BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009730
         (527 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q56XX3|Y2215_ARATH Uncharacterized protein At2g02148 OS=Arabidopsis thaliana
           GN=At2g02148 PE=2 SV=1
          Length = 432

 Score = 35.4 bits (80), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 9/107 (8%)

Query: 2   MDLSSLPEAQQQNQDYASQSYY---DQTQIQSYDQSYYYYYHQQQQHHHAYYQQSYYSTA 58
           +D S+L   Q   +D + Q +     +  + S    ++   HQ  QHH + YQ  + +T 
Sbjct: 311 IDSSTLANTQGFREDQSQQQHTPSPSKHHMSSLSHQFHQSIHQSHQHHQSIYQSQHAATH 370

Query: 59  YQSLPHQQYPETS-----TLNP-PGVSVSANEAAEIAGPGGAQQARQ 99
           Y S  HQ  PE S      L P  G  V  N  A+     GAQ  R+
Sbjct: 371 YPSQNHQCDPELSHTQMACLQPLTGGHVMPNSPAKFCDQCGAQYLRE 417


>sp|Q54DS4|Y2056_DICDI WD repeat-containing protein DDB_G0292056 OS=Dictyostelium discoideum
            GN=DDB_G0292056 PE=4 SV=1
          Length = 1823

 Score = 33.9 bits (76), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 12/50 (24%)

Query: 38   YYHQQQQHHHAYYQQ--SYYSTAYQS----------LPHQQYPETSTLNP 75
            +YHQQQ H H Y Q   SY  T YQ           LP Q+    ST +P
Sbjct: 1715 HYHQQQPHTHNYQQHISSYAHTTYQPHTPRNNGQPVLPQQRRYSISTFDP 1764


>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3
          Length = 939

 Score = 33.5 bits (75), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 250 CELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPM-AEIQTEQKPIAECQTE--- 305
           C+LC V CT       H  G +H+K      +L K +  +   + TE  P AE +     
Sbjct: 321 CDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKLGKPIPTLEPALATESPPGAEAKPTSPT 380

Query: 306 -----ASERPELAQDGEEKEAAVDVPSE 328
                AS RP LA+     +A  + P E
Sbjct: 381 GPSVCASSRPALAKRPVASKALCEGPPE 408



 Score = 33.1 bits (74), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 228 PLLSTAAAGKVEPSQQPLKSAWCELCRVDCTSLQILEQHRNGKRHRKN 275
           PL S     K  P Q  L+  +C++C++ C   Q   +H  G++HRK 
Sbjct: 253 PLPSKLPRPKAGPRQ--LQLHYCDICKISCAGPQTYREHLGGQKHRKK 298


>sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens GN=ZNF385A PE=2 SV=1
          Length = 366

 Score = 33.1 bits (74), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 249 WCELCRVDCTSLQILEQHRNGKRHRKNLLRIEELRKAVKPM 289
           +C LC+V   SL  LE H  G +H+     I E R  + P+
Sbjct: 182 YCALCKVAVNSLSQLEAHNKGTKHKT----ILEARSGLGPI 218


>sp|Q6PBT9|Z385B_DANRE Zinc finger protein 385B OS=Danio rerio GN=znf385b PE=2 SV=1
          Length = 492

 Score = 33.1 bits (74), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 246 KSAWCELCRVDCTSLQILEQHRNGKRHRKNL 276
           K  +C LC+V   SL  LE H  G +H+  L
Sbjct: 304 KLLYCSLCKVAVNSLSQLEAHNTGSKHKTML 334


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,086,325
Number of Sequences: 539616
Number of extensions: 10368991
Number of successful extensions: 43064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 804
Number of HSP's that attempted gapping in prelim test: 35967
Number of HSP's gapped (non-prelim): 5576
length of query: 527
length of database: 191,569,459
effective HSP length: 122
effective length of query: 405
effective length of database: 125,736,307
effective search space: 50923204335
effective search space used: 50923204335
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)