|gb|ABG82968.1| DNA polymerase IV [Clostridium perfringens ATCC 13124]
Length = 359
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L ++ E +SE LC
Sbjct: 248 KEITLREDIEDIDEMIEILERIAERVSESLC 278
>gi|225012038|ref|ZP_03702475.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
gi|225003593|gb|EEG41566.1| DNA-directed DNA polymerase [Flavobacteria bacterium MS024-2A]
Length = 366
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T T SAGI+ NK LAK+AS NKP Q T+P V L++L +KK +G K
Sbjct: 133 KIFSKTGLTASAGISINKFLAKIASDWNKPNGQKTIPPEEVLSFLENLDVKKFHGIGAKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ + DL S L++ +G +G + + RGI EV+ +PKS G+
Sbjct: 193 KLKMYG-LGIYSGNDLKLQSAAFLEKHFG-KSGIHYFKVVRGIHTSEVKPHRIPKSLGAE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F +T S + ++ + + +S L ++NK T+TL
Sbjct: 251 RTF------ETNLSSEVYIEEKLKLISALLEKRTKKNKVAGKTITL 290
>gi|82751548|ref|YP_417289.1| DNA polymerase IV [Staphylococcus aureus RF122]
gi|123548109|sp|Q2YU32.1|DPO4_STAAB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|82657079|emb|CAI81516.1| DNA polymerase IV [Staphylococcus aureus RF122]
Length = 328
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|424150956|ref|ZP_17882245.1| DNA polymerase IV [Escherichia coli PA24]
gi|424535976|ref|ZP_17979270.1| DNA polymerase IV [Escherichia coli EC4013]
gi|390734600|gb|EIO06094.1| DNA polymerase IV [Escherichia coli PA24]
gi|390877299|gb|EIP38236.1| DNA polymerase IV [Escherichia coli EC4013]
Length = 351
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ V + HW CE + ERL +LE+
Sbjct: 248 TM--------VEDIHHWSE--CEAIIERLYPELERR 273
>gi|422346234|ref|ZP_16427148.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
gi|373226856|gb|EHP49178.1| DNA polymerase IV [Clostridium perfringens WAL-14572]
Length = 359
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L ++ E +SE LC
Sbjct: 248 KEITLREDIEDIDEMIEILERIAERVSESLC 278
>gi|418568277|ref|ZP_13132626.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
gi|371980042|gb|EHO97258.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21272]
Length = 356
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T V + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVVDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|300814315|ref|ZP_07094587.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511582|gb|EFK38810.1| putative DNA polymerase IV [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 344
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+LK+T + S G++ NK LAKLAS NKP + V +L L I+K+ +G K
Sbjct: 125 ILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIITKDEVPDILMDLDIRKIHGIGKKSE 184
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N LG+ V DL ED L +G +G ++ RGI EVQ ++ KS G+
Sbjct: 185 DKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIKRKSLGTEN 242
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F P + V +++++N E+S+ DL + + TLT+ + + K
Sbjct: 243 TF-FPTDNRRV--LENYINIFSVEVSQ----DLIKRNLLGFTLTIKL-------KNDKFK 288
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALS 234
+KS YG K +ED REF ++ G S+ S +I L+
Sbjct: 289 IRTKSRTYEYGLYK-KEDIHREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQLT 342
>gi|285019488|ref|YP_003377199.1| DNA polymerase iv protein [Xanthomonas albilineans GPE PC73]
gi|283474706|emb|CBA17205.1| probable dna polymerase iv protein [Xanthomonas albilineans GPE
PC73]
Length = 353
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q + V+ L LP+ K+ +G +
Sbjct: 128 QIREETALTASAGIAPNKFLAKIASDWRKPDGQCVIHPHRVEAFLTPLPVNKVPGVGKVM 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ L LG+ TVGDL SE +L+ +G + G L+ ARGI V++ +S S
Sbjct: 188 QSKL-AALGIVTVGDLRDCSEAELEARFG-SFGLRLYQRARGIDERPVESDQPVQSISSE 245
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F AL+ L L+E+ + R+A T+ L
Sbjct: 246 DTFAEDLALEA-------LEPAIRRLAEKTWDATRRTDRVARTVVL 284
>gi|424779955|ref|ZP_18206841.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
gi|422843494|gb|EKU27931.1| DNA polymerase IV [Catellicoccus marimammalium M35/04/3]
Length = 360
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 100/187 (53%), Gaps = 10/187 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E + TCSAG+++NK LAKLAS KP T + L LPI+K K +G K
Sbjct: 133 KIWEELQLTCSAGVSYNKTLAKLASDYQKPCGLTYITKEQAPQFLAQLPIEKFKGIGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ LG+ D+L++SE + +++G G L+ +GI V+ + +S G+
Sbjct: 193 LPKMKA-LGIHYGRDVLRYSEQEWIQNFG-KFGYDLYQRVQGIDERPVEYKRKKQSIGTE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F P + + L Q +L+ER+ +L++ + + LTL + + ++ +R+
Sbjct: 251 RTFHPPLLDEGM------LQQTLRQLTERIAIELKEKEYYGNVLTLKWR-YPNKNAQTRQ 303
Query: 182 -KFPSKS 187
+FP ++
Sbjct: 304 IQFPHRT 310
>gi|344199852|ref|YP_004784178.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
gi|343775296|gb|AEM47852.1| DNA polymerase IV [Acidithiobacillus ferrivorans SS3]
Length = 399
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 8/150 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+++NK+LAKLAS KP VP L LP+ K+ +G
Sbjct: 161 RIERETGLTASAGVSYNKLLAKLASDWRKPNGLFVVPPERGLTFLAPLPVSKLHGVGPAT 220
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + +G+ TV DL S + L +G TG W + IARGI VQ KS G+
Sbjct: 221 VKKL-SSMGIHTVLDLRNMSREALIAQFG-KTGLWFYEIARGIDLRPVQPSRQRKSVGTE 278
Query: 122 KSFP----GPRALKTVASVQHWLNQLCEEL 147
++FP P+ + +A++Q Q+ L
Sbjct: 279 RTFPKNLADPKVM--LATLQQMAGQVAARL 306
>gi|282889601|ref|ZP_06298142.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500524|gb|EFB42802.1| hypothetical protein pah_c002o049 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 271
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VLK T TCS GIA NK++AK+AS KP +P L +LPI + +G K
Sbjct: 45 VLKNTGLTCSVGIASNKLIAKIASSRAKPNGLYEIPSGEEAAFLATLPIGAIPGIGSKTE 104
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA-RLLPKSHGSG 121
SL ++ + T+ DL K D L E YG G + + A GI V PKS G+
Sbjct: 105 KSLIDD-RLYTIADLQKIDLDTLIERYG-TRGYYFYLAAHGIDKRPVDGEEYFPKSIGAE 162
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLE--QNKRIAHTLTLHASAFKS 174
+F A T+ L + EL ++ C L+ Q + +L L S F++
Sbjct: 163 TTFEADLADSTI------LLETLSELVQKACKRLKKYQTRTRGFSLKLRYSDFRT 211
>gi|169830932|ref|YP_001716914.1| DNA polymerase IV [Candidatus Desulforudis audaxviator MP104C]
gi|169637776|gb|ACA59282.1| DNA-directed DNA polymerase [Candidatus Desulforudis audaxviator
MP104C]
Length = 395
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E TCS GI NK+LAK+A+G+ KP T + V L LP++++ +G +
Sbjct: 131 RIRREVGVTCSVGIGPNKLLAKMAAGLRKPDGLTVLRHEDVPARLWPLPVRELFGVGPRY 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG+ T+GDL F L+ +G G LW A G+ V R L + +G
Sbjct: 191 EEHLRR-LGIRTIGDLASFPVRVLKMRFGVY-GELLWRCANGVDESPVDPRSLDRCKSAG 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
PR + ++ + +L ++++ R+
Sbjct: 249 HQITLPRDYRRHGEIRVVILELADQVAARV 278
>gi|399026065|ref|ZP_10728032.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
gi|398076760|gb|EJL67810.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Chryseobacterium sp. CF314]
Length = 364
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+ LP++K + G++
Sbjct: 133 KIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKIENFLEELPVEKFYGV-GRV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ DL K + +L +G +G++ +N+ RGI EV K H
Sbjct: 192 TANKMFTLGIFKGKDLKKKTLQELVSLFG-KSGSYYYNVVRGIHNSEV------KPHRIQ 244
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS R + +N+ E LS L L++N + LTL
Sbjct: 245 KSVAVERTFFEDLFDEQQINEKLESLSAELHQRLQKNNILGRALTL 290
>gi|55823560|ref|YP_142001.1| DNA polymerase IV [Streptococcus thermophilus CNRZ1066]
gi|81559009|sp|Q5LYC2.1|DPO4_STRT1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55739545|gb|AAV63186.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus
CNRZ1066]
Length = 367
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|383759505|ref|YP_005438490.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
gi|381380174|dbj|BAL96991.1| DNA-directed DNA polymerase DinP [Rubrivivax gelatinosus IL144]
Length = 432
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T CS G+ NK+LAK+AS ++KP + V + + + LP++++ +G K G
Sbjct: 162 VRRTTGLVCSIGVTPNKLLAKIASELDKPDGLSVVTAAELPTRIWPLPVRRINGIGPKAG 221
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LGV T+GDL LQE +G + G WL A G V P S
Sbjct: 222 ARLAA-LGVATIGDLAMRERAWLQEHFGRSYGAWLHEAAHGQDDRPVVTHSEPVSVSRET 280
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L V + L + L+ER+ +DL++ A T+ +
Sbjct: 281 TF--ERDLHAVQD-RAQLTAVFTHLAERVAADLQRKGYAARTIGI 322
>gi|238752553|ref|ZP_04614027.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
gi|238709228|gb|EEQ01472.1| DNA polymerase IV [Yersinia rohdei ATCC 43380]
Length = 371
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 149 IAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLSFLHDLPLSKIPGVGKVTA 208
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ ELG+ T D+ FS+ +L + +G G LW + GI EV L KS G +
Sbjct: 209 KRLQ-ELGLITCSDVQNFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLRKSVGVER 266
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ + W Q CE L E+L S+LE R
Sbjct: 267 TL--------AEDIHDW--QSCESLIEQLYSELETRLR 294
>gi|357639281|ref|ZP_09137154.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|418417287|ref|ZP_12990483.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
gi|357587735|gb|EHJ57143.1| DNA polymerase IV [Streptococcus urinalis 2285-97]
gi|410871763|gb|EKS19709.1| DNA polymerase IV [Streptococcus urinalis FB127-CNA-2]
Length = 364
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V + L +LPI+K +G K L
Sbjct: 146 ELHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDAQEFLKALPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL SE L + +G G L+ ARGI V+ + KS GS +++
Sbjct: 206 -HEMGVFTGEDLLNISEMTLIDQFG-CFGYDLFRKARGIHYSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S ER+ LE+N +I L L
Sbjct: 263 --------AKLLYQDEDVKTEISHNVERVVKTLEKNGKIGKVLVL 299
>gi|222153676|ref|YP_002562853.1| DNA polymerase IV [Streptococcus uberis 0140J]
gi|222114489|emb|CAR43359.1| DNA polymerase IV [Streptococcus uberis 0140J]
Length = 364
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T + V+ L LPI+K +G K
Sbjct: 145 QEVHLTCSAGVSYNKFLAKLASDFQKPHGLTLILPDQVEDFLAELPIEKFHGVGTKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +ELGV T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 205 L-HELGVYTGKDLLEIPEITLIDHFG-RFGFDLYRKARGISNSPVKPNRIRKSIGSERTY 262
>gi|194364233|ref|YP_002026843.1| DNA polymerase IV [Stenotrophomonas maltophilia R551-3]
gi|226738241|sp|B4SIF5.1|DPO4_STRM5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|194347037|gb|ACF50160.1| DNA-directed DNA polymerase [Stenotrophomonas maltophilia R551-3]
Length = 356
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARG+ V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 249 DTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>gi|19568909|gb|AAL91966.1|AF483103_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|325093158|gb|EGC46468.1| DNA damage repair protein Mus42 [Ajellomyces capsulatus H88]
Length = 1162
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 507 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLG 566
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV KS +
Sbjct: 567 AKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEI 625
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 626 SW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|410595093|ref|YP_006951820.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
gi|410518732|gb|AFV72876.1| DNA polymerase IV [Streptococcus agalactiae SA20-06]
Length = 364
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G + ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>gi|409408114|ref|ZP_11256558.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
gi|386432570|gb|EIJ45397.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
protein [Herbaspirillum sp. GW103]
Length = 384
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T TCS G+A NKMLAK++S ++KP T + ++ + LP +K+ +G K L
Sbjct: 154 TALTCSVGVAPNKMLAKISSELDKPDGLTILTPEDIERRIWPLPARKINGIGPKAAEKLA 213
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
LG+ TV DL + S + L+ +G + WL +A+G+ VQ PKS +F
Sbjct: 214 A-LGIETVADLARASPELLRAHFGRSYSEWLGRVAQGVDDRPVQTYSEPKSISRETTF-- 270
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
R L A + L+++ L +L DLE+ + T+ +
Sbjct: 271 ERDLHARAD-RAQLSEIFTALCVKLAGDLERKGYVGRTIGI 310
>gi|320592660|gb|EFX05090.1| sister chromatid cohesion protein [Grosmannia clavigera kw1407]
Length = 870
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 17/186 (9%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGG 59
M + F CSAGIA NK+++KL S +KP +QT V +V L+ L + +++ LGG
Sbjct: 304 MAIYDHLRFRCSAGIASNKLVSKLGSSQHKPDRQTVVRPRAVGSFLERLSSVTRLRGLGG 363
Query: 60 KLGTSLQNELGVTTVGDLLKFSEDKLQ---------ESYGFNTGTWLWNIARGISGEEVQ 110
KLG + ++ +L ++Q ES +T ++ + RGI EV
Sbjct: 364 KLGARVVAAFDTESIAELRTIPLAEMQSRLAGGGAGESIDADTARHVYGMLRGIDHGEVT 423
Query: 111 ARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 170
+R KS S KSF P L + + WL EL RL ++R++ L S
Sbjct: 424 SRTEIKSLISAKSFQPP--LTSPEQGRRWLRVFAAELRCRLL-----DERLSQALLEAVS 476
Query: 171 AFKSSD 176
+ +D
Sbjct: 477 VGRDAD 482
>gi|22095606|sp|P58963.1|DPO4_ESCFE RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19568915|gb|AAL91969.1|AF483106_1 DNA polymerase DinB [Escherichia fergusonii]
Length = 331
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 119 IFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIPGV-GKVS 177
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 178 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 236
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 237 TM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|297559858|ref|YP_003678832.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296844306|gb|ADH66326.1| DNA-directed DNA polymerase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 417
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E TCS G+A + AKL S KP VP + V+G LD LP+ + +G +
Sbjct: 154 RVRREQRLTCSVGVAATRFTAKLGSTHCKPDGLLLVPTAHVRGFLDPLPVGALPGVGDRT 213
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+L LGV TVG L ++ D L+ G GT L ++RG+ V KS GS
Sbjct: 214 EQTLAR-LGVRTVGQLARYEPDLLRMELGDKAGTRLAELSRGVDTSPVVPESPDKSIGSE 272
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F A V V L +L E++ RL
Sbjct: 273 ETFDEDVADPEV--VDRELLRLAEKVGRRL 300
>gi|418056114|ref|ZP_12694168.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
gi|353210392|gb|EHB75794.1| DNA polymerase IV [Hyphomicrobium denitrificans 1NES1]
Length = 360
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L ET T SAG+++NK LAKLAS + KP Q +P ++ LP+K+ +G
Sbjct: 133 RILAETGLTASAGVSYNKFLAKLASDVRKPNGQFVIPPQRGAEFIEGLPVKQFHGVGPVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ N LG+ T DL S + LQ+ +G +G W + IARG V+ KS GS
Sbjct: 193 AEKM-NALGIQTGADLRAQSLEFLQQHFG-RSGAWYYAIARGEDDRPVEPNRPRKSSGSE 250
Query: 122 KSFPGPRAL 130
+F R L
Sbjct: 251 TTFSEDRLL 259
>gi|423016898|ref|ZP_17007619.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
gi|338780129|gb|EGP44547.1| DNA polymerase IV [Achromobacter xylosoxidans AXX-A]
Length = 360
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ ET T SAG+A NK LAK+AS NKP Q + + V L LP++K+ + GK+
Sbjct: 132 QIRAETGLTASAGVAPNKFLAKIASDWNKPDGQFVIRPTRVLEFLQPLPVRKVPGV-GKV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ +LG+ TVGDL +L+ +G G L+ +ARGI EVQ
Sbjct: 191 TQARLEQLGIQTVGDLATHGVQELEHYFG-RYGRRLYELARGIDEREVQ 238
>gi|242096850|ref|XP_002438915.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
gi|241917138|gb|EER90282.1| hypothetical protein SORBIDRAFT_10g028100 [Sorghum bicolor]
Length = 1017
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ T SAGIA N +LA+LA+ KP Q +P L SL IK + +G +
Sbjct: 396 EIFHATKCTASAGIAENMLLARLATRSAKPNGQCFIPSEKADDYLSSLSIKALPGIGHTV 455
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ L+++ + G L +D L + +G TG LWN RGI V + KS G+
Sbjct: 456 SSKLKSK-EIEYCGQLRNVPKDALHKDFGKKTGDLLWNYCRGIDHSVVGSVQETKSVGAE 514
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++ G R +H+L LC+E+S RL
Sbjct: 515 INW-GVR-FNDNKDAEHFLTNLCKEVSLRL 542
>gi|148268367|ref|YP_001247310.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH9]
gi|150394429|ref|YP_001317104.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus JH1]
gi|189044606|sp|A6U2Z9.1|DPO4_STAA2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044607|sp|A5IU61.1|DPO4_STAA9 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|147741436|gb|ABQ49734.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH9]
gi|149946881|gb|ABR52817.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus
JH1]
Length = 356
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|255079098|ref|XP_002503129.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
gi|226518395|gb|ACO64387.1| umuc-like DNA repair protein [Micromonas sp. RCC299]
Length = 652
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V T SAGIAHNKMLAKL SG++KP QTT+P L+ LP++ + +G
Sbjct: 259 VRSATGLRMSAGIAHNKMLAKLVSGLHKPDDQTTLPAGVAAKLVSPLPVRALPGVGHGAE 318
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L + GV T DL + + ++ E G G + + A G+ EEV + P
Sbjct: 319 RTLVHR-GVRTAADLRRVTRSEVCEWLGPRVGRKVHDAAWGVDREEVAPKPAPNFVTCED 377
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLE 156
SF R+ T +SV L + +L R+ + E
Sbjct: 378 SF---RSCTTWSSVDAVLAVIAPDLLARMDEEYE 408
>gi|418662812|ref|ZP_13224345.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035502|gb|EHS28624.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-122]
Length = 356
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|298675570|ref|YP_003727320.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298288558|gb|ADI74524.1| DNA-directed DNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 364
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+ TCS GIA NK +AK+AS KP T + V+ L LP+ K+ +G K +L N
Sbjct: 143 KLTCSIGIAPNKTIAKIASDFKKPDGLTAIKPEEVENFLSPLPVSKIPGVGKKTNEALDN 202
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LGV T+GDL F L +G +G ++ IA+GI EV+ + KS +F
Sbjct: 203 -LGVKTIGDLKNFDVQVLIGKFG-KSGLRMYQIAKGIDNREVEEQTEVKSISKEDTFDED 260
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
A A ++ + LS+ + + L + K + T+TL
Sbjct: 261 IADPITAE------EIIDILSDEVHNSLVKKKYLFKTVTL 294
>gi|15924885|ref|NP_372419.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|15927469|ref|NP_375002.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus N315]
gi|156980211|ref|YP_001442470.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu3]
gi|253316904|ref|ZP_04840117.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006682|ref|ZP_05145283.2| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257793751|ref|ZP_05642730.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|258421003|ref|ZP_05683934.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|258430025|ref|ZP_05688395.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|258443457|ref|ZP_05691799.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|258445315|ref|ZP_05693506.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|258447879|ref|ZP_05696013.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|258453312|ref|ZP_05701297.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|269203548|ref|YP_003282817.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282894562|ref|ZP_06302790.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|282928068|ref|ZP_06335675.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|295407275|ref|ZP_06817074.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|296276904|ref|ZP_06859411.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus MR1]
gi|297246199|ref|ZP_06930050.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|384865100|ref|YP_005750459.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386831484|ref|YP_006238138.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387151036|ref|YP_005742600.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|415693410|ref|ZP_11455212.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|417652327|ref|ZP_12302075.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|417799257|ref|ZP_12446403.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|417802359|ref|ZP_12449421.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|417892730|ref|ZP_12536773.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|418313350|ref|ZP_12924841.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|418425084|ref|ZP_12998184.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|418428036|ref|ZP_13001029.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|418430906|ref|ZP_13003812.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|418434765|ref|ZP_13006620.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|418437519|ref|ZP_13009303.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|418440428|ref|ZP_13012121.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|418443426|ref|ZP_13015021.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|418446497|ref|ZP_13017961.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|418449518|ref|ZP_13020893.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|418452343|ref|ZP_13023672.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|418455316|ref|ZP_13026569.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418458192|ref|ZP_13029385.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418600140|ref|ZP_13163609.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|418640175|ref|ZP_13202408.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653301|ref|ZP_13215240.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|418656863|ref|ZP_13218650.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|418878853|ref|ZP_13433085.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881582|ref|ZP_13435797.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884557|ref|ZP_13438743.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887258|ref|ZP_13441399.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418894685|ref|ZP_13448783.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418915025|ref|ZP_13468993.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920153|ref|ZP_13474087.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|419784424|ref|ZP_14310191.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|443635272|ref|ZP_21119403.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
gi|54036997|sp|P63992.1|DPO4_STAAN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|54040958|sp|P63991.1|DPO4_STAAM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044605|sp|A7X420.1|DPO4_STAA1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13701688|dbj|BAB42981.1| SA1711 [Staphylococcus aureus subsp. aureus N315]
gi|14247667|dbj|BAB58057.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus Mu50]
gi|156722346|dbj|BAF78763.1| hypothetical protein SAHV_1880 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257787723|gb|EEV26063.1| DNA polymerase IV [Staphylococcus aureus A9781]
gi|257842951|gb|EEV67369.1| DNA polymerase IV [Staphylococcus aureus A9719]
gi|257849619|gb|EEV73587.1| DNA polymerase IV [Staphylococcus aureus A9299]
gi|257851342|gb|EEV75282.1| DNA polymerase IV [Staphylococcus aureus A8115]
gi|257855833|gb|EEV78757.1| DNA polymerase IV [Staphylococcus aureus A6300]
gi|257858811|gb|EEV81680.1| DNA polymerase IV [Staphylococcus aureus A6224]
gi|257864520|gb|EEV87263.1| DNA polymerase IV [Staphylococcus aureus A5937]
gi|262075838|gb|ACY11811.1| DNA-damage-inducible protein P [Staphylococcus aureus subsp. aureus
ED98]
gi|282590132|gb|EFB95213.1| DNA polymerase IV [Staphylococcus aureus A10102]
gi|282763049|gb|EFC03181.1| DNA polymerase IV [Staphylococcus aureus A8117]
gi|285817575|gb|ADC38062.1| DNA polymerase IV [Staphylococcus aureus 04-02981]
gi|294967850|gb|EFG43880.1| DNA polymerase IV [Staphylococcus aureus A8819]
gi|297176906|gb|EFH36163.1| DNA polymerase IV [Staphylococcus aureus A8796]
gi|312830267|emb|CBX35109.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129296|gb|EFT85290.1| hypothetical protein CGSSa03_08540 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724814|gb|EGG61318.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21172]
gi|334274366|gb|EGL92687.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21310]
gi|334274843|gb|EGL93150.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21318]
gi|341857210|gb|EGS98032.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus 21201]
gi|365236159|gb|EHM77060.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21334]
gi|374395052|gb|EHQ66326.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21343]
gi|375015118|gb|EHS08783.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018963|gb|EHS12529.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-99]
gi|375032138|gb|EHS25391.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-105]
gi|377693131|gb|EHT17506.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377696038|gb|EHT20395.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377712330|gb|EHT36548.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377722126|gb|EHT46253.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377730091|gb|EHT54165.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377755053|gb|EHT78957.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377766065|gb|EHT89903.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|383364037|gb|EID41359.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-M]
gi|385196876|emb|CCG16513.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716866|gb|EIK04904.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS2]
gi|387717367|gb|EIK05382.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS3a]
gi|387717639|gb|EIK05639.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS1]
gi|387724007|gb|EIK11693.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS4]
gi|387726071|gb|EIK13655.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS5]
gi|387729222|gb|EIK16678.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS6]
gi|387733714|gb|EIK20887.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS8]
gi|387735534|gb|EIK22654.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS9]
gi|387735637|gb|EIK22748.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus VRS7]
gi|387743458|gb|EIK30250.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS10]
gi|387743497|gb|EIK30288.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387745166|gb|EIK31927.1| dinP- DNA-damage-inducible protein P DNA polymerase IV
[Staphylococcus aureus subsp. aureus VRS11b]
gi|443409751|gb|ELS68242.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
21236]
Length = 356
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|239610626|gb|EEQ87613.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ER-3]
Length = 1171
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 515 VKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLG 574
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV + P+ S +
Sbjct: 575 AKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-APRKSVSAE 632
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
G R + A + ++ LC+EL RL +L + K++
Sbjct: 633 INWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|300776039|ref|ZP_07085898.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
gi|300505172|gb|EFK36311.1| DNA-directed DNA polymerase [Chryseobacterium gleum ATCC 35910]
Length = 365
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK LAK+AS +NKP Q T+ ++ L+ LP++K + GK+
Sbjct: 133 KIFEQTGLTASAGISVNKFLAKVASDINKPNGQKTIHPDKMEEFLEELPVEKFYGV-GKV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ DL K S + L +G +G +N+ RGI EV+ + KS
Sbjct: 192 TANKMFSLGIYKGKDLKKKSLEDLIRIFG-KSGQHYYNVVRGIHTSEVKPHRIQKSVAVE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + Q +N+ E L++ L L++N + TLTL
Sbjct: 251 RTF-----FEDLLDEQQ-INEKLESLAQELHQRLQKNNILGRTLTL 290
>gi|327348940|gb|EGE77797.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis ATCC
18188]
Length = 1171
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 515 VKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLG 574
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV + P+ S +
Sbjct: 575 AKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-APRKSVSAE 632
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
G R + A + ++ LC+EL RL +L + K++
Sbjct: 633 INWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|154281677|ref|XP_001541651.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
gi|150411830|gb|EDN07218.1| hypothetical protein HCAG_03749 [Ajellomyces capsulatus NAm1]
Length = 1162
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 507 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDLPGVAHSLG 566
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV KS +
Sbjct: 567 AKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEI 625
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 626 SW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|225563209|gb|EEH11488.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 1162
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 507 VKEQTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLTVKDLPGVAHSLG 566
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ + S++KL S G TGT LW+ +RGI EV KS +
Sbjct: 567 AKLE-ELGVTFVKDIRELSKEKLISSLGPKTGTKLWDFSRGIDNTEVGFHPPRKSVSAEI 625
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
S+ G R + A + ++ LC+EL RL +L + K++
Sbjct: 626 SW-GIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 662
>gi|332522339|ref|ZP_08398591.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
gi|332313603|gb|EGJ26588.1| putative DNA polymerase IV [Streptococcus porcinus str. Jelinkova
176]
Length = 364
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAGI++NK LAKLAS KP T + + L+ LPI+K +G K
Sbjct: 145 KELHLTCSAGISYNKFLAKLASDFEKPHGLTLILPDQAQPFLEKLPIEKFHGVGIKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +E+GV DLL SE L + +G G L+ ARGIS V+A + KS GS +++
Sbjct: 205 L-HEMGVYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISYSPVKANRIRKSIGSERTY 262
>gi|418932215|ref|ZP_13486045.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418991828|ref|ZP_13539487.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|424767720|ref|ZP_18195035.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|377711767|gb|EHT35994.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377721523|gb|EHT45654.1| impB/mucB/samB family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|402348809|gb|EJU83783.1| putative DNA polymerase IV [Staphylococcus aureus subsp. aureus
CM05]
gi|408423947|emb|CCJ11358.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408425936|emb|CCJ13323.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408427924|emb|CCJ15287.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408429913|emb|CCJ27078.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408431899|emb|CCJ19214.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408433894|emb|CCJ21179.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408435886|emb|CCJ23146.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
gi|408437869|emb|CCJ25112.1| DNA polymerase IV [Staphylococcus aureus subsp. aureus ST228]
Length = 346
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 122 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 181 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 239
Query: 123 SF 124
+F
Sbjct: 240 TF 241
>gi|261195218|ref|XP_002624013.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
gi|239587885|gb|EEQ70528.1| DNA damage repair protein Mus42 [Ajellomyces dermatitidis SLH14081]
Length = 1171
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T S GI N + A++A KPA Q + +V + +L +K + + LG
Sbjct: 515 VKERTGCNISVGIGGNVLQARVALRKAKPAGQFQLKPDAVLDFIGTLAVKDLPGVAHSLG 574
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGVT V D+ S +KL S G TG LW+ ARGI EV + P+ S +
Sbjct: 575 AKLE-ELGVTFVKDIRDLSREKLTSSLGPKTGAKLWDFARGIDNTEVGVQ-APRKSVSAE 632
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
G R + A + ++ LC+EL RL +L + K++
Sbjct: 633 INWGIRFVNQ-AQAEEFVQSLCDELHRRLVENLVKGKQL 670
>gi|432439586|ref|ZP_19681949.1| DNA polymerase IV [Escherichia coli KTE189]
gi|432444710|ref|ZP_19687019.1| DNA polymerase IV [Escherichia coli KTE191]
gi|433012430|ref|ZP_20200815.1| DNA polymerase IV [Escherichia coli KTE104]
gi|433021974|ref|ZP_20210004.1| DNA polymerase IV [Escherichia coli KTE106]
gi|433325955|ref|ZP_20402923.1| DNA polymerase IV [Escherichia coli J96]
gi|430969396|gb|ELC86500.1| DNA polymerase IV [Escherichia coli KTE189]
gi|430976085|gb|ELC92960.1| DNA polymerase IV [Escherichia coli KTE191]
gi|431536262|gb|ELI12591.1| DNA polymerase IV [Escherichia coli KTE104]
gi|431541300|gb|ELI16740.1| DNA polymerase IV [Escherichia coli KTE106]
gi|432345767|gb|ELL40260.1| DNA polymerase IV [Escherichia coli J96]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|282882761|ref|ZP_06291368.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
gi|281297422|gb|EFA89911.1| DNA polymerase IV [Peptoniphilus lacrimalis 315-B]
Length = 344
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 22/236 (9%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+LK+T + S G++ NK LAKLAS NKP + V +L L I+K+ +G K
Sbjct: 125 ILKKTGLSVSIGMSTNKFLAKLASDWNKPRGIKIISKDEVPDILMDLDIRKIHGIGKKSE 184
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N LG+ V DL ED L +G +G ++ RGI EVQ ++ KS G+
Sbjct: 185 DKLRN-LGIDKVCDLYNLEEDFLINLFG-KSGEDIYKRIRGIDDREVQTKIKRKSLGTEN 242
Query: 123 S-FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+ FP + +++++ E+S+ DL + + TLT+ + +
Sbjct: 243 TFFPTDNRI----DLENYIKIFSGEVSQ----DLIKRNLLGFTLTIKL-------KNDKF 287
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALS 234
K +KS YG K +ED + REF ++ G S+ S +I L+
Sbjct: 288 KIRTKSRTYEYGLYK-KEDIYREGLILFREFYNDDKIRLIGLTVSNLSDLKIHQLT 342
>gi|422804340|ref|ZP_16852772.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
gi|324114892|gb|EGC08858.1| impB/mucB/samB family protein [Escherichia fergusonii B253]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|258408893|ref|ZP_05681175.1| DNA polymerase IV [Staphylococcus aureus A9763]
gi|257840340|gb|EEV64802.1| DNA polymerase IV [Staphylococcus aureus A9763]
Length = 337
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 113 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 171
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 172 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 230
Query: 123 SF 124
+F
Sbjct: 231 TF 232
>gi|427736430|ref|YP_007055974.1| nucleotidyltransferase/DNA polymerase [Rivularia sp. PCC 7116]
gi|427371471|gb|AFY55427.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rivularia sp. PCC 7116]
Length = 360
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET+ T SAG++ NK LAK+ASG NKP T + + ++ LPI+K + GK+
Sbjct: 136 EIFQETKLTASAGVSINKFLAKMASGANKPNGMTVILPEQAQEFVEKLPIEKFHGI-GKV 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
S +LG+ +L + + L +G G + +NIAR VQ + KS G+
Sbjct: 195 TASKMKKLGIHNGANLKELKLEFLVRHFG-KAGNYYYNIARAEDNRAVQPNRIRKSIGAE 253
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
SF + L S+ L Q+ L +R LE+++ T+TL
Sbjct: 254 NSF--AKDLSDETSILRELEQIALTLQKR----LEKHQTSGRTITL 293
>gi|424817372|ref|ZP_18242523.1| DNA polymerase IV [Escherichia fergusonii ECD227]
gi|325498392|gb|EGC96251.1| DNA polymerase IV [Escherichia fergusonii ECD227]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417002085|ref|ZP_11941474.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479226|gb|EGC82322.1| ImpB/MucB/SamB family protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 344
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V ++T + S GI++NK LAKLAS KP T + + +L + I K+ +G K
Sbjct: 123 KVQRQTGISISVGISYNKFLAKLASDWKKPHGITKINKDDLDKMLPDISIDKVHGIGRKT 182
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N++GV+ VGDLLK E+ L +++G GT+++++ RG+ +V KS G
Sbjct: 183 SQKL-NKIGVSKVGDLLKLDEEYLTDNFG-KQGTYIYHVIRGVDNRKVNPSRKRKSIGKE 240
Query: 122 KSF 124
++F
Sbjct: 241 RTF 243
>gi|300773786|ref|ZP_07083655.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
gi|300759957|gb|EFK56784.1| DNA-directed DNA polymerase IV [Sphingobacterium spiritivorum ATCC
33861]
Length = 359
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T SAG++ NK +AK+AS +NKP T + S V ++ LPI+K + GK+
Sbjct: 132 EIREELNLTVSAGVSVNKFVAKIASDINKPDGLTFIGPSKVVAFMEHLPIEKFFGV-GKV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
S +LG+ D+ +++++ L +G TG + +NI RG+ VQ KS
Sbjct: 191 TASKMKKLGIHRGADMKQWTQEALTRHFG-KTGKFFYNIVRGVDNRPVQPNRQTKSISVE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + +A +Q L + +ELS RL L + T+TL
Sbjct: 250 DTFA-----QDIADLQ-VLEDILKELSGRLAKRLNAKQLAGKTVTL 289
>gi|432356608|ref|ZP_19599855.1| DNA polymerase IV [Escherichia coli KTE4]
gi|430879418|gb|ELC02749.1| DNA polymerase IV [Escherichia coli KTE4]
Length = 351
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPSV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|373856739|ref|ZP_09599483.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
gi|372453718|gb|EHP27185.1| DNA-directed DNA polymerase [Bacillus sp. 1NLA3E]
Length = 433
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 83/165 (50%), Gaps = 6/165 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+LKE + CS GIA NK LAK+AS M KP T + + +L + +M +G K
Sbjct: 138 LLKELDIPCSIGIAPNKFLAKMASDMKKPLGITILRKRDISSVLWPMEAGEMHGVGKKTA 197
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LG+ T+GDL K ++ +L+ G N G L + A G+ V P+S K
Sbjct: 198 EKLA-PLGILTIGDLAKANDIQLKALLGIN-GLRLKDRANGVDKRTVN----PESVYDFK 251
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
S L S QH L Q+ E L E++ L++ K +A T+++
Sbjct: 252 SIGNSTTLAKDVSNQHLLFQVIEGLVEKVTQRLKRKKVLAQTISV 296
>gi|372223245|ref|ZP_09501666.1| DNA polymerase IV [Mesoflavibacter zeaxanthinifaciens S86]
Length = 365
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 13/189 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L +T T SAGI+ NK +AK+AS NKP Q TV V L +L I+K + GK+
Sbjct: 134 KILDKTGLTASAGISINKFIAKIASDYNKPNGQKTVNPEEVLEFLSALDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL K S + L + +G +G +N+ RGI V+ PKS G+
Sbjct: 193 TAEKMYQLGIFTGADLKKKSLEFLNQEFG-KSGQHYYNVVRGIHLSTVKPSRTPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F S + ++ Q E +++ L L+++K T+TL K SD
Sbjct: 252 RTFSEN------LSSEIFMLQRLENIAQELEKRLKKSKLAGKTVTL-----KIKYSDFTL 300
Query: 182 KFPSKSCPL 190
+ SK+ P
Sbjct: 301 QTRSKTLPF 309
>gi|146317857|ref|YP_001197569.1| DNA polymerase IV [Streptococcus suis 05ZYH33]
gi|145688663|gb|ABP89169.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 05ZYH33]
Length = 337
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 128 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 187
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 188 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSSGKERTY- 244
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 245 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 281
>gi|257434028|ref|ZP_05610379.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257280954|gb|EEV11098.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
E1410]
Length = 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTEH 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|300929520|ref|ZP_07144986.1| DNA polymerase IV, partial [Escherichia coli MS 187-1]
gi|300462519|gb|EFK26012.1| DNA polymerase IV [Escherichia coli MS 187-1]
Length = 328
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|420369939|ref|ZP_14870578.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
gi|391320753|gb|EIQ77562.1| DNA polymerase IV, partial [Shigella flexneri 1235-66]
Length = 288
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|374623299|ref|ZP_09695812.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
gi|373942413|gb|EHQ52958.1| DNA polymerase IV [Ectothiorhodospira sp. PHS-1]
Length = 383
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 73/152 (48%), Gaps = 6/152 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V T TCS GIA NK+LAKL S ++KP T + V + LP+ K+ +G K
Sbjct: 151 VRDATGLTCSIGIAPNKLLAKLCSELDKPDGLTLLTTDDVPTRIWPLPVGKVNGIGPKAA 210
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ LG+ TVGDL L+E +G G WL ARGI V+ +P+S
Sbjct: 211 ARLE-ALGILTVGDLAACGPGLLREQFGPTYGAWLHQAARGIDDRPVETVSVPRSVSRET 269
Query: 123 SFP---GPRALKTVASVQHWLNQLCEELSERL 151
+F PR + A + LC +S+ L
Sbjct: 270 TFERDLHPR--QDRAELSEIFTALCMRVSQDL 299
>gi|336172096|ref|YP_004579234.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
gi|334726668|gb|AEH00806.1| DNA polymerase IV [Lacinutrix sp. 5H-3-7-4]
Length = 366
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS NKP Q TV V G L++L I+K + GK+
Sbjct: 134 RIFNEVGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLGFLEALDIRKFYGI-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G+ T DL S + L++++G +G++ + I RGI EV+ + KS +
Sbjct: 193 TAEKMYQKGIFTGTDLKSKSLEFLEQNFG-KSGSYYYYIVRGIHNSEVKPNRIRKSLAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F L + + L + EE+S+RL ++K T+TL
Sbjct: 252 RTF--SENLSSEIFMLEKLEHIAEEVSKRLI----RSKVAGKTVTL 291
>gi|354546768|emb|CCE43500.1| hypothetical protein CPAR2_211440 [Candida parapsilosis]
Length = 670
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 18/175 (10%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E +T SAG+A NK++AKL+ G KP QT V ++ L + + + +GGKLG
Sbjct: 253 IYDELGYTTSAGLARNKLVAKLSGGFKKPDDQTIVRNCALNRFLSNFELTDVTGMGGKLG 312
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNT-----------GTWLWNIARGISGEEVQA 111
L N+ V + + F ++E+Y F+ L+ I RG+ E+
Sbjct: 313 EQLINKFEVPPDRNSIAF----IRENYTFDMVKQELREDAELALKLYQIVRGLYSSELTD 368
Query: 112 RLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT 166
R+ KS S K+F G + T+A WL +LS RL +DL+ N+ + +LT
Sbjct: 369 RIEIKSMMSTKNFLGSKGW-TLADAYDWLTVFSGDLSNRL-TDLD-NESMELSLT 420
>gi|146320049|ref|YP_001199760.1| DNA polymerase IV [Streptococcus suis 98HAH33]
gi|253751099|ref|YP_003024240.1| DNA polymerase IV [Streptococcus suis SC84]
gi|253753000|ref|YP_003026140.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|253754823|ref|YP_003027963.1| DNA polymerase IV [Streptococcus suis BM407]
gi|386577190|ref|YP_006073595.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|386581236|ref|YP_006077640.1| DNA polymerase IV [Streptococcus suis SS12]
gi|386587467|ref|YP_006083868.1| DNA polymerase IV [Streptococcus suis A7]
gi|403060877|ref|YP_006649093.1| DNA polymerase IV [Streptococcus suis S735]
gi|189044615|sp|A4VZ21.1|DPO4_STRS2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|145690855|gb|ABP91360.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus suis 98HAH33]
gi|251815388|emb|CAZ50961.1| DNA polymerase IV [Streptococcus suis SC84]
gi|251817287|emb|CAZ55017.1| DNA polymerase IV [Streptococcus suis BM407]
gi|251819245|emb|CAR44505.1| DNA polymerase IV [Streptococcus suis P1/7]
gi|292557652|gb|ADE30653.1| DNA-directed DNA polymerase [Streptococcus suis GZ1]
gi|353733382|gb|AER14392.1| DNA polymerase IV [Streptococcus suis SS12]
gi|354984628|gb|AER43526.1| DNA polymerase IV [Streptococcus suis A7]
gi|402808203|gb|AFQ99694.1| DNA polymerase IV [Streptococcus suis S735]
Length = 355
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSSGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 263 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|386579169|ref|YP_006075574.1| DNA polymerase IV [Streptococcus suis JS14]
gi|319757361|gb|ADV69303.1| DNA polymerase IV [Streptococcus suis JS14]
Length = 355
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSSGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 263 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|19568905|gb|AAL91964.1|AF483101_1 DNA polymerase DinB [Escherichia coli]
gi|19568911|gb|AAL91967.1|AF483104_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|388567220|ref|ZP_10153657.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
gi|388265603|gb|EIK91156.1| DNA polymerase IV [Hydrogenophaga sp. PBC]
Length = 423
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ T TCS G+A NK+LAK+AS NKP + V ++ L+ LP +K+ +G K
Sbjct: 172 IFDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVMPEDLQRLIWPLPCRKVNGVGPKAD 231
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ+ G+ T+GDL D L ++G + G WL +A G V P
Sbjct: 232 ARLQSH-GIHTIGDLAAREPDWLVANFGKSYGAWLHEVAWGRDDRPVVTESEPVGMSRET 290
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L V + L + EL E++ SDL++ +A T+ +
Sbjct: 291 TF--ERDLHAVHD-RAELGAILTELCEQVASDLQRKGYLARTIGI 332
>gi|19568865|gb|AAL91944.1|AF483081_1 DNA polymerase DinB [Escherichia coli]
gi|19568869|gb|AAL91946.1|AF483083_1 DNA polymerase DinB [Escherichia coli]
gi|19568871|gb|AAL91947.1|AF483084_1 DNA polymerase DinB [Escherichia coli]
gi|19568873|gb|AAL91948.1|AF483085_1 DNA polymerase DinB [Escherichia coli]
gi|19568875|gb|AAL91949.1|AF483086_1 DNA polymerase DinB [Escherichia coli]
gi|19568877|gb|AAL91950.1|AF483087_1 DNA polymerase DinB [Escherichia coli]
gi|19568879|gb|AAL91951.1|AF483088_1 DNA polymerase DinB [Escherichia coli]
gi|19568881|gb|AAL91952.1|AF483089_1 DNA polymerase DinB [Escherichia coli]
gi|19568889|gb|AAL91956.1|AF483093_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|336384514|gb|EGO25662.1| hypothetical protein SERLADRAFT_437387 [Serpula lacrymans var.
lacrymans S7.9]
Length = 890
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 88/171 (51%), Gaps = 14/171 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGK 60
V KET T SAGIA NKMLAK+ S NKP Q +PF S+K + LPI+++ + G+
Sbjct: 468 VHKETNLTVSAGIAPNKMLAKICSDKNKPNGQFYLPFDRESIKSFMQDLPIRRIPGV-GR 526
Query: 61 LGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIARGISGEEVQA--RLLPK 116
+ L + +G+ T GD+ + + + + +G +L I GI+ V+ R K
Sbjct: 527 VNERLLDAIGIKTCGDIYTHRATLSLMDKQFGLQ---FLLRIHLGIASNVVEPGKREERK 583
Query: 117 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ F R T++ Q LN+L EE++ L D E+N T+TL
Sbjct: 584 IASAKVHF---RTFSTLSDRQQILNKL-EEVAAELEDDTERNGWTGKTVTL 630
>gi|41057958|gb|AAR98936.1| SOS inducible DNA polymerase, partial [Shigella flexneri 5a str.
M90T]
Length = 324
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|146298645|ref|YP_001193236.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gi|146153063|gb|ABQ03917.1| DNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 360
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS +NKP Q TV + L+ LPI+K + GK+
Sbjct: 134 RIFNEVGLTASAGISVNKFVAKIASDINKPNGQKTVNPDEIIPFLEELPIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LG+ T DL S + L++ +G +G + +++ RGI EV+ + KS +
Sbjct: 193 TTEKMYQLGIFTGSDLKSKSLEFLEKHFG-KSGAFYYSVVRGIHNSEVKPHRITKSVAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F ++S L QL ER+ LE+ + H ++ K SD +
Sbjct: 252 HTFD-----VNLSSEIFMLEQL-----ERIAVSLEKRLK-RHNVSGKTVTLKIKYSDFTQ 300
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 301 QTRSKTLP 308
>gi|379705975|ref|YP_005204434.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374682674|gb|AEZ62963.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 363
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK LAKLAS +KP T V + L LPI+K +G K
Sbjct: 143 IWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++GV T DLL+ E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 EKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRPNRIRKSIGSER 260
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 261 TY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 299
>gi|373956101|ref|ZP_09616061.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
gi|373892701|gb|EHQ28598.1| DNA polymerase IV [Mucilaginibacter paludis DSM 18603]
Length = 368
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG++ NK +AK+AS +NKP + S ++ ++ LP++K + GK+
Sbjct: 142 ELRLTASAGVSINKFVAKIASDINKPNGLKFIGPSGIENFMELLPVEKFFGV-GKVTAEK 200
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
++G+ T DL K +ED++ +G G + + I RG+ EVQ KS G+ +F
Sbjct: 201 MKKMGLHTGADLKKLTEDEMHRHFG-KAGRFYYQIVRGLDNREVQPHRETKSMGAEDTF- 258
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 185
L T+A + L+++ ++ R LE+ + T+TL K SD + S
Sbjct: 259 -AYDLTTLAEMNAELDKIAVTVANR----LERYQLKGRTVTLKV---KYSDFKQITRNQS 310
Query: 186 KSCP---LRYGTAKIQEDTFNLFQAG 208
+ P L TA ++ F F+ G
Sbjct: 311 SAAPIADLESITATAKQLLFTSFEEG 336
>gi|119476993|ref|ZP_01617274.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
gi|119449800|gb|EAW31037.1| DNA polymerase IV [marine gamma proteobacterium HTCC2143]
Length = 388
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 87/164 (53%), Gaps = 4/164 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T SAG+A NK LAK+ S NKP +P + V + ++P+ ++ + GK+
Sbjct: 156 RVKESVGITLSAGVAPNKFLAKIGSDWNKPNGLCVIPPARVDAFVQAMPVDRLFGV-GKV 214
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +G+ T GDL FS +L E +G + G+ L++++RGI V+ + KS
Sbjct: 215 TAERLHRMGIQTCGDLRAFSIFQLSERFG-SFGSRLYDLSRGIDDRAVKTGRIRKSLSVE 273
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 165
+FP L + S L L ++L+ RL + +Q+K A+ +
Sbjct: 274 HTFPSD--LSAIDSCLEQLPDLFDQLTTRLQTLNDQSKGAAYRV 315
>gi|41057938|gb|AAR98926.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057940|gb|AAR98927.1| SOS inducible DNA polymerase, partial [Escherichia coli]
gi|41057956|gb|AAR98935.1| SOS inducible DNA polymerase, partial [Shigella sonnei]
Length = 324
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|19568893|gb|AAL91958.1|AF483095_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|19568883|gb|AAL91953.1|AF483090_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|51892170|ref|YP_074861.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
gi|81610604|sp|Q67QM6.1|DPO4_SYMTH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|51855859|dbj|BAD40017.1| DinP-like DNA-damage-inducible protein [Symbiobacterium
thermophilum IAM 14863]
Length = 361
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++ K LAKLAS M KP T + + + LL +LP++K+ +G +L
Sbjct: 131 ELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPVRKLWGVGPASEQAL 190
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LG+ T GDLL + D L++ +G L +ARGI V KS G +FP
Sbjct: 191 -HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVPYREAKSIGEENTFP 248
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + +L++L E ++ L +L + A T+T+
Sbjct: 249 ------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>gi|255085274|ref|XP_002505068.1| predicted protein [Micromonas sp. RCC299]
gi|226520337|gb|ACO66326.1| predicted protein [Micromonas sp. RCC299]
Length = 236
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 45/60 (75%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
VL +T FT S G+AHNKMLAKLAS NKP +QT V +V +++SLP++ +K LGGKLG
Sbjct: 174 VLHQTGFTMSGGVAHNKMLAKLASARNKPNKQTAVSARAVTEMMESLPMRSIKGLGGKLG 233
>gi|383809839|ref|ZP_09965352.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
gi|383447374|gb|EID50358.1| ImpB/MucB/SamB family protein [Rothia aeria F0474]
Length = 445
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E CSAGI+ NK LAK+AS +KP VP V+ LD +P+ K+ +G +
Sbjct: 153 RIADELSLPCSAGISINKFLAKMASTGSKPNGLWVVPPHRVQEFLDPMPVNKLWGVGARS 212
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T L NE G+ TV L +F L +G G+ L+ +ARGI V + KS G+
Sbjct: 213 AT-LLNEYGIYTVAQLREFDTQWLCGRFGNAAGSHLYALARGIDHRPVVTERVEKSMGAE 271
Query: 122 KSF 124
+F
Sbjct: 272 HTF 274
>gi|422373049|ref|ZP_16453380.1| DNA polymerase IV [Escherichia coli MS 60-1]
gi|324015566|gb|EGB84785.1| DNA polymerase IV [Escherichia coli MS 60-1]
Length = 351
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218703546|ref|YP_002411065.1| DNA polymerase IV [Escherichia coli UMN026]
gi|293403377|ref|ZP_06647468.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298378989|ref|ZP_06988870.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300899474|ref|ZP_07117722.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|387605765|ref|YP_006094621.1| DNA polymerase IV [Escherichia coli 042]
gi|419937299|ref|ZP_14454208.1| DNA polymerase IV [Escherichia coli 576-1]
gi|432351904|ref|ZP_19595216.1| DNA polymerase IV [Escherichia coli KTE2]
gi|432400372|ref|ZP_19643133.1| DNA polymerase IV [Escherichia coli KTE26]
gi|432429401|ref|ZP_19671865.1| DNA polymerase IV [Escherichia coli KTE181]
gi|432459232|ref|ZP_19701398.1| DNA polymerase IV [Escherichia coli KTE204]
gi|432474291|ref|ZP_19716304.1| DNA polymerase IV [Escherichia coli KTE208]
gi|432492561|ref|ZP_19734401.1| DNA polymerase IV [Escherichia coli KTE213]
gi|432520899|ref|ZP_19758066.1| DNA polymerase IV [Escherichia coli KTE228]
gi|432541115|ref|ZP_19777992.1| DNA polymerase IV [Escherichia coli KTE235]
gi|432629807|ref|ZP_19865760.1| DNA polymerase IV [Escherichia coli KTE80]
gi|432639371|ref|ZP_19875218.1| DNA polymerase IV [Escherichia coli KTE83]
gi|432664449|ref|ZP_19900047.1| DNA polymerase IV [Escherichia coli KTE116]
gi|432773442|ref|ZP_20007734.1| DNA polymerase IV [Escherichia coli KTE54]
gi|432837814|ref|ZP_20071308.1| DNA polymerase IV [Escherichia coli KTE140]
gi|432884160|ref|ZP_20099185.1| DNA polymerase IV [Escherichia coli KTE158]
gi|432909829|ref|ZP_20117077.1| DNA polymerase IV [Escherichia coli KTE190]
gi|433017218|ref|ZP_20205491.1| DNA polymerase IV [Escherichia coli KTE105]
gi|433051502|ref|ZP_20238748.1| DNA polymerase IV [Escherichia coli KTE122]
gi|433066408|ref|ZP_20253260.1| DNA polymerase IV [Escherichia coli KTE128]
gi|433157182|ref|ZP_20342062.1| DNA polymerase IV [Escherichia coli KTE177]
gi|433176648|ref|ZP_20361125.1| DNA polymerase IV [Escherichia coli KTE82]
gi|433201685|ref|ZP_20385499.1| DNA polymerase IV [Escherichia coli KTE95]
gi|59889801|emb|CAH19157.1| Damage inducible protein P [Escherichia coli 042]
gi|218430643|emb|CAR11509.1| DNA polymerase IV [Escherichia coli UMN026]
gi|284920065|emb|CBG33122.1| DNA polymerase IV [Escherichia coli 042]
gi|291429230|gb|EFF02250.1| DNA polymerase IV [Escherichia coli FVEC1412]
gi|298280102|gb|EFI21606.1| DNA polymerase IV [Escherichia coli FVEC1302]
gi|300356953|gb|EFJ72823.1| DNA polymerase IV [Escherichia coli MS 198-1]
gi|388398069|gb|EIL59011.1| DNA polymerase IV [Escherichia coli 576-1]
gi|430880894|gb|ELC04158.1| DNA polymerase IV [Escherichia coli KTE2]
gi|430930487|gb|ELC50988.1| DNA polymerase IV [Escherichia coli KTE26]
gi|430947998|gb|ELC67680.1| DNA polymerase IV [Escherichia coli KTE181]
gi|430992835|gb|ELD09196.1| DNA polymerase IV [Escherichia coli KTE204]
gi|431010231|gb|ELD24579.1| DNA polymerase IV [Escherichia coli KTE208]
gi|431013536|gb|ELD27266.1| DNA polymerase IV [Escherichia coli KTE213]
gi|431045862|gb|ELD56000.1| DNA polymerase IV [Escherichia coli KTE228]
gi|431064734|gb|ELD73593.1| DNA polymerase IV [Escherichia coli KTE235]
gi|431174927|gb|ELE74959.1| DNA polymerase IV [Escherichia coli KTE80]
gi|431185687|gb|ELE85392.1| DNA polymerase IV [Escherichia coli KTE83]
gi|431205008|gb|ELF03518.1| DNA polymerase IV [Escherichia coli KTE116]
gi|431321128|gb|ELG08743.1| DNA polymerase IV [Escherichia coli KTE54]
gi|431392151|gb|ELG75752.1| DNA polymerase IV [Escherichia coli KTE140]
gi|431420388|gb|ELH02673.1| DNA polymerase IV [Escherichia coli KTE158]
gi|431447905|gb|ELH28624.1| DNA polymerase IV [Escherichia coli KTE190]
gi|431537801|gb|ELI13914.1| DNA polymerase IV [Escherichia coli KTE105]
gi|431576189|gb|ELI48888.1| DNA polymerase IV [Escherichia coli KTE122]
gi|431592583|gb|ELI63155.1| DNA polymerase IV [Escherichia coli KTE128]
gi|431682845|gb|ELJ48493.1| DNA polymerase IV [Escherichia coli KTE177]
gi|431711199|gb|ELJ75553.1| DNA polymerase IV [Escherichia coli KTE82]
gi|431726787|gb|ELJ90556.1| DNA polymerase IV [Escherichia coli KTE95]
Length = 351
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|445382141|ref|ZP_21427208.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
gi|445394949|ref|ZP_21428942.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748710|gb|ELW73666.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5461]
gi|444748845|gb|ELW73795.1| DNA polymerase IV [Streptococcus thermophilus MTCC 5460]
Length = 367
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|95931101|ref|ZP_01313827.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
gi|95132846|gb|EAT14519.1| DNA-directed DNA polymerase [Desulfuromonas acetoxidans DSM 684]
Length = 380
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ETE T SAG+++NK LAK+AS +KPA T + + LPI++ + GK+
Sbjct: 132 RIHRETELTASAGVSYNKFLAKVASDCHKPAGLTVITPDQASDFIAQLPIRRFFGV-GKV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+T DLLK+ E +L +G G + + IARGI V A H
Sbjct: 191 TEKKMLRLGITCGADLLKYPETELIRLFG-KQGRFFYRIARGIDERPVVA------HRQR 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS L + + + L+E++ L + A+T+TL
Sbjct: 244 KSIGNETTLSEDIRNRDQMLTILSALAEKIEGRLAHYQTSAYTITL 289
>gi|171779234|ref|ZP_02920205.1| hypothetical protein STRINF_01082 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282290|gb|EDT47717.1| DNA polymerase IV [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
Length = 364
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK LAKLAS +KP T V + L LPI+K +G K
Sbjct: 144 IWQEVRLTCSAGVSYNKFLAKLASDYDKPKGLTLVLPEDAQDFLKKLPIEKFHGVGKKSV 203
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++GV T DLL+ E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 204 EKL-HQMGVFTGADLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVRPNRIRKSIGSER 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++ + L A ++ +++ + R+ L +N ++ + L
Sbjct: 262 TY--SKLLYKDADIKSEISK----NTRRVVDSLMRNNKVGRIVVL 300
>gi|41057946|gb|AAR98930.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|432858656|ref|ZP_20085059.1| DNA polymerase IV [Escherichia coli KTE146]
gi|431408412|gb|ELG91598.1| DNA polymerase IV [Escherichia coli KTE146]
Length = 351
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057944|gb|AAR98929.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|85816953|gb|EAQ38137.1| DNA polymerase IV [Dokdonia donghaensis MED134]
Length = 370
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 9/167 (5%)
Query: 2 QVLKE-TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
Q +KE T SAGI+ NK +AK+AS +NKP Q T+P V L+ L IKK +G K
Sbjct: 132 QCIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIKKFYGIGKK 191
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ G+ T DL S++ L +++G +G + ++I RGI EV+ + KS +
Sbjct: 192 TAEKMYLH-GIFTGMDLKLKSKEYLSDNFG-KSGAYYYDIVRGIQHSEVKPNRIRKSLAA 249
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + S L +L E ++E + LE++K T+TL
Sbjct: 250 ERTFR-----ENITSEIFMLEKL-EHIAEEVERRLEKSKVAGKTITL 290
>gi|300788116|ref|YP_003768407.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|384151547|ref|YP_005534363.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|399539999|ref|YP_006552661.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|299797630|gb|ADJ48005.1| DNA polymerase IV [Amycolatopsis mediterranei U32]
gi|340529701|gb|AEK44906.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
gi|398320769|gb|AFO79716.1| DNA polymerase IV [Amycolatopsis mediterranei S699]
Length = 404
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V E TCS G+A K +AKLASGM KP VP + L LP+ + +G +
Sbjct: 145 RVAAEHGITCSVGVAKVKFVAKLASGMAKPDGMVVVPAAETLAFLHPLPVSALWGVGART 204
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG+ T+ D+ F ++L++S G G L+ +A G+ V A KS G+
Sbjct: 205 EEHLRR-LGLATIADVAAFPPERLKKSLGTAAGEHLYRLAHGVDERSVVAESAEKSIGAE 263
Query: 122 KSF 124
+F
Sbjct: 264 HTF 266
>gi|300691327|ref|YP_003752322.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
gi|299078387|emb|CBJ51037.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum PSI07]
Length = 362
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 134 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERLFGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI +VQ + KS
Sbjct: 193 TAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQIRKSVSVE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ QH L L ++L+ R+
Sbjct: 252 ETYAT--DLRTLDDCQHELTILVDQLAARV 279
>gi|293408387|ref|ZP_06652226.1| DNA polymerase IV [Escherichia coli B354]
gi|291471565|gb|EFF14048.1| DNA polymerase IV [Escherichia coli B354]
Length = 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|223932767|ref|ZP_03624765.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|302023273|ref|ZP_07248484.1| DNA polymerase IV [Streptococcus suis 05HAS68]
gi|330832046|ref|YP_004400871.1| DNA polymerase IV [Streptococcus suis ST3]
gi|386583321|ref|YP_006079724.1| DNA polymerase IV [Streptococcus suis D9]
gi|223898600|gb|EEF64963.1| DNA-directed DNA polymerase [Streptococcus suis 89/1591]
gi|329306269|gb|AEB80685.1| DNA polymerase IV [Streptococcus suis ST3]
gi|353735467|gb|AER16476.1| DNA polymerase IV [Streptococcus suis D9]
Length = 355
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPYGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSIGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 263 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|331671823|ref|ZP_08372619.1| DNA polymerase IV [Escherichia coli TA280]
gi|331070812|gb|EGI42171.1| DNA polymerase IV [Escherichia coli TA280]
Length = 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|110804358|ref|YP_687878.1| DNA polymerase IV [Shigella flexneri 5 str. 8401]
gi|424836826|ref|ZP_18261463.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
gi|110613906|gb|ABF02573.1| damage-inducible protein P [Shigella flexneri 5 str. 8401]
gi|383465878|gb|EID60899.1| DNA polymerase IV [Shigella flexneri 5a str. M90T]
Length = 334
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 113 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 171
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 172 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 230
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 231 TM--------AEDIHHWSE--CEAIIERLYPELERR 256
>gi|225869213|ref|YP_002745161.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
gi|225702489|emb|CAX00406.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus]
Length = 367
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+ TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +
Sbjct: 148 QLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-H 206
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
E+GV T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 207 EMGVYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRMRKSISSERTY--A 263
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP--S 185
+ L A ++ L++ + R+ LE NK++ + L + R P +
Sbjct: 264 KLLYQEADIKVELSK----NARRVADLLEANKKLGRIIVLKVRYADFTTLTKRVSLPELT 319
Query: 186 KSCPLRYGTAKIQEDTFNLFQAGLR 210
+ L A+ D+ QAG+R
Sbjct: 320 RDARLIDQVARELFDSLEEHQAGIR 344
>gi|406659771|ref|ZP_11067909.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
gi|405577880|gb|EKB52028.1| DNA-directed DNA polymerase IV [Streptococcus iniae 9117]
Length = 364
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 2/120 (1%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T V + L +LPI+K +G K +
Sbjct: 145 QEVHLTCSAGVSYNKFLAKLASDYEKPHGLTLVLPEDAQNFLAALPIEKFHGVGKKSVET 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L N +GV DLL+ SE +L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 205 L-NAMGVYKGADLLELSEMQLIDQFG-RFGYDLYRKARGISLSPVKPDRIRKSIGSERTY 262
>gi|41057948|gb|AAR98931.1| SOS inducible DNA polymerase, partial [Shigella boydii]
Length = 324
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|218550064|ref|YP_002383855.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|416895677|ref|ZP_11925561.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|417114256|ref|ZP_11965634.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|422782942|ref|ZP_16835727.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|422802135|ref|ZP_16850629.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|432430401|ref|ZP_19672847.1| DNA polymerase IV [Escherichia coli KTE187]
gi|432600770|ref|ZP_19837026.1| DNA polymerase IV [Escherichia coli KTE66]
gi|432842572|ref|ZP_20075994.1| DNA polymerase IV [Escherichia coli KTE141]
gi|432848028|ref|ZP_20079900.1| DNA polymerase IV [Escherichia coli KTE144]
gi|433206413|ref|ZP_20390118.1| DNA polymerase IV [Escherichia coli KTE97]
gi|218357605|emb|CAQ90244.1| DNA polymerase IV [Escherichia fergusonii ATCC 35469]
gi|323965213|gb|EGB60671.1| impB/mucB/samB family protein [Escherichia coli M863]
gi|323976250|gb|EGB71343.1| impB/mucB/samB family protein [Escherichia coli TW10509]
gi|327254575|gb|EGE66191.1| DNA polymerase IV [Escherichia coli STEC_7v]
gi|386141860|gb|EIG83006.1| DNA polymerase IV [Escherichia coli 1.2741]
gi|430956759|gb|ELC75429.1| DNA polymerase IV [Escherichia coli KTE187]
gi|431144809|gb|ELE46503.1| DNA polymerase IV [Escherichia coli KTE66]
gi|431397599|gb|ELG81045.1| DNA polymerase IV [Escherichia coli KTE141]
gi|431402377|gb|ELG85689.1| DNA polymerase IV [Escherichia coli KTE144]
gi|431733416|gb|ELJ96852.1| DNA polymerase IV [Escherichia coli KTE97]
Length = 351
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057950|gb|AAR98932.1| SOS inducible DNA polymerase, partial [Shigella flexneri]
Length = 322
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|421531833|ref|ZP_15978210.1| DNA polymerase IV, partial [Streptococcus agalactiae STIR-CD-17]
gi|403642934|gb|EJZ03734.1| DNA polymerase IV, partial [Streptococcus agalactiae STIR-CD-17]
Length = 253
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 35 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 94
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G + ARGI+ V+ + KS GS K++
Sbjct: 95 -HALGVYTGEDLLSLSEVSLIDMFG-RFGYDRYRKARGINASPVKPDRVRKSIGSEKTY- 151
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 152 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 188
>gi|419298502|ref|ZP_13840520.1| DNA polymerase IV [Escherichia coli DEC11C]
gi|378157078|gb|EHX18120.1| DNA polymerase IV [Escherichia coli DEC11C]
Length = 357
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 136 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 194
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 195 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 253
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 254 TM--------AEDIHHWSE--CEAIIERLYPELERR 279
>gi|416293780|ref|ZP_11650545.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|420323949|ref|ZP_14825736.1| DNA polymerase IV [Shigella flexneri CCH060]
gi|320186906|gb|EFW61624.1| DNA polymerase IV [Shigella flexneri CDC 796-83]
gi|391257297|gb|EIQ16415.1| DNA polymerase IV [Shigella flexneri CCH060]
Length = 350
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 129 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 187
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 188 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 246
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 247 TM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|91209319|ref|YP_539305.1| DNA polymerase IV [Escherichia coli UTI89]
gi|110640467|ref|YP_668195.1| DNA polymerase IV [Escherichia coli 536]
gi|117622533|ref|YP_851446.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|191171433|ref|ZP_03032982.1| DNA polymerase IV [Escherichia coli F11]
gi|218557187|ref|YP_002390100.1| DNA polymerase IV [Escherichia coli S88]
gi|237707750|ref|ZP_04538231.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|331645437|ref|ZP_08346541.1| DNA polymerase IV [Escherichia coli M605]
gi|386597994|ref|YP_006099500.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|386605783|ref|YP_006112083.1| DNA polymerase IV [Escherichia coli UM146]
gi|416334115|ref|ZP_11671134.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|417082657|ref|ZP_11950885.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|417287701|ref|ZP_12074987.1| DNA polymerase IV [Escherichia coli TW07793]
gi|417660855|ref|ZP_12310436.1| DNA polymerase 4 [Escherichia coli AA86]
gi|419915704|ref|ZP_14434064.1| DNA polymerase IV [Escherichia coli KD1]
gi|419945739|ref|ZP_14462174.1| DNA polymerase IV [Escherichia coli HM605]
gi|422358413|ref|ZP_16439072.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|422748672|ref|ZP_16802585.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|422752926|ref|ZP_16806753.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|422838798|ref|ZP_16886770.1| DNA polymerase IV [Escherichia coli H397]
gi|425298462|ref|ZP_18688512.1| DNA polymerase IV [Escherichia coli 07798]
gi|432361031|ref|ZP_19604228.1| DNA polymerase IV [Escherichia coli KTE5]
gi|432405138|ref|ZP_19647861.1| DNA polymerase IV [Escherichia coli KTE28]
gi|432464294|ref|ZP_19706402.1| DNA polymerase IV [Escherichia coli KTE205]
gi|432469580|ref|ZP_19711635.1| DNA polymerase IV [Escherichia coli KTE206]
gi|432572272|ref|ZP_19808764.1| DNA polymerase IV [Escherichia coli KTE55]
gi|432582388|ref|ZP_19818798.1| DNA polymerase IV [Escherichia coli KTE57]
gi|432586577|ref|ZP_19822949.1| DNA polymerase IV [Escherichia coli KTE58]
gi|432596147|ref|ZP_19832436.1| DNA polymerase IV [Escherichia coli KTE62]
gi|432711936|ref|ZP_19946988.1| DNA polymerase IV [Escherichia coli KTE8]
gi|432753075|ref|ZP_19987644.1| DNA polymerase IV [Escherichia coli KTE22]
gi|432777132|ref|ZP_20011386.1| DNA polymerase IV [Escherichia coli KTE59]
gi|432785925|ref|ZP_20020093.1| DNA polymerase IV [Escherichia coli KTE65]
gi|432800550|ref|ZP_20034541.1| DNA polymerase IV [Escherichia coli KTE84]
gi|432819598|ref|ZP_20053312.1| DNA polymerase IV [Escherichia coli KTE118]
gi|432825726|ref|ZP_20059383.1| DNA polymerase IV [Escherichia coli KTE123]
gi|432892907|ref|ZP_20105012.1| DNA polymerase IV [Escherichia coli KTE165]
gi|433003791|ref|ZP_20192229.1| DNA polymerase IV [Escherichia coli KTE227]
gi|433010996|ref|ZP_20199401.1| DNA polymerase IV [Escherichia coli KTE229]
gi|433071227|ref|ZP_20257936.1| DNA polymerase IV [Escherichia coli KTE129]
gi|433076410|ref|ZP_20262986.1| DNA polymerase IV [Escherichia coli KTE131]
gi|433118779|ref|ZP_20304496.1| DNA polymerase IV [Escherichia coli KTE157]
gi|433152409|ref|ZP_20337379.1| DNA polymerase IV [Escherichia coli KTE176]
gi|433162032|ref|ZP_20346800.1| DNA polymerase IV [Escherichia coli KTE179]
gi|433166968|ref|ZP_20351652.1| DNA polymerase IV [Escherichia coli KTE180]
gi|433181738|ref|ZP_20366046.1| DNA polymerase IV [Escherichia coli KTE85]
gi|122424895|sp|Q1RFU0.1|DPO4_ECOUT RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122958567|sp|Q0TL85.1|DPO4_ECOL5 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027664|sp|A1A7U2.1|DPO4_ECOK1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|91070893|gb|ABE05774.1| damage-inducible protein P; DNA polymerase IV [Escherichia coli
UTI89]
gi|110342059|gb|ABG68296.1| DNA-damage-inducible protein P (DinP) [Escherichia coli 536]
gi|115511657|gb|ABI99731.1| DNA polymerase IV [Escherichia coli APEC O1]
gi|190908367|gb|EDV67957.1| DNA polymerase IV [Escherichia coli F11]
gi|218363956|emb|CAR01621.1| DNA polymerase IV [Escherichia coli S88]
gi|226898960|gb|EEH85219.1| damage-inducible protein P [Escherichia sp. 3_2_53FAA]
gi|294491183|gb|ADE89939.1| DNA polymerase IV [Escherichia coli IHE3034]
gi|307628267|gb|ADN72571.1| DNA polymerase IV [Escherichia coli UM146]
gi|315287741|gb|EFU47144.1| DNA polymerase IV [Escherichia coli MS 110-3]
gi|320197284|gb|EFW71900.1| DNA polymerase IV [Escherichia coli WV_060327]
gi|323953127|gb|EGB48995.1| impB/mucB/samB family protein [Escherichia coli H252]
gi|323958691|gb|EGB54392.1| impB/mucB/samB family protein [Escherichia coli H263]
gi|330910073|gb|EGH38583.1| DNA polymerase 4 [Escherichia coli AA86]
gi|331045599|gb|EGI17725.1| DNA polymerase IV [Escherichia coli M605]
gi|355353195|gb|EHG02365.1| DNA polymerase IV [Escherichia coli cloneA_i1]
gi|371611722|gb|EHO00242.1| DNA polymerase IV [Escherichia coli H397]
gi|386248486|gb|EII94658.1| DNA polymerase IV [Escherichia coli TW07793]
gi|388383451|gb|EIL45222.1| DNA polymerase IV [Escherichia coli KD1]
gi|388414873|gb|EIL74817.1| DNA polymerase IV [Escherichia coli HM605]
gi|408221465|gb|EKI45398.1| DNA polymerase IV [Escherichia coli 07798]
gi|430891266|gb|ELC13802.1| DNA polymerase IV [Escherichia coli KTE5]
gi|430932634|gb|ELC53053.1| DNA polymerase IV [Escherichia coli KTE28]
gi|430997045|gb|ELD13312.1| DNA polymerase IV [Escherichia coli KTE205]
gi|431000294|gb|ELD16356.1| DNA polymerase IV [Escherichia coli KTE206]
gi|431111366|gb|ELE15270.1| DNA polymerase IV [Escherichia coli KTE55]
gi|431119404|gb|ELE22403.1| DNA polymerase IV [Escherichia coli KTE57]
gi|431123857|gb|ELE26511.1| DNA polymerase IV [Escherichia coli KTE58]
gi|431133814|gb|ELE35780.1| DNA polymerase IV [Escherichia coli KTE62]
gi|431259451|gb|ELF51814.1| DNA polymerase IV [Escherichia coli KTE8]
gi|431305856|gb|ELF94173.1| DNA polymerase IV [Escherichia coli KTE22]
gi|431330706|gb|ELG17970.1| DNA polymerase IV [Escherichia coli KTE59]
gi|431341856|gb|ELG28852.1| DNA polymerase IV [Escherichia coli KTE65]
gi|431351446|gb|ELG38233.1| DNA polymerase IV [Escherichia coli KTE84]
gi|431370600|gb|ELG56393.1| DNA polymerase IV [Escherichia coli KTE118]
gi|431375110|gb|ELG60454.1| DNA polymerase IV [Escherichia coli KTE123]
gi|431425359|gb|ELH07429.1| DNA polymerase IV [Escherichia coli KTE165]
gi|431517112|gb|ELH94634.1| DNA polymerase IV [Escherichia coli KTE227]
gi|431519208|gb|ELH96660.1| DNA polymerase IV [Escherichia coli KTE229]
gi|431594676|gb|ELI64955.1| DNA polymerase IV [Escherichia coli KTE129]
gi|431602470|gb|ELI71903.1| DNA polymerase IV [Escherichia coli KTE131]
gi|431649763|gb|ELJ17105.1| DNA polymerase IV [Escherichia coli KTE157]
gi|431678465|gb|ELJ44461.1| DNA polymerase IV [Escherichia coli KTE176]
gi|431692822|gb|ELJ58245.1| DNA polymerase IV [Escherichia coli KTE179]
gi|431694762|gb|ELJ60107.1| DNA polymerase IV [Escherichia coli KTE180]
gi|431712483|gb|ELJ76777.1| DNA polymerase IV [Escherichia coli KTE85]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432552289|ref|ZP_19789022.1| DNA polymerase IV [Escherichia coli KTE47]
gi|431087216|gb|ELD93215.1| DNA polymerase IV [Escherichia coli KTE47]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|24111721|ref|NP_706231.1| DNA polymerase IV [Shigella flexneri 2a str. 301]
gi|30061848|ref|NP_836019.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|384541857|ref|YP_005725918.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|415859559|ref|ZP_11533758.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|417700311|ref|ZP_12349456.1| DNA polymerase IV [Shigella flexneri K-218]
gi|417705742|ref|ZP_12354814.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|417710878|ref|ZP_12359885.1| DNA polymerase IV [Shigella flexneri K-272]
gi|417715544|ref|ZP_12364480.1| DNA polymerase IV [Shigella flexneri K-227]
gi|417721265|ref|ZP_12370115.1| DNA polymerase IV [Shigella flexneri K-304]
gi|417726647|ref|ZP_12375394.1| DNA polymerase IV [Shigella flexneri K-671]
gi|417731847|ref|ZP_12380519.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|417737137|ref|ZP_12385746.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|417741777|ref|ZP_12390331.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|418253475|ref|ZP_12878500.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
gi|420318723|ref|ZP_14820582.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|420329470|ref|ZP_14831180.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|420339821|ref|ZP_14841352.1| DNA polymerase IV [Shigella flexneri K-404]
gi|81723732|sp|Q83M86.1|DPO4_SHIFL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|24050502|gb|AAN41938.1| damage-inducible protein P [Shigella flexneri 2a str. 301]
gi|30040092|gb|AAP15825.1| damage-inducible protein P [Shigella flexneri 2a str. 2457T]
gi|281599641|gb|ADA72625.1| Damage-inducible protein P [Shigella flexneri 2002017]
gi|313646637|gb|EFS11096.1| DNA polymerase IV [Shigella flexneri 2a str. 2457T]
gi|332761629|gb|EGJ91909.1| DNA polymerase IV [Shigella flexneri 4343-70]
gi|332761724|gb|EGJ92003.1| DNA polymerase IV [Shigella flexneri 2747-71]
gi|332764446|gb|EGJ94679.1| DNA polymerase IV [Shigella flexneri K-671]
gi|332768578|gb|EGJ98760.1| impB/mucB/samB family protein [Shigella flexneri 2930-71]
gi|333008732|gb|EGK28196.1| DNA polymerase IV [Shigella flexneri K-218]
gi|333009710|gb|EGK29160.1| DNA polymerase IV [Shigella flexneri VA-6]
gi|333010782|gb|EGK30208.1| DNA polymerase IV [Shigella flexneri K-272]
gi|333021280|gb|EGK40533.1| DNA polymerase IV [Shigella flexneri K-227]
gi|333022110|gb|EGK41353.1| DNA polymerase IV [Shigella flexneri K-304]
gi|391255077|gb|EIQ14230.1| DNA polymerase IV [Shigella flexneri 2850-71]
gi|391260219|gb|EIQ19283.1| DNA polymerase IV [Shigella flexneri K-1770]
gi|391274563|gb|EIQ33370.1| DNA polymerase IV [Shigella flexneri K-404]
gi|397901349|gb|EJL17695.1| impB/mucB/samB family protein [Shigella flexneri 6603-63]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|417826337|ref|ZP_12472917.1| impB/mucB/samB family protein [Shigella flexneri J1713]
gi|335578251|gb|EGM63476.1| impB/mucB/samB family protein [Shigella flexneri J1713]
Length = 343
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 122 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 181 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 239
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 240 TM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|425303750|ref|ZP_18693556.1| DNA polymerase IV [Escherichia coli N1]
gi|408232494|gb|EKI55692.1| DNA polymerase IV [Escherichia coli N1]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|325849681|ref|ZP_08170884.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480022|gb|EGC83100.1| ImpB/MucB/SamB family protein [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 347
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QVLK+T S GI++NK LAKLAS NKP + + +L+ L IKK+ LG K
Sbjct: 124 QVLKQTGIGVSIGISYNKFLAKLASDWNKPFGIKEINEDDIPNILEDLDIKKVHGLGNKS 183
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ ++G+ + DLLK ++ L+ +G G +++ + RG +V+ K G
Sbjct: 184 VEKLK-DIGIYKIKDLLKLDQEFLESLFG-KQGRYVYKVIRGEDKRKVETS--TKRKSIG 239
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ F + K + + ++ +E+S ++ +DL+ A+T+ L
Sbjct: 240 REFTFRKNTKDMNILYSYI----DEISRKIENDLKAKDIKAYTINL 281
>gi|170679693|ref|YP_001742392.1| DNA polymerase IV [Escherichia coli SMS-3-5]
gi|170517411|gb|ACB15589.1| DNA polymerase IV [Escherichia coli SMS-3-5]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|386585380|ref|YP_006081782.1| DNA polymerase IV [Streptococcus suis D12]
gi|353737526|gb|AER18534.1| DNA polymerase IV [Streptococcus suis D12]
Length = 355
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSIGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 263 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>gi|300934932|ref|ZP_07149986.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|432678680|ref|ZP_19914084.1| DNA polymerase IV [Escherichia coli KTE143]
gi|300459838|gb|EFK23331.1| DNA polymerase IV [Escherichia coli MS 21-1]
gi|431225324|gb|ELF22528.1| DNA polymerase IV [Escherichia coli KTE143]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|301019021|ref|ZP_07183237.1| DNA polymerase IV [Escherichia coli MS 196-1]
gi|299882426|gb|EFI90637.1| DNA polymerase IV [Escherichia coli MS 196-1]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|218688123|ref|YP_002396335.1| DNA polymerase IV [Escherichia coli ED1a]
gi|218698823|ref|YP_002406452.1| DNA polymerase IV [Escherichia coli IAI39]
gi|222155074|ref|YP_002555213.1| DNA polymerase IV [Escherichia coli LF82]
gi|386622636|ref|YP_006142364.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|387615594|ref|YP_006118616.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|422831010|ref|ZP_16879161.1| DNA polymerase IV [Escherichia coli B093]
gi|433196857|ref|ZP_20380789.1| DNA polymerase IV [Escherichia coli KTE94]
gi|218368809|emb|CAR16557.1| DNA polymerase IV [Escherichia coli IAI39]
gi|218425687|emb|CAR06479.1| DNA polymerase IV [Escherichia coli ED1a]
gi|222032079|emb|CAP74818.1| DNA polymerase IV [Escherichia coli LF82]
gi|312944855|gb|ADR25682.1| DNA polymerase IV [Escherichia coli O83:H1 str. NRG 857C]
gi|349736374|gb|AEQ11080.1| DNA polymerase IV [Escherichia coli O7:K1 str. CE10]
gi|371603091|gb|EHN91770.1| DNA polymerase IV [Escherichia coli B093]
gi|431726006|gb|ELJ89834.1| DNA polymerase IV [Escherichia coli KTE94]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|16128217|ref|NP_414766.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|74310874|ref|YP_309293.1| DNA polymerase IV [Shigella sonnei Ss046]
gi|170021341|ref|YP_001726295.1| DNA polymerase IV [Escherichia coli ATCC 8739]
gi|170079858|ref|YP_001729178.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188492262|ref|ZP_02999532.1| DNA polymerase IV [Escherichia coli 53638]
gi|194438229|ref|ZP_03070321.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218552837|ref|YP_002385750.1| DNA polymerase IV [Escherichia coli IAI1]
gi|218693716|ref|YP_002401383.1| DNA polymerase IV [Escherichia coli 55989]
gi|238899621|ref|YP_002925417.1| DNA polymerase IV [Escherichia coli BW2952]
gi|251783788|ref|YP_002998092.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253774744|ref|YP_003037575.1| DNA polymerase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160345|ref|YP_003043453.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|254287148|ref|YP_003052896.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|300947288|ref|ZP_07161491.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|300955690|ref|ZP_07168040.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|301643542|ref|ZP_07243584.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|312970357|ref|ZP_07784538.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|331640760|ref|ZP_08341895.1| DNA polymerase IV [Escherichia coli H736]
gi|383176868|ref|YP_005454873.1| DNA polymerase IV [Shigella sonnei 53G]
gi|386279278|ref|ZP_10056964.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386596884|ref|YP_006093284.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|386612415|ref|YP_006132081.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|386703468|ref|YP_006167315.1| DNA polymerase IV [Escherichia coli P12b]
gi|387610725|ref|YP_006113841.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|387619993|ref|YP_006127620.1| DNA polymerase IV [Escherichia coli DH1]
gi|388476342|ref|YP_488526.1| DNA polymerase IV [Escherichia coli str. K-12 substr. W3110]
gi|404373579|ref|ZP_10978822.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|407467706|ref|YP_006785852.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483577|ref|YP_006780726.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484117|ref|YP_006771663.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414574461|ref|ZP_11431672.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|415777326|ref|ZP_11488578.1| DNA polymerase IV [Escherichia coli 3431]
gi|416262047|ref|ZP_11640622.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|417126868|ref|ZP_11974422.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|417135509|ref|ZP_11980294.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|417246600|ref|ZP_12039701.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|417274019|ref|ZP_12061363.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|417279671|ref|ZP_12066977.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|417293063|ref|ZP_12080343.1| DNA polymerase IV [Escherichia coli B41]
gi|417611291|ref|ZP_12261766.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|417616602|ref|ZP_12267038.1| DNA polymerase IV [Escherichia coli G58-1]
gi|417803595|ref|ZP_12450633.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|417836883|ref|ZP_12483129.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|417867906|ref|ZP_12512939.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|417946822|ref|ZP_12590031.1| DNA polymerase IV [Escherichia coli XH140A]
gi|417978142|ref|ZP_12618915.1| DNA polymerase IV [Escherichia coli XH001]
gi|418042361|ref|ZP_12680560.1| DNA polymerase IV [Escherichia coli W26]
gi|418261973|ref|ZP_12883684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|418959675|ref|ZP_13511572.1| DNA polymerase IV [Escherichia coli J53]
gi|419140734|ref|ZP_13685491.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|419152086|ref|ZP_13696674.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|419157543|ref|ZP_13702072.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|419162541|ref|ZP_13707021.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|419173609|ref|ZP_13717467.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|419368536|ref|ZP_13909667.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|419389670|ref|ZP_13930511.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|419394844|ref|ZP_13935629.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|419400199|ref|ZP_13940933.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|419405371|ref|ZP_13946075.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|419410862|ref|ZP_13951536.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|419806627|ref|ZP_14331726.1| DNA polymerase IV [Escherichia coli AI27]
gi|419811151|ref|ZP_14336028.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|419927843|ref|ZP_14445567.1| DNA polymerase IV [Escherichia coli 541-1]
gi|419942197|ref|ZP_14458821.1| DNA polymerase IV [Escherichia coli 75]
gi|420356882|ref|ZP_14857902.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|420361856|ref|ZP_14862784.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|420378556|ref|ZP_14878058.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|421776172|ref|ZP_16212778.1| DNA polymerase IV [Escherichia coli AD30]
gi|422764577|ref|ZP_16818325.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|422769504|ref|ZP_16823195.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|422776897|ref|ZP_16830550.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|422784882|ref|ZP_16837621.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|422791043|ref|ZP_16843746.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|422816251|ref|ZP_16864466.1| DNA polymerase IV [Escherichia coli M919]
gi|422990955|ref|ZP_16981726.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|422992894|ref|ZP_16983658.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|422998103|ref|ZP_16988859.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|423006588|ref|ZP_16997331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|423008209|ref|ZP_16998947.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|423022396|ref|ZP_17013099.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|423027550|ref|ZP_17018243.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|423033387|ref|ZP_17024071.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|423036253|ref|ZP_17026927.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041373|ref|ZP_17032040.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423048059|ref|ZP_17038716.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423051643|ref|ZP_17040451.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058608|ref|ZP_17047404.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423701027|ref|ZP_17675486.1| DNA polymerase IV [Escherichia coli H730]
gi|425118330|ref|ZP_18520070.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|425270942|ref|ZP_18662457.1| DNA polymerase IV [Escherichia coli TW15901]
gi|425281616|ref|ZP_18672737.1| DNA polymerase IV [Escherichia coli TW00353]
gi|425286835|ref|ZP_18677773.1| DNA polymerase IV [Escherichia coli 3006]
gi|429722453|ref|ZP_19257351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774532|ref|ZP_19306535.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429779795|ref|ZP_19311748.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783847|ref|ZP_19315760.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429789185|ref|ZP_19321060.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429795415|ref|ZP_19327241.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429801341|ref|ZP_19333119.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429804973|ref|ZP_19336720.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429809784|ref|ZP_19341486.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429815544|ref|ZP_19347203.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429821132|ref|ZP_19352745.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429906805|ref|ZP_19372774.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429911001|ref|ZP_19376957.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916840|ref|ZP_19382780.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921878|ref|ZP_19387799.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927696|ref|ZP_19393602.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931628|ref|ZP_19397523.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429933230|ref|ZP_19399120.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938884|ref|ZP_19404758.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946527|ref|ZP_19412382.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949176|ref|ZP_19415024.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957442|ref|ZP_19423271.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|432368234|ref|ZP_19611340.1| DNA polymerase IV [Escherichia coli KTE10]
gi|432415204|ref|ZP_19657838.1| DNA polymerase IV [Escherichia coli KTE44]
gi|432483893|ref|ZP_19725821.1| DNA polymerase IV [Escherichia coli KTE212]
gi|432529562|ref|ZP_19766618.1| DNA polymerase IV [Escherichia coli KTE233]
gi|432562169|ref|ZP_19798801.1| DNA polymerase IV [Escherichia coli KTE51]
gi|432578942|ref|ZP_19815377.1| DNA polymerase IV [Escherichia coli KTE56]
gi|432625807|ref|ZP_19861795.1| DNA polymerase IV [Escherichia coli KTE77]
gi|432635595|ref|ZP_19871484.1| DNA polymerase IV [Escherichia coli KTE81]
gi|432659507|ref|ZP_19895170.1| DNA polymerase IV [Escherichia coli KTE111]
gi|432669117|ref|ZP_19904669.1| DNA polymerase IV [Escherichia coli KTE119]
gi|432684113|ref|ZP_19919435.1| DNA polymerase IV [Escherichia coli KTE156]
gi|432690117|ref|ZP_19925367.1| DNA polymerase IV [Escherichia coli KTE161]
gi|432702820|ref|ZP_19937951.1| DNA polymerase IV [Escherichia coli KTE171]
gi|432717260|ref|ZP_19952262.1| DNA polymerase IV [Escherichia coli KTE9]
gi|432735711|ref|ZP_19970503.1| DNA polymerase IV [Escherichia coli KTE42]
gi|432763540|ref|ZP_19997993.1| DNA polymerase IV [Escherichia coli KTE48]
gi|432830266|ref|ZP_20063875.1| DNA polymerase IV [Escherichia coli KTE135]
gi|432879528|ref|ZP_20096530.1| DNA polymerase IV [Escherichia coli KTE154]
gi|432944820|ref|ZP_20141225.1| DNA polymerase IV [Escherichia coli KTE196]
gi|432953143|ref|ZP_20145698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|433041743|ref|ZP_20229279.1| DNA polymerase IV [Escherichia coli KTE117]
gi|433046297|ref|ZP_20233738.1| DNA polymerase IV [Escherichia coli KTE120]
gi|433172011|ref|ZP_20356579.1| DNA polymerase IV [Escherichia coli KTE232]
gi|442594020|ref|ZP_21011944.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442600405|ref|ZP_21018082.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|450238531|ref|ZP_21898924.1| DNA polymerase IV [Escherichia coli S17]
gi|2501652|sp|Q47155.1|DPO4_ECOLI RecName: Full=DNA polymerase IV; Short=Pol IV
gi|123617967|sp|Q3Z5A4.1|DPO4_SHISS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189027665|sp|B1J100.1|DPO4_ECOLC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|984587|dbj|BAA07593.1| DinP [Escherichia coli W3110]
gi|1552799|gb|AAB08651.1| DinP [Escherichia coli]
gi|1786425|gb|AAC73335.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MG1655]
gi|4902967|dbj|BAA77901.1| DNA polymerase IV [Escherichia coli str. K12 substr. W3110]
gi|73854351|gb|AAZ87058.1| damage-inducible protein P [Shigella sonnei Ss046]
gi|169756269|gb|ACA78968.1| DNA-directed DNA polymerase [Escherichia coli ATCC 8739]
gi|169887693|gb|ACB01400.1| DNA polymerase IV [Escherichia coli str. K-12 substr. DH10B]
gi|188487461|gb|EDU62564.1| DNA polymerase IV [Escherichia coli 53638]
gi|194422893|gb|EDX38888.1| DNA polymerase IV [Escherichia coli 101-1]
gi|218350448|emb|CAU96135.1| DNA polymerase IV [Escherichia coli 55989]
gi|218359605|emb|CAQ97146.1| DNA polymerase IV [Escherichia coli IAI1]
gi|238860838|gb|ACR62836.1| DNA polymerase IV [Escherichia coli BW2952]
gi|242376061|emb|CAQ30746.1| DNA polymerase IV (Y-family DNA polymerase; translesion DNA
synthesis) [Escherichia coli BL21(DE3)]
gi|253325788|gb|ACT30390.1| DNA-directed DNA polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972246|gb|ACT37917.1| DNA polymerase IV [Escherichia coli B str. REL606]
gi|253976455|gb|ACT42125.1| DNA polymerase IV [Escherichia coli BL21(DE3)]
gi|260450573|gb|ACX40995.1| DNA-directed DNA polymerase [Escherichia coli DH1]
gi|300317441|gb|EFJ67225.1| DNA polymerase IV [Escherichia coli MS 175-1]
gi|300453089|gb|EFK16709.1| DNA polymerase IV [Escherichia coli MS 116-1]
gi|301078042|gb|EFK92848.1| DNA polymerase IV [Escherichia coli MS 146-1]
gi|309700461|emb|CBI99755.1| DNA polymerase IV [Escherichia coli ETEC H10407]
gi|310337006|gb|EFQ02144.1| DNA polymerase IV [Escherichia coli 1827-70]
gi|315134916|dbj|BAJ42075.1| DNA polymerase IV [Escherichia coli DH1]
gi|315616806|gb|EFU97423.1| DNA polymerase IV [Escherichia coli 3431]
gi|320176695|gb|EFW51732.1| DNA polymerase IV [Shigella dysenteriae CDC 74-1112]
gi|323943351|gb|EGB39504.1| impB/mucB/samB family protein [Escherichia coli E482]
gi|323945385|gb|EGB41439.1| impB/mucB/samB family protein [Escherichia coli H120]
gi|323963542|gb|EGB59100.1| impB/mucB/samB family protein [Escherichia coli H489]
gi|323972412|gb|EGB67619.1| impB/mucB/samB family protein [Escherichia coli TA007]
gi|324115582|gb|EGC09521.1| impB/mucB/samB family protein [Escherichia coli E1167]
gi|331037558|gb|EGI09778.1| DNA polymerase IV [Escherichia coli H736]
gi|332341584|gb|AEE54918.1| DNA polymerase IV DinB [Escherichia coli UMNK88]
gi|340730476|gb|EGR59807.1| DNA polymerase IV [Escherichia coli O104:H4 str. 01-09591]
gi|340741871|gb|EGR76014.1| DNA polymerase IV [Escherichia coli O104:H4 str. LB226692]
gi|341921195|gb|EGT70797.1| hypothetical protein C22711_4831 [Escherichia coli O104:H4 str.
C227-11]
gi|342361447|gb|EGU25585.1| DNA polymerase IV [Escherichia coli XH140A]
gi|344192205|gb|EGV46302.1| DNA polymerase IV [Escherichia coli XH001]
gi|345366378|gb|EGW98469.1| DNA polymerase IV [Escherichia coli STEC_EH250]
gi|345382492|gb|EGX13371.1| DNA polymerase IV [Escherichia coli G58-1]
gi|354858087|gb|EHF18538.1| DNA polymerase IV [Escherichia coli O104:H4 str. 04-8351]
gi|354859941|gb|EHF20388.1| DNA polymerase IV [Escherichia coli O104:H4 str. C227-11]
gi|354866637|gb|EHF27060.1| DNA polymerase IV [Escherichia coli O104:H4 str. C236-11]
gi|354876971|gb|EHF37331.1| DNA polymerase IV [Escherichia coli O104:H4 str. 09-7901]
gi|354879280|gb|EHF39618.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4404]
gi|354883867|gb|EHF44181.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-3677]
gi|354885668|gb|EHF45960.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4522]
gi|354888735|gb|EHF48989.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4623]
gi|354901336|gb|EHF61463.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905567|gb|EHF65650.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908074|gb|EHF68130.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354918546|gb|EHF78502.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354922234|gb|EHF82149.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-4632 C4]
gi|359331082|dbj|BAL37529.1| DNA polymerase IV [Escherichia coli str. K-12 substr. MDS42]
gi|378000067|gb|EHV63141.1| DNA polymerase IV [Escherichia coli DEC6A]
gi|378003670|gb|EHV66710.1| DNA polymerase IV [Escherichia coli DEC6C]
gi|378014734|gb|EHV77632.1| DNA polymerase IV [Escherichia coli DEC6D]
gi|378017007|gb|EHV79882.1| impB/mucB/samB family protein [Escherichia coli DEC6E]
gi|378038204|gb|EHW00721.1| impB/mucB/samB family protein [Escherichia coli DEC7B]
gi|378222886|gb|EHX83120.1| DNA polymerase IV [Escherichia coli DEC14A]
gi|378244963|gb|EHY04902.1| impB/mucB/samB family protein [Escherichia coli DEC15A]
gi|378251696|gb|EHY11592.1| impB/mucB/samB family protein [Escherichia coli DEC15B]
gi|378252030|gb|EHY11924.1| impB/mucB/samB family protein [Escherichia coli DEC15C]
gi|378257760|gb|EHY17596.1| impB/mucB/samB family protein [Escherichia coli DEC15D]
gi|378261353|gb|EHY21147.1| impB/mucB/samB family protein [Escherichia coli DEC15E]
gi|383101636|gb|AFG39145.1| DNA polymerase IV [Escherichia coli P12b]
gi|383474725|gb|EID66705.1| DNA polymerase IV [Escherichia coli W26]
gi|384377367|gb|EIE35261.1| DNA polymerase IV [Escherichia coli J53]
gi|384470373|gb|EIE54485.1| DNA polymerase IV [Escherichia coli AI27]
gi|385156093|gb|EIF18092.1| DNA polymerase IV [Escherichia coli O32:H37 str. P4]
gi|385540238|gb|EIF87061.1| DNA polymerase IV [Escherichia coli M919]
gi|385713513|gb|EIG50445.1| DNA polymerase IV [Escherichia coli H730]
gi|386123629|gb|EIG72220.1| DNA polymerase IV [Escherichia sp. 4_1_40B]
gi|386145118|gb|EIG91582.1| DNA polymerase IV [Escherichia coli 97.0246]
gi|386153363|gb|EIH04652.1| DNA polymerase IV [Escherichia coli 5.0588]
gi|386209228|gb|EII19715.1| DNA polymerase IV [Escherichia coli 9.0111]
gi|386233494|gb|EII65475.1| DNA polymerase IV [Escherichia coli 2.4168]
gi|386237770|gb|EII74714.1| DNA polymerase IV [Escherichia coli 3.2303]
gi|386252635|gb|EIJ02326.1| DNA polymerase IV [Escherichia coli B41]
gi|388398494|gb|EIL59385.1| DNA polymerase IV [Escherichia coli 75]
gi|388406661|gb|EIL67057.1| DNA polymerase IV [Escherichia coli 541-1]
gi|391289580|gb|EIQ48072.1| DNA polymerase IV [Shigella sonnei 3226-85]
gi|391289700|gb|EIQ48187.1| DNA polymerase IV [Shigella sonnei 3233-85]
gi|391297130|gb|EIQ55197.1| impB/mucB/samB family protein [Shigella sonnei 4822-66]
gi|391307028|gb|EIQ64768.1| DNA polymerase IV [Shigella dysenteriae 225-75]
gi|397903383|gb|EJL19684.1| impB/mucB/samB family protein [Shigella sonnei str. Moseley]
gi|404292949|gb|EJZ49726.1| DNA polymerase IV [Escherichia sp. 1_1_43]
gi|406779279|gb|AFS58703.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055874|gb|AFS75925.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063741|gb|AFS84788.1| DNA polymerase IV [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408199329|gb|EKI24531.1| DNA polymerase IV [Escherichia coli TW15901]
gi|408206458|gb|EKI31260.1| DNA polymerase IV [Escherichia coli TW00353]
gi|408219187|gb|EKI43353.1| DNA polymerase IV [Escherichia coli 3006]
gi|408458911|gb|EKJ82696.1| DNA polymerase IV [Escherichia coli AD30]
gi|408573916|gb|EKK49721.1| DNA polymerase IV [Escherichia coli 8.0569]
gi|429351348|gb|EKY88068.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02030]
gi|429352051|gb|EKY88767.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02033-1]
gi|429352809|gb|EKY89518.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02092]
gi|429366722|gb|EKZ03323.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02093]
gi|429367633|gb|EKZ04225.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02281]
gi|429370128|gb|EKZ06694.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02318]
gi|429382515|gb|EKZ18979.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-02913]
gi|429384748|gb|EKZ21202.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03943]
gi|429385271|gb|EKZ21724.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-03439]
gi|429396964|gb|EKZ33311.1| DNA polymerase IV [Escherichia coli O104:H4 str. 11-04080]
gi|429399210|gb|EKZ35531.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9450]
gi|429399499|gb|EKZ35819.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9990]
gi|429410254|gb|EKZ46476.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4984]
gi|429412154|gb|EKZ48351.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4986]
gi|429419139|gb|EKZ55277.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4987]
gi|429427698|gb|EKZ63778.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5603]
gi|429434542|gb|EKZ70566.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-4988]
gi|429435366|gb|EKZ71384.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-5604]
gi|429439924|gb|EKZ75903.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0465]
gi|429444507|gb|EKZ80452.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-6006]
gi|429450811|gb|EKZ86703.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456301|gb|EKZ92146.1| DNA polymerase IV [Escherichia coli O104:H4 str. Ec11-9941]
gi|430889126|gb|ELC11795.1| DNA polymerase IV [Escherichia coli KTE10]
gi|430944387|gb|ELC64484.1| DNA polymerase IV [Escherichia coli KTE44]
gi|431019546|gb|ELD32942.1| DNA polymerase IV [Escherichia coli KTE212]
gi|431057654|gb|ELD67077.1| DNA polymerase IV [Escherichia coli KTE233]
gi|431100334|gb|ELE05338.1| DNA polymerase IV [Escherichia coli KTE51]
gi|431109270|gb|ELE13236.1| DNA polymerase IV [Escherichia coli KTE56]
gi|431165705|gb|ELE66037.1| DNA polymerase IV [Escherichia coli KTE77]
gi|431174381|gb|ELE74427.1| DNA polymerase IV [Escherichia coli KTE81]
gi|431203978|gb|ELF02561.1| DNA polymerase IV [Escherichia coli KTE111]
gi|431214156|gb|ELF11988.1| DNA polymerase IV [Escherichia coli KTE119]
gi|431225659|gb|ELF22853.1| DNA polymerase IV [Escherichia coli KTE156]
gi|431231751|gb|ELF27435.1| DNA polymerase IV [Escherichia coli KTE161]
gi|431247804|gb|ELF42018.1| DNA polymerase IV [Escherichia coli KTE171]
gi|431266864|gb|ELF58397.1| DNA polymerase IV [Escherichia coli KTE9]
gi|431287982|gb|ELF78768.1| DNA polymerase IV [Escherichia coli KTE42]
gi|431313688|gb|ELG01657.1| DNA polymerase IV [Escherichia coli KTE48]
gi|431380028|gb|ELG64928.1| DNA polymerase IV [Escherichia coli KTE135]
gi|431414302|gb|ELG97045.1| DNA polymerase IV [Escherichia coli KTE154]
gi|431463836|gb|ELH43959.1| DNA polymerase IV [Escherichia coli KTE196]
gi|431470804|gb|ELH50698.1| DNA polymerase IV [Escherichia coli KTE197]
gi|431560660|gb|ELI34169.1| DNA polymerase IV [Escherichia coli KTE117]
gi|431573448|gb|ELI46247.1| DNA polymerase IV [Escherichia coli KTE120]
gi|431696825|gb|ELJ61978.1| DNA polymerase IV [Escherichia coli KTE232]
gi|441606093|emb|CCP97224.1| DNA polymerase IV [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441650606|emb|CCQ03511.1| DNA polymerase IV [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|449325468|gb|EMD15372.1| DNA polymerase IV [Escherichia coli S17]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568863|gb|AAL91943.1|AF483080_1 DNA polymerase DinB [Escherichia coli]
Length = 241
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 76 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 134
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 135 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 193
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 194 TM--------AEDIHHWSE--CEAIIERLYPELERR 219
>gi|215485381|ref|YP_002327812.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312964711|ref|ZP_07778962.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|417754070|ref|ZP_12402165.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|418995265|ref|ZP_13542884.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|419000425|ref|ZP_13547987.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|419005962|ref|ZP_13553418.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|419011786|ref|ZP_13559154.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|419016730|ref|ZP_13564056.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|419022310|ref|ZP_13569558.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|419027236|ref|ZP_13574436.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|419033383|ref|ZP_13580481.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|419038018|ref|ZP_13585078.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
gi|215263453|emb|CAS07774.1| DNA polymerase IV [Escherichia coli O127:H6 str. E2348/69]
gi|312290732|gb|EFR18610.1| DNA polymerase IV [Escherichia coli 2362-75]
gi|377850207|gb|EHU15174.1| impB/mucB/samB family protein [Escherichia coli DEC1A]
gi|377850763|gb|EHU15718.1| impB/mucB/samB family protein [Escherichia coli DEC1C]
gi|377853915|gb|EHU18805.1| impB/mucB/samB family protein [Escherichia coli DEC1B]
gi|377864039|gb|EHU28837.1| DNA polymerase IV [Escherichia coli DEC1D]
gi|377866704|gb|EHU31468.1| impB/mucB/samB family protein [Escherichia coli DEC1E]
gi|377868792|gb|EHU33519.1| DNA polymerase IV [Escherichia coli DEC2A]
gi|377879016|gb|EHU43589.1| impB/mucB/samB family protein [Escherichia coli DEC2B]
gi|377883802|gb|EHU48320.1| impB/mucB/samB family protein [Escherichia coli DEC2D]
gi|377885738|gb|EHU50229.1| impB/mucB/samB family protein [Escherichia coli DEC2C]
gi|377898262|gb|EHU62622.1| impB/mucB/samB family protein [Escherichia coli DEC2E]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|432379911|ref|ZP_19622875.1| DNA polymerase IV [Escherichia coli KTE15]
gi|432385678|ref|ZP_19628579.1| DNA polymerase IV [Escherichia coli KTE16]
gi|432512492|ref|ZP_19749736.1| DNA polymerase IV [Escherichia coli KTE224]
gi|432609957|ref|ZP_19846131.1| DNA polymerase IV [Escherichia coli KTE72]
gi|432644660|ref|ZP_19880465.1| DNA polymerase IV [Escherichia coli KTE86]
gi|432654294|ref|ZP_19890014.1| DNA polymerase IV [Escherichia coli KTE93]
gi|432697601|ref|ZP_19932774.1| DNA polymerase IV [Escherichia coli KTE169]
gi|432744220|ref|ZP_19978926.1| DNA polymerase IV [Escherichia coli KTE43]
gi|432902591|ref|ZP_20112298.1| DNA polymerase IV [Escherichia coli KTE194]
gi|432942026|ref|ZP_20139442.1| DNA polymerase IV [Escherichia coli KTE183]
gi|432983976|ref|ZP_20172716.1| DNA polymerase IV [Escherichia coli KTE215]
gi|433037183|ref|ZP_20224807.1| DNA polymerase IV [Escherichia coli KTE113]
gi|433099795|ref|ZP_20285912.1| DNA polymerase IV [Escherichia coli KTE145]
gi|433142794|ref|ZP_20327977.1| DNA polymerase IV [Escherichia coli KTE168]
gi|433186970|ref|ZP_20371107.1| DNA polymerase IV [Escherichia coli KTE88]
gi|430910511|gb|ELC31821.1| DNA polymerase IV [Escherichia coli KTE16]
gi|430911890|gb|ELC33141.1| DNA polymerase IV [Escherichia coli KTE15]
gi|431045079|gb|ELD55328.1| DNA polymerase IV [Escherichia coli KTE224]
gi|431151780|gb|ELE52791.1| DNA polymerase IV [Escherichia coli KTE72]
gi|431184873|gb|ELE84616.1| DNA polymerase IV [Escherichia coli KTE86]
gi|431195720|gb|ELE94684.1| DNA polymerase IV [Escherichia coli KTE93]
gi|431247268|gb|ELF41506.1| DNA polymerase IV [Escherichia coli KTE169]
gi|431296065|gb|ELF85793.1| DNA polymerase IV [Escherichia coli KTE43]
gi|431437832|gb|ELH19339.1| DNA polymerase IV [Escherichia coli KTE194]
gi|431456001|gb|ELH36350.1| DNA polymerase IV [Escherichia coli KTE183]
gi|431506412|gb|ELH85008.1| DNA polymerase IV [Escherichia coli KTE215]
gi|431556226|gb|ELI30015.1| DNA polymerase IV [Escherichia coli KTE113]
gi|431623391|gb|ELI92062.1| DNA polymerase IV [Escherichia coli KTE145]
gi|431667270|gb|ELJ33860.1| DNA polymerase IV [Escherichia coli KTE168]
gi|431710438|gb|ELJ74814.1| DNA polymerase IV [Escherichia coli KTE88]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|365924462|ref|ZP_09447225.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265373|ref|ZP_14767934.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394428158|gb|EJF00745.1| DNA polymerase IV [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 361
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T T S GI+HNK LAK+AS +KP T + + L LPI+K + +G K
Sbjct: 135 EIFSKTGLTSSTGISHNKFLAKMASDYHKPIGTTLIREEDILSFLAPLPIEKFRGVGVKT 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +EL + T DLLK SE +L S+G G + RGI V+ + KS G+
Sbjct: 195 AEKM-HELNINTGLDLLKKSELELIASFG-KMGEIFYQHVRGIDERPVEWKRERKSMGNE 252
Query: 122 KSFPGPRALKTVASVQHWLNQLC 144
++F +ALK+ V+ N L
Sbjct: 253 RTF--AQALKSTTEVEEMFNYLA 273
>gi|448089441|ref|XP_004196808.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|448093718|ref|XP_004197839.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359378230|emb|CCE84489.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
gi|359379261|emb|CCE83458.1| Piso0_004034 [Millerozyma farinosa CBS 7064]
Length = 693
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 9/160 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ K FT S G+A NK++AKLA G KP QT + S++ L++ + M+ +GGK
Sbjct: 252 EIFKVLGFTTSGGVARNKVMAKLAGGFLKPDNQTIILNSNINSFLENFELDDMRSMGGKA 311
Query: 62 GTSLQNELGVTT---------VGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 112
G + LGV T + D E K + S T ++++ RG EE+ R
Sbjct: 312 GQLILKTLGVPTDTKSNTIAYIRDNFTLGELKDKLSNDSVTSEKIYDLVRGNYSEELTFR 371
Query: 113 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLC 152
KS S K+F + T+ WL +L R+
Sbjct: 372 TDVKSMMSRKNFTSRTYVTTLKDAIDWLKVFSGDLVNRIV 411
>gi|306813279|ref|ZP_07447472.1| DNA polymerase IV [Escherichia coli NC101]
gi|432970436|ref|ZP_20159315.1| DNA polymerase IV [Escherichia coli KTE207]
gi|433081206|ref|ZP_20267682.1| DNA polymerase IV [Escherichia coli KTE133]
gi|305854042|gb|EFM54481.1| DNA polymerase IV [Escherichia coli NC101]
gi|431486207|gb|ELH65858.1| DNA polymerase IV [Escherichia coli KTE207]
gi|431606254|gb|ELI75633.1| DNA polymerase IV [Escherichia coli KTE133]
Length = 350
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 129 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 187
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 188 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 246
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 247 TM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|186471995|ref|YP_001859337.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815]
gi|184194327|gb|ACC72291.1| DNA-directed DNA polymerase [Burkholderia phymatum STM815]
Length = 384
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V T TCS +A NK+LAK+ S ++KP T + + + L +K+ +G K
Sbjct: 151 VRAATGLTCSICVAPNKLLAKIGSELDKPDGLTILTPEDIPSRIWPLAARKINGIGPKAS 210
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LG+ TVGDL + D LQ ++G TWL ++ARGI V PKS
Sbjct: 211 ERLAT-LGINTVGDLAHAAPDLLQSNFGLKYATWLTHVARGIDERPVVVESEPKSMSRET 269
Query: 123 SFP---GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL 165
+F PR + ++ +LC ++E DL++ + HT+
Sbjct: 270 TFERDLHPRHDR--PALSESFTRLCVRVAE----DLQRKGYVGHTI 309
>gi|41057952|gb|AAR98933.1| SOS inducible DNA polymerase, partial [Shigella dysenteriae]
Length = 324
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|419146340|ref|ZP_13691037.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|421680998|ref|ZP_16120832.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
gi|378002027|gb|EHV65082.1| impB/mucB/samB family protein [Escherichia coli DEC6B]
gi|404342029|gb|EJZ68427.1| impB/mucB/samB family protein [Shigella flexneri 1485-80]
Length = 343
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 122 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 181 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 239
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 240 TM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|19568887|gb|AAL91955.1|AF483092_1 DNA polymerase DinB [Escherichia coli]
Length = 331
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 119 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 177
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 178 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 236
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 237 TM--------AEDIHHWSE--CEAIIERLYPELERR 262
>gi|19568901|gb|AAL91962.1|AF483099_1 DNA polymerase DinB [Escherichia coli]
gi|19568903|gb|AAL91963.1|AF483100_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|420334490|ref|ZP_14836112.1| DNA polymerase IV [Shigella flexneri K-315]
gi|391268181|gb|EIQ27109.1| DNA polymerase IV [Shigella flexneri K-315]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|187733383|ref|YP_001879027.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
gi|226738240|sp|B2U3S3.1|DPO4_SHIB3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|187430375|gb|ACD09649.1| DNA polymerase IV [Shigella boydii CDC 3083-94]
Length = 354
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 133 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 192 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 251 TM--------AEDIHHWSE--CEAIIERLYPELERR 276
>gi|161528150|ref|YP_001581976.1| DNA-directed DNA polymerase [Nitrosopumilus maritimus SCM1]
gi|226738238|sp|A9A3A9.1|DPO4_NITMS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160339451|gb|ABX12538.1| DNA-directed DNA polymerase [Nitrosopumilus maritimus SCM1]
Length = 364
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ +CS GI+ NK+++K+AS KP T V V+G L+SL I+ + +G K
Sbjct: 139 IREKTKLSCSIGISPNKLISKIASDFQKPDGLTIVSPEKVEGFLESLKIRDIPGIGKKTE 198
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 119
E+ + T+GD+ + L + +G +GT+++N RGI E V+ R HG
Sbjct: 199 QRF-TEMNLETIGDVKRLDVFTLNKEFGRKSGTYIYNAVRGIDDELVKEREPSIQHG 254
>gi|157156229|ref|YP_001461421.1| DNA polymerase IV [Escherichia coli E24377A]
gi|191165703|ref|ZP_03027542.1| DNA polymerase IV [Escherichia coli B7A]
gi|193063270|ref|ZP_03044361.1| DNA polymerase IV [Escherichia coli E22]
gi|194427631|ref|ZP_03060179.1| DNA polymerase IV [Escherichia coli B171]
gi|260842478|ref|YP_003220256.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|260853485|ref|YP_003227376.1| DNA polymerase IV [Escherichia coli O26:H11 str. 11368]
gi|260866431|ref|YP_003232833.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300823445|ref|ZP_07103575.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300921971|ref|ZP_07138117.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|301325439|ref|ZP_07218925.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|331666565|ref|ZP_08367439.1| DNA polymerase IV [Escherichia coli TA271]
gi|331675915|ref|ZP_08376632.1| DNA polymerase IV [Escherichia coli H591]
gi|415780327|ref|ZP_11490550.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|415801746|ref|ZP_11499726.1| DNA polymerase IV [Escherichia coli E128010]
gi|415814397|ref|ZP_11506017.1| DNA polymerase IV [Escherichia coli LT-68]
gi|415821217|ref|ZP_11510231.1| DNA polymerase IV [Escherichia coli OK1180]
gi|416342416|ref|ZP_11676647.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|417139526|ref|ZP_11982948.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|417173878|ref|ZP_12003674.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|417186796|ref|ZP_12011827.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|417190773|ref|ZP_12013369.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|417216634|ref|ZP_12023306.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|417252579|ref|ZP_12044338.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|417268239|ref|ZP_12055600.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|417299321|ref|ZP_12086551.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|417311526|ref|ZP_12098251.1| DNA polymerase IV [Escherichia coli PCN033]
gi|417589919|ref|ZP_12240640.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|417595109|ref|ZP_12245781.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|418945175|ref|ZP_13498083.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|419195265|ref|ZP_13738677.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|419201317|ref|ZP_13744547.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|419207244|ref|ZP_13750373.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|419213691|ref|ZP_13756723.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|419219514|ref|ZP_13762471.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|419224983|ref|ZP_13767875.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|419230880|ref|ZP_13773673.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|419236112|ref|ZP_13778864.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|419241701|ref|ZP_13784351.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|419247104|ref|ZP_13789721.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|419252871|ref|ZP_13795422.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|419258875|ref|ZP_13801336.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|419264918|ref|ZP_13807305.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|419270564|ref|ZP_13812897.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|419276359|ref|ZP_13818629.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|419281933|ref|ZP_13824156.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|419287730|ref|ZP_13829848.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|419293066|ref|ZP_13835127.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|419304792|ref|ZP_13846706.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|419309819|ref|ZP_13851696.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|419315128|ref|ZP_13856958.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|419320903|ref|ZP_13862647.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|419327148|ref|ZP_13868781.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|419332519|ref|ZP_13874085.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|419339504|ref|ZP_13880981.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|419379121|ref|ZP_13920102.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|419384373|ref|ZP_13925280.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|419868034|ref|ZP_14390337.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|419885738|ref|ZP_14406415.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|419888861|ref|ZP_14409324.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|419897859|ref|ZP_14417433.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|419901234|ref|ZP_14420604.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|419908192|ref|ZP_14426938.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|419949116|ref|ZP_14465373.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|420090813|ref|ZP_14602576.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|420097127|ref|ZP_14608432.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|420102342|ref|ZP_14613355.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|420110151|ref|ZP_14620184.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|420116243|ref|ZP_14625686.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|420122888|ref|ZP_14631791.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|420127544|ref|ZP_14636169.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|420133582|ref|ZP_14641796.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|420389587|ref|ZP_14888860.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|422835044|ref|ZP_16883102.1| DNA polymerase IV [Escherichia coli E101]
gi|422957405|ref|ZP_16969619.1| DNA polymerase IV [Escherichia coli H494]
gi|422976448|ref|ZP_16977049.1| DNA polymerase IV [Escherichia coli TA124]
gi|423709983|ref|ZP_17684333.1| DNA polymerase IV [Escherichia coli B799]
gi|424748379|ref|ZP_18176525.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|424759498|ref|ZP_18187162.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|424770422|ref|ZP_18197624.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|425377041|ref|ZP_18761460.1| DNA polymerase IV [Escherichia coli EC1865]
gi|432375351|ref|ZP_19618365.1| DNA polymerase IV [Escherichia coli KTE12]
gi|432812388|ref|ZP_20046237.1| DNA polymerase IV [Escherichia coli KTE101]
gi|432833329|ref|ZP_20066877.1| DNA polymerase IV [Escherichia coli KTE136]
gi|432872913|ref|ZP_20092611.1| DNA polymerase IV [Escherichia coli KTE147]
gi|432966383|ref|ZP_20155303.1| DNA polymerase IV [Escherichia coli KTE203]
gi|450210255|ref|ZP_21894032.1| DNA polymerase IV [Escherichia coli O08]
gi|189027662|sp|A7ZHZ2.1|DPO4_ECO24 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157078259|gb|ABV17967.1| DNA polymerase IV [Escherichia coli E24377A]
gi|190904210|gb|EDV63920.1| DNA polymerase IV [Escherichia coli B7A]
gi|192931178|gb|EDV83781.1| DNA polymerase IV [Escherichia coli E22]
gi|194414401|gb|EDX30675.1| DNA polymerase IV [Escherichia coli B171]
gi|257752134|dbj|BAI23636.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. 11368]
gi|257757625|dbj|BAI29122.1| DNA polymerase IV DinB [Escherichia coli O103:H2 str. 12009]
gi|257762787|dbj|BAI34282.1| DNA polymerase IV DinB [Escherichia coli O111:H- str. 11128]
gi|300421641|gb|EFK04952.1| DNA polymerase IV [Escherichia coli MS 182-1]
gi|300524063|gb|EFK45132.1| DNA polymerase IV [Escherichia coli MS 119-7]
gi|300847737|gb|EFK75497.1| DNA polymerase IV [Escherichia coli MS 78-1]
gi|320201150|gb|EFW75733.1| DNA polymerase IV [Escherichia coli EC4100B]
gi|323158084|gb|EFZ44183.1| DNA polymerase IV [Escherichia coli EPECa14]
gi|323160304|gb|EFZ46257.1| DNA polymerase IV [Escherichia coli E128010]
gi|323171085|gb|EFZ56734.1| DNA polymerase IV [Escherichia coli LT-68]
gi|323178473|gb|EFZ64051.1| DNA polymerase IV [Escherichia coli OK1180]
gi|331065789|gb|EGI37673.1| DNA polymerase IV [Escherichia coli TA271]
gi|331076475|gb|EGI47752.1| DNA polymerase IV [Escherichia coli H591]
gi|338766893|gb|EGP21788.1| DNA polymerase IV [Escherichia coli PCN033]
gi|345346277|gb|EGW78613.1| DNA polymerase IV [Escherichia coli 2534-86]
gi|345362411|gb|EGW94563.1| DNA polymerase IV [Escherichia coli 3030-1]
gi|371593951|gb|EHN82824.1| DNA polymerase IV [Escherichia coli TA124]
gi|371598406|gb|EHN87207.1| DNA polymerase IV [Escherichia coli H494]
gi|371613370|gb|EHO01869.1| DNA polymerase IV [Escherichia coli E101]
gi|375319510|gb|EHS65649.1| DNA polymerase IV [Escherichia coli O157:H43 str. T22]
gi|378053892|gb|EHW16182.1| DNA polymerase IV [Escherichia coli DEC8A]
gi|378057556|gb|EHW19783.1| impB/mucB/samB family protein [Escherichia coli DEC8B]
gi|378063638|gb|EHW25804.1| impB/mucB/samB family protein [Escherichia coli DEC8C]
gi|378069002|gb|EHW31097.1| impB/mucB/samB family protein [Escherichia coli DEC8D]
gi|378072568|gb|EHW34625.1| impB/mucB/samB family protein [Escherichia coli DEC8E]
gi|378082703|gb|EHW44647.1| impB/mucB/samB family protein [Escherichia coli DEC9A]
gi|378083002|gb|EHW44941.1| impB/mucB/samB family protein [Escherichia coli DEC9B]
gi|378091174|gb|EHW53007.1| impB/mucB/samB family protein [Escherichia coli DEC9C]
gi|378095024|gb|EHW56814.1| impB/mucB/samB family protein [Escherichia coli DEC9D]
gi|378103286|gb|EHW64956.1| impB/mucB/samB family protein [Escherichia coli DEC9E]
gi|378108255|gb|EHW69870.1| impB/mucB/samB family protein [Escherichia coli DEC10A]
gi|378117382|gb|EHW78897.1| impB/mucB/samB family protein [Escherichia coli DEC10B]
gi|378119153|gb|EHW80648.1| impB/mucB/samB family protein [Escherichia coli DEC10C]
gi|378121509|gb|EHW82960.1| impB/mucB/samB family protein [Escherichia coli DEC10D]
gi|378134548|gb|EHW95869.1| impB/mucB/samB family protein [Escherichia coli DEC10E]
gi|378136364|gb|EHW97658.1| impB/mucB/samB family protein [Escherichia coli DEC11A]
gi|378140419|gb|EHX01646.1| impB/mucB/samB family protein [Escherichia coli DEC10F]
gi|378147177|gb|EHX08325.1| impB/mucB/samB family protein [Escherichia coli DEC11B]
gi|378152921|gb|EHX14007.1| DNA polymerase IV [Escherichia coli DEC11D]
gi|378161542|gb|EHX22518.1| DNA polymerase IV [Escherichia coli DEC11E]
gi|378175763|gb|EHX36577.1| DNA polymerase IV [Escherichia coli DEC12A]
gi|378175934|gb|EHX36745.1| impB/mucB/samB family protein [Escherichia coli DEC12B]
gi|378176918|gb|EHX37719.1| DNA polymerase IV [Escherichia coli DEC12C]
gi|378190970|gb|EHX51546.1| impB/mucB/samB family protein [Escherichia coli DEC12E]
gi|378192154|gb|EHX52720.1| impB/mucB/samB family protein [Escherichia coli DEC12D]
gi|378234266|gb|EHX94344.1| impB/mucB/samB family protein [Escherichia coli DEC14C]
gi|378237724|gb|EHX97746.1| impB/mucB/samB family protein [Escherichia coli DEC14D]
gi|385704631|gb|EIG41703.1| DNA polymerase IV [Escherichia coli B799]
gi|386157254|gb|EIH13596.1| DNA polymerase IV [Escherichia coli 97.0259]
gi|386176570|gb|EIH54049.1| DNA polymerase IV [Escherichia coli 3.2608]
gi|386181871|gb|EIH64630.1| DNA polymerase IV [Escherichia coli 93.0624]
gi|386191745|gb|EIH80486.1| DNA polymerase IV [Escherichia coli 4.0522]
gi|386193496|gb|EIH87780.1| DNA polymerase IV [Escherichia coli JB1-95]
gi|386216510|gb|EII32999.1| DNA polymerase IV [Escherichia coli 4.0967]
gi|386230597|gb|EII57952.1| DNA polymerase IV [Escherichia coli 3.3884]
gi|386257113|gb|EIJ12604.1| DNA polymerase IV [Escherichia coli 900105 (10e)]
gi|388346124|gb|EIL11866.1| DNA polymerase IV [Escherichia coli O103:H2 str. CVM9450]
gi|388348168|gb|EIL13787.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9545]
gi|388354612|gb|EIL19515.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9574]
gi|388359096|gb|EIL23450.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9570]
gi|388375707|gb|EIL38709.1| DNA polymerase IV DinB [Escherichia coli O26:H11 str. CVM10026]
gi|388376486|gb|EIL39399.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9942]
gi|388419826|gb|EIL79536.1| DNA polymerase IV [Escherichia coli CUMT8]
gi|391315132|gb|EIQ72665.1| impB/mucB/samB family protein [Escherichia coli EPEC C342-62]
gi|394385113|gb|EJE62657.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9634]
gi|394385211|gb|EJE62752.1| DNA polymerase IV [Escherichia coli O111:H8 str. CVM9602]
gi|394388729|gb|EJE65972.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10224]
gi|394404379|gb|EJE79786.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10021]
gi|394404527|gb|EJE79896.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9553]
gi|394411939|gb|EJE86120.1| DNA polymerase IV [Escherichia coli O111:H11 str. CVM9455]
gi|394418029|gb|EJE91732.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM10030]
gi|394425091|gb|EJE98115.1| DNA polymerase IV [Escherichia coli O26:H11 str. CVM9952]
gi|408310459|gb|EKJ27508.1| DNA polymerase IV [Escherichia coli EC1865]
gi|421942427|gb|EKT99761.1| DNA polymerase IV [Escherichia coli O111:H8 str. CFSAN001632]
gi|421944722|gb|EKU01967.1| DNA polymerase IV [Escherichia coli O26:H11 str. CFSAN001629]
gi|421947192|gb|EKU04275.1| DNA polymerase IV [Escherichia coli O111:H11 str. CFSAN001630]
gi|430901255|gb|ELC23223.1| DNA polymerase IV [Escherichia coli KTE12]
gi|431357280|gb|ELG43947.1| DNA polymerase IV [Escherichia coli KTE101]
gi|431388491|gb|ELG72214.1| DNA polymerase IV [Escherichia coli KTE136]
gi|431405014|gb|ELG88257.1| DNA polymerase IV [Escherichia coli KTE147]
gi|431475744|gb|ELH55548.1| DNA polymerase IV [Escherichia coli KTE203]
gi|449323141|gb|EMD13107.1| DNA polymerase IV [Escherichia coli O08]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|443309912|ref|ZP_21039589.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
gi|442780033|gb|ELR90249.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Synechocystis sp. PCC 7509]
Length = 326
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L ET T SAG++ NK LAK+ASGMNKP T + + +LPI+K +G
Sbjct: 101 ILAETSLTASAGVSVNKFLAKMASGMNKPNGLTVILPEHAVDFVAALPIEKFHGIGEVTA 160
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T + N LG+ T DL ++S+ L +G G + + IAR V+ + KS G+
Sbjct: 161 TKMNN-LGIHTGIDLKQYSQADLVRHFG-KVGHFYYLIARAEDNRIVEPNRIRKSIGAET 218
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
SF K + ++ L +L E +++ L LE + + T+TL
Sbjct: 219 SFT-----KDLDELKIMLLEL-ENIAQTLQHRLENYQALGRTITL 257
>gi|432994080|ref|ZP_20182699.1| DNA polymerase IV [Escherichia coli KTE218]
gi|433114195|ref|ZP_20300016.1| DNA polymerase IV [Escherichia coli KTE153]
gi|431510662|gb|ELH88906.1| DNA polymerase IV [Escherichia coli KTE218]
gi|431637267|gb|ELJ05365.1| DNA polymerase IV [Escherichia coli KTE153]
Length = 351
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|407462177|ref|YP_006773494.1| DNA-directed DNA polymerase [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045799|gb|AFS80552.1| DNA-directed DNA polymerase [Candidatus Nitrosopumilus koreensis
AR1]
Length = 364
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ +CS GI+ NK+++K+AS KP T V ++ L+SL I+ + +G K
Sbjct: 139 IREKTKLSCSIGISPNKLISKIASDFQKPDGLTVVSSEKIEQFLESLKIRDIPGIGKKTE 198
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
E+ T+GDL K L + +G +GT+++N RGI E V+ R H GK
Sbjct: 199 QRFA-EMNFETIGDLKKLDVFTLNKEFGRKSGTFIYNAVRGIDNEPVKKREPSIQH--GK 255
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSE 149
+ K + L +LC+E+ E
Sbjct: 256 IVTLKKDSKDYTFLLENLLELCKEVHE 282
>gi|225869835|ref|YP_002745782.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
gi|225699239|emb|CAW92538.1| DNA polymerase IV [Streptococcus equi subsp. equi 4047]
Length = 367
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+ TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +
Sbjct: 148 QLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-H 206
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 207 EMGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRMRKSISSERTY--A 263
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
+ L A ++ L++ + R+ LE NK++ + L + R P +
Sbjct: 264 KLLYQEADIKAELSK----HARRVADLLEANKKLGRIIVLKVRYADFTTLTKRVSLPELT 319
Query: 188 CPLRYGTAKIQE--DTFNLFQAGLR 210
R +E D+ QAG+R
Sbjct: 320 RDARIIDQVARELFDSLEEHQAGIR 344
>gi|126178330|ref|YP_001046295.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
gi|226738237|sp|A3CSG3.1|DPO4_METMJ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|125861124|gb|ABN56313.1| DNA-directed DNA polymerase [Methanoculleus marisnigri JR1]
Length = 360
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +ET TCS G+A K +AK+AS KP T V V G L SLP+ ++ +G K
Sbjct: 135 EVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPVGRIPGIGKKT 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G L+ + G+ TVGDL + ++ G +G + ++ARGI EVQ R KS
Sbjct: 195 GEDLR-QAGILTVGDLARRDVQEVIARLG-RSGVRVHHLARGIDDGEVQGREGCKSISRE 252
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD 154
+F A V + L +L ++++E L +D
Sbjct: 253 TTFEADTADPPV--LAGTLAELADDVAETLRAD 283
>gi|19568867|gb|AAL91945.1|AF483082_1 DNA polymerase DinB [Escherichia coli]
Length = 295
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 83 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 141
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 142 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 200
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 201 TM--------AEDIHHWSE--CEAIIERLYPELERR 226
>gi|168213536|ref|ZP_02639161.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|168217689|ref|ZP_02643314.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
gi|170714869|gb|EDT27051.1| DNA polymerase IV [Clostridium perfringens CPE str. F4969]
gi|182380253|gb|EDT77732.1| DNA polymerase IV [Clostridium perfringens NCTC 8239]
Length = 359
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +G+ DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGIFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L+++ +SE LC
Sbjct: 248 KEITLREDIEDIDEMIEILDRIAGRISESLC 278
>gi|343085717|ref|YP_004775012.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
gi|342354251|gb|AEL26781.1| DNA polymerase IV [Cyclobacterium marinum DSM 745]
Length = 358
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T SAGI++NK LAK+AS +NKP Q + + L+ LPI+K +G +
Sbjct: 131 KIKEQTGLNASAGISYNKFLAKIASDLNKPNGQAVITPGEAEAFLEKLPIEKFYGIGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ N G+ DL ++S L +G +G + I RGI EV+ + KS G
Sbjct: 191 AKKM-NGFGIYNGYDLKQYSLPFLTGRFG-KSGLHFYKIVRGIHESEVKPNRIRKSIGME 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F ++++Q L E + LE+N+ I T+T+
Sbjct: 249 RTFDN-----DLSAMQAIEASLKENILPEFFRRLEKNQAIGRTITI 289
>gi|227499298|ref|ZP_03929410.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
gi|227218649|gb|EEI83883.1| DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098]
Length = 344
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 3/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V K+T + S GI++NK LAKLAS KP T + + L + I K+ +G K
Sbjct: 123 KVFKDTGISISVGISYNKFLAKLASDWKKPHGITMIGEDDLDKFLPEISINKVHGIGKKT 182
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N++G+ V DLLK + L +++G G +++ + RG+ V L KS G
Sbjct: 183 SERL-NKIGIYKVKDLLKLDREYLLDNFG-KQGAYIYQVIRGVDKRAVNPNRLRKSIGKE 240
Query: 122 KSFP-GPRALKTVASVQHWLNQLCEE 146
++F + LK + S L++L E+
Sbjct: 241 RTFTQNTKELKILDSYLRNLSELIED 266
>gi|424100583|ref|ZP_17835780.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|424566835|ref|ZP_18007788.1| DNA polymerase IV [Escherichia coli EC4448]
gi|425370440|ref|ZP_18755434.1| DNA polymerase IV [Escherichia coli EC1864]
gi|390674241|gb|EIN50443.1| DNA polymerase IV [Escherichia coli FRIK1990]
gi|390916441|gb|EIP74899.1| DNA polymerase IV [Escherichia coli EC4448]
gi|408301573|gb|EKJ19162.1| DNA polymerase IV [Escherichia coli EC1864]
Length = 343
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 122 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 181 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 239
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 240 TM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|357235923|ref|ZP_09123266.1| DNA polymerase IV [Streptococcus criceti HS-6]
gi|356883905|gb|EHI74105.1| DNA polymerase IV [Streptococcus criceti HS-6]
Length = 365
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ + +E + TCSAG+++NK LAKLAS +KP T + + L LPI+K + GK
Sbjct: 141 LDIWQEVQLTCSAGVSYNKFLAKLASDYDKPHGLTLILPDEAEDFLKGLPIEKFYGV-GK 199
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ELGV T DLL+ E L + +G G L+ ARGIS V+ + KS GS
Sbjct: 200 QSVKRLHELGVYTGQDLLEIPEMTLIDHFG-RFGYDLYRKARGISNSPVKPNRVRKSIGS 258
Query: 121 GKSF 124
+++
Sbjct: 259 ERTY 262
>gi|91774364|ref|YP_544120.1| DNA-directed DNA polymerase [Methylobacillus flagellatus KT]
gi|91708351|gb|ABE48279.1| DNA-directed DNA polymerase [Methylobacillus flagellatus KT]
Length = 385
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T TCS GIA NK+LAK+AS ++KP T + + + LP +K+ +G K
Sbjct: 154 VQEATGLTCSIGIATNKLLAKIASDLDKPDGLTIIDEQAFHTRIWPLPARKINGIGPKAA 213
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L+ +LG+ T+ DL LQE++G + WL +ARG V PKS
Sbjct: 214 TKLE-KLGIHTIADLAMVDLALLQENFGQSYAHWLMRVARGQDDRPVVTTSTPKSMSRET 272
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R + + L L ER+ +DL+ +T+ +
Sbjct: 273 TF--ERDMHARQD-KRQLGMAFTSLCERVANDLQHKGYFGYTVGI 314
>gi|388258303|ref|ZP_10135479.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
gi|387937815|gb|EIK44370.1| DNA-directed DNA polymerase [Cellvibrio sp. BR]
Length = 355
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T SAGIA NK LAK+AS NKP Q + + V + LP+KK+ +G +
Sbjct: 129 RIQREIGITVSAGIAPNKFLAKIASDWNKPNGQFVITPAQVDSFVAQLPVKKIFGVGKAM 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ L EL + T DL K S +L + +G G+ L+ ++RGI E+ KS
Sbjct: 189 ASKLA-ELSIFTCADLQKLSVFELSQRFG-QMGSRLYKLSRGIDERELTVDRRRKSLSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F + L+ + H L L ++L+ RL
Sbjct: 247 NTF--AKDLQNLPQCLHELPALSQQLAIRL 274
>gi|424125733|ref|ZP_17858963.1| DNA polymerase IV [Escherichia coli PA9]
gi|390692917|gb|EIN67571.1| DNA polymerase IV [Escherichia coli PA9]
Length = 345
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|168750214|ref|ZP_02775236.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|168757259|ref|ZP_02782266.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|168770029|ref|ZP_02795036.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|168776129|ref|ZP_02801136.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|168782992|ref|ZP_02807999.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|168789704|ref|ZP_02814711.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|168800331|ref|ZP_02825338.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|195938634|ref|ZP_03084016.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4024]
gi|208807461|ref|ZP_03249798.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208812602|ref|ZP_03253931.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208820027|ref|ZP_03260347.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209399967|ref|YP_002268858.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|254791391|ref|YP_003076228.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|261223714|ref|ZP_05937995.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK2000]
gi|261255877|ref|ZP_05948410.1| DNA polymerase IV [Escherichia coli O157:H7 str. FRIK966]
gi|291281075|ref|YP_003497893.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|387505183|ref|YP_006157439.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|416318859|ref|ZP_11661411.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|416328254|ref|ZP_11668044.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|416781031|ref|ZP_11877075.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|416793031|ref|ZP_11882249.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|416803736|ref|ZP_11886849.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|416813945|ref|ZP_11891438.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97]
gi|416824639|ref|ZP_11896104.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|416835278|ref|ZP_11901383.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|419066306|ref|ZP_13612994.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|419073361|ref|ZP_13618935.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|419078503|ref|ZP_13623990.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|419084152|ref|ZP_13629569.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|419090203|ref|ZP_13635524.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|419096132|ref|ZP_13641377.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|419101821|ref|ZP_13646989.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|419113079|ref|ZP_13658114.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|419118591|ref|ZP_13663578.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|419124239|ref|ZP_13669147.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|419129827|ref|ZP_13674683.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|420267592|ref|ZP_14770000.1| DNA polymerase IV [Escherichia coli PA22]
gi|420273226|ref|ZP_14775560.1| DNA polymerase IV [Escherichia coli PA40]
gi|420278735|ref|ZP_14781002.1| DNA polymerase IV [Escherichia coli TW06591]
gi|420284829|ref|ZP_14787047.1| DNA polymerase IV [Escherichia coli TW10246]
gi|420290282|ref|ZP_14792450.1| DNA polymerase IV [Escherichia coli TW11039]
gi|420296005|ref|ZP_14798102.1| DNA polymerase IV [Escherichia coli TW09109]
gi|420301963|ref|ZP_14803996.1| DNA polymerase IV [Escherichia coli TW10119]
gi|420307650|ref|ZP_14809624.1| DNA polymerase IV [Escherichia coli EC1738]
gi|420313179|ref|ZP_14815090.1| DNA polymerase IV [Escherichia coli EC1734]
gi|421810416|ref|ZP_16246231.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|421821868|ref|ZP_16257312.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|424081296|ref|ZP_17818189.1| DNA polymerase IV [Escherichia coli FDA517]
gi|424087949|ref|ZP_17824244.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|424094183|ref|ZP_17829978.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|424113385|ref|ZP_17847571.1| DNA polymerase IV [Escherichia coli PA3]
gi|424131751|ref|ZP_17864590.1| DNA polymerase IV [Escherichia coli PA10]
gi|424184280|ref|ZP_17887664.1| DNA polymerase IV [Escherichia coli PA25]
gi|424261109|ref|ZP_17893562.1| DNA polymerase IV [Escherichia coli PA28]
gi|424459629|ref|ZP_17910618.1| DNA polymerase IV [Escherichia coli PA39]
gi|424466082|ref|ZP_17916308.1| DNA polymerase IV [Escherichia coli PA41]
gi|424478674|ref|ZP_17927947.1| DNA polymerase IV [Escherichia coli TW07945]
gi|424484695|ref|ZP_17933597.1| DNA polymerase IV [Escherichia coli TW09098]
gi|424490770|ref|ZP_17939228.1| DNA polymerase IV [Escherichia coli TW09195]
gi|424497905|ref|ZP_17945213.1| DNA polymerase IV [Escherichia coli EC4203]
gi|424504144|ref|ZP_17950957.1| DNA polymerase IV [Escherichia coli EC4196]
gi|424510386|ref|ZP_17956671.1| DNA polymerase IV [Escherichia coli TW14313]
gi|424517970|ref|ZP_17962432.1| DNA polymerase IV [Escherichia coli TW14301]
gi|424541876|ref|ZP_17984738.1| DNA polymerase IV [Escherichia coli EC4402]
gi|424548197|ref|ZP_17990440.1| DNA polymerase IV [Escherichia coli EC4439]
gi|424554478|ref|ZP_17996233.1| DNA polymerase IV [Escherichia coli EC4436]
gi|424560819|ref|ZP_18002134.1| DNA polymerase IV [Escherichia coli EC4437]
gi|424573032|ref|ZP_18013489.1| DNA polymerase IV [Escherichia coli EC1845]
gi|424579006|ref|ZP_18018968.1| DNA polymerase IV [Escherichia coli EC1863]
gi|425101766|ref|ZP_18504439.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|425129462|ref|ZP_18530590.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|425135804|ref|ZP_18536556.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|425148018|ref|ZP_18547942.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|425153634|ref|ZP_18553209.1| DNA polymerase IV [Escherichia coli PA34]
gi|425177683|ref|ZP_18575765.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|425190635|ref|ZP_18587789.1| DNA polymerase IV [Escherichia coli NE1487]
gi|425196965|ref|ZP_18593641.1| DNA polymerase IV [Escherichia coli NE037]
gi|425203633|ref|ZP_18599788.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|425240540|ref|ZP_18634204.1| DNA polymerase IV [Escherichia coli MA6]
gi|425246629|ref|ZP_18639859.1| DNA polymerase IV [Escherichia coli 5905]
gi|425252425|ref|ZP_18645332.1| DNA polymerase IV [Escherichia coli CB7326]
gi|425258760|ref|ZP_18651153.1| DNA polymerase IV [Escherichia coli EC96038]
gi|425264871|ref|ZP_18656815.1| DNA polymerase IV [Escherichia coli 5412]
gi|425292256|ref|ZP_18682877.1| DNA polymerase IV [Escherichia coli PA38]
gi|425309039|ref|ZP_18698538.1| DNA polymerase IV [Escherichia coli EC1735]
gi|425314964|ref|ZP_18704069.1| DNA polymerase IV [Escherichia coli EC1736]
gi|425321040|ref|ZP_18709746.1| DNA polymerase IV [Escherichia coli EC1737]
gi|425327203|ref|ZP_18715460.1| DNA polymerase IV [Escherichia coli EC1846]
gi|425333388|ref|ZP_18721142.1| DNA polymerase IV [Escherichia coli EC1847]
gi|425339806|ref|ZP_18727076.1| DNA polymerase IV [Escherichia coli EC1848]
gi|425345687|ref|ZP_18732522.1| DNA polymerase IV [Escherichia coli EC1849]
gi|425351906|ref|ZP_18738314.1| DNA polymerase IV [Escherichia coli EC1850]
gi|425357891|ref|ZP_18743889.1| DNA polymerase IV [Escherichia coli EC1856]
gi|425364006|ref|ZP_18749590.1| DNA polymerase IV [Escherichia coli EC1862]
gi|425383234|ref|ZP_18767139.1| DNA polymerase IV [Escherichia coli EC1866]
gi|425389935|ref|ZP_18773418.1| DNA polymerase IV [Escherichia coli EC1868]
gi|425396053|ref|ZP_18779124.1| DNA polymerase IV [Escherichia coli EC1869]
gi|425402036|ref|ZP_18784665.1| DNA polymerase IV [Escherichia coli EC1870]
gi|428944644|ref|ZP_19017317.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|428963029|ref|ZP_19034235.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|428969083|ref|ZP_19039744.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|428999510|ref|ZP_19068046.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|429036460|ref|ZP_19101923.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|429053602|ref|ZP_19118113.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|429064690|ref|ZP_19128580.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|429071309|ref|ZP_19134672.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|444922499|ref|ZP_21242239.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444928781|ref|ZP_21247948.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444934174|ref|ZP_21253133.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444939759|ref|ZP_21258422.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444945335|ref|ZP_21263769.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444950870|ref|ZP_21269109.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444967403|ref|ZP_21284886.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444972907|ref|ZP_21290206.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444978424|ref|ZP_21295427.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444988975|ref|ZP_21305722.1| DNA polymerase IV [Escherichia coli PA19]
gi|444994301|ref|ZP_21310907.1| DNA polymerase IV [Escherichia coli PA13]
gi|444999826|ref|ZP_21316295.1| DNA polymerase IV [Escherichia coli PA2]
gi|445005267|ref|ZP_21321618.1| DNA polymerase IV [Escherichia coli PA47]
gi|445010457|ref|ZP_21326659.1| DNA polymerase IV [Escherichia coli PA48]
gi|445016218|ref|ZP_21332275.1| DNA polymerase IV [Escherichia coli PA8]
gi|445021692|ref|ZP_21337621.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|445032409|ref|ZP_21348042.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|445038106|ref|ZP_21353584.1| DNA polymerase IV [Escherichia coli PA35]
gi|445043278|ref|ZP_21358622.1| DNA polymerase IV [Escherichia coli 3.4880]
gi|452971414|ref|ZP_21969641.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4009]
gi|187768454|gb|EDU32298.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4196]
gi|188015590|gb|EDU53712.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4113]
gi|188999602|gb|EDU68588.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4076]
gi|189355747|gb|EDU74166.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4401]
gi|189361061|gb|EDU79480.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4486]
gi|189370777|gb|EDU89193.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC869]
gi|189377361|gb|EDU95777.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC508]
gi|208727262|gb|EDZ76863.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4206]
gi|208733879|gb|EDZ82566.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4045]
gi|208740150|gb|EDZ87832.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4042]
gi|209161367|gb|ACI38800.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4115]
gi|209745364|gb|ACI70989.1| damage-inducible protein DinP [Escherichia coli]
gi|209745368|gb|ACI70991.1| damage-inducible protein DinP [Escherichia coli]
gi|209745370|gb|ACI70992.1| damage-inducible protein DinP [Escherichia coli]
gi|209745372|gb|ACI70993.1| damage-inducible protein DinP [Escherichia coli]
gi|254590791|gb|ACT70152.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14359]
gi|290760948|gb|ADD54909.1| DNA polymerase IV [Escherichia coli O55:H7 str. CB9615]
gi|320190215|gb|EFW64865.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC1212]
gi|320638166|gb|EFX07915.1| DNA polymerase IV [Escherichia coli O157:H7 str. G5101]
gi|320643248|gb|EFX12447.1| DNA polymerase IV [Escherichia coli O157:H- str. 493-89]
gi|320648895|gb|EFX17513.1| DNA polymerase IV [Escherichia coli O157:H- str. H 2687]
gi|320654675|gb|EFX22676.1| DNA polymerase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320660243|gb|EFX27753.1| DNA polymerase IV [Escherichia coli O55:H7 str. USDA 5905]
gi|320665009|gb|EFX32119.1| DNA polymerase IV [Escherichia coli O157:H7 str. LSU-61]
gi|326342451|gb|EGD66231.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1125]
gi|374357177|gb|AEZ38884.1| DNA polymerase IV [Escherichia coli O55:H7 str. RM12579]
gi|377921136|gb|EHU85143.1| impB/mucB/samB family protein [Escherichia coli DEC3E]
gi|377932632|gb|EHU96481.1| impB/mucB/samB family protein [Escherichia coli DEC3F]
gi|377934635|gb|EHU98462.1| impB/mucB/samB family protein [Escherichia coli DEC4A]
gi|377940705|gb|EHV04453.1| impB/mucB/samB family protein [Escherichia coli DEC4B]
gi|377950794|gb|EHV14417.1| impB/mucB/samB family protein [Escherichia coli DEC4C]
gi|377951760|gb|EHV15374.1| impB/mucB/samB family protein [Escherichia coli DEC4D]
gi|377955900|gb|EHV19453.1| impB/mucB/samB family protein [Escherichia coli DEC4E]
gi|377965870|gb|EHV29283.1| impB/mucB/samB family protein [Escherichia coli DEC5A]
gi|377973921|gb|EHV37251.1| impB/mucB/samB family protein [Escherichia coli DEC5B]
gi|377982138|gb|EHV45391.1| impB/mucB/samB family protein [Escherichia coli DEC5D]
gi|377983088|gb|EHV46335.1| impB/mucB/samB family protein [Escherichia coli DEC5C]
gi|390651325|gb|EIN29627.1| DNA polymerase IV [Escherichia coli FRIK1996]
gi|390653842|gb|EIN31944.1| DNA polymerase IV [Escherichia coli FDA517]
gi|390675300|gb|EIN51453.1| DNA polymerase IV [Escherichia coli FRIK1985]
gi|390689438|gb|EIN64390.1| DNA polymerase IV [Escherichia coli PA3]
gi|390709080|gb|EIN82213.1| DNA polymerase IV [Escherichia coli PA10]
gi|390720703|gb|EIN93411.1| DNA polymerase IV [Escherichia coli PA22]
gi|390734529|gb|EIO06046.1| DNA polymerase IV [Escherichia coli PA25]
gi|390737811|gb|EIO09068.1| DNA polymerase IV [Escherichia coli PA28]
gi|390762811|gb|EIO32066.1| DNA polymerase IV [Escherichia coli PA40]
gi|390777003|gb|EIO44879.1| DNA polymerase IV [Escherichia coli PA41]
gi|390785709|gb|EIO53251.1| DNA polymerase IV [Escherichia coli TW06591]
gi|390786878|gb|EIO54379.1| DNA polymerase IV [Escherichia coli PA39]
gi|390794948|gb|EIO62233.1| DNA polymerase IV [Escherichia coli TW10246]
gi|390802420|gb|EIO69457.1| DNA polymerase IV [Escherichia coli TW11039]
gi|390810887|gb|EIO77615.1| DNA polymerase IV [Escherichia coli TW07945]
gi|390811777|gb|EIO78462.1| DNA polymerase IV [Escherichia coli TW09109]
gi|390819763|gb|EIO86092.1| DNA polymerase IV [Escherichia coli TW10119]
gi|390824204|gb|EIO90207.1| DNA polymerase IV [Escherichia coli TW09098]
gi|390837680|gb|EIP02049.1| DNA polymerase IV [Escherichia coli EC4203]
gi|390840820|gb|EIP04819.1| DNA polymerase IV [Escherichia coli EC4196]
gi|390844539|gb|EIP08267.1| DNA polymerase IV [Escherichia coli TW09195]
gi|390856286|gb|EIP18904.1| DNA polymerase IV [Escherichia coli TW14301]
gi|390861790|gb|EIP24020.1| DNA polymerase IV [Escherichia coli TW14313]
gi|390886893|gb|EIP46938.1| DNA polymerase IV [Escherichia coli EC4402]
gi|390888618|gb|EIP48453.1| DNA polymerase IV [Escherichia coli EC4439]
gi|390895823|gb|EIP55251.1| DNA polymerase IV [Escherichia coli EC4436]
gi|390903876|gb|EIP62892.1| DNA polymerase IV [Escherichia coli EC1738]
gi|390911796|gb|EIP70485.1| DNA polymerase IV [Escherichia coli EC4437]
gi|390912249|gb|EIP70913.1| DNA polymerase IV [Escherichia coli EC1734]
gi|390925373|gb|EIP83075.1| DNA polymerase IV [Escherichia coli EC1863]
gi|390926499|gb|EIP84073.1| DNA polymerase IV [Escherichia coli EC1845]
gi|408077148|gb|EKH11361.1| DNA polymerase IV [Escherichia coli FRIK920]
gi|408086778|gb|EKH20281.1| DNA polymerase IV [Escherichia coli PA34]
gi|408110766|gb|EKH42546.1| DNA polymerase IV [Escherichia coli FRIK1999]
gi|408122641|gb|EKH53466.1| DNA polymerase IV [Escherichia coli NE1487]
gi|408130775|gb|EKH60868.1| DNA polymerase IV [Escherichia coli NE037]
gi|408132747|gb|EKH62691.1| DNA polymerase IV [Escherichia coli FRIK2001]
gi|408173384|gb|EKI00408.1| DNA polymerase IV [Escherichia coli MA6]
gi|408175304|gb|EKI02236.1| DNA polymerase IV [Escherichia coli 5905]
gi|408187695|gb|EKI13623.1| DNA polymerase IV [Escherichia coli CB7326]
gi|408193072|gb|EKI18626.1| DNA polymerase IV [Escherichia coli 5412]
gi|408193438|gb|EKI18974.1| DNA polymerase IV [Escherichia coli EC96038]
gi|408233796|gb|EKI56870.1| DNA polymerase IV [Escherichia coli PA38]
gi|408240406|gb|EKI63097.1| DNA polymerase IV [Escherichia coli EC1735]
gi|408249932|gb|EKI71840.1| DNA polymerase IV [Escherichia coli EC1736]
gi|408254161|gb|EKI75706.1| DNA polymerase IV [Escherichia coli EC1737]
gi|408260604|gb|EKI81707.1| DNA polymerase IV [Escherichia coli EC1846]
gi|408269132|gb|EKI89419.1| DNA polymerase IV [Escherichia coli EC1847]
gi|408270855|gb|EKI91012.1| DNA polymerase IV [Escherichia coli EC1848]
gi|408279493|gb|EKI99099.1| DNA polymerase IV [Escherichia coli EC1849]
gi|408285961|gb|EKJ04932.1| DNA polymerase IV [Escherichia coli EC1850]
gi|408288793|gb|EKJ07595.1| DNA polymerase IV [Escherichia coli EC1856]
gi|408301411|gb|EKJ19032.1| DNA polymerase IV [Escherichia coli EC1862]
gi|408319081|gb|EKJ35252.1| DNA polymerase IV [Escherichia coli EC1868]
gi|408319154|gb|EKJ35314.1| DNA polymerase IV [Escherichia coli EC1866]
gi|408332099|gb|EKJ47189.1| DNA polymerase IV [Escherichia coli EC1869]
gi|408339326|gb|EKJ53933.1| DNA polymerase IV [Escherichia coli EC1870]
gi|408559634|gb|EKK35946.1| DNA polymerase IV [Escherichia coli 5.2239]
gi|408591388|gb|EKK65821.1| DNA polymerase IV [Escherichia coli 8.2524]
gi|408592913|gb|EKK67267.1| DNA polymerase IV [Escherichia coli 10.0833]
gi|408606135|gb|EKK79602.1| DNA polymerase IV [Escherichia coli 8.0416]
gi|408613102|gb|EKK86431.1| DNA polymerase IV [Escherichia coli 88.0221]
gi|427218324|gb|EKV87335.1| DNA polymerase IV [Escherichia coli 88.1467]
gi|427235148|gb|EKW02790.1| DNA polymerase IV [Escherichia coli 90.0039]
gi|427236794|gb|EKW04351.1| DNA polymerase IV [Escherichia coli 90.0091]
gi|427271555|gb|EKW36347.1| DNA polymerase IV [Escherichia coli 95.0183]
gi|427307312|gb|EKW69784.1| DNA polymerase IV [Escherichia coli 96.0932]
gi|427322322|gb|EKW83957.1| DNA polymerase IV [Escherichia coli 97.1742]
gi|427335050|gb|EKW96099.1| DNA polymerase IV [Escherichia coli 99.0678]
gi|427337139|gb|EKW98067.1| DNA polymerase IV [Escherichia coli 99.0672]
gi|444543247|gb|ELV22541.1| DNA polymerase IV [Escherichia coli 99.0814]
gi|444551408|gb|ELV29354.1| DNA polymerase IV [Escherichia coli 09BKT078844]
gi|444552473|gb|ELV30284.1| DNA polymerase IV [Escherichia coli 99.0815]
gi|444565710|gb|ELV42563.1| DNA polymerase IV [Escherichia coli 99.0839]
gi|444568003|gb|ELV44711.1| DNA polymerase IV [Escherichia coli 99.0816]
gi|444572460|gb|ELV48886.1| DNA polymerase IV [Escherichia coli 99.0848]
gi|444586723|gb|ELV62211.1| DNA polymerase IV [Escherichia coli 99.1793]
gi|444600565|gb|ELV75399.1| DNA polymerase IV [Escherichia coli ATCC 700728]
gi|444609608|gb|ELV84065.1| DNA polymerase IV [Escherichia coli 99.1805]
gi|444615865|gb|ELV90053.1| DNA polymerase IV [Escherichia coli PA13]
gi|444615968|gb|ELV90150.1| DNA polymerase IV [Escherichia coli PA19]
gi|444624303|gb|ELV98203.1| DNA polymerase IV [Escherichia coli PA2]
gi|444633494|gb|ELW07018.1| DNA polymerase IV [Escherichia coli PA48]
gi|444633639|gb|ELW07145.1| DNA polymerase IV [Escherichia coli PA47]
gi|444638363|gb|ELW11702.1| DNA polymerase IV [Escherichia coli PA8]
gi|444648478|gb|ELW21407.1| DNA polymerase IV [Escherichia coli 7.1982]
gi|444654681|gb|ELW27329.1| DNA polymerase IV [Escherichia coli 99.1762]
gi|444663608|gb|ELW35825.1| DNA polymerase IV [Escherichia coli PA35]
gi|444668209|gb|ELW40232.1| DNA polymerase IV [Escherichia coli 3.4880]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|26246277|ref|NP_752316.1| DNA polymerase IV [Escherichia coli CFT073]
gi|227884751|ref|ZP_04002556.1| DNA polymerase IV [Escherichia coli 83972]
gi|300977370|ref|ZP_07173861.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|301045874|ref|ZP_07193061.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|331656311|ref|ZP_08357273.1| DNA polymerase IV [Escherichia coli TA206]
gi|331681650|ref|ZP_08382283.1| DNA polymerase IV [Escherichia coli H299]
gi|386627857|ref|YP_006147577.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|386632777|ref|YP_006152496.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386637671|ref|YP_006104469.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|417144149|ref|ZP_11985955.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|422362112|ref|ZP_16442686.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|422367371|ref|ZP_16447820.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|432410336|ref|ZP_19653019.1| DNA polymerase IV [Escherichia coli KTE39]
gi|432434908|ref|ZP_19677310.1| DNA polymerase IV [Escherichia coli KTE188]
gi|432455211|ref|ZP_19697415.1| DNA polymerase IV [Escherichia coli KTE201]
gi|432494133|ref|ZP_19735952.1| DNA polymerase IV [Escherichia coli KTE214]
gi|432502994|ref|ZP_19744732.1| DNA polymerase IV [Escherichia coli KTE220]
gi|432522416|ref|ZP_19759556.1| DNA polymerase IV [Escherichia coli KTE230]
gi|432567127|ref|ZP_19803654.1| DNA polymerase IV [Escherichia coli KTE53]
gi|432591390|ref|ZP_19827719.1| DNA polymerase IV [Escherichia coli KTE60]
gi|432606171|ref|ZP_19842368.1| DNA polymerase IV [Escherichia coli KTE67]
gi|432615051|ref|ZP_19851186.1| DNA polymerase IV [Escherichia coli KTE75]
gi|432649814|ref|ZP_19885577.1| DNA polymerase IV [Escherichia coli KTE87]
gi|432782195|ref|ZP_20016381.1| DNA polymerase IV [Escherichia coli KTE63]
gi|432897074|ref|ZP_20108070.1| DNA polymerase IV [Escherichia coli KTE192]
gi|432977007|ref|ZP_20165833.1| DNA polymerase IV [Escherichia coli KTE209]
gi|432998500|ref|ZP_20187041.1| DNA polymerase IV [Escherichia coli KTE223]
gi|433027326|ref|ZP_20215203.1| DNA polymerase IV [Escherichia coli KTE109]
gi|433056568|ref|ZP_20243663.1| DNA polymerase IV [Escherichia coli KTE124]
gi|433085886|ref|ZP_20272293.1| DNA polymerase IV [Escherichia coli KTE137]
gi|433123831|ref|ZP_20309427.1| DNA polymerase IV [Escherichia coli KTE160]
gi|433137901|ref|ZP_20323191.1| DNA polymerase IV [Escherichia coli KTE167]
gi|433147740|ref|ZP_20332809.1| DNA polymerase IV [Escherichia coli KTE174]
gi|433211173|ref|ZP_20394792.1| DNA polymerase IV [Escherichia coli KTE99]
gi|442605942|ref|ZP_21020751.1| DNA polymerase IV [Escherichia coli Nissle 1917]
gi|29427651|sp|P59477.1|DPO4_ECOL6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|26106675|gb|AAN78860.1|AE016756_43 DNA polymerase IV [Escherichia coli CFT073]
gi|227838352|gb|EEJ48818.1| DNA polymerase IV [Escherichia coli 83972]
gi|300302124|gb|EFJ58509.1| DNA polymerase IV [Escherichia coli MS 185-1]
gi|300409895|gb|EFJ93433.1| DNA polymerase IV [Escherichia coli MS 45-1]
gi|307552163|gb|ADN44938.1| DNA polymerase IV [Escherichia coli ABU 83972]
gi|315295163|gb|EFU54498.1| DNA polymerase IV [Escherichia coli MS 153-1]
gi|315300865|gb|EFU60087.1| DNA polymerase IV [Escherichia coli MS 16-3]
gi|331054559|gb|EGI26568.1| DNA polymerase IV [Escherichia coli TA206]
gi|331080852|gb|EGI52017.1| DNA polymerase IV [Escherichia coli H299]
gi|355418756|gb|AER82953.1| DNA polymerase IV [Escherichia coli str. 'clone D i2']
gi|355423676|gb|AER87872.1| DNA polymerase IV [Escherichia coli str. 'clone D i14']
gi|386164032|gb|EIH25818.1| DNA polymerase IV [Escherichia coli 1.2264]
gi|430938272|gb|ELC58513.1| DNA polymerase IV [Escherichia coli KTE39]
gi|430967292|gb|ELC84647.1| DNA polymerase IV [Escherichia coli KTE188]
gi|430985634|gb|ELD02227.1| DNA polymerase IV [Escherichia coli KTE201]
gi|431028666|gb|ELD41708.1| DNA polymerase IV [Escherichia coli KTE214]
gi|431042411|gb|ELD52900.1| DNA polymerase IV [Escherichia coli KTE220]
gi|431055130|gb|ELD64693.1| DNA polymerase IV [Escherichia coli KTE230]
gi|431102960|gb|ELE07630.1| DNA polymerase IV [Escherichia coli KTE53]
gi|431132834|gb|ELE34832.1| DNA polymerase IV [Escherichia coli KTE60]
gi|431141797|gb|ELE43560.1| DNA polymerase IV [Escherichia coli KTE67]
gi|431157991|gb|ELE58612.1| DNA polymerase IV [Escherichia coli KTE75]
gi|431193643|gb|ELE92975.1| DNA polymerase IV [Escherichia coli KTE87]
gi|431331907|gb|ELG19150.1| DNA polymerase IV [Escherichia coli KTE63]
gi|431429884|gb|ELH11718.1| DNA polymerase IV [Escherichia coli KTE192]
gi|431483035|gb|ELH62735.1| DNA polymerase IV [Escherichia coli KTE209]
gi|431514879|gb|ELH92718.1| DNA polymerase IV [Escherichia coli KTE223]
gi|431546441|gb|ELI20838.1| DNA polymerase IV [Escherichia coli KTE109]
gi|431574801|gb|ELI47560.1| DNA polymerase IV [Escherichia coli KTE124]
gi|431610462|gb|ELI79754.1| DNA polymerase IV [Escherichia coli KTE137]
gi|431650663|gb|ELJ17979.1| DNA polymerase IV [Escherichia coli KTE160]
gi|431665368|gb|ELJ32087.1| DNA polymerase IV [Escherichia coli KTE167]
gi|431677496|gb|ELJ43572.1| DNA polymerase IV [Escherichia coli KTE174]
gi|431736312|gb|ELJ99642.1| DNA polymerase IV [Escherichia coli KTE99]
gi|441712967|emb|CCQ06728.1| DNA polymerase IV [Escherichia coli Nissle 1917]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|422764774|ref|ZP_16818501.1| impB/mucB/samB family protein [Escherichia coli E1520]
gi|323938777|gb|EGB35023.1| impB/mucB/samB family protein [Escherichia coli E1520]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPTEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|319952817|ref|YP_004164084.1| DNA polymerase iv [Cellulophaga algicola DSM 14237]
gi|319421477|gb|ADV48586.1| DNA polymerase IV [Cellulophaga algicola DSM 14237]
Length = 366
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 15/194 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E SAGI+ NK +AK+AS NKP Q TV V L+ L I+K + GK+
Sbjct: 134 RIFDELGLVASAGISINKFIAKVASDYNKPNGQKTVNPEEVIEFLEKLEIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
T +LG+ T DL + SE L E++G +G + +++ RG+ V+ +PKS G+
Sbjct: 193 TTEKMYKLGIFTGFDLKQKSEIFLTENFG-KSGGYYYHVVRGVHNSAVKPHRIPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F L + + L + EL RL K I TL + S F
Sbjct: 252 RTF--SENLSSEIFMLERLEHIATELERRLKKSTISGKTI--TLKIKYSDF--------- 298
Query: 182 KFPSKSCPLRYGTA 195
++S LRY A
Sbjct: 299 TLQTRSKTLRYYIA 312
>gi|429030285|ref|ZP_19096187.1| DNA polymerase IV [Escherichia coli 96.0939]
gi|427294596|gb|EKW57772.1| DNA polymerase IV [Escherichia coli 96.0939]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568895|gb|AAL91959.1|AF483096_1 DNA polymerase DinB [Escherichia coli]
gi|19568897|gb|AAL91960.1|AF483097_1 DNA polymerase DinB [Escherichia coli]
gi|19568899|gb|AAL91961.1|AF483098_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|82775832|ref|YP_402179.1| DNA polymerase IV [Shigella dysenteriae Sd197]
gi|309786021|ref|ZP_07680650.1| DNA polymerase IV [Shigella dysenteriae 1617]
gi|123563306|sp|Q32J17.1|DPO4_SHIDS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|81239980|gb|ABB60690.1| damage-inducible protein P [Shigella dysenteriae Sd197]
gi|308926132|gb|EFP71610.1| DNA polymerase IV [Shigella dysenteriae 1617]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|350572217|ref|ZP_08940522.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
gi|349790473|gb|EGZ44382.1| DNA-directed DNA polymerase IV [Neisseria wadsworthii 9715]
Length = 383
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAG+A NK LAK+AS KP Q +P V L +LP +K+ +G
Sbjct: 161 EIFRQTGLTASAGVAPNKFLAKIASDWRKPNGQFVLPPEKVAEFLHTLPPEKIPGVGKVT 220
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+Q+ LG+ TVGDLL+F +L +G G L+ +ARGI V+
Sbjct: 221 RLKMQS-LGIDTVGDLLRFERGELANLFG-KWGYRLYELARGIDNRAVK 267
>gi|300991266|ref|ZP_07179526.1| DNA polymerase IV, partial [Escherichia coli MS 200-1]
gi|300305583|gb|EFJ60103.1| DNA polymerase IV [Escherichia coli MS 200-1]
Length = 320
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 99 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 157
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 158 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 216
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 217 TM--------AEDIHHWSE--CEAIIERLYPELERR 242
>gi|421733502|ref|ZP_16172606.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
gi|407078538|gb|EKE51340.1| DNA polymerase IV [Bifidobacterium bifidum LMG 13195]
Length = 430
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 EVASRSHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L+ ARG+ G EV KS S
Sbjct: 207 ERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGMDGREVTPYTPEKSISS 265
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 266 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|255100011|ref|ZP_05328988.1| DNA polymerase IV [Clostridium difficile QCD-63q42]
gi|255305898|ref|ZP_05350070.1| DNA polymerase IV [Clostridium difficile ATCC 43255]
gi|423090257|ref|ZP_17078565.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
gi|357556932|gb|EHJ38503.1| putative DNA polymerase IV [Clostridium difficile 70-100-2010]
Length = 365
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 133 IFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 193 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 251 TLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|352516889|ref|YP_004886206.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
gi|348600996|dbj|BAK94042.1| DNA polymerase IV [Tetragenococcus halophilus NBRC 12172]
Length = 378
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 148 IWQEVHLTCSAGVSYNKFLAKLASDYQKPRGLTVVTPDEAVEFLRDLPIEKFHGVGKKTV 207
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + SE +L + +G G L+ RGI VQ KS G +
Sbjct: 208 PKM-HELGIYTGNDLYQKSEMELIQIFG-KMGYSLYRKVRGIHNSPVQVTRERKSVGRER 265
Query: 123 SFPGPRALKTVASVQHWLNQL---CEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
++ K + S Q L+QL E+++E L + + K + L L S F++
Sbjct: 266 TYG-----KALTSEQECLSQLRIMAEQVTESLKKEQKHGKTVV--LKLRYSDFET 313
>gi|415843600|ref|ZP_11523476.1| DNA polymerase IV [Shigella sonnei 53G]
gi|425113565|ref|ZP_18515409.1| DNA polymerase IV [Escherichia coli 8.0566]
gi|323169562|gb|EFZ55234.1| DNA polymerase IV [Shigella sonnei 53G]
gi|408573520|gb|EKK49356.1| DNA polymerase IV [Escherichia coli 8.0566]
Length = 312
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 91 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 149
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 150 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 208
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 209 TM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|239638048|ref|ZP_04679007.1| DNA polymerase IV [Staphylococcus warneri L37603]
gi|239596331|gb|EEQ78869.1| DNA polymerase IV [Staphylococcus warneri L37603]
Length = 356
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++TE T SAG+++NK LAKLASGMNKP T + +++V +L L I + + GK
Sbjct: 132 ILEQTELTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHDILMGLDIGEFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ + DL E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 EKVMHDNQIFNGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKSTRIRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|198283550|ref|YP_002219871.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198248071|gb|ACH83664.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 374
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+++NK+LAKLAS KP +P L LP+ K+ +G
Sbjct: 140 RIHRETRLTASAGVSYNKLLAKLASDWRKPQGLFVIPPKRGLDFLAPLPVGKLHGVGPAT 199
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + +G+ TV DL ++++L +G G W + +ARGI VQ KS G+
Sbjct: 200 VKKL-SAMGIDTVSDLRAMAQERLIRCFG-KAGAWFYEVARGIDRRPVQPTRQRKSVGTE 257
Query: 122 KSF 124
++F
Sbjct: 258 RTF 260
>gi|157159715|ref|YP_001457033.1| DNA polymerase IV [Escherichia coli HS]
gi|193068712|ref|ZP_03049673.1| DNA polymerase IV [Escherichia coli E110019]
gi|293413508|ref|ZP_06656157.1| DNA polymerase IV [Escherichia coli B185]
gi|293418349|ref|ZP_06660784.1| DNA polymerase IV [Escherichia coli B088]
gi|300817250|ref|ZP_07097468.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|300919512|ref|ZP_07136010.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|307313500|ref|ZP_07593121.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|309797859|ref|ZP_07692241.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|331651165|ref|ZP_08352190.1| DNA polymerase IV [Escherichia coli M718]
gi|378714319|ref|YP_005279212.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|386607643|ref|YP_006123129.1| DNA polymerase IV [Escherichia coli W]
gi|386702925|ref|YP_006166762.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|386708073|ref|YP_006171794.1| DNA polymerase IV [Escherichia coli W]
gi|415832818|ref|ZP_11518094.1| DNA polymerase IV [Escherichia coli OK1357]
gi|415879827|ref|ZP_11544933.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|417152597|ref|ZP_11991388.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|417223813|ref|ZP_12027104.1| DNA polymerase IV [Escherichia coli 96.154]
gi|417229975|ref|ZP_12031561.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|417579476|ref|ZP_12230299.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|417600528|ref|ZP_12251113.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|417665320|ref|ZP_12314888.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|419343913|ref|ZP_13885297.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|419348344|ref|ZP_13889697.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|419353246|ref|ZP_13894532.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|419358592|ref|ZP_13899823.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|419363726|ref|ZP_13904908.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|422352008|ref|ZP_16432809.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|432479586|ref|ZP_19721551.1| DNA polymerase IV [Escherichia coli KTE210]
gi|432532438|ref|ZP_19769444.1| DNA polymerase IV [Escherichia coli KTE234]
gi|432677848|ref|ZP_19913277.1| DNA polymerase IV [Escherichia coli KTE142]
gi|432804333|ref|ZP_20038279.1| DNA polymerase IV [Escherichia coli KTE91]
gi|432932589|ref|ZP_20132443.1| DNA polymerase IV [Escherichia coli KTE184]
gi|433090597|ref|ZP_20276906.1| DNA polymerase IV [Escherichia coli KTE138]
gi|433192067|ref|ZP_20376097.1| DNA polymerase IV [Escherichia coli KTE90]
gi|450185316|ref|ZP_21889033.1| DNA polymerase IV [Escherichia coli SEPT362]
gi|189027663|sp|A7ZWJ6.1|DPO4_ECOHS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|157065395|gb|ABV04650.1| DNA polymerase IV [Escherichia coli HS]
gi|192958075|gb|EDV88517.1| DNA polymerase IV [Escherichia coli E110019]
gi|291324877|gb|EFE64292.1| DNA polymerase IV [Escherichia coli B088]
gi|291433566|gb|EFF06539.1| DNA polymerase IV [Escherichia coli B185]
gi|300413406|gb|EFJ96716.1| DNA polymerase IV [Escherichia coli MS 115-1]
gi|300530226|gb|EFK51288.1| DNA polymerase IV [Escherichia coli MS 107-1]
gi|306906668|gb|EFN37179.1| DNA-directed DNA polymerase [Escherichia coli W]
gi|308118543|gb|EFO55805.1| DNA polymerase IV [Escherichia coli MS 145-7]
gi|315059560|gb|ADT73887.1| DNA polymerase IV [Escherichia coli W]
gi|323181566|gb|EFZ66986.1| DNA polymerase IV [Escherichia coli OK1357]
gi|323379880|gb|ADX52148.1| DNA-directed DNA polymerase [Escherichia coli KO11FL]
gi|324019872|gb|EGB89091.1| DNA polymerase IV [Escherichia coli MS 117-3]
gi|331050906|gb|EGI22958.1| DNA polymerase IV [Escherichia coli M718]
gi|342926640|gb|EGU95362.1| DNA polymerase IV [Escherichia coli MS 79-10]
gi|345344343|gb|EGW76716.1| DNA polymerase IV [Escherichia coli STEC_B2F1]
gi|345353873|gb|EGW86100.1| DNA polymerase IV [Escherichia coli STEC_94C]
gi|378190412|gb|EHX50996.1| impB/mucB/samB family protein [Escherichia coli DEC13A]
gi|378204006|gb|EHX64422.1| impB/mucB/samB family protein [Escherichia coli DEC13B]
gi|378208157|gb|EHX68541.1| impB/mucB/samB family protein [Escherichia coli DEC13D]
gi|378209163|gb|EHX69537.1| impB/mucB/samB family protein [Escherichia coli DEC13C]
gi|378219746|gb|EHX80013.1| impB/mucB/samB family protein [Escherichia coli DEC13E]
gi|383394452|gb|AFH19410.1| DNA polymerase IV [Escherichia coli KO11FL]
gi|383403765|gb|AFH10008.1| DNA polymerase IV [Escherichia coli W]
gi|386169321|gb|EIH35829.1| DNA polymerase IV [Escherichia coli 96.0497]
gi|386198861|gb|EIH97852.1| DNA polymerase IV [Escherichia coli 96.154]
gi|386206465|gb|EII10971.1| DNA polymerase IV [Escherichia coli 5.0959]
gi|397787111|gb|EJK97941.1| DNA polymerase IV [Escherichia coli STEC_O31]
gi|431010603|gb|ELD24947.1| DNA polymerase IV [Escherichia coli KTE210]
gi|431064614|gb|ELD73479.1| DNA polymerase IV [Escherichia coli KTE234]
gi|431207759|gb|ELF06005.1| DNA polymerase IV [Escherichia coli KTE142]
gi|431357666|gb|ELG44332.1| DNA polymerase IV [Escherichia coli KTE91]
gi|431456622|gb|ELH36965.1| DNA polymerase IV [Escherichia coli KTE184]
gi|431615609|gb|ELI84735.1| DNA polymerase IV [Escherichia coli KTE138]
gi|431722666|gb|ELJ86631.1| DNA polymerase IV [Escherichia coli KTE90]
gi|449325289|gb|EMD15201.1| DNA polymerase IV [Escherichia coli SEPT362]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419923466|ref|ZP_14441411.1| DNA polymerase IV [Escherichia coli 541-15]
gi|388393729|gb|EIL55084.1| DNA polymerase IV [Escherichia coli 541-15]
Length = 351
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGMRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|337280537|ref|YP_004620009.1| DNA polymerase IV [Ramlibacter tataouinensis TTB310]
gi|334731614|gb|AEG93990.1| Candidate DNA polymerase IV [Ramlibacter tataouinensis TTB310]
Length = 409
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T TCS G+A NK++AK+AS NKP + V V+ L+ LP++K+ +G K
Sbjct: 164 IFERTALTCSIGVAPNKLIAKMASEFNKPNGISVVHGEDVQRLIWPLPVRKINGIGPKAE 223
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L + LG+T +GD+ + L +G + G WL + A G V P S
Sbjct: 224 AKL-HRLGLTAIGDIAAREREWLVGHFGKSNGAWLHDAAWGRDDRPVVTESEPVSMSRET 282
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L V + L + +L ER+ DL++ + T+ +
Sbjct: 283 TF--ERDLHAVRD-RAELGAIFTDLCERVAGDLQRKGYVGRTIGI 324
>gi|417688076|ref|ZP_12337325.1| DNA polymerase IV [Shigella boydii 5216-82]
gi|332094996|gb|EGJ00035.1| DNA polymerase IV [Shigella boydii 5216-82]
Length = 345
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|452820346|gb|EME27389.1| DNA polymerase iota subunit [Galdieria sulphuraria]
Length = 525
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 3/144 (2%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+ TCS G++++K+L+KLA+ ++KP +QT + V+ L +L ++K+ +G SL +
Sbjct: 181 QLTCSGGLSNSKLLSKLAASIHKPDEQTVILPQCVESYLSNLNLRKLPGIGSATYQSLVD 240
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
V+T L ++L E +G G L+NI RGI E V L KS + F
Sbjct: 241 HFLVSTCEQLRCIPVERLVEVFGSRLGIRLFNICRGIDEESVHDTSLVKSISCEERFSKT 300
Query: 128 RALKTVASVQHWLNQLCEELSERL 151
+ + V+ +L + E L +RL
Sbjct: 301 ---ERWSEVERYLGIVVERLLDRL 321
>gi|126698476|ref|YP_001087373.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
gi|123174445|sp|Q18A91.1|DPO4_CLOD6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|115249913|emb|CAJ67732.1| DNA polymerase IV (Pol IV) [Clostridium difficile 630]
Length = 365
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 133 IFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 193 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 251 TLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>gi|418069525|ref|ZP_12706802.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
gi|357536056|gb|EHJ20087.1| DNA polymerase IV [Pediococcus acidilactici MA18/5M]
Length = 374
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 7/210 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ TCS GI++NK LAK+AS KP + V L +PI++ + +G K
Sbjct: 145 RIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPIEQFRGVGKKT 204
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +ELGV DLLK SE+ L +G G L+ RG V + KS G
Sbjct: 205 IPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAYQRERKSIGKE 262
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSR 180
+++ P L T V L+ + ++L++ + + K + L L S F++ + +R
Sbjct: 263 ETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSDFETLTKRITR 318
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 210
+F Y AK D F G+R
Sbjct: 319 PEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|416286267|ref|ZP_11648245.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|420345344|ref|ZP_14846777.1| DNA polymerase IV [Shigella boydii 965-58]
gi|320178933|gb|EFW53895.1| DNA polymerase IV [Shigella boydii ATCC 9905]
gi|391276627|gb|EIQ35396.1| DNA polymerase IV [Shigella boydii 965-58]
Length = 350
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 129 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 187
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 188 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 246
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 247 TM--------AEDIHHWSE--CEAIIERLYPELERR 272
>gi|417621489|ref|ZP_12271819.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|419373694|ref|ZP_13914754.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
gi|345386937|gb|EGX16769.1| DNA polymerase IV [Escherichia coli STEC_H.1.8]
gi|378227113|gb|EHX87289.1| impB/mucB/samB family protein [Escherichia coli DEC14B]
Length = 312
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 91 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 149
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 150 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 208
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 209 TM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|270290971|ref|ZP_06197194.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
gi|270280367|gb|EFA26202.1| DNA polymerase IV [Pediococcus acidilactici 7_4]
Length = 374
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 7/210 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ TCS GI++NK LAK+AS KP + V L +PI++ + +G K
Sbjct: 145 RIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPIEQFRGVGKKT 204
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +ELGV DLLK SE+ L +G G L+ RG V + KS G
Sbjct: 205 IPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAYQRERKSIGKE 262
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSR 180
+++ P L T V L+ + ++L++ + + K + L L S F++ + +R
Sbjct: 263 ETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSDFETLTKRITR 318
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 210
+F Y AK D F G+R
Sbjct: 319 PEFLPTDSETYYFYAKQIFDEIADFSRGIR 348
>gi|418324714|ref|ZP_12935944.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
gi|365224987|gb|EHM66242.1| DNA polymerase IV [Staphylococcus pettenkoferi VCU012]
Length = 356
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 90/171 (52%), Gaps = 8/171 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ T SAG+++NK LAKLASGMNKP T + +++V +L +L I + +G
Sbjct: 132 IYEQTQLTASAGVSYNKFLAKLASGMNKPNNLTVIDYNNVHEILMNLNIGGFRGVGPTTE 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G+ T DL SE +L +G G L+N ARGI V++ + KS G+ +
Sbjct: 192 EKMHAN-GIYTGKDLYDKSERELIRLFG-KKGHGLYNKARGIDESPVKSERIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
+F + + LN++ ELS + L + ++ T+T+ ++
Sbjct: 250 TFA-----TDMNDDEQVLNKIW-ELSTKTAERLSRIQKSGKTVTVKIKTYR 294
>gi|357237453|ref|ZP_09124794.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
gi|356753643|gb|EHI70746.1| DNA polymerase IV [Streptococcus ictaluri 707-05]
Length = 365
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KE TCSAG+++NK LAKLAS KP T + L LPI K +G K
Sbjct: 143 IWKEVGLTCSAGVSYNKFLAKLASDYQKPHGLTLILPEDALTFLKELPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ E+G+ T DLL E L + +G G L+ ARGIS V+A + KS GS +
Sbjct: 203 IKLE-EMGIFTGADLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKANRIRKSIGSER 260
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++ + L V+ +++ LSE L S N++ TL L
Sbjct: 261 TY--GKLLYEEKDVKAEISKNASRLSELLKS----NQKSGKTLVL 299
>gi|304385242|ref|ZP_07367587.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
gi|304328449|gb|EFL95670.1| DNA-directed DNA polymerase IV [Pediococcus acidilactici DSM 20284]
Length = 377
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 7/210 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ TCS GI++NK LAK+AS KP + V L +PI++ + +G K
Sbjct: 148 RIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPIEQFRGVGKKT 207
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +ELGV DLLK SE+ L +G G L+ RG V + KS G
Sbjct: 208 IPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAYQRERKSIGKE 265
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSR 180
+++ P L T V L+ + ++L++ + + K + L L S F++ + +R
Sbjct: 266 ETYGKP--LVTENEVDQRLHLIAKKLAQAVTKRQKHGKTL--VLKLRYSDFETLTKRITR 321
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 210
+F Y AK D F G+R
Sbjct: 322 PEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|209917444|ref|YP_002291528.1| DNA polymerase IV [Escherichia coli SE11]
gi|209910703|dbj|BAG75777.1| DNA polymerase IV [Escherichia coli SE11]
Length = 351
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|419862901|ref|ZP_14385473.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
gi|388343966|gb|EIL09864.1| DNA polymerase IV [Escherichia coli O103:H25 str. CVM9340]
Length = 351
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|20806775|ref|NP_621946.1| DNA polymerase IV [Thermoanaerobacter tengcongensis MB4]
gi|254478433|ref|ZP_05091810.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
gi|22095608|sp|P58965.1|DPO4_THETN RecName: Full=DNA polymerase IV; Short=Pol IV
gi|20515235|gb|AAM23550.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Thermoanaerobacter tengcongensis MB4]
gi|214035604|gb|EEB76301.1| ImpB/MucB/SamB family protein [Carboxydibrachium pacificum DSM
12653]
Length = 384
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T T S GI++NK LAKLAS NKP + V +L LP+ K+ +G K L+
Sbjct: 131 TGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKVHGIGEKSAEKLR 190
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ +G+ TV DLLK ++ L E +G TG ++N RGI V+ KS G K+
Sbjct: 191 S-IGIETVEDLLKLPQENLIELFG-KTGVEIYNRIRGIDERPVETMREIKSIGKEKT--- 245
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
L+ + L Q +E SE + +L + + T+T+ K++D K +
Sbjct: 246 ---LEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVK---IKTADFAVHTKSKTV 299
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALSVSASKIVPV 243
+R+ ED + + + L E+ V+ G S+ S + LS ++V V
Sbjct: 300 DKYIRFS-----EDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYEQLSFLDKRLVKV 354
Query: 244 LSG 246
+
Sbjct: 355 IKA 357
>gi|19568891|gb|AAL91957.1|AF483094_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|190572635|ref|YP_001970480.1| DNA polymerase IV [Stenotrophomonas maltophilia K279a]
gi|226738242|sp|B2FLR2.1|DPO4_STRMK RecName: Full=DNA polymerase IV; Short=Pol IV
gi|190010557|emb|CAQ44166.1| putative DNA-damage-inducible protein p [Stenotrophomonas
maltophilia K279a]
Length = 364
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+ + + + +RI HT+ L
Sbjct: 249 DTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|312373688|gb|EFR21387.1| hypothetical protein AND_17124 [Anopheles darlingi]
Length = 568
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 100 IARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 159
+ARGI E V A+ KS G K FPG A+ +A++QHWLN+L E+ ERL D ++N
Sbjct: 1 MARGIDLEAVTAKFHSKSIGCCKRFPGKNAITGLATLQHWLNELATEIVERLEKDFDENN 60
Query: 160 RIAHTLTL-HASAFKSSDSDSRKKFPSKSCPLR-YGTAKIQEDTFNLFQAGLREFLGSFG 217
R A +T+ ++ F SD S ++S PL Y T +I D + F +
Sbjct: 61 RTAKQMTVSYSQQFGDSDVAS-----TRSVPLVLYETERIASDALEAIKRNTERFFKAGS 115
Query: 218 VKTQGSHYSGWRITALSVSASKIVP 242
T H + I L +SA K P
Sbjct: 116 --TTALHNA---IKFLGISAGKFEP 135
>gi|425141743|ref|ZP_18542062.1| DNA polymerase IV [Escherichia coli 10.0869]
gi|408605090|gb|EKK78624.1| DNA polymerase IV [Escherichia coli 10.0869]
Length = 312
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 91 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 149
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 150 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 208
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 209 TM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|55821632|ref|YP_140074.1| DNA polymerase IV [Streptococcus thermophilus LMG 18311]
gi|81560203|sp|Q5M2Y5.1|DPO4_STRT2 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|55737617|gb|AAV61259.1| DNA polymerase IV, damage-inducible [Streptococcus thermophilus LMG
18311]
Length = 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|386087258|ref|YP_006003132.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|386345357|ref|YP_006041521.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387910359|ref|YP_006340665.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
gi|312278971|gb|ADQ63628.1| DNA polymerase IV [Streptococcus thermophilus ND03]
gi|339278818|emb|CCC20566.1| hypothetical protein STH8232_1907 [Streptococcus thermophilus JIM
8232]
gi|387575294|gb|AFJ84000.1| DNA polymerase IV [Streptococcus thermophilus MN-ZLW-002]
Length = 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|86143650|ref|ZP_01062026.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
gi|85829693|gb|EAQ48155.1| DNA polymerase IV [Leeuwenhoekiella blandensis MED217]
Length = 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T SAGI+ NK +AK+AS +NKP Q TV V L++L I+K + GK+
Sbjct: 134 KIKEKTGLNASAGISINKFIAKVASDVNKPNGQKTVNPEEVLPFLEALDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL S + LQE +G +G +N+ RGI EV+ + KS G+
Sbjct: 193 TAEKMYQLGIFTGNDLKSKSLEFLQEKFG-KSGNHYYNVVRGIHLSEVKPHRIRKSLGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F + ++S L +L E ++E + L+++ T+TL K SD
Sbjct: 252 RTFS-----ENISSEIFMLERL-ENIAEEIERRLKKSNVAGKTVTL-----KIKYSDFTL 300
Query: 182 KFPSKSCP 189
K SK+ P
Sbjct: 301 KTRSKTLP 308
>gi|423081977|ref|ZP_17070572.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|423085581|ref|ZP_17074023.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
gi|357549227|gb|EHJ31074.1| putative DNA polymerase IV [Clostridium difficile 002-P50-2011]
gi|357549498|gb|EHJ31344.1| putative DNA polymerase IV [Clostridium difficile 050-P50-2011]
Length = 366
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 134 IFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 193
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 194 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 251
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 252 TLSHNLDIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 291
>gi|419706767|ref|ZP_14234277.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
gi|383283489|gb|EIC81443.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius PS4]
Length = 368
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSPVRPNRIRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|254974524|ref|ZP_05270996.1| DNA polymerase IV [Clostridium difficile QCD-66c26]
gi|255313647|ref|ZP_05355230.1| DNA polymerase IV [Clostridium difficile QCD-76w55]
gi|255516331|ref|ZP_05384007.1| DNA polymerase IV [Clostridium difficile QCD-97b34]
gi|255649431|ref|ZP_05396333.1| DNA polymerase IV [Clostridium difficile QCD-37x79]
gi|260682597|ref|YP_003213882.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260686197|ref|YP_003217330.1| DNA polymerase IV [Clostridium difficile R20291]
gi|306519510|ref|ZP_07405857.1| DNA polymerase IV [Clostridium difficile QCD-32g58]
gi|384360178|ref|YP_006198030.1| DNA polymerase IV [Clostridium difficile BI1]
gi|260208760|emb|CBA61621.1| DNA polymerase IV [Clostridium difficile CD196]
gi|260212213|emb|CBE02909.1| DNA polymerase IV [Clostridium difficile R20291]
Length = 365
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 133 IFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 193 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 251 TLSHNLDIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 290
>gi|301019119|ref|ZP_07183323.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331661627|ref|ZP_08362550.1| DNA polymerase IV [Escherichia coli TA143]
gi|419917055|ref|ZP_14435335.1| DNA polymerase IV [Escherichia coli KD2]
gi|422330511|ref|ZP_16411528.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|432390183|ref|ZP_19633048.1| DNA polymerase IV [Escherichia coli KTE21]
gi|432769059|ref|ZP_20003434.1| DNA polymerase IV [Escherichia coli KTE50]
gi|432791514|ref|ZP_20025608.1| DNA polymerase IV [Escherichia coli KTE78]
gi|432797481|ref|ZP_20031509.1| DNA polymerase IV [Escherichia coli KTE79]
gi|432959552|ref|ZP_20149930.1| DNA polymerase IV [Escherichia coli KTE202]
gi|433061471|ref|ZP_20248440.1| DNA polymerase IV [Escherichia coli KTE125]
gi|300399378|gb|EFJ82916.1| DNA polymerase IV [Escherichia coli MS 69-1]
gi|331060049|gb|EGI32013.1| DNA polymerase IV [Escherichia coli TA143]
gi|373248531|gb|EHP67959.1| DNA polymerase IV [Escherichia coli 4_1_47FAA]
gi|388394924|gb|EIL56165.1| DNA polymerase IV [Escherichia coli KD2]
gi|430922926|gb|ELC43664.1| DNA polymerase IV [Escherichia coli KTE21]
gi|431319354|gb|ELG07025.1| DNA polymerase IV [Escherichia coli KTE50]
gi|431342310|gb|ELG29289.1| DNA polymerase IV [Escherichia coli KTE78]
gi|431345701|gb|ELG32615.1| DNA polymerase IV [Escherichia coli KTE79]
gi|431479984|gb|ELH59715.1| DNA polymerase IV [Escherichia coli KTE202]
gi|431588521|gb|ELI59795.1| DNA polymerase IV [Escherichia coli KTE125]
Length = 351
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|86134767|ref|ZP_01053349.1| DNA polymerase IV [Polaribacter sp. MED152]
gi|85821630|gb|EAQ42777.1| DNA polymerase IV [Polaribacter sp. MED152]
Length = 360
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T SAGI+ NK +AK+AS +NKP Q T+ V L+ LP+ K +G
Sbjct: 134 KIYDKTGLRASAGISINKFIAKVASDINKPNGQKTIHPEEVIQFLEELPVNKFYGVGKVT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ N LG+ DL K S ++L + +G +G +NI RGI EV+ + KS G+
Sbjct: 194 AAKMYN-LGIFVGNDLKKRSLEELTQLFG-KSGLHYYNIVRGIHKSEVKPNRIRKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F + + + LN + +E+ +R+ + K I TL + S F
Sbjct: 252 RTF--RENISSEIYMLDKLNDIADEIEKRMHKSNTKGKTI--TLKIKYSDF 298
>gi|386617769|ref|YP_006137349.1| DNA polymerase IV [Escherichia coli NA114]
gi|387828289|ref|YP_003348226.1| DNA polymerase IV [Escherichia coli SE15]
gi|432396106|ref|ZP_19638898.1| DNA polymerase IV [Escherichia coli KTE25]
gi|432420390|ref|ZP_19662948.1| DNA polymerase IV [Escherichia coli KTE178]
gi|432498522|ref|ZP_19740302.1| DNA polymerase IV [Escherichia coli KTE216]
gi|432557297|ref|ZP_19793990.1| DNA polymerase IV [Escherichia coli KTE49]
gi|432693062|ref|ZP_19928277.1| DNA polymerase IV [Escherichia coli KTE162]
gi|432709111|ref|ZP_19944180.1| DNA polymerase IV [Escherichia coli KTE6]
gi|432721852|ref|ZP_19956780.1| DNA polymerase IV [Escherichia coli KTE17]
gi|432726347|ref|ZP_19961230.1| DNA polymerase IV [Escherichia coli KTE18]
gi|432740031|ref|ZP_19974753.1| DNA polymerase IV [Escherichia coli KTE23]
gi|432917226|ref|ZP_20121880.1| DNA polymerase IV [Escherichia coli KTE173]
gi|432924504|ref|ZP_20126791.1| DNA polymerase IV [Escherichia coli KTE175]
gi|432979781|ref|ZP_20168562.1| DNA polymerase IV [Escherichia coli KTE211]
gi|432989343|ref|ZP_20178013.1| DNA polymerase IV [Escherichia coli KTE217]
gi|433095136|ref|ZP_20281354.1| DNA polymerase IV [Escherichia coli KTE139]
gi|433104413|ref|ZP_20290436.1| DNA polymerase IV [Escherichia coli KTE148]
gi|433109432|ref|ZP_20295314.1| DNA polymerase IV [Escherichia coli KTE150]
gi|281177446|dbj|BAI53776.1| DNA polymerase IV [Escherichia coli SE15]
gi|333968270|gb|AEG35075.1| DNA polymerase IV [Escherichia coli NA114]
gi|430918488|gb|ELC39489.1| DNA polymerase IV [Escherichia coli KTE25]
gi|430947555|gb|ELC67252.1| DNA polymerase IV [Escherichia coli KTE178]
gi|431032116|gb|ELD44827.1| DNA polymerase IV [Escherichia coli KTE216]
gi|431094350|gb|ELD99981.1| DNA polymerase IV [Escherichia coli KTE49]
gi|431237204|gb|ELF32204.1| DNA polymerase IV [Escherichia coli KTE162]
gi|431252832|gb|ELF46346.1| DNA polymerase IV [Escherichia coli KTE6]
gi|431268597|gb|ELF60066.1| DNA polymerase IV [Escherichia coli KTE17]
gi|431276455|gb|ELF67475.1| DNA polymerase IV [Escherichia coli KTE18]
gi|431286160|gb|ELF76986.1| DNA polymerase IV [Escherichia coli KTE23]
gi|431447878|gb|ELH28598.1| DNA polymerase IV [Escherichia coli KTE173]
gi|431450145|gb|ELH30637.1| DNA polymerase IV [Escherichia coli KTE175]
gi|431496402|gb|ELH75985.1| DNA polymerase IV [Escherichia coli KTE211]
gi|431498588|gb|ELH77773.1| DNA polymerase IV [Escherichia coli KTE217]
gi|431620014|gb|ELI88902.1| DNA polymerase IV [Escherichia coli KTE139]
gi|431632438|gb|ELJ00726.1| DNA polymerase IV [Escherichia coli KTE150]
gi|431634437|gb|ELJ02678.1| DNA polymerase IV [Escherichia coli KTE148]
Length = 351
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|116628345|ref|YP_820964.1| DNA polymerase IV [Streptococcus thermophilus LMD-9]
gi|122267060|sp|Q03J54.1|DPO4_STRTD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|116101622|gb|ABJ66768.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Streptococcus thermophilus LMD-9]
Length = 367
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|456737807|gb|EMF62484.1| DNA polymerase IV [Stenotrophomonas maltophilia EPM1]
Length = 364
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+ + + + +RI HT+ L
Sbjct: 249 DTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|419699174|ref|ZP_14226796.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|422378507|ref|ZP_16458714.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|432731001|ref|ZP_19965840.1| DNA polymerase IV [Escherichia coli KTE45]
gi|432758061|ref|ZP_19992584.1| DNA polymerase IV [Escherichia coli KTE46]
gi|324010201|gb|EGB79420.1| DNA polymerase IV [Escherichia coli MS 57-2]
gi|380349696|gb|EIA37962.1| DNA polymerase IV [Escherichia coli SCI-07]
gi|431278405|gb|ELF69395.1| DNA polymerase IV [Escherichia coli KTE45]
gi|431311847|gb|ELF99994.1| DNA polymerase IV [Escherichia coli KTE46]
Length = 351
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERAVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|41057936|gb|AAR98925.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPVFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|300902538|ref|ZP_07120515.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|301302018|ref|ZP_07208151.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|415865924|ref|ZP_11538633.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|417168586|ref|ZP_12001037.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|417637524|ref|ZP_12287701.1| DNA polymerase IV [Escherichia coli TX1999]
gi|419168270|ref|ZP_13712668.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|419179263|ref|ZP_13722888.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|419186030|ref|ZP_13729551.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|419190061|ref|ZP_13733529.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|420383905|ref|ZP_14883294.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|427803303|ref|ZP_18970370.1| damage-inducible protein P [Escherichia coli chi7122]
gi|427807907|ref|ZP_18974972.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|432452995|ref|ZP_19695240.1| DNA polymerase IV [Escherichia coli KTE193]
gi|433031645|ref|ZP_20219465.1| DNA polymerase IV [Escherichia coli KTE112]
gi|433128532|ref|ZP_20314017.1| DNA polymerase IV [Escherichia coli KTE163]
gi|433133434|ref|ZP_20318817.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443616243|ref|YP_007380099.1| DNA polymerase IV [Escherichia coli APEC O78]
gi|300405351|gb|EFJ88889.1| DNA polymerase IV [Escherichia coli MS 84-1]
gi|300842570|gb|EFK70330.1| DNA polymerase IV [Escherichia coli MS 124-1]
gi|315253713|gb|EFU33681.1| DNA polymerase IV [Escherichia coli MS 85-1]
gi|345395654|gb|EGX25396.1| DNA polymerase IV [Escherichia coli TX1999]
gi|378018676|gb|EHV81522.1| DNA polymerase IV [Escherichia coli DEC7A]
gi|378027724|gb|EHV90349.1| impB/mucB/samB family protein [Escherichia coli DEC7C]
gi|378031454|gb|EHV94042.1| impB/mucB/samB family protein [Escherichia coli DEC7D]
gi|378042164|gb|EHW04613.1| DNA polymerase IV [Escherichia coli DEC7E]
gi|386170634|gb|EIH42687.1| DNA polymerase IV [Escherichia coli 99.0741]
gi|391309729|gb|EIQ67394.1| DNA polymerase IV [Escherichia coli EPECa12]
gi|412961485|emb|CCK45390.1| damage-inducible protein P [Escherichia coli chi7122]
gi|412968086|emb|CCJ42699.1| damage-inducible protein P; putative tRNA synthetase [Escherichia
coli]
gi|430974983|gb|ELC91888.1| DNA polymerase IV [Escherichia coli KTE193]
gi|431560897|gb|ELI34402.1| DNA polymerase IV [Escherichia coli KTE112]
gi|431652088|gb|ELJ19251.1| DNA polymerase IV [Escherichia coli KTE163]
gi|431663249|gb|ELJ30011.1| DNA polymerase IV [Escherichia coli KTE166]
gi|443420751|gb|AGC85655.1| DNA polymerase IV [Escherichia coli APEC O78]
Length = 351
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|188025344|ref|ZP_02958315.2| hypothetical protein PROSTU_00018 [Providencia stuartii ATCC 25827]
gi|188023887|gb|EDU61927.1| DNA polymerase IV [Providencia stuartii ATCC 25827]
Length = 359
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK+ +G
Sbjct: 137 QIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKKIPGVGKVT 196
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + +G+ T GD+ + L + G G LW GI V L KS G
Sbjct: 197 AQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDRLRKSVGVE 254
Query: 122 KSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 162
++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 255 RTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 292
>gi|41057942|gb|AAR98928.1| SOS inducible DNA polymerase, partial [Escherichia coli]
Length = 324
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 112 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 170
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 171 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 229
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 230 TM--------AEDIHHWSE--CEAIIERLYPELERR 255
>gi|296449696|ref|ZP_06891466.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
gi|296261420|gb|EFH08245.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP08]
Length = 365
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 133 IFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 193 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 251 TLSHNLNIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 290
>gi|419874079|ref|ZP_14396035.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
gi|388351588|gb|EIL16800.1| DNA polymerase IV, partial [Escherichia coli O111:H11 str. CVM9534]
Length = 293
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 72 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 130
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 131 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 189
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 190 TM--------AEDIHHWSE--CEAIIERLYPELERR 215
>gi|432541635|ref|ZP_19778496.1| DNA polymerase IV [Escherichia coli KTE236]
gi|432546975|ref|ZP_19783773.1| DNA polymerase IV [Escherichia coli KTE237]
gi|432620356|ref|ZP_19856404.1| DNA polymerase IV [Escherichia coli KTE76]
gi|432813757|ref|ZP_20047568.1| DNA polymerase IV [Escherichia coli KTE115]
gi|431078152|gb|ELD85210.1| DNA polymerase IV [Escherichia coli KTE236]
gi|431085457|gb|ELD91562.1| DNA polymerase IV [Escherichia coli KTE237]
gi|431163277|gb|ELE63711.1| DNA polymerase IV [Escherichia coli KTE76]
gi|431368776|gb|ELG55007.1| DNA polymerase IV [Escherichia coli KTE115]
Length = 351
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|19568885|gb|AAL91954.1|AF483091_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|386742568|ref|YP_006215747.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
gi|384479261|gb|AFH93056.1| DNA polymerase IV [Providencia stuartii MRSN 2154]
Length = 351
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ E + T SAGIA K LAK+AS +NKP Q + ++ + SLP+KK+ +G
Sbjct: 129 QIFDELQLTASAGIAPIKFLAKIASDLNKPNGQYVITPQALPDFVWSLPLKKIPGVGKVT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + +G+ T GD+ + L + G G LW GI V L KS G
Sbjct: 189 AQKLLD-MGLETCGDVQSYDVVNLIKVMG-KFGQVLWERCHGIDERSVNPDRLRKSVGVE 246
Query: 122 KSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 162
++ +QHW LNQL EEL RL ++ ++RIA
Sbjct: 247 RTL--------AEDIQHWEDCLPLLNQLYEELEVRLMK-VKPDRRIA 284
>gi|296877987|ref|ZP_06902006.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
gi|296431055|gb|EFH16883.1| DNA-directed DNA polymerase IV [Clostridium difficile NAP07]
Length = 366
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 134 IFREVGLTSSAGVSYNKFLAKIASDLKKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 193
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 194 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 251
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 252 TLSHNLNIDE-EETRNILDELCEE----VCHRLKSSEKFGKTLTL 291
>gi|241663231|ref|YP_002981591.1| DNA polymerase IV [Ralstonia pickettii 12D]
gi|240865258|gb|ACS62919.1| DNA-directed DNA polymerase [Ralstonia pickettii 12D]
Length = 357
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V + G + LP+ ++ + GK+
Sbjct: 129 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVAELPVDRLFGV-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G G L ++ RGI +VQ + KS
Sbjct: 188 TAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHRQVQPSQIRKSVSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L+ L E+L+ R+
Sbjct: 247 ETYATD--LRTLDDCQRELSVLVEQLAARV 274
>gi|338215016|ref|YP_004646508.1| DNA polymerase IV [Runella slithyformis DSM 19594]
gi|336309135|gb|AEI52232.1| DNA polymerase IV [Runella slithyformis DSM 19594]
Length = 355
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 81/146 (55%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++++ T+ T SAG+++NK LAKLAS KP + + + +L + K + GK+
Sbjct: 129 RIVETTQLTASAGVSYNKFLAKLASDFRKPNGIYVIGPDEGEAFVANLTVNKFHGI-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
N+LG+ T DL +E L+ +G G++ +NIARGI V+A + KS GS
Sbjct: 188 TAEKMNQLGIQTGMDLKSKTEFFLRTHFG-KMGSYYYNIARGIDQRPVEADRIRKSVGSE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
+F R L+T+A ++ L L E++
Sbjct: 247 NTF--DRDLETLAEMEGGLLPLIEDV 270
>gi|427439515|ref|ZP_18924170.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
gi|425788351|dbj|GAC44958.1| DNA-directed DNA polymerase IV [Pediococcus lolii NGRI 0510Q]
Length = 377
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ T+ TCS GI++NK LAK+AS KP + V L +PI++ + +G K
Sbjct: 148 RIFNHTQLTCSTGISYNKFLAKMASEYAKPVGVAIIEKDDVGAFLKEMPIEQFRGVGKKT 207
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +ELGV DLLK SE+ L +G G L+ RG V + KS G
Sbjct: 208 IPKM-HELGVFKGADLLKLSENDLIHHFG-KFGYTLYRRVRGQDDRPVAYQRERKSIGKE 265
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS-SDSDSR 180
+++ P L T V L + ++L++ + + K + L L S F++ + +R
Sbjct: 266 ETYGKP--LVTENEVDQRLRLIAKKLAQAVTKRQKHGKTL--VLKLRYSDFETLTKRITR 321
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLR 210
+F Y AK D F G+R
Sbjct: 322 PEFLPTDSETYYFYAKQIFDEIADFSRGIR 351
>gi|424666909|ref|ZP_18103934.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
gi|401069578|gb|EJP78099.1| DNA polymerase IV [Stenotrophomonas maltophilia Ab55555]
Length = 364
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIATCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+ + + + +RI HT+ L
Sbjct: 249 DTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>gi|322373597|ref|ZP_08048133.1| DNA polymerase IV [Streptococcus sp. C150]
gi|321278639|gb|EFX55708.1| DNA polymerase IV [Streptococcus sp. C150]
Length = 365
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKIPEMDLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|306836469|ref|ZP_07469442.1| DNA-directed DNA polymerase IV [Corynebacterium accolens ATCC
49726]
gi|304567632|gb|EFM43224.1| DNA-directed DNA polymerase IV [Corynebacterium accolens ATCC
49726]
Length = 493
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 17/226 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET CS G K AK+ SG KP +P +L LP+ K+ +G
Sbjct: 164 IREETGLPCSIGAGSGKQFAKIGSGEAKPDGTYVIPADKQLEMLHPLPVGKLWGVGPVTE 223
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ +GV T+G L ++ +++ S G G LW +A+GI EV R + K +
Sbjct: 224 AKLKG-IGVETIGALAAMTQKEVEISIGSVVGLQLWQLAQGIDDREVAPRAISKQISTEH 282
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P+ L TVA V + + E RL D + + T+ L + F
Sbjct: 283 TY--PKDLLTVADVDAAITRAAEGAHRRLLKDGRGVRTV--TVKLRMADF---------H 329
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 227
S+S L Y T ++ T F+ L + G ++ G YSG
Sbjct: 330 IESRSTTLAYATDDLEVLTAAAFK--LARYPDELGPIRLVGVSYSG 373
>gi|254293831|ref|YP_003059854.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
gi|254042362|gb|ACT59157.1| DNA-directed DNA polymerase [Hirschia baltica ATCC 49814]
Length = 360
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LKET T SAG+++NK +AKLAS NKP Q +P S + + LPI++ +G
Sbjct: 133 EILKETGLTASAGVSYNKFIAKLASDENKPNGQCVIPPKSGEQFVAGLPIRRFYGVGPVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ LG+ T DL K L++++G N+ + + ARG VQ + KS G
Sbjct: 193 AKKMER-LGILTGADLKKADLSWLRQNFG-NSADYYYAAARGKDDRIVQPNRIRKSVGVE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+++ K + + L + E+L L +E+ + HT+ L
Sbjct: 251 RTYS-----KDLFEKEEILTE-TEKLITLLWERIERANAVGHTIVL 290
>gi|309782562|ref|ZP_07677285.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
gi|308918653|gb|EFP64327.1| DNA-directed DNA polymerase [Ralstonia sp. 5_7_47FAA]
Length = 357
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V + G + LP+ ++ +G
Sbjct: 129 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVAELPVDRLFGVGKVT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG T GDL + D+LQ+ +G G L ++ RGI +VQ + KS
Sbjct: 189 AAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHRQVQPSQIRKSVSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L+ L E+L+ R+
Sbjct: 247 ETYATD--LRTLDDCQRELSVLVEQLAARV 274
>gi|121606049|ref|YP_983378.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
gi|120595018|gb|ABM38457.1| DNA-directed DNA polymerase [Polaromonas naphthalenivorans CJ2]
Length = 431
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 6/166 (3%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T TCS G+A NK+LAK+AS NKP + V + ++ L+ L ++K+ +G K G
Sbjct: 180 IFEKTGLTCSIGVAPNKLLAKMASEFNKPNGISIVREADLQTLIWPLNVRKINGIGPKAG 239
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LG+ T+G+L L +G TG W+ +A G V P S
Sbjct: 240 EKLAR-LGIQTIGELAALDRQFLISQFGKATGAWMHEVAWGRDDSPVVTESEPVSMSRET 298
Query: 123 SFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F A++ A + +LCE+++ +DL++ +A T+ +
Sbjct: 299 TFERDLHAVRDKAELGAIFTRLCEQVA----ADLQRKGYVARTIGI 340
>gi|238787934|ref|ZP_04631730.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
gi|238723882|gb|EEQ15526.1| DNA polymerase IV [Yersinia frederiksenii ATCC 33641]
Length = 352
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IAAELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDKVLPFLHDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LQ ELG+ T D+ FS+ +L + +G G LW + GI EV L KS G +
Sbjct: 190 SKLQ-ELGLLTCSDVQHFSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ + W + CE L E+L ++LE R
Sbjct: 248 TL--------AEDIHDWSS--CESLIEQLYTELETRLR 275
>gi|332281409|ref|ZP_08393822.1| DNA polymerase IV [Shigella sp. D9]
gi|417627167|ref|ZP_12277415.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|432748683|ref|ZP_19983307.1| DNA polymerase IV [Escherichia coli KTE29]
gi|332103761|gb|EGJ07107.1| DNA polymerase IV [Shigella sp. D9]
gi|345378609|gb|EGX10537.1| DNA polymerase IV [Escherichia coli STEC_MHI813]
gi|431300789|gb|ELF90337.1| DNA polymerase IV [Escherichia coli KTE29]
Length = 351
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|310288038|ref|YP_003939297.1| DNA polymerase IV [Bifidobacterium bifidum S17]
gi|309251975|gb|ADO53723.1| DNA polymerase IV [Bifidobacterium bifidum S17]
Length = 430
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 EVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L+ ARG+ G V KS GS
Sbjct: 207 ERRLA-EWGVKTVADLAKMSEQTLTTAVGSQTMAHGLYMAARGMDGRAVTPYTPEKSIGS 265
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 266 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|119469761|ref|XP_001257973.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
gi|119406125|gb|EAW16076.1| DNA damage repair protein Mus42, putative [Neosartorya fischeri
NRRL 181]
Length = 1154
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 11 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 70
S GI N +LAK+A KPA Q + SV L+ L ++ + +G LG L+ ELG
Sbjct: 526 VSVGIGGNILLAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLE-ELG 584
Query: 71 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 130
V V D+ S +KL G TG +W ARGI EV +L KS + ++ G R +
Sbjct: 585 VKFVKDVRDVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNW-GIRFV 643
Query: 131 KTVASVQHWLNQLCEELSERLCSDLEQNKRI 161
+ + ++ LCEEL RL +L + K++
Sbjct: 644 NQTQA-EDFVKSLCEELHRRLSDNLVKGKQL 673
>gi|50547727|ref|XP_501333.1| YALI0C01573p [Yarrowia lipolytica]
gi|49647200|emb|CAG81630.1| YALI0C01573p [Yarrowia lipolytica CLIB122]
Length = 640
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 40/270 (14%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
QV +E ++TCSAGIA + +AKLAS NKP QT V ++ L + + +GGKL
Sbjct: 240 QVYEELKYTCSAGIARCRSVAKLASAQNKPNNQTVVRAGALNNYLKKKSLTDIGGMGGKL 299
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTW------------LWNIARGISGEEV 109
G + +LG L K S+D + + + ++N+ARG +
Sbjct: 300 GEEVLEKLG------LDKESKDNITQVQALSKQQLQQKLQNASLTEKVFNLARGNLYRGL 353
Query: 110 QARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK-----RIAHT 164
+ R+ KS S K+F LK + WL EL+ R+ +E K R T
Sbjct: 354 KTRIELKSMLSAKNF-ARVPLKDRKEAELWLVVFAGELAMRI---VEHEKELGTCRRPRT 409
Query: 165 LTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSH 224
++L + FK SR+ + PL + T K++E+ LF AG++ +
Sbjct: 410 VSLQHARFKPMVKRSRQ----QDLPLVH-TNKLKEE---LFAAGVK----LLKLIENEPE 457
Query: 225 YSGWRITALSVSASKIVPVLSGTCSIMKYF 254
+ + I+ LS+S + V + +G SI +F
Sbjct: 458 HDAYPISMLSLSVTGFVELPAG-ASIGHFF 486
>gi|417643636|ref|ZP_12293673.1| DNA polymerase IV [Staphylococcus warneri VCU121]
gi|445059261|ref|YP_007384665.1| DNA polymerase IV [Staphylococcus warneri SG1]
gi|330685556|gb|EGG97202.1| DNA polymerase IV [Staphylococcus epidermidis VCU121]
gi|443425318|gb|AGC90221.1| DNA polymerase IV [Staphylococcus warneri SG1]
Length = 356
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++TE T SAG+++NK LAKLASGMNKP T + +++V +L +L I + + GK
Sbjct: 132 ILEQTELTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHDILMNLDIGEFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ + DL E +L +G G L+N RGI EV++ + KS G+ +
Sbjct: 191 EKVMHDNQIFNGQDLYNKDEFELIRLFG-KRGRGLYNKVRGIDHNEVKSTRIRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|19568913|gb|AAL91968.1|AF483105_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K+ + GK+
Sbjct: 124 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|421892458|ref|ZP_16323115.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
gi|379981806|emb|CCG26837.1| DNA polymerase IV [Streptococcus pyogenes NS88.2]
Length = 364
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDAMCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
A + + + E+S +R+ + L+ +K++ T+ L + R
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRV 313
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQ------AGLR 210
P L A+I++ ++F AG+R
Sbjct: 314 TLPE----LTRNVAQIEQVAGDIFDSLSENPAGIR 344
>gi|332798579|ref|YP_004460078.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|438001559|ref|YP_007271302.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|332696314|gb|AEE90771.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
gi|432178353|emb|CCP25326.1| DNA polymerase IV [Tepidanaerobacter acetatoxydans Re1]
Length = 396
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 89/172 (51%), Gaps = 4/172 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KE + CS G++ NK+LAK+AS M KP T + V LL LP+ ++ +G ++
Sbjct: 131 IAKELDLLCSIGVSCNKLLAKMASDMKKPNAITVLTTEDVPKLLWPLPVNELFGVGRRMA 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ + + T+GDL + ++ L++++G N G++L A GI V + + G
Sbjct: 191 EKLK-RMNIKTIGDLAEAPQEFLEKAFGLN-GSYLHLWANGIDDSAVNPHSMDDAKSMGH 248
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
S P+ + + + L L E++ R+ + + + T+TL ++F +
Sbjct: 249 SITLPKDITSFDDAEIVLLFLSEQVGRRVRRENYMGRTV--TVTLRYASFDT 298
>gi|332286231|ref|YP_004418142.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
gi|330430184|gb|AEC21518.1| DNA-damage-inducible protein p [Pusillimonas sp. T7-7]
Length = 387
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T +CS GI+ NK+L+K+AS ++KP T + ++ + LP+ K+ +G K
Sbjct: 154 VFQATGLSCSIGISPNKLLSKIASELDKPDGITIIGPGDLEARIWPLPVSKVNGIGPKAN 213
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
T L G+ T+ +L + LQ +G + WL N+ARGI V PKS
Sbjct: 214 TRLAAA-GINTIAELAAAPPELLQSLFGLSYAQWLMNVARGIDNRPVVTYSEPKSISRET 272
Query: 123 SFPGPRAL-----KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L + V SVQ QLCE+L DL + + T+ +
Sbjct: 273 TF--ERDLHVQHDRKVLSVQFL--QLCEQLE----GDLLRKGYVGRTIGI 314
>gi|19568907|gb|AAL91965.1|AF483102_1 DNA polymerase DinB [Escherichia coli]
Length = 336
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 124 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 182
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T D+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 183 AAKLEAMGLRTCSDVQKCDLVTLLKRFG-KFGRILWECSQGIDERDVNSERLRKSVGVER 241
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 242 TM--------AEDIHHWSE--CEAIIERLYPELERR 267
>gi|373467387|ref|ZP_09558686.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
gi|371758922|gb|EHO47678.1| DNA polymerase IV [Haemophilus sp. oral taxon 851 str. F0397]
Length = 355
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAGIA K LAK+AS MNKP Q + + V + +LP+ K+ + GK+
Sbjct: 133 IFDELKLTASAGIAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLNKIPGV-GKVT 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++G+ T D+ F + L +G G +W+ + GI EVQA KS G +
Sbjct: 192 SQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKSVGVEQ 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
+ + T+ LN L +EL RL
Sbjct: 251 TL--IENIHTIEQASALLNNLYDELIRRL 277
>gi|228477003|ref|ZP_04061641.1| DNA polymerase IV [Streptococcus salivarius SK126]
gi|228251022|gb|EEK10193.1| DNA polymerase IV [Streptococcus salivarius SK126]
Length = 368
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|335419336|ref|ZP_08550391.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|335420991|ref|ZP_08552021.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|334893165|gb|EGM31383.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
gi|334896953|gb|EGM35095.1| DNA polymerase IV [Salinisphaera shabanensis E1L3A]
Length = 365
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T T SAGIA NK LAK+AS KP Q V V L LPI K+ +G K+
Sbjct: 140 EILEVTGLTASAGIAPNKFLAKIASDWRKPNGQFVVTPKRVDAFLLPLPIGKVPGVGPKM 199
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
L L V TVGDL F + +L + YG G L+ +ARGI VQ
Sbjct: 200 KEKLAA-LDVHTVGDLRAFEQAELVKRYG-RWGRRLYELARGIDERPVQ 246
>gi|340399531|ref|YP_004728556.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
gi|338743524|emb|CCB94034.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius CCHSS3]
Length = 368
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKVPEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|387126480|ref|YP_006295085.1| DNA polymerase IV [Methylophaga sp. JAM1]
gi|386273542|gb|AFI83440.1| DNA polymerase IV [Methylophaga sp. JAM1]
Length = 362
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 89/166 (53%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L ET T SAG+++NK LAK+AS M+KP + + ++ LPI K +G
Sbjct: 132 EILAETGLTASAGVSYNKFLAKIASDMDKPDGLYLIRPEQGQEFVNKLPIGKFHGIGPAT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++N LGV T DL + S +L E +G +G + +NIAR I V+++ + KS G
Sbjct: 192 EIKMKN-LGVHTGHDLRQKSLTELSERFG-KSGQYYYNIARAIDDRPVRSQRIRKSLGKE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + S+ LN + +++E++ L ++ T+T+
Sbjct: 250 TTFA-----EDILSIPD-LNNILLDVAEQVLGSLSKHNMQGRTVTV 289
>gi|417606183|ref|ZP_12256714.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
gi|345365850|gb|EGW97950.1| DNA polymerase IV [Escherichia coli STEC_DG131-3]
Length = 351
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPTFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKSDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|425420882|ref|ZP_18802115.1| DNA polymerase IV [Escherichia coli 0.1288]
gi|408348030|gb|EKJ62165.1| DNA polymerase IV [Escherichia coli 0.1288]
Length = 351
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQILPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|294782398|ref|ZP_06747724.1| DNA polymerase IV (Pol IV) [Fusobacterium sp. 1_1_41FAA]
gi|294481039|gb|EFG28814.1| DNA polymerase IV (Pol IV) [Fusobacterium sp. 1_1_41FAA]
Length = 352
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 10/190 (5%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL---GGKLGT 63
T TCS GI NK+ AK+AS +NKP F + K ++ + KK+K + G K
Sbjct: 129 TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKDFIEYISDKKIKIIPGVGRKFSE 186
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 123
L+++ + V D+ K+S D L + YG + G L+ RGI+ +EV+ S G+ ++
Sbjct: 187 ILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYEREIHSIGNEET 245
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
+ P L+T + ++ N L E +RL + ++ I T+ + +FK+ + KF
Sbjct: 246 YSIP--LQTTSELEREFNSLFEYTYQRLIKNNVFSQSI--TVKIRYISFKTYTKSKKLKF 301
Query: 184 PSKSCPLRYG 193
+K Y
Sbjct: 302 ATKDKDFLYN 311
>gi|319892936|ref|YP_004149811.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|386318846|ref|YP_006015009.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
gi|317162632|gb|ADV06175.1| DNA polymerase IV [Staphylococcus pseudintermedius HKU10-03]
gi|323464017|gb|ADX76170.1| DNA-directed DNA polymerase IV [Staphylococcus pseudintermedius
ED99]
Length = 356
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +T+ T SAG+++NK LAKLASGMNKP T + + +V +L L I + GK
Sbjct: 132 IYNQTQLTASAGVSYNKFLAKLASGMNKPNGLTVIDYQNVHDILMQLDIGDFPGI-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ G+ DL + SE +L +G G L+ RG EV+A + K+ G+ +
Sbjct: 191 KEKMHAKGIYNGQDLYEKSERELVYLFG-KRGHQLYQRVRGYDDREVKAERIRKTVGAER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F +L T + + Q E LSE++ LE+ + T+T+
Sbjct: 250 TF----SLDT--NDDEEILQKIEMLSEKIAQRLEKMNQAGRTVTV 288
>gi|350566930|ref|ZP_08935549.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
gi|348660650|gb|EGY77359.1| DNA-directed DNA polymerase IV [Peptoniphilus indolicus ATCC 29427]
Length = 349
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 29/242 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V T T S GI++NK LAKLAS NKP + + V +L L IKK+ LG K
Sbjct: 126 EVKDRTGLTVSCGISYNKFLAKLASDWNKPDGLKVISKNDVPDILLPLDIKKVHGLGRKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+N +G+ TV D+ + + L++ +G G ++ RGI V ++ KS G
Sbjct: 186 QEKLRN-IGINTVEDMFQLDLEFLEKIFG-KMGYEIYQRIRGIDNRAVNSQRSRKSLGVE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++FP R + LN+L + S L DL TLTL F + K
Sbjct: 244 RTFPDTRDKYIL------LNRLI-QYSVELSKDLSSKNLGFKTLTLKLKTFDFKINTHSK 296
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIV 241
+ + + D + L F +HY G ++ + +SAS +
Sbjct: 297 TY-----------SHVINDKQEIENLALELF---------NTHYKGEKLRLMGISASNLQ 336
Query: 242 PV 243
P+
Sbjct: 337 PL 338
>gi|294621762|ref|ZP_06700922.1| DNA polymerase IV [Enterococcus faecium U0317]
gi|291598649|gb|EFF29706.1| DNA polymerase IV [Enterococcus faecium U0317]
Length = 321
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 144 IWESVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 203
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 204 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 262 TYGQP--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|419134618|ref|ZP_13679427.1| DNA polymerase IV [Escherichia coli DEC5E]
gi|377988341|gb|EHV51519.1| DNA polymerase IV [Escherichia coli DEC5E]
Length = 351
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L + P+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTFPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|354596399|ref|ZP_09014416.1| DNA polymerase IV [Brenneria sp. EniD312]
gi|353674334|gb|EHD20367.1| DNA polymerase IV [Brenneria sp. EniD312]
Length = 352
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAG+A K LAK+AS +NKP Q +P + + LP+ K+ +G
Sbjct: 130 IAAELNLTASAGVAPIKFLAKVASELNKPNGQFVIPPDRMDAFILQLPLAKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ E G+ T D+ +S +L ++G G LW GI V L KS G K
Sbjct: 190 KRLE-EKGLLTCADVRHYSLAELLRNFG-KFGRVLWERCHGIDERSVSPDRLRKSVGVEK 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLE-QNKRIAHTLTLHASAFKSSDSDSRK 181
+ + HW CE L E+L +LE + KR+ L + K D R+
Sbjct: 248 TL--------AQDIHHW--HECEGLIEQLYQELELRLKRVKPDLHIARQGVKLKFDDFRQ 297
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
P+ ++D L Q RE GV+ G H +
Sbjct: 298 TTQEHVWPVLN-----KQDLLTLAQQTWRERRDKRGVRLVGLHVT 337
>gi|375144729|ref|YP_005007170.1| DNA polymerase IV [Niastella koreensis GR20-10]
gi|361058775|gb|AEV97766.1| DNA polymerase IV [Niastella koreensis GR20-10]
Length = 358
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + T SAG++ NK +AK+AS MNKP T +P V+ ++SLP+ K + GK+
Sbjct: 136 ELQLTASAGVSINKFVAKIASDMNKPDGLTFIPPDKVEAFMESLPVNKFHGV-GKVTAEK 194
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
N L + T DL K +E +L +G G++ + I RGI V+ KS + +F
Sbjct: 195 MNTLNLFTGADLKKLTEVELVRLFG-KPGSFYYKIVRGIDDRPVEPNRETKSISAEDTFL 253
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
L ++ L++L ++ RL + K I TL + S FK
Sbjct: 254 ND--LDNPVEMKEQLDRLAAVVTNRLQQYELKGKTI--TLKIRYSDFK 297
>gi|410658983|ref|YP_006911354.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|410661970|ref|YP_006914341.1| DNA polymerase IV [Dehalobacter sp. CF]
gi|409021338|gb|AFV03369.1| DNA polymerase IV [Dehalobacter sp. DCA]
gi|409024326|gb|AFV06356.1| DNA polymerase IV [Dehalobacter sp. CF]
Length = 387
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T S G+A NK LAK+AS + KP VP V+ LD L ++++ +G K
Sbjct: 135 RIRQELGLTASVGLAPNKFLAKIASDLQKPNGFVVVPPDKVQEFLDPLEVERVWGVGIKT 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L +EL V TV DL E L + +G G L+ +ARGI V+ + KS G
Sbjct: 195 AEQL-HELRVRTVKDLRSLDESALSKRFGV-MGKRLYELARGIDNRSVETERMTKSVGRE 252
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F L +A V +L E L D+ + R H+L K+ D R
Sbjct: 253 TTF-----LSDIADVDVLEKELLE-----LAVDVGRRMR-KHSLKAKTITLKARYPDFRT 301
Query: 182 KFPSKSCP 189
S + P
Sbjct: 302 LSRSSTLP 309
>gi|410495674|ref|YP_006905520.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
gi|410440834|emb|CCI63462.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
AC-2713]
Length = 365
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVVALLQDHKKLGKTIVL 299
>gi|404396203|ref|ZP_10987998.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
gi|348614689|gb|EGY64228.1| DNA polymerase IV [Ralstonia sp. 5_2_56FAA]
Length = 340
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V + G + LP+ ++ +G
Sbjct: 112 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDGFVAELPVDRLFGVGKVT 171
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG T GDL + D+LQ+ +G G L ++ RGI +VQ + KS
Sbjct: 172 AAELRR-LGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHRQVQPSQIRKSVSVE 229
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L+ L E+L+ R+
Sbjct: 230 ETYATD--LRTLDDCQRELSVLVEQLAARV 257
>gi|198284367|ref|YP_002220688.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666878|ref|YP_002427031.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198248888|gb|ACH84481.1| DNA-directed DNA polymerase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519091|gb|ACK79677.1| DNA polymerase IV [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 378
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+++NK+LAKLAS KP VP L LP+ K+ +G
Sbjct: 140 RIERETGLTASAGVSYNKLLAKLASEWRKPNGLFVVPPEHGLAFLAPLPVGKLHGVGPAT 199
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + +G+ TV DL S + L +G G W + +ARGI VQ KS G
Sbjct: 200 VKKL-SAMGIHTVLDLRNASREVLIAQFG-KAGLWFYEVARGIDSRPVQTSRQRKSVGYE 257
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++F P+ L+ + L Q+ ++S RL
Sbjct: 258 RTF--PQNLEDPKVMLSTLRQMAGQVSARL 285
>gi|421453095|ref|ZP_15902451.1| DNA polymerase IV [Streptococcus salivarius K12]
gi|400181404|gb|EJO15671.1| DNA polymerase IV [Streptococcus salivarius K12]
Length = 369
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMEIYTGADLLKIPEMTLIDCFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|387784781|ref|YP_006070864.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
gi|338745663|emb|CCB96029.1| DNA polymerase IV (Pol IV) [Streptococcus salivarius JIM8777]
Length = 369
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|329119433|ref|ZP_08248118.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464366|gb|EGF10666.1| DNA-directed DNA polymerase IV [Neisseria bacilliformis ATCC
BAA-1200]
Length = 358
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L ET T SAGIA NK LAK+AS +KP Q ++P ++ L +LP+ K+ + GK+
Sbjct: 131 ILAETGLTASAGIAPNKFLAKIASDWHKPDGQFSLPPQKIEAFLAALPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
+ LG+ T GDL + +L +G G L+++ARGI V+A
Sbjct: 190 LQKMHRLGLKTAGDLRRMERGELANLFG-KWGYRLYDLARGIDNRPVKA 237
>gi|417926930|ref|ZP_12570318.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
gi|340764804|gb|EGR87330.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1250]
Length = 365
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFNLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|168261272|ref|ZP_02683245.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|205350046|gb|EDZ36677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
Length = 351
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQRCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|168206793|ref|ZP_02632798.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
gi|170661821|gb|EDT14504.1| DNA polymerase IV [Clostridium perfringens E str. JGS1987]
Length = 359
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + +LPI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNLPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L+++ E ++E LC
Sbjct: 248 KEITLREDIEDIEEMIEILDKIAERVNESLC 278
>gi|241258700|ref|YP_002978584.1| DNA polymerase IV [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863170|gb|ACS60833.1| DNA-directed DNA polymerase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 365
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T T SAGI++NK LAK+AS NKP Q + + ++ LP+KK +G +Q
Sbjct: 143 TGLTASAGISYNKFLAKMASDQNKPDGQFVITPKNGPAFVERLPVKKFHGVGPATAEKMQ 202
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
LG+ T DL + + D L E +G +G + + IARGI +V+ + KS G+ +F
Sbjct: 203 R-LGIETGADLKERTLDFLVEHFG-KSGPYFYGIARGIDNRQVKPDRVRKSIGAEDTF 258
>gi|408402364|ref|YP_006860328.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
gi|407968593|dbj|BAM61831.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
RE378]
Length = 365
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|255536316|ref|YP_003096687.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
gi|255342512|gb|ACU08625.1| DNA polymerase IV [Flavobacteriaceae bacterium 3519-10]
Length = 360
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAGI+ NK LAK+AS NKP Q T+ + + ++ LPI+K + GK+
Sbjct: 130 RIYEETGLTASAGISVNKFLAKVASDYNKPNGQKTIHPTQILEFMEELPIEKFYGI-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +E+ + DL S ++L +G +G + +N+ RGI EV+ + KS
Sbjct: 189 TANKMHEMHIFKGADLKNKSLEELIRLFG-KSGNYYYNVVRGIHNSEVKPHRIQKSVAVE 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
++F L V L + EEL ERL
Sbjct: 248 ETFWD--NLLDEEQVFAQLKTISEELEERLL 276
>gi|408404503|ref|YP_006862486.1| DNA polymerase IV [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365099|gb|AFU58829.1| DNA polymerase IV [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 378
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V K+ TCS G+A NKMLAK+AS ++KP T + + + + ++ +G K
Sbjct: 147 VKKQASLTCSVGVAPNKMLAKIASDLHKPDGLTVIEPDDAARFIAGMDVGRIPGVGPKTC 206
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 109
L ELG+ T+GDL KF +L E +G T++ N ++GI E V
Sbjct: 207 ERL-GELGIKTIGDLAKFDLFRLIEEFGKKNATYMHNASKGIDDEPV 252
>gi|417752573|ref|ZP_12400765.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333771630|gb|EGL48550.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 365
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|251783287|ref|YP_002997592.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242391919|dbj|BAH82378.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
Length = 365
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|333912981|ref|YP_004486713.1| DNA polymerase IV [Delftia sp. Cs1-4]
gi|333743181|gb|AEF88358.1| DNA polymerase IV [Delftia sp. Cs1-4]
Length = 440
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T TCS G+A NK+LAK+AS NKP + V ++ ++ L +K+ +G K LQ
Sbjct: 193 TGLTCSIGVAPNKLLAKMASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQ 252
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ LG+ T+G+L K S +L + +G G WL ++ G V P S +F
Sbjct: 253 S-LGIQTIGELAKQSLPQLVQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTF-- 309
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDSDSRKKFP 184
R L V + L+ + +L ERL DL++ + T + L FK++ D + P
Sbjct: 310 ERDLHAVRD-RAELSAIFTDLCERLAQDLQRKGYMGRTVGIKLRYDDFKTATRDHTLELP 368
>gi|386317724|ref|YP_006013888.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
gi|422759836|ref|ZP_16813598.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|322412671|gb|EFY03579.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
gi|323128011|gb|ADX25308.1| DNA polymerase IV [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 365
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS KP T V L LPI+K +G K L
Sbjct: 146 EVHLTCSAGVSYNKFLAKLASDFEKPHGLTLVLPQDALSFLADLPIEKFHGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HEMGIYTGQDLLEVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPNRIRKSIGSERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ + R+ + L+ +K++ T+ L
Sbjct: 263 -AKLLYQEADIKAEISK----NARRVAALLQDHKKLGKTIVL 299
>gi|160900719|ref|YP_001566301.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
gi|160366303|gb|ABX37916.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1]
Length = 437
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T TCS G+A NK+LAK+AS NKP + V ++ ++ L +K+ +G K LQ
Sbjct: 190 TGLTCSIGVAPNKLLAKMASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQ 249
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ LG+ T+G+L K S +L + +G G WL ++ G V P S +F
Sbjct: 250 S-LGIQTIGELAKQSLPQLVQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTF-- 306
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDSDSRKKFP 184
R L V + L+ + +L ERL DL++ + T + L FK++ D + P
Sbjct: 307 ERDLHAVRD-RAELSAIFTDLCERLAQDLQRKGYMGRTVGIKLRYDDFKTATRDHTLELP 365
>gi|121998646|ref|YP_001003433.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
gi|254781922|sp|A1WY69.1|DPO4_HALHL RecName: Full=DNA polymerase IV; Short=Pol IV
gi|121590051|gb|ABM62631.1| DNA-directed DNA polymerase [Halorhodospira halophila SL1]
Length = 356
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+++NK+LAKLAS KP VP + + PI+++ +G
Sbjct: 131 RIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRLHGVGPAT 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG+ VGDLL + L G GT L + ARGI V+ R KS G+
Sbjct: 191 AARLER-LGIRQVGDLLDWELADLHVFLGNRAGT-LHDAARGIDHRPVRPRRSRKSIGAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + + L L +++ R LE ++ +A T+TL
Sbjct: 249 RTFGDD--TRDLGEIHQRLAPLITKVATR----LEHHELVARTVTL 288
>gi|410681235|ref|YP_006933637.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
gi|409693824|gb|AFV38684.1| impB/mucB/samB family protein [Streptococcus pyogenes A20]
Length = 323
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 143 IWKEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +
Sbjct: 203 KKL-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSER 260
Query: 123 SFPGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
++ A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 261 TY---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|21911131|ref|NP_665399.1| DNA polymerase IV [Streptococcus pyogenes MGAS315]
gi|28895184|ref|NP_801534.1| DNA polymerase IV [Streptococcus pyogenes SSI-1]
gi|341958651|sp|P0DA78.1|DPO4_STRP3 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|341958652|sp|P0DA79.1|DPO4_STRPQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|21905342|gb|AAM80202.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS315]
gi|28810429|dbj|BAC63367.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
SSI-1]
Length = 365
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>gi|383451945|ref|YP_005358666.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
gi|380503567|emb|CCG54609.1| DNA polymerase IV, damage-inducible protein DinB [Flavobacterium
indicum GPTSA100-9]
Length = 359
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T T SAGI+ NK +AK+AS NKP Q TV V+ ++ L +KK + GK+
Sbjct: 133 KIFEKTGLTASAGISVNKFVAKIASDYNKPNGQKTVNPDEVEAFIEVLDVKKFYGI-GKV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL + + L++ +G N+G +N++RGIS +V+ KS G+
Sbjct: 192 TAEKMYQLGIYTGLDLKNKTLEYLEQHFG-NSGQAFYNLSRGISYSQVKPNRQMKSIGAE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F L + ++ L + E+ R +++ K T+TL K SD +
Sbjct: 251 RTF--NENLSSEIYMEERLENIASEIERR----IKKYKISGKTITL-----KIKYSDFTQ 299
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 300 QTRSKTLP 307
>gi|340752758|ref|ZP_08689554.1| DNA polymerase IV [Fusobacterium sp. 2_1_31]
gi|340567209|gb|EEO37603.2| DNA polymerase IV [Fusobacterium sp. 2_1_31]
Length = 347
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 10/190 (5%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL---GGKLGT 63
T TCS GI NK+ AK+AS +NKP F + K ++ + KK+K + G K
Sbjct: 124 TNLTCSVGIGFNKLSAKIASDINKPF--GIYIFENEKDFVEYISDKKIKIIPGVGKKFFE 181
Query: 64 SLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKS 123
L+++ + V D+ K+S D L + YG + G L+ RGI+ +EV+ S G+ ++
Sbjct: 182 ILKHD-KIFLVKDVFKYSLDYLVKKYGKSRGENLYCSVRGINHDEVEYEREIHSIGNEET 240
Query: 124 FPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
+ P L+T + ++ N L E +RL + ++ + T+ + S+FK+ + KF
Sbjct: 241 YSIP--LQTNSELEREFNSLFEYTYQRLLKNNVFSQSV--TVKIRYSSFKTYTKSKKLKF 296
Query: 184 PSKSCPLRYG 193
+K Y
Sbjct: 297 ATKDKDFLYN 306
>gi|224075337|ref|XP_002304595.1| predicted protein [Populus trichocarpa]
gi|222842027|gb|EEE79574.1| predicted protein [Populus trichocarpa]
Length = 108
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%), Gaps = 12/92 (13%)
Query: 441 NQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEIQA 500
NQ +P+ LAE +T S + DQ QR+ W +I+EID S+++ELP EIQDEI+
Sbjct: 22 NQAELPRRSLAECSTNDGSNNL---DQNAQRA--WNYKIDEIDHSIVNELPSEIQDEIRV 76
Query: 501 WL----RPS--KRPHRVKQGFTIADYFSPSKN 526
WL +PS KRP +K+G +IA YFSP +N
Sbjct: 77 WLQARQQPSMVKRPSIIKRG-SIAHYFSPDRN 107
>gi|373458216|ref|ZP_09549983.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
gi|371719880|gb|EHO41651.1| DNA polymerase IV [Caldithrix abyssi DSM 13497]
Length = 406
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 15/193 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + + S GI NK++A++ASG+ KP VP + L LP+ + +G
Sbjct: 132 EVWRRVGVSLSVGIGSNKVIARIASGLKKPGGVVEVPAGKEREFLAGLPVDALPGIGPMA 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L +LG+ VG L + + +++ +G N G +W+ ARG V A++ PK
Sbjct: 192 REKL-FDLGIFKVGQLARLPKGIMEQLFGKN-GIKIWHFARGEDDRPVAAKIFPKQISRE 249
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF A + V+ L LCE + ++L S+ LT A A K SD
Sbjct: 250 TSFEEDTA--DLELVRGTLQYLCERIGKKLRSE---------ELTCRALAIKIKYSDF-- 296
Query: 182 KFPSKSCPLRYGT 194
KF + S L + T
Sbjct: 297 KFHTASARLPFAT 309
>gi|307545563|ref|YP_003898042.1| DNA polymerase IV [Halomonas elongata DSM 2581]
gi|307217587|emb|CBV42857.1| DNA polymerase IV [Halomonas elongata DSM 2581]
Length = 348
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+ L T T S G+A K LAK+AS KP T +P V + +LP+ K+ +G
Sbjct: 129 ECLARTGITVSVGVAPAKFLAKIASDWEKPDGLTVIPPEQVDTFVATLPVHKLHGVGPAT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG+ T DL + ++L + +G G L+ +ARGI V+ KS
Sbjct: 189 AARLEA-LGIATCSDLRRLPFERLIDEFG-KFGRRLFELARGIDERPVRTERERKSISVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F + L ++S Q L LCE L ERL
Sbjct: 247 TTF--EQDLPDLSSAQQALAPLCERLKERL 274
>gi|424107414|ref|ZP_17842022.1| DNA polymerase IV [Escherichia coli 93-001]
gi|390670609|gb|EIN47151.1| DNA polymerase IV [Escherichia coli 93-001]
Length = 343
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 122 IFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 181 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 239
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 240 TM--------AEDIHHWSE--CEAIIERLYPELERR 265
>gi|421854046|ref|ZP_16286683.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371477685|dbj|GAB31886.1| DNA polymerase IV [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 359
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+ +G
Sbjct: 133 ILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAFHGVGPATA 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ LG+ T DL +FS D L++ +G + + IARG V+ KS G
Sbjct: 193 RRMRT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRPRKSLGKEV 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEEL 147
+F + L+T A + L +L ++
Sbjct: 251 TF--EQDLRTPAELHAALRELASKV 273
>gi|332530928|ref|ZP_08406852.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
gi|332039616|gb|EGI76018.1| DNA-directed DNA polymerase [Hylemonella gracilis ATCC 19624]
Length = 404
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T TCS G+A NK+LAK+AS NKP + V S ++ + LP +K+ +G K
Sbjct: 188 IFEATGLTCSIGVAPNKLLAKMASEFNKPKGISIVQVSDLQEKIWPLPCRKINGIGPKTD 247
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ L ++T+G+L S+ +L E +G + G WL A G V P S
Sbjct: 248 EKLQA-LSISTIGELAARSKGELVERFGRSYGAWLHEAAWGRDERPVVTESEPVSVSRET 306
Query: 123 SFPGP-RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTL--TLHASAFKSSDSDS 179
+F A++ A + LC ER+ +DL++ T+ L + FKS D
Sbjct: 307 TFERDLHAVRDKAELAAIFTSLC----ERVAADLQRKGYEGRTIGVKLRYADFKSVTRDQ 362
Query: 180 RKKF 183
F
Sbjct: 363 TLDF 366
>gi|402493090|ref|ZP_10839845.1| DNA polymerase IV 2 [Aquimarina agarilytica ZC1]
Length = 364
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++T T SAGI+ NK +AK+AS NKP Q TV V L++L IKK + GK+
Sbjct: 133 KILEKTGLTASAGISINKFIAKVASDYNKPNGQKTVIPGEVLDFLENLDIKKFYGV-GKV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL +E L +++G +G + I RGI V K H +
Sbjct: 192 TQKKMYALGIYTGADLKTKTEAYLTQNFG-KSGAHYFRIVRGIHNSPV------KPHRTR 244
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS R + + ++ +ELS+ L L ++K T+TL
Sbjct: 245 KSIGAERTFNENLASEIYMEARLKELSDELERRLLKSKVAGKTITL 290
>gi|444983740|ref|ZP_21300613.1| DNA polymerase IV [Escherichia coli PA11]
gi|444600772|gb|ELV75593.1| DNA polymerase IV [Escherichia coli PA11]
Length = 351
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|71911381|ref|YP_282931.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
gi|71854163|gb|AAZ52186.1| DNA polymerase IV [Streptococcus pyogenes MGAS5005]
Length = 364
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVKK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|15799936|ref|NP_285948.1| DNA polymerase IV [Escherichia coli O157:H7 str. EDL933]
gi|15829512|ref|NP_308285.1| DNA polymerase IV [Escherichia coli O157:H7 str. Sakai]
gi|168763472|ref|ZP_02788479.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|217324216|ref|ZP_03440300.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|387880812|ref|YP_006311114.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|416314767|ref|ZP_11658954.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|419045011|ref|ZP_13591967.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|419049925|ref|ZP_13596836.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|419059657|ref|ZP_13606456.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|419060440|ref|ZP_13607226.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|419107283|ref|ZP_13652393.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|421816484|ref|ZP_16252053.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|421828626|ref|ZP_16263957.1| DNA polymerase IV [Escherichia coli PA7]
gi|423712146|ref|ZP_17686450.1| DNA polymerase IV [Escherichia coli PA31]
gi|424075040|ref|ZP_17812418.1| DNA polymerase IV [Escherichia coli FDA505]
gi|424122327|ref|ZP_17855737.1| DNA polymerase IV [Escherichia coli PA5]
gi|424138355|ref|ZP_17870684.1| DNA polymerase IV [Escherichia coli PA14]
gi|424144804|ref|ZP_17876602.1| DNA polymerase IV [Escherichia coli PA15]
gi|424450070|ref|ZP_17901839.1| DNA polymerase IV [Escherichia coli PA32]
gi|424453353|ref|ZP_17904925.1| DNA polymerase IV [Escherichia coli PA33]
gi|424472686|ref|ZP_17922388.1| DNA polymerase IV [Escherichia coli PA42]
gi|424523797|ref|ZP_17967852.1| DNA polymerase IV [Escherichia coli EC4421]
gi|424530007|ref|ZP_17973663.1| DNA polymerase IV [Escherichia coli EC4422]
gi|425095675|ref|ZP_18498721.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|425123424|ref|ZP_18525028.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|425160107|ref|ZP_18559300.1| DNA polymerase IV [Escherichia coli FDA506]
gi|425165616|ref|ZP_18564444.1| DNA polymerase IV [Escherichia coli FDA507]
gi|425171899|ref|ZP_18570322.1| DNA polymerase IV [Escherichia coli FDA504]
gi|425183923|ref|ZP_18581573.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|425209419|ref|ZP_18605181.1| DNA polymerase IV [Escherichia coli PA4]
gi|425215468|ref|ZP_18610807.1| DNA polymerase IV [Escherichia coli PA23]
gi|425222039|ref|ZP_18616918.1| DNA polymerase IV [Escherichia coli PA49]
gi|425228286|ref|ZP_18622702.1| DNA polymerase IV [Escherichia coli PA45]
gi|425234586|ref|ZP_18628564.1| DNA polymerase IV [Escherichia coli TT12B]
gi|425408572|ref|ZP_18790754.1| DNA polymerase IV [Escherichia coli NE098]
gi|425414858|ref|ZP_18796515.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|425426008|ref|ZP_18807081.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|428950826|ref|ZP_19022984.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|428956675|ref|ZP_19028401.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|428975628|ref|ZP_19045824.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|428981341|ref|ZP_19051099.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|428987616|ref|ZP_19056929.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|428993428|ref|ZP_19062357.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|429005744|ref|ZP_19073696.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|429012110|ref|ZP_19079387.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|429018347|ref|ZP_19085150.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|429023995|ref|ZP_19090434.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|429045093|ref|ZP_19109852.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|429048246|ref|ZP_19112910.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|429059300|ref|ZP_19123467.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|429076537|ref|ZP_19139763.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429823779|ref|ZP_19355316.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429830138|ref|ZP_19361035.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444956342|ref|ZP_21274359.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444961688|ref|ZP_21279458.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|445026927|ref|ZP_21342712.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|445048918|ref|ZP_21364097.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|445054545|ref|ZP_21369503.1| DNA polymerase IV [Escherichia coli 99.0670]
gi|22095615|sp|Q8X7Q1.1|DPO4_ECO57 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|12513002|gb|AAG54556.1|AE005201_9 damage-inducible protein P; putative tRNA synthetase [Escherichia
coli O157:H7 str. EDL933]
gi|13359715|dbj|BAB33681.1| damage-inducible protein DinP [Escherichia coli O157:H7 str. Sakai]
gi|189366404|gb|EDU84820.1| DNA polymerase IV [Escherichia coli O157:H7 str. EC4501]
gi|209745366|gb|ACI70990.1| damage-inducible protein DinP [Escherichia coli]
gi|217320437|gb|EEC28861.1| DNA polymerase IV [Escherichia coli O157:H7 str. TW14588]
gi|326338762|gb|EGD62581.1| DNA polymerase IV [Escherichia coli O157:H7 str. 1044]
gi|377897027|gb|EHU61415.1| impB/mucB/samB family protein [Escherichia coli DEC3A]
gi|377900349|gb|EHU64682.1| impB/mucB/samB family protein [Escherichia coli DEC3B]
gi|377902286|gb|EHU66592.1| impB/mucB/samB family protein [Escherichia coli DEC3C]
gi|377918852|gb|EHU82897.1| impB/mucB/samB family protein [Escherichia coli DEC3D]
gi|377967154|gb|EHV30560.1| impB/mucB/samB family protein [Escherichia coli DEC4F]
gi|386794270|gb|AFJ27304.1| DNA polymerase IV [Escherichia coli Xuzhou21]
gi|390653899|gb|EIN31990.1| DNA polymerase IV [Escherichia coli FDA505]
gi|390684103|gb|EIN59733.1| DNA polymerase IV [Escherichia coli PA5]
gi|390711159|gb|EIN84143.1| DNA polymerase IV [Escherichia coli PA15]
gi|390714385|gb|EIN87294.1| DNA polymerase IV [Escherichia coli PA14]
gi|390744762|gb|EIO15604.1| DNA polymerase IV [Escherichia coli PA32]
gi|390745592|gb|EIO16385.1| DNA polymerase IV [Escherichia coli PA31]
gi|390756602|gb|EIO26105.1| DNA polymerase IV [Escherichia coli PA33]
gi|390779287|gb|EIO47006.1| DNA polymerase IV [Escherichia coli PA42]
gi|390861056|gb|EIP23337.1| DNA polymerase IV [Escherichia coli EC4421]
gi|390872231|gb|EIP33571.1| DNA polymerase IV [Escherichia coli EC4422]
gi|408072826|gb|EKH07143.1| DNA polymerase IV [Escherichia coli PA7]
gi|408090828|gb|EKH24085.1| DNA polymerase IV [Escherichia coli FDA506]
gi|408096503|gb|EKH29442.1| DNA polymerase IV [Escherichia coli FDA507]
gi|408103331|gb|EKH35702.1| DNA polymerase IV [Escherichia coli FDA504]
gi|408117126|gb|EKH48357.1| DNA polymerase IV [Escherichia coli FRIK1997]
gi|408141950|gb|EKH71370.1| DNA polymerase IV [Escherichia coli PA4]
gi|408150648|gb|EKH79212.1| DNA polymerase IV [Escherichia coli PA23]
gi|408153774|gb|EKH82149.1| DNA polymerase IV [Escherichia coli PA49]
gi|408159116|gb|EKH87218.1| DNA polymerase IV [Escherichia coli PA45]
gi|408167378|gb|EKH94890.1| DNA polymerase IV [Escherichia coli TT12B]
gi|408337814|gb|EKJ52499.1| DNA polymerase IV [Escherichia coli NE098]
gi|408350941|gb|EKJ64767.1| DNA polymerase IV [Escherichia coli FRIK523]
gi|408353439|gb|EKJ66949.1| DNA polymerase IV [Escherichia coli 0.1304]
gi|408560046|gb|EKK36332.1| DNA polymerase IV [Escherichia coli 3.4870]
gi|408585788|gb|EKK60616.1| DNA polymerase IV [Escherichia coli 8.0586]
gi|408617843|gb|EKK90946.1| DNA polymerase IV [Escherichia coli 10.0821]
gi|427215048|gb|EKV84278.1| DNA polymerase IV [Escherichia coli 88.1042]
gi|427218210|gb|EKV87237.1| DNA polymerase IV [Escherichia coli 89.0511]
gi|427234897|gb|EKW02565.1| DNA polymerase IV [Escherichia coli 90.2281]
gi|427251839|gb|EKW18366.1| DNA polymerase IV [Escherichia coli 93.0056]
gi|427253688|gb|EKW20096.1| DNA polymerase IV [Escherichia coli 93.0055]
gi|427254673|gb|EKW20996.1| DNA polymerase IV [Escherichia coli 94.0618]
gi|427271306|gb|EKW36136.1| DNA polymerase IV [Escherichia coli 95.0943]
gi|427277961|gb|EKW42463.1| DNA polymerase IV [Escherichia coli 95.1288]
gi|427287088|gb|EKW50897.1| DNA polymerase IV [Escherichia coli 96.0428]
gi|427293012|gb|EKW56307.1| DNA polymerase IV [Escherichia coli 96.0427]
gi|427301119|gb|EKW64008.1| DNA polymerase IV [Escherichia coli 96.0107]
gi|427305111|gb|EKW67718.1| DNA polymerase IV [Escherichia coli 97.0003]
gi|427323346|gb|EKW84928.1| DNA polymerase IV [Escherichia coli 97.0007]
gi|427335084|gb|EKW96132.1| DNA polymerase IV [Escherichia coli 99.0713]
gi|429260584|gb|EKY44141.1| DNA polymerase IV [Escherichia coli 96.0109]
gi|429262171|gb|EKY45533.1| DNA polymerase IV [Escherichia coli 97.0010]
gi|444583318|gb|ELV59045.1| DNA polymerase IV [Escherichia coli 99.1753]
gi|444586342|gb|ELV61854.1| DNA polymerase IV [Escherichia coli 99.1775]
gi|444650657|gb|ELW23483.1| DNA polymerase IV [Escherichia coli 99.1781]
gi|444673232|gb|ELW44885.1| DNA polymerase IV [Escherichia coli 95.0083]
gi|444674790|gb|ELW46299.1| DNA polymerase IV [Escherichia coli 99.0670]
Length = 351
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|89889949|ref|ZP_01201460.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
gi|89518222|gb|EAS20878.1| DNA polymerase IV, damage-inducible protein [Flavobacteria
bacterium BBFL7]
Length = 361
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 6/173 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGI+ NK +AK+AS NKP Q T+ V L+ L I+K +G
Sbjct: 133 RIYETTGLTASAGISINKFVAKIASDYNKPNGQKTITPEEVIPFLEELEIRKFHGIGKVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + G+ T L + S + LQE +G +G +NI RGI V+ + KS G+
Sbjct: 193 AEKMYLQ-GIFTGAHLKERSLEFLQEHFG-KSGAHYYNIVRGIHHSPVKPDRIRKSLGAE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
++F + + ++ L Q+ EE+ +RL + K + TL + S FK+
Sbjct: 251 RTF--SENISSEIFMKERLTQIAEEIEKRLAKNDVAGKTV--TLKIKYSDFKT 299
>gi|417503427|ref|ZP_12173976.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
gi|353652129|gb|EHC94042.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Senftenberg str. A4-543]
Length = 304
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 135 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 194
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 195 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 252
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 253 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|19746777|ref|NP_607913.1| DNA polymerase IV [Streptococcus pyogenes MGAS8232]
gi|24211640|sp|Q8NZI1.1|DPO4_STRP8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|19749010|gb|AAL98412.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes
MGAS8232]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|406663875|ref|ZP_11071888.1| DNA polymerase IV [Cecembia lonarensis LW9]
gi|405551867|gb|EKB47480.1| DNA polymerase IV [Cecembia lonarensis LW9]
Length = 361
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K + GK+
Sbjct: 131 RIREEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEKFFGI-GKV 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+G+ DL +FS L + +G +G +NI RGI EVQ + KS +
Sbjct: 190 TAEKMKSIGIHNGHDLKQFSIQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNRIRKSLSAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F + L S + L ++ EEL R+
Sbjct: 249 NTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|139473158|ref|YP_001127873.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
gi|189044614|sp|A2RCQ1.1|DPO4_STRPG RecName: Full=DNA polymerase IV; Short=Pol IV
gi|134271404|emb|CAM29624.1| DNA polymerase IV [Streptococcus pyogenes str. Manfredo]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|386363358|ref|YP_006072689.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
gi|350277767|gb|AEQ25135.1| impB/mucB/samB family protein [Streptococcus pyogenes Alab49]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
A + + + E+S +R+ + L+ +K++ T+ L + R
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRV 313
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQ------AGLR 210
P L A+I++ ++F AG+R
Sbjct: 314 TLPE----LTRNAAQIEQVAGDIFDSLSENPAGIR 344
>gi|225023349|ref|ZP_03712541.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
gi|224943827|gb|EEG25036.1| hypothetical protein EIKCOROL_00207 [Eikenella corrodens ATCC
23834]
Length = 361
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++T T SAGIA NK LAK+AS KP Q +P + L +LP+ K+ +G K
Sbjct: 131 EILRQTGLTASAGIAPNKFLAKIASDWRKPNGQFVIPPPRIAQFLLTLPLGKIPGVGKK- 189
Query: 62 GTSLQ--NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 119
+LQ + LG+ T GDL K +L +G G L+++ARGI VQ +
Sbjct: 190 --TLQKMHALGLQTAGDLQKMQRGELVNLFG-RWGYRLYDLARGIDNRPVQPQRERLQIS 246
Query: 120 SGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + P L + V+H +L++ L + ++ + AHTLTL
Sbjct: 247 TEITLPQDLPLSKI--VRH-----LADLAKDLWAQAQRKQVQAHTLTL 287
>gi|71904218|ref|YP_281021.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
gi|123639299|sp|Q48RJ4.1|DPO4_STRPM RecName: Full=DNA polymerase IV; Short=Pol IV
gi|71803313|gb|AAX72666.1| DNA polymerase IV [Streptococcus pyogenes MGAS6180]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|383480538|ref|YP_005389432.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|383494519|ref|YP_005412195.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
gi|378928528|gb|AFC66734.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS15252]
gi|378930246|gb|AFC68663.1| DNA polymerase IV protein DinP [Streptococcus pyogenes MGAS1882]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|145502699|ref|XP_001437327.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404477|emb|CAK69930.1| unnamed protein product [Paramecium tetraurelia]
Length = 509
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 3/166 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V KET++ CSAGI+ NKML+KLAS NKP +QT + + + IKK++ GGK+
Sbjct: 186 VYKETQYKCSAGISFNKMLSKLASSTNKPNKQTIILECMLPECIAQFNIKKIRGFGGKIK 245
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S + T+G + S +L+ + + ++++ RG EEV+ + + H S
Sbjct: 246 HSFVKS-EIQTIGQAQQLSLSQLEMLFA-DKAQYVYDKLRGYDNEEVK-KDSERKHKSIL 302
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
S + + ++ L + +L+ R+ E + + + LH
Sbjct: 303 SLKNIKKTFSRDTINQSLELIIHDLTMRVTDYYEDSNLVPSVVVLH 348
>gi|387790872|ref|YP_006255937.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
gi|379653705|gb|AFD06761.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Solitalea canadensis DSM 3403]
Length = 366
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 1 MQVLK----ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQ 56
MQ+ K E T SAG++ NK +AK+AS +NKP T + S ++ ++SL ++K
Sbjct: 131 MQIKKAIKDELNLTASAGVSVNKFVAKIASDINKPDGLTFIGPSKIESFMESLAVEKFHG 190
Query: 57 LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPK 116
+ G++ + + T DL K +E++L +G G + + I RGI EVQ + K
Sbjct: 191 I-GRVTAEKMKRMNLFTGADLKKLTEEQLLLHFG-KPGKFYYKIVRGIDDREVQPNRVTK 248
Query: 117 SHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
S G+ +F P L + + L+++ + +++RL Q K TL + S FK
Sbjct: 249 SVGAEDTF--PYDLTDLEEMNVELDKIAKTVADRLQR--YQLKGRTLTLKIKYSDFK 301
>gi|303312081|ref|XP_003066052.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105714|gb|EER23907.1| ImpB/MucB/SamB family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 1128
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + AKLA KPA Q + +V + L ++++ + LG
Sbjct: 493 VKQKTGCDVSVGIGGNILQAKLALREAKPAGQFQLKPEAVLEFIGELTVQQLPGVAYSLG 552
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S ++L S G TG LW+ ARGI +V + P+ S +
Sbjct: 553 AKLE-ELGVKFVKDIRELSRERLTSSLGPKTGAKLWDYARGIDNADV-GDVAPRKSVSAE 610
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 611 INWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|50914926|ref|YP_060898.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|306826715|ref|ZP_07460017.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
gi|73620812|sp|Q5XA48.1|DPO4_STRP6 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|50904000|gb|AAT87715.1| DNA polymerase IV [Streptococcus pyogenes MGAS10394]
gi|304431004|gb|EFM34011.1| DNA-directed DNA polymerase IV [Streptococcus pyogenes ATCC 10782]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|313889773|ref|ZP_07823415.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|416852396|ref|ZP_11909541.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
gi|313121818|gb|EFR44915.1| DNA polymerase IV [Streptococcus pseudoporcinus SPIN 20026]
gi|356739885|gb|EHI65117.1| DNA polymerase IV [Streptococcus pseudoporcinus LQ 940-04]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T + + L+ LPI+K +G K
Sbjct: 145 KELHLTCSAGVSYNKFLAKLASDFEKPHGLTLILPDQAQPFLEKLPIEKFHGVGIKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +E+G+ DLL SE L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 205 L-HEMGIYNGKDLLGLSEMTLIDHFG-RFGFDLYRKARGISSSPVKPDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L T A V+ + + ++R+ S L+++ + + L
Sbjct: 263 --SKLLYTEADVKAEIAK----HAQRVVSTLDKSHKRGKIVIL 299
>gi|301093411|ref|XP_002997552.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110570|gb|EEY68622.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 525
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
+TCS GIA NK+LAKLAS +NKP Q V V L+ SLP++K++ LGGKLG L+
Sbjct: 178 YTCSTGIAGNKLLAKLASPLNKPNGQVVVASRFVIDLMKSLPMRKIRGLGGKLGKQLE-- 235
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
T G+ K KL ++ F L +A+ + G+E A + GS + P
Sbjct: 236 ----TAGESFK----KL-SAHTFLQRCGLIELAKHV-GQETAAYVHSICQGSDDNEPVEE 285
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
K V + LCEE+ R + +NKR L++
Sbjct: 286 --KKVQVKITGVRLLCEEVVIRCEDERIENKRFPSQLSI 322
>gi|189044612|sp|Q1JF59.1|DPO4_STRPD RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94544652|gb|ABF34700.1| DNA polymerase IV [Streptococcus pyogenes MGAS10270]
Length = 364
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|313892314|ref|ZP_07825907.1| putative DNA polymerase IV [Dialister microaerophilus UPII 345-E]
gi|313119452|gb|EFR42651.1| putative DNA polymerase IV [Dialister microaerophilus UPII 345-E]
Length = 409
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 9/179 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++ T S GIA NK LAK+AS MNKP T +P+ K + LP++ + +G
Sbjct: 129 EIKEKLHLTASVGIAPNKFLAKIASDMNKPDGLTIIPYGKEKETIAPLPVRALWGVGRVT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+L + G T+GD+ K + D+ + G N G L+ +A+G+ EV A PKS G
Sbjct: 189 EKTLLKQ-GYKTIGDIQKENYDRFCKKTG-NIGKNLYLLAQGVDNREVTAEQAPKSIGDE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
++ K ++ L C+ +++R L + K A T+TL F+S + +R
Sbjct: 247 TTYAYDIFEK--EDIERKLIIHCDIVAQR----LREKKMSARTITLRVR-FESFKTITR 298
>gi|289577475|ref|YP_003476102.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
gi|289527188|gb|ADD01540.1| DNA-directed DNA polymerase [Thermoanaerobacter italicus Ab9]
Length = 389
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T T SAG+++NK LAKLAS NKP T + + +L LP+ K+ +G K
Sbjct: 126 KVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIPDILKPLPVSKVYGIGEKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+ KS G
Sbjct: 186 EERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMREIKSIGKE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
K+ + K + H+ + +SE L
Sbjct: 244 KTL--EKDTKDKKLLLHYAKLFSDIISEEL 271
>gi|359318428|ref|XP_003432548.2| PREDICTED: DNA polymerase iota [Canis lupus familiaris]
Length = 763
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQN 67
T AG+A NK+LAKL SG+ KP QQT + S + L+ SL +K+M +G K L+
Sbjct: 240 LTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQVLIQSLNHVKEMPGIGYKTAKRLE- 298
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LG+++V DL FS L++ G + + ++ G V P+S SF
Sbjct: 299 ALGISSVYDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEEDSF--- 355
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
+ + V++ + +L L R+C Q+ R HT+ L + S + SR+ S+
Sbjct: 356 KKCSSEVEVKNKIEELLASLLNRVC----QDGRKPHTIRLIIRRYSSENHCSRE---SRQ 408
Query: 188 CPL 190
CP+
Sbjct: 409 CPI 411
>gi|357975695|ref|ZP_09139666.1| DNA-directed DNA polymerase [Sphingomonas sp. KC8]
Length = 361
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L ET T SAGI++NK LAK+AS NKP Q + + ++ LP+ + +G K
Sbjct: 133 RILAETGLTASAGISYNKFLAKIASDQNKPNGQCVITPAQGAAFIEHLPVGRFHGVGPKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N LG+ T DL + LQ+ +G G W I+RGI V KS GS
Sbjct: 193 AEKL-NRLGIFTGADLRRQELGWLQQHFG-KAGHWYHAISRGIDERAVVPDRPRKSSGSE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
++ L T A+V+ + + +E+
Sbjct: 251 TTY--SHDLTTPAAVEDGVRAMADEV 274
>gi|425107620|ref|ZP_18509892.1| DNA polymerase IV [Escherichia coli 6.0172]
gi|408561085|gb|EKK37328.1| DNA polymerase IV [Escherichia coli 6.0172]
Length = 312
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 91 IFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 149
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 150 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 208
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 209 TM--------AEDIHHWSE--CEAIIERLYPELERR 234
>gi|198245459|ref|YP_002214268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|200390906|ref|ZP_03217517.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|207855798|ref|YP_002242449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117745|ref|ZP_09762912.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|418845907|ref|ZP_13400684.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418860672|ref|ZP_13415247.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418864156|ref|ZP_13418691.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|421357900|ref|ZP_15808208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421365109|ref|ZP_15815331.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421369118|ref|ZP_15819302.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421372564|ref|ZP_15822713.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421376176|ref|ZP_15826285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421380746|ref|ZP_15830808.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421384111|ref|ZP_15834140.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421392611|ref|ZP_15842568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421395871|ref|ZP_15845803.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421398530|ref|ZP_15848435.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421405287|ref|ZP_15855122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421407887|ref|ZP_15857694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421414038|ref|ZP_15863784.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421419576|ref|ZP_15869268.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421423747|ref|ZP_15873398.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421425500|ref|ZP_15875135.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421429849|ref|ZP_15879443.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421437785|ref|ZP_15887299.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421440875|ref|ZP_15890350.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421445723|ref|ZP_15895144.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421451323|ref|ZP_15900689.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436635994|ref|ZP_20515843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|436793964|ref|ZP_20521938.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436810464|ref|ZP_20529502.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436813788|ref|ZP_20531976.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831512|ref|ZP_20536180.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436849648|ref|ZP_20540785.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436856061|ref|ZP_20545166.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436863047|ref|ZP_20549590.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436871522|ref|ZP_20554696.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436878673|ref|ZP_20559092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436886788|ref|ZP_20563194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436894544|ref|ZP_20568022.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436904671|ref|ZP_20574688.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909852|ref|ZP_20576437.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436918105|ref|ZP_20581276.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436925673|ref|ZP_20586105.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436934146|ref|ZP_20590150.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436941426|ref|ZP_20594986.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436949416|ref|ZP_20599430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436959531|ref|ZP_20603728.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436975250|ref|ZP_20611526.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436987057|ref|ZP_20615701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436999594|ref|ZP_20620167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437009914|ref|ZP_20623894.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437018290|ref|ZP_20626782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437035425|ref|ZP_20633351.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437046726|ref|ZP_20638542.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437049477|ref|ZP_20640097.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437056709|ref|ZP_20644077.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437065161|ref|ZP_20648846.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437079059|ref|ZP_20656553.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437082082|ref|ZP_20658157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437090106|ref|ZP_20662678.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437115035|ref|ZP_20669257.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437122676|ref|ZP_20672518.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437132779|ref|ZP_20678229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437137886|ref|ZP_20680681.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437149199|ref|ZP_20688072.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437151842|ref|ZP_20689513.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437160794|ref|ZP_20694867.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437169509|ref|ZP_20699829.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437176703|ref|ZP_20703507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437188110|ref|ZP_20710114.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437198466|ref|ZP_20711392.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437259572|ref|ZP_20717092.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437272583|ref|ZP_20724333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437276752|ref|ZP_20726566.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437288221|ref|ZP_20730555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437309658|ref|ZP_20735586.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437329016|ref|ZP_20741106.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338654|ref|ZP_20743859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437381049|ref|ZP_20750293.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437413030|ref|ZP_20753452.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437456141|ref|ZP_20760260.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437470138|ref|ZP_20765153.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437485143|ref|ZP_20769255.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437499181|ref|ZP_20773990.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437513661|ref|ZP_20777639.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437531189|ref|ZP_20780669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554615|ref|ZP_20784387.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437571560|ref|ZP_20788669.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437586130|ref|ZP_20793217.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437602499|ref|ZP_20798506.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437625841|ref|ZP_20805694.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437643106|ref|ZP_20808368.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437664518|ref|ZP_20814321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437675779|ref|ZP_20816847.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437687951|ref|ZP_20819620.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437710216|ref|ZP_20826321.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437726256|ref|ZP_20830061.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437754980|ref|ZP_20834157.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437802361|ref|ZP_20838326.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437907945|ref|ZP_20850084.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438076074|ref|ZP_20857333.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438090824|ref|ZP_20860653.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438105066|ref|ZP_20866132.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438114592|ref|ZP_20870208.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|445144062|ref|ZP_21386811.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445153608|ref|ZP_21391455.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445163964|ref|ZP_21393996.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445218195|ref|ZP_21402532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445219434|ref|ZP_21402735.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445298291|ref|ZP_21411325.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329323|ref|ZP_21413381.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445343659|ref|ZP_21417128.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445362434|ref|ZP_21424194.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|197939975|gb|ACH77308.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|199603351|gb|EDZ01897.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|206707601|emb|CAR31883.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|326622012|gb|EGE28357.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|392811909|gb|EJA67907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392826056|gb|EJA81789.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392831417|gb|EJA87050.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|395980620|gb|EJH89843.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395983413|gb|EJH92606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395990137|gb|EJH99269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|396000214|gb|EJI09229.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396003403|gb|EJI12391.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396003795|gb|EJI12782.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396008172|gb|EJI17107.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396010915|gb|EJI19826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396020673|gb|EJI29514.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396024598|gb|EJI33384.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396029819|gb|EJI38555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396030320|gb|EJI39054.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396035716|gb|EJI44388.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396035795|gb|EJI44466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396037132|gb|EJI45783.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396048747|gb|EJI57291.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396056771|gb|EJI65244.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396057166|gb|EJI65638.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396064078|gb|EJI72466.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396064158|gb|EJI72545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|396065814|gb|EJI74182.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|434958517|gb|ELL52066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22704]
gi|434962967|gb|ELL56109.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434964956|gb|ELL57919.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975296|gb|ELL67606.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982469|gb|ELL74292.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434988225|gb|ELL79824.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434991494|gb|ELL82982.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434997574|gb|ELL88813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435000737|gb|ELL91859.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435007349|gb|ELL98202.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435011320|gb|ELM02040.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017193|gb|ELM07701.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435018358|gb|ELM08833.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435028225|gb|ELM18304.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435030837|gb|ELM20826.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435040066|gb|ELM29835.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435041286|gb|ELM31028.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435045257|gb|ELM34902.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435050201|gb|ELM39706.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435054114|gb|ELM43550.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435054196|gb|ELM43631.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435059638|gb|ELM48913.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435060135|gb|ELM49405.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435066814|gb|ELM55885.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435074792|gb|ELM63615.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078196|gb|ELM66940.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435081882|gb|ELM70523.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435096227|gb|ELM84499.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435097015|gb|ELM85277.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435099809|gb|ELM88000.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435101415|gb|ELM89569.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111250|gb|ELM99155.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435115124|gb|ELN02914.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435115281|gb|ELN03052.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435122326|gb|ELN09848.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435123502|gb|ELN10995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435131008|gb|ELN18236.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435134520|gb|ELN21648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435143315|gb|ELN30181.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146307|gb|ELN33100.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435148368|gb|ELN35095.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435155428|gb|ELN41972.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435156030|gb|ELN42532.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435164960|gb|ELN51020.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435167915|gb|ELN53768.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435173593|gb|ELN59090.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435183621|gb|ELN68582.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435185148|gb|ELN70036.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435190547|gb|ELN75129.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435196045|gb|ELN80401.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435203065|gb|ELN86851.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435203148|gb|ELN86932.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435206848|gb|ELN90340.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435215023|gb|ELN97771.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435216318|gb|ELN98793.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435222316|gb|ELO04432.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435224104|gb|ELO06088.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435230298|gb|ELO11632.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435243491|gb|ELO23748.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435243913|gb|ELO24167.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435248013|gb|ELO27934.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435252608|gb|ELO32136.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435260187|gb|ELO39400.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435260401|gb|ELO39600.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435265646|gb|ELO44451.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435275141|gb|ELO53228.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435277393|gb|ELO55346.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282999|gb|ELO60595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435288989|gb|ELO65979.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435292206|gb|ELO68995.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435303719|gb|ELO79558.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435310147|gb|ELO84686.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|435310911|gb|ELO85232.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435316161|gb|ELO89352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435318755|gb|ELO91664.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435321675|gb|ELO94066.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435328991|gb|ELP00449.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|444847202|gb|ELX72352.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444852267|gb|ELX77348.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444856698|gb|ELX81724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444867633|gb|ELX92311.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444870975|gb|ELX95430.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444879083|gb|ELY03191.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444881463|gb|ELY05507.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444882093|gb|ELY06085.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|444884113|gb|ELY07957.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|258541348|ref|YP_003186781.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|384041269|ref|YP_005480013.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
gi|384049784|ref|YP_005476847.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|384052894|ref|YP_005485988.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|384056126|ref|YP_005488793.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|384058767|ref|YP_005497895.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|384062061|ref|YP_005482703.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|384118137|ref|YP_005500761.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632426|dbj|BAH98401.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01]
gi|256635483|dbj|BAI01452.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-03]
gi|256638538|dbj|BAI04500.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-07]
gi|256641592|dbj|BAI07547.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-22]
gi|256644647|dbj|BAI10595.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-26]
gi|256647702|dbj|BAI13643.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-32]
gi|256650755|dbj|BAI16689.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653746|dbj|BAI19673.1| DNA polymerase IV [Acetobacter pasteurianus IFO 3283-12]
Length = 359
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+ +G
Sbjct: 133 ILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAFHGVGPATA 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ T DL +FS D L++ +G + + IARG V+ KS G
Sbjct: 193 RRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRPRKSLGKEV 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEEL 147
+F + L+T A + L +L ++
Sbjct: 251 TF--EQDLRTPAELHAALRELASKV 273
>gi|414563270|ref|YP_006042231.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
gi|338846335|gb|AEJ24547.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus ATCC
35246]
Length = 367
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +E
Sbjct: 149 LTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-HE 207
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 208 MGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRIRKSISSERTY---- 262
Query: 129 ALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTLTL 167
A + + + ELS+ R+ LE NK++ + L
Sbjct: 263 -----AKLLYQEADIKAELSKNASRVADLLEANKKLGRIIVL 299
>gi|322831681|ref|YP_004211708.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|384256795|ref|YP_005400729.1| DNA polymerase IV [Rahnella aquatilis HX2]
gi|321166882|gb|ADW72581.1| DNA-directed DNA polymerase [Rahnella sp. Y9602]
gi|380752771|gb|AFE57162.1| DNA polymerase IV [Rahnella aquatilis HX2]
Length = 352
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IFDEINLTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ E G+ T GD+ ++ KL + +G G LW +GI E+ L KS G +
Sbjct: 190 QRLQ-EQGLITCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDEREISPERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAFKSSDSDSRK 181
+ + W + C L ERL +L+ R++ L + K D ++
Sbjct: 248 TL--------AEDIHSW--EECVSLIERLYPELQTRLSRVSPDLRIARQGVKLKFHDFQQ 297
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
P+ +ED + + + G GV+ G H +
Sbjct: 298 TTQEHVWPVLN-----KEDLLKVAREAWEQRRGGRGVRLVGLHVT 337
>gi|238793960|ref|ZP_04637579.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
gi|238726727|gb|EEQ18262.1| DNA polymerase IV [Yersinia intermedia ATCC 29909]
Length = 352
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + + ++ L LP+ K+ +G
Sbjct: 130 IFDELSLTASAGIAPIKFLAKIASDLNKPNGQYVITPNQIQPFLHDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ ELG+ T GD+ + + +L + +G G LW + GI E+ L KS G +
Sbjct: 190 KRLQ-ELGLVTCGDVQNYPQAELLKRFG-KFGHVLWERSHGIDEREISPDRLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ + W + CE L ++L +LE R
Sbjct: 248 TL--------AEDIHDW--ESCEALIDQLYIELETRLR 275
>gi|56414559|ref|YP_151634.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197363489|ref|YP_002143126.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|81599398|sp|Q5PF76.1|DPO4_SALPA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|56128816|gb|AAV78322.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197094966|emb|CAR60503.1| hypothetical protein DinP (DNA damage-inducible protein)
[Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|408789869|ref|ZP_11201510.1| DNA polymerase IV [Lactobacillus florum 2F]
gi|408520891|gb|EKK20913.1| DNA polymerase IV [Lactobacillus florum 2F]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T TCS GI++ K LAK AS KPA T + L LPI++ + +G +
Sbjct: 124 EIWEKTHLTCSTGISYCKFLAKEASDYQKPAGMTMISEQEALPFLKRLPIQRFRGVGKQT 183
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ +LG+ T DL + SE L +G G L+ RGI V + L KS G
Sbjct: 184 SIKME-QLGIKTGADLYQLSEALLINQFG-KLGYILYRRVRGIDDRPVIGQRLRKSLGKE 241
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F L ++++Q L++L +E +CS L++++ TL L
Sbjct: 242 ETF--RHFLTELSAMQTVLSRLAKE----VCSGLQKSQLHGKTLVL 281
>gi|295132163|ref|YP_003582839.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
gi|294980178|gb|ADF50643.1| DNA polymerase IV 2 [Zunongwangia profunda SM-A87]
Length = 354
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ++T SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K + GK+
Sbjct: 120 KIKQKTGLNASAGISVNKFIAKVASDINKPNGQKTVNPEEVLDFLEQLEIRKFYGV-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG+ T DL SE L + +G G + +N+ RGI EV+ + KS G+
Sbjct: 179 TAEKMYRLGIFTGKDLKSKSEAYLADHFG-KHGPYYYNVVRGIHESEVKPNRMRKSLGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + ++S L +L ++E + L+++K T+TL
Sbjct: 238 RTFS-----ENISSEIFMLEKLT-NIAEEIERRLQKSKVAGKTVTL 277
>gi|297543787|ref|YP_003676089.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296841562|gb|ADH60078.1| DNA-directed DNA polymerase [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 389
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T T SAG+++NK LAKLAS NKP T + + +L LP+ K+ +G K
Sbjct: 126 KVKETTGLTISAGVSYNKFLAKLASDWNKPDGFTVITEDMIPDILKPLPVSKVYGIGEKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+ KS G
Sbjct: 186 EERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMREIKSIGKE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
K+ + K + H+ + +SE L
Sbjct: 244 KTL--EKDTKDKKLLLHYAKLFSDIISEEL 271
>gi|384263521|ref|YP_005418710.1| Nucleotidyltransferase/DNA polymerase [Rhodospirillum photometricum
DSM 122]
gi|378404624|emb|CCG09740.1| Nucleotidyltransferase/DNA polymerase [Rhodospirillum photometricum
DSM 122]
Length = 349
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T SAGI++ K LAK+AS +NKP Q +P + + LP+KK +G
Sbjct: 144 RIREVTGLNASAGISYCKFLAKMASDLNKPNGQAVIPPARGPQFVAQLPVKKFHGIGPAT 203
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+++ LG+ T DL S + L+ +G +G W + I+RGI V+ KS G+
Sbjct: 204 AAKMEH-LGILTGADLRAHSIEFLRAHFG-KSGGWYYQISRGIDDRPVEPHRERKSIGAE 261
Query: 122 KSFP 125
+FP
Sbjct: 262 DTFP 265
>gi|416568092|ref|ZP_11764531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363578194|gb|EHL62010.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|417516172|ref|ZP_12179116.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654837|gb|EHC96017.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 343
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 122 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 181
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 182 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 239
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 240 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 269
>gi|409044729|gb|EKM54210.1| hypothetical protein PHACADRAFT_145933 [Phanerochaete carnosa
HHB-10118-sp]
Length = 589
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGK 60
V +ET+ T SAGIA NK+LAK+ S NKP Q + F ++VK + L I+K+ + G+
Sbjct: 227 VFRETKLTVSAGIAPNKVLAKICSDRNKPNGQFALDFTPAAVKAFMHDLSIRKIPGV-GR 285
Query: 61 LGTSLQNELGVTTVGDLL--KFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 118
+ L + +G+ T GD+ + + + + +G + +L GI+ VQ P
Sbjct: 286 VNERLLDSVGIQTCGDIYTHRATLALMDKYFGLH---FLLQTYLGIASNVVQ----PGQR 338
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS R T++S + L +L EE++ L DLE+ T+TL
Sbjct: 339 EERKSIGAERTFHTISSKEDILRKL-EEVAAELNEDLERTGWTGKTVTL 386
>gi|421850035|ref|ZP_16283004.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
gi|371459135|dbj|GAB28207.1| DNA polymerase IV [Acetobacter pasteurianus NBRC 101655]
Length = 360
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ET T SAG+++NK LAKLAS KP Q +P + + + SLP+ +G
Sbjct: 134 ILRETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEDFVASLPVNAFHGVGPATA 193
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ T DL +FS D L++ +G + + IARG V+ KS G
Sbjct: 194 RRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRPRKSLGKEV 251
Query: 123 SFPGPRALKTVASVQHWLNQLCEEL 147
+F + L+T A + L +L ++
Sbjct: 252 TF--EQDLRTPAELHAALRELASKV 274
>gi|430840671|ref|ZP_19458594.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|431741951|ref|ZP_19530850.1| DNA polymerase IV [Enterococcus faecium E2039]
gi|430494877|gb|ELA71095.1| DNA polymerase IV [Enterococcus faecium E1007]
gi|430600799|gb|ELB38426.1| DNA polymerase IV [Enterococcus faecium E2039]
Length = 373
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|293572065|ref|ZP_06683076.1| DNA polymerase IV [Enterococcus faecium E980]
gi|291607850|gb|EFF37161.1| DNA polymerase IV [Enterococcus faecium E980]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 144 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 203
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 204 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 261
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 262 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 288
>gi|222149470|ref|YP_002550427.1| DNA polymerase IV [Agrobacterium vitis S4]
gi|221736453|gb|ACM37416.1| DNA-damage-inducible protein [Agrobacterium vitis S4]
Length = 385
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T SAGI++NK LAK+AS +NKP Q + + G +++LP+K+ +G +Q
Sbjct: 164 TGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPGFVEALPVKRFHGVGPATAERMQ 223
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
G+ T DL S LQ +G +G++ + IARGI +V+A + KS G+ +F
Sbjct: 224 RH-GIETGLDLKSKSLQFLQTHFG-KSGSYFYGIARGIDERQVRADRIRKSVGAEDTF 279
>gi|194442660|ref|YP_002039555.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|238913297|ref|ZP_04657134.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|418807468|ref|ZP_13363026.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418812007|ref|ZP_13367531.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418815365|ref|ZP_13370866.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418821453|ref|ZP_13376878.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418831645|ref|ZP_13386595.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835646|ref|ZP_13390537.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418838629|ref|ZP_13393471.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418848833|ref|ZP_13403568.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418854945|ref|ZP_13409608.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|194401323|gb|ACF61545.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|392776747|gb|EJA33433.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392778731|gb|EJA35402.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392791048|gb|EJA47541.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392791817|gb|EJA48285.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392798542|gb|EJA54813.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392802921|gb|EJA59122.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392814455|gb|EJA70406.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392822180|gb|EJA77992.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392823119|gb|EJA78922.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|431751229|ref|ZP_19539921.1| DNA polymerase IV [Enterococcus faecium E2620]
gi|430615883|gb|ELB52821.1| DNA polymerase IV [Enterococcus faecium E2620]
Length = 373
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKTLPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMTLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|227503298|ref|ZP_03933347.1| DNA polymerase IV [Corynebacterium accolens ATCC 49725]
gi|227075801|gb|EEI13764.1| DNA polymerase IV [Corynebacterium accolens ATCC 49725]
Length = 493
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 17/226 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET CS G K AK+ SG KP +P +L LP+ K+ +G
Sbjct: 164 IREETGLPCSIGAGSGKQFAKIGSGEAKPDGTYVIPADKQLEMLHPLPVGKLWGVGPVTE 223
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ +GV T+G L ++ +++ S G G LW +A+GI EV R + K +
Sbjct: 224 AKLKG-IGVETIGALAAMTQKEVEISIGSVVGLQLWQLAQGIDDREVAPRAISKQISTEH 282
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P+ L TV V + + E RL D R A T+T+ + +D
Sbjct: 283 TY--PKDLLTVPDVDAAITRAAEGAHRRLLKD----GRGARTVTVK---LRMADF----H 329
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 227
S+S L Y T ++ T F+ L + G ++ G YSG
Sbjct: 330 IESRSTTLAYATDDLEVLTAAAFK--LARYPDELGPIRLVGVSYSG 373
>gi|168056469|ref|XP_001780242.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668296|gb|EDQ54906.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1843
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 107/253 (42%), Gaps = 23/253 (9%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ + T T SAG++ NK+LA+LA+ KP + S V+G +D L ++ + +G L
Sbjct: 675 QIFEATRCTASAGVSKNKLLARLATRKAKPNGLYYIAPSEVEGFMDELAVEDLPGVGWTL 734
Query: 62 GTSLQNELGVTTVGDLLKFS--------------EDKLQESYGFNTGTWLWNIARGISGE 107
L++ + DLL+ S +D LQ +G TG LW+ ARGI
Sbjct: 735 KEKLKSH-NLHKCSDLLRVSKHYNVAEIKFVSLRQDFLQREFGVKTGDMLWSYARGIDTR 793
Query: 108 EVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
EVQ + KS G+ ++ G R L +L L E++ RL + + + T+TL
Sbjct: 794 EVQQAQIRKSIGAEVNW-GVRFL-VPEDAHRFLVTLSTEVATRLQTAAVKGR----TITL 847
Query: 168 HASAFKSSDSDSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY 225
K + K C R T D+ + ++ SF +
Sbjct: 848 KVKRRKEGSGEPSKFMGCGVCDNFSRSETVGYATDSQEILLRVAKQLFNSFAFDVRDVRG 907
Query: 226 SGWRITALSVSAS 238
G ++T L S
Sbjct: 908 VGLQVTRLEAVGS 920
>gi|406590293|ref|ZP_11064662.1| DNA polymerase IV [Enterococcus sp. GMD1E]
gi|404469362|gb|EKA14168.1| DNA polymerase IV [Enterococcus sp. GMD1E]
Length = 372
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|258405893|ref|YP_003198635.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
gi|257798120|gb|ACV69057.1| DNA-directed DNA polymerase [Desulfohalobium retbaense DSM 5692]
Length = 397
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T + S GIA NK +AK+AS +KP T + ++ LD LP++K+ +G + ++L
Sbjct: 133 TGLSASIGIAPNKFVAKIASDWDKPGGLTWIRAEQLQTFLDKLPVRKLPGVGPRT-SALL 191
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
LGV +VG + +FSE + G G LW A GI EVQ PKS G+ +
Sbjct: 192 ERLGVESVGAVRRFSEAFWTDRLG-EGGKQLWARAHGIDDSEVQPYHAPKSCGAEHTL-- 248
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
P+ + A + WL L E +ER+ +L + A T+TL
Sbjct: 249 PQDTEDEAILISWL--LHE--AERIGRELRREVMEAGTVTL 285
>gi|168819096|ref|ZP_02831096.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|409248740|ref|YP_006884580.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|205343975|gb|EDZ30739.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|320084568|emb|CBY94360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 351
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|427400155|ref|ZP_18891393.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
gi|425720895|gb|EKU83810.1| hypothetical protein HMPREF9710_00989 [Massilia timonae CCUG 45783]
Length = 341
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T SAG+A NK +AK+AS NKP V V + +LP+KK+ + GK+
Sbjct: 112 RIFETVGITASAGVAPNKFVAKIASDWNKPDGLFLVRPDEVDAFVAALPVKKLHGV-GKV 170
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 109
N LG+ T DL +S D+LQE +G + G L++++RGI EV
Sbjct: 171 TAEKMNRLGLQTCADLRAWSMDQLQEHFG-SFGARLYDLSRGIDHREV 217
>gi|320040029|gb|EFW21963.1| DNA polymerase 4 [Coccidioides posadasii str. Silveira]
Length = 1128
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + AKLA KPA Q + +V + L ++++ + LG
Sbjct: 493 VKQKTGCDVSVGIGGNILQAKLALREAKPAGQFQLKPEAVLEFIGELTVQQLPGVACSLG 552
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S ++L S G TG LW+ ARGI +V + P+ S +
Sbjct: 553 AKLE-ELGVKFVKDIRELSRERLTSSLGPKTGAKLWDYARGIDNADV-GDVAPRKSVSAE 610
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 611 INWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|227550409|ref|ZP_03980458.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|293379604|ref|ZP_06625741.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|431758358|ref|ZP_19546985.1| DNA polymerase IV [Enterococcus faecium E3083]
gi|227180468|gb|EEI61440.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
gi|292641753|gb|EFF59926.1| DNA polymerase IV [Enterococcus faecium PC4.1]
gi|430617416|gb|ELB54289.1| DNA polymerase IV [Enterococcus faecium E3083]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKTLPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMTLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|149277809|ref|ZP_01883949.1| putative DNA polymerase [Pedobacter sp. BAL39]
gi|149231497|gb|EDM36876.1| putative DNA polymerase [Pedobacter sp. BAL39]
Length = 365
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 11/186 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG++ NK +AK+AS M+KP T + S ++ ++ LP++K + GK+
Sbjct: 142 ELNLTASAGVSINKFVAKVASDMDKPDGLTFIGPSKIERFIEQLPVEKFHGV-GKVTAEK 200
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
G+ DL K +E +L +G +G + + I RGI VQA KS G+ +F
Sbjct: 201 MKIRGLHKGADLKKLTEGELVHLFG-KSGHFFYKIVRGIDHRPVQANQETKSIGAEDTFS 259
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 185
L T + +LC +++ +C+ +EQ++ TLT+ K SD + S
Sbjct: 260 EDLELLTEMN-----EELC-KIAGTVCNRMEQHRLYGRTLTI---KIKFSDFKQITRSRS 310
Query: 186 KSCPLR 191
S P+R
Sbjct: 311 FSEPIR 316
>gi|418825347|ref|ZP_13380648.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
gi|392815769|gb|EJA71702.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22462]
Length = 339
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 118 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 177
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 178 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 235
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 236 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 265
>gi|168465387|ref|ZP_02699269.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|418763352|ref|ZP_13319476.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418766861|ref|ZP_13322933.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418772033|ref|ZP_13328039.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418774716|ref|ZP_13330677.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418781329|ref|ZP_13337214.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418784793|ref|ZP_13340630.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418804608|ref|ZP_13360212.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|419789054|ref|ZP_14314737.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419794108|ref|ZP_14319724.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|195631947|gb|EDX50467.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|392616198|gb|EIW98633.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392616520|gb|EIW98953.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392733608|gb|EIZ90810.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392734596|gb|EIZ91778.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736872|gb|EIZ94034.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392748056|gb|EJA05047.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392749916|gb|EJA06892.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392754324|gb|EJA11243.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392769637|gb|EJA26366.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
Length = 351
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|431099276|ref|ZP_19496442.1| DNA polymerase IV [Enterococcus faecium E1613]
gi|430570777|gb|ELB09716.1| DNA polymerase IV [Enterococcus faecium E1613]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|424762996|ref|ZP_18190475.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|431763831|ref|ZP_19552379.1| DNA polymerase IV [Enterococcus faecium E3548]
gi|402423596|gb|EJV55806.1| putative DNA polymerase IV [Enterococcus faecium TX1337RF]
gi|430621655|gb|ELB58407.1| DNA polymerase IV [Enterococcus faecium E3548]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKTLPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|417339507|ref|ZP_12121054.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
gi|357960280|gb|EHJ84177.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Baildon str. R6-199]
Length = 356
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 135 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 194
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 195 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 252
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 253 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|257888438|ref|ZP_05668091.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257899185|ref|ZP_05678838.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|431049963|ref|ZP_19493323.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|431065032|ref|ZP_19493855.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|431594896|ref|ZP_19522002.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|431738337|ref|ZP_19527282.1| DNA polymerase IV [Enterococcus faecium E1972]
gi|257824492|gb|EEV51424.1| DNA directed DNA polymerase [Enterococcus faecium 1,141,733]
gi|257837097|gb|EEV62171.1| DNA directed DNA polymerase [Enterococcus faecium Com15]
gi|430560372|gb|ELA99669.1| DNA polymerase IV [Enterococcus faecium E1590]
gi|430568652|gb|ELB07691.1| DNA polymerase IV [Enterococcus faecium E1604]
gi|430590822|gb|ELB28868.1| DNA polymerase IV [Enterococcus faecium E1861]
gi|430597775|gb|ELB35558.1| DNA polymerase IV [Enterococcus faecium E1972]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|269214646|ref|ZP_05986970.2| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
gi|269209306|gb|EEZ75761.1| DNA-directed DNA polymerase [Neisseria lactamica ATCC 23970]
Length = 368
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 147 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 205
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 206 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 253
>gi|62178884|ref|YP_215301.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224582154|ref|YP_002635952.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113190|ref|ZP_09758360.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|75484717|sp|Q57SU1.1|DPO4_SALCH RecName: Full=DNA polymerase IV; Short=Pol IV
gi|62126517|gb|AAX64220.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|224466681|gb|ACN44511.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713336|gb|EFZ04907.1| DNA polymerase IV [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
Length = 351
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|385784018|ref|YP_005760191.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|418413694|ref|ZP_12986910.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
gi|339894274|emb|CCB53543.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis N920143]
gi|410877332|gb|EKS25224.1| DNA polymerase IV [Staphylococcus lugdunensis ACS-027-V-Sch2]
Length = 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 IYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +L +G G L+N ARGI V++ + KS G+ +
Sbjct: 191 EKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
+F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 250 TFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|257897187|ref|ZP_05676840.1| DNA damage inducible protein P, partial [Enterococcus faecium
Com12]
gi|257833752|gb|EEV60173.1| DNA damage inducible protein P [Enterococcus faecium Com12]
Length = 371
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 147 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKTLPIEKFHGVGKKTV 206
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL + +E L ++G G L+ RGI V KS G
Sbjct: 207 PRM-HELGIYTGKDLYECTEMTLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 264
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 265 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 291
>gi|410030700|ref|ZP_11280530.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Marinilabilia sp. AK2]
Length = 358
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K + GK+
Sbjct: 131 RIKEEVGLNASAGISYNKFLAKTASDINKPNGQAVILPKEAEAFLEKLPIEKFFGI-GKV 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+G+ DL +FS L + +G +G +NI RGI EVQ + KS +
Sbjct: 190 TAEKMKSIGIHNGHDLKQFSLQYLTKKFG-KSGLHFFNIVRGIHLSEVQPNRIRKSLSAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F + L S + L ++ EEL R+
Sbjct: 249 NTF--EKDLSDRVSFEAALLEIFEELKRRI 276
>gi|69246405|ref|ZP_00603927.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|406580418|ref|ZP_11055611.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|406582747|ref|ZP_11057845.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|406584910|ref|ZP_11059906.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410936970|ref|ZP_11368832.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430824014|ref|ZP_19442581.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430844890|ref|ZP_19462787.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430846835|ref|ZP_19464689.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430851098|ref|ZP_19468853.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430856102|ref|ZP_19473806.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|431237138|ref|ZP_19503281.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|431264073|ref|ZP_19505961.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|431382817|ref|ZP_19511410.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|431522829|ref|ZP_19516778.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|431536394|ref|ZP_19517354.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|431701816|ref|ZP_19524925.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|431744892|ref|ZP_19533757.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|431779259|ref|ZP_19567455.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|447913406|ref|YP_007394818.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
gi|68195277|gb|EAN09729.1| DNA-directed DNA polymerase [Enterococcus faecium DO]
gi|404453795|gb|EKA00827.1| DNA polymerase IV [Enterococcus sp. GMD4E]
gi|404457737|gb|EKA04267.1| DNA polymerase IV [Enterococcus sp. GMD3E]
gi|404463129|gb|EKA08825.1| DNA polymerase IV [Enterococcus sp. GMD2E]
gi|410734563|gb|EKQ76482.1| DNA-directed DNA polymerase IV [Enterococcus sp. GMD5E]
gi|430441398|gb|ELA51495.1| DNA polymerase IV [Enterococcus faecium E0120]
gi|430496321|gb|ELA72426.1| DNA polymerase IV [Enterococcus faecium E1050]
gi|430534502|gb|ELA74946.1| DNA polymerase IV [Enterococcus faecium E1185]
gi|430538389|gb|ELA78681.1| DNA polymerase IV [Enterococcus faecium E1133]
gi|430545391|gb|ELA85365.1| DNA polymerase IV [Enterococcus faecium E1392]
gi|430572702|gb|ELB11552.1| DNA polymerase IV [Enterococcus faecium E1622]
gi|430576509|gb|ELB15160.1| DNA polymerase IV [Enterococcus faecium E1623]
gi|430581188|gb|ELB19635.1| DNA polymerase IV [Enterococcus faecium E1627]
gi|430585011|gb|ELB23320.1| DNA polymerase IV [Enterococcus faecium E1634]
gi|430594881|gb|ELB32833.1| DNA polymerase IV [Enterococcus faecium E1731]
gi|430597101|gb|ELB34905.1| DNA polymerase IV [Enterococcus faecium E1904]
gi|430604817|gb|ELB42247.1| DNA polymerase IV [Enterococcus faecium E2071]
gi|430642524|gb|ELB78301.1| DNA polymerase IV [Enterococcus faecium E4389]
gi|445189115|gb|AGE30757.1| DNA polymerase IV [Enterococcus faecium NRRL B-2354]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|430853560|ref|ZP_19471288.1| DNA polymerase IV [Enterococcus faecium E1258]
gi|430540641|gb|ELA80843.1| DNA polymerase IV [Enterococcus faecium E1258]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|342904369|ref|ZP_08726170.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
gi|341953609|gb|EGT80113.1| DNA polymerase IV [Haemophilus haemolyticus M21621]
Length = 355
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAG+A K LAK+AS MNKP Q + + V + +LP+ K+ + GK+
Sbjct: 133 IFDELNLTASAGVAPLKFLAKIASDMNKPNGQFVIKPNEVSEFIKTLPLNKIPGV-GKVT 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++G+ T D+ F + L +G G +W+ + GI EVQA KS G +
Sbjct: 192 SQRLLDMGLETCADIQNFDQIVLLNQFG-KAGKRIWDFSHGIDDREVQAHRERKSVGVEQ 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
+ + T+ LN L +EL RL
Sbjct: 251 TL--IENIHTIEQASALLNNLYQELIRRL 277
>gi|315660146|ref|ZP_07913003.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
gi|315494827|gb|EFU83165.1| DNA-directed DNA polymerase IV [Staphylococcus lugdunensis M23590]
Length = 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 IYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +L +G G L+N ARGI V++ + KS G+ +
Sbjct: 191 EKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
+F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 250 TFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|163856930|ref|YP_001631228.1| DNA polymerase IV [Bordetella petrii DSM 12804]
gi|163260658|emb|CAP42960.1| DNA polymerase IV [Bordetella petrii]
Length = 371
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ET T SAG+A NK LAK+AS +KP + + V L LP++K+ +G +
Sbjct: 132 EILQETRLTASAGVAPNKFLAKIASDWDKPDGLFVIKPAQVLAFLQPLPVRKVPGVGKVM 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
L+ LGV TVGDL + + +L+ +G G L +++GI EVQ
Sbjct: 192 QARLE-ALGVHTVGDLARHTAVELEHHFG-RYGIRLHELSQGIDRREVQ 238
>gi|254302957|ref|ZP_04970315.1| DNA-directed DNA polymerase III kappa subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
gi|148323149|gb|EDK88399.1| DNA-directed DNA polymerase III kappa subunit [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 351
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 11/196 (5%)
Query: 2 QVLKE-TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQL--- 57
Q +KE T TCS GI NK+ AK+AS +NKP F + + + + KK+K +
Sbjct: 123 QRIKELTNLTCSVGIGFNKLSAKIASDINKPF--GFFIFKNEEEFIKHISDKKIKIIPGV 180
Query: 58 GGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKS 117
G K L+N+ + V D+ K+S D L + YG + G L+ RGI +EV+ + S
Sbjct: 181 GKKFFEILKND-NIFYVKDVFKYSLDYLVKKYGKSRGENLYCSVRGIDFDEVEYQKEIHS 239
Query: 118 HGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 177
G+ ++F P L+ + + N L E ERL + + + T+ + ++FK+
Sbjct: 240 IGNEETFLIP--LQNNSEIIREFNSLFEYTFERLIKNNVFTQSV--TIKMRYTSFKTYTK 295
Query: 178 DSRKKFPSKSCPLRYG 193
+ KF ++S Y
Sbjct: 296 SKKLKFSTRSKDFIYN 311
>gi|94989203|ref|YP_597304.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94993090|ref|YP_601189.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|417856180|ref|ZP_12501239.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
gi|189044610|sp|Q1JA16.1|DPO4_STRPB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|189044611|sp|Q1JK63.1|DPO4_STRPC RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94542711|gb|ABF32760.1| DNA polymerase IV [Streptococcus pyogenes MGAS9429]
gi|94546598|gb|ABF36645.1| DNA polymerase IV [Streptococcus pyogenes MGAS2096]
gi|387933135|gb|EIK41248.1| DNA polymerase IV [Streptococcus pyogenes HKU QMH11M0907901]
Length = 364
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>gi|340617508|ref|YP_004735961.1| DNA polymerase IV [Zobellia galactanivorans]
gi|339732305|emb|CAZ95573.1| DNA polymerase IV [Zobellia galactanivorans]
Length = 366
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 4/141 (2%)
Query: 11 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 70
SAGI+ NK +AK+AS +NKP Q TV V L+ L I+K + GK+ +LG
Sbjct: 143 ASAGISINKFIAKVASDINKPNGQKTVNPEEVSLFLEELEIRKFYGV-GKVTAEKMYKLG 201
Query: 71 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 130
+ T DL + + L+ ++G N G++ +N+ RGI V+ +PKS G+ ++F L
Sbjct: 202 IFTGKDLKLKTLEFLEGNFGKN-GSYYYNVVRGIHTSPVKPHRIPKSVGAERTF--NENL 258
Query: 131 KTVASVQHWLNQLCEELSERL 151
+ + L+ + EEL +RL
Sbjct: 259 SSEIFMLERLDHIAEELEKRL 279
>gi|325103858|ref|YP_004273512.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
gi|324972706|gb|ADY51690.1| DNA-directed DNA polymerase [Pedobacter saltans DSM 12145]
Length = 366
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E + T SAGI+ +K +AK+AS KP T + S + +++LPI+K + GK+
Sbjct: 137 EIKDELDLTASAGISTSKFIAKIASDFQKPDGLTFIGPSKIVPFIEALPIEKFFGV-GKV 195
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +LG+ DL K+ ++ L + +G +G + + I RGI V+ + KS G+
Sbjct: 196 TAAKMKKLGIFNGADLKKWKQNDLTKQFG-KSGKFFYEIVRGIDNRSVKPNRISKSVGAE 254
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + ++ LN+ ++LSER+ L + T+TL
Sbjct: 255 DTFEN-----DIDDIE-ILNEELQKLSERVSRRLNDKEFKGKTMTL 294
>gi|15675671|ref|NP_269845.1| DNA polymerase IV [Streptococcus pyogenes SF370]
gi|22095631|sp|Q99Y66.1|DPO4_STRP1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|13622885|gb|AAK34566.1| putative DNA-damage-inducible protein P [Streptococcus pyogenes M1
GAS]
Length = 364
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVKK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKYDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVL 299
>gi|417363626|ref|ZP_12136788.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|417404428|ref|ZP_12157699.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353599778|gb|EHC55865.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|353628510|gb|EHC76549.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 356
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V G L +LP+ K+ +G
Sbjct: 135 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPGFLKTLPLAKIPGVGKVSA 194
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 195 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 252
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 253 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 282
>gi|257879319|ref|ZP_05658972.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257881865|ref|ZP_05661518.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257890145|ref|ZP_05669798.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257893473|ref|ZP_05673126.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260558761|ref|ZP_05830950.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|261207356|ref|ZP_05922043.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289566863|ref|ZP_06447272.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|293559579|ref|ZP_06676113.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|293567574|ref|ZP_06678918.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|294615737|ref|ZP_06695587.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|294617662|ref|ZP_06697289.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|314937919|ref|ZP_07845235.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|314941410|ref|ZP_07848303.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|314948535|ref|ZP_07851915.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|314951290|ref|ZP_07854344.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|314992879|ref|ZP_07858280.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|314998083|ref|ZP_07862971.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|383328038|ref|YP_005353922.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|389867928|ref|YP_006375351.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|415894551|ref|ZP_11550362.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|416141894|ref|ZP_11599495.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|424790843|ref|ZP_18217351.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|424812972|ref|ZP_18238210.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|424827112|ref|ZP_18251927.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|424862493|ref|ZP_18286434.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|424901209|ref|ZP_18324746.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|424951499|ref|ZP_18366589.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|424952391|ref|ZP_18367416.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|424956586|ref|ZP_18371357.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|424961921|ref|ZP_18376320.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|424964118|ref|ZP_18378259.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|424968420|ref|ZP_18382044.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|424969912|ref|ZP_18383457.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|424973275|ref|ZP_18386563.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|424978170|ref|ZP_18391116.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|424982026|ref|ZP_18394709.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|424984626|ref|ZP_18397153.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|424986313|ref|ZP_18398740.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|424990169|ref|ZP_18402393.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|424994773|ref|ZP_18406698.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|424999062|ref|ZP_18410709.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|425005449|ref|ZP_18416691.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|425007823|ref|ZP_18418938.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|425009707|ref|ZP_18420701.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|425014480|ref|ZP_18425154.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|425019387|ref|ZP_18429755.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|425019621|ref|ZP_18429969.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|425023820|ref|ZP_18433915.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|425031184|ref|ZP_18436327.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|425036572|ref|ZP_18441314.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|425039062|ref|ZP_18443629.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|425043158|ref|ZP_18447421.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|425045520|ref|ZP_18449619.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|425048658|ref|ZP_18452549.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|425051519|ref|ZP_18455183.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|425061120|ref|ZP_18464385.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|427395461|ref|ZP_18888383.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430831485|ref|ZP_19449536.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430862315|ref|ZP_19479632.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430867327|ref|ZP_19482321.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430963227|ref|ZP_19487519.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|431011146|ref|ZP_19489890.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|431290485|ref|ZP_19506620.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|431747928|ref|ZP_19536692.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|431754045|ref|ZP_19542710.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|431768728|ref|ZP_19557161.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|431770023|ref|ZP_19558426.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|431774449|ref|ZP_19562757.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|431776996|ref|ZP_19565253.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|431781303|ref|ZP_19569451.1| DNA polymerase IV [Enterococcus faecium E6012]
gi|431784934|ref|ZP_19572969.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|257813547|gb|EEV42305.1| DNA directed DNA polymerase [Enterococcus faecium 1,230,933]
gi|257817523|gb|EEV44851.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,502]
gi|257826505|gb|EEV53131.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,410]
gi|257829852|gb|EEV56459.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,408]
gi|260075220|gb|EEW63533.1| DNA directed DNA polymerase [Enterococcus faecium C68]
gi|260078416|gb|EEW66120.1| DNA directed DNA polymerase [Enterococcus faecium TC 6]
gi|289161351|gb|EFD09242.1| DNA polymerase IV [Enterococcus faecium D344SRF]
gi|291589675|gb|EFF21479.1| DNA-damage-inducible protein P [Enterococcus faecium E1071]
gi|291591388|gb|EFF23047.1| DNA-damage-inducible protein P [Enterococcus faecium E1636]
gi|291596069|gb|EFF27335.1| DNA-damage-inducible protein P [Enterococcus faecium E1679]
gi|291606455|gb|EFF35855.1| DNA-damage-inducible protein P [Enterococcus faecium E1162]
gi|313587925|gb|EFR66770.1| DNA polymerase IV [Enterococcus faecium TX0133a01]
gi|313592683|gb|EFR71528.1| DNA polymerase IV [Enterococcus faecium TX0133B]
gi|313596507|gb|EFR75352.1| DNA polymerase IV [Enterococcus faecium TX0133A]
gi|313599833|gb|EFR78676.1| DNA polymerase IV [Enterococcus faecium TX0133C]
gi|313642777|gb|EFS07357.1| DNA polymerase IV [Enterococcus faecium TX0133a04]
gi|313645032|gb|EFS09612.1| DNA polymerase IV [Enterococcus faecium TX0082]
gi|364089914|gb|EHM32556.1| DNA-damage-inducible protein P [Enterococcus faecium E4452]
gi|364092131|gb|EHM34531.1| DNA-damage-inducible protein P [Enterococcus faecium E4453]
gi|378937732|gb|AFC62804.1| DNA polymerase IV [Enterococcus faecium Aus0004]
gi|388533177|gb|AFK58369.1| DNA-directed DNA polymerase IV [Enterococcus faecium DO]
gi|402916579|gb|EJX37434.1| putative DNA polymerase IV [Enterococcus faecium S447]
gi|402920398|gb|EJX40916.1| putative DNA polymerase IV [Enterococcus faecium V689]
gi|402923556|gb|EJX43839.1| putative DNA polymerase IV [Enterococcus faecium R501]
gi|402925523|gb|EJX45657.1| putative DNA polymerase IV [Enterococcus faecium R499]
gi|402929819|gb|EJX49540.1| putative DNA polymerase IV [Enterococcus faecium R496]
gi|402931190|gb|EJX50781.1| putative DNA polymerase IV [Enterococcus faecium R497]
gi|402941404|gb|EJX60134.1| putative DNA polymerase IV [Enterococcus faecium R494]
gi|402942144|gb|EJX60773.1| putative DNA polymerase IV [Enterococcus faecium P1986]
gi|402945696|gb|EJX64030.1| putative DNA polymerase IV [Enterococcus faecium R446]
gi|402947532|gb|EJX65740.1| putative DNA polymerase IV [Enterococcus faecium P1190]
gi|402952036|gb|EJX69896.1| putative DNA polymerase IV [Enterococcus faecium P1140]
gi|402958911|gb|EJX76192.1| putative DNA polymerase IV [Enterococcus faecium P1137]
gi|402961782|gb|EJX78777.1| putative DNA polymerase IV [Enterococcus faecium ERV99]
gi|402962996|gb|EJX79896.1| putative DNA polymerase IV [Enterococcus faecium P1123]
gi|402963083|gb|EJX79977.1| putative DNA polymerase IV [Enterococcus faecium P1139]
gi|402968385|gb|EJX84868.1| putative DNA polymerase IV [Enterococcus faecium ERV69]
gi|402976878|gb|EJX92731.1| putative DNA polymerase IV [Enterococcus faecium ERV38]
gi|402979166|gb|EJX94849.1| putative DNA polymerase IV [Enterococcus faecium ERV168]
gi|402980164|gb|EJX95791.1| putative DNA polymerase IV [Enterococcus faecium ERV26]
gi|402980893|gb|EJX96463.1| putative DNA polymerase IV [Enterococcus faecium ERV165]
gi|402985999|gb|EJY01151.1| putative DNA polymerase IV [Enterococcus faecium ERV102]
gi|402994248|gb|EJY08791.1| putative DNA polymerase IV [Enterococcus faecium ERV1]
gi|402998300|gb|EJY12563.1| putative DNA polymerase IV [Enterococcus faecium C621]
gi|402998547|gb|EJY12796.1| putative DNA polymerase IV [Enterococcus faecium E417]
gi|403001961|gb|EJY15974.1| putative DNA polymerase IV [Enterococcus faecium E422]
gi|403008428|gb|EJY21932.1| putative DNA polymerase IV [Enterococcus faecium C1904]
gi|403011172|gb|EJY24501.1| putative DNA polymerase IV [Enterococcus faecium C497]
gi|403014113|gb|EJY27131.1| putative DNA polymerase IV [Enterococcus faecium 514]
gi|403016353|gb|EJY29177.1| putative DNA polymerase IV [Enterococcus faecium 515]
gi|403017456|gb|EJY30199.1| putative DNA polymerase IV [Enterococcus faecium 513]
gi|403020988|gb|EJY33472.1| putative DNA polymerase IV [Enterococcus faecium 511]
gi|403026817|gb|EJY38752.1| putative DNA polymerase IV [Enterococcus faecium 510]
gi|403029973|gb|EJY41693.1| putative DNA polymerase IV [Enterococcus faecium 509]
gi|403037479|gb|EJY48751.1| putative DNA polymerase IV [Enterococcus faecium 506]
gi|403042057|gb|EJY53033.1| putative DNA polymerase IV [Enterococcus faecium 503]
gi|425723961|gb|EKU86847.1| hypothetical protein HMPREF9307_00559 [Enterococcus durans
FB129-CNAB-4]
gi|430481368|gb|ELA58524.1| DNA polymerase IV [Enterococcus faecium E0333]
gi|430548893|gb|ELA88740.1| DNA polymerase IV [Enterococcus faecium E1573]
gi|430550338|gb|ELA90134.1| DNA polymerase IV [Enterococcus faecium E1574]
gi|430555652|gb|ELA95189.1| DNA polymerase IV [Enterococcus faecium E1576]
gi|430560168|gb|ELA99474.1| DNA polymerase IV [Enterococcus faecium E1578]
gi|430582585|gb|ELB21007.1| DNA polymerase IV [Enterococcus faecium E1626]
gi|430614804|gb|ELB51775.1| DNA polymerase IV [Enterococcus faecium E2297]
gi|430619968|gb|ELB56771.1| DNA polymerase IV [Enterococcus faecium E2883]
gi|430628596|gb|ELB65030.1| DNA polymerase IV [Enterococcus faecium E1321]
gi|430634198|gb|ELB70333.1| DNA polymerase IV [Enterococcus faecium E2369]
gi|430635776|gb|ELB71855.1| DNA polymerase IV [Enterococcus faecium E1644]
gi|430639937|gb|ELB75791.1| DNA polymerase IV [Enterococcus faecium E2560]
gi|430648490|gb|ELB83896.1| DNA polymerase IV [Enterococcus faecium E6045]
gi|430649664|gb|ELB85032.1| DNA polymerase IV [Enterococcus faecium E6012]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|408491441|ref|YP_006867810.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
gi|408468716|gb|AFU69060.1| DNA polymerase IV DinP [Psychroflexus torquis ATCC 700755]
Length = 365
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 114/216 (52%), Gaps = 19/216 (8%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T SAGI+ NK +AK+AS +NKP Q T+P V L++L I+K + GK+
Sbjct: 139 TGLNASAGISINKFIAKIASDINKPNGQKTIPPEDVIDFLETLDIRKFHGV-GKVTQEKM 197
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
LG+ T DL + + LQ+ +G +G +N+ RG+ +V+ + KS G+ ++F
Sbjct: 198 YGLGIFTGVDLKLKTLEYLQDHFG-KSGLHYFNVVRGVHLSDVKPSRIRKSLGAERTFS- 255
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
K ++S + L +L E+++E + L+ ++ T+TL K+SD + + ++
Sbjct: 256 ----KNISSEIYMLEKL-EDIAEEVERRLKGSRVAGKTITLK---LKTSDFNIQ----TR 303
Query: 187 SCPLRY---GTAKIQEDTFN-LFQAGLREFLGSFGV 218
S L++ A I E+T LFQ +++ + G+
Sbjct: 304 SKTLKFFISSKALIMEETKALLFQEPIKDSIRLLGI 339
>gi|289550388|ref|YP_003471292.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
gi|289179920|gb|ADC87165.1| DNA polymerase IV [Staphylococcus lugdunensis HKU09-01]
Length = 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 IYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +L +G G L+N ARGI V++ + KS G+ +
Sbjct: 191 EKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
+F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 250 TFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|348688715|gb|EGZ28529.1| hypothetical protein PHYSODRAFT_552269 [Phytophthora sojae]
Length = 608
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGG 59
++ T+ T SAGIA N MLAK+ S MNKP Q +PF+ V L LP++K+ +G
Sbjct: 240 KIFDCTQLTASAGIAVNAMLAKICSDMNKPNGQYVLPFTRERVLTFLCDLPVRKIGGIGK 299
Query: 60 KLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI-SGEEVQARLLPKSH 118
L LGV T G+L K+ + T WL + G+ E Q R
Sbjct: 300 VTEKILNEALGVHTGGELFN-QRGKIFHLFTEKTAVWLLQTSLGVRERREKQER------ 352
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 176
KSF R ++++ + L C E+ + L DLE+ + A +T +K +D
Sbjct: 353 ---KSFSRERTFRSLSDPKE-LEAKCLEVCKMLAKDLEKANKAAKNVTF---VYKDTD 403
>gi|257885067|ref|ZP_05664720.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
gi|257820919|gb|EEV48053.1| DNA directed DNA polymerase [Enterococcus faecium 1,231,501]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|311064914|ref|YP_003971640.1| DNA polymerase IV [Bifidobacterium bifidum PRL2010]
gi|310867234|gb|ADP36603.1| DNA polymerase IV [Bifidobacterium bifidum PRL2010]
Length = 430
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 EVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L ARG+ G V KS GS
Sbjct: 207 ERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLCMAARGMDGRAVTPYTPEKSIGS 265
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 266 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|299066596|emb|CBJ37786.1| DNA polymerase IV, devoid of proofreading, damage-inducible protein
P [Ralstonia solanacearum CMR15]
Length = 362
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 134 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVSALPVERLFGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI +VQ + KS
Sbjct: 193 TAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQIRKSVSVE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L ++L+ R+
Sbjct: 252 ETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|407473475|ref|YP_006787875.1| DNA polymerase IV [Clostridium acidurici 9a]
gi|407049983|gb|AFS78028.1| DNA polymerase IV [Clostridium acidurici 9a]
Length = 339
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 6/173 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+VLKET T S GI++NK LAKLAS NKP + V +L L + + +G K
Sbjct: 117 KVLKETGLTMSRGISYNKFLAKLASDWNKPNGIKIITKEMVPDILLPLSVSSVHGIGKKS 176
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +G+ T+ +L++ ED L + +G +G ++N RGI V KS G
Sbjct: 177 SQKLNN-IGIYTIKELMRLPEDFLVDFFG-KSGREIYNRIRGIDNRTVNISSERKSIGVE 234
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
++F K + +Q +L + EL L S Q K I TL + + F++
Sbjct: 235 RTFTNHTKNKEI--LQEYLYKFSLELELSLKSKEMQAKTI--TLKIKDTNFRT 283
>gi|419797103|ref|ZP_14322604.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
gi|385698791|gb|EIG29135.1| ImpB/MucB/SamB family protein [Neisseria sicca VK64]
Length = 382
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 161 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 219
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 220 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 267
>gi|209559938|ref|YP_002286410.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
gi|209541139|gb|ACI61715.1| DNA polymerase IV [Streptococcus pyogenes NZ131]
Length = 364
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFALYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + + +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALFQDHKKLGKTIVL 299
>gi|431760524|ref|ZP_19549122.1| DNA polymerase IV [Enterococcus faecium E3346]
gi|430623868|gb|ELB60539.1| DNA polymerase IV [Enterococcus faecium E3346]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|430833777|ref|ZP_19451788.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430839165|ref|ZP_19457107.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430859625|ref|ZP_19477234.1| DNA polymerase IV [Enterococcus faecium E1552]
gi|430486182|gb|ELA63050.1| DNA polymerase IV [Enterococcus faecium E0679]
gi|430491162|gb|ELA67644.1| DNA polymerase IV [Enterococcus faecium E0688]
gi|430543162|gb|ELA83237.1| DNA polymerase IV [Enterococcus faecium E1552]
Length = 372
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|430837087|ref|ZP_19455063.1| DNA polymerase IV [Enterococcus faecium E0680]
gi|430487868|gb|ELA64576.1| DNA polymerase IV [Enterococcus faecium E0680]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|293550615|ref|ZP_06673283.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|431444918|ref|ZP_19513647.1| DNA polymerase IV [Enterococcus faecium E1630]
gi|291603236|gb|EFF33420.1| DNA polymerase IV [Enterococcus faecium E1039]
gi|430586080|gb|ELB24346.1| DNA polymerase IV [Enterococcus faecium E1630]
Length = 373
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|298207148|ref|YP_003715327.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
gi|83849783|gb|EAP87651.1| DNA polymerase IV [Croceibacter atlanticus HTCC2559]
Length = 368
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+T SAGI+ NK +AK+AS +NKP Q T+ V L++L I+K + GK+
Sbjct: 138 KTGLNASAGISINKFIAKVASDINKPNGQKTINPEEVIPFLETLDIRKFYGI-GKVTAEK 196
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
G+ T DL S + L+E +G +GT+ ++I RGI EV K H + KS
Sbjct: 197 MYLHGIFTGNDLKSKSLEYLEEHFG-KSGTYYYHIVRGIHNSEV------KPHRTRKSLG 249
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
R + + ++ + E ++E + LE++ T+TL
Sbjct: 250 AERTFSENITSELFMMERLEHIAEEIERRLEKSNVAGKTVTL 291
>gi|407451872|ref|YP_006723597.1| nucleotidyltransferase/DNA polymerase [Riemerella anatipestifer
RA-CH-1]
gi|403312856|gb|AFR35697.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Riemerella anatipestifer RA-CH-1]
Length = 360
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGI+ NK LAK+AS +NKP Q T+ + V L++LPI++ +G
Sbjct: 131 KIFETTGLTASAGISVNKFLAKVASDINKPNGQKTIHPTKVLSFLENLPIERFYGIGNVT 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +LG+ DL + S + L +G G ++I RGI EV+ + KS G
Sbjct: 191 ANKMY-QLGIYKGKDLKEKSLEYLITHFG-KMGRHYYDIVRGIHRSEVKPHRIAKSVGVE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSER 150
++ + T + L +L +EL ER
Sbjct: 249 HTYADD--IDTEKDIDQQLIRLAQELYER 275
>gi|418636789|ref|ZP_13199128.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
gi|374840485|gb|EHS03978.1| ImpB/MucB/SamB family protein [Staphylococcus lugdunensis VCU139]
Length = 359
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 8/171 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 IYEKTHLTASAGVSYNKFLAKLASGMNKPNGMTVIDYENVHKILMALDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +L +G G L+N ARGI V++ + KS G+ +
Sbjct: 191 EKIMHKHGIYNGQDLYQKDVFELVRLFG-KRGRGLYNKARGIDDSPVKSSRIRKSVGTER 249
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
+F T + + Q ELS + L + ++ A T+T+ FK
Sbjct: 250 TFA------TDVNDDDEILQKMWELSGKTAERLNKLQKSAKTVTVKIKTFK 294
>gi|377809466|ref|YP_005004687.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056207|gb|AEV95011.1| impB/mucB/samB family protein [Pediococcus claussenii ATCC BAA-344]
Length = 370
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 82/173 (47%), Gaps = 6/173 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T TCS GI++NK LAKLAS KP V V L+ +PI+ + +G K
Sbjct: 141 EIFAKTNLTCSTGISYNKFLAKLASEYEKPVGVAMVFPEDVTDFLNDMPIESFRGVGKKT 200
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ ++LGV DLL FSE L +G G L+ RGI V + KS G
Sbjct: 201 IPKM-HDLGVHFGRDLLSFSESDLIHYFG-KFGYVLYRQVRGIDDRPVAYQRERKSIGKE 258
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKS 174
++ P L T V+ L + + L + + + + K I L L + F++
Sbjct: 259 DTYINP--LTTDEEVELQLRIIAQNLLKYVTNQQKHGKTIV--LKLRYTDFET 307
>gi|422022011|ref|ZP_16368520.1| DNA polymerase IV [Providencia sneebia DSM 19967]
gi|414097761|gb|EKT59414.1| DNA polymerase IV [Providencia sneebia DSM 19967]
Length = 351
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ KE + T SAG+A K LAK+AS MNKP Q + ++ + +LP+KK+ +G
Sbjct: 129 QIFKELQLTASAGVAPIKFLAKIASDMNKPNGQYVITPQNMDEFVRTLPLKKIPGVGKVT 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L ++G+ T D+ + L +S G G LW I + L KS G
Sbjct: 189 AQKLL-DMGLATCSDVQHYDVVNLIKSMG-KFGQILWERCHAIDERPINPDRLRKSVGVE 246
Query: 122 KSFPGPRALKTVASVQHW------LNQLCEELSERLCSDLEQNKRIA 162
++ V + HW L++L +EL RL + + N+RIA
Sbjct: 247 RTL--------VQDIHHWEDCIPLLDKLYDELEVRL-TKISPNRRIA 284
>gi|311741548|ref|ZP_07715372.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311303718|gb|EFQ79797.1| DNA-directed DNA polymerase IV [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 462
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 17/226 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET CS G K AK+ SG KP +P +L L + K+ +G G
Sbjct: 132 IREETGLPCSIGAGSGKQFAKIGSGEAKPDGTFVIPAERQLDMLHPLAVNKLWGVGPVTG 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L++ +GV T+G L + +++ S G G LW +ARGI EV R + K +
Sbjct: 192 AKLKS-IGVETIGQLAAMTRKEVEISIGSVVGLQLWQLARGIDDREVAPRAISKQISTEH 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P+ L+T V + + E RL D R A T+T+ + +D
Sbjct: 251 TY--PKDLQTAPEVDAAITRAAEGAHRRLLKD----GRGARTVTVK---LRMADF----H 297
Query: 183 FPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFG-VKTQGSHYSG 227
S+S L Y T T F+ L + G ++ G YSG
Sbjct: 298 IESRSTTLPYATDDAAVLTAAAFK--LARYPDELGPIRLVGVSYSG 341
>gi|313668564|ref|YP_004048848.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
gi|313006026|emb|CBN87485.1| impB/mucB/samB family protein [Neisseria lactamica 020-06]
Length = 352
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|187920545|ref|YP_001889577.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
gi|187718983|gb|ACD20206.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
Length = 381
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T TCS GIA NK+LAKL S + KP T + ++ + + KK+ +G K
Sbjct: 150 VFEATNLTCSVGIAPNKLLAKLCSDIQKPDGITILRLEDLQARIWPMAAKKINGIGPKAN 209
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L + LG+TT+G++ SE L E +G + G WL ++ G+ V P S
Sbjct: 210 AKLTS-LGITTIGEIAACSEQWLIEQFGRSYGAWLHRVSHGLDDRPVVTHSEPVSMSRET 268
Query: 123 SFPGPRALKTVASVQHW--LNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + +V+H L L E++ DL++ +A + +
Sbjct: 269 TFE-----QDLHAVRHRQELGTAFTRLCEQVALDLQRKGYLARRIGI 310
>gi|302382770|ref|YP_003818593.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
gi|302193398|gb|ADL00970.1| DNA-directed DNA polymerase [Brevundimonas subvibrioides ATCC
15264]
Length = 358
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ET T SAGI++NK LAKLAS KP Q VP + ++ LP+K+ + G +
Sbjct: 133 RILEETGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGEAFVEILPVKRFYGV-GPV 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + LG+ T DL + S LQ+ +G +G W + I+RG V KS GS
Sbjct: 192 TAAKMSRLGIETGEDLRRQSLALLQQHFG-KSGPWYYAISRGEDHRAVNPNRERKSSGSE 250
Query: 122 KSF 124
+F
Sbjct: 251 TTF 253
>gi|322516146|ref|ZP_08069080.1| DNA-directed DNA polymerase IV [Streptococcus vestibularis ATCC
49124]
gi|322125391|gb|EFX96743.1| DNA-directed DNA polymerase IV [Streptococcus vestibularis ATCC
49124]
Length = 367
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYIGADLLKIPEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|258574661|ref|XP_002541512.1| MUS42 protein [Uncinocarpus reesii 1704]
gi|237901778|gb|EEP76179.1| MUS42 protein [Uncinocarpus reesii 1704]
Length = 1135
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T S GI N + AKLA KPA Q + +V + ++++ + LG
Sbjct: 497 IKRKTGCDVSVGIGGNILQAKLALRKAKPAGQFQLKPDAVLDFIGEFTVQQLPGVAYSLG 556
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S+++L +S G TG LW+ ARGI EV + P+ S +
Sbjct: 557 GKLE-ELGVKYVKDIRELSKERLIQSLGPKTGAKLWDYARGIDNAEV-GDVAPRKSVSAE 614
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
G R + T A + ++ LC+EL RL + + K++ + A
Sbjct: 615 INWGIRFV-TQAQAEEFVQSLCDELHRRLVENGVKGKQLTMRIMRRA 660
>gi|425056854|ref|ZP_18460293.1| putative DNA polymerase IV [Enterococcus faecium 504]
gi|403041417|gb|EJY52432.1| putative DNA polymerase IV [Enterococcus faecium 504]
Length = 373
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 8 EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQN 67
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K + +
Sbjct: 150 QLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM-H 208
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
ELG+ T DL + +E L ++G G L+ RGI V KS G ++ P
Sbjct: 209 ELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQP 267
Query: 128 RALKTVASVQHWLNQLCEELSERL 151
L+T +V L QL E++ E L
Sbjct: 268 --LQTEEAVLTQLRQLAEKVEEAL 289
>gi|387760656|ref|YP_006067633.1| DNA polymerase IV [Streptococcus salivarius 57.I]
gi|339291423|gb|AEJ52770.1| DNA polymerase IV [Streptococcus salivarius 57.I]
Length = 351
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI+K +G K
Sbjct: 125 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLGKLPIEKFHGVGKKSV 184
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 185 ERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 242
Query: 123 SF 124
++
Sbjct: 243 TY 244
>gi|421862800|ref|ZP_16294504.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379710|emb|CBX21699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 352
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVEA 237
>gi|312863334|ref|ZP_07723572.1| putative DNA polymerase IV [Streptococcus vestibularis F0396]
gi|311100870|gb|EFQ59075.1| putative DNA polymerase IV [Streptococcus vestibularis F0396]
Length = 367
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYIGADLLKIPEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|307290240|ref|ZP_07570156.1| DNA polymerase IV [Enterococcus faecalis TX0411]
gi|306498661|gb|EFM68162.1| DNA polymerase IV [Enterococcus faecalis TX0411]
Length = 372
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYLLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|418018528|ref|ZP_12658084.1| DNA polymerase IV [Streptococcus salivarius M18]
gi|345527377|gb|EGX30688.1| DNA polymerase IV [Streptococcus salivarius M18]
Length = 369
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLGKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK E L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMEIYTGADLLKIPEMTLIDRFG-RFGFDLFRKARGISNSPVRPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|416161050|ref|ZP_11606273.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|418288632|ref|ZP_12901092.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|418290884|ref|ZP_12902979.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|433473835|ref|ZP_20431195.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|433481353|ref|ZP_20438620.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|433484383|ref|ZP_20441607.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|433486655|ref|ZP_20443847.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
gi|325128493|gb|EGC51371.1| DNA polymerase IV [Neisseria meningitidis N1568]
gi|372200836|gb|EHP14847.1| DNA polymerase IV [Neisseria meningitidis NM220]
gi|372201466|gb|EHP15389.1| DNA polymerase IV [Neisseria meningitidis NM233]
gi|432209296|gb|ELK65265.1| impB/mucB/samB family protein [Neisseria meningitidis 97021]
gi|432218110|gb|ELK73973.1| impB/mucB/samB family protein [Neisseria meningitidis 2006087]
gi|432220314|gb|ELK76137.1| impB/mucB/samB family protein [Neisseria meningitidis 2002038]
gi|432221174|gb|ELK76987.1| impB/mucB/samB family protein [Neisseria meningitidis 97014]
Length = 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIASNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|291399949|ref|XP_002716300.1| PREDICTED: DNA polymerase iota, partial [Oryctolagus cuniculus]
Length = 709
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQN 67
T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK+M +G K L+
Sbjct: 215 LTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLNHIKEMPGVGYKTTKRLE- 273
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LG+T+V DL FS L++ G + + ++ G V P+S SF
Sbjct: 274 ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVIPSGPPQSFSEEDSF--- 330
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
+ + V+ + +L L R+C Q+ R HT+ L F S R+ S+
Sbjct: 331 KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLIIRRFSSGKLCGRE---SRQ 383
Query: 188 CPL 190
CP+
Sbjct: 384 CPI 386
>gi|146419760|ref|XP_001485840.1| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 7/173 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E +T S GIA NK LAKLA+G NKP QT + + + L + + +GGK G
Sbjct: 259 IYDELSYTTSGGIARNKFLAKLAAGFNKPDNQTIIRLALIPNFLTNFQFNDVSGMGGKTG 318
Query: 63 TSLQNEL----GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLP 115
++ GV + L + ++ +Q+ Y + +++I RG + ++ R
Sbjct: 319 DTVLARFDTPPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDV 378
Query: 116 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
KS S K+F R +KT+ + WL +L R ++N + L H
Sbjct: 379 KSMMSRKNFIPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLLMLLVSH 431
>gi|156340492|ref|XP_001620463.1| hypothetical protein NEMVEDRAFT_v1g148076 [Nematostella vectensis]
gi|156205419|gb|EDO28363.1| predicted protein [Nematostella vectensis]
Length = 224
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E SAGI+ NK +AK+AS +NKP Q T+ V L+ LPI K +G
Sbjct: 55 RIWDELTLRASAGISINKFIAKIASDINKPNGQKTINPEEVVSFLEELPINKFFGIGKVT 114
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ N G+ DL K+++++L+ ++G +G ++I RGI +V+ + KS +
Sbjct: 115 AAKMHN-YGIFKGADLKKWTKEELEATFG-KSGAQYYHIVRGIHNSQVKPNRVRKSIAAE 172
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F + + + L+++ EL +R+ + + K I TL + S F
Sbjct: 173 RTF--TENISSEIYMIERLDKIAVELEKRMVASNTKGKTI--TLKIKYSDF 219
>gi|93117311|gb|ABE99573.1| DinB [Neisseria meningitidis]
gi|93117319|gb|ABE99577.1| DinB [Neisseria meningitidis]
Length = 336
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|167644442|ref|YP_001682105.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
gi|167346872|gb|ABZ69607.1| DNA-directed DNA polymerase [Caulobacter sp. K31]
Length = 375
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T T SAG+++NK LAKLAS KP Q VP + + +LPI + +G
Sbjct: 133 RILETTGLTASAGVSYNKFLAKLASDQRKPNGQFVVPPGKGEAFVQTLPIGRFHGVGAVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ LGV T DL + S LQ+ +G +G W + IARG V + KS GS
Sbjct: 193 EAKMKR-LGVHTGEDLHRQSLAFLQQHFG-RSGPWYYAIARGEDDRRVNPDRVRKSSGSE 250
Query: 122 KSF 124
+F
Sbjct: 251 TTF 253
>gi|392987494|ref|YP_006486087.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
gi|392334914|gb|AFM69196.1| DNA-damage-inducible protein P [Enterococcus hirae ATCC 9790]
Length = 315
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 96/211 (45%), Gaps = 12/211 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E + TCSAG+++NK LAKLAS KP T V L +LPI K +G K
Sbjct: 91 IWEEVKLTCSAGVSYNKFLAKLASDFQKPKGITIVAPQDALTFLKALPIDKFHGVGKKTV 150
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL +E L + +G G L+ RG+ V KS G
Sbjct: 151 PKM-HELGIFTGEDLYNCTEMMLIQQFG-KMGYSLYRKVRGVHDAPVNVTRERKSVGKEH 208
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P L+T +V L QL E++ E L++ ++ T+ L + R
Sbjct: 209 TYGQP--LQTEEAVLAQLQQLAEKVEE----SLKRVQKHGKTVVLKVRYTDYTTVTKRVT 262
Query: 183 FPS---KSCPLRYGTAKIQEDTFNLFQAGLR 210
P K L Y + I E+ + Q G+R
Sbjct: 263 LPEYIYKKEALFYQASLIWEEILGIEQ-GIR 292
>gi|339480167|ref|ZP_08655826.1| DNA repair nucleotidyltransferase/DNA polymerase [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 361
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+LKET+ T S G++HNK+LAKL S NKP T + + LD LPI + +G K
Sbjct: 138 QILKETQLTSSIGVSHNKLLAKLGSEYNKPNGVTVIDHENQLQFLDYLPISAFRGVGKKT 197
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ELG+ DL + S++ L+ +G G L+ ARG+ V+ + +S G
Sbjct: 198 KEKF-DELGIENGLDLRQMSQETLKTEFG-KMGERLYWQARGVHFGAVEWQRQRQSIGKE 255
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F AL +VQ +L L L++ K I TL +
Sbjct: 256 ETF--DHALHDNNAVQIEFKKLVSS----LIMSLKRQKLIGRTLNI 295
>gi|385335758|ref|YP_005889705.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
gi|317164301|gb|ADV07842.1| DNA polymerase IV [Neisseria gonorrhoeae TCDC-NG08107]
Length = 368
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ GK+
Sbjct: 147 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPG-AGKVT 205
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 206 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|291394393|ref|XP_002713588.1| PREDICTED: DNA polymerase iota [Oryctolagus cuniculus]
Length = 733
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQN 67
T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK+M +G K L+
Sbjct: 215 LTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQDLMHSLNHIKEMPGVGYKTTKRLE- 273
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LG+T+V DL FS L++ G + + ++ G V P+S SF
Sbjct: 274 ALGITSVHDLQTFSSKILEKELGISVAQRIQKLSFGEDNSPVIPSGPPQSFSEEDSF--- 330
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
+ + V+ + +L L R+C Q+ R HT+ L F S R+ S+
Sbjct: 331 KKCSSEVEVRKKIEELLTSLLNRVC----QDGRKPHTIRLIIRRFSSGKLCGRE---SRQ 383
Query: 188 CPL 190
CP+
Sbjct: 384 CPI 386
>gi|225377127|ref|ZP_03754348.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
gi|225211032|gb|EEG93386.1| hypothetical protein ROSEINA2194_02773 [Roseburia inulinivorans DSM
16841]
Length = 405
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 74/153 (48%), Gaps = 3/153 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE FT + GI+ NK+LAK+AS KP + T+ + LP++ + G
Sbjct: 145 RIYKELGFTVNIGISTNKLLAKMASDFEKPNRVHTLFPEEMATKFWPLPVESLYGCGKTT 204
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L++ LG+TT+G L K L ++ + G +LW A GIS V A P + G G
Sbjct: 205 AKRLRS-LGITTIGALAKADRQMLLSNFK-SQGDYLWESANGISSSAVTAE-SPANKGYG 261
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD 154
S P + + H L LCE + R+ D
Sbjct: 262 NSVTLPYDVTDTENAHHILLSLCETVGARIRYD 294
>gi|385341648|ref|YP_005895519.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|385857505|ref|YP_005904017.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
gi|325201854|gb|ADY97308.1| DNA polymerase IV [Neisseria meningitidis M01-240149]
gi|325208394|gb|ADZ03846.1| DNA polymerase IV [Neisseria meningitidis NZ-05/33]
Length = 352
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|424778602|ref|ZP_18205549.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
gi|422886604|gb|EKU29019.1| DNA-directed DNA polymerase [Alcaligenes sp. HPC1271]
Length = 389
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 95/214 (44%), Gaps = 7/214 (3%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T TCS GI NK+L+K+AS +NKP + V + L + K+ +G K L
Sbjct: 160 TGLTCSVGITPNKLLSKIASELNKPNGACVLTMDDVPTRIWPLAVGKINGIGPKSVVKL- 218
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
E+G+ +G+L +KLQE +G WL +A+G + PKS +F
Sbjct: 219 TEMGIQKIGELAATPAEKLQEQFGLRYAQWLMAVAQGQDERPLSTDRTPKSISRETTF-- 276
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
R L V + L+ + E L E+L DL ++ A T+ + K D + + S
Sbjct: 277 ERDLH-VRMDRSRLSAVLESLCEKLEQDLRKSAMCAQTIGIK---LKFEDFKTVTRDLSL 332
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKT 220
P+ A + NL +A L L GVK
Sbjct: 333 PAPVLAADAILAAARQNLKRAVLDRRLRLLGVKA 366
>gi|163786797|ref|ZP_02181245.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
gi|159878657|gb|EDP72713.1| hypothetical protein FBALC1_16467 [Flavobacteriales bacterium
ALC-1]
Length = 369
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K + GK+
Sbjct: 134 RIFDEVGLTASAGISINKFVAKIASDYNKPNGQKTVNPEDVLQFLEDLDIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ G+ T DL S D L++++G +G ++I RGI +V+ + KS +
Sbjct: 193 TAEKMYQKGIFTGKDLKSKSADYLEKNFG-KSGRSYYHIVRGIHNSKVKPNRIRKSLAAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F L + + L Q+ EE+S+R L+++K T+TL
Sbjct: 252 RTF--RENLSSEIFMLEKLRQIAEEVSKR----LDKSKVAGKTITL 291
>gi|339624645|ref|ZP_08660434.1| nucleotidyltransferase/DNA polymerase for DNA repair
[Fructobacillus fructosus KCTC 3544]
Length = 364
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET+ TCS G+++NK+LAKL S +KP T +P + + +LPIK + +G K
Sbjct: 138 RIWQETQLTCSVGVSYNKVLAKLGSEHHKPNGVTVIPHELAQDFVLNLPIKDFRGVGKKT 197
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ ++GVT DL S D+L+ +G + G L+ AR V+ R + +S G
Sbjct: 198 LEKFE-KMGVTDGRDLYAMSLDELRVQFG-SFGDVLYWQARATHFSPVKDRSVRQSVGKE 255
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F AL + V+ + L+E++ ++++ K + TLT+ + D ++
Sbjct: 256 STF--ELALHDRSEVE----MTFKTLAEKVVLNMKKKKLLGRTLTV---KIRDDDFKTQT 306
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
K +++ P A + +F + +F ++ G +S
Sbjct: 307 KGMTQAVPFELDAAFLARQAMLIFDEA---YPDNFSIRLLGLTFS 348
>gi|195977472|ref|YP_002122716.1| DNA polymerase IV [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974177|gb|ACG61703.1| DNA polymerase IV DinB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 367
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCSAG+++NK LAKLAS KP T V L+ LPI+K +G + L +E
Sbjct: 149 LTCSAGVSYNKFLAKLASDFEKPHGLTLVLPDDALPFLEKLPIEKFHGVGKRTVERL-HE 207
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
+G+ T DLL+ E L + +G G L+ ARGIS V+ + KS S +++
Sbjct: 208 MGIYTGQDLLRVPEMTLIDQFG-RFGYELYRKARGISHSPVKPNRIRKSISSERTY---- 262
Query: 129 ALKTVASVQHWLNQLCEELSE---RLCSDLEQNKRIAHTLTL 167
A + + + E+S+ R+ LE NK++ + L
Sbjct: 263 -----AKLLYQEADIKAEISKNASRVADLLEANKKLGRIIVL 299
>gi|257867910|ref|ZP_05647563.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257874239|ref|ZP_05653892.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
gi|257801993|gb|EEV30896.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC30]
gi|257808403|gb|EEV37225.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC10]
Length = 374
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 8/183 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET TCSAG+++NK LAKL+S +KP T V L LPI K +G K
Sbjct: 145 IWQETHLTCSAGVSYNKFLAKLSSDYHKPRGLTVVMPDEAVAFLQQLPIDKFHGIGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL +SE L +G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIFTGADLYGWSEMALIREFG-KMGYSLYRKVRGIHDSPVSVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P + S + L+QL ++E + L++ ++ T+ L S R
Sbjct: 263 TYGNP-----LTSEEQVLSQL-RAIAEEVERSLKRTQKHGKTVVLKVRYSDYSTITKRVT 316
Query: 183 FPS 185
P+
Sbjct: 317 LPT 319
>gi|93117313|gb|ABE99574.1| DinB [Neisseria meningitidis]
Length = 336
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|340028073|ref|ZP_08664136.1| DNA-directed DNA polymerase [Paracoccus sp. TRP]
Length = 363
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAG+++NK LAKLAS KP +P + + LPI + +G
Sbjct: 134 RIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGPEFVHGLPIGRFHGIGPAT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+++ G+ T DL + + + L +G +GT+ WNIARGI EV+ + KS G+
Sbjct: 194 AARMESH-GILTGADLARQTLEFLTARFG-KSGTYYWNIARGIDTREVKPNRIRKSIGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++ L+ + + L E L++++ R+ T+TL K D R+
Sbjct: 252 NTY--FEDLRDLPAAHEAL----EVLADKVWRHATNAGRVGRTVTL-----KVKYGDFRQ 300
Query: 182 KFPSKSCP 189
++S P
Sbjct: 301 ITRARSLP 308
>gi|171057625|ref|YP_001789974.1| DNA-directed DNA polymerase [Leptothrix cholodnii SP-6]
gi|170775070|gb|ACB33209.1| DNA-directed DNA polymerase [Leptothrix cholodnii SP-6]
Length = 436
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V + T +CS G+A NK+LAK+ S ++KP T V V + LP++++ +G K
Sbjct: 159 VRRATGLSCSVGLAPNKLLAKICSDLDKPDGLTVVMAEDVASRIWPLPVRRIHGVGPKAS 218
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L++ LGV T+G+L + S L + +G + G WL A G V P S
Sbjct: 219 ARLES-LGVHTIGELARQSPAWLSDHFGAHHGEWLLAAAHGQDDRPVVTESEPVSMSRET 277
Query: 123 SFP---GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDS 177
+F PR + + L ++ +L ER+ DL + + T + L F++
Sbjct: 278 TFERDLHPRTDRAL------LGRIFTDLCERVGDDLRRKGYVGRTIGIKLRFDDFRTVTR 331
Query: 178 DSRKKFPS 185
D P+
Sbjct: 332 DHTVALPT 339
>gi|418622447|ref|ZP_13185198.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU123]
gi|374826837|gb|EHR90717.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU123]
Length = 309
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I +G
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGVGK--A 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 190 SKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 248
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+F T + + + ELS + L + ++ T+T+ ++ +KK
Sbjct: 249 TFS------TDVNDDDVILRKIRELSGKTAERLNKIQKSGKTVTVKIKTYQYETISKQKK 302
Query: 183 F 183
F
Sbjct: 303 F 303
>gi|398356293|ref|YP_006529620.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
gi|399995501|ref|YP_006575739.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|365182348|emb|CCE99198.1| hypothetical protein SFHH103_04725 [Sinorhizobium fredii HH103]
gi|390131540|gb|AFL54920.1| DNA polymerase IV [Sinorhizobium fredii USDA 257]
Length = 363
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T SAGI++NK LAK+AS +NKP Q + + ++ LPIKK +G +
Sbjct: 142 TGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGPAFVEQLPIKKFHGVGPATAEKM- 200
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ T DL + S + L E +G +G + + IARGI E++ + KS G+ +F
Sbjct: 201 HRLGIETGADLKEKSFEFLVEHFG-KSGPYFYGIARGIDNREIKPNRVRKSVGAEDTF 257
>gi|78043703|ref|YP_360472.1| DNA polymerase IV [Carboxydothermus hydrogenoformans Z-2901]
gi|123576024|sp|Q3ABL2.1|DPO4_CARHZ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|77995818|gb|ABB14717.1| DNA polymerase IV - AMBIGUITY [Carboxydothermus hydrogenoformans
Z-2901]
Length = 391
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ETE T S G+A NK LAKLAS +NKP V +V L LP++ + +G K+
Sbjct: 131 RIFEETELTASVGVAPNKFLAKLASEVNKPDGFCEVREDNVLDFLAPLPVEMLWGVGEKM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 119
L N++G+ TV D + E L++ +G G L+ ++RGI EV +PKS G
Sbjct: 191 KERL-NDMGIKTVQDFWELPEFFLRKKFGV-LGQNLYYLSRGIDFREVIPERVPKSLG 246
>gi|386309576|ref|YP_006005632.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|418241392|ref|ZP_12867921.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550652|ref|ZP_20506696.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
gi|318604550|emb|CBY26048.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica Y11]
gi|351779193|gb|EHB21311.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789787|emb|CCO69736.1| DNA polymerase IV [Yersinia enterocolitica IP 10393]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
++ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IVIELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ ELG+ T D+ +S+ +L + +G G LW + GI EV L KS G +
Sbjct: 190 KRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLRKSVGVEQ 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ + W + CE L E+L +LE R
Sbjct: 248 TL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|194098704|ref|YP_002001766.1| DNA polymerase IV [Neisseria gonorrhoeae NCCP11945]
gi|193933994|gb|ACF29818.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
NCCP11945]
Length = 368
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ GK+
Sbjct: 147 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPG-AGKVT 205
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 206 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 253
>gi|433469657|ref|ZP_20427074.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
gi|432202554|gb|ELK58614.1| impB/mucB/samB family protein [Neisseria meningitidis 98080]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|430821683|ref|ZP_19440274.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430829563|ref|ZP_19447655.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430869936|ref|ZP_19483091.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|431766003|ref|ZP_19554501.1| DNA polymerase IV [Enterococcus faecium E4215]
gi|430438165|gb|ELA48638.1| DNA polymerase IV [Enterococcus faecium E0045]
gi|430480316|gb|ELA57492.1| DNA polymerase IV [Enterococcus faecium E0269]
gi|430559313|gb|ELA98672.1| DNA polymerase IV [Enterococcus faecium E1575]
gi|430627336|gb|ELB63845.1| DNA polymerase IV [Enterococcus faecium E4215]
Length = 372
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K + GK
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGV-GKRTVPRM 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|22095618|sp|Q8XZ19.2|DPO4_RALSO RecName: Full=DNA polymerase IV; Short=Pol IV
Length = 357
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 129 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERLFGV-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI +VQ + KS
Sbjct: 188 TAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQIRKSVSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L ++L+ R+
Sbjct: 247 ETYAT--DLRTLDDCQRELTILVDQLAARV 274
>gi|312143947|ref|YP_003995393.1| DNA-directed DNA polymerase [Halanaerobium hydrogeniformans]
gi|311904598|gb|ADQ15039.1| DNA-directed DNA polymerase [Halanaerobium hydrogeniformans]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 6/204 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T+ T S G++ NK LAKLAS KP T + + +K ++ L IKK+ +G L
Sbjct: 137 TDLTISIGLSVNKFLAKLASDFEKPDGLTVIEAAEIKKIMAGLDIKKIWGIGDSFAKKL- 195
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
NELG+ V D+ +S ++L+ +G G ++ ++RGI EV+++ KS ++F
Sbjct: 196 NELGIKKVKDIWPYSLEELKNRFG-KAGVKIFYLSRGIDNREVESQSEIKSISHEETF-- 252
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
++ + +L ++ E++S RL S+ + + + + FK+ + KF
Sbjct: 253 AENIEDSEQLLAYLLKMSEKISFRLHSNSLSGNTV--FIKVRYADFKTLNRQKSFKFSLD 310
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLR 210
S Y A+ D +LF +R
Sbjct: 311 STKNIYKIAQELIDKDDLFDKPVR 334
>gi|298246786|ref|ZP_06970591.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
gi|297549445|gb|EFH83311.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963]
Length = 362
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T+ T SAG+++NK +AKLAS KP T + L+SLPI+K +G
Sbjct: 133 RIYEHTQLTASAGVSYNKFIAKLASDYKKPDGLTVITPQQASRFLESLPIQKFFGVGRVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ Q E G+ T DL SE++L+E + G+ + RG V+ + KS G
Sbjct: 193 ASRFQ-EHGIHTGADLKSLSEERLRELFQ-ERGSMFYRYVRGEDERSVEPIRVRKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
+ AL A V L L E++ RL
Sbjct: 251 TTLAEDLALAEHAEVIRILTDLAEKVERRLV 281
>gi|255068100|ref|ZP_05319955.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|340362974|ref|ZP_08685331.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|349610910|ref|ZP_08890230.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
gi|255047615|gb|EET43079.1| DNA-directed DNA polymerase [Neisseria sicca ATCC 29256]
gi|339886785|gb|EGQ76409.1| DNA-directed DNA polymerase IV [Neisseria macacae ATCC 33926]
gi|348615332|gb|EGY64854.1| DNA polymerase IV [Neisseria sp. GT4A_CT1]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|190345515|gb|EDK37413.2| hypothetical protein PGUG_01511 [Meyerozyma guilliermondii ATCC
6260]
Length = 673
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E +T S GIA NK LAKLA+G NKP QT + +S+ L + + +GGK G
Sbjct: 259 IYDELSYTTSGGIARNKFLAKLAAGFNKPDNQTIIRSASIPNFLTNFQFNDVSGMGGKTG 318
Query: 63 TSLQNEL----GVTTVGDLLK-FSEDKLQESYGFNT--GTWLWNIARGISGEEVQARLLP 115
++ GV + L + ++ +Q+ Y + +++I RG + ++ R
Sbjct: 319 DTVLARFDTPPGVNSFTHLRENYTLQDIQKEYPQDPQFAQKIYDIVRGDDKQPLRLRTDV 378
Query: 116 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
KS S K+F R +KT+ + WL +L R ++N ++ + H
Sbjct: 379 KSMMSRKNFIPQRPVKTLFDIFSWLKVYAGDLHNRFIDLDDENMNLSMSSVSH 431
>gi|17546306|ref|NP_519708.1| DNA polymerase IV [Ralstonia solanacearum GMI1000]
gi|17428603|emb|CAD15289.1| probable dna polymerase iv (pol iv) protein [Ralstonia solanacearum
GMI1000]
Length = 362
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 134 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERLFGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI +VQ + KS
Sbjct: 193 TAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQIRKSVSVE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L ++L+ R+
Sbjct: 252 ETYAT--DLRTLDDCQRELTILVDQLAARV 279
>gi|385840700|ref|YP_005864024.1| DNA polymerase IV [Lactobacillus salivarius CECT 5713]
gi|300214821|gb|ADJ79237.1| DNA polymerase IV [Lactobacillus salivarius CECT 5713]
Length = 357
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T+ TCS G+++NK LAKLAS +KP T V V+ L ++PIKK + +G K
Sbjct: 133 EIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFNMPIKKFRGVGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ E G+ DL E L +G G L+ RGI V+ + KS G
Sbjct: 193 LPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRPVEWKRERKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSE 149
++F P LKTV V L + +L +
Sbjct: 251 RTFDQP--LKTVEEVDSQLRLIATKLVD 276
>gi|298368851|ref|ZP_06980169.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
gi|298282854|gb|EFI24341.1| DNA polymerase IV [Neisseria sp. oral taxon 014 str. F0314]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L ET T SAGIA NK LAK+AS KP Q +P L++LP+ K+ + GK+
Sbjct: 130 EILAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKAAAFLETLPLGKIPGV-GKV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
LG+ T GDL +F +L +G G L+++ARG+ V+
Sbjct: 189 TLKKMQSLGMRTAGDLRRFERGELLNLFG-RYGYRLYDLARGVDERPVK 236
>gi|431745421|ref|ZP_19534267.1| DNA polymerase IV [Enterococcus faecium E2134]
gi|430610468|gb|ELB47613.1| DNA polymerase IV [Enterococcus faecium E2134]
Length = 373
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K + GK
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGV-GKRTVPRM 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|336476258|ref|YP_004615399.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
gi|335929639|gb|AEH60180.1| DNA-directed DNA polymerase [Methanosalsum zhilinae DSM 4017]
Length = 361
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + TCS GIA K +AK+AS NKP T VP + VK L +P+ K+ +G K
Sbjct: 137 EIFRAEGLTCSIGIAPGKKVAKIASDYNKPDGLTVVPPAKVKEFLAPMPVSKIPGIGKKT 196
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ E+ + VG L ++ L +G +G ++ IA G+ E++ KS
Sbjct: 197 EQMLR-EMNIYRVGQLAEYDVQALISRFG-KSGIFMKQIANGVDHGEIKQYRESKSISKE 254
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F A + V+ L LCEE+ + + + + I TL + S F++ S
Sbjct: 255 DTFEEDTADYRI--VESVLMSLCEEVHRAMKINNFRFRTI--TLKVRFSDFRTYTRSSTL 310
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLG 214
K P++ + I++ + NL ++EF+G
Sbjct: 311 KCPAEEMDI------IKQHSKNL----IKEFIG 333
>gi|385855494|ref|YP_005902007.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
gi|325204435|gb|ADY99888.1| DNA polymerase IV [Neisseria meningitidis M01-240355]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|385338282|ref|YP_005892155.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|433475868|ref|ZP_20433205.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|433513766|ref|ZP_20470555.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|433515222|ref|ZP_20471995.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|433518610|ref|ZP_20475345.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|433524427|ref|ZP_20481085.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|433528518|ref|ZP_20485127.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|433530726|ref|ZP_20487310.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|433532988|ref|ZP_20489550.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|433534767|ref|ZP_20491305.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
gi|319410696|emb|CBY91075.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis WUE 2594]
gi|432208977|gb|ELK64948.1| impB/mucB/samB family protein [Neisseria meningitidis 88050]
gi|432247075|gb|ELL02518.1| impB/mucB/samB family protein [Neisseria meningitidis 63049]
gi|432251130|gb|ELL06502.1| impB/mucB/samB family protein [Neisseria meningitidis 96023]
gi|432255018|gb|ELL10351.1| impB/mucB/samB family protein [Neisseria meningitidis 2004090]
gi|432258654|gb|ELL13935.1| impB/mucB/samB family protein [Neisseria meningitidis 97020]
gi|432265319|gb|ELL20515.1| impB/mucB/samB family protein [Neisseria meningitidis NM3652]
gi|432265536|gb|ELL20728.1| impB/mucB/samB family protein [Neisseria meningitidis NM3642]
gi|432266344|gb|ELL21530.1| impB/mucB/samB family protein [Neisseria meningitidis 2007056]
gi|432271036|gb|ELL26166.1| impB/mucB/samB family protein [Neisseria meningitidis 2001212]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|294055037|ref|YP_003548695.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
gi|293614370|gb|ADE54525.1| DNA-directed DNA polymerase [Coraliomargarita akajimensis DSM
45221]
Length = 350
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 4/174 (2%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ET T SAGIA NK++AK+AS NKP Q V S V+ + LPI+K+ +G K
Sbjct: 131 RETGLTASAGIAPNKLIAKIASDWNKPNGQCIVGPSKVEAFMRPLPIRKIWGIGPKSAQR 190
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
ELG+ T G L + + +L +G + G L+ + RGI V+ + KS +F
Sbjct: 191 F-AELGIETCGQLQELDQTQLTHRFG-SFGFELYKLCRGIDERPVEPNRIRKSLSCEHTF 248
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 178
+ L+T+ + + L + +EL + L + + + L + F+ + ++
Sbjct: 249 --QQNLETLRACESQLERQFDELLQDLRASAPDRQITKLVIKLKFADFRQTTAE 300
>gi|431183686|ref|ZP_19499994.1| DNA polymerase IV [Enterococcus faecium E1620]
gi|430573272|gb|ELB12096.1| DNA polymerase IV [Enterococcus faecium E1620]
Length = 376
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K + GK
Sbjct: 149 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGV-GKRTVPRM 207
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 208 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 266
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 267 P--LQTEEAVLTQLRQLAEKVEEAL 289
>gi|294669256|ref|ZP_06734336.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291308888|gb|EFE50131.1| DNA-directed DNA polymerase [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 354
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L ET T SAG+A NK LAK+AS NKP Q +P V+ L LP+ K+ + GK+
Sbjct: 131 ILAETGLTASAGVAPNKFLAKIASDWNKPNGQFVLPPQKVEAFLTGLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ TVGDL + S +L +G G L ++A GI V+A
Sbjct: 190 RQKMQRLGMNTVGDLRRHSPGELANLFG-KWGYRLHDLAYGIDNRPVKA 237
>gi|254493799|ref|ZP_05106970.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268594856|ref|ZP_06129023.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268596764|ref|ZP_06130931.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268601428|ref|ZP_06135595.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268603758|ref|ZP_06137925.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268682227|ref|ZP_06149089.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291043738|ref|ZP_06569454.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
gi|226512839|gb|EEH62184.1| impB/mucB/samB family protein [Neisseria gonorrhoeae 1291]
gi|268548245|gb|EEZ43663.1| DNA polymerase IV [Neisseria gonorrhoeae 35/02]
gi|268550552|gb|EEZ45571.1| DNA polymerase IV [Neisseria gonorrhoeae FA19]
gi|268585559|gb|EEZ50235.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID18]
gi|268587889|gb|EEZ52565.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID1]
gi|268622511|gb|EEZ54911.1| impB/mucB/samB family protein [Neisseria gonorrhoeae PID332]
gi|291012201|gb|EFE04190.1| DNA polymerase IV [Neisseria gonorrhoeae DGI2]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPG-AGKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 237
>gi|218768451|ref|YP_002342963.1| DNA polymerase IV [Neisseria meningitidis Z2491]
gi|433480065|ref|ZP_20437352.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|433520223|ref|ZP_20476941.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|433541303|ref|ZP_20497752.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
gi|22095638|sp|Q9JRG1.1|DPO4_NEIMA RecName: Full=DNA polymerase IV; Short=Pol IV
gi|6900413|emb|CAB72023.1| putative DNA-damage inducible protein P [Neisseria meningitidis]
gi|121052459|emb|CAM08795.1| impB/mucB/samB family protein [Neisseria meningitidis Z2491]
gi|432215025|gb|ELK70916.1| impB/mucB/samB family protein [Neisseria meningitidis 63041]
gi|432253761|gb|ELL09100.1| impB/mucB/samB family protein [Neisseria meningitidis 65014]
gi|432276950|gb|ELL32002.1| impB/mucB/samB family protein [Neisseria meningitidis 63006]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|421538412|ref|ZP_15984588.1| DNA polymerase IV [Neisseria meningitidis 93003]
gi|402316439|gb|EJU51984.1| DNA polymerase IV [Neisseria meningitidis 93003]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|415836107|ref|ZP_11518536.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|417284255|ref|ZP_12071550.1| DNA polymerase IV [Escherichia coli 3003]
gi|425276150|ref|ZP_18667497.1| DNA polymerase IV [Escherichia coli ARS4.2123]
gi|323191391|gb|EFZ76653.1| DNA polymerase IV [Escherichia coli RN587/1]
gi|386242464|gb|EII84199.1| DNA polymerase IV [Escherichia coli 3003]
gi|408207435|gb|EKI32179.1| DNA polymerase IV [Escherichia coli ARS4.2123]
Length = 351
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +L + K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLSLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>gi|429743284|ref|ZP_19276854.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
gi|429165943|gb|EKY07963.1| putative DNA polymerase IV [Neisseria sp. oral taxon 020 str.
F0370]
Length = 360
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 61/105 (58%), Gaps = 2/105 (1%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
ET T SAGIA NK LAK+AS NKP Q ++P + L +LP+ K+ + GK+
Sbjct: 134 ETGLTASAGIAANKFLAKIASDWNKPDGQFSLPPQKSEAFLATLPLGKIPGV-GKVTLQK 192
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ 110
+ LG++T GDL +FS +L +G G L+++ARG V+
Sbjct: 193 MHRLGLSTAGDLRRFSRGELANLFG-KWGYRLYDLARGTDNRPVK 236
>gi|296314223|ref|ZP_06864164.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
gi|296839124|gb|EFH23062.1| DNA-directed DNA polymerase [Neisseria polysaccharea ATCC 43768]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPQKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|261377452|ref|ZP_05982025.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
gi|269146178|gb|EEZ72596.1| DNA-directed DNA polymerase [Neisseria cinerea ATCC 14685]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|126435694|ref|YP_001071385.1| DNA polymerase IV [Mycobacterium sp. JLS]
gi|126235494|gb|ABN98894.1| DNA-directed DNA polymerase [Mycobacterium sp. JLS]
Length = 452
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+VL+ET S G K +AK+ASG+ KP V + + LLDSL ++K+ + G +
Sbjct: 130 RVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLWGI-GPV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ T+G L SE ++ + G G L +ARGI V R K +
Sbjct: 189 AEDRLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDDRPVAERAEAKQISAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 176
+FP L T+ V+ + + + RL D R A T+T+ K SD
Sbjct: 249 STFPA--DLITLDQVREAIGPIADHAHRRLAKD----GRGARTVTVK---LKKSD 294
>gi|399926725|ref|ZP_10784083.1| DNA polymerase IV, damage-inducible protein DinB [Myroides
injenensis M09-0166]
Length = 347
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + + T SAGI+ NK LAK+AS NKP Q T+ V L++L IKK +G K
Sbjct: 120 KIYERLQLTASAGISINKFLAKIASDYNKPNGQKTINPDEVIEFLENLEIKKFFGIGKKT 179
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ + G+ T DL + S D L +G GT +NI RG+ VQ KS G+
Sbjct: 180 AEKMYH-FGIFTGKDLKEKSLDFLVTHFG-KAGTDYYNIVRGVHESPVQPNRKIKSVGTE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F L + + L+ + EEL RL K I TL L S F
Sbjct: 238 RTF--DENLSSEVFLMERLDLIVEELGLRLKKQNVAGKTI--TLKLKYSDF 284
>gi|319651459|ref|ZP_08005587.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
gi|317396774|gb|EFV77484.1| DNA polymerase IV [Bacillus sp. 2_A_57_CT2]
Length = 438
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ ++ + CS G+A NK LAK+AS M KP T + V +L + +++M +G K
Sbjct: 145 QIFQQLDLPCSIGVAPNKFLAKMASDMKKPMGITVLRKRDVPHILWPMQVEEMHGVGKKT 204
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G L+N L + T+G+L K E L+ + G N G L A G +V P+S
Sbjct: 205 GEKLRN-LNIATIGELAKADEIVLKAALGIN-GPRLKQKANGQDLRKVD----PESASEF 258
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
KS L S Q L Q+ E+LS ++ S L++ K +A +L +
Sbjct: 259 KSVGNSTTLPRDVSNQRELLQVFEKLSSQVSSRLKRKKVMAVSLGI 304
>gi|227891160|ref|ZP_04008965.1| DNA polymerase IV [Lactobacillus salivarius ATCC 11741]
gi|227867034|gb|EEJ74455.1| DNA polymerase IV [Lactobacillus salivarius ATCC 11741]
Length = 357
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 4/148 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T+ TCS G+++NK LAKLAS +KP T V V+ L ++PIKK + +G K
Sbjct: 133 EIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFNMPIKKFRGVGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ E G+ DL E L +G G L+ RGI V+ + KS G
Sbjct: 193 LPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRPVEWKRERKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSE 149
++F P LKTV V L + +L +
Sbjct: 251 RTFDQP--LKTVEEVDSQLRLIATKLVD 276
>gi|167771592|ref|ZP_02443645.1| hypothetical protein ANACOL_02964 [Anaerotruncus colihominis DSM
17241]
gi|167666232|gb|EDS10362.1| ImpB/MucB/SamB family protein [Anaerotruncus colihominis DSM 17241]
Length = 415
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T S G++ NK+ AKL S +NKP T + + K + LP+K + + G+
Sbjct: 134 RIKEELGITASVGVSFNKVFAKLGSDLNKPDGMTVIAYDGFKEQVWPLPVKTLLYV-GRA 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQ---ARLLPKSH 118
T G+TT+G L + L+ +G G LW A G+ V A+ L KS
Sbjct: 193 TTGKLKSYGITTIGALAQAPITFLEHRFG-KIGRMLWMFANGLDTSPVSNIGAKSLIKSI 251
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 178
G+ + PR L T ++ L LCE +S RL + K +A LT+ S+ S +
Sbjct: 252 GNSTT--APRDLITDQEIKITLYALCESISARLREHSFRCKTVA--LTIRDSSLTSFERQ 307
Query: 179 SRKKFPS 185
K PS
Sbjct: 308 LALKRPS 314
>gi|59801155|ref|YP_207867.1| DNA polymerase IV [Neisseria gonorrhoeae FA 1090]
gi|240014082|ref|ZP_04720995.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
DGI18]
gi|240016516|ref|ZP_04723056.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
FA6140]
gi|240121643|ref|ZP_04734605.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae
PID24-1]
gi|268599074|ref|ZP_06133241.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268684378|ref|ZP_06151240.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268686699|ref|ZP_06153561.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|293399022|ref|ZP_06643187.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
gi|75432500|sp|Q5F8N2.1|DPO4_NEIG1 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|59718050|gb|AAW89455.1| putative DNA-damage-inducibile protein [Neisseria gonorrhoeae FA
1090]
gi|268583205|gb|EEZ47881.1| impB/mucB/samB family protein [Neisseria gonorrhoeae MS11]
gi|268624662|gb|EEZ57062.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-92-679]
gi|268626983|gb|EEZ59383.1| impB/mucB/samB family protein [Neisseria gonorrhoeae SK-93-1035]
gi|291610436|gb|EFF39546.1| DNA polymerase IV [Neisseria gonorrhoeae F62]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPG-AGKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLARGTDEHPVKA 237
>gi|421544771|ref|ZP_15990844.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|421546859|ref|ZP_15992901.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|421549106|ref|ZP_15995128.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|421553074|ref|ZP_15999043.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|421559533|ref|ZP_16005406.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|433537101|ref|ZP_20493603.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
gi|402322503|gb|EJU57961.1| DNA polymerase IV [Neisseria meningitidis NM183]
gi|402322684|gb|EJU58135.1| DNA polymerase IV [Neisseria meningitidis NM140]
gi|402324927|gb|EJU60349.1| DNA polymerase IV [Neisseria meningitidis NM2781]
gi|402329587|gb|EJU64947.1| DNA polymerase IV [Neisseria meningitidis NM576]
gi|402335332|gb|EJU70598.1| DNA polymerase IV [Neisseria meningitidis 92045]
gi|432272862|gb|ELL27967.1| impB/mucB/samB family protein [Neisseria meningitidis 77221]
Length = 352
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPYKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ARG V+A
Sbjct: 190 LKKMQSLGMQTAGDLRRFDRGELLNHFG-RYGYRLYDLARGTDERPVKA 237
>gi|257090993|ref|ZP_05585354.1| DNA-directed DNA polymerase [Enterococcus faecalis CH188]
gi|312902579|ref|ZP_07761785.1| DNA polymerase IV [Enterococcus faecalis TX0635]
gi|422687234|ref|ZP_16745416.1| DNA polymerase IV [Enterococcus faecalis TX0630]
gi|256999805|gb|EEU86325.1| DNA-directed DNA polymerase [Enterococcus faecalis CH188]
gi|310634249|gb|EFQ17532.1| DNA polymerase IV [Enterococcus faecalis TX0635]
gi|315579611|gb|EFU91802.1| DNA polymerase IV [Enterococcus faecalis TX0630]
Length = 372
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P ++ + Q L QL + ER ++++ + T+ L + R P
Sbjct: 267 TPLTMEEQVTAQ--LRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|167038401|ref|YP_001665979.1| DNA polymerase IV [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|167038865|ref|YP_001661850.1| DNA polymerase IV [Thermoanaerobacter sp. X514]
gi|256751141|ref|ZP_05492023.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300913550|ref|ZP_07130867.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307723435|ref|YP_003903186.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|320116805|ref|YP_004186964.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853105|gb|ABY91514.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514]
gi|166857235|gb|ABY95643.1| DNA-directed DNA polymerase [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|256750047|gb|EEU63069.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus CCSD1]
gi|300890235|gb|EFK85380.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561]
gi|307580496|gb|ADN53895.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513]
gi|319929896|gb|ADV80581.1| DNA-directed DNA polymerase [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 16/203 (7%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T T SAG+++NK LAKLAS NKP + + +L LP+ K+ +G K
Sbjct: 126 KVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSKVYGIGQKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L++ +G+ T+GDLLK S++ L E +G G ++ RGI V+ KS G
Sbjct: 186 EERLKS-MGINTIGDLLKLSQENLVEIFG-KVGVEIYLRIRGIDERPVETMREIKSIGKE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
K+ L+ + L + + S+ + +L + + A T+T+ K+SD
Sbjct: 244 KT------LEKDTKDKKLLLRYAKLFSDIISEELFRERLYARTVTVK---IKTSDFTVHT 294
Query: 182 KFPSKSCPLRYGTAKIQEDTFNL 204
K + + +R G ED +++
Sbjct: 295 KSKTLNKYIRLG-----EDIYDV 312
>gi|375012202|ref|YP_004989190.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
gi|359348126|gb|AEV32545.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Owenweeksia hongkongensis DSM 17368]
Length = 361
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET+ + SAGI+ NK +AK+AS +NKP Q T+ V L++LPIKK +G K
Sbjct: 134 RIWEETQLSASAGISINKFVAKVASDINKPNGQKTIMPDDVIPFLENLPIKKFYGIGEKT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ +LG+ DL ++ L +G +GT +NI RG+ V+ + KS G+
Sbjct: 194 AEKMK-KLGIHFGRDLKQWDLPLLVREFG-KSGTHYYNIVRGLQKSTVKPDRIRKSIGAE 251
Query: 122 KSF 124
++F
Sbjct: 252 RTF 254
>gi|257084280|ref|ZP_05578641.1| DNA-directed DNA polymerase [Enterococcus faecalis Fly1]
gi|256992310|gb|EEU79612.1| DNA-directed DNA polymerase [Enterococcus faecalis Fly1]
Length = 372
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDVLGLEQ-GIR 347
>gi|357637556|ref|ZP_09135431.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
gi|357586010|gb|EHJ53213.1| DNA polymerase IV [Streptococcus macacae NCTC 11558]
Length = 368
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ KE TCSAG+++NK LAKLAS KP T + K L SLPI+K +G +
Sbjct: 143 IWKELHLTCSAGVSYNKFLAKLASDYEKPHGLTVILPEEAKTFLSSLPIEKFHGVGKRSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L + +GV T DL + E L + +G G L+ ARGIS V++ + KS G+ +
Sbjct: 203 EKLHH-MGVFTGKDLQEIPEMTLIDLFG-RFGFDLYRKARGISNSPVKSHRIRKSIGNER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>gi|417412383|gb|JAA52580.1| Putative dna polymerase iota/dna damage inducible protein, partial
[Desmodus rotundus]
Length = 703
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQN 67
T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IKKM +G K L+
Sbjct: 181 LTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESSQDLIHSLKHIKKMPGIGYKTARRLE- 239
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LGV++V DL FS L++ G + + ++ G V LP+S SF
Sbjct: 240 ALGVSSVQDLQTFSSKVLEKELGISVAQRIQKLSFGEDNSPVTPSGLPQSFSEEDSF--- 296
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
+ + + + +L L R+C Q+ R HT+ L S R+ S+
Sbjct: 297 KKCSSEVEAKSKIEELLASLLNRVC----QDGRKPHTVRLTIRRCSSERHCGRE---SRQ 349
Query: 188 CPL 190
CP+
Sbjct: 350 CPV 352
>gi|344167777|emb|CCA80020.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [blood disease bacterium R229]
Length = 318
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 90 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAALPVERLFGV-GKV 148
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI +VQ + KS
Sbjct: 149 TAAKLRRLGAQTCGDLRGWGADRLQQHFG-SFGFRLHDLCRGIDHRQVQPSQIRKSVSVE 207
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L ++L+ R+
Sbjct: 208 ETYATD--LRTLDDCQRELTILVDQLAARV 235
>gi|327312331|ref|YP_004327768.1| DNA polymerase IV [Prevotella denticola F0289]
gi|326945721|gb|AEA21606.1| DNA polymerase IV [Prevotella denticola F0289]
Length = 359
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L T T SAGI++NK+LAK++S M KP TV G + SLP++K+ +G K
Sbjct: 128 KILDRTSLTASAGISYNKLLAKISSDMRKPDGLFTVHPDRALGFVGSLPVEKLWGVGPKT 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +++GV T G L + S L + +G G ++ +RGI V A KS G
Sbjct: 188 AKRM-HDMGVFTGGQLRQVSRRHLVQVFG-KMGNIYYDFSRGIDNRPVVAVHERKSVGCE 245
Query: 122 KSFPGPRAL--KTVASVQHWLNQLCEELS 148
++F + K + + H + +L E L+
Sbjct: 246 RTFLEDLHVGSKIIIELYHIVLELVERLA 274
>gi|373465649|ref|ZP_09557104.1| putative DNA polymerase IV [Lactobacillus kisonensis F0435]
gi|371759899|gb|EHO48606.1| putative DNA polymerase IV [Lactobacillus kisonensis F0435]
Length = 368
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 1 MQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
+ + +ET TCS G+++NK LAK AS KP T + L LPI+K + +G K
Sbjct: 137 IAIWEETRLTCSVGVSYNKFLAKEASDYAKPVGITVIDQRDAIEFLKKLPIEKFRGVGKK 196
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
++ L + DLLK+S+ L + +G G L+ ARG+ V+ + + KS G
Sbjct: 197 TAPKME-ALKIANGADLLKWSQMDLIKHFG-KFGYVLYERARGVDPRPVEYQRIRKSIGK 254
Query: 121 GKSFPGPRALKTVASVQHWLNQLCE 145
++F GP + T A V L ++ +
Sbjct: 255 ERTF-GPE-ISTAAEVDSQLQRIAQ 277
>gi|345016684|ref|YP_004819037.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032027|gb|AEM77753.1| DNA polymerase IV [Thermoanaerobacter wiegelii Rt8.B1]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T T SAG+++NK LAKLAS NKP + + +L LP+ K+ +G K
Sbjct: 126 KVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSKVYGIGEKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ +G+ T+ DLLK S++ L E +G G ++N RGI V+ KS G
Sbjct: 186 EQKLKA-MGINTIDDLLKLSQESLIEIFG-KLGLEIYNRIRGIDERPVETMREIKSIGKE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
K+ + K + H++ + +SE L + + A T+T+
Sbjct: 244 KTL--EKDTKDKKLLLHYVKLFSDIISEELV----RERLYARTVTV 283
>gi|320528393|ref|ZP_08029555.1| putative DNA polymerase IV [Solobacterium moorei F0204]
gi|320131307|gb|EFW23875.1| putative DNA polymerase IV [Solobacterium moorei F0204]
Length = 396
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ E TCS G+A N LAK+AS M KP T + V+ + LPIK M+ +G K
Sbjct: 129 QIYNELGLTCSIGVAPNMFLAKMASDMKKPNGITVLRIRDVQEKMWPLPIKDMRGIGNKT 188
Query: 62 GTSLQNELGVTTVGDLLKFSE-DKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+Q E+GV T+GDL + + KL+E G NT ++ A GI E++ KS G
Sbjct: 189 VPYMQ-EIGVQTIGDLANYKDIAKLRELLGKNTDDYI-ERANGIDHRELETEWDAKSMGI 246
Query: 121 GKSF 124
++
Sbjct: 247 SETL 250
>gi|452818943|gb|EME26075.1| DNA polymerase kappa subunit [Galdieria sulphuraria]
Length = 537
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 15/222 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTV--PFSSVKGLLDSLPIKKMKQLGGK 60
+ + T TCSAG+A N M+AK+A+ +NKP QT V ++ L+ L ++K+ + G+
Sbjct: 215 IFENTGITCSAGVASNTMIAKIATDLNKPNGQTIVQPDMVCIQNFLNPLSVRKIPGV-GR 273
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ L + L + + D++ L T +L A GI+ + S
Sbjct: 274 VTEKLLSSLNIFCIQDIIS-HRSVLFHCMRRKTFEFLLQSALGIAPAFIC------ESES 326
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSR 180
K R K +S++ L ++CE +S+ L DLE A TLTL K SD R
Sbjct: 327 RKGMSRERTFKPTSSLEE-LRKICESVSKLLADDLEAEDMYAKTLTLK---IKCSDFSVR 382
Query: 181 KKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG 222
+ +K C Y +I E+ + L + + GV+ G
Sbjct: 383 TRAVTK-CFFIYRYEQILENAWKLLLKEMPIEIRLLGVRANG 423
>gi|430826869|ref|ZP_19445038.1| DNA polymerase IV [Enterococcus faecium E0164]
gi|430444618|gb|ELA54453.1| DNA polymerase IV [Enterococcus faecium E0164]
Length = 372
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 4/145 (2%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K + GK
Sbjct: 148 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGV-GKRTVPRM 206
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 207 HELGIYTGKDLYECTEMILIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 265
Query: 127 PRALKTVASVQHWLNQLCEELSERL 151
P L+T +V L QL E++ E L
Sbjct: 266 P--LQTEEAVLTQLRQLAEKVEEAL 288
>gi|326389369|ref|ZP_08210937.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392939169|ref|ZP_10304813.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
gi|325994732|gb|EGD53156.1| DNA-directed DNA polymerase [Thermoanaerobacter ethanolicus JW 200]
gi|392290919|gb|EIV99362.1| LOW QUALITY PROTEIN: nucleotidyltransferase/DNA polymerase involved
in DNA repair [Thermoanaerobacter siderophilus SR4]
Length = 389
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V + T T SAG+++NK LAKLAS NKP + + +L LP+ K+ +G K
Sbjct: 126 KVKETTGLTISAGVSYNKFLAKLASDWNKPDGFMVITEDMIPDILKPLPVSKVYGIGEKS 185
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ +G+ T+ DLLK S++ L E +G G ++N RGI V+ KS G
Sbjct: 186 EQKLKA-MGINTIDDLLKLSQESLIEIFG-KLGLEIYNRIRGIDERPVETMREIKSIGKE 243
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
K+ + K + H++ + +SE L + + A T+T+
Sbjct: 244 KTL--EKDTKDKKLLLHYVKLFSDIISEELV----RERLYARTVTV 283
>gi|257876803|ref|ZP_05656456.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC20]
gi|257810969|gb|EEV39789.1| DNA directed DNA polymerase [Enterococcus casseliflavus EC20]
Length = 374
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET TCSAG+++NK LAKL+S +KP T V L LPI K +G K
Sbjct: 145 IWQETHLTCSAGVSYNKFLAKLSSDYHKPRGLTVVMPDEAVAFLQQLPIDKFHGIGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL +SE L +G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIFTGADLYGWSEMALIREFG-KMGYSLYRKVRGIHDSPVSVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P + S + L+QL ++E + L++ ++ T+ L S R
Sbjct: 263 TYGNP-----LTSEEQVLSQL-RAIAEEVERSLKRTQKHGKTVVLKVRYSDYSTITKRVT 316
Query: 183 FP 184
P
Sbjct: 317 LP 318
>gi|325270034|ref|ZP_08136642.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
gi|324987619|gb|EGC19594.1| DNA-directed DNA polymerase IV [Prevotella multiformis DSM 16608]
Length = 364
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L T T SAG+++NK+LAK++S M KP TV G + SLP++K+ +G K
Sbjct: 128 KILDRTSLTASAGVSYNKLLAKISSDMRKPDGLFTVHPDRALGFIGSLPVEKLWGIGPKT 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ +++GV T G L + S L + +G G ++ +RGI V A KS G
Sbjct: 188 AKRM-HDMGVFTGGQLRQVSRRHLVQVFG-KMGHVYYDFSRGIDNRRVVAFHERKSVGCE 245
Query: 122 KSFPGPRAL--KTVASVQHWLNQLCEELS 148
++F + K + + H + +L E L+
Sbjct: 246 RTFLEDIHVESKIIIELYHIVLELVERLA 274
>gi|90962137|ref|YP_536053.1| DNA polymerase IV [Lactobacillus salivarius UCC118]
gi|301301263|ref|ZP_07207418.1| DNA polymerase IV [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821331|gb|ABD99970.1| DNA polymerase IV [Lactobacillus salivarius UCC118]
gi|300851139|gb|EFK78868.1| DNA polymerase IV [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 357
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T+ TCS G+++NK LAKLAS +KP T V V+ L ++PIKK + +G K
Sbjct: 133 EIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFNMPIKKFRGVGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ E G+ DL E L +G G L+ RGI V+ + KS G
Sbjct: 193 LPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRPVEWKRERKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
++F P LKTV V L + +L
Sbjct: 251 RTFDQP--LKTVEEVDSQLRLIATKL 274
>gi|387131110|ref|YP_006294000.1| DNA polymerase IV [Methylophaga sp. JAM7]
gi|386272399|gb|AFJ03313.1| DNA polymerase IV [Methylophaga sp. JAM7]
Length = 362
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+LKET T SAG+++NK LAK+AS M+KP + + +++LP+ K +G
Sbjct: 133 ILKETRLTASAGVSYNKFLAKIASDMDKPNGLYVIRPERGEKFVETLPVGKFHGIGPATE 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ +LG+ T DL + +L E +G G + +NIAR I V++ KS G
Sbjct: 193 AKMK-QLGIETGLDLRNKTLAQLTERFG-KAGHYYFNIARAIDERPVRSSRTRKSLGKET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F + + SV +L +L+E + L + K A T+T+
Sbjct: 251 TFA-----QDITSVTELTTKLL-DLAEIVLESLAKQKLNARTVTV 289
>gi|418961661|ref|ZP_13513546.1| DNA polymerase IV [Lactobacillus salivarius SMXD51]
gi|380343756|gb|EIA32104.1| DNA polymerase IV [Lactobacillus salivarius SMXD51]
Length = 357
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T+ TCS G+++NK LAKLAS +KP T V V+ L ++PIKK + +G K
Sbjct: 133 EIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFNMPIKKFRGVGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ E G+ DL E L +G G L+ RGI V+ + KS G
Sbjct: 193 LPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRPVEWKRERKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
++F P LKTV V L + +L
Sbjct: 251 RTFDQP--LKTVEEVDSQLRLIATKL 274
>gi|420264317|ref|ZP_14766950.1| DNA-directed DNA polymerase IV [Enterococcus sp. C1]
gi|394768693|gb|EJF48599.1| DNA-directed DNA polymerase IV [Enterococcus sp. C1]
Length = 374
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 8/182 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET TCSAG+++NK LAKL+S +KP T V L LPI K +G K
Sbjct: 145 IWHETHLTCSAGVSYNKFLAKLSSDYHKPRGLTVVMPDEAVAFLQQLPIDKFHGIGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL +SE L +G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIFTGADLYAWSEMALIREFG-KMGYSLYRKVRGIHDSPVSVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P + S + L+QL ++E + L++ ++ T+ L S R
Sbjct: 263 TYGNP-----LTSEERVLSQL-RAIAEEVERSLKRTQKHGKTVVLKVRYSDYSTITKRVT 316
Query: 183 FP 184
P
Sbjct: 317 LP 318
>gi|312378180|gb|EFR24822.1| hypothetical protein AND_10339 [Anopheles darlingi]
Length = 825
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKL 61
+ +E C AGIAHNK+LAKL MNKP +QT + ++ + SL ++ + +G K
Sbjct: 265 IFRELGLRCCAGIAHNKLLAKLVGAMNKPNKQTVLLPTASSSFVASLGCVRSLTGIGEKT 324
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+L VTTV DL + ++L G L IA G V+ PKS G
Sbjct: 325 AQTLAECCNVTTVTDLQQIELERLARHVGHEQAVRLKQIALGRDDTPVRQTGKPKSVGLE 384
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSS 175
S P SV+ + L RL ++ ++ R+ + + F S+
Sbjct: 385 DSCPA-------ISVRADAEEKFRHLLVRLVKNIAEDGRVPIAIKVTVRKFDST 431
>gi|145523365|ref|XP_001447521.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415032|emb|CAK80124.1| unnamed protein product [Paramecium tetraurelia]
Length = 521
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 9/169 (5%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET++ CSAGI+ NKMLAKLAS NKP +QT + + + ++ I K++ GGK+
Sbjct: 186 IYTETKYKCSAGISFNKMLAKLASATNKPNKQTIILECMLPECISNIGINKIRGFGGKVQ 245
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L E G+ TVG S +LQ +G + ++++ RG E V+ + K+ K
Sbjct: 246 EALL-ESGLKTVGQAQTLSIYELQSLFG-DKAQYIYDKLRGYDDEIVKKEVDLKN----K 299
Query: 123 SFPGPRALKTVAS---VQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
S + +K +S + L + +++ R+ E + + L +H
Sbjct: 300 SILSLKNIKKTSSREVIIQSLELILHDITMRVTDYYEDSNLVPSVLVIH 348
>gi|82702078|ref|YP_411644.1| DNA-directed DNA polymerase [Nitrosospira multiformis ATCC 25196]
gi|82410143|gb|ABB74252.1| DNA-directed DNA polymerase [Nitrosospira multiformis ATCC 25196]
Length = 385
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 2 QVLKE-TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
Q ++E T +CS G+A NK+LAK+ S + KP T + + V + LP++K+ +G K
Sbjct: 145 QAVRESTGLSCSIGVAPNKLLAKICSDLEKPDGLTLLSMADVPARIWPLPVRKINGIGPK 204
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
L G+ T+GDL + LQ +G + G WL+ +RGI V P+S
Sbjct: 205 ANQKLAAS-GIFTIGDLAQVDIAFLQARFGRSNGCWLYEASRGIDERSVVTHAEPRSISR 263
Query: 121 GKSF 124
+F
Sbjct: 264 ETTF 267
>gi|392329945|ref|ZP_10274561.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
gi|391419817|gb|EIQ82628.1| DNA polymerase IV [Streptococcus canis FSL Z3-227]
Length = 364
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 QEVGLTCSAGVSYNKFLAKLASDFEKPRGLTLVLPQDALSFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISHSPVKPDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+++K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQEHKKLGKTVVL 299
>gi|378827935|ref|YP_005190667.1| DNA polymerase IV [Sinorhizobium fredii HH103]
gi|365180987|emb|CCE97842.1| DNA polymerase IV [Sinorhizobium fredii HH103]
Length = 371
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T SAGI++NK LAK+AS +NKP Q + + + ++++P+KK +G +
Sbjct: 150 TGLNASAGISYNKFLAKMASDLNKPNGQAVITPKNGQAFVEAVPVKKFHGVGPATAEKM- 208
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ T DL +++ L E +G +G + + IARGI EV+ + KS G+ +F
Sbjct: 209 HRLGIETGADLKGKTQEFLVEHFG-KSGPYFYGIARGIDNREVKPDRVRKSVGAEDTF 265
>gi|325570719|ref|ZP_08146445.1| DNA-directed DNA polymerase IV [Enterococcus casseliflavus ATCC
12755]
gi|325156565|gb|EGC68745.1| DNA-directed DNA polymerase IV [Enterococcus casseliflavus ATCC
12755]
Length = 374
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 8/182 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET TCSAG+++NK LAKL+S +KP T V L LPI K +G K
Sbjct: 145 IWHETHLTCSAGVSYNKFLAKLSSDYHKPRGLTVVMPDEAVAFLQQLPIDKFHGIGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ T DL +SE L +G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIFTGADLYAWSEMALIREFG-KMGYSLYRKVRGIHDSPVSVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ P + S + L+QL ++E + L++ ++ T+ L S R
Sbjct: 263 TYGNP-----LTSEEQVLSQL-RAIAEEVERSLKRTQKHGKTVVLKVRYSDYSTITKRVT 316
Query: 183 FP 184
P
Sbjct: 317 LP 318
>gi|209882993|ref|XP_002142930.1| DNA polymerase eta [Cryptosporidium muris RN66]
gi|209558536|gb|EEA08581.1| DNA polymerase eta, putative [Cryptosporidium muris RN66]
Length = 717
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L++ +TCSAGI+ NKMLAKL + KP Q+ + + + LPI K++ LGGKL
Sbjct: 311 RLLQDLNYTCSAGISINKMLAKLVCSLRKPNGQSVLLSRWINQYMGILPILKLRLLGGKL 370
Query: 62 GTSLQNELGVTTV-GDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
G + +L + + DLL++++ L + +G G +L+N RGI E V +S S
Sbjct: 371 GKLVSEKLPMVRMSSDLLQYNKGTLIKLFGEKNGEYLYNTCRGIDLEAVIETQHYRSILS 430
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSER 150
K+F L + + WL+ ELSER
Sbjct: 431 SKNFYS--GLDNLDEIFKWLHIFSSELSER 458
>gi|94995023|ref|YP_603121.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
gi|189044613|sp|Q1J509.1|DPO4_STRPF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|94548531|gb|ABF38577.1| DNA polymerase IV [Streptococcus pyogenes MGAS10750]
Length = 364
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 100/215 (46%), Gaps = 24/215 (11%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK L KLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLGKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
A + + + E+S +R+ + L+ +K++ T+ L + R
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVLKVRYADFTTLTKRV 313
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQ------AGLR 210
P L A+I++ ++F AG+R
Sbjct: 314 TLPE----LTRNAAQIEQVAGDIFDSLSENPAGIR 344
>gi|430370822|ref|ZP_19429229.1| DNA-damage-inducible protein P [Enterococcus faecalis M7]
gi|429515187|gb|ELA04705.1| DNA-damage-inducible protein P [Enterococcus faecalis M7]
Length = 351
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 128 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 187
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 188 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 245
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 246 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 299
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 300 YISKKEELFYQANLIWEDILGLEQ-GIR 326
>gi|29377230|ref|NP_816384.1| DNA-damage-inducible protein P [Enterococcus faecalis V583]
gi|227519461|ref|ZP_03949510.1| DNA-damage-inducible protein P [Enterococcus faecalis TX0104]
gi|227554239|ref|ZP_03984286.1| DNA-damage-inducible protein P [Enterococcus faecalis HH22]
gi|229544862|ref|ZP_04433587.1| DNA-damage-inducible protein P [Enterococcus faecalis TX1322]
gi|256616743|ref|ZP_05473589.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256763377|ref|ZP_05503957.1| DNA-directed DNA polymerase [Enterococcus faecalis T3]
gi|256854051|ref|ZP_05559416.1| DNA-damage-inducible protein P [Enterococcus faecalis T8]
gi|256957982|ref|ZP_05562153.1| DNA-directed DNA polymerase [Enterococcus faecalis DS5]
gi|256960999|ref|ZP_05565170.1| DNA-directed DNA polymerase [Enterococcus faecalis Merz96]
gi|257079919|ref|ZP_05574280.1| DNA-directed DNA polymerase [Enterococcus faecalis JH1]
gi|257081683|ref|ZP_05576044.1| DNA-directed DNA polymerase [Enterococcus faecalis E1Sol]
gi|257087721|ref|ZP_05582082.1| DNA-directed DNA polymerase [Enterococcus faecalis D6]
gi|257416924|ref|ZP_05593918.1| DNA-directed DNA polymerase [Enterococcus faecalis ARO1/DG]
gi|257420143|ref|ZP_05597137.1| DNA-directed DNA polymerase [Enterococcus faecalis T11]
gi|293384615|ref|ZP_06630480.1| DNA polymerase IV [Enterococcus faecalis R712]
gi|293386754|ref|ZP_06631325.1| DNA polymerase IV [Enterococcus faecalis S613]
gi|294779722|ref|ZP_06745110.1| DNA polymerase IV [Enterococcus faecalis PC1.1]
gi|307269215|ref|ZP_07550569.1| DNA polymerase IV [Enterococcus faecalis TX4248]
gi|307276992|ref|ZP_07558102.1| DNA polymerase IV [Enterococcus faecalis TX2134]
gi|307288626|ref|ZP_07568607.1| DNA polymerase IV [Enterococcus faecalis TX0109]
gi|312906439|ref|ZP_07765447.1| DNA polymerase IV [Enterococcus faecalis DAPTO 512]
gi|312979403|ref|ZP_07791091.1| DNA polymerase IV [Enterococcus faecalis DAPTO 516]
gi|384519544|ref|YP_005706849.1| DNA polymerase IV [Enterococcus faecalis 62]
gi|397700941|ref|YP_006538729.1| DNA polymerase IV [Enterococcus faecalis D32]
gi|421513255|ref|ZP_15960034.1| DNA polymerase IV [Enterococcus faecalis ATCC 29212]
gi|422684813|ref|ZP_16743038.1| DNA polymerase IV [Enterococcus faecalis TX4000]
gi|422694042|ref|ZP_16752047.1| DNA polymerase IV [Enterococcus faecalis TX4244]
gi|422703223|ref|ZP_16761048.1| DNA polymerase IV [Enterococcus faecalis TX1302]
gi|422710907|ref|ZP_16767842.1| DNA polymerase IV [Enterococcus faecalis TX0027]
gi|422720156|ref|ZP_16776779.1| DNA polymerase IV [Enterococcus faecalis TX0017]
gi|422724471|ref|ZP_16780947.1| DNA polymerase IV [Enterococcus faecalis TX2137]
gi|422727724|ref|ZP_16784155.1| DNA polymerase IV [Enterococcus faecalis TX0012]
gi|422734506|ref|ZP_16790795.1| DNA polymerase IV [Enterococcus faecalis TX1341]
gi|422741427|ref|ZP_16795452.1| DNA polymerase IV [Enterococcus faecalis TX2141]
gi|422867504|ref|ZP_16914082.1| putative DNA polymerase IV [Enterococcus faecalis TX1467]
gi|424672063|ref|ZP_18109044.1| putative DNA polymerase IV [Enterococcus faecalis 599]
gi|424677197|ref|ZP_18114056.1| putative DNA polymerase IV [Enterococcus faecalis ERV103]
gi|424679222|ref|ZP_18116050.1| putative DNA polymerase IV [Enterococcus faecalis ERV116]
gi|424682463|ref|ZP_18119233.1| putative DNA polymerase IV [Enterococcus faecalis ERV129]
gi|424686022|ref|ZP_18122695.1| putative DNA polymerase IV [Enterococcus faecalis ERV25]
gi|424689027|ref|ZP_18125621.1| putative DNA polymerase IV [Enterococcus faecalis ERV31]
gi|424692639|ref|ZP_18129122.1| putative DNA polymerase IV [Enterococcus faecalis ERV37]
gi|424695870|ref|ZP_18132242.1| putative DNA polymerase IV [Enterococcus faecalis ERV41]
gi|424699061|ref|ZP_18135301.1| putative DNA polymerase IV [Enterococcus faecalis ERV62]
gi|424702678|ref|ZP_18138825.1| putative DNA polymerase IV [Enterococcus faecalis ERV63]
gi|424705820|ref|ZP_18141842.1| putative DNA polymerase IV [Enterococcus faecalis ERV65]
gi|424716080|ref|ZP_18145397.1| putative DNA polymerase IV [Enterococcus faecalis ERV68]
gi|424719259|ref|ZP_18148435.1| putative DNA polymerase IV [Enterococcus faecalis ERV72]
gi|424724446|ref|ZP_18153392.1| putative DNA polymerase IV [Enterococcus faecalis ERV73]
gi|424726213|ref|ZP_18154887.1| putative DNA polymerase IV [Enterococcus faecalis ERV81]
gi|424734622|ref|ZP_18163117.1| putative DNA polymerase IV [Enterococcus faecalis ERV85]
gi|424746759|ref|ZP_18174980.1| putative DNA polymerase IV [Enterococcus faecalis ERV93]
gi|424756742|ref|ZP_18184544.1| putative DNA polymerase IV [Enterococcus faecalis R508]
gi|428767901|ref|YP_007154012.1| DNA-damage-inducible protein P [Enterococcus faecalis str.
Symbioflor 1]
gi|430359071|ref|ZP_19425687.1| DNA-damage-inducible protein P [Enterococcus faecalis OG1X]
gi|29344696|gb|AAO82454.1| DNA-damage-inducible protein P [Enterococcus faecalis V583]
gi|227073073|gb|EEI11036.1| DNA-damage-inducible protein P [Enterococcus faecalis TX0104]
gi|227176639|gb|EEI57611.1| DNA-damage-inducible protein P [Enterococcus faecalis HH22]
gi|229310030|gb|EEN76017.1| DNA-damage-inducible protein P [Enterococcus faecalis TX1322]
gi|256596270|gb|EEU15446.1| DNA-directed DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256684628|gb|EEU24323.1| DNA-directed DNA polymerase [Enterococcus faecalis T3]
gi|256710994|gb|EEU26037.1| DNA-damage-inducible protein P [Enterococcus faecalis T8]
gi|256948478|gb|EEU65110.1| DNA-directed DNA polymerase [Enterococcus faecalis DS5]
gi|256951495|gb|EEU68127.1| DNA-directed DNA polymerase [Enterococcus faecalis Merz96]
gi|256987949|gb|EEU75251.1| DNA-directed DNA polymerase [Enterococcus faecalis JH1]
gi|256989713|gb|EEU77015.1| DNA-directed DNA polymerase [Enterococcus faecalis E1Sol]
gi|256995751|gb|EEU83053.1| DNA-directed DNA polymerase [Enterococcus faecalis D6]
gi|257158752|gb|EEU88712.1| DNA-directed DNA polymerase [Enterococcus faecalis ARO1/DG]
gi|257161971|gb|EEU91931.1| DNA-directed DNA polymerase [Enterococcus faecalis T11]
gi|291078073|gb|EFE15437.1| DNA polymerase IV [Enterococcus faecalis R712]
gi|291083757|gb|EFE20720.1| DNA polymerase IV [Enterococcus faecalis S613]
gi|294453213|gb|EFG21627.1| DNA polymerase IV [Enterococcus faecalis PC1.1]
gi|306500380|gb|EFM69716.1| DNA polymerase IV [Enterococcus faecalis TX0109]
gi|306506415|gb|EFM75575.1| DNA polymerase IV [Enterococcus faecalis TX2134]
gi|306514434|gb|EFM82995.1| DNA polymerase IV [Enterococcus faecalis TX4248]
gi|310627593|gb|EFQ10876.1| DNA polymerase IV [Enterococcus faecalis DAPTO 512]
gi|311287774|gb|EFQ66330.1| DNA polymerase IV [Enterococcus faecalis DAPTO 516]
gi|315025478|gb|EFT37410.1| DNA polymerase IV [Enterococcus faecalis TX2137]
gi|315030424|gb|EFT42356.1| DNA polymerase IV [Enterococcus faecalis TX4000]
gi|315032606|gb|EFT44538.1| DNA polymerase IV [Enterococcus faecalis TX0017]
gi|315035127|gb|EFT47059.1| DNA polymerase IV [Enterococcus faecalis TX0027]
gi|315143851|gb|EFT87867.1| DNA polymerase IV [Enterococcus faecalis TX2141]
gi|315148717|gb|EFT92733.1| DNA polymerase IV [Enterococcus faecalis TX4244]
gi|315151790|gb|EFT95806.1| DNA polymerase IV [Enterococcus faecalis TX0012]
gi|315165323|gb|EFU09340.1| DNA polymerase IV [Enterococcus faecalis TX1302]
gi|315168737|gb|EFU12754.1| DNA polymerase IV [Enterococcus faecalis TX1341]
gi|323481677|gb|ADX81116.1| DNA polymerase IV [Enterococcus faecalis 62]
gi|329577343|gb|EGG58801.1| putative DNA polymerase IV [Enterococcus faecalis TX1467]
gi|397337580|gb|AFO45252.1| DNA polymerase IV [Enterococcus faecalis D32]
gi|401673629|gb|EJS80008.1| DNA polymerase IV [Enterococcus faecalis ATCC 29212]
gi|402355227|gb|EJU90004.1| putative DNA polymerase IV [Enterococcus faecalis ERV103]
gi|402357108|gb|EJU91822.1| putative DNA polymerase IV [Enterococcus faecalis 599]
gi|402357600|gb|EJU92305.1| putative DNA polymerase IV [Enterococcus faecalis ERV116]
gi|402367496|gb|EJV01836.1| putative DNA polymerase IV [Enterococcus faecalis ERV129]
gi|402368096|gb|EJV02421.1| putative DNA polymerase IV [Enterococcus faecalis ERV25]
gi|402369455|gb|EJV03733.1| putative DNA polymerase IV [Enterococcus faecalis ERV31]
gi|402377650|gb|EJV11547.1| putative DNA polymerase IV [Enterococcus faecalis ERV37]
gi|402377790|gb|EJV11682.1| putative DNA polymerase IV [Enterococcus faecalis ERV62]
gi|402379104|gb|EJV12924.1| putative DNA polymerase IV [Enterococcus faecalis ERV41]
gi|402386707|gb|EJV20205.1| putative DNA polymerase IV [Enterococcus faecalis ERV63]
gi|402388843|gb|EJV22268.1| putative DNA polymerase IV [Enterococcus faecalis ERV68]
gi|402389250|gb|EJV22650.1| putative DNA polymerase IV [Enterococcus faecalis ERV65]
gi|402395031|gb|EJV28162.1| putative DNA polymerase IV [Enterococcus faecalis ERV73]
gi|402396834|gb|EJV29879.1| putative DNA polymerase IV [Enterococcus faecalis ERV72]
gi|402400237|gb|EJV33076.1| putative DNA polymerase IV [Enterococcus faecalis ERV81]
gi|402406967|gb|EJV39507.1| putative DNA polymerase IV [Enterococcus faecalis ERV85]
gi|402408136|gb|EJV40625.1| putative DNA polymerase IV [Enterococcus faecalis R508]
gi|402409171|gb|EJV41606.1| putative DNA polymerase IV [Enterococcus faecalis ERV93]
gi|427186074|emb|CCO73298.1| DNA-damage-inducible protein P [Enterococcus faecalis str.
Symbioflor 1]
gi|429513426|gb|ELA03007.1| DNA-damage-inducible protein P [Enterococcus faecalis OG1X]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|417788626|ref|ZP_12436309.1| DNA polymerase IV [Lactobacillus salivarius NIAS840]
gi|417809984|ref|ZP_12456665.1| DNA polymerase IV [Lactobacillus salivarius GJ-24]
gi|334308803|gb|EGL99789.1| DNA polymerase IV [Lactobacillus salivarius NIAS840]
gi|335350908|gb|EGM52404.1| DNA polymerase IV [Lactobacillus salivarius GJ-24]
Length = 357
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +T+ TCS G+++NK LAKLAS +KP T V V+ L ++PIKK + +G K
Sbjct: 133 EIYLKTKLTCSTGVSYNKFLAKLASDYSKPFGITVVTPDDVQDFLFNMPIKKFRGVGKKT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ E G+ DL E L +G G L+ RGI V+ + KS G
Sbjct: 193 LPKMYEE-GIYYGIDLYNKKEIDLINKFG-KIGHILYQRVRGIDMRPVEWKREQKSVGKE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
++F P LKTV V L + +L
Sbjct: 251 RTFDQP--LKTVEEVDSQLRLIATKL 274
>gi|126662622|ref|ZP_01733621.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
gi|126626001|gb|EAZ96690.1| DNA polymerase IV [Flavobacteria bacterium BAL38]
Length = 353
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E T SAGI+ NK +AK+AS NKP Q TV ++ L+ L +KK + GK+
Sbjct: 120 RIFEEVGLTASAGISANKFVAKIASDYNKPNGQKTVNPDEIEPFLEKLDVKKFYGV-GKV 178
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+LG+ T DL + S + L+ +G N+G + I RGI V+ KS G+
Sbjct: 179 TAEKMYQLGIFTGYDLKQKSVEYLENHFG-NSGLHYFQIVRGIHNSAVKPNRKIKSVGAE 237
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F L + ++ L + +EL +R L+++K T+TL
Sbjct: 238 RTF--GENLSSEIFMEERLQSIAKELEKR----LQKSKISGKTITL 277
>gi|397906621|ref|ZP_10507408.1| DNA polymerase IV [Caloramator australicus RC3]
gi|397160341|emb|CCJ34745.1| DNA polymerase IV [Caloramator australicus RC3]
Length = 415
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E + T S G+++ K++AK+AS + KP T + +K + LP++ + +G ++
Sbjct: 130 RIKRELKITASIGVSYCKLMAKMASDLKKPDATTVIEPEDIKEKIWPLPVEDLFGVGRRM 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH--- 118
L N +G+ T+GDL +++ +G G +LW A GI +V P S
Sbjct: 190 KRKLNN-IGIFTIGDLANMPMSVIEDKFG-KVGRYLWKFANGIDDSKVN----PNSRQIK 243
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERL 151
G G S PR + + L L E + +RL
Sbjct: 244 GIGNSITTPRNVVNMEEASEVLMALSESVGKRL 276
>gi|255974844|ref|ZP_05425430.1| DNA-directed DNA polymerase [Enterococcus faecalis T2]
gi|307278685|ref|ZP_07559753.1| DNA polymerase IV [Enterococcus faecalis TX0860]
gi|255967716|gb|EET98338.1| DNA-directed DNA polymerase [Enterococcus faecalis T2]
gi|306504625|gb|EFM73827.1| DNA polymerase IV [Enterococcus faecalis TX0860]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|444729661|gb|ELW70070.1| DNA polymerase iota [Tupaia chinensis]
Length = 617
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 18/186 (9%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSL-PIKKMKQLGGKLGTSLQN 67
T AG+A NK+LAKL SG+ KP QQT + S + L+ SL IK+M +G K L+
Sbjct: 96 LTGCAGVASNKLLAKLVSGIFKPNQQTVLLPESCQDLIHSLNHIKEMPGIGYKTAKRLE- 154
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LG+ +V DL FS L++ G + + ++ G E + ++P G +SF
Sbjct: 155 ALGIHSVRDLQTFSSKILEKELGISVAQRIQKLSFG----EDNSPVIPS--GPVQSFSEE 208
Query: 128 RALKTVAS---VQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP 184
+ K +S V+ + +L L R+C Q+ R HT+ L + S SR+
Sbjct: 209 DSFKKCSSEVEVKKKIEELLASLLNRVC----QDGRKPHTVRLIIRRYSSEKHYSRE--- 261
Query: 185 SKSCPL 190
S+ CP+
Sbjct: 262 SRQCPI 267
>gi|425002367|ref|ZP_18413799.1| DNA polymerase IV family protein [Enterococcus faecium ERV161]
gi|402983562|gb|EJX98949.1| DNA polymerase IV family protein [Enterococcus faecium ERV161]
Length = 262
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 12/207 (5%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
+ TCSAG+++NK LAKLAS KP T V L +LPI+K +G K +
Sbjct: 38 VQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTVPRM- 96
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ELG+ T DL + +E L ++G G L+ RGI V KS G ++
Sbjct: 97 HELGIYTGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEHTYGQ 155
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS- 185
P L+T +V L QL E++ E L + ++ T+ L S R P
Sbjct: 156 P--LQTEEAVLTQLRQLAEKVEE----ALRRVQKHGKTVVLKVRYTDYSTVTKRVTLPEY 209
Query: 186 --KSCPLRYGTAKIQEDTFNLFQAGLR 210
K L Y + I E+ + + G+R
Sbjct: 210 IYKKEALFYQASLIWEEILGV-EKGIR 235
>gi|409098882|ref|ZP_11218906.1| DNA-directed DNA polymerase [Pedobacter agri PB92]
Length = 366
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG++ NK +AK+AS MNKP T + S +K ++ LP++K + GK+ +
Sbjct: 141 ELNLTASAGVSINKFVAKVASDMNKPDGLTFIGPSKIKAFMEKLPVEKFFGV-GKVTAAK 199
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ + T DL SE +L +G +G + + I RGI V+A KS G+ +
Sbjct: 200 MKAMQIHTGSDLKNLSESQLLSQFG-KSGKFYYKIVRGIDDRPVRANRETKSVGAEDTLA 258
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+V ++ L +++SE + LE+ + T+TL
Sbjct: 259 EDTNEDSV------MHDLLKQISETVAKRLEKYQLKGKTVTL 294
>gi|229549129|ref|ZP_04437854.1| DNA-damage-inducible protein P [Enterococcus faecalis ATCC 29200]
gi|312900115|ref|ZP_07759431.1| DNA polymerase IV [Enterococcus faecalis TX0470]
gi|312951930|ref|ZP_07770818.1| DNA polymerase IV [Enterococcus faecalis TX0102]
gi|384514081|ref|YP_005709174.1| DNA-directed DNA polymerase IV [Enterococcus faecalis OG1RF]
gi|422690964|ref|ZP_16749005.1| DNA polymerase IV [Enterococcus faecalis TX0031]
gi|422701068|ref|ZP_16758909.1| DNA polymerase IV [Enterococcus faecalis TX1342]
gi|422725450|ref|ZP_16781911.1| DNA polymerase IV [Enterococcus faecalis TX0312]
gi|229305754|gb|EEN71750.1| DNA-damage-inducible protein P [Enterococcus faecalis ATCC 29200]
gi|310630119|gb|EFQ13402.1| DNA polymerase IV [Enterococcus faecalis TX0102]
gi|311292750|gb|EFQ71306.1| DNA polymerase IV [Enterococcus faecalis TX0470]
gi|315154281|gb|EFT98297.1| DNA polymerase IV [Enterococcus faecalis TX0031]
gi|315159627|gb|EFU03644.1| DNA polymerase IV [Enterococcus faecalis TX0312]
gi|315170447|gb|EFU14464.1| DNA polymerase IV [Enterococcus faecalis TX1342]
gi|327535970|gb|AEA94804.1| DNA-directed DNA polymerase IV [Enterococcus faecalis OG1RF]
Length = 403
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 180 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 239
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 240 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 297
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 298 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 351
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 352 YISKKEELFYQANLIWEDILGLEQ-GIR 378
>gi|239814330|ref|YP_002943240.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
gi|239800907|gb|ACS17974.1| DNA-directed DNA polymerase [Variovorax paradoxus S110]
Length = 416
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L T TCS G+A NK++AK+AS NKP + V ++ + LP +K+ +G K
Sbjct: 171 ILDATGLTCSIGVAPNKLIAKMASEFNKPNGISVVYEDDLQTRIWPLPCRKVNGIGPKAD 230
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ G+ TVG L D L +++G +TG W+ +A G V P S
Sbjct: 231 EKLKR-FGIETVGQLAARERDWLIQNFGKSTGAWMHEVAWGRDNRPVVTESEPVSMSRET 289
Query: 123 SFPGP-RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKSSDSD 178
+F A++ A + LCE+++E DL++ + T + L FK + D
Sbjct: 290 TFDRDLHAVRDRAELGAIFTHLCEKVAE----DLQRKGYVGKTIGIKLRYDDFKIATRD 344
>gi|421887936|ref|ZP_16319060.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
gi|378966697|emb|CCF95808.1| DNA polymerase IV, devoid of proofreading,damage-inducible protein
P [Ralstonia solanacearum K60-1]
Length = 362
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V V + +LP++++ + GK+
Sbjct: 134 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPQQVDAFVAALPVERLFGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G + G L ++ RGI VQ + KS
Sbjct: 193 TAAKLRRLGAQTCGDLRGWGTDRLQQHFG-SFGFRLHDLCRGIDHRPVQPSQIRKSVSVE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L ++L+ R+
Sbjct: 252 ETYATD--LRTLDDCQRELTVLVDQLAARV 279
>gi|345305688|ref|XP_001509638.2| PREDICTED: DNA polymerase iota-like [Ornithorhynchus anatinus]
Length = 831
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQN 67
T AG+A NK+L+KL SG KP QQT + S + L+ SL IK+M +G K L++
Sbjct: 308 LTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLISSLDHIKQMPGIGFKTTKRLES 367
Query: 68 ELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGP 127
LGV++V DL FS D L++ G + + ++ G V P+S S
Sbjct: 368 -LGVSSVHDLQTFSPDILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEEDSI--- 423
Query: 128 RALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKS 187
R T + + +L L ER+ D R HT+ L F + S +R+ S+
Sbjct: 424 RKCSTEVDAKKKIEELLTNLLERVYKD----GRKPHTIRLTIRRFSAEKSFNRE---SRQ 476
Query: 188 CPL 190
CP+
Sbjct: 477 CPI 479
>gi|147781854|emb|CAN67721.1| hypothetical protein VITISV_006020 [Vitis vinifera]
Length = 500
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGIA N ++A+LA+ KP Q +P V L LPIK + +G L
Sbjct: 375 EIFETTGCTASAGIAGNLLMARLATRSAKPNGQCYIPVDKVDDYLHQLPIKALPGIGHVL 434
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEV 109
L+ V T G L S++ LQ +G TG LWN RG+ V
Sbjct: 435 EEKLRRR-KVHTCGQLRMISKESLQRDFGTKTGDMLWNYCRGVDNRVV 481
>gi|422731872|ref|ZP_16788220.1| DNA polymerase IV [Enterococcus faecalis TX0645]
gi|315162080|gb|EFU06097.1| DNA polymerase IV [Enterococcus faecalis TX0645]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEVAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|83814230|ref|YP_445661.1| DNA polymerase IV [Salinibacter ruber DSM 13855]
gi|83755624|gb|ABC43737.1| putative DNA polymerase IV [Salinibacter ruber DSM 13855]
Length = 373
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 11/190 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+ K +AK+AS ++KP T V + LPI+K +G
Sbjct: 146 EIYEETGLTASAGVGPGKFVAKVASDLDKPDGLTVVRPDEQMEFIAQLPIEKFHGIGPVT 205
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+Q ELG+ T DL + E L +G G +A G VQ KS G+
Sbjct: 206 AAKMQ-ELGIQTGADLQETPERTLIHHFG-KRGRHFKTLAVGTDDRPVQPDRDRKSVGAE 263
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++FP + +A + L++L ++ER+ L Q R T+TL KS D
Sbjct: 264 RTFP-----EDIARAETMLDRLS-PIAERVAQRLRQANRKGRTVTLK---LKSHDHQVST 314
Query: 182 KFPSKSCPLR 191
+ + PLR
Sbjct: 315 RQTTVDRPLR 324
>gi|255971847|ref|ZP_05422433.1| DNA-directed DNA polymerase [Enterococcus faecalis T1]
gi|255962865|gb|EET95341.1| DNA-directed DNA polymerase [Enterococcus faecalis T1]
Length = 374
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 148 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 207
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 208 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 265
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 266 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 319
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 320 YISKKEELFYQANLIWEDILGLEQ-GIR 346
>gi|334325369|ref|XP_001362838.2| PREDICTED: DNA polymerase iota [Monodelphis domestica]
Length = 738
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKL 61
+ + T AG+A NK+L+KL SG KP QQT + S + L+DSL IK+M +G K
Sbjct: 209 IFNQLGLTGCAGVASNKLLSKLVSGTFKPNQQTVLMPESCQDLIDSLDHIKQMPGIGFKT 268
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L++ LG+ +V DL FS L++ G + + ++ G V P+S
Sbjct: 269 TKRLES-LGINSVHDLQTFSPKILEKELGISVAQRIQKLSFGEDNSPVTPSGPPQSFSEE 327
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
SF + + + + +L L R+C+D R HT+ L F S +R+
Sbjct: 328 DSF---KKCSSEVEAKKKIEELLASLLNRVCND----GRKPHTIRLIIRRFSSDRHFNRE 380
Query: 182 KFPSKSCPL 190
S+ CP+
Sbjct: 381 ---SRQCPI 386
>gi|325286065|ref|YP_004261855.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
gi|324321519|gb|ADY28984.1| DNA polymerase IV [Cellulophaga lytica DSM 7489]
Length = 365
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 13/188 (6%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E T SAGI+ NK +AK+AS NKP Q TV V L+ L I+K + GK+
Sbjct: 134 RIYNELGLTASAGISINKFIAKVASDYNKPNGQKTVNPEEVLAFLEELEIRKFYGV-GKV 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++G+ T DL S + L++ +G +G + +++ RGI V+ +PKS G+
Sbjct: 193 TAEKMYKVGIFTGLDLKNKSLEFLEKHFG-KSGAYYYHVVRGIHNSPVKPNRIPKSVGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
++F + ++S L +L E ++ L L+++K T+TL K SD
Sbjct: 252 RTFN-----ENLSSEIFMLERL-ENIANELERRLKKSKIAGKTITL-----KIKYSDFTL 300
Query: 182 KFPSKSCP 189
+ SK+ P
Sbjct: 301 QTRSKTIP 308
>gi|332160678|ref|YP_004297255.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664908|gb|ADZ41552.1| DNA polymerase IV [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862504|emb|CBX72661.1| DNA polymerase IV [Yersinia enterocolitica W22703]
Length = 352
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G L
Sbjct: 133 ELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKIPGVGKVTAKRL 192
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
Q ELG+ T D+ +S+ +L + +G G LW + GI EV L KS G ++
Sbjct: 193 Q-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLRKSVGVEQTL- 249
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ W + CE L E+L +LE R
Sbjct: 250 -------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|300860494|ref|ZP_07106581.1| DNA polymerase IV [Enterococcus faecalis TUSoD Ef11]
gi|300849533|gb|EFK77283.1| DNA polymerase IV [Enterococcus faecalis TUSoD Ef11]
Length = 375
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|123443410|ref|YP_001007383.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420257437|ref|ZP_14760195.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|189044619|sp|A1JNY3.1|DPO4_YERE8 RecName: Full=DNA polymerase IV; Short=Pol IV
gi|122090371|emb|CAL13239.1| DNA-damage-inducible protein P [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|404515086|gb|EKA28863.1| DNA polymerase IV [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 352
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IAMELNLTASAGIAPIKFLAKIASDLNKPNGQYVITPDQVLPFLRDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ ELG+ T D+ +S+ +L + +G G LW + GI EV L KS G +
Sbjct: 190 KRLQ-ELGLITCSDVQNYSQAELLKRFG-KFGHVLWERSHGIDEREVSPDRLRKSVGVEQ 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+ + W + CE L E+L +LE R
Sbjct: 248 TL--------AEDIHDW--ESCESLIEKLYIELETRLR 275
>gi|116748184|ref|YP_844871.1| DNA-directed DNA polymerase [Syntrophobacter fumaroxidans MPOB]
gi|116697248|gb|ABK16436.1| DNA-directed DNA polymerase [Syntrophobacter fumaroxidans MPOB]
Length = 425
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 6/194 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ T TCS GIA K +AK+AS ++KP T V V+ L LP++++ +G K
Sbjct: 160 QIRAATRVTCSVGIAPGKFVAKIASDIHKPDGLTIVEDDRVEAFLAPLPVERIPGIGKKT 219
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+L++ LGV +GD+L+F + G G L ARG+ V A KS +
Sbjct: 220 SEALRS-LGVRAIGDVLRFPASFWVKRLG-AWGVKLHERARGVDPAPVIAYSQAKSCSAE 277
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRK 181
+F P + V +++ WL EE+ + L + + + + TL + + F S
Sbjct: 278 DTF--PEDVDDVETLEKWLFVQSEEVGKELRRESFRGRTV--TLKVKFADFSSITRSHTL 333
Query: 182 KFPSKSCPLRYGTA 195
+ + L +GTA
Sbjct: 334 REATDCTQLIFGTA 347
>gi|71746744|ref|XP_822427.1| DNA polymerase eta [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832095|gb|EAN77599.1| DNA polymerase eta, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 525
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E + CSAGIAHNK+LAK S +KP QQT + V ++ LP K ++ GGK
Sbjct: 214 KIYDELRYDCSAGIAHNKLLAKSISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKF 273
Query: 62 GTSLQNELG---------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 112
G ++ G + ++ + KF E Y + RG +++ R
Sbjct: 274 GEVVRLACGGKETCREAWLHSLCAMSKFFESVGDAEYAYRR-------LRGYDEGKIRER 326
Query: 113 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 150
+ KS + K+F P + T VQ W+ L ELS R
Sbjct: 327 SISKSLMASKAFSPPSS--TANGVQKWVTVLSGELSAR 362
>gi|402487090|ref|ZP_10833915.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
gi|401813920|gb|EJT06257.1| DNA polymerase IV [Rhizobium sp. CCGE 510]
Length = 363
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T T SAGI++NK LAK+ASG NKP Q + + ++ LP+KK +G +
Sbjct: 142 TGLTASAGISYNKFLAKMASGENKPNGQFVITPKNGPAFVERLPVKKFHGVGPATAEKM- 200
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+ LG+ T DL + + + L E +G +G + IARG+ +V+ + KS G+ +F
Sbjct: 201 HRLGIETGADLRRMTLEFLVEHFG-KSGPYFHGIARGLDNRQVRPDRVRKSVGAEDTF 257
>gi|261332129|emb|CBH15122.1| DNA polymerase eta, putative [Trypanosoma brucei gambiense DAL972]
Length = 525
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ E + CSAGIAHNK+LAK S +KP QQT + V ++ LP K ++ GGK
Sbjct: 214 KIYDELRYDCSAGIAHNKLLAKSISARHKPNQQTLLFPDCVASVMWDLPFKSIRGFGGKF 273
Query: 62 GTSLQNELG---------VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR 112
G ++ G + ++ + KF E Y + RG +++ R
Sbjct: 274 GEVVRLACGGKETCREAWLHSLCAMSKFFESVGDAEYAYRR-------LRGYDEGKIRER 326
Query: 113 LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSER 150
+ KS + K+F P + T VQ W+ L ELS R
Sbjct: 327 SISKSLMASKAFSPPSS--TANGVQKWVTVLSGELSAR 362
>gi|387133651|ref|YP_006299623.1| ImpB/MucB/SamB family protein [Prevotella intermedia 17]
gi|386376499|gb|AFJ07990.1| ImpB/MucB/SamB family protein [Prevotella intermedia 17]
Length = 345
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET T SAG+++NK+LAK+AS KP TV + LPI+K +G K
Sbjct: 121 IFRETHLTASAGVSYNKLLAKIASDYRKPNGIFTVHPDKALDFIAELPIRKFLGIGPKTA 180
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ +++G+ L K S L + +G G+ L++ ARGI V A KS G +
Sbjct: 181 ATM-HKMGIYKGEQLRKVSLSHLVQVFG-KMGSVLYDFARGIDNRPVAAYRERKSVGCEQ 238
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L T + V L + EL ER+ ++K HTL+L
Sbjct: 239 TF--LEDLNTESKVIIALYHIVIELIERIS----KSKFEGHTLSL 277
>gi|161407222|ref|YP_640258.2| DNA polymerase IV [Mycobacterium sp. MCS]
Length = 454
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+VL+ET S G K +AK+ASG+ KP V + + LLDSL ++K+ + G +
Sbjct: 132 RVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLWGI-GPV 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ T+G L SE ++ + G G L +ARGI V R K +
Sbjct: 191 AEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAKQISAE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 176
+FP L T+ V+ + + + RL D R A T+T+ K SD
Sbjct: 251 STFPA--DLITLDQVREAIGPIADHAHRRLAKD----GRGARTVTVK---LKKSD 296
>gi|119869187|ref|YP_939139.1| DNA polymerase IV [Mycobacterium sp. KMS]
gi|108770480|gb|ABG09202.1| DNA-directed DNA polymerase [Mycobacterium sp. MCS]
gi|119695276|gb|ABL92349.1| DNA-directed DNA polymerase [Mycobacterium sp. KMS]
Length = 452
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 10/175 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+VL+ET S G K +AK+ASG+ KP V + + LLDSL ++K+ + G +
Sbjct: 130 RVLEETGLVASVGAGSGKQIAKIASGLAKPDGIRVVRRADERRLLDSLAVRKLWGI-GPV 188
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ T+G L SE ++ + G G L +ARGI V R K +
Sbjct: 189 AEDKLHRLGIETIGQLAALSEAEVADILGATVGPALHRLARGIDERPVAERAEAKQISAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSD 176
+FP L T+ V+ + + + RL D R A T+T+ K SD
Sbjct: 249 STFPA--DLITLDQVREAIGPIADHAHRRLAKD----GRGARTVTVK---LKKSD 294
>gi|159124308|gb|EDP49426.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
A1163]
Length = 1154
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 11 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 70
S GI N + AK+A KPA Q + SV L+ L ++ + +G LG L+ ELG
Sbjct: 526 VSVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLE-ELG 584
Query: 71 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 130
V V D+ S +KL G TG +W ARGI EV +L KS + ++ G R +
Sbjct: 585 VKLVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNW-GIRFV 643
Query: 131 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 170
+ + ++ LCEEL RL +L + K++ + A+
Sbjct: 644 NQTQA-EDFVKSLCEELHRRLSDNLVKGKQLTLKVMRRAA 682
>gi|238501556|ref|XP_002382012.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
gi|317142698|ref|XP_001819029.2| DNA damage repair protein Mus42 [Aspergillus oryzae RIB40]
gi|220692249|gb|EED48596.1| DNA damage repair protein Mus42, putative [Aspergillus flavus
NRRL3357]
Length = 1147
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +T S GI N + AK+A KPA Q + +V + L ++ + +G LG
Sbjct: 508 VKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGGLTVQDLPGVGHSLG 567
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + + +KL + G G +W+ ARGI EV + ++ KS +
Sbjct: 568 GKLE-ELGVKLVKDVRELTREKLTSTLGPKLGAKIWDYARGIDRTEVGSEVMRKSVSAEV 626
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 170
++ G R + A ++ LCEEL RL +L + K++ + A+
Sbjct: 627 NW-GIRFVNQ-AQADDFVQSLCEELHRRLVENLVKGKQLTLKVMRRAA 672
>gi|89901130|ref|YP_523601.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118]
gi|89345867|gb|ABD70070.1| DNA-directed DNA polymerase [Rhodoferax ferrireducens T118]
Length = 413
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T TCS G+A NK+LAK+AS NKP V ++ + L +K+ +G K
Sbjct: 165 IFEQTGLTCSIGVAPNKLLAKMASEFNKPKGIAVVFEEDLQSKIWPLACRKINGIGPKTD 224
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ +G+ T+G+L + + D L + +G TG WL++ A G V P S
Sbjct: 225 VKLQG-MGIQTIGELAQKTVDWLIDHFGQKTGAWLFDAAHGRDQRPVVLESEPVSISRET 283
Query: 123 SFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 178
+F A++ A++ +LC++++ L + K I + L FKS D
Sbjct: 284 TFERDLHAVRDKAALGAIFTRLCQQVASDLAAKGYVGKTIG--IKLRYEDFKSVTRD 338
>gi|383188934|ref|YP_005199062.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587192|gb|AEX50922.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 364
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 18/225 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IFDEIALTASAGIAPIKFLAKIASDLNKPNGQFVITPEKVGAFLQDLPLSKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
LQ E G+ T GD+ ++ KL + +G G LW +GI E+ + L KS G +
Sbjct: 190 QRLQ-EQGLFTCGDVQRYDLAKLLKRFG-KFGRVLWERCQGIDEREISSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAFKSSDSDSRK 181
+ + W + C L ERL +L R++ L + K D ++
Sbjct: 248 TL--------AEDIHGW--EECVALIERLYPELHTRLSRVSPDLRIARQGVKLKFHDFQQ 297
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
P+ +ED + + + G GV+ G H +
Sbjct: 298 TTQEHVWPVLN-----KEDLLKVAREAWEKRRGGRGVRLVGLHVT 337
>gi|83766887|dbj|BAE57027.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1087
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 3/168 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V +T S GI N + AK+A KPA Q + +V + L ++ + +G LG
Sbjct: 508 VKHKTGCAVSIGIGGNILQAKVALRKAKPAGQFQLKPDAVLDFIGGLTVQDLPGVGHSLG 567
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + + +KL + G G +W+ ARGI EV + ++ KS +
Sbjct: 568 GKLE-ELGVKLVKDVRELTREKLTSTLGPKLGAKIWDYARGIDRTEVGSEVMRKSVSAEV 626
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 170
++ G R + A ++ LCEEL RL +L + K++ + A+
Sbjct: 627 NW-GIRFVNQ-AQADDFVQSLCEELHRRLVENLVKGKQLTLKVMRRAA 672
>gi|392863431|gb|EAS35817.2| DNA damage repair protein Mus42 [Coccidioides immitis RS]
Length = 1128
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + AKLA KPA Q + V + L ++++ + LG
Sbjct: 493 VKQKTGCDVSVGIGGNILQAKLALRKAKPAGQFQLKPEVVLEFIGELTVQQLPGVAYSLG 552
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S ++L + G TG LW+ ARGI +V + P+ S +
Sbjct: 553 AKLE-ELGVKFVKDIRELSRERLTSNLGPKTGAKLWDYARGIDNADV-GDVAPRKSVSAE 610
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 611 INWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|404448685|ref|ZP_11013677.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
gi|403765409|gb|EJZ26287.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Indibacter alkaliphilus LW1]
Length = 360
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +E SAGI++NK LAK AS +NKP Q + + L+ LPI+K + GK+
Sbjct: 131 RIKEEIGLNASAGISYNKFLAKTASDINKPNGQAVILPQDAESFLEKLPIEKFFGI-GKV 189
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ DL +FS L + +G +G +NI RGI EVQ + KS +
Sbjct: 190 TSEKMKSLGIHNGYDLKQFSLQFLTKRFG-KSGLHFYNIVRGIHLSEVQPNRIRKSLSAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+F LK+ L+++ EEL R+
Sbjct: 249 NTFSTD--LKSEVEWLAALSEIFEELKRRV 276
>gi|70991795|ref|XP_750746.1| DNA damage repair protein Mus42 [Aspergillus fumigatus Af293]
gi|66848379|gb|EAL88708.1| DNA damage repair protein Mus42, putative [Aspergillus fumigatus
Af293]
Length = 1154
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 11 CSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELG 70
S GI N + AK+A KPA Q + SV L+ L ++ + +G LG L+ ELG
Sbjct: 526 VSVGIGGNILQAKVALRKAKPAGQFQLKPDSVLDLIGDLTVQDLPGVGYSLGAKLE-ELG 584
Query: 71 VTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRAL 130
V V D+ S +KL G TG +W ARGI EV +L KS + ++ G R +
Sbjct: 585 VKLVKDVRGVSREKLINHLGPKTGLKIWEYARGIDRTEVGNEVLRKSVSAEVNW-GIRFV 643
Query: 131 KTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHAS 170
+ + ++ LCEEL RL +L + K++ + A+
Sbjct: 644 NQTQA-EDFVKSLCEELHRRLSDNLVKGKQLTLKVMRRAA 682
>gi|420212314|ref|ZP_14717666.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM001]
gi|394279945|gb|EJE24239.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM001]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|332292065|ref|YP_004430674.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
gi|332170151|gb|AEE19406.1| DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5]
Length = 370
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 2 QVLKE-TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGK 60
Q +KE T SAGI+ NK +AK+AS +NKP Q T+P V L+ L I+K +G K
Sbjct: 132 QRIKEKTGLNASAGISINKFIAKVASDINKPNGQKTIPPEEVITFLEELDIRKFYGIGKK 191
Query: 61 LGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS 120
+ G+ T D+ S++ L +++G +G + ++I RGI EV+ + KS +
Sbjct: 192 TAEKMYLH-GIFTGMDMKMKSKEYLSDNFG-KSGAYYYDIVRGIQYSEVRPNRIRKSLAA 249
Query: 121 GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAF 172
++F + + + L+ + EE+ +RL K I TL + S F
Sbjct: 250 ERTF--SENITSEIFMLEKLDIIAEEVEKRLAKSQVAGKTI--TLKIKYSDF 297
>gi|27468498|ref|NP_765135.1| DNA polymerase IV [Staphylococcus epidermidis ATCC 12228]
gi|251809900|ref|ZP_04824373.1| DNA-damage inducible protein P [Staphylococcus epidermidis
BCM-HMP0060]
gi|282874555|ref|ZP_06283440.1| DNA polymerase IV [Staphylococcus epidermidis SK135]
gi|293367791|ref|ZP_06614440.1| DNA-directed DNA polymerase IV [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646458|ref|ZP_12296314.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU144]
gi|417659894|ref|ZP_12309488.1| DNA polymerase IV [Staphylococcus epidermidis VCU045]
gi|417908264|ref|ZP_12552023.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU037]
gi|417911002|ref|ZP_12554715.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU105]
gi|417912879|ref|ZP_12556561.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU109]
gi|418605852|ref|ZP_13169155.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU041]
gi|418606958|ref|ZP_13170219.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU057]
gi|418610328|ref|ZP_13173443.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU065]
gi|418613473|ref|ZP_13176483.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU117]
gi|418617522|ref|ZP_13180417.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU120]
gi|418625409|ref|ZP_13188060.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU125]
gi|418625794|ref|ZP_13188432.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU126]
gi|418630281|ref|ZP_13192765.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU127]
gi|418663929|ref|ZP_13225430.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU081]
gi|419768889|ref|ZP_14294992.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-250]
gi|419770575|ref|ZP_14296646.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166210|ref|ZP_14672897.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM088]
gi|420171194|ref|ZP_14677741.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM070]
gi|420173308|ref|ZP_14679802.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM067]
gi|420186794|ref|ZP_14692819.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM039]
gi|420195655|ref|ZP_14701444.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM021]
gi|420202524|ref|ZP_14708115.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM018]
gi|420208099|ref|ZP_14713579.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM008]
gi|420209729|ref|ZP_14715164.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM003]
gi|420215030|ref|ZP_14720303.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05005]
gi|420215900|ref|ZP_14721126.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05001]
gi|420221202|ref|ZP_14726154.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH04008]
gi|420223532|ref|ZP_14728428.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH08001]
gi|420226094|ref|ZP_14730917.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH06004]
gi|420228506|ref|ZP_14733257.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05003]
gi|420230843|ref|ZP_14735521.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH04003]
gi|420233292|ref|ZP_14737908.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH051668]
gi|420235878|ref|ZP_14740410.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH051475]
gi|421608740|ref|ZP_16049954.1| DNA polymerase IV [Staphylococcus epidermidis AU12-03]
gi|38257568|sp|Q8CNP3.1|DPO4_STAES RecName: Full=DNA polymerase IV; Short=Pol IV
gi|27316045|gb|AAO05179.1|AE016749_125 DNA-damage inducible protein P [Staphylococcus epidermidis ATCC
12228]
gi|251806565|gb|EES59222.1| DNA-damage inducible protein P [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296694|gb|EFA89203.1| DNA polymerase IV [Staphylococcus epidermidis SK135]
gi|291318130|gb|EFE58527.1| DNA-directed DNA polymerase IV [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726908|gb|EGG63366.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU144]
gi|329734724|gb|EGG71030.1| DNA polymerase IV [Staphylococcus epidermidis VCU045]
gi|341654441|gb|EGS78187.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU105]
gi|341656485|gb|EGS80202.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU037]
gi|341657098|gb|EGS80795.1| putative DNA polymerase IV [Staphylococcus epidermidis VCU109]
gi|374401085|gb|EHQ72173.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU041]
gi|374404654|gb|EHQ75623.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU065]
gi|374406675|gb|EHQ77566.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU057]
gi|374411006|gb|EHQ81731.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU081]
gi|374815755|gb|EHR79978.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU117]
gi|374818427|gb|EHR82589.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU120]
gi|374825229|gb|EHR89173.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU125]
gi|374831512|gb|EHR95251.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU127]
gi|374834860|gb|EHR98494.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU126]
gi|383358793|gb|EID36239.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-250]
gi|383363188|gb|EID40527.1| ImpB/MucB/SamB family protein [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233855|gb|EJD79445.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM088]
gi|394238377|gb|EJD83846.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM070]
gi|394240239|gb|EJD85666.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM067]
gi|394257437|gb|EJE02357.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM039]
gi|394263031|gb|EJE07777.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM021]
gi|394269274|gb|EJE13809.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM018]
gi|394274720|gb|EJE19130.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM008]
gi|394277731|gb|EJE22050.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM003]
gi|394282660|gb|EJE26847.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05005]
gi|394285021|gb|EJE29110.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH04008]
gi|394287256|gb|EJE31220.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH08001]
gi|394292810|gb|EJE36547.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH06004]
gi|394293011|gb|EJE36741.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05001]
gi|394294769|gb|EJE38434.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH05003]
gi|394295977|gb|EJE39610.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH04003]
gi|394300349|gb|EJE43855.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH051668]
gi|394301862|gb|EJE45315.1| putative DNA polymerase IV [Staphylococcus epidermidis NIH051475]
gi|406655630|gb|EKC82055.1| DNA polymerase IV [Staphylococcus epidermidis AU12-03]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|329114949|ref|ZP_08243704.1| DNA polymerase IV [Acetobacter pomorum DM001]
gi|326695392|gb|EGE47078.1| DNA polymerase IV [Acetobacter pomorum DM001]
Length = 360
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L ET T SAG+++NK LAKLAS KP Q +P + + + +LP+ +G
Sbjct: 134 ILHETGLTASAGVSYNKFLAKLASDYRKPNGQFVIPPNRGEAFVANLPVNAFHGVGPATA 193
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ LG+ T DL +FS D L++ +G + + IARG V+ KS G
Sbjct: 194 QRMHT-LGIHTGADLRRFSLDILRQHFG-KAAAFYYGIARGKDDRPVEPNRPRKSLGKEI 251
Query: 123 SFPGPRALKTVASVQHWLNQLCEEL 147
+F + L+T A + L++L ++
Sbjct: 252 TF--AQDLRTSAELHAALHELAAKV 274
>gi|416127634|ref|ZP_11597000.1| DNA polymerase IV [Staphylococcus epidermidis FRI909]
gi|418615445|ref|ZP_13178389.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU118]
gi|418634427|ref|ZP_13196822.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU129]
gi|420190751|ref|ZP_14696691.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM037]
gi|420204821|ref|ZP_14710360.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM015]
gi|319399860|gb|EFV88107.1| DNA polymerase IV [Staphylococcus epidermidis FRI909]
gi|374817408|gb|EHR81592.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU118]
gi|374837284|gb|EHS00853.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU129]
gi|394258430|gb|EJE03313.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM037]
gi|394271745|gb|EJE16231.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM015]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|422714841|ref|ZP_16771567.1| DNA polymerase IV [Enterococcus faecalis TX0309A]
gi|422717982|ref|ZP_16774655.1| DNA polymerase IV [Enterococcus faecalis TX0309B]
gi|315573793|gb|EFU85984.1| DNA polymerase IV [Enterococcus faecalis TX0309B]
gi|315580305|gb|EFU92496.1| DNA polymerase IV [Enterococcus faecalis TX0309A]
Length = 300
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 77 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 136
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 137 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 194
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + ER ++++ + T+ L + R P
Sbjct: 195 TP--LTTEEQVTAQLRQLAAGV-ERALQRVQKHGK---TVVLKVRYTDYTTITKRVTLPE 248
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 249 YISKKEELFYQANLIWEDILGLEQ-GIR 275
>gi|119383484|ref|YP_914540.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
gi|119373251|gb|ABL68844.1| DNA-directed DNA polymerase [Paracoccus denitrificans PD1222]
Length = 363
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAG+++NK LAKLAS KP +P + + LPI + +G
Sbjct: 134 RIREATGLTASAGVSYNKFLAKLASDQRKPDGLFVIPPEAGAEFVQGLPIGRFHGIGPAT 193
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
++ G+ T DL + S D L +G +G + WNI+RGI EV+ + KS G+
Sbjct: 194 AARMEAH-GILTGADLARQSLDFLTARFG-KSGAYYWNISRGIDTREVKPDRIRKSIGAE 251
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
++ L+ +A+ L L +++
Sbjct: 252 NTY--FEDLRDIAAAHEALAVLADKV 275
>gi|195999238|ref|XP_002109487.1| hypothetical protein TRIADDRAFT_2325 [Trichoplax adhaerens]
gi|190587611|gb|EDV27653.1| hypothetical protein TRIADDRAFT_2325, partial [Trichoplax
adhaerens]
Length = 386
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 77/160 (48%), Gaps = 4/160 (2%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
T S GIAHNKML+K+ SG++KP QT + LL SL ++K+ +G LQ+
Sbjct: 167 LTSSGGIAHNKMLSKIVSGLHKPNLQTAIYPEDTLDLLHSLELRKIAGIGSATNNKLQS- 225
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
+G+TTV +L L+ + L+ +GI +V A PKS G SF R
Sbjct: 226 VGITTVKELSTLPLAVLKTHFPTPQACTLFQWCKGIDDSDVVAATKPKSIGVEDSF--SR 283
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLH 168
+AS + ++ L L RL E + + T+ H
Sbjct: 284 CCTMIAS-KKRISDLIRHLLSRLVDGCEHPQTVKLTIIKH 322
>gi|425054472|ref|ZP_18457978.1| putative DNA polymerase IV [Enterococcus faecium 505]
gi|403035786|gb|EJY47169.1| putative DNA polymerase IV [Enterococcus faecium 505]
Length = 373
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 4/149 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + + TCSAG+++NK LAKLAS KP T V L +LPI+K +G K
Sbjct: 145 IWERVQLTCSAGVSYNKFLAKLASDYQKPRGITVVAPQDAVPFLKALPIEKFHGVGKKTV 204
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +ELG+ DL + +E L ++G G L+ RGI V KS G
Sbjct: 205 PRM-HELGIYIGKDLYECTEMMLIRNFG-KMGYSLYRKVRGIHDSPVNVTRERKSVGKEH 262
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERL 151
++ P L+T +V L QL E++ E L
Sbjct: 263 TYGQP--LQTEEAVLAQLRQLAEKVEEAL 289
>gi|420178618|ref|ZP_14684947.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM057]
gi|420180941|ref|ZP_14687149.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM053]
gi|394246129|gb|EJD91393.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM057]
gi|394248254|gb|EJD93494.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM053]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|418413117|ref|ZP_12986361.1| DNA polymerase IV [Staphylococcus epidermidis BVS058A4]
gi|420164221|ref|ZP_14670953.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM095]
gi|420169058|ref|ZP_14675663.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM087]
gi|394232231|gb|EJD77849.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM095]
gi|394232360|gb|EJD77977.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM087]
gi|410879406|gb|EKS27253.1| DNA polymerase IV [Staphylococcus epidermidis BVS058A4]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|110803706|ref|YP_698855.1| DNA polymerase IV [Clostridium perfringens SM101]
gi|123047351|sp|Q0SSQ2.1|DPO4_CLOPS RecName: Full=DNA polymerase IV; Short=Pol IV
gi|110684207|gb|ABG87577.1| DNA polymerase IV [Clostridium perfringens SM101]
Length = 359
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 6/172 (3%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + LPI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRKLPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLL FSE +L G + G L+ ARGI +V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLGFSEKELIGILG-DRGKILYEFARGIDNRQVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFK 173
K ++ + + L+++ E +SE LC ++ K + TL + + FK
Sbjct: 248 KEITLREDIEDIEEMIEILDKIAERVSESLCLLNKKGKTV--TLKVKFNDFK 297
>gi|119193432|ref|XP_001247322.1| hypothetical protein CIMG_01093 [Coccidioides immitis RS]
Length = 1021
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ++T S GI N + AKLA KPA Q + V + L ++++ + LG
Sbjct: 493 VKQKTGCDVSVGIGGNILQAKLALRKAKPAGQFQLKPEVVLEFIGELTVQQLPGVAYSLG 552
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+ ELGV V D+ + S ++L + G TG LW+ ARGI +V + P+ S +
Sbjct: 553 AKLE-ELGVKFVKDIRELSRERLTSNLGPKTGAKLWDYARGIDNADV-GDVAPRKSVSAE 610
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHA 169
G R + T A V+ ++ LC+EL RL + + K++ + A
Sbjct: 611 INWGIRFV-TQAQVEEFVQSLCDELHRRLMENGVKGKQLTMRIMRRA 656
>gi|313140852|ref|ZP_07803045.1| DNA-damage-inducible protein P [Bifidobacterium bifidum NCIMB
41171]
gi|313133362|gb|EFR50979.1| DNA-damage-inducible protein P [Bifidobacterium bifidum NCIMB
41171]
Length = 454
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 171 EVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 230
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L+ ARG+ V KS GS
Sbjct: 231 ERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGMDERAVTPYTPEKSIGS 289
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 290 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 330
>gi|417657265|ref|ZP_12306931.1| DNA polymerase IV [Staphylococcus epidermidis VCU028]
gi|329734789|gb|EGG71094.1| DNA polymerase IV [Staphylococcus epidermidis VCU028]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|242241733|ref|ZP_04796178.1| DNA-damage inducible protein P [Staphylococcus epidermidis W23144]
gi|418329079|ref|ZP_12940166.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|418631482|ref|ZP_13193944.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU128]
gi|420174157|ref|ZP_14680611.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM061]
gi|420200723|ref|ZP_14706364.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM031]
gi|242234823|gb|EES37134.1| DNA-damage inducible protein P [Staphylococcus epidermidis W23144]
gi|365231185|gb|EHM72243.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis
14.1.R1.SE]
gi|374835244|gb|EHR98864.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU128]
gi|394245297|gb|EJD90612.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM061]
gi|394267681|gb|EJE12265.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM031]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|57867359|ref|YP_189002.1| DNA polymerase IV [Staphylococcus epidermidis RP62A]
gi|81674006|sp|Q5HN39.1|DPO4_STAEQ RecName: Full=DNA polymerase IV; Short=Pol IV
gi|57638017|gb|AAW54805.1| DNA-damage-inducible protein P [Staphylococcus epidermidis RP62A]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|420193340|ref|ZP_14699193.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM023]
gi|394259985|gb|EJE04808.1| DNA polymerase IV [Staphylococcus epidermidis NIHLM023]
Length = 356
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|393758257|ref|ZP_10347080.1| DNA-directed DNA polymerase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393165045|gb|EJC65095.1| DNA-directed DNA polymerase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 401
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 93/216 (43%), Gaps = 9/216 (4%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+ T TCS GI NK+L+K+AS +NKP + V + L + K+ +G K
Sbjct: 170 QATGLTCSVGITPNKLLSKIASELNKPNGACVLTMDDVPTRIWPLAVGKINGIGPKSVLK 229
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L ELG+ +G+L +KLQE +G WL +A G + PKS +F
Sbjct: 230 L-TELGIGQIGELAATPAEKLQEHFGLRYAQWLMAVAHGQDDRPLTTDRTPKSISRETTF 288
Query: 125 PGPRALKTVASVQHW-LNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKF 183
++ S W L LCE+L + DL ++ A T+ + K D +
Sbjct: 289 ERDLHVRMDRSRLSWVLESLCEKLEQ----DLRKSAMCAQTIGIK---LKFEDFKIVTRD 341
Query: 184 PSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVK 219
S P+ A + NL +A L L GVK
Sbjct: 342 LSLPTPVLAADAILAAARQNLKRAVLDRRLRLLGVK 377
>gi|417793255|ref|ZP_12440535.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
gi|334273503|gb|EGL91847.1| ImpB/MucB/SamB family protein [Streptococcus oralis SK255]
Length = 345
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS KP T + + L + I K +G K
Sbjct: 143 IWQELHLTASAGVSYNKFLAKMASDYQKPHGLTVILPDQAEDFLKQMDIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +ELG+ T DLL SE L + +G G L+ ARGI V+A + KS G K
Sbjct: 203 EKL-HELGIYTGADLLDVSEVTLIDRFG-RLGFDLYRKARGIHNSPVKANRIRKSIGKEK 260
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
++ + V+ + + LSE++ +L Q + + L S RK
Sbjct: 261 TYG------KILHVEEDIKKELTLLSEKVAHNLSQQGKAGKIIILKIRYADFSTLTRRKS 314
Query: 183 FP 184
P
Sbjct: 315 LP 316
>gi|257421635|ref|ZP_05598625.1| DNA-damage-inducible protein P [Enterococcus faecalis X98]
gi|422707258|ref|ZP_16764955.1| DNA polymerase IV [Enterococcus faecalis TX0043]
gi|257163459|gb|EEU93419.1| DNA-damage-inducible protein P [Enterococcus faecalis X98]
gi|315155616|gb|EFT99632.1| DNA polymerase IV [Enterococcus faecalis TX0043]
Length = 372
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 90/208 (43%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + L++ ++ T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGVEHA----LQRVQKHGKTVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|93117309|gb|ABE99572.1| DinB [Neisseria meningitidis]
Length = 335
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|93117305|gb|ABE99570.1| DinB [Neisseria meningitidis H44/76]
Length = 335
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|156378071|ref|XP_001630968.1| predicted protein [Nematostella vectensis]
gi|156217999|gb|EDO38905.1| predicted protein [Nematostella vectensis]
Length = 403
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLG---- 58
+ E T AGIAHNK+LAK+A NKP +QT + V+GL+ LP++K+ +G
Sbjct: 165 IFDEIGLTTCAGIAHNKLLAKIAGEQNKPNKQTLLYTERVEGLMGLLPVRKVPGIGRSTC 224
Query: 59 GKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSH 118
+LG+ LG+TT+ +L + S+ L + L ++ G +V +PKS
Sbjct: 225 ARLGS-----LGITTIAELQECSKKALLNEFNSQEVRILHALSHGADDSQVSTDSMPKSI 279
Query: 119 GSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSD 178
S+ L ++ SV+ L L L R+ D H T+ + + +
Sbjct: 280 SEEDSYSN---LCSLESVKTNLRVLIGNLIPRITED------TGHPQTVRLAIRRGGQAP 330
Query: 179 SRKKFPSKSCPL 190
K S+ CP+
Sbjct: 331 GVYKKESRQCPV 342
>gi|315125765|ref|YP_004067768.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
gi|315014279|gb|ADT67617.1| DNA polymerase IV [Pseudoalteromonas sp. SM9913]
Length = 353
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++LK T T SAGIA K +AK+AS +NKP Q T+ V L++LP+KK+ + GK+
Sbjct: 129 EILKATGLTASAGIAPLKFVAKVASDLNKPNGQCTITPDQVWEFLETLPLKKIPGV-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
LG T GD+ + E L ++G G LWN + G EV+ + KS G
Sbjct: 188 TFEKLKALGFETCGDIRRSDESFLASNFG-KYGHVLWNRSHGKDDREVEVTRIRKSVGVE 246
Query: 122 KSF 124
++F
Sbjct: 247 RTF 249
>gi|319946234|ref|ZP_08020474.1| DNA-directed DNA polymerase IV [Streptococcus australis ATCC
700641]
gi|417919687|ref|ZP_12563215.1| DNA polymerase IV [Streptococcus australis ATCC 700641]
gi|319747616|gb|EFV99869.1| DNA-directed DNA polymerase IV [Streptococcus australis ATCC
700641]
gi|342832315|gb|EGU66614.1| DNA polymerase IV [Streptococcus australis ATCC 700641]
Length = 370
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS KP T + + L L + K +G + L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDYQKPRGLTVILPEQAQDFLSQLDVAKFHGVGKRTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
++LG+ T DLL+ E L + +G G L+ ARGI V++ + KS G +++
Sbjct: 206 -HDLGIYTGADLLEVPEMTLIDHFG-RFGFDLYRKARGIHNSPVKSNRIRKSIGKERTYR 263
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
K + + L +L LSE++ S L ++++I TL L
Sbjct: 264 -----KLLVAEDDVLKELA-NLSEKVASSLAKHQKIGKTLVL 299
>gi|406669555|ref|ZP_11076825.1| hypothetical protein HMPREF9707_00728 [Facklamia ignava CCUG 37419]
gi|405583251|gb|EKB57219.1| hypothetical protein HMPREF9707_00728 [Facklamia ignava CCUG 37419]
Length = 369
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 17/181 (9%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
+E TCS G+++NK +AK+AS KP T V + L L IKK +G K
Sbjct: 150 EELHLTCSVGVSYNKYIAKIASDFKKPHGITVVEPTDAAEFLKQLDIKKFPGVGRKTYPQ 209
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
ELG+ + DL + + L + +G G L+ RG+S EV+ + KS+G ++F
Sbjct: 210 FI-ELGIESGADLYEKDLEFLIQHFG-KLGYTLYYKVRGVSNFEVKPKNHRKSYGRERTF 267
Query: 125 PGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI----AHTLTLHASAFKSSDSDSR 180
P L T A+V L ERL L++N RI A+T+TL +++ D+ +R
Sbjct: 268 -AP-FLVTPAAVNDQL--------ERLAQLLDRNGRIKELRAYTVTLKVR-YENFDTLTR 316
Query: 181 K 181
+
Sbjct: 317 Q 317
>gi|420238527|ref|ZP_14742925.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
gi|398086197|gb|EJL76826.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Rhizobium sp. CF080]
Length = 366
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T SAGI++NK LAK+AS +NKP Q + ++ +++LP+KK +G ++
Sbjct: 141 TGLNASAGISYNKFLAKMASDLNKPNGQAVITPNNGPSFVEALPVKKFHGVGPATAERMR 200
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+LG+ T DL S LQE +G +G + + +ARGI V+A + KS G+ +F
Sbjct: 201 -KLGIETGLDLKSKSLIFLQEHFG-KSGPYFYGVARGIDERRVRADRIRKSVGAEDTF 256
>gi|93117315|gb|ABE99575.1| DinB [Neisseria meningitidis]
gi|93117317|gb|ABE99576.1| DinB [Neisseria meningitidis]
Length = 336
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|93117307|gb|ABE99571.1| DinB [Neisseria meningitidis]
Length = 329
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 125 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 183
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 184 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 231
>gi|421736133|ref|ZP_16174980.1| DNA polymerase IV, partial [Bifidobacterium bifidum IPLA 20015]
gi|407296597|gb|EKF16132.1| DNA polymerase IV, partial [Bifidobacterium bifidum IPLA 20015]
Length = 357
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 EVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L+ ARG+ V KS GS
Sbjct: 207 ERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGMDERAVTPYTPEKSIGS 265
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 266 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|422697935|ref|ZP_16755862.1| DNA polymerase IV [Enterococcus faecalis TX1346]
gi|315173496|gb|EFU17513.1| DNA polymerase IV [Enterococcus faecalis TX1346]
Length = 372
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 90/208 (43%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGKKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + L++ ++ T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGVEHA----LQRVQKHGKTVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|404496301|ref|YP_006720407.1| DNA polymerase IV [Geobacter metallireducens GS-15]
gi|418064975|ref|ZP_12702351.1| DNA-directed DNA polymerase [Geobacter metallireducens RCH3]
gi|373563248|gb|EHP89449.1| DNA-directed DNA polymerase [Geobacter metallireducens RCH3]
gi|403378040|gb|ABB31675.2| DNA polymerase IV [Geobacter metallireducens GS-15]
Length = 413
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCS GIA NK+LAKLAS M KP T + V +L++LPIK++ +G K+ L N
Sbjct: 137 LTCSIGIAPNKLLAKLASEMKKPDGLTVIKPDDVAPVLETLPIKELCGIGAKMECQL-NL 195
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS-----GKS 123
LG+ T G+L ++ D+L +G G L + +GI V +P G S
Sbjct: 196 LGIRTCGELGRYPVDRLMRKFGI-VGEKLHLMGQGIDDSPV----VPHEEAEEVKSVGHS 250
Query: 124 FPGPRALKTVASVQHWLNQLCEELSER 150
++ + WL QL E + R
Sbjct: 251 TTLEHDIEDRREILRWLLQLSEMVGRR 277
>gi|357019753|ref|ZP_09081991.1| DNA polymerase IV [Mycobacterium thermoresistibile ATCC 19527]
gi|356480473|gb|EHI13603.1| DNA polymerase IV [Mycobacterium thermoresistibile ATCC 19527]
Length = 367
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 10/205 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
V ET +CS GI+ NK AK+A+G KPA + ++ ++ P+ + +G K
Sbjct: 144 VTAETGLSCSIGISDNKQRAKVATGFAKPAGIYRLTDANWMAVMGDRPVDALWGVGPKTA 203
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSG 121
L LG+TTV DL L ++G +TG WL +A+G EV A +P+S
Sbjct: 204 KRLAT-LGITTVADLEATDATVLTTTFGPSTGLWLLLLAKGGGDTEVSAEPWVPRSRSHV 262
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAH--TLTLHASAFKSSDSDS 179
+F PR L A ++ +L+ R ++ RI +T+ F +
Sbjct: 263 VTF--PRDLTERAE----MDAAVADLARRTVDEVVAAGRIVTRVAVTVRTDTFSTRTKIR 316
Query: 180 RKKFPSKSCPLRYGTAKIQEDTFNL 204
+ PS L TA D F++
Sbjct: 317 KLPVPSTDPDLITATALAVMDLFDI 341
>gi|340377599|ref|XP_003387317.1| PREDICTED: DNA polymerase kappa-like, partial [Amphimedon
queenslandica]
Length = 723
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGL--LDSLPIKKMKQLGGKLGTS 64
T+ T SAGIA NKMLAK+AS MNKP Q +P S K L + LPI+K+ + GK+
Sbjct: 324 TQLTASAGIASNKMLAKIASDMNKPNGQYMIPPSREKILEFIRKLPIRKVSGI-GKVTEK 382
Query: 65 LQNELGVTTVGDLLKFSEDK---LQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ N LG+ T D+ DK L+ + + + NI GI V + KS +
Sbjct: 383 MLNALGIVTGADIY----DKRGLLRLMFSKCSYDYFMNICLGIGSCTVHSEWERKSISTE 438
Query: 122 KSFPGPRALKTVASVQHW----LNQLCEELSERLCSDLEQN--KRIAHTLTLHASAFK 173
++FP W L Q C +L L ++E++ K TL L SAF+
Sbjct: 439 RTFPDI-----------WKPSELFQKCHKLCYSLTEEVEESNIKGKTVTLKLKTSAFE 485
>gi|449526993|ref|XP_004170497.1| PREDICTED: uncharacterized protein LOC101223824 [Cucumis sativus]
Length = 107
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 434 CLSESNQNQVNIPKERLAEAATTSTSTDRCGSDQIQQRSESWKLRIEEIDPSVIDELPKE 493
CL S NQ+ + + +S R SD Q E W +++EID SVI+ELP E
Sbjct: 15 CLLLSAFNQIKKYTDFIYIVPDGHSSELRL-SDHGAQGGEIWNYKVDEIDISVIEELPPE 73
Query: 494 IQDEIQAWLRPSKRPHRVKQGFTIADYFSPSKN 526
IQ E+ +WLRP KR + +G TIA YF PSK+
Sbjct: 74 IQKELWSWLRPHKRSNTANRGSTIARYFLPSKS 106
>gi|15677305|ref|NP_274460.1| DNA polymerase IV [Neisseria meningitidis MC58]
gi|22095639|sp|Q9JYS8.1|DPO4_NEIMB RecName: Full=DNA polymerase IV; Short=Pol IV
gi|7226689|gb|AAF41808.1| DNA-damage-inducible protein P [Neisseria meningitidis MC58]
Length = 318
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|365090420|ref|ZP_09328468.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
gi|363416519|gb|EHL23629.1| DNA-directed DNA polymerase [Acidovorax sp. NO-1]
Length = 405
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 4/165 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T TCS G+A N++LAK+AS NKP + V ++G + L ++K+ +G K G
Sbjct: 156 IFEKTGLTCSIGVAPNRLLAKMASEFNKPNGISIVYEEDLQGKIWPLNVRKINGIGPKAG 215
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L LG+ T+G L L +G +TG W+ +A G V P S
Sbjct: 216 EKLAR-LGIETIGQLAAQDAQWLMGHFGKSTGAWMHRVAWGRDESPVVTESEPVSMSRET 274
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F R L V + L+ + +L +R+ DL++ +A T+ +
Sbjct: 275 TF--DRDLHAVRD-RAELSAIFTDLCQRVAEDLQRKGYVARTIGI 316
>gi|390937464|ref|YP_006395023.1| DNA polymerase IV [Bifidobacterium bifidum BGN4]
gi|389891077|gb|AFL05144.1| DNA polymerase IV [Bifidobacterium bifidum BGN4]
Length = 430
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V TCS G+A NK++AK+AS KP +P + + +P++ + +G L
Sbjct: 147 EVASRFHVTCSVGVAANKLVAKMASTNAKPDGMLLIPVARHAEFVQMMPLRGIPGIGPSL 206
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARGISGEEVQARLLPKSHGS 120
L E GV TV DL K SE L + G T L+ ARG+ V KS GS
Sbjct: 207 ERRLA-EWGVKTVADLAKMSEQTLATAIGSQTMAHGLYMAARGMDERAVTPYTPEKSIGS 265
Query: 121 GKSFP-GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+FP R ++ V + L + C+E++ S L + +A T+T+
Sbjct: 266 ESTFPEDTRDMRRVCDL---LRRCCDEVA----SSLRRRGLVARTVTV 306
>gi|302765499|ref|XP_002966170.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
gi|300165590|gb|EFJ32197.1| hypothetical protein SELMODRAFT_407478 [Selaginella moellendorffii]
Length = 629
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ + T T SAGI+ N +LA+LA+ KP Q + + + +LP++++ +G L
Sbjct: 381 EIFEATRCTASAGISANILLARLATKKAKPNGQFQIHLQEAEEFMMNLPVEELPGVGWVL 440
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L + L + T DL + + L++ +G TG L+N ARGI +VQA KS G+
Sbjct: 441 REKL-HALKLFTCSDLRLLTSETLRKHFGAKTGETLYNHARGIDHRKVQAPQEKKSIGAE 499
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
++ G R T A Q++L L EE++ RL
Sbjct: 500 VNW-GVR-FSTPADAQNFLVTLSEEVASRL 527
>gi|295113692|emb|CBL32329.1| Nucleotidyltransferase/DNA polymerase involved in DNA repair
[Enterococcus sp. 7L76]
Length = 372
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 90/208 (43%), Gaps = 12/208 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E + TCSAG+++NK LAKLAS KP T V + L +LPI+ +G K +
Sbjct: 149 ELQLTCSAGVSYNKFLAKLASDFQKPKGLTVVLPEEAEDFLKALPIEDFHGIGEKTVPKM 208
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ELG+ T DL K E L +G G L+ RGI VQ KS G ++
Sbjct: 209 -HELGIFTGADLYKQDEMTLIRLFG-KMGYSLYRKVRGIHDAPVQVTRDRKSVGKEHTYG 266
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFP- 184
P L T V L QL + L++ ++ T+ L + R P
Sbjct: 267 TP--LTTEEQVTAQLRQLAAGVEHA----LQRVQKHGKTVVLKVRYTDYTTITKRVTLPE 320
Query: 185 --SKSCPLRYGTAKIQEDTFNLFQAGLR 210
SK L Y I ED L Q G+R
Sbjct: 321 YISKKEELFYQANLIWEDILGLEQ-GIR 347
>gi|404406098|ref|ZP_10997682.1| nucleotidyltransferase/DNA polymerase involved in DNA repair
[Alistipes sp. JC136]
Length = 353
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET T SAGI+ NKMLAK+AS KP +P + + LP+++ + G++
Sbjct: 125 RIRAETGLTASAGISVNKMLAKIASDYRKPDGLFVIPPDRIDAFVAELPVERFFGI-GEV 183
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ T DL ++ E +L +G G + ARGI V + KS G+
Sbjct: 184 TAEKMHALGIRTGADLRQWEELELVRHFG-KAGRSYYGYARGIDPRPVVPNRIRKSLGAE 242
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
+F A + V + L Q+CEE+ RL
Sbjct: 243 TTFEADTADREVLLGE--LEQVCEEVWRRLV 271
>gi|315428105|dbj|BAJ49692.1| DNA polymerase IV [Candidatus Caldiarchaeum subterraneum]
Length = 392
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCS GI N+++AK+A+ +KP T V +++ L LP+K + +G K S+ E
Sbjct: 171 LTCSVGIGPNRVVAKMAADYSKPDGLTVVKPENLEEFLSDLPVKNLPGIGAK-TESILAE 229
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
+ TVGDL + S +KL+E +G +L+ +RGI E ++ R P P+
Sbjct: 230 HQIKTVGDLSRQSLEKLEELFGPKKAQYLYLASRGIYDEVIEER------------PPPK 277
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC 188
L + +++ ++ EE+ E L + Q + AS +R + ++
Sbjct: 278 QLSKIVTLKRNTREV-EEVMETLAAAASQAYTRLASAKFFASKIGLIAITTRLETITRQA 336
Query: 189 PLRYGTAKIQE--DTFNLFQAGLREFLGSFGVKTQGSHYSGWR 229
+R+G A + E T + L E ++ G ++G +
Sbjct: 337 DIRFG-ASLDEVLRTLRILLTKLLETDEKMMLRRVGVRFTGLK 378
>gi|187929043|ref|YP_001899530.1| DNA polymerase IV [Ralstonia pickettii 12J]
gi|187725933|gb|ACD27098.1| DNA-directed DNA polymerase [Ralstonia pickettii 12J]
Length = 357
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +E T SAG+A NK +AK+AS NKP V + + LP+ ++ + GK+
Sbjct: 129 RVREEIGITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQIDAFVAELPVDRLFGV-GKV 187
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG T GDL + D+LQ+ +G G L ++ RGI +VQ + KS
Sbjct: 188 TAAKLRRLGAETCGDLRAWGTDRLQQHFGV-FGFRLHDLCRGIDHRQVQPSQIRKSVSVE 246
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERL 151
+++ L+T+ Q L L E+L+ R+
Sbjct: 247 ETYATD--LRTLDDCQRELIILVEQLAARV 274
>gi|315427025|dbj|BAJ48642.1| DNA polymerase IV [Candidatus Caldiarchaeum subterraneum]
gi|343485693|dbj|BAJ51347.1| DNA polymerase IV [Candidatus Caldiarchaeum subterraneum]
Length = 363
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 17/223 (7%)
Query: 9 FTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNE 68
TCS GI N+++AK+A+ +KP T V +++ L LP+K + +G K S+ E
Sbjct: 142 LTCSVGIGPNRVVAKMAADYSKPDGLTVVKPENLEEFLSDLPVKNLPGIGAK-TESILAE 200
Query: 69 LGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPR 128
+ TVGDL + S +KL+E +G +L+ +RGI E ++ R P P+
Sbjct: 201 HQIKTVGDLSRQSLEKLEELFGPKKAQYLYLASRGIYDEVIEER------------PPPK 248
Query: 129 ALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSC 188
L + +++ ++ EE+ E L + Q + AS +R + ++
Sbjct: 249 QLSKIVTLKRNTREV-EEVMETLAAAASQAYTRLASAKFFASKIGLIAITTRLETITRQA 307
Query: 189 PLRYGTAKIQE--DTFNLFQAGLREFLGSFGVKTQGSHYSGWR 229
+R+G A + E T + L E ++ G ++G +
Sbjct: 308 DIRFG-ASLDEVLRTLRILLTKLLETDEKMMLRRVGVRFTGLK 349
>gi|417331453|ref|ZP_12115694.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353585430|gb|EHC45268.1| DNA polymerase 4 [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 298
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+ +G
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIPGVGKVSA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+N +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 190 AKLEN-MGLRTCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIA 162
+ + W + CE + E L +LE+ I
Sbjct: 248 TL--------AEDIHEWSD--CEAIIEHLYPELERRLAIV 277
>gi|383816275|ref|ZP_09971676.1| DNA polymerase IV [Serratia sp. M24T3]
gi|383294936|gb|EIC83269.1| DNA polymerase IV [Serratia sp. M24T3]
Length = 352
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 18/225 (8%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E T SAGIA K LAK+AS +NKP Q + V L LP+ K+ +G
Sbjct: 130 IFDELNLTASAGIAPIKFLAKIASDLNKPNGQFVITPDKVADFLQDLPLAKIPGVGKVTA 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L+++ G+ T GD+ ++ L + +G G LW +GI E+ + L KS G +
Sbjct: 190 RKLEDQ-GLMTCGDVQRYDLALLLKRFG-KFGRVLWERCQGIDEREISSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN-KRIAHTLTLHASAFKSSDSDSRK 181
+ + W + C EL +RL +LE R++ +L + K D ++
Sbjct: 248 TL--------AEDIHDW--ESCVELIDRLYPELETRLTRVSPSLRIARQGVKLKFHDFQQ 297
Query: 182 KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
P+ + D + Q G GV+ G H +
Sbjct: 298 TTQEHVWPVLN-----KADLLKVAQEAWEMRRGGRGVRLVGLHVT 337
>gi|400290800|ref|ZP_10792827.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
gi|399921591|gb|EJN94408.1| DNA polymerase IV [Streptococcus ratti FA-1 = DSM 20564]
Length = 368
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E TCSAG+++NK LAKLAS NKP T + + L LPI+K +G K L
Sbjct: 146 ELHLTCSAGVSYNKFLAKLASDYNKPRGLTVILPDEAEEFLADLPIEKFYGVGKKSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
+EL V T DL + E L + +G G L+ ARGIS V+ + KS GS +++
Sbjct: 206 -HELNVFTGKDLQQIPEMTLIDLFG-RFGFDLYRKARGISNSPVKNNRIRKSIGSERTY 262
>gi|420182004|ref|ZP_14688147.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM049]
gi|394250677|gb|EJD95856.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM049]
Length = 356
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTSLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|418325978|ref|ZP_12937175.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU071]
gi|365227009|gb|EHM68217.1| ImpB/MucB/SamB family protein [Staphylococcus epidermidis VCU071]
Length = 356
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTSLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|121635137|ref|YP_975382.1| DNA polymerase IV [Neisseria meningitidis FAM18]
gi|385340339|ref|YP_005894211.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|416178473|ref|ZP_11610615.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|416192460|ref|ZP_11616642.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|416203316|ref|ZP_11620044.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|421542743|ref|ZP_15988849.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|433467593|ref|ZP_20425047.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|433492845|ref|ZP_20449935.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|433494972|ref|ZP_20452039.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|433497141|ref|ZP_20454176.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|433499204|ref|ZP_20456211.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|433501175|ref|ZP_20458160.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|433503328|ref|ZP_20460288.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
gi|189027672|sp|A1KUQ3.1|DPO4_NEIMF RecName: Full=DNA polymerase IV; Short=Pol IV
gi|120866843|emb|CAM10601.1| impB/mucB/samB family protein [Neisseria meningitidis FAM18]
gi|325132193|gb|EGC54889.1| DNA polymerase IV [Neisseria meningitidis M6190]
gi|325138126|gb|EGC60699.1| DNA polymerase IV [Neisseria meningitidis ES14902]
gi|325142626|gb|EGC65017.1| DNA polymerase IV [Neisseria meningitidis 961-5945]
gi|325198583|gb|ADY94039.1| DNA polymerase IV [Neisseria meningitidis G2136]
gi|402316662|gb|EJU52204.1| DNA polymerase IV [Neisseria meningitidis NM255]
gi|432202427|gb|ELK58491.1| impB/mucB/samB family protein [Neisseria meningitidis 87255]
gi|432227708|gb|ELK83416.1| impB/mucB/samB family protein [Neisseria meningitidis NM586]
gi|432229620|gb|ELK85305.1| impB/mucB/samB family protein [Neisseria meningitidis NM762]
gi|432233226|gb|ELK88858.1| impB/mucB/samB family protein [Neisseria meningitidis M7089]
gi|432233631|gb|ELK89257.1| impB/mucB/samB family protein [Neisseria meningitidis M7124]
gi|432235148|gb|ELK90765.1| impB/mucB/samB family protein [Neisseria meningitidis NM174]
gi|432239638|gb|ELK95186.1| impB/mucB/samB family protein [Neisseria meningitidis NM126]
Length = 352
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
>gi|420186105|ref|ZP_14692179.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM040]
gi|394252809|gb|EJD97832.1| putative DNA polymerase IV [Staphylococcus epidermidis NIHLM040]
Length = 356
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + T T SAG+++NK LAKLASGMNKP T + +++V +L L I + GK
Sbjct: 132 IYEVTSLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
++ + T DL E +L +G G L+N ARGI EV+A + KS G+ +
Sbjct: 191 KKKMHQHHIYTGQDLYNKDEFELIRLFG-KRGRGLYNKARGIDHNEVKASRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>gi|319788065|ref|YP_004147540.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317466577|gb|ADV28309.1| DNA-directed DNA polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 364
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 19/235 (8%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ ET T SAG+A NK LAK+AS NKP + V+ L LP++++ +G +
Sbjct: 136 KIRAETGLTASAGVAPNKFLAKIASDWNKPDGLFVIRPQHVERFLTPLPVERIPGVGKVM 195
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L ELG+ TVG+L ++LQ+ +G + G L+ ARGI V+ +S S
Sbjct: 196 QGKL-AELGIATVGELRSRPLEELQQRFG-SFGAALYRRARGIDERPVEPDQPVRSVSSE 253
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHT--LTLHASAFKS-SDSD 178
+F G L+ L +L+E+ + + R HT L L + F+ + S
Sbjct: 254 DTFAGDLPLEA-------LEPAIRQLAEKTWNASRRAGRDGHTVVLKLKTAQFRILTRSL 306
Query: 179 SRKKFPSK-------SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYS 226
+ ++ P+ +C LR + E + L GL F + QG ++
Sbjct: 307 TLERPPASAAELADLACALRERVSLPAETRYRLVGVGLSGFRDADEAMPQGDLFA 361
>gi|161504583|ref|YP_001571695.1| DNA polymerase IV [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|189027678|sp|A9MNS1.1|DPO4_SALAR RecName: Full=DNA polymerase IV; Short=Pol IV
gi|160865930|gb|ABX22553.1| hypothetical protein SARI_02697 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 351
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS +NKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDLNKPNGQYVITPADVPDFLKTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ + L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLESMGLITCGDIQQCDLAMLLKRFG-KFGRVLWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + W + CE + ERL +LE+
Sbjct: 248 TL--------AEDIHEWSD--CEAIIERLYPELERR 273
>gi|429770091|ref|ZP_19302173.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
gi|429185547|gb|EKY26522.1| putative DNA polymerase IV [Brevundimonas diminuta 470-4]
Length = 359
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T T SAGI++NK LAKLAS KP Q VP + + LP+K+ +G
Sbjct: 133 RILEATGLTASAGISYNKFLAKLASDQRKPNGQFVVPPGRGEAFVQDLPVKRFHGVGPVT 192
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
+ LG+ T DL S LQ +G +G W + IARG V KS GS
Sbjct: 193 AEKM-TRLGIETGADLRHQSLAFLQHHFG-KSGPWYYAIARGEDHRPVNPDRERKSSGSE 250
Query: 122 KSFPGPRALKTVASVQHWLNQLCEEL 147
+F R L +++ + ++ +E+
Sbjct: 251 TTF--ARDLVEPEAIEAGVEEMADEV 274
>gi|385323903|ref|YP_005878342.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|385328701|ref|YP_005883004.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|385850975|ref|YP_005897490.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|416169881|ref|ZP_11608241.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|416182644|ref|ZP_11612119.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|416187280|ref|ZP_11614150.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|416212875|ref|ZP_11622033.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|421551063|ref|ZP_15997063.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|421555045|ref|ZP_16000984.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|421556829|ref|ZP_16002739.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|421561526|ref|ZP_16007368.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|433471763|ref|ZP_20429146.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|433477892|ref|ZP_20435210.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|433488729|ref|ZP_20445887.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|433509644|ref|ZP_20466510.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|433511655|ref|ZP_20468478.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|433522170|ref|ZP_20478857.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|433526276|ref|ZP_20482906.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|433539224|ref|ZP_20495699.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
gi|261392290|emb|CAX49816.1| DNA polymerase IV (Pol IV) [Neisseria meningitidis 8013]
gi|308389553|gb|ADO31873.1| DNA-damage-inducible protein P [Neisseria meningitidis alpha710]
gi|325130510|gb|EGC53265.1| DNA polymerase IV [Neisseria meningitidis OX99.30304]
gi|325134571|gb|EGC57215.1| DNA polymerase IV [Neisseria meningitidis M13399]
gi|325136508|gb|EGC59112.1| DNA polymerase IV [Neisseria meningitidis M0579]
gi|325144732|gb|EGC67027.1| DNA polymerase IV [Neisseria meningitidis M01-240013]
gi|325205798|gb|ADZ01251.1| DNA polymerase IV [Neisseria meningitidis M04-240196]
gi|389605414|emb|CCA44332.1| DNA polymerase IV [Neisseria meningitidis alpha522]
gi|402328597|gb|EJU63964.1| DNA polymerase IV [Neisseria meningitidis 69166]
gi|402332198|gb|EJU67529.1| DNA polymerase IV [Neisseria meningitidis 98008]
gi|402336083|gb|EJU71345.1| DNA polymerase IV [Neisseria meningitidis 80179]
gi|402337822|gb|EJU73068.1| impB/mucB/samB family protein [Neisseria meningitidis NM2657]
gi|432207720|gb|ELK63708.1| impB/mucB/samB family protein [Neisseria meningitidis 68094]
gi|432214708|gb|ELK70604.1| impB/mucB/samB family protein [Neisseria meningitidis 70012]
gi|432222595|gb|ELK78386.1| impB/mucB/samB family protein [Neisseria meningitidis M13255]
gi|432246145|gb|ELL01602.1| impB/mucB/samB family protein [Neisseria meningitidis 12888]
gi|432246416|gb|ELL01864.1| impB/mucB/samB family protein [Neisseria meningitidis 4119]
gi|432258548|gb|ELL13830.1| impB/mucB/samB family protein [Neisseria meningitidis 61103]
gi|432261040|gb|ELL16297.1| impB/mucB/samB family protein [Neisseria meningitidis 69096]
gi|432272947|gb|ELL28049.1| impB/mucB/samB family protein [Neisseria meningitidis 70030]
Length = 352
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ET T SAGIA NK LAK+AS KP Q +P V L++LP+ K+ + GK+
Sbjct: 131 IFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGV-GKVT 189
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQA 111
LG+ T GDL +F +L +G G L+++ RG V+A
Sbjct: 190 LKKMQSLGMRTAGDLRRFERGELLNHFG-RYGYRLYDLVRGTDERPVKA 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,292,570,886
Number of Sequences: 23463169
Number of extensions: 348378492
Number of successful extensions: 854718
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 2938
Number of HSP's that attempted gapping in prelim test: 842491
Number of HSP's gapped (non-prelim): 9915
length of query: 527
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 380
effective length of database: 8,910,109,524
effective search space: 3385841619120
effective search space used: 3385841619120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 79 (35.0 bits)