BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009729
(527 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y253|POLH_HUMAN DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1
Length = 713
Score = 169 bits (427), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/205 (43%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +ET F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG
Sbjct: 204 IERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLG 263
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
S+ LG+ +G+L +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K
Sbjct: 264 ASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSK 323
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKK 182
+FPG AL T VQ WL QL +EL ERL D N R+A L + D R
Sbjct: 324 NFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRV----QGDKRLS 379
Query: 183 FPSKSCPL-RYGTAKIQEDTFNLFQ 206
+ C L RY K+ D F + +
Sbjct: 380 SLRRCCALTRYDAHKMSHDAFTVIK 404
>sp|Q9JJN0|POLH_MOUSE DNA polymerase eta OS=Mus musculus GN=Polh PE=1 SV=1
Length = 694
Score = 149 bits (377), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+T F CSAGI+HNK+LAKLA G+NKP +QT V SV L +PI+K++ LGGKLG S+
Sbjct: 206 KTGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASV 265
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
LG+ +GDL +F+E +LQ +G G+WL+ + RGI + V+ R LPK+ G K+FP
Sbjct: 266 IEVLGIEYMGDLTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFP 325
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPS 185
G AL T VQ WL QL EL ERL D N R+A L + D R
Sbjct: 326 GKTALATREQVQWWLLQLALELEERLTKDRNDNDRVATQLVVSIRF----QGDRRLSSLR 381
Query: 186 KSCPL-RYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 244
+ C L RY K+ +D F A +R + G++T+ S +T L + A+K
Sbjct: 382 RCCALPRYDAHKMSQDAF----AAIRN-CNTSGIQTEWSP----PLTMLFLCATKFSAAA 432
Query: 245 SGTCSIMKYFNGPD 258
C+ + F D
Sbjct: 433 PPACTDITAFLSSD 446
>sp|O42917|ESO1_SCHPO N-acetyltransferase eso1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=eso1 PE=1 SV=1
Length = 872
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ + ++TCSAG++ N ML+KL S NKP +QT + ++++ L SL I ++ LGGK G
Sbjct: 230 IYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNAIQDYLVSLKITDIRMLGGKFG 289
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ N LG ++ D+ S D L + G G +WN+ GI E+ ++ KS S K
Sbjct: 290 EEIINLLGTDSIKDVWNMSMDFLIDKLGQTNGPLVWNLCHGIDNTEITTQVQIKSMLSAK 349
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160
+F + +K+ +W +L R +LE +R
Sbjct: 350 NF-SQQKVKSEEDAINWFQVFASDLRSRFL-ELEGMRR 385
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 13/238 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++L+ T + SAGI ++A+LA+ + KPA Q + V+ LD LP+ + +G L
Sbjct: 500 EILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLPGVGSVL 559
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGS- 120
L + + T G L S+D LQ+ +G TG LW+ +RG+ V A KS G+
Sbjct: 560 KEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQESKSIGAE 618
Query: 121 ---GKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDS 177
G F + + + VQH+L LC+E+S R L+ + I T TL K
Sbjct: 619 VNWGVRFRDQQDVFIL--VQHFLQCLCKEVSLR----LQGCEMIGRTFTLKIKKRKKDAE 672
Query: 178 DSRKKFPSKSCP--LRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233
+ K C R T D + Q ++ GSF + + G +++ L
Sbjct: 673 EPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLFGSFCLDVKEVRGVGLQVSKL 730
>sp|Q8DXW9|DPO4_STRA5 DNA polymerase IV OS=Streptococcus agalactiae serotype V (strain
ATCC BAA-611 / 2603 V/R) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q8E3I8|DPO4_STRA3 DNA polymerase IV OS=Streptococcus agalactiae serotype III (strain
NEM316) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q3JZG9|DPO4_STRA1 DNA polymerase IV OS=Streptococcus agalactiae serotype Ia (strain
ATCC 27591 / A909 / CDC SS700) GN=dinB PE=3 SV=1
Length = 364
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
+ TCSAGI++NK LAKLAS KP T + + L LPI+K +G + L
Sbjct: 146 DVHLTCSAGISYNKFLAKLASDFEKPKGLTLILPDQAQDFLKPLPIEKFHGVGKRSVEKL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LGV T DLL SE L + +G G L+ ARGI+ V+ + KS GS K++
Sbjct: 206 -HALGVYTGEDLLSLSEISLIDMFG-RFGYDLYRKARGINASPVKPDRVRKSIGSEKTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L A ++ +++ +R+ + LE+NK++ T+ L
Sbjct: 263 -GKLLYNEADIKAEISKNV----QRVVASLEKNKKVGKTIVL 299
>sp|Q6GFG2|DPO4_STAAR DNA polymerase IV OS=Staphylococcus aureus (strain MRSA252) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYRNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSTRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|P58964|DPO4_STAAW DNA polymerase IV OS=Staphylococcus aureus (strain MW2) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|Q6G838|DPO4_STAAS DNA polymerase IV OS=Staphylococcus aureus (strain MSSA476) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|A6QIC3|DPO4_STAAE DNA polymerase IV OS=Staphylococcus aureus (strain Newman) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|Q5HEM7|DPO4_STAAC DNA polymerase IV OS=Staphylococcus aureus (strain COL) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
NCTC 8237 / Type A) GN=dinB PE=3 SV=1
Length = 359
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ KE T SAG++ NK LAK+AS KP T + + K + ++PI K +G
Sbjct: 132 RIFKEVGLTASAGVSFNKFLAKMASDFRKPDGITVITEENSKDFIRNIPIGKFFGVGRVT 191
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L N +GV DLLKFSE++L + + + G L+ ARGI V + KS G
Sbjct: 192 KNKLNN-IGVFKGEDLLKFSEEELIDIFS-DRGKILYEFARGIDNRPVNPYRIRKS--IG 247
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLC 152
K ++ + + L ++ E +SE LC
Sbjct: 248 KEITLREDIEDIDEMIEILERIAERVSESLC 278
>sp|Q2YU32|DPO4_STAAB DNA polymerase IV OS=Staphylococcus aureus (strain bovine RF122 /
ET3-1) GN=dinB PE=3 SV=1
Length = 328
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L+ T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILENTHLTASAGVSYNKFLAKLASGMNKPYGMTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|Q5LYC2|DPO4_STRT1 DNA polymerase IV OS=Streptococcus thermophilus (strain CNRZ 1066)
GN=dinB PE=3 SV=1
Length = 367
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L+ LPI+K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQDFLEKLPIEKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>sp|B4SIF5|DPO4_STRM5 DNA polymerase IV OS=Stenotrophomonas maltophilia (strain R551-3)
GN=dinB PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET+ T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETQLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLLPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARG+ V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGVDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+E+ + + +R+ HT+ L
Sbjct: 249 DTFAEDLPLED-------LGEAIVQLAEKTWNATRKTERVGHTVVL 287
>sp|P58963|DPO4_ESCFE DNA polymerase IV (Fragment) OS=Escherichia fergusonii GN=dinB PE=3
SV=1
Length = 331
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAGIA K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 119 IFNELQLTASAGIAPVKFLAKIASDMNKPNGQFVITPADVPAFLQTLPLAKIPGV-GKVS 177
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 178 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 236
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 237 TM--------AEDIHHWSE--CEAIIERLYPELERR 262
>sp|A5IU61|DPO4_STAA9 DNA polymerase IV OS=Staphylococcus aureus (strain JH9) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|A6U2Z9|DPO4_STAA2 DNA polymerase IV OS=Staphylococcus aureus (strain JH1) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|P63992|DPO4_STAAN DNA polymerase IV OS=Staphylococcus aureus (strain N315) GN=dinB
PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|P63991|DPO4_STAAM DNA polymerase IV OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=dinB PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|A7X420|DPO4_STAA1 DNA polymerase IV OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=dinB PE=3 SV=1
Length = 356
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+L++T T SAG+++NK LAKLASGMNKP T + + +V +L +L I + GK
Sbjct: 132 ILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGV-GKAS 190
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ ++ G+ DL + +E +L +G G L+N ARGI EV++ + KS G+ +
Sbjct: 191 KKVMHDNGIFNGRDLYEKTEFELIRLFG-KRGRGLYNKARGIDHSEVKSSRVRKSVGTER 249
Query: 123 SF 124
+F
Sbjct: 250 TF 251
>sp|A4VZ21|DPO4_STRS2 DNA polymerase IV OS=Streptococcus suis (strain 98HAH33) GN=dinB
PE=3 SV=1
Length = 355
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++NK LAK+AS M KP T + G+L SLP++K +G K L
Sbjct: 146 ELHLTASAGVSYNKFLAKIASDMEKPHGLTLILPEDAVGILASLPVEKFHGVGKKTVERL 205
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+E+GV T DLL E L + +G G L+ ARGIS V+ + KS G +++
Sbjct: 206 -HEMGVYTGQDLLDVPEMVLIDRFG-RFGFDLYRKARGISNSPVKVDRVRKSSGKERTY- 262
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ L V L LC +R+ + L++N + T+ L
Sbjct: 263 -RKLLYREEDVLKELISLC----QRVAASLKRNGKKGRTIVL 299
>sp|Q67QM6|DPO4_SYMTH DNA polymerase IV OS=Symbiobacterium thermophilum (strain T / IAM
14863) GN=dinB PE=3 SV=1
Length = 361
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 6 ETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSL 65
E T SAG+++ K LAKLAS M KP T + + + LL +LP++K+ +G +L
Sbjct: 131 ELHLTGSAGVSYCKFLAKLASDMQKPDGLTVITWERAQELLPTLPVRKLWGVGPASEQAL 190
Query: 66 QNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFP 125
+ LG+ T GDLL + D L++ +G L +ARGI V KS G +FP
Sbjct: 191 -HALGIYTCGDLLAYDPDTLRKHFG-KRADELILLARGIDPRPVVPYREAKSIGEENTFP 248
Query: 126 GPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + +L++L E ++ L +L + A T+T+
Sbjct: 249 ------VDQTDREYLSRLLERYADNLAEELRRQGLYARTVTV 284
>sp|Q1RFU0|DPO4_ECOUT DNA polymerase IV OS=Escherichia coli (strain UTI89 / UPEC) GN=dinB
PE=3 SV=1
Length = 351
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q0TL85|DPO4_ECOL5 DNA polymerase IV OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A1A7U2|DPO4_ECOK1 DNA polymerase IV OS=Escherichia coli O1:K1 / APEC GN=dinB PE=3
SV=1
Length = 351
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVTLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q83M86|DPO4_SHIFL DNA polymerase IV OS=Shigella flexneri GN=dinB PE=3 SV=1
Length = 351
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP++K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLEKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q3Z5A4|DPO4_SHISS DNA polymerase IV OS=Shigella sonnei (strain Ss046) GN=dinB PE=3
SV=1
Length = 351
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q47155|DPO4_ECOLI DNA polymerase IV OS=Escherichia coli (strain K12) GN=dinB PE=1
SV=1
Length = 351
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B1J100|DPO4_ECOLC DNA polymerase IV OS=Escherichia coli (strain ATCC 8739 / DSM 1576
/ Crooks) GN=dinB PE=3 SV=1
Length = 351
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|B2U3S3|DPO4_SHIB3 DNA polymerase IV OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=dinB PE=3 SV=1
Length = 354
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 133 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 191
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 192 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 251 TM--------AEDIHHWSE--CEAIIERLYPELERR 276
>sp|A9A3A9|DPO4_NITMS DNA polymerase IV OS=Nitrosopumilus maritimus (strain SCM1) GN=dbh
PE=3 SV=1
Length = 364
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ ++T+ +CS GI+ NK+++K+AS KP T V V+G L+SL I+ + +G K
Sbjct: 139 IREKTKLSCSIGISPNKLISKIASDFQKPDGLTIVSPEKVEGFLESLKIRDIPGIGKKTE 198
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHG 119
E+ + T+GD+ + L + +G +GT+++N RGI E V+ R HG
Sbjct: 199 QRF-TEMNLETIGDVKRLDVFTLNKEFGRKSGTYIYNAVRGIDDELVKEREPSIQHG 254
>sp|A7ZHZ2|DPO4_ECO24 DNA polymerase IV OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=dinB PE=3 SV=1
Length = 351
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVMLLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A3CSG3|DPO4_METMJ DNA polymerase IV OS=Methanoculleus marisnigri (strain ATCC 35101 /
DSM 1498 / JR1) GN=dbh PE=3 SV=1
Length = 360
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 4/153 (2%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
+V +ET TCS G+A K +AK+AS KP T V V G L SLP+ ++ +G K
Sbjct: 135 EVREETGLTCSVGVAPGKAVAKIASDFQKPDGLTIVRPDEVAGFLASLPVGRIPGIGKKT 194
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
G L+ + G+ TVGDL + ++ G +G + ++ARGI EVQ R KS
Sbjct: 195 GEDLR-QAGILTVGDLARRDVQEVIARLG-RSGVRVHHLARGIDDGEVQGREGCKSISRE 252
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSD 154
+F A V + L +L ++++E L +D
Sbjct: 253 TTFEADTADPPV--LAGTLAELADDVAETLRAD 283
>sp|P59477|DPO4_ECOL6 DNA polymerase IV OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=dinB PE=3 SV=1
Length = 351
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q32J17|DPO4_SHIDS DNA polymerase IV OS=Shigella dysenteriae serotype 1 (strain Sd197)
GN=dinB PE=3 SV=1
Length = 351
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFNELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAIGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|A7ZWJ6|DPO4_ECOHS DNA polymerase IV OS=Escherichia coli O9:H4 (strain HS) GN=dinB
PE=3 SV=1
Length = 351
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+A K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q18A91|DPO4_CLOD6 DNA polymerase IV OS=Clostridium difficile (strain 630) GN=dinB
PE=3 SV=1
Length = 365
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 7/165 (4%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E T SAG+++NK LAK+AS + KP T + + + LD LP+ K +G
Sbjct: 133 IFREVGLTSSAGVSYNKFLAKIASDLRKPNGLTVITEENAQDFLDKLPVNKFFGVGKVTS 192
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+L+N LG+ T DL + +L+ + G L+ ARGI V+ + KS G+
Sbjct: 193 NTLKN-LGIKTGYDLRCLNLFELENIFK-KRGYELYKFARGIDDRPVEPNRVRKSVGAET 250
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+ + ++ L++LCEE +C L+ +++ TLTL
Sbjct: 251 TLSHNLDIDE-EETRNILDELCEE----VCHRLKNSEKFGKTLTL 290
>sp|P58965|DPO4_THETN DNA polymerase IV OS=Thermoanaerobacter tengcongensis (strain DSM
15242 / JCM 11007 / NBRC 100824 / MB4) GN=dinB PE=3 SV=1
Length = 384
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 19/243 (7%)
Query: 7 TEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQ 66
T T S GI++NK LAKLAS NKP + V +L LP+ K+ +G K L+
Sbjct: 131 TGLTVSVGISYNKFLAKLASDWNKPDGLMVITEDMVPEILKPLPVTKVHGIGEKSAEKLR 190
Query: 67 NELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPG 126
+ +G+ TV DLLK ++ L E +G TG ++N RGI V+ KS G K+
Sbjct: 191 S-IGIETVEDLLKLPQENLIELFG-KTGVEIYNRIRGIDERPVETMREIKSIGKEKT--- 245
Query: 127 PRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTLHASAFKSSDSDSRKKFPSK 186
L+ + L Q +E SE + +L + + T+T+ K++D K +
Sbjct: 246 ---LEKDTKNKELLIQHLKEFSEIVSEELIKERLYCRTVTVK---IKTADFAVHTKSKTV 299
Query: 187 SCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQG---SHYSGWRITALSVSASKIVPV 243
+R+ ED + + + L E+ V+ G S+ S + LS ++V V
Sbjct: 300 DKYIRFS-----EDIYEVAKGILEEWKLEQYVRLIGLSVSNLSPVKYEQLSFLDKRLVKV 354
Query: 244 LSG 246
+
Sbjct: 355 IKA 357
>sp|B2FLR2|DPO4_STRMK DNA polymerase IV OS=Stenotrophomonas maltophilia (strain K279a)
GN=dinB PE=3 SV=1
Length = 364
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
Q+ +ET T SAGIA NK LAK+AS KP Q +P V L LP+ ++ +G +
Sbjct: 131 QIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVM 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L G+ T GDL +++ L+E++G + G L+N ARGI V+ +S S
Sbjct: 191 EGKLAAR-GIVTCGDLRQWALIDLEEAFG-SFGRSLYNRARGIDERPVEPDQQVQSISSE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
+F L+ L + +L+ + + + +RI HT+ L
Sbjct: 249 DTFAEDLLLED-------LTEAIVQLAGKTWNATRKTERIGHTVVL 287
>sp|Q5M2Y5|DPO4_STRT2 DNA polymerase IV OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=dinB PE=3 SV=1
Length = 367
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>sp|Q03J54|DPO4_STRTD DNA polymerase IV OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=dinB PE=3 SV=1
Length = 367
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ +E TCSAG+++NK +AKLAS KPA T V + L LPI K +G K
Sbjct: 143 IWQELHLTCSAGVSYNKFIAKLASDFQKPAGLTVVLPEEAQEFLKKLPIAKFHGVGKKSV 202
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
L +++ + T DLLK SE L + +G G L+ ARGIS V+ + KS GS +
Sbjct: 203 ERL-HDMDIYTGADLLKISEITLIDRFG-RFGFDLFRKARGISNSPVKPNRVRKSIGSER 260
Query: 123 SF 124
++
Sbjct: 261 TY 262
>sp|A1WY69|DPO4_HALHL DNA polymerase IV OS=Halorhodospira halophila (strain DSM 244 /
SL1) GN=dinB PE=3 SV=1
Length = 356
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 8/166 (4%)
Query: 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKL 61
++ +ET T SAG+++NK+LAKLAS KP VP + + PI+++ +G
Sbjct: 131 RIREETGLTASAGVSYNKLLAKLASDEGKPDGLYVVPPEDGPAYVAAQPIRRLHGVGPAT 190
Query: 62 GTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSG 121
L+ LG+ VGDLL + L G GT L + ARGI V+ R KS G+
Sbjct: 191 AARLER-LGIRQVGDLLDWELADLHVFLGNRAGT-LHDAARGIDHRPVRPRRSRKSIGAE 248
Query: 122 KSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLTL 167
++F + + + L L +++ R LE ++ +A T+TL
Sbjct: 249 RTFGDD--TRDLGEIHQRLAPLITKVATR----LEHHELVARTVTL 288
>sp|P0DA79|DPO4_STRPQ DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=dinB PE=3 SV=1
Length = 365
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|P0DA78|DPO4_STRP3 DNA polymerase IV OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=dinB PE=3 SV=1
Length = 365
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVVALLQDHKKLGKTIVL 299
>sp|Q8X7Q1|DPO4_ECO57 DNA polymerase IV OS=Escherichia coli O157:H7 GN=dinB PE=3 SV=1
Length = 351
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 12/156 (7%)
Query: 3 VLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLG 62
+ E + T SAG+ K LAK+AS MNKP Q + + V L +LP+ K+ + GK+
Sbjct: 130 IFSELQLTASAGVTPVKFLAKIASDMNKPNGQFVITPAEVSAFLQTLPLAKIPGV-GKVS 188
Query: 63 TSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGK 122
+ +G+ T GD+ K L + +G G LW ++GI +V + L KS G +
Sbjct: 189 AAKLEAMGLRTCGDVQKCDLVILLKRFG-KFGRILWERSQGIDERDVNSERLRKSVGVER 247
Query: 123 SFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQN 158
+ + HW CE + ERL +LE+
Sbjct: 248 TM--------AEDIHHWSE--CEAIIERLYPELERR 273
>sp|Q8NZI1|DPO4_STRP8 DNA polymerase IV OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=dinB PE=3 SV=1
Length = 364
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|A2RCQ1|DPO4_STRPG DNA polymerase IV OS=Streptococcus pyogenes serotype M5 (strain
Manfredo) GN=dinB PE=3 SV=1
Length = 364
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
>sp|Q48RJ4|DPO4_STRPM DNA polymerase IV OS=Streptococcus pyogenes serotype M28 (strain
MGAS6180) GN=dinB PE=3 SV=1
Length = 364
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 5 KETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS 64
KE TCSAG+++NK LAKLAS KP T V L LPI+K +G K
Sbjct: 145 KEVGLTCSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKKSVEK 204
Query: 65 LQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSF 124
L +++G+ T DLL E L + +G G L+ ARGIS V++ + KS GS +++
Sbjct: 205 L-HDMGIYTGQDLLAVPEMTLIDHFG-RFGFDLYRKARGISNSPVKSDRIRKSIGSERTY 262
Query: 125 PGPRALKTVASVQHWLNQLCEELS---ERLCSDLEQNKRIAHTLTL 167
A + + + E+S +R+ + L+ +K++ T+ L
Sbjct: 263 ---------AKLLYQETDIKAEISKNAKRVAALLQDHKKLGKTIVL 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,899,352
Number of Sequences: 539616
Number of extensions: 8335166
Number of successful extensions: 20404
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 19729
Number of HSP's gapped (non-prelim): 472
length of query: 527
length of database: 191,569,459
effective HSP length: 122
effective length of query: 405
effective length of database: 125,736,307
effective search space: 50923204335
effective search space used: 50923204335
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)