BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009732
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
pdb|1JOC|B Chain B, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol
1,3-Diphosphate
Length = 125
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
+W D+ CM CG F + RHHCR CG IFC ECS +L P P RVCD
Sbjct: 62 KWAEDNEVQNCMACGKGF-SVTVRRHHCRQCGNIFCAECSAKNALTPSS---KKPVRVCD 117
Query: 273 VCCVRLQ 279
C LQ
Sbjct: 118 ACFNDLQ 124
>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With
Inositol 1,3-Bisphosphate
pdb|1HYJ|A Chain A, Solution Structure Of The Eea1 Fyve Domain
Length = 65
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 213 RWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD 272
+W D+ CM CG F + RHHCR CG IFC ECS +L P P RVCD
Sbjct: 2 KWAEDNEVQNCMACGKGF-SVTVRRHHCRQCGNIFCAECSAKNALTPSS---KKPVRVCD 57
Query: 273 VCCVRLQ 279
C LQ
Sbjct: 58 ACFNDLQ 64
>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve
Domain From Leishmania Major
Length = 84
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 214 WLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV 273
W D A AC CG F + RHHCR CG + CG+CS+ R+ +P++ +++P+RVCD
Sbjct: 15 WQEDEDAPACNGCGCVFTTTV-RRHHCRNCGYVLCGDCSRHRAAIPMRG-ITEPERVCDA 72
Query: 274 CCVRLQS 280
C + L+S
Sbjct: 73 CYLALRS 79
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVC 271
P W+ A C C V+F +M +HHCR CG IFCG+CS S +P KF + RVC
Sbjct: 159 PDWV---DAEECHRCRVQF-GVMTRKHHCRACGQIFCGKCSSKYSTIP-KFGIEKEVRVC 213
Query: 272 DVC 274
+ C
Sbjct: 214 EPC 216
>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing
Protein
Length = 82
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 214 WLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV 273
WL D A+ C C F I +HHCR CG IFC CS LP P RVCD
Sbjct: 13 WLKDDEATHCRQCEKEF-SISRRKHHCRNCGHIFCNTCSSNELALP---SYPKPVRVCDS 68
Query: 274 C 274
C
Sbjct: 69 C 69
>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16)
At 1.1a Resolution
Length = 90
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 206 LLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVS 265
+L + P W+ DS A CM C V+F RHHCR CG +FCG C + L +
Sbjct: 6 VLGQKQPTWVPDSEAPNCMNCQVKFTFTK-RRHHCRACGKVFCGVCCNRKCKLQY---LE 61
Query: 266 DPQRVCDVC 274
RVC VC
Sbjct: 62 KEARVCVVC 70
>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of
Vps27p Protein From Saccharomyces Cerevisiae
Length = 73
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRV 270
P W+ + ACM+C +F ++ +HHCR CGG+FC E S LP + +P RV
Sbjct: 5 PADWI---DSDACMICSKKF-SLLNRKHHCRSCGGVFCQEHSSNSIPLP-DLGIYEPVRV 59
Query: 271 CDVC 274
CD C
Sbjct: 60 CDSC 63
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 177 SWMSSHLLEQAWQEMAQTLT--EANFGNVSELLDAEP-------PRWLADSSASACMLCG 227
+W + +Q + T+T +A EL +A+ P W + C C
Sbjct: 112 TWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNW---ADGRVCHRCR 168
Query: 228 VRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279
V F +HHCR CG +FCG+C+ + LP K+ + RVCD C LQ
Sbjct: 169 VEF-TFTNRKHHCRNCGQVFCGQCTAKQCPLP-KYGIEKEVRVCDGCFAALQ 218
>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve
Domain-Containing Protein 12
Length = 89
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 214 WLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV 273
WL D A+ C C F I +HHCR CG IFC CS LP P RVCD
Sbjct: 20 WLKDDEATHCRQCEKEF-SISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDS 75
Query: 274 C 274
C
Sbjct: 76 C 76
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSD 266
L PP + + C CG F + RHHC CG I C CS+ + P+K+
Sbjct: 362 LGERPPTLVPVTHVXXCXNCGCDF-SLTLRRHHCHACGKIVCRNCSRNK--YPLKYLKDR 418
Query: 267 PQRVCDVC 274
+VCD C
Sbjct: 419 XAKVCDGC 426
>pdb|2HVB|A Chain A, Crystal Structure Of Hypothetical Protein Ph1083 From
Pyrococcus Horikoshii Ot3
pdb|2HVB|B Chain B, Crystal Structure Of Hypothetical Protein Ph1083 From
Pyrococcus Horikoshii Ot3
pdb|2HVB|C Chain C, Crystal Structure Of Hypothetical Protein Ph1083 From
Pyrococcus Horikoshii Ot3
pdb|2HVB|D Chain D, Crystal Structure Of Hypothetical Protein Ph1083 From
Pyrococcus Horikoshii Ot3
Length = 124
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 122 FHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHALAKGDIHG 173
FH +GG FP + +G ++ LT V + +GK++AL+ +IHG
Sbjct: 65 FHPEGGQFP-ILVGRVEFTNHSDPLTEPRAVFFFKTSKKGKLYALSYCNIHG 115
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 293 AQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQA 352
++L TRD + L+ F W + ++YK A +RGY + L ++ L ++
Sbjct: 392 SELTTRDKASDAILKQPGQFAW-IIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQ--LAKS 448
Query: 353 KGLAILSVAKV 363
G+ + +AK
Sbjct: 449 TGMKVADLAKT 459
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 230 FHPIMCSRHHCRFCGGIFCGECSKG 254
+ P+ C C G I CG+C G
Sbjct: 59 YRPVRCRTSQCSLSGSIACGDCFNG 83
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 230 FHPIMCSRHHCRFCGGIFCGECSKG 254
+ P+ C C G I CG+C G
Sbjct: 59 YRPVRCRTSQCSLSGSIACGDCFNG 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,585,394
Number of Sequences: 62578
Number of extensions: 634874
Number of successful extensions: 1478
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1460
Number of HSP's gapped (non-prelim): 15
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)