Query 009729
Match_columns 527
No_of_seqs 227 out of 1577
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 11:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dez_A POL IV 1, DNA polymeras 100.0 2.4E-42 8.1E-47 358.1 10.2 215 2-243 131-346 (356)
2 3osn_A DNA polymerase IOTA; ho 100.0 4.5E-41 1.5E-45 356.8 20.0 225 2-244 186-417 (420)
3 3gqc_A DNA repair protein REV1 100.0 3.4E-41 1.1E-45 364.8 19.1 224 2-244 268-499 (504)
4 1jx4_A DNA polymerase IV (fami 100.0 7E-41 2.4E-45 346.6 14.3 220 2-255 131-351 (352)
5 4f4y_A POL IV, DNA polymerase 100.0 1.1E-40 3.7E-45 347.4 15.5 223 2-257 132-355 (362)
6 3bq0_A POL IV, DBH, DNA polyme 100.0 1.6E-40 5.5E-45 344.1 16.0 220 2-255 132-353 (354)
7 4ecq_A DNA polymerase ETA; tra 100.0 1.2E-39 4.1E-44 347.1 19.2 228 2-242 206-434 (435)
8 3pzp_A DNA polymerase kappa; D 100.0 2.5E-39 8.6E-44 351.5 18.5 219 2-244 289-509 (517)
9 3mfi_A DNA polymerase ETA; DNA 100.0 4.6E-39 1.6E-43 349.5 17.1 228 2-244 258-517 (520)
10 2aq4_A DNA repair protein REV1 100.0 8.7E-39 3E-43 340.2 16.8 222 2-242 192-433 (434)
11 1t94_A Polymerase (DNA directe 100.0 1.1E-39 3.8E-44 349.2 9.3 219 2-244 233-453 (459)
12 1im4_A DBH; DNA polymerase PAL 99.8 2.9E-21 9.9E-26 188.7 4.9 85 2-87 137-221 (221)
13 1unn_C POL IV, DNA polymerase 99.3 4.3E-12 1.5E-16 111.2 6.5 100 116-244 5-107 (115)
14 2a1j_A DNA repair endonuclease 96.6 0.0033 1.1E-07 49.4 5.8 51 51-103 6-57 (63)
15 1wcn_A Transcription elongatio 96.3 0.0024 8.1E-08 51.5 3.5 52 51-103 9-62 (70)
16 2kwv_A RAD30 homolog B, DNA po 95.7 0.0045 1.6E-07 45.8 2.3 21 480-500 14-34 (48)
17 1z00_B DNA repair endonuclease 95.6 0.01 3.6E-07 49.4 4.4 51 51-103 20-71 (84)
18 3bqs_A Uncharacterized protein 94.8 0.019 6.6E-07 48.7 3.6 35 50-85 5-39 (93)
19 3mab_A Uncharacterized protein 94.4 0.036 1.2E-06 47.1 4.3 34 50-84 5-38 (93)
20 2a1j_B DNA excision repair pro 93.0 0.13 4.4E-06 42.7 5.3 51 51-103 34-86 (91)
21 1kft_A UVRC, excinuclease ABC 92.8 0.067 2.3E-06 43.1 3.2 51 49-101 24-76 (78)
22 1z00_A DNA excision repair pro 92.7 0.12 4.2E-06 42.5 4.8 51 51-103 21-73 (89)
23 1z3e_B DNA-directed RNA polyme 92.5 0.16 5.4E-06 41.2 5.1 53 47-101 7-61 (73)
24 3gfk_B DNA-directed RNA polyme 91.8 0.13 4.6E-06 42.3 3.8 55 43-99 10-66 (79)
25 1b22_A DNA repair protein RAD5 91.4 0.091 3.1E-06 46.1 2.5 56 48-104 22-81 (114)
26 1vq8_Y 50S ribosomal protein L 90.8 0.045 1.5E-06 54.0 0.0 52 49-101 15-68 (241)
27 2khu_A Immunoglobulin G-bindin 90.1 0.11 3.7E-06 44.4 1.8 29 481-509 67-96 (108)
28 2nrt_A Uvrabc system protein C 90.0 0.29 1E-05 47.6 5.0 50 49-100 168-218 (220)
29 3k4g_A DNA-directed RNA polyme 87.9 0.67 2.3E-05 38.7 5.0 53 47-101 10-64 (86)
30 2va8_A SSO2462, SKI2-type heli 87.7 0.3 1E-05 54.0 3.7 52 49-102 657-708 (715)
31 2kz3_A Putative uncharacterize 86.7 1.7 5.7E-05 36.0 6.8 44 47-91 2-45 (83)
32 1pzn_A RAD51, DNA repair and r 86.4 0.7 2.4E-05 47.2 5.3 56 46-102 32-89 (349)
33 1x2i_A HEF helicase/nuclease; 86.0 0.7 2.4E-05 36.0 4.0 50 51-102 16-67 (75)
34 2i1q_A DNA repair and recombin 85.8 0.93 3.2E-05 45.1 5.8 53 49-102 3-57 (322)
35 1coo_A RNA polymerase alpha su 85.0 0.47 1.6E-05 40.6 2.6 51 49-101 24-76 (98)
36 1ci4_A Protein (barrier-TO-aut 84.7 0.69 2.4E-05 38.9 3.5 33 46-79 15-47 (89)
37 3im1_A Protein SNU246, PRE-mRN 84.0 1.2 4.1E-05 45.0 5.7 60 49-109 157-218 (328)
38 2p6r_A Afuhel308 helicase; pro 83.2 0.5 1.7E-05 52.3 2.7 55 49-106 632-686 (702)
39 2q0z_X Protein Pro2281; SEC63, 82.5 1.8 6.2E-05 44.0 6.3 60 49-109 161-222 (339)
40 1ixr_A Holliday junction DNA h 81.4 0.68 2.3E-05 43.9 2.5 55 50-104 73-130 (191)
41 2zj8_A DNA helicase, putative 80.6 1.3 4.4E-05 49.1 4.8 54 49-103 646-701 (720)
42 2fmp_A DNA polymerase beta; nu 78.8 0.78 2.7E-05 47.0 2.1 29 51-80 100-128 (335)
43 2bgw_A XPF endonuclease; hydro 77.0 1.9 6.6E-05 40.9 4.2 50 51-102 164-215 (219)
44 1gm5_A RECG; helicase, replica 75.5 1.2 3.9E-05 50.7 2.5 31 49-80 115-145 (780)
45 2duy_A Competence protein come 75.2 1.1 3.6E-05 35.6 1.6 30 51-80 29-58 (75)
46 1cuk_A RUVA protein; DNA repai 74.9 1.6 5.5E-05 41.7 3.0 55 50-104 74-131 (203)
47 3lda_A DNA repair protein RAD5 74.3 3.5 0.00012 43.1 5.6 57 45-102 77-137 (400)
48 1dgs_A DNA ligase; AMP complex 73.3 2.4 8.3E-05 47.4 4.3 54 47-100 439-494 (667)
49 2bcq_A DNA polymerase lambda; 73.2 1.9 6.6E-05 44.1 3.3 28 52-80 99-126 (335)
50 2z43_A DNA repair and recombin 71.6 0.8 2.8E-05 45.9 0.0 42 49-91 12-53 (324)
51 2ihm_A POL MU, DNA polymerase 70.6 2.4 8.1E-05 43.8 3.3 29 50-79 103-131 (360)
52 1jms_A Terminal deoxynucleotid 70.0 2.5 8.5E-05 44.1 3.3 29 50-79 122-150 (381)
53 3c65_A Uvrabc system protein C 69.5 0.95 3.3E-05 44.1 0.0 52 48-101 172-224 (226)
54 2owo_A DNA ligase; protein-DNA 68.4 4.3 0.00015 45.5 4.9 56 45-100 442-499 (671)
55 3ai4_A Yeast enhanced green fl 66.6 1.6 5.6E-05 43.6 1.0 24 480-503 249-273 (283)
56 2w9m_A Polymerase X; SAXS, DNA 63.9 2.5 8.6E-05 46.2 1.9 29 51-80 99-127 (578)
57 1u9l_A Transcription elongatio 61.1 9 0.00031 30.5 4.2 48 54-102 11-60 (70)
58 2ztd_A Holliday junction ATP-d 58.0 7.4 0.00025 37.4 3.8 53 53-105 92-147 (212)
59 4f92_B U5 small nuclear ribonu 53.5 7.6 0.00026 47.9 3.8 60 49-109 1557-1618(1724)
60 4gfj_A Topoisomerase V; helix- 52.3 11 0.00039 40.0 4.3 49 51-104 470-518 (685)
61 4glx_A DNA ligase; inhibitor, 50.0 13 0.00045 40.9 4.6 52 49-101 446-500 (586)
62 1v5w_A DMC1, meiotic recombina 47.7 3.9 0.00013 41.3 0.0 43 48-91 23-68 (343)
63 1wwu_A Hypothetical protein FL 46.8 22 0.00075 30.4 4.5 53 39-102 26-78 (99)
64 3b0x_A DNA polymerase beta fam 46.3 7.2 0.00024 42.5 1.8 17 485-504 555-571 (575)
65 3b0x_A DNA polymerase beta fam 44.8 11 0.00039 40.9 3.1 30 51-80 95-124 (575)
66 2bcq_A DNA polymerase lambda; 42.1 11 0.00036 38.6 2.2 52 51-107 59-120 (335)
67 3arc_U Photosystem II 12 kDa e 42.0 13 0.00044 31.4 2.4 30 51-80 28-57 (97)
68 2e8m_A Epidermal growth factor 41.0 28 0.00095 29.7 4.2 52 39-102 36-87 (99)
69 2edu_A Kinesin-like protein KI 40.1 15 0.0005 30.5 2.4 30 51-80 42-75 (98)
70 3vdp_A Recombination protein R 37.9 18 0.00062 34.8 3.0 16 51-66 28-43 (212)
71 3iz6_M 40S ribosomal protein S 36.9 14 0.00046 33.9 1.8 38 51-88 30-70 (152)
72 3sei_A Caskin-1; SAM domain, p 36.5 25 0.00087 31.5 3.6 68 16-92 56-123 (149)
73 1s5l_U Photosystem II 12 kDa e 36.1 20 0.00068 32.2 2.7 41 35-81 55-95 (134)
74 2ihm_A POL MU, DNA polymerase 35.6 26 0.00088 36.0 3.9 54 51-107 63-126 (360)
75 2owo_A DNA ligase; protein-DNA 34.8 30 0.001 38.7 4.5 16 51-66 482-497 (671)
76 3r8n_M 30S ribosomal protein S 34.1 22 0.00077 30.9 2.7 36 51-86 18-56 (114)
77 2w9m_A Polymerase X; SAXS, DNA 32.7 16 0.00053 39.9 1.8 77 14-105 104-181 (578)
78 3u5c_S 40S ribosomal protein S 32.5 22 0.00076 32.3 2.5 41 49-89 30-73 (146)
79 1jms_A Terminal deoxynucleotid 31.6 33 0.0011 35.6 3.9 55 51-107 82-145 (381)
80 1vdd_A Recombination protein R 31.3 25 0.00087 34.2 2.8 16 51-66 14-29 (228)
81 2fmp_A DNA polymerase beta; nu 30.0 29 0.00098 35.3 3.1 55 51-107 59-122 (335)
82 2xzm_M RPS18E; ribosome, trans 28.7 26 0.00089 32.1 2.3 40 51-90 32-74 (155)
83 1dgs_A DNA ligase; AMP complex 27.8 49 0.0017 36.9 4.7 45 54-100 512-558 (667)
84 3ro2_B Peptide of nuclear mito 26.4 39 0.0013 22.0 2.1 20 340-359 5-25 (28)
85 4f92_B U5 small nuclear ribonu 25.7 54 0.0018 40.5 5.0 60 48-109 725-785 (1724)
86 3j20_O 30S ribosomal protein S 24.5 26 0.0009 31.8 1.5 40 51-90 25-67 (148)
87 2vqe_M 30S ribosomal protein S 24.0 25 0.00084 31.2 1.2 37 51-87 19-58 (126)
88 3idw_A Actin cytoskeleton-regu 24.0 20 0.00067 28.9 0.5 36 463-498 12-47 (72)
89 3h7h_A Transcription elongatio 23.9 38 0.0013 29.8 2.3 28 473-500 71-106 (120)
90 3sgi_A DNA ligase; HET: DNA AM 23.3 17 0.00059 40.2 0.0 9 57-65 505-513 (615)
91 3c1y_A DNA integrity scanning 22.9 45 0.0016 34.7 3.1 46 51-98 317-364 (377)
92 2a6h_A DNA-directed RNA polyme 22.8 18 0.00061 36.8 0.0 46 48-95 253-300 (315)
93 3lu0_A DNA-directed RNA polyme 21.0 20 0.0007 36.6 0.0 43 49-93 255-299 (329)
No 1
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.4e-42 Score=358.10 Aligned_cols=215 Identities=23% Similarity=0.309 Sum_probs=105.8
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|+++||||||||||+||+|||||++++||+|+++++++++.+||+++||++|||||++++++|. .+||+|++||++++
T Consensus 131 ~i~~~~gl~~siGIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~ 209 (356)
T 4dez_A 131 VVAAETGLSCSVGISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLA-AMGITTVADLAVTD 209 (356)
T ss_dssp HHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHH-HTTCCSHHHHHTSC
T ss_pred HHHHHhCCccccchhccHHHHHHHHHHhhhcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHH-HcCCCeecccccCC
Confidence 58899999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHcCCcCcccccc-CCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 009729 82 EDKLQESYGFNTGTWLWNIARGISGEEVQAR-LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160 (527)
Q Consensus 82 ~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~-~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~ 160 (527)
...|+++||...|.+||++|+|+|+++|.+. ..+|||++++||+ .++.+.++++.+|..|++++++||++ +++
T Consensus 210 ~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~ksi~~~~tf~--~~~~~~~~l~~~l~~la~~~~~rLr~----~~~ 283 (356)
T 4dez_A 210 PSVLTTAFGPSTGLWLLLLAKGGGDTEVSSEPWVPRSRSHVVTFP--QDLTERREMDSAVRDLALQTLAEIVE----QGR 283 (356)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCCCCCC--------------------------------------------------
T ss_pred HHHHHHHhCChHHHHHHHHHcCCCcccccccccccccccccccCC--CcCCCHHHHHHHHHHHHHHHHHHHHH----cCC
Confidence 9999999997689999999999999999875 5689999999999 78999999999999999999999997 799
Q ss_pred eeeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEEEEecCC
Q 009729 161 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240 (527)
Q Consensus 161 ~a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~L 240 (527)
.+++|+|+||+.+ |.+ .+++.+|+.||+ ++..|+++|.++|.. .+.+.+||+|||++++|
T Consensus 284 ~~~~l~v~ir~~~---f~~----~t~~~~l~~pt~----d~~~i~~~a~~ll~~---------~~~~~~vRliGV~ls~l 343 (356)
T 4dez_A 284 IVTRVAVTVRTST---FYT----RTKIRKLPAPST----DAGQIVDTALAVLDQ---------FELDRPVRLLGVRLELA 343 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEEEEEEeCC---CeE----EEEEEECCcccC----CHHHHHHHHHHHHHh---------ccCCCCEEEEEEEECCC
Confidence 9999999999854 333 478889999984 778899999988874 34567899999999999
Q ss_pred ccc
Q 009729 241 VPV 243 (527)
Q Consensus 241 ~~~ 243 (527)
.++
T Consensus 344 ~d~ 346 (356)
T 4dez_A 344 MDD 346 (356)
T ss_dssp ---
T ss_pred CCC
Confidence 875
No 2
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=100.00 E-value=4.5e-41 Score=356.80 Aligned_cols=225 Identities=26% Similarity=0.364 Sum_probs=195.3
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCC-CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLP-IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LP-I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+|+++||||||||||+||+|||||++++||+|+++|.++++.+||++|| |++|||||++++++|. .+||+|+|||+.+
T Consensus 186 ~I~~~~Glt~svGIa~nk~LAKlAs~~~KP~g~~vl~~~~~~~~L~~Lppv~~l~GIG~~t~~~L~-~lGI~TigdLa~~ 264 (420)
T 3osn_A 186 AMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSLNHIKEIPGIGYKTAKCLE-ALGINSVRDLQTF 264 (420)
T ss_dssp HHHHHHCCCEEEEEESSHHHHHHHHTSSCSSCEEECCGGGHHHHHHHCSSGGGSTTCCHHHHHHHH-HTTCCSHHHHHHS
T ss_pred HHHHHHCCcEEEEEeCCHHHHHHhhhhcCCCCeEEecHHHHHHhhccCccHHHccCCCHHHHHHHH-HhCCCcHHHHhhC
Confidence 5788999999999999999999999999999999999999999999997 9999999999999995 9999999999999
Q ss_pred CHHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 009729 81 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160 (527)
Q Consensus 81 ~~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~ 160 (527)
++..|+++||+..|.+||++|+|+|+++|.+..++|||++++||+ ++.+.+++..+|..|+++|+.||++ +++
T Consensus 265 ~~~~L~~~fG~~~g~~L~~~a~G~d~~~V~~~~~~kSi~~e~tf~---~~~~~~~~~~~l~~La~~l~~rLr~----~~~ 337 (420)
T 3osn_A 265 SPKILEKELGISVAQRIQKLSFGEDNSPVILSGPPQSFSEEDSFK---KCSSEVEAKNKIEELLASLLNRVCQ----DGR 337 (420)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCSCSEEEEEEECS---SCCCSSSHHHHHHHHHHHHHHHHHH----HCS
T ss_pred CHHHHHHHhCchHHHHHHHHhcCCCccccCCCCCCCceeeeeeCC---CCCCHHHHHHHHHHHHHHHHHHHHH----cCC
Confidence 999999999976799999999999999999888899999999997 3788899999999999999999997 799
Q ss_pred eeeEEEEEEEec-cCCCCCCCCCcCcceeeCCCchhh-----hHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEE
Q 009729 161 IAHTLTLHASAF-KSSDSDSRKKFPSKSCPLRYGTAK-----IQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALS 234 (527)
Q Consensus 161 ~a~tLtL~iR~~-~~~df~~~~~~~SkS~~Lp~~T~~-----i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lG 234 (527)
.+++|+|+++++ ...+|. ..+++++++.++.. -++.+.+|+++|++||.+.++. ...++||+||
T Consensus 338 ~~~tv~l~ir~~~~~~~~~----~~sr~~~l~~~~~~~l~~~~t~~~~~i~~~a~~Lf~~~~~~------~~~~~iRllg 407 (420)
T 3osn_A 338 KPHTVRLIIRRYSSEKHYG----RESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNV------KMPFHLTLLS 407 (420)
T ss_dssp CEEEEEEEEEEECSSCCCC----CEEEEEECCTTTCCC-----CTTHHHHHHHHHHHHHHHSCS------SSCCEEEEEE
T ss_pred cccEEEEEEEeCCCCCCCc----eeEEEEECCCccccccccCCCchHHHHHHHHHHHHHHhhcc------cCCcceeEEE
Confidence 999999999964 221232 25899999886210 1246778999999999875421 1245699999
Q ss_pred EEecCCcccc
Q 009729 235 VSASKIVPVL 244 (527)
Q Consensus 235 Vsls~L~~~~ 244 (527)
|++++|++.+
T Consensus 408 v~~~~l~~~~ 417 (420)
T 3osn_A 408 VCFCNLKALN 417 (420)
T ss_dssp EEEEEEC---
T ss_pred EEEeCcccCc
Confidence 9999998864
No 3
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.4e-41 Score=364.79 Aligned_cols=224 Identities=22% Similarity=0.313 Sum_probs=202.2
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|+++||||||||||+||+|||||++++||+|+++|+++++.+||++|||++|||||++++++|. .+||+|+|||++++
T Consensus 268 ~I~~~tGlt~SvGIa~nk~LAKlAs~~~KP~G~~vl~~~~~~~~L~~LPV~~l~GIG~~t~~kL~-~lGI~TigDLa~~~ 346 (504)
T 3gqc_A 268 EIKDQTKCAASVGIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLA-SLGIKTCGDLQYMT 346 (504)
T ss_dssp HHHHHHSCCEEEEEESSHHHHHHHHHHHCSSCEEECCGGGHHHHHHHSBGGGSTTCCHHHHHHHH-HTTCCBHHHHTTSC
T ss_pred HHHHHhCCcEEEEEeCCHHHHHHHHhhCccCCEEEECHHHHHHHHhcCChhHhhCcCHHHHHHHH-HcCCCcHHHHHhcc
Confidence 57889999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 009729 82 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161 (527)
Q Consensus 82 ~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~~ 161 (527)
...|+++||+..|.+||+.|+|+|+++|.+..++|||+.++||+ .++.+.+++..+|..||++|+.||++ +++.
T Consensus 347 ~~~L~~~fG~~~g~~L~~~a~GiD~~pV~~~~~~KSi~~e~tf~--~d~~~~~~l~~~L~~La~~l~~rLr~----~~~~ 420 (504)
T 3gqc_A 347 MAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEKERKSVSAEINYG--IRFTQPKEAEAFLLSLSEEIQRRLEA----TGMK 420 (504)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCCCCCCCCCCCCCCEEEEECSS--CCCCSHHHHHHHHHHHHHHHHHHHHH----TTEE
T ss_pred HHHHHHhhChhHHHHHHHHhcCCCccccccccCCcceeeeeccC--CCCCCHHHHHHHHHHHHHHHHHHHHH----cCCc
Confidence 99999999976799999999999999999888899999999999 78999999999999999999999997 8999
Q ss_pred eeEEEEEEEecc------CCCCCCCC--CcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEE
Q 009729 162 AHTLTLHASAFK------SSDSDSRK--KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITAL 233 (527)
Q Consensus 162 a~tLtL~iR~~~------~~df~~~~--~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~l 233 (527)
+++|+|+|++.. +.+|..++ +..+++++|+.||+ ++..|+++|.++|... ...+.+||+|
T Consensus 421 ~~~vtLkl~~r~~d~~~~t~~f~~~g~~~~~trs~tL~~pT~----d~~~I~~~A~~Ll~~~--------~~~~~~vRll 488 (504)
T 3gqc_A 421 GKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATD----NAKIIGKAMLNMFHTM--------KLNISDMRGV 488 (504)
T ss_dssp EEEEEEEEEEECTTSCSBCSSTTCCCSEEEEEEEEEEEEEEC----CHHHHHHHHHHHHHTS--------CCCGGGEEEE
T ss_pred eeEEEEEEEEecccccccccccccCCCcccceeEeecCCCcC----CHHHHHHHHHHHHHHh--------cCCCCCeEEE
Confidence 999999998742 12343322 23588999999994 7888999999999853 2246799999
Q ss_pred EEEecCCcccc
Q 009729 234 SVSASKIVPVL 244 (527)
Q Consensus 234 GVsls~L~~~~ 244 (527)
||++++|++..
T Consensus 489 GV~~s~L~~~~ 499 (504)
T 3gqc_A 489 GIHVNQLVPTN 499 (504)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEcCcccCC
Confidence 99999999864
No 4
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=100.00 E-value=7e-41 Score=346.57 Aligned_cols=220 Identities=23% Similarity=0.339 Sum_probs=191.7
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|++++|||||||||+||+|||||++++||+|+++|+++++.+||+++||++|||||++++++|. .+||+|+|||++++
T Consensus 131 ~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~ 209 (352)
T 1jx4_A 131 KILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLK-KLGINKLVDTLSIE 209 (352)
T ss_dssp HHHHHHCCCEEEEEESSHHHHHHHHHHHCSSCEEECCHHHHHHHHHHSBGGGSTTCCHHHHHHHH-TTTCCBGGGGGSSC
T ss_pred HHHHHHCCcEEEEEcCCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCCCcccccCHHHHHHHH-HcCCchHHHHHCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 009729 82 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161 (527)
Q Consensus 82 ~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~~ 161 (527)
...|+++||+..|.++|++|+|+|+++|.+.. +|||++++||+ .++.+.+++..+|..|+++|+.||++ + .
T Consensus 210 ~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~~----~--~ 280 (352)
T 1jx4_A 210 FDKLKGMIGEAKAKYLISLARDEYNEPIRTRV-RKSIGRIVTMK--RNSRNLEEIKPYLFRAIEESYYKLDK----R--I 280 (352)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCC-CCEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHTT----C--C
T ss_pred HHHHHHhcChhHHHHHHHHhCCCCCCCccCCC-CceEEeeeecC--CCCCCHHHHHHHHHHHHHHHHHHHHH----h--c
Confidence 99999999983399999999999999998878 99999999999 78999999999999999999999986 3 8
Q ss_pred eeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCcc-CCcceeEEEEEecCC
Q 009729 162 AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHY-SGWRITALSVSASKI 240 (527)
Q Consensus 162 a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~-~~~~IR~lGVsls~L 240 (527)
+++|+|++++.+ |.. .+++++++.||+ ++..|++ +.++|...+ . .+.+||+|||++++|
T Consensus 281 ~~~v~l~l~~~~---~~~----~~~~~~l~~pt~----~~~~l~~-a~~ll~~~~--------~~~~~~vr~lgv~~~~l 340 (352)
T 1jx4_A 281 PKAIHVVAVTED---LDI----VSRGRTFPHGIS----KETAYSE-SVKLLQKIL--------EEDERKIRRIGVRFSKF 340 (352)
T ss_dssp EEEEEEEEEETT---SCE----EEEEEECSSCCC----HHHHHHH-HHHHHHHHH--------HHCCSCEEEEEEEEEEE
T ss_pred CCEEEEEEEECC---CCc----ceeEEecCCCCC----CHHHHHH-HHHHHHHHH--------hcCCCCEEEEEEEEeCC
Confidence 999999999854 333 478999999884 6777888 888887531 1 378999999999999
Q ss_pred ccccCCccccccccC
Q 009729 241 VPVLSGTCSIMKYFN 255 (527)
Q Consensus 241 ~~~~~g~~sq~~lF~ 255 (527)
.+. ..|.+||+
T Consensus 341 ~~~----~~q~~LF~ 351 (352)
T 1jx4_A 341 IEA----IGLDKFFD 351 (352)
T ss_dssp C--------------
T ss_pred CCc----cccccccc
Confidence 875 34778885
No 5
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.1e-40 Score=347.41 Aligned_cols=223 Identities=22% Similarity=0.320 Sum_probs=191.5
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|+++||||||||||+||+|||||++++||+|+++|+++++.+||+++||++|||||++++++|. .+||+|++||++++
T Consensus 132 ~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~GI~Ti~dL~~~~ 210 (362)
T 4f4y_A 132 EILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKN 210 (362)
T ss_dssp HHHHHHCCCCEEEEESSHHHHHHHHHTSCSSCEEECCTTTHHHHHHTCBSTTSTTCCSTTHHHHH-HTTCCBGGGGTTSC
T ss_pred HHHHHHCCcEEEEEeCCHHHHHHHHhcccCCCEEEECHHHHHHHHHhCChhhccCCCHHHHHHHH-HcCCChHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 009729 82 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161 (527)
Q Consensus 82 ~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~~ 161 (527)
...|+++||...|.+||++|+|+|+++|.+..+ |||+.++||+ .++.+.+++..+|..|+++|+.||+ . .
T Consensus 211 ~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~-ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rLr-----~--~ 280 (362)
T 4f4y_A 211 YNELEKITGKAKALYLLKLAQDEYNEPIRTRVR-KSIGRYLTLP--YNTRDVKVILPYLKKAINEAYNKVN-----G--I 280 (362)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCCCCCCCCC-CEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHCS-----S--E
T ss_pred HHHHHHHhChHHHHHHHHHhcCCCCCcCccCCC-cceEEEEecC--CCCCCHHHHHHHHHHHHHHHHHHHH-----h--C
Confidence 999999999448999999999999999988777 9999999999 7899999999999999999999997 3 8
Q ss_pred eeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcc-eeEEEEEecCC
Q 009729 162 AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWR-ITALSVSASKI 240 (527)
Q Consensus 162 a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~-IR~lGVsls~L 240 (527)
+++|+|++++.++ .. .+++.+++.| + ++..|++++.++|...+. ..+.+ ||++||++++|
T Consensus 281 ~~~v~l~i~~~~~---~~----~t~s~~l~~p-~----d~~~i~~~a~~ll~~~~~-------~~~~~~vr~lGV~~~~L 341 (362)
T 4f4y_A 281 PMRITVIAIMEDL---DI----LSKGKKFKHG-I----SIDNAYKVAEDLLRELLV-------RDKRRNVRRIGVKLDNI 341 (362)
T ss_dssp EEEEEEEEEETTS---CE----EEEEEECSSC-C----CHHHHHHHHHHHHHHHTT-------SSCSCCEEEEEEEEEEE
T ss_pred CCEEEEEEEECCC---cE----EEEEEECCCC-C----CHHHHHHHHHHHHHHHHh-------hcCCccEEEEEEEEecc
Confidence 9999999998643 33 4788889887 5 567789999988876420 04677 99999999999
Q ss_pred ccccCCccccccccCCC
Q 009729 241 VPVLSGTCSIMKYFNGP 257 (527)
Q Consensus 241 ~~~~~g~~sq~~lF~~~ 257 (527)
.+.. ..|.++|+-.
T Consensus 342 ~~~~---~~q~~~~~~~ 355 (362)
T 4f4y_A 342 IINK---TNLSDFFDIG 355 (362)
T ss_dssp EC---------------
T ss_pred ccCC---cccccccccC
Confidence 8863 5678888753
No 6
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=100.00 E-value=1.6e-40 Score=344.09 Aligned_cols=220 Identities=21% Similarity=0.310 Sum_probs=191.7
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|++++|||||||||+||+|||||++++||+|+++|+++++.+||+++||++|||||++++++|. .+||+|+|||++++
T Consensus 132 ~i~~~~Gl~~svGia~nk~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~-~~Gi~t~~dL~~~~ 210 (354)
T 3bq0_A 132 EILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKN 210 (354)
T ss_dssp HHHHHHCCCEEEEEESSHHHHHHHHHTTCSSCEEECCGGGHHHHHHHCBSTTSTTCCHHHHHHHT-TTTCCBGGGGGGSC
T ss_pred HHHHHHCCcEEeeeccCHHHHHHHhccCCCCCEEEECHHHHHHHHHhCCcccccCcCHHHHHHHH-HcCCccHHHHhcCC
Confidence 47789999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCce
Q 009729 82 EDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRI 161 (527)
Q Consensus 82 ~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~~ 161 (527)
...|+++||+..|.++|++|+|+|+++|.+.. +|||++++||+ .++.+.+++..+|..|+++|+.||+ . .
T Consensus 211 ~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~-~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~rL~-----~--~ 280 (354)
T 3bq0_A 211 YNELEKITGKAKALYLLKLAQNKYSEPVENKS-KIPHGRYLTLP--YNTRDVKVILPYLKKAINEAYNKVN-----G--I 280 (354)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTCCCCCCCSEE-CCCEEEEEEEE--EEECCHHHHHHHHHHHHHHHHTTTS-----S--E
T ss_pred HHHHHHHHCHHHHHHHHHHhCCCCCCCCcCCC-CceeEEeEeCC--CCCCCHHHHHHHHHHHHHHHHHHHH-----h--h
Confidence 99999999983399999999999999998877 99999999999 7899999999999999999999997 3 8
Q ss_pred eeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCc-c-eeEEEEEecC
Q 009729 162 AHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGW-R-ITALSVSASK 239 (527)
Q Consensus 162 a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~-~-IR~lGVsls~ 239 (527)
+++|+|++++.+ |.. .+++++++.||+ ++..|++ +..+|...+ ..+. + ||+|||++++
T Consensus 281 ~~~v~l~~~~~~---~~~----~~~~~~l~~pt~----~~~~i~~-~~~ll~~~~--------~~~~~~~vr~lgv~~~~ 340 (354)
T 3bq0_A 281 PMRITVIAIMED---LDI----LSKGKKFKHGIS----IDNAYKV-AEDLLRELL--------VRDKRRNVRRIGVKLDN 340 (354)
T ss_dssp EEEEEEEEEETT---SCE----EEEEEECSSCCC----HHHHHHH-HHHHHHHHT--------TSCSSCCEEEEEEEEEE
T ss_pred CCEEEEEEEeCC---CCc----ceEEEECCCccC----CHHHHHH-HHHHHHHHh--------ccCCCCceEEEEEEEec
Confidence 999999999854 332 478999999884 6778889 888887532 1344 8 9999999999
Q ss_pred CccccCCccccccccC
Q 009729 240 IVPVLSGTCSIMKYFN 255 (527)
Q Consensus 240 L~~~~~g~~sq~~lF~ 255 (527)
|.+.. ..|.+||+
T Consensus 341 l~~~~---~~q~~LF~ 353 (354)
T 3bq0_A 341 IIINK---TNLSDFFD 353 (354)
T ss_dssp EECC------------
T ss_pred CCCCC---cccccccc
Confidence 98863 46788885
No 7
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=100.00 E-value=1.2e-39 Score=347.14 Aligned_cols=228 Identities=39% Similarity=0.640 Sum_probs=195.1
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHH-HHHhcCCCcHHHHhhc
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTS-LQNELGVTTVGDLLKF 80 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~k-L~~~lGI~TigDLa~~ 80 (527)
+|++++|||||||||+||+|||||++++||+|+++|+++++.+||+++||++|||||++++++ | +.+||+|+|||+++
T Consensus 206 ~I~~~~Gl~~svGIa~nk~lAKlAs~~~Kp~g~~vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL-~~lGI~TigdLa~~ 284 (435)
T 4ecq_A 206 AIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVI-EILGIEYMGELTQF 284 (435)
T ss_dssp HHHHHHSCCEEEEEESSHHHHHHHHHHSCSSCEEECCGGGHHHHHHTCBGGGSTTCSSHHHHHHH-HHHTCCBGGGGGGS
T ss_pred HHHHHhCCcEEEEecCCHHHHHHHhccCCCCceEEEehhHHHHHHhhCCHHHhcCCCHHHHHHHH-HHcCCCcHHHHhhC
Confidence 478899999999999999999999999999999999999999999999999999999999877 6 59999999999999
Q ss_pred CHHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCc
Q 009729 81 SEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKR 160 (527)
Q Consensus 81 ~~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~ 160 (527)
+...|+++||.+.|.+||+.|+|+|+++|.+..++|||++++||+.+.++.+.+++..+|..|+++|+.||+++..++++
T Consensus 285 ~~~~L~~~fG~~~g~~L~~~a~G~d~~~v~~~~~~ksi~~~~tf~~~~~i~~~~~l~~~l~~la~~l~~rLr~~~~~~~~ 364 (435)
T 4ecq_A 285 TESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDR 364 (435)
T ss_dssp CHHHHHHHHCHHHHHHHHHHTTTCCCCCCCCBCSCSCEEEEEECCGGGCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred CHHHHHHHhCccHHHHHHHHhhCCCCcccCCCCCCCeeeeeEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCc
Confidence 99999999995589999999999999999988889999999999931148899999999999999999999984333489
Q ss_pred eeeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEEEEecCC
Q 009729 161 IAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKI 240 (527)
Q Consensus 161 ~a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~L 240 (527)
.|++|+|++++.++.++. ..+|+++|+.+ ++..|++.|+.||...+....+ ..| ..+||.|||++++|
T Consensus 365 ~~~~l~v~ir~~~~~~~~----~~~R~~~l~~~------~~~~i~~~a~~L~~~~~~~~~~-~~~-~~pir~lgvs~s~f 432 (435)
T 4ecq_A 365 VATQLVVSIRVQGDKRLS----SLRRCCALTRY------DAHKMSHDAFTVIKNCNTSGIQ-TEW-SPPLTMLFLCATKF 432 (435)
T ss_dssp EEEEEEEEEEETTCCSSC----SEEEEEECCSC------CHHHHHHHHHHHHGGGCCCSST-TEE-EEEEEEEEEEEEEE
T ss_pred eEEEEEEEEEeCCCCCCc----eeEEeccCCCC------CHHHHHHHHHHHHHHHhhcccc-ccC-CCCeeEEEEEEeec
Confidence 999999999996532232 25899999864 3557888888888864321000 011 35799999999999
Q ss_pred cc
Q 009729 241 VP 242 (527)
Q Consensus 241 ~~ 242 (527)
++
T Consensus 433 ~~ 434 (435)
T 4ecq_A 433 SA 434 (435)
T ss_dssp EE
T ss_pred cc
Confidence 86
No 8
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=351.46 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=193.8
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccC--CHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFS--SVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e--~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~ 79 (527)
+|+++||||||||||+||+|||||++++||||+++|.++ ++.+||++|||++|||||++++++|. .+||+|||||++
T Consensus 289 ~I~~~tGlt~S~GIA~Nk~LAKlAs~~~KP~G~~vl~~~~~~v~~fL~~LPV~kl~GIG~~t~~~L~-~lGI~TigDL~~ 367 (517)
T 3pzp_A 289 RIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKMLK-ALGIITCTELYQ 367 (517)
T ss_dssp HHHHHHSCCEEEEEESSHHHHHHHHHTTCSSCEEECCSSHHHHHHHHTTCBGGGSTTCCHHHHHHHH-HTTCCBHHHHHH
T ss_pred HHHHHhCCeEEEEEcCCHHHHHHHhCcCCCCCEEEecCChHHHHHHHhcCChhhhccccHHHHHHHH-HhCCCcHHHHHh
Confidence 578899999999999999999999999999999999875 68999999999999999999999995 999999999999
Q ss_pred cCHHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcC
Q 009729 80 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 159 (527)
Q Consensus 80 ~~~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~ 159 (527)
.+ ..|.++||+..+.+||+.|+|+|+++|.+..++|||+.++||+ . +.+.+++..+|..||++|+.||++ ++
T Consensus 368 ~~-~~L~~~fG~~~~~~l~~~a~Gid~~~v~~~~~~KSi~~e~tf~--~-~~~~e~l~~~l~~La~~l~~rLr~----~~ 439 (517)
T 3pzp_A 368 QR-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQELCSELAQDLQK----ER 439 (517)
T ss_dssp HH-HHHHHHSCHHHHHHHHHHHTTCCCCSCCCCCCCCCEEEEEEEE--E-ECCHHHHHHHHHHHHHHHHHHHHT----TT
T ss_pred hH-HHHHHHhChHHHHHHHHHHcCCCcccccCCCCCccceeEEEcc--c-ccCHHHHHHHHHHHHHHHHHHHHH----cC
Confidence 84 7899999986688899999999999999888999999999998 4 789999999999999999999997 89
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEEEEecC
Q 009729 160 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASK 239 (527)
Q Consensus 160 ~~a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~ 239 (527)
+.+++|+|++++.+ |.. .+++++++.+|+ ++.+|++.|.++|...++. ....+.+||+|||++++
T Consensus 440 ~~~~~vtlklk~~~---f~~----~tr~~tl~~~t~----~~~~i~~~a~~Ll~~~~~~----~~~~~~~iRllGV~~s~ 504 (517)
T 3pzp_A 440 LKGRTVTIKLKNVN---FEV----KTRASTVSSVVS----TAEEIFAIAKELLKTEIDA----DFPHPLRLRLMGVRISS 504 (517)
T ss_dssp CCBSCEEEEEEETT---SCE----EEECCCCSSCBC----SHHHHHHHHHHHHHHHHHH----HTTSCCCEEEEEEEECC
T ss_pred CceeEEEEEEEecC---Cce----eeEEEeCCCCCC----CHHHHHHHHHHHHHHHhhh----ccCCCCcEEEEEEEecC
Confidence 99999999999854 333 478999999984 7788999999988754210 00134579999999999
Q ss_pred Ccccc
Q 009729 240 IVPVL 244 (527)
Q Consensus 240 L~~~~ 244 (527)
|++..
T Consensus 505 l~~~~ 509 (517)
T 3pzp_A 505 FPNEE 509 (517)
T ss_dssp CCCCC
T ss_pred CcChh
Confidence 99865
No 9
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=100.00 E-value=4.6e-39 Score=349.54 Aligned_cols=228 Identities=24% Similarity=0.341 Sum_probs=195.0
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhccc--CCCCcccCCcHHHHHHHHHhc-CC---CcH-
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDS--LPIKKMKQLGGKLGTSLQNEL-GV---TTV- 74 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~--LPI~kLpGIG~k~~~kL~~~l-GI---~Ti- 74 (527)
+|+++||||||||||+||+||||||+++||+|+++|+++++.+||++ +||++|||||++++++|. .+ || +|+
T Consensus 258 ~I~~~tGlt~SvGIa~nK~LAKlAs~~~KP~G~~vi~~~~~~~fL~~~~lPV~~l~GIG~~t~~~L~-~llGI~~~~ti~ 336 (520)
T 3mfi_A 258 SIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELI-DVLDLPHENSIK 336 (520)
T ss_dssp HHHHHHCCCEEEEEESSHHHHHHHHTTSCSSEEEECCGGGHHHHHTSSSCCGGGSTTCSSHHHHHHH-HHTTCCSSSHHH
T ss_pred HHHHHhCCcEEEEEeCCHHHHHHHhcccCCCCeEEcChHHHHHHhhccCCcHHHhcCCCHHHHHHHH-HhcCCCcccchh
Confidence 58899999999999999999999999999999999999999999998 999999999999999996 77 99 665
Q ss_pred ----------HHHhhcCHHHHHHHhcc------------chHHHHHHHHcCCcCccccccCCCccccccccCCCCCC-CC
Q 009729 75 ----------GDLLKFSEDKLQESYGF------------NTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRA-LK 131 (527)
Q Consensus 75 ----------gDLa~~~~~~L~~~FG~------------~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~d-i~ 131 (527)
+||+.++...|+++||. ..|.+||++|||+|+++|.+..++|||++++||+ .+ +.
T Consensus 337 ~i~~l~~~t~~dL~~~~~~~L~~~fG~~~~~~~d~~~~g~~g~~L~~~arGid~~~V~~~~~~KSi~~~~tf~--~~~i~ 414 (520)
T 3mfi_A 337 HIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRPVVKSMMSNKNLR--GKSCN 414 (520)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHSTTCC---CCCCTTCHHHHHHHHHHHTTTCCCCCCCCCCSCSCEEEEEECC--TTTTC
T ss_pred hhhhccCCCHHHHHhcCHHHHHHhcCccccccccchhhhHHHHHHHHHhCCCCCCCCCCCCCCCceeeEEEcC--CCCcC
Confidence 88888888999999994 4899999999999999999888999999999999 54 89
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhH--HhcCceeeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHH
Q 009729 132 TVASVQHWLNQLCEELSERLCSDL--EQNKRIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGL 209 (527)
Q Consensus 132 ~~eel~~~L~~LaeeLa~RLr~dl--~~~~~~a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal 209 (527)
+.+++..+|..||++|+.||++.- ...++.|++|+|++++.+ |.+ .+++.+|+.||.. +++..|+++|.
T Consensus 415 ~~~~l~~~L~~la~~l~~rLr~~~~~~~~~~~~rtvtl~ir~~d---f~~----~trs~~l~~pt~~--~~~~~I~~~a~ 485 (520)
T 3mfi_A 415 SIVDCISWLEVFCAELTSRIQDLEQEYNKIVIPRTVSISLKTKS---YEV----YRKSGPVAYKGIN--FQSHELLKVGI 485 (520)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEEEECTT---CCE----EEEEEECCCCCGG--GHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccccccceeeeEEEEEEEeCC---CCc----ceEEEECCCCCcc--CCHHHHHHHHH
Confidence 999999999999999999999720 002589999999999854 443 4889999998821 26778899998
Q ss_pred HHHhcccCccccCCccCCcceeEEEEEecCCcccc
Q 009729 210 REFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 244 (527)
Q Consensus 210 ~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~L~~~~ 244 (527)
+||...+.. .+...+.+||+|||++++|+...
T Consensus 486 ~Ll~~~~~~---~~~~~~~~iRliGV~~s~Le~~~ 517 (520)
T 3mfi_A 486 KFVTDLDIK---GKNKSYYPLTKLSMTITNFDIID 517 (520)
T ss_dssp HHHHHHHHH---TTTSSCSSCSEEEEEEEEEEEEE
T ss_pred HHHHHHhhh---cccccCCceeEEEEEEeCCEecC
Confidence 888764210 00012589999999999998764
No 10
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=100.00 E-value=8.7e-39 Score=340.23 Aligned_cols=222 Identities=20% Similarity=0.187 Sum_probs=193.7
Q ss_pred ccchhc-CceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCH-HhhcccCCCCcccCCcHHHHHHHHHh--cCCCcHHHH
Q 009729 2 QVLKET-EFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSV-KGLLDSLPIKKMKQLGGKLGTSLQNE--LGVTTVGDL 77 (527)
Q Consensus 2 ~I~~et-GLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v-~~fL~~LPI~kLpGIG~k~~~kL~~~--lGI~TigDL 77 (527)
+|+++| |||||||||+||+|||||++++||+|+++|+++++ .+||+++||++|||||++++++|. . +||+|++||
T Consensus 192 ~I~~~~gGlt~svGIa~nk~lAKlAs~~aKp~G~~~l~~~~~~~~~l~~lpv~~l~GiG~~~~~~L~-~~~~GI~ti~dL 270 (434)
T 2aq4_A 192 EIFQGTNGCTVSIGCSDSLVLARLALKMAKPNGYNITFKSNLSEEFWSSFKLDDLPGVGHSTLSRLE-STFDSPHSLNDL 270 (434)
T ss_dssp HHHHHHSSCCEEEEEESSHHHHHHHHHHHCSSCEECCCGGGCCHHHHTTCCGGGSTTCCHHHHHHHH-HHTTCCCSHHHH
T ss_pred HHHHHcCCCcEEEEecCCHHHHHHHHhcCCCCCEEEECChhhHHHHhhcCCcccccCcCHHHHHHHH-HhcCCceEHHHH
Confidence 578889 89999999999999999999999999999998887 799999999999999999999995 8 899999999
Q ss_pred hhc-CHHHHHHHhccchHHHHHHHHcCCcCcccc-----cc--CCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 009729 78 LKF-SEDKLQESYGFNTGTWLWNIARGISGEEVQ-----AR--LLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSE 149 (527)
Q Consensus 78 a~~-~~~~L~~~FG~~~G~~L~~~arGiD~~~V~-----~~--~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~ 149 (527)
+++ +...|+++||...|.++|++|+|+|+++|. +. .++|||+.++||+ .++.+.+++..+|..|+++|+.
T Consensus 271 ~~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v~~~~~~~~~~~~~ksi~~~~tf~--~~~~~~~~l~~~l~~l~~~l~~ 348 (434)
T 2aq4_A 271 RKRYTLDALKASVGSKLGMKIHLALQGQDDEESLKILYDPKEVLQRKSLSIDINWG--IRFKNITQVDLFIERGCQYLLE 348 (434)
T ss_dssp HHHCCHHHHHHHHCSSHHHHHHHHTTTCCCHHHHHHHHCHHHHHSCCCEEEEECSS--CCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHhCHHHHHHHHHHhcCCCcccccccccCcccCCCCceeEEEEECC--CCCCCHHHHHHHHHHHHHHHHH
Confidence 999 999999999965899999999999999985 32 4789999999999 7899999999999999999999
Q ss_pred HHHHhHHhcCceeeEEEEEEEecc-CCC-----CCCCC--CcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCcccc
Q 009729 150 RLCSDLEQNKRIAHTLTLHASAFK-SSD-----SDSRK--KFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQ 221 (527)
Q Consensus 150 RLr~dl~~~~~~a~tLtL~iR~~~-~~d-----f~~~~--~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~ 221 (527)
||++ +++.+++|+|++++.. ... +.+++ ...+++++++.||+ ++..|++.+..+|...+
T Consensus 349 rLr~----~~~~~~~v~l~l~~r~~~~~~~~~ky~g~gd~~~~s~s~~l~~pt~----~~~~i~~~a~~ll~~~~----- 415 (434)
T 2aq4_A 349 KLNE----INKTTSQITLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTN----EFGIIATEMKSLYRTLG----- 415 (434)
T ss_dssp HHHH----TTEEEEEEEEEEEEECTTSCSSCSSTTCCCSEEEEEEEEEEEEEEC----CHHHHHHHHHHHHHHHT-----
T ss_pred HHHH----cCCcceEEEEEEEEecCCCCcccccccCCCCcccceEEeecCCCcC----CHHHHHHHHHHHHHHhc-----
Confidence 9997 8999999999998522 111 11111 23578899998884 67789999999887531
Q ss_pred CCccCCcceeEEEEEecCCcc
Q 009729 222 GSHYSGWRITALSVSASKIVP 242 (527)
Q Consensus 222 ~~~~~~~~IR~lGVsls~L~~ 242 (527)
..+.+||+|||++++|++
T Consensus 416 ---~~~~~vR~lgv~~s~l~~ 433 (434)
T 2aq4_A 416 ---CPPMELRGLALQFNKLVD 433 (434)
T ss_dssp ---CCGGGEEEEEEEEEEEEE
T ss_pred ---CCCCCEEEEEEEEeCccc
Confidence 246799999999999875
No 11
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=100.00 E-value=1.1e-39 Score=349.21 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=180.4
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEecc--CCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPF--SSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~--e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~ 79 (527)
+|+++||||||||||+||+|||||++++|||||++|++ +++.+||+++||++|||||++++++| +.+||+|+|||++
T Consensus 233 ~I~~~~Glt~S~GIa~nk~LAKlAs~~~KP~g~~vl~~~~~~v~~fL~~lpv~~l~GiG~~~~~~L-~~lGI~T~gdL~~ 311 (459)
T 1t94_A 233 RIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKML-KALGIITCTELYQ 311 (459)
T ss_dssp HHHHHHSCCEEEEEESSHHHHHHHHHHTTTTCEEECCSSHHHHHHHHTTCBGGGCTTSCHHHHHHH-HHTTCCBHHHHHH
T ss_pred HHHHHhCCeEEEeecccHHHHHHHhhccCCCCEEEecCcHHHHHHHHHcCCHHhcCCcCHHHHHHH-HHcCCCcHHHHHh
Confidence 57889999999999999999999999999999999987 47999999999999999999999999 5999999999999
Q ss_pred cCHHHHHHHhccchHHHHHHHHcCCcCccccccCCCccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcC
Q 009729 80 FSEDKLQESYGFNTGTWLWNIARGISGEEVQARLLPKSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNK 159 (527)
Q Consensus 80 ~~~~~L~~~FG~~~G~~L~~~arGiD~~~V~~~~~~KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~ 159 (527)
.+ ..|+++||...|.+||+.|+|+|+++|.+..++|||++++||+ . +.+.+++..+|..|+++|+.||++ ++
T Consensus 312 ~~-~~L~~~fG~~~~~~l~~~a~G~d~~~v~~~~~~kSi~~~~tf~--~-~~~~~~l~~~l~~L~~~l~~rL~~----~~ 383 (459)
T 1t94_A 312 QR-ALLSLLFSETSWHYFLHISLGLGSTHLTRDGERKSMSVERTFS--E-INKAEEQYSLCQELCSELAQDLQK----ER 383 (459)
T ss_dssp TH-HHHHHHSCHHHHHHHHHHHTTCCCSCC---C--CCEEEEEEEE--E-ECCHHHHHHHHHHHHSSTTCCCC-------
T ss_pred hH-HHHHHHhChHhHHHHHHHHcCCCCcccCCCCCCcceeeeeecC--C-CCCHHHHHHHHHHHHHHHHHHHHH----hC
Confidence 85 7899999986799999999999999999888899999999998 5 889999999999999999999987 79
Q ss_pred ceeeEEEEEEEeccCCCCCCCCCcCcceeeCCCchhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEEEEecC
Q 009729 160 RIAHTLTLHASAFKSSDSDSRKKFPSKSCPLRYGTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASK 239 (527)
Q Consensus 160 ~~a~tLtL~iR~~~~~df~~~~~~~SkS~~Lp~~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~ 239 (527)
+.+++|+|++++.+ |.. .+++++++.+|+ ++..|++.|.++|...+.. ....+.+||+|||++++
T Consensus 384 ~~~~~vtl~l~~~~---~~~----~srs~~l~~~t~----~~~~i~~~a~~ll~~~~~~----~~~~~~~ir~lGv~~~~ 448 (459)
T 1t94_A 384 LKGRTVTIKLKNVN---FEV----KTRASTVSSVVS----TAEEIFAIAKELLKTEIDA----DFPHPLRLRLMGVRISS 448 (459)
T ss_dssp CCCSCEEEEEEETT---CCE----EEECC-CCCCCC----C--CHHHHHHHHHHHHHSS----STTSCCCEEEEEEEECC
T ss_pred CCcceEEEEEEECC---Cce----eeEEEECCCccC----CHHHHHHHHHHHHHHHHhh----ccCCCCcEEEEEEEEcc
Confidence 99999999999854 333 478899998884 5667888888888754310 00135679999999999
Q ss_pred Ccccc
Q 009729 240 IVPVL 244 (527)
Q Consensus 240 L~~~~ 244 (527)
|.+..
T Consensus 449 l~~~~ 453 (459)
T 1t94_A 449 FPNEE 453 (459)
T ss_dssp -----
T ss_pred CcCcc
Confidence 98864
No 12
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=99.82 E-value=2.9e-21 Score=188.69 Aligned_cols=85 Identities=28% Similarity=0.520 Sum_probs=71.8
Q ss_pred ccchhcCceEEEEEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 2 QVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 2 ~I~~etGLt~SIGIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
+|++++|||||||||+||+|||||++++||+|+++|+++++.+||+++||++|||||++++++|. .+||+|+|||++++
T Consensus 137 ~i~~~~Gl~~svGia~nk~lAKlas~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~giG~~~~~~L~-~~Gi~TigdL~~~~ 215 (221)
T 1im4_A 137 EILEKEKITVTVGVAPNKILAKIIADKSKPNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLN-ELGIQKLRDILSKN 215 (221)
T ss_dssp HHHHHHCCCEEEEEESSHHHHHHHHHHTCSSCEEECCGGGHHHHHHTCBGGGSTTCCHHHHHHHH-HTTCCBTTC-----
T ss_pred HHHHHhCCeEEEEeCCCHHHHHHHHhhcCCCCEEEECHHHHHHHHHhCCcccccCCCHHHHHHHH-HcCCCcHHHHHCCC
Confidence 47788999999999999999999999999999999999999999999999999999999999995 99999999999999
Q ss_pred HHHHHH
Q 009729 82 EDKLQE 87 (527)
Q Consensus 82 ~~~L~~ 87 (527)
...|++
T Consensus 216 ~~~L~~ 221 (221)
T 1im4_A 216 YNELEK 221 (221)
T ss_dssp ------
T ss_pred HHHhhC
Confidence 887753
No 13
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=99.27 E-value=4.3e-12 Score=111.16 Aligned_cols=100 Identities=10% Similarity=0.177 Sum_probs=83.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhHHhcCceeeEEE---EEEEeccCCCCCCCCCcCcceeeCCC
Q 009729 116 KSHGSGKSFPGPRALKTVASVQHWLNQLCEELSERLCSDLEQNKRIAHTLT---LHASAFKSSDSDSRKKFPSKSCPLRY 192 (527)
Q Consensus 116 KSIs~erTF~~~~di~~~eel~~~L~~LaeeLa~RLr~dl~~~~~~a~tLt---L~iR~~~~~df~~~~~~~SkS~~Lp~ 192 (527)
.-+|.|+||+ .|+.+.+++..+|..||++|+.||++ .+ .|++|+ |+|+|++ |.+ .+++.+ .
T Consensus 5 ~~~g~e~Tf~--~d~~~~~~l~~~l~~l~~~v~~rLr~----~~-~~~tV~k~~vkir~~d---F~~----~trs~t--~ 68 (115)
T 1unn_C 5 HHVGVERTMA--EDIHHWSECEAIIERLYPELERRLAK----VK-PDLLIARQGVKLKFDD---FQQ----TTQEHV--W 68 (115)
T ss_dssp CEEEEEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHH----HC-TTCBCSEEEEEEEETT---SCE----EEEEEE--C
T ss_pred CCCccceECC--CCCCCHHHHHHHHHHHHHHHHHHHHh----hC-CCCeEEEeEEEEEECC---CCe----EEeccc--c
Confidence 3579999999 89999999999999999999999997 78 999999 9999964 443 366666 4
Q ss_pred chhhhHHhHHHHHHHHHHHHhcccCccccCCccCCcceeEEEEEecCCcccc
Q 009729 193 GTAKIQEDTFNLFQAGLREFLGSFGVKTQGSHYSGWRITALSVSASKIVPVL 244 (527)
Q Consensus 193 ~T~~i~~~a~~Lf~aal~Ll~~~~~~k~~~~~~~~~~IR~lGVsls~L~~~~ 244 (527)
||+ ++..|+++|.++|... |.+.+||+|||++++|.+..
T Consensus 69 pt~----~~~~i~~~a~~Ll~~~---------~~~~~vRllGV~ls~L~~~~ 107 (115)
T 1unn_C 69 PRL----NKADLIATARKTWDER---------RGGRGVRLVGLHVTLLDPQM 107 (115)
T ss_dssp SBC----CHHHHHHHHHHHHHHH---------CTTCCEEEEEEEEECCCCCC
T ss_pred CcC----CHHHHHHHHHHHHHhh---------hcCCCEEEEEEEEeCCCCCC
Confidence 663 6778999999988752 45789999999999998753
No 14
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.60 E-value=0.0033 Score=49.41 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=45.0
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccch-HHHHHHHHcC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 103 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~-G~~L~~~arG 103 (527)
+.+|||||++..++|.+.+ .++.+|..++.++|.+..|... |+.+|...+.
T Consensus 6 L~~IpGIG~kr~~~LL~~F--gs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp HHTSTTCCHHHHHHHHHHC--SSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHcCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 4579999999999997444 5999999999999999999988 9999998874
No 15
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=96.32 E-value=0.0024 Score=51.46 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=44.9
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhc--cchHHHHHHHHcC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLWNIARG 103 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG--~~~G~~L~~~arG 103 (527)
|.+|+|||..+..+|. ..||+|+.||+.++...|..+.| ...+..|...||.
T Consensus 9 l~~L~Gi~~~~~~kL~-e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLA-ARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHSSTTCCHHHHHHHH-TTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 5578899999999995 99999999999999999999888 3457778877773
No 16
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=95.73 E-value=0.0045 Score=45.80 Aligned_cols=21 Identities=43% Similarity=0.756 Sum_probs=18.8
Q ss_pred ccCCccccccCChHHHHHHHH
Q 009729 480 EEIDPSVIDELPKEIQDEIQA 500 (527)
Q Consensus 480 ~~id~~~~~el~~ei~~e~~~ 500 (527)
+.||+.|+.+||.+||.||-+
T Consensus 14 ~~VD~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 14 EGVDQEVFKQLPADIQEEILS 34 (48)
T ss_dssp TTCCGGGTTTSCHHHHHHHTT
T ss_pred CCCCHHHHHHCcHHHHHHHHh
Confidence 569999999999999999843
No 17
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.61 E-value=0.01 Score=49.39 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=45.5
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccch-HHHHHHHHcC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT-GTWLWNIARG 103 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~-G~~L~~~arG 103 (527)
+.+|||||++..++|. -.+.++.+|..++.+.|..++|... |+.+|..++.
T Consensus 20 L~~IpGIG~kr~~~LL--~~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLM--HHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHH--HHSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHH--HHcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 4578999999999996 5667999999999999999999988 9999999974
No 18
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.79 E-value=0.019 Score=48.70 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHH
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL 85 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L 85 (527)
.+++||+||+++++.|. ..||.|+.||....+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~-~vGI~s~e~L~~~Ga~~a 39 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKEA 39 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHH
Confidence 57899999999999995 999999999999876543
No 19
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.39 E-value=0.036 Score=47.07 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHH
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDK 84 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~ 84 (527)
.+++||+||+++++.|. ..||.|+.||..+....
T Consensus 5 ~L~dLPNig~~~e~~L~-~~GI~t~~~Lr~~Ga~~ 38 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLI-KAGIKTPVELKDVGSKE 38 (93)
T ss_dssp CGGGSTTCCHHHHHHHH-HTTCCSHHHHHHHCHHH
T ss_pred HHhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHH
Confidence 47899999999999995 99999999999987654
No 20
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=92.95 E-value=0.13 Score=42.65 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=42.7
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHHcC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 103 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~arG 103 (527)
+..+||||.+++++|.+.+| ++.+|...+.+.|.+. +|.+.+..++.....
T Consensus 34 L~~IpgIG~~~A~~Ll~~fg--s~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 34 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp HTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 56789999999999987776 7899999999999888 787778888777653
No 21
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=92.78 E-value=0.067 Score=43.09 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=40.8
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHH
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 101 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~a 101 (527)
..+..+||||++++++|.+.+| ++.+|...+.+.|.+. +|.+.+..++...
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~fg--sl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHcC--CHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 3467899999999999987766 7999999999999887 6766666666544
No 22
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=92.71 E-value=0.12 Score=42.48 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=42.7
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHHcC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 103 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~arG 103 (527)
+..+||||.+++++|.+.+| ++.+|...+.+.|... +|.+.+..++.....
T Consensus 21 L~~IpgIG~~~A~~Ll~~fg--sl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 21 LTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HTTSSSCCHHHHHHHHHHTC--BHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHcCCCCCHHHHHHHHHHCC--CHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 56789999999999986665 7999999999999888 777778888777754
No 23
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=92.54 E-value=0.16 Score=41.18 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=43.0
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHH
Q 009729 47 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 101 (527)
Q Consensus 47 ~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~a 101 (527)
...||.++ ++..+....|. ..||+|++||...+.+.|.+. ||.+.-..+...+
T Consensus 7 l~~~Ie~L-~LS~Ra~NcLk-ragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L 61 (73)
T 1z3e_B 7 LEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 61 (73)
T ss_dssp HTCBGGGS-CCBHHHHHHHH-HTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hcCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 34889999 89999999995 999999999999999998766 7776555554444
No 24
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=91.75 E-value=0.13 Score=42.30 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=43.3
Q ss_pred HhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHH
Q 009729 43 KGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWN 99 (527)
Q Consensus 43 ~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~ 99 (527)
..-+-..||.++ ++..+....|. ..||+|++||..++...|.+. ||.+.-..+..
T Consensus 10 ~~~~l~~~Ie~L-~LS~Ra~NcLk-~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 10 KEKVLEMTIEEL-DLSVRSYNCLK-RAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp CCCGGGCBGGGS-CCBHHHHHHHH-HTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred hHHHhcCcHHHh-CCCHHHHHHHH-HhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 344567899999 89999999995 999999999999999888655 66654444433
No 25
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=91.37 E-value=0.091 Score=46.11 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred cCCCCccc--CCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc--chHHHHHHHHcCC
Q 009729 48 SLPIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGI 104 (527)
Q Consensus 48 ~LPI~kLp--GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~--~~G~~L~~~arGi 104 (527)
++||.+|+ |||....++|. ..|++|+.+|+..++..|..+-|. ..+..+...|+-.
T Consensus 22 ~~~I~~L~~~GIg~~~i~kL~-eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 22 PQPISRLEQCGINANDVKKLE-EAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCCHHHHHHTTCSHHHHHHHH-TTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CccHHHHHhcCCCHHHHHHHH-HcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 46888888 99999999995 999999999999999999877664 3577777777744
No 26
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=90.80 E-value=0.045 Score=53.96 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHH
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 101 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~a 101 (527)
..+.+|+|||++++.+|. ..|+.++.+|+..+...|.+. ||.+.++.++..+
T Consensus 15 ~~L~~IpGIGpk~a~~Ll-~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLR-EAGFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp -------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 567889999999999997 559999999999999999888 7776677665444
No 27
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=90.11 E-value=0.11 Score=44.35 Aligned_cols=29 Identities=41% Similarity=0.793 Sum_probs=21.6
Q ss_pred cCCccccccCChHHHHHH-HHhhCCCCCCC
Q 009729 481 EIDPSVIDELPKEIQDEI-QAWLRPSKRPH 509 (527)
Q Consensus 481 ~id~~~~~el~~ei~~e~-~~~~~~~~~~~ 509 (527)
+|||.|+.|||+|+|+|+ ..|=|..--++
T Consensus 67 ~VDP~VFyeLP~eVQ~ELla~Wr~~~~~~~ 96 (108)
T 2khu_A 67 DIDPQVFYELPEAVQKELLAEWKRTGSDFH 96 (108)
T ss_dssp TCCHHHHTTSCHHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHccHHHHHHHHHHHHHhCCCCC
Confidence 899999999999999996 45866544333
No 28
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=90.00 E-value=0.29 Score=47.57 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=44.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc-chHHHHHHH
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNI 100 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~-~~G~~L~~~ 100 (527)
.++..|||||++++++|.+.+| ++..|..++.+.|.+.+|. +.++.++..
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg--Sl~~i~~As~EeL~~VIG~~~~A~~I~~~ 218 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG--SLENIRSASLEEIARVIGSTEIARRVLDI 218 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC--SHHHHHTSCHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC--CHHHHHhCCHHHHHHHhChHHHHHHHHHH
Confidence 4678899999999999987777 8999999999999999998 888888765
No 29
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=87.89 E-value=0.67 Score=38.74 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=42.3
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH--HhccchHHHHHHHH
Q 009729 47 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTWLWNIA 101 (527)
Q Consensus 47 ~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~--~FG~~~G~~L~~~a 101 (527)
-..||.++ ++..+....|. ..||+|++||...+.+.|.+ -||.+.-..+...+
T Consensus 10 l~~~I~~L-~LSvRa~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 64 (86)
T 3k4g_A 10 LLRPVDDL-ELTVRSANCLX-AEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVL 64 (86)
T ss_dssp GGSBGGGG-CCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HhCcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHH
Confidence 35788888 89999999995 99999999999999988754 47776555555544
No 30
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=87.67 E-value=0.3 Score=54.03 Aligned_cols=52 Identities=23% Similarity=0.376 Sum_probs=46.3
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccchHHHHHHHHc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 102 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~G~~L~~~ar 102 (527)
+|+..|||||+..+++|. ..||+|+.||+ ++++.|.+.+|.+.|..++..+.
T Consensus 657 ~~L~qlp~i~~~rar~L~-~~g~~s~~~l~-~~~~~l~~~l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY-NNGIKELGDVV-MNPDKVKNLLGQKLGEKVVQEAA 708 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH-HTTCCSHHHHH-HCHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH-HcCCCCHHHHh-CCHHHHHHHhChhHHHHHHHHHH
Confidence 577799999999999995 99999999999 99999999998778888887553
No 31
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.73 E-value=1.7 Score=36.01 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=39.2
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc
Q 009729 47 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 91 (527)
Q Consensus 47 ~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~ 91 (527)
..+.++-.||+-.-+.+.|+ +.||.|+.|+...++.+|.+..|.
T Consensus 2 ~~l~~~~~p~Lse~~~~~L~-~~~I~Tv~Dfl~~d~~eL~~~~~l 45 (83)
T 2kz3_A 2 GVLRVGLCPGLTEEMIQLLR-SHRIKTVVDLVSADLEEVAQKCGL 45 (83)
T ss_dssp CCCCTTSSTTCCHHHHHHHH-HTTCCCHHHHTTSCHHHHHHHHTC
T ss_pred CccccccCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHhCC
Confidence 34566667999999999995 999999999999999999999996
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.36 E-value=0.7 Score=47.18 Aligned_cols=56 Identities=23% Similarity=0.222 Sum_probs=43.8
Q ss_pred cccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccc--hHHHHHHHHc
Q 009729 46 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 102 (527)
Q Consensus 46 L~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~--~G~~L~~~ar 102 (527)
....+|.+|+|||..+.++|. ..||+|+.+++..++..|.+.-|.. ....+...++
T Consensus 32 ~~~~~l~~l~Gi~~~~~~kL~-~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 32 KIIRSIEDLPGVGPATAEKLR-EAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp ---CCSSCCTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccccHHHcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 344589999999999999995 9999999999999999999888852 2444444443
No 33
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=85.96 E-value=0.7 Score=36.05 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHHc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 102 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~ar 102 (527)
+..++|||.+++.+|.+.+ .++.+|...+.+.|..+ +|...+..++....
T Consensus 16 L~~i~giG~~~a~~Ll~~f--gs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKHF--GSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 5789999999999997555 56889999999999877 66666777766554
No 34
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.76 E-value=0.93 Score=45.05 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccc--hHHHHHHHHc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN--TGTWLWNIAR 102 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~--~G~~L~~~ar 102 (527)
.+|.+|+||+..++++|. ..||.|+.||+..++..|.+.-|.. .+..+...|+
T Consensus 3 ~~~~~l~gi~~~~~~kL~-~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLV-EAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp --CTTSTTCCHHHHHHHH-HHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccHhhcCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHH
Confidence 468889999999999995 9999999999999999998887753 2445555555
No 35
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=84.95 E-value=0.47 Score=40.62 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=42.6
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHH
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIA 101 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~a 101 (527)
.||.+| ++..+....|. ..||+|++||...+...|.+. ||.+.-..+...+
T Consensus 24 ~~Ie~L-~LSvRs~NcLk-ragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 76 (98)
T 1coo_A 24 RPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 76 (98)
T ss_dssp SBGGGG-TCCTTTHHHHH-TTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CcHHHh-CCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHH
Confidence 889999 79999999995 999999999999999988555 8876666665555
No 36
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=84.69 E-value=0.69 Score=38.87 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.0
Q ss_pred cccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 009729 46 LDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79 (527)
Q Consensus 46 L~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~ 79 (527)
|-.-+|.+|||||+.++++|. .-||.+..+|..
T Consensus 15 mgeK~V~evpGIG~~~~~~L~-~~Gf~kAy~lLG 47 (89)
T 1ci4_A 15 MGEKPVGSLAGIGEVLGKKLE-ERGFDKAYVVLG 47 (89)
T ss_dssp CTTCCGGGSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred CCCCCcccCCCcCHHHHHHHH-HcCccHHHHHHH
Confidence 334689999999999999995 999999877765
No 37
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=84.01 E-value=1.2 Score=45.02 Aligned_cols=60 Identities=15% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc--chHHHHHHHHcCCcCccc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEV 109 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~--~~G~~L~~~arGiD~~~V 109 (527)
.|+..|||||+..+++|. ..||.|+.||..++.+.+...+|. ..|..++..++.+..-.|
T Consensus 157 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v 218 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK-EINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVEL 218 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE
T ss_pred CceeCCCCCCHHHHHHHH-hCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 678999999999999995 999999999999999999888774 257888888887766554
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=83.25 E-value=0.5 Score=52.25 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccchHHHHHHHHcCCcC
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGISG 106 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~G~~L~~~arGiD~ 106 (527)
+|+..|||||+..+++|. ..||.|+.||+.++ ..|.+.+|.+.|..++..+. +..
T Consensus 632 ~~L~qlp~v~~~~ar~l~-~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~-~p~ 686 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLY-NAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS-VKS 686 (702)
T ss_dssp HHHHTSTTCCHHHHHHHH-TTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH-HHC
T ss_pred HhhhcCCCCCHHHHHHHH-HcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC-CCc
Confidence 567789999999999995 99999999999999 99999999878999999998 443
No 39
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=82.45 E-value=1.8 Score=43.96 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=49.8
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc--chHHHHHHHHcCCcCccc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEV 109 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~--~~G~~L~~~arGiD~~~V 109 (527)
.|+..|||||...+++|. ..||.|+.||..++.+.+...+|. ..+..++..++-+..-.|
T Consensus 161 ~pL~Qlp~i~~~~~~~l~-~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v 222 (339)
T 2q0z_X 161 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 222 (339)
T ss_dssp CGGGGSTTCCHHHHHHHH-HTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEE
T ss_pred CceecCCCCCHHHHHHHH-hcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEE
Confidence 688999999999999994 999999999999999998888873 246778888877655444
No 40
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=81.41 E-value=0.68 Score=43.91 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hccchHHHHHHHHcCC
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 104 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~~~--FG~~~G~~L~~~arGi 104 (527)
-+..++|||++++.+|...+|-.++- -+...+.+.|.+. .|.+.+++++..+++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k 130 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELKGK 130 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHTTT
T ss_pred HHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 35569999999999998777876655 3777899999988 7888899999988864
No 41
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=80.62 E-value=1.3 Score=49.08 Aligned_cols=54 Identities=15% Similarity=0.319 Sum_probs=42.7
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHHcC
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIARG 103 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~arG 103 (527)
+|+..|||||+..+++|. ..||+|+.||+.++++.|... +|.+....+...++.
T Consensus 646 ~~L~qlp~v~~~rar~L~-~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 701 (720)
T 2zj8_A 646 IPLMQLPLVGRRRARALY-NSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLGK 701 (720)
T ss_dssp GGGTTSTTCCHHHHHHHH-TTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC-
T ss_pred hhhhhCCCCCHHHHHHHH-HcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhccc
Confidence 688899999999999995 999999999999999999877 554434444444443
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=78.78 E-value=0.78 Score=47.00 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.9
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+.+|||||++++++|. ..||+|+.||...
T Consensus 100 l~~V~GiGpk~a~~l~-~~Gi~tledL~~a 128 (335)
T 2fmp_A 100 LTRVSGIGPSAARKFV-DEGIKTLEDLRKN 128 (335)
T ss_dssp HTTSTTCCHHHHHHHH-HTTCCSHHHHHTC
T ss_pred HhCCCCCCHHHHHHHH-HcCCCCHHHHHHh
Confidence 6689999999999997 5599999999974
No 43
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=77.03 E-value=1.9 Score=40.85 Aligned_cols=50 Identities=10% Similarity=0.248 Sum_probs=41.5
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHHHc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNIAR 102 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~ar 102 (527)
+..+||||.+++.+|.+.+| ++.+|...+.+.|... +|.+.+..++...+
T Consensus 164 L~~i~gVg~~~a~~Ll~~fg--s~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERFG--SLERFFTASKAEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHHS--SHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHcC--CHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 45799999999999986665 5899999999999888 77777888877664
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.53 E-value=1.2 Score=50.73 Aligned_cols=31 Identities=35% Similarity=0.559 Sum_probs=28.4
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
.||..++|||++++++|. ++||.|++||+..
T Consensus 115 ~~~~~l~gvg~~~~~~l~-~lgi~~~~dll~~ 145 (780)
T 1gm5_A 115 TDIQYAKGVGPNRKKKLK-KLGIETLRDLLEF 145 (780)
T ss_dssp CCSSSSSSCCHHHHHHHH-TTTCCSSGGGTSC
T ss_pred CCchhcCCCCHHHHHHHH-HCCCCcHHHHHhh
Confidence 489999999999999995 9999999999874
No 45
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=75.24 E-value=1.1 Score=35.60 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+..+||||+++++++.+.+++.++.||..+
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~~s~~eL~~v 58 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPYARVEDLLKV 58 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCCSSGGGGGGS
T ss_pred HHhCCCCCHHHHHHHHHHcccCCHHHHHhC
Confidence 356899999999999866777788887764
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=74.86 E-value=1.6 Score=41.67 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=44.5
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hccchHHHHHHHHcCC
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGI 104 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~~~--FG~~~G~~L~~~arGi 104 (527)
-+..++|||++++.+|...+|..++- .+...+.+.|.+. .|.+.+++++..+++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~k 131 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDR 131 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 34569999999999998667776654 5778899999999 7778899999888753
No 47
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.30 E-value=3.5 Score=43.05 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=45.0
Q ss_pred hcccCCCCcccC--CcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccch--HHHHHHHHc
Q 009729 45 LLDSLPIKKMKQ--LGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNT--GTWLWNIAR 102 (527)
Q Consensus 45 fL~~LPI~kLpG--IG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~--G~~L~~~ar 102 (527)
.-..+||.+|.+ |+.++.++|. ..||.|+.||+..++..|.+..|... ...+...++
T Consensus 77 ~~~~~~~~~l~~~gi~~~~~~~L~-~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~ 137 (400)
T 3lda_A 77 LGSFVPIEKLQVNGITMADVKKLR-ESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAA 137 (400)
T ss_dssp -CCSCBGGGGCCTTCCHHHHHHHH-HTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred ccCccCHHHHHhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345678999987 7899999995 99999999999999999999998632 334444443
No 48
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=73.32 E-value=2.4 Score=47.39 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=43.0
Q ss_pred ccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH--HhccchHHHHHHH
Q 009729 47 DSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTWLWNI 100 (527)
Q Consensus 47 ~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~--~FG~~~G~~L~~~ 100 (527)
.+-..-+|+|+|.++.++|.+..+|.++.||..+..+.|.. .||.+.+..|+..
T Consensus 439 ~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~a 494 (667)
T 1dgs_A 439 ASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQ 494 (667)
T ss_dssp HSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHH
T ss_pred hcccccCcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHH
Confidence 34456689999999999998777899999999998777765 4787777766543
No 49
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=73.21 E-value=1.9 Score=44.08 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=25.0
Q ss_pred CcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 52 KKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 52 ~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
.++||||++++++|. ..||+|+.||...
T Consensus 99 ~~v~GiG~k~a~~l~-~~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWY-QQGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHH-HTTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHH-HcCCCCHHHHHHH
Confidence 489999999999997 5699999999874
No 50
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=71.64 E-value=0.8 Score=45.88 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 91 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~ 91 (527)
.||.+|+||+..+.++|. ..||+|+.+++..++..|.+.-|.
T Consensus 12 ~~~~~l~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~g~ 53 (324)
T 2z43_A 12 KTINDLPGISQTVINKLI-EAGYSSLETLAVASPQDLSVAAGI 53 (324)
T ss_dssp -------------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHH-HcCCCcHHHHHcCCHHHHHHhhCC
Confidence 489999999999999995 999999999999998888877664
No 51
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=70.63 E-value=2.4 Score=43.85 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~TigDLa~ 79 (527)
.+.+|||||++++++|. ..||+|+.||..
T Consensus 103 ~l~~I~GvG~kta~~l~-~~Gi~tledL~~ 131 (360)
T 2ihm_A 103 LFTQVFGVGVKTANRWY-QEGLRTLDELRE 131 (360)
T ss_dssp HHHTSTTCCHHHHHHHH-HTTCCSHHHHHT
T ss_pred HHhCCCCCCHHHHHHHH-HcCCCCHHHHHh
Confidence 35689999999999997 559999999984
No 52
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=69.98 E-value=2.5 Score=44.06 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred CCCcccCCcHHHHHHHHHhcCCCcHHHHhh
Q 009729 50 PIKKMKQLGGKLGTSLQNELGVTTVGDLLK 79 (527)
Q Consensus 50 PI~kLpGIG~k~~~kL~~~lGI~TigDLa~ 79 (527)
.+.+|||||++++++|- ..||+|+.||..
T Consensus 122 ~l~~I~GvGpk~a~~ly-~~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWF-RMGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHH-HTTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHH-HcCCCcHHHHHh
Confidence 35589999999999997 559999999995
No 53
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=69.52 E-value=0.95 Score=44.12 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH-hccchHHHHHHHH
Q 009729 48 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES-YGFNTGTWLWNIA 101 (527)
Q Consensus 48 ~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~-FG~~~G~~L~~~a 101 (527)
..++..|||||++++++|.+. ..++..|..++.+.|.++ +|.+.++.++...
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~--FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY--FGSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH--hCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 457889999999999999744 456888899999999988 5555556555543
No 54
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.42 E-value=4.3 Score=45.45 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=44.8
Q ss_pred hcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHH--HhccchHHHHHHH
Q 009729 45 LLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQE--SYGFNTGTWLWNI 100 (527)
Q Consensus 45 fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~--~FG~~~G~~L~~~ 100 (527)
++.+-..-+|+|+|.++.++|.+..+|.++.||..+..+.|.. .||.+.+..|+..
T Consensus 442 hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~a 499 (671)
T 2owo_A 442 HFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNA 499 (671)
T ss_dssp HHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHH
Confidence 3445567799999999999998677789999999998887766 4787777766644
No 55
>3ai4_A Yeast enhanced green fluorescent protein, DNA POL IOTA; UBM, ubiquitin-binding motif, GFP, fusion, fluorescent prote replication; HET: CR2; 1.60A {Aequorea victoria} PDB: 2kwu_A* 2ktf_B* 2l0g_A*
Probab=66.56 E-value=1.6 Score=43.56 Aligned_cols=24 Identities=50% Similarity=0.945 Sum_probs=19.8
Q ss_pred ccCCccccccCChHHHHHHH-HhhC
Q 009729 480 EEIDPSVIDELPKEIQDEIQ-AWLR 503 (527)
Q Consensus 480 ~~id~~~~~el~~ei~~e~~-~~~~ 503 (527)
-++||.|+.|||+|.|+|+- .|=|
T Consensus 249 ~~vd~~vf~~lp~~vq~el~~~w~~ 273 (283)
T 3ai4_A 249 PDIDPQVFYELPEEVQKELMAEWER 273 (283)
T ss_dssp TTSCHHHHTTSCHHHHHHTTGGGC-
T ss_pred CCCCHHHHHhCCHHHHHHHHHHHHh
Confidence 36999999999999999974 4655
No 56
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=63.92 E-value=2.5 Score=46.18 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=25.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+.+|||||++++.+|. .-||.|+.||...
T Consensus 99 L~~v~GVGpk~A~~i~-~~G~~s~edL~~a 127 (578)
T 2w9m_A 99 LLGVRGLGPKKIRSLW-LAGIDSLERLREA 127 (578)
T ss_dssp HTTSTTCCHHHHHHHH-HTTCCSHHHHHHH
T ss_pred HhCCCCcCHHHHHHHH-HcCCCCHHHHHHH
Confidence 5789999999999997 5599999999974
No 57
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=61.11 E-value=9 Score=30.47 Aligned_cols=48 Identities=25% Similarity=0.241 Sum_probs=37.4
Q ss_pred ccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc--chHHHHHHHHc
Q 009729 54 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIAR 102 (527)
Q Consensus 54 LpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~--~~G~~L~~~ar 102 (527)
..||+...+++|. .-|++|+.+++..+...|..+=|. .....|...|+
T Consensus 11 ~lgI~e~~a~~L~-~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 11 YLDIDEDFATVLV-EEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHTCCHHHHHHHH-HTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHH-HcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 3599999999995 999999999999999999776553 23445544443
No 58
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=57.98 E-value=7.4 Score=37.41 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=42.8
Q ss_pred cccCCcHHHHHHHHHhcCCCcHH-HHhhcCHHHHHHH--hccchHHHHHHHHcCCc
Q 009729 53 KMKQLGGKLGTSLQNELGVTTVG-DLLKFSEDKLQES--YGFNTGTWLWNIARGIS 105 (527)
Q Consensus 53 kLpGIG~k~~~kL~~~lGI~Tig-DLa~~~~~~L~~~--FG~~~G~~L~~~arGiD 105 (527)
.++|||++++.++...+|..++. .+..-++..|.+. .|+++++++...+++.-
T Consensus 92 sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 92 SVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp TSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred CcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 39999999999998778887776 3667788888887 46678899988888753
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=53.51 E-value=7.6 Score=47.91 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc--chHHHHHHHHcCCcCccc
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF--NTGTWLWNIARGISGEEV 109 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~--~~G~~L~~~arGiD~~~V 109 (527)
.|+..|||||+..+++|. ..||.|+.||+.++.+.+...++. ..|..+.+.++....-.|
T Consensus 1557 ~~L~qip~i~~~~ar~l~-~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~i~~ 1618 (1724)
T 4f92_B 1557 SYLKQLPHFTSEHIKRCT-DKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 1618 (1724)
T ss_dssp CGGGGSTTCCHHHHHHHH-HHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHHSCCEEE
T ss_pred cCEecCCCCCHHHHHHHH-HCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHhCCceEE
Confidence 678999999999999995 999999999999999999888874 246667777776544433
No 60
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=52.33 E-value=11 Score=39.98 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=37.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccchHHHHHHHHcCC
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIARGI 104 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~G~~L~~~arGi 104 (527)
+..|+|||+.++++|.+.|| |+.-+..++.+.|+. -|. |..-.+...|.
T Consensus 470 LtAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGI--GekqarrI~gl 518 (685)
T 4gfj_A 470 LISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGL--TDAQIRELKGL 518 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTC--CHHHHHHHHTC
T ss_pred eeccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccc--cHHHHHHHhhH
Confidence 45789999999999988887 777888888888855 675 55555666665
No 61
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=49.98 E-value=13 Score=40.92 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=42.7
Q ss_pred CCCCcccCCcHHHHHHHHHhcC-CCcHHHHhhcCHHHHHH--HhccchHHHHHHHH
Q 009729 49 LPIKKMKQLGGKLGTSLQNELG-VTTVGDLLKFSEDKLQE--SYGFNTGTWLWNIA 101 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lG-I~TigDLa~~~~~~L~~--~FG~~~G~~L~~~a 101 (527)
-..=+|-|+|.++.++|. ..| |.++.||..+..+.|.. .||.+.+..|+...
T Consensus 446 r~amdI~GlG~~~i~~L~-~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 446 RRAMDVDGMGDKIIDQLV-EKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TTTTCCTTCCHHHHHHHH-HTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHHHHH-hcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 345578999999999997 777 59999999999998876 58887788776654
No 62
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=47.73 E-value=3.9 Score=41.35 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred cC-CCCccc--CCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc
Q 009729 48 SL-PIKKMK--QLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF 91 (527)
Q Consensus 48 ~L-PI~kLp--GIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~ 91 (527)
++ ||.+|+ ||+..+.++|. ..||+|+.||+..++..|.+.-|.
T Consensus 23 ~~~~~~~l~~~g~~~~~~~~l~-~~g~~t~~~~~~~~~~~l~~~~~i 68 (343)
T 1v5w_A 23 LFQDIDLLQKHGINVADIKKLK-SVGICTIKGIQMTTRRALCNVKGL 68 (343)
T ss_dssp -----------------------------------------------
T ss_pred ccCcHHHHhhCCCCHHHHHHHH-HcCCCcHHHHHhCCHHHHHHhhCC
Confidence 44 899998 99999999995 999999999999998888877664
No 63
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=46.84 E-value=22 Score=30.36 Aligned_cols=53 Identities=19% Similarity=0.407 Sum_probs=40.9
Q ss_pred cCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccchHHHHHHHHc
Q 009729 39 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 102 (527)
Q Consensus 39 ~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~G~~L~~~ar 102 (527)
++++..||.. .|....+. +.||+.|-.||..++.+.|+.+.| ..|.+||..+.
T Consensus 26 p~EV~~WL~~------kgFS~~tv----~~Lg~ltGaqLf~Ltk~eL~~vCg-~EG~RlysqL~ 78 (99)
T 1wwu_A 26 PDEVRAWLEA------KAFSPRIV----ENLGILTGPQLFSLNKEELKKVCG-EEGVRVYSQLT 78 (99)
T ss_dssp HHHHHHHHHH------HTCCTTHH----HHTTSSCHHHHHTCCHHHHHHHHT-TTHHHHHHHHH
T ss_pred HHHHHHHHHH------cCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCc-chhHHHHHHHH
Confidence 4566666643 34554443 478999999999999999999999 47999998765
No 64
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=46.31 E-value=7.2 Score=42.50 Aligned_cols=17 Identities=24% Similarity=0.749 Sum_probs=12.3
Q ss_pred cccccCChHHHHHHHHhhCC
Q 009729 485 SVIDELPKEIQDEIQAWLRP 504 (527)
Q Consensus 485 ~~~~el~~ei~~e~~~~~~~ 504 (527)
.|+|-++. .+|..||+.
T Consensus 555 ~v~n~~~~---~~~~~~l~~ 571 (575)
T 3b0x_A 555 RVLNTLDY---EDLLSWLKA 571 (575)
T ss_dssp TBGGGSCH---HHHHHHHHS
T ss_pred HeecCCCH---HHHHHHHHh
Confidence 36777776 578888875
No 65
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=44.78 E-value=11 Score=40.88 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=25.8
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+..+||||++++.++...+|+.|+.||...
T Consensus 95 l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a 124 (575)
T 3b0x_A 95 VMEVPGVGPKTARLLYEGLGIDSLEKLKAA 124 (575)
T ss_dssp HHTSTTTCHHHHHHHHHTSCCCSHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHHhcCCCCHHHHHHH
Confidence 457999999999998756899999999863
No 66
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=42.14 E-value=11 Score=38.56 Aligned_cols=52 Identities=12% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCcccCCcHHHHHHHHHhc----CCCcHHHHhhcCHHHHHHHh------ccchHHHHHHHHcCCcCc
Q 009729 51 IKKMKQLGGKLGTSLQNEL----GVTTVGDLLKFSEDKLQESY------GFNTGTWLWNIARGISGE 107 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~l----GI~TigDLa~~~~~~L~~~F------G~~~G~~L~~~arGiD~~ 107 (527)
+..|||||+++++++. .+ .+..+.+|... .. +...| |++++..+|+. |+..-
T Consensus 59 l~~lpGIG~~~A~kI~-E~l~tG~~~~le~l~~~-~p-~l~ll~~v~GiG~k~a~~l~~~--Gi~tl 120 (335)
T 2bcq_A 59 ACSIPGIGKRMAEKII-EILESGHLRKLDHISES-VP-VLELFSNIWGAGTKTAQMWYQQ--GFRSL 120 (335)
T ss_dssp HHTSTTCCHHHHHHHH-HHHHSSSCGGGGGCCTT-HH-HHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCccHHHHHHHH-HHHHcCCchHHHHHhhh-hH-HHHHHhcCCCcCHHHHHHHHHc--CCCCH
Confidence 5678999999999986 44 34445555321 11 33344 45667777765 87654
No 67
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=42.02 E-value=13 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.9
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~ 80 (527)
+..|||||+++++++-+.-++.++.||...
T Consensus 28 L~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 28 FIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 446899999999999754467888888865
No 68
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.99 E-value=28 Score=29.71 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=40.3
Q ss_pred cCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccchHHHHHHHHc
Q 009729 39 FSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFNTGTWLWNIAR 102 (527)
Q Consensus 39 ~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~~G~~L~~~ar 102 (527)
++++..||.. .|....+. +.||+.|-.||..++.++|+.+.| .|.+||..+.
T Consensus 36 p~EV~~WL~~------kgFS~~tv----~~Lg~ltGaqLl~Ltk~eL~~vCg--EG~RlysqL~ 87 (99)
T 2e8m_A 36 PEDVKTWLQS------KGFNPVTV----NSLGVLNGAQLFSLNKDELRTVCP--EGARVYSQIT 87 (99)
T ss_dssp TTHHHHHHHH------HTCCHHHH----HHTSSSCHHHHHHCCHHHHHHHCT--THHHHHHHHH
T ss_pred HHHHHHHHHH------cCCCHHHH----HHHcCCCHHHHHcCCHHHHHHHCC--chHHHHHHHH
Confidence 5666666642 35555543 478999999999999999999999 4999998764
No 69
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=40.06 E-value=15 Score=30.53 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.1
Q ss_pred CCcccCCcHHHHHHHHHhc----CCCcHHHHhhc
Q 009729 51 IKKMKQLGGKLGTSLQNEL----GVTTVGDLLKF 80 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~l----GI~TigDLa~~ 80 (527)
+..|+|||.++++++.+.. .+.++.||..+
T Consensus 42 L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v 75 (98)
T 2edu_A 42 LRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred HHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhC
Confidence 4568999999998887444 35677777665
No 70
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=37.87 E-value=18 Score=34.81 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCcccCCcHHHHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQ 66 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~ 66 (527)
+.+|||||+|++.||.
T Consensus 28 l~~LPGIG~KsA~RlA 43 (212)
T 3vdp_A 28 LSKLPGIGPKTAQRLA 43 (212)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHH
Confidence 5679999999999995
No 71
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=36.87 E-value=14 Score=33.91 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=28.2
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQES 88 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~~~ 88 (527)
++.|.|||+.++..+.+.+||. .++||-.-..+.|...
T Consensus 30 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~ 70 (152)
T 3iz6_M 30 LTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAV 70 (152)
T ss_dssp HTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHH
Confidence 4679999999999988899994 6676665444444444
No 72
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=36.51 E-value=25 Score=31.53 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=47.1
Q ss_pred cccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhccc
Q 009729 16 AHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGFN 92 (527)
Q Consensus 16 A~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~~ 92 (527)
++-|-+-+-...+.+|+..-...|..+.+||..+ |++ +....+. ..||.+...|..++.+.| ..+|+.
T Consensus 56 gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~i------gL~-qY~~~F~-~~g~d~~~~l~~lt~~dL-~~lGI~ 123 (149)
T 3sei_A 56 GHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMI------GLA-QYYKVLV-DNGYENIDFITDITWEDL-QEIGIT 123 (149)
T ss_dssp HHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHT------TCG-GGHHHHH-HTTCCSHHHHTTCCHHHH-HHHTCC
T ss_pred HHHHHHHHHHHHHHhccccCCCCcccHHHHHHHc------Cch-hhHHHHH-HCCCchHHHHhhCCHHHH-HHCCCC
Confidence 4555444444556666543233467899999877 454 4555674 899999999999999988 567874
No 73
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=36.13 E-value=20 Score=32.18 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=30.5
Q ss_pred EEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcC
Q 009729 35 TTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFS 81 (527)
Q Consensus 35 ~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~ 81 (527)
.-|...++.+|. .+||||++.++++-+.-...++.||.+.+
T Consensus 55 IniNtA~~~eL~------~LpGiGp~~A~~II~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 55 IDLNNTNIAAFI------QYRGLYPTLAKLIVKNAPYESVEDVLNIP 95 (134)
T ss_dssp EETTTSCGGGGG------GSTTCTHHHHHHHHHTCCCSSGGGGGGCT
T ss_pred eeCcccCHHHHH------HCCCCCHHHHHHHHHcCCCCCHHHHHhCC
Confidence 445566666554 58999999999997333678999999864
No 74
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=35.65 E-value=26 Score=36.05 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=34.9
Q ss_pred CCcccCCcHHHHHHHHHhc----CCCcHHHHhh-c-C--HHHHHHHhc--cchHHHHHHHHcCCcCc
Q 009729 51 IKKMKQLGGKLGTSLQNEL----GVTTVGDLLK-F-S--EDKLQESYG--FNTGTWLWNIARGISGE 107 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~l----GI~TigDLa~-~-~--~~~L~~~FG--~~~G~~L~~~arGiD~~ 107 (527)
+..|||||+++++++. .+ -+..+.+|.. - + ...|.+++| ++++..+|+. |+..-
T Consensus 63 l~~lpGIG~~~A~kI~-E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~--Gi~tl 126 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQ-ELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE--GLRTL 126 (360)
T ss_dssp GTTCTTCCHHHHHHHH-HHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCCHHHHHHHH-HHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 7789999999999986 44 3444555553 1 1 234555655 4567777765 88654
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=34.85 E-value=30 Score=38.72 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=8.9
Q ss_pred CCcccCCcHHHHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQ 66 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~ 66 (527)
|..++|+|.|.++.|.
T Consensus 482 L~~l~gfG~Ksa~nLl 497 (671)
T 2owo_A 482 LTGLERMGPKSAQNVV 497 (671)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred hhcccccchhHHHHHH
Confidence 3445666666655554
No 76
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=34.09 E-value=22 Score=30.92 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQ 86 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~ 86 (527)
++.|.|||..++..+.+.+||. .++||-.-..+.|.
T Consensus 18 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~ 56 (114)
T 3r8n_M 18 LTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLR 56 (114)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHH
T ss_pred HhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHH
Confidence 4789999999999998899995 45555543333333
No 77
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=32.68 E-value=16 Score=39.92 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=51.8
Q ss_pred EEcccHHHHHHHhcCCCCCCeEEeccCCHHhhcccCCCCcccCCcHHHHHHHHHhcCCCcHHHHhh-cCHHHHHHHhccc
Q 009729 14 GIAHNKMLAKLASGMNKPAQQTTVPFSSVKGLLDSLPIKKMKQLGGKLGTSLQNELGVTTVGDLLK-FSEDKLQESYGFN 92 (527)
Q Consensus 14 GIA~NKlLAKLAS~~aKPnG~~vl~~e~v~~fL~~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~-~~~~~L~~~FG~~ 92 (527)
|||+-+-++-+.. |+ .+.+++...+..-.|..+||||+|+++++ ..||.-..++.. ++..+...
T Consensus 104 GVGpk~A~~i~~~------G~--~s~edL~~a~~~~~L~~~~GiG~Ktaq~I--~~~l~~~~~~~~r~~~~e~~~----- 168 (578)
T 2w9m_A 104 GLGPKKIRSLWLA------GI--DSLERLREAAESGELAGLKGFGAKSAATI--LENVVFLFEARQRQSLRAGLA----- 168 (578)
T ss_dssp TCCHHHHHHHHHT------TC--CSHHHHHHHHHHTTTTTSTTCCHHHHHHH--HHHHHHHHHHCSSEEHHHHHH-----
T ss_pred CcCHHHHHHHHHc------CC--CCHHHHHHHHhhCccccCCCCCHHHHHHH--HHHHHHHHhhcCCeeHHHHHH-----
Confidence 7787665555432 33 24566666655568999999999999988 367777777665 45554443
Q ss_pred hHHHHHHHHcCCc
Q 009729 93 TGTWLWNIARGIS 105 (527)
Q Consensus 93 ~G~~L~~~arGiD 105 (527)
.+..+...+++++
T Consensus 169 ~~~~i~~~l~~~~ 181 (578)
T 2w9m_A 169 VAEELAGALTDLS 181 (578)
T ss_dssp HHHHHHHHTGGGC
T ss_pred HHHHHHHHHHhCC
Confidence 3556777888777
No 78
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.48 E-value=22 Score=32.29 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=29.9
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHHh
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESY 89 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~~~F 89 (527)
.-++.|.|||++++..+.+.+||. .++||-.-..+.|...+
T Consensus 30 ~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 30 YALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred hhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 346789999999999998899994 66666654444454444
No 79
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=31.61 E-value=33 Score=35.61 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=34.3
Q ss_pred CCcccCCcHHHHHHHHHhc---CCCcHHHHhh-cC---HHHHHHHhc--cchHHHHHHHHcCCcCc
Q 009729 51 IKKMKQLGGKLGTSLQNEL---GVTTVGDLLK-FS---EDKLQESYG--FNTGTWLWNIARGISGE 107 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~l---GI~TigDLa~-~~---~~~L~~~FG--~~~G~~L~~~arGiD~~ 107 (527)
+.+|||||+++++++.+-+ -+..+.+|.. -- ...|.+++| ++++..+|+. |+..-
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~--Gi~tl 145 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM--GFRTL 145 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc--CCCcH
Confidence 7899999999999986322 3334445543 11 224455555 4567777765 88654
No 80
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=31.27 E-value=25 Score=34.16 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=13.9
Q ss_pred CCcccCCcHHHHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQ 66 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~ 66 (527)
+.+|||||+|+++||.
T Consensus 14 l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 14 LSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHTSTTCCHHHHHHHH
T ss_pred HhHCCCCCHHHHHHHH
Confidence 4578999999999995
No 81
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=29.98 E-value=29 Score=35.31 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCcccCCcHHHHHHHHHhc---CCCcHHHHhhcC----HHHHHHHhc--cchHHHHHHHHcCCcCc
Q 009729 51 IKKMKQLGGKLGTSLQNEL---GVTTVGDLLKFS----EDKLQESYG--FNTGTWLWNIARGISGE 107 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~l---GI~TigDLa~~~----~~~L~~~FG--~~~G~~L~~~arGiD~~ 107 (527)
+..|||||+++++++.+-+ -+..+.+|..-. ...|.+++| ++++..+|+. |+..-
T Consensus 59 l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~--Gi~tl 122 (335)
T 2fmp_A 59 AKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE--GIKTL 122 (335)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT--TCCSH
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc--CCCCH
Confidence 5688999999999986322 233344444332 233445554 4567777765 88654
No 82
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=28.71 E-value=26 Score=32.14 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=30.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHHhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESYG 90 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~~~FG 90 (527)
++.|.|||..++..+...+||. .++||-.-....|...+.
T Consensus 32 Lt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~ 74 (155)
T 2xzm_M 32 LTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIA 74 (155)
T ss_dssp HTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHH
T ss_pred eecccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHh
Confidence 5789999999999998899995 466666555555555544
No 83
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=27.85 E-value=49 Score=36.94 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=23.1
Q ss_pred ccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHH--hccchHHHHHHH
Q 009729 54 MKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQES--YGFNTGTWLWNI 100 (527)
Q Consensus 54 LpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~--FG~~~G~~L~~~ 100 (527)
|+|||.++++.|.+.+ .++..|...+.+.|... +|...+..++..
T Consensus 512 I~~VG~~~Ak~La~~F--gsl~~l~~As~eeL~~I~GIG~~~A~sI~~f 558 (667)
T 1dgs_A 512 LPGVGEVLARNLARRF--GTMDRLLEASLEELIEVEEVGELTARAILET 558 (667)
T ss_dssp CSSCCHHHHHHHHHTT--SBHHHHTTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHc--CCHHHHHhCCHHHHHhccCcCHHHHHHHHHH
Confidence 4566666666664222 34555666666666555 333334444433
No 84
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=26.39 E-value=39 Score=22.01 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCccccCCCCCCCc-cccccC
Q 009729 340 SSSLDQNKPQNRDD-SRMRSV 359 (527)
Q Consensus 340 ~~~~~~~~~~~~~~-~~~~~~ 359 (527)
+.|-||.+|++.++ +||-.+
T Consensus 5 ymgtcqdepeqlddw~riael 25 (28)
T 3ro2_B 5 YMGTCQDEPEQLDDWNRIAEL 25 (28)
T ss_dssp CCCSCCCCCCCCCCTTTGGGC
T ss_pred eeccccCCcccchhHHHHHHH
Confidence 56789999998888 887443
No 85
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=25.69 E-value=54 Score=40.51 Aligned_cols=60 Identities=10% Similarity=0.231 Sum_probs=50.2
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhcc-chHHHHHHHHcCCcCccc
Q 009729 48 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYGF-NTGTWLWNIARGISGEEV 109 (527)
Q Consensus 48 ~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG~-~~G~~L~~~arGiD~~~V 109 (527)
..|+..++|||....++|. ..|+ |+.+|.+++..+|...++. ..|..++..++-+..-.+
T Consensus 725 ~~~L~q~~~i~~~~~~~l~-~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~ 785 (1724)
T 4f92_B 725 MCPLRQFRKLPEEVVKKIE-KKNF-PFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLEL 785 (1724)
T ss_dssp SCGGGGSTTSCHHHHHHHH-TSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEE
T ss_pred CCceecCCCCCHHHHHHHH-hcCC-CHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceE
Confidence 4789999999999999994 8998 9999999999888776653 359999999998766444
No 86
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.54 E-value=26 Score=31.84 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHHHhc
Q 009729 51 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQESYG 90 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~~~FG 90 (527)
++.|.|||.+++..+...+||. .++||-.-..+.|+..+.
T Consensus 25 Lt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~ 67 (148)
T 3j20_O 25 LTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILA 67 (148)
T ss_dssp HHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHH
T ss_pred hhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHh
Confidence 4678999999999998899995 566666554555555543
No 87
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=24.01 E-value=25 Score=31.21 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=26.4
Q ss_pred CCcccCCcHHHHHHHHHhcCCC---cHHHHhhcCHHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQNELGVT---TVGDLLKFSEDKLQE 87 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~---TigDLa~~~~~~L~~ 87 (527)
++.|+|||..++..+...+||. .++||-+-....|..
T Consensus 19 Lt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~ 58 (126)
T 2vqe_M 19 LTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLRE 58 (126)
T ss_dssp HTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHHHH
Confidence 4789999999999998889995 456655433333333
No 88
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=23.96 E-value=20 Score=28.95 Aligned_cols=36 Identities=11% Similarity=0.331 Sum_probs=30.9
Q ss_pred CCcccccccccccccccccCCccccccCChHHHHHH
Q 009729 463 CGSDQIQQRSESWKLRIEEIDPSVIDELPKEIQDEI 498 (527)
Q Consensus 463 ~~~~~~~~~~~~w~~~~~~id~~~~~el~~ei~~e~ 498 (527)
|+.+.+..-+|+=.|.=+-||.+++.+|-+|+-+++
T Consensus 12 aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr~L 47 (72)
T 3idw_A 12 CGVDVSNCQRYTINFDREQLTEDMMPDINNSMLRTL 47 (72)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHHHT
T ss_pred cCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHHHc
Confidence 566666666888899999999999999999999874
No 89
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.89 E-value=38 Score=29.78 Aligned_cols=28 Identities=29% Similarity=0.596 Sum_probs=23.8
Q ss_pred cccccccccCCc--------cccccCChHHHHHHHH
Q 009729 473 ESWKLRIEEIDP--------SVIDELPKEIQDEIQA 500 (527)
Q Consensus 473 ~~w~~~~~~id~--------~~~~el~~ei~~e~~~ 500 (527)
.+|-=+...||- +|.++||.||++|+..
T Consensus 71 ~SwVAk~~~i~~~vPG~YAlkV~g~lp~~i~~~le~ 106 (120)
T 3h7h_A 71 DSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKS 106 (120)
T ss_dssp GCHHHHHTTCTTSCSEEEEEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCeEEEEecCcCCHHHHHHHHH
Confidence 477777777776 8999999999999987
No 90
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=23.33 E-value=17 Score=40.22 Aligned_cols=9 Identities=22% Similarity=0.014 Sum_probs=0.0
Q ss_pred CcHHHHHHH
Q 009729 57 LGGKLGTSL 65 (527)
Q Consensus 57 IG~k~~~kL 65 (527)
+|.|.++.|
T Consensus 505 ~g~ksa~nL 513 (615)
T 3sgi_A 505 ELSANGKRL 513 (615)
T ss_dssp ---------
T ss_pred ccchHHHHH
Confidence 344544444
No 91
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=22.95 E-value=45 Score=34.71 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=35.1
Q ss_pred CCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHHHHhc--cchHHHHH
Q 009729 51 IKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQESYG--FNTGTWLW 98 (527)
Q Consensus 51 I~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~~~FG--~~~G~~L~ 98 (527)
+.++|+||++++++|.+.|| |+..|..++.+.|.+.=| ...+..+.
T Consensus 317 Ls~IPrl~~~iae~Lv~~FG--sLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 317 LKTVARIPLSIGYNVVRMFK--TLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHTSCCCHHHHHHHHHHHC--SHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHHhC--CHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 45799999999999976665 889999999999987754 33444443
No 92
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=22.81 E-value=18 Score=36.77 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred cCCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHH--HHHhccchHH
Q 009729 48 SLPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKL--QESYGFNTGT 95 (527)
Q Consensus 48 ~LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L--~~~FG~~~G~ 95 (527)
.+||.+| .+.-+...-| ++-||+|+|||.+.+.+.| .+-||.+...
T Consensus 253 ~~~i~~L-~LsvRs~NcL-k~a~I~ti~dL~~~se~~l~~~~n~G~kSl~ 300 (315)
T 2a6h_A 253 DLPLEEL-GLSTRVLHSL-KEEGIESVRALLALNLKDLKNIPGIGERSLE 300 (315)
T ss_dssp --------------------------------------------------
T ss_pred cCcHHHc-cCcHHHHHHH-HHcCCcCHHHHhhCCHHHHhcCCCCCcchHH
Confidence 3888888 6888889999 4999999999999998877 3557765433
No 93
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=21.00 E-value=20 Score=36.61 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=0.0
Q ss_pred CCCCcccCCcHHHHHHHHHhcCCCcHHHHhhcCHHHHH--HHhccch
Q 009729 49 LPIKKMKQLGGKLGTSLQNELGVTTVGDLLKFSEDKLQ--ESYGFNT 93 (527)
Q Consensus 49 LPI~kLpGIG~k~~~kL~~~lGI~TigDLa~~~~~~L~--~~FG~~~ 93 (527)
.||.+| .+.-+...-|. +.||+|+|||.+.+.+.|. +-||.+.
T Consensus 255 ~~I~eL-eLsvRs~NCLK-ra~I~tv~dL~~~se~dLlki~n~G~kS 299 (329)
T 3lu0_A 255 RPVDDL-ELTVRSANCLK-AEAIHYIGDLVQRTEVELLKTPNLGKKS 299 (329)
T ss_dssp -----------------------------------------------
T ss_pred hhHHhh-cCCHHHHHHHH-HcCCcCHHHHhhCCHHHHhhCcCCChhh
Confidence 467887 67788888994 9999999999999988774 4466643
Done!