BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009733
(527 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449447609|ref|XP_004141560.1| PREDICTED: uncharacterized protein LOC101208317 [Cucumis sativus]
gi|449517953|ref|XP_004166008.1| PREDICTED: uncharacterized LOC101208317 [Cucumis sativus]
Length = 506
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 306/536 (57%), Positives = 375/536 (69%), Gaps = 41/536 (7%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+PL+RTKVVIRHLPPSLS +DL D F R+NW +RPGK+S K QRY+RA
Sbjct: 1 MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTS----QKDQRYARA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ +P VFEFAE +GHVFVNEKGAQ+KA+VEYAPSQRVP+ ++KD REGTI+KDP
Sbjct: 57 YIDFTRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
DYLEFLK+IAKPAE+LPSAEIQLERKEAE SGA KET +VTPLME+VRQKRA ESG Q S
Sbjct: 117 DYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGS 176
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPA 240
+V R +R AAS+ K S + KRG EKKKYILKDS KN R+DKS F +V +REDQ A
Sbjct: 177 -SVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSA 235
Query: 241 SSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 300
+SS G+ VG T+D GKKKILLLKGKER+I H+ +S+
Sbjct: 236 TSSA---------IGIS-DVG---TADFGKKKILLLKGKERDISHL---------QSATS 273
Query: 301 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 360
++ + K RREAGG +IR ILLNNE R QS + Q QK+Q LN +NGK P P
Sbjct: 274 SGNSPASASKHNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP 333
Query: 361 TSSPNG--HVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
T++ +G +++N+ +G+ KR+SD++F++K LHG G+ SEKQEKR RNKDRPDR
Sbjct: 334 TNARSGSNDISSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRG 393
Query: 419 VWTPR-RSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG--- 474
VW PR RSD S + E S Q + LLSDSVE RGEMK+D+ +GS+T D+ SG
Sbjct: 394 VWAPRSRSDASVSQLEESSVPQSSHLLSDSVEAFRGEMKEDI-HGSRTGDVTTIVSGRNS 452
Query: 475 ----GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
GS RH GRR A ++ KDDG +N EGK SK RG A GG+EKQVW+QKSSSG
Sbjct: 453 SVENGSVRHVGRRGAGHVMKDDGSLNPNEGKPSK-RGVA--GGHEKQVWVQKSSSG 505
>gi|356507710|ref|XP_003522607.1| PREDICTED: uncharacterized protein LOC100801152 [Glycine max]
Length = 535
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 301/541 (55%), Positives = 376/541 (69%), Gaps = 34/541 (6%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
++TKVVIRHLPPSL+Q+DL HF RYNWF FRPG +S +K QR+SRAY++ K
Sbjct: 8 EKTKVVIRHLPPSLTQSDLFQHIDSHFASRYNWFSFRPGNNS----HKRQRHSRAYIDFK 63
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
P VFEFAE +GHVFVNE+GAQ K IVEYAPSQRVPKP ++KD REGTIFKDPDYLEF
Sbjct: 64 CPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIFKDPDYLEF 123
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGR 185
LK+IAKP E+LPSAEIQLERKE+E GA KET +VTPLMEY+RQKRA +SG Q S AV +
Sbjct: 124 LKLIAKPQEHLPSAEIQLERKESEQVGASKETPIVTPLMEYIRQKRAVDSGMQASSAVAK 183
Query: 186 VGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDK---STFTVVAKREDQPASS 242
V RRSRAA K S KRGSEKKKY+ KD+AK+A RK+ S F VV +R+DQ A S
Sbjct: 184 VCRRSRAALPGKPGSGNIKRGSEKKKYVQKDNAKSATRKESKNMSAFIVVPRRDDQFAES 243
Query: 243 SGKETSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVK 301
S K S +T+ GVEGS+ GIPLTS++GKKK LLLKGK+++IP +A + +Q S
Sbjct: 244 SIKGISDIKTLHGVEGSISGIPLTSESGKKKFLLLKGKQQDIPSATEATVKQQNVQS--G 301
Query: 302 NSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP--- 358
NS T KQ QRREA GRLIR ILLNNE RQ+QS TG Q K+Q L+ ENG+
Sbjct: 302 NSPISTPAKQNQRREASGRLIRSILLNNEARQSQSTTGT--QHKIQILSSENGQRPSRRF 359
Query: 359 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
G S N V+N+D+ + +G+++R+ D++F ++ LHG G+ S K EKRTRNKDRPDR
Sbjct: 360 GSRSGLNNQVSNHDAAQINSEGDSRRALDEKFIKRDLHGLGS-SAKTEKRTRNKDRPDRG 418
Query: 419 VWTP-RRSDVSQANGERLSSS--QPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG- 474
VWTP RRSDVS A + SSS QPTQ +S E GE+K+++ G++ + +A G
Sbjct: 419 VWTPLRRSDVSHAGNDYSSSSLAQPTQSNPESAE---GEVKENVPSGNRGGEFSASAGGH 475
Query: 475 --------GSHRHNGRRAATNITKDDGCINMI-EGKSSKRRGAAGSGGNEKQVWIQKSSS 525
GS R+ A+ + KDDG ++ I +GK SK+ + G +EKQVW+ KSSS
Sbjct: 476 GGNPSIENGSQRNFIHHGASYVVKDDGAVSSISKGKPSKK--SVGHSAHEKQVWVHKSSS 533
Query: 526 G 526
G
Sbjct: 534 G 534
>gi|356517820|ref|XP_003527584.1| PREDICTED: uncharacterized protein LOC100795376 [Glycine max]
Length = 529
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 300/539 (55%), Positives = 369/539 (68%), Gaps = 42/539 (7%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
++TKVVIRHLPPSLSQ+DL HF RYNWF FRPG +S + QR+SRAY++ K
Sbjct: 14 EKTKVVIRHLPPSLSQSDLSQHIDSHFASRYNWFSFRPGNNS----HTRQRHSRAYIDFK 69
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
P VFEFAE +GHVFVNE+GAQ K IVEYAPSQRVPKP ++KD REGTI+KDPDYLEF
Sbjct: 70 CPDDVFEFAEFFDGHVFVNERGAQHKVIVEYAPSQRVPKPSAKKDGREGTIYKDPDYLEF 129
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGR 185
LK+IAKP E+LPSAE+QLERKEAE +GA KET +VTPLME+VRQ+RA +SG Q S AV +
Sbjct: 130 LKLIAKPQEHLPSAEVQLERKEAEQAGANKETRIVTPLMEFVRQRRAVDSGMQASSAVAK 189
Query: 186 VGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARR---KDKSTFTVVAKREDQPASS 242
V RRSRAA K S TKRGSEKKKY+ KD+AK R KDKS F VV +R++Q A
Sbjct: 190 VSRRSRAALPGKPGSGNTKRGSEKKKYVQKDNAKGVARKESKDKSAFVVVPRRDNQSA-- 247
Query: 243 SGKETSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVK 301
E++ G+EG GI LTSD+GKKKILLLKGK+REIP + + +Q S
Sbjct: 248 --------ESMHGIEGPFSGISLTSDSGKKKILLLKGKQREIPSAIEGTVKQQNIQS--G 297
Query: 302 NSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP--- 358
NS KQ QRREA GRLIR ILLNNE+RQ+ S TG Q K+Q L+ ENGK P
Sbjct: 298 NSPISAPAKQNQRREASGRLIRSILLNNESRQSLSTTGA--QHKIQILSSENGKRPPRTF 355
Query: 359 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
G S N V+NND+ + +G++K + D +F ++ LHG G+ EK EKRTRNKDRPDR
Sbjct: 356 GSRSGLNDQVSNNDAAQVNSEGDSKMALDKKFVKRDLHGLGS-GEKTEKRTRNKDRPDRG 414
Query: 419 VWTP-RRSDVSQANGERLSSS--QPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG- 474
VWTP RRSDVS A + SSS QPTQ +S E GE+K+++ G++ + +A G
Sbjct: 415 VWTPLRRSDVSNAGNDHSSSSLAQPTQSNPESAE---GEVKENVPSGNRGGEFSASAGGR 471
Query: 475 -------GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
S R+ RR A+ I KDDG +++ EGK SK+ + G +EKQVW+QKSSSG
Sbjct: 472 GNPSIENDSQRNFTRRGASYIVKDDGAVSISEGKPSKK--SVGHSAHEKQVWVQKSSSG 528
>gi|357455505|ref|XP_003598033.1| B3 domain-containing protein [Medicago truncatula]
gi|355487081|gb|AES68284.1| B3 domain-containing protein [Medicago truncatula]
Length = 1203
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/537 (52%), Positives = 359/537 (66%), Gaps = 37/537 (6%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
RTKVVIRHLPPSL+++DL+ + F+ RY+WF FR G +S Y++Q+Y+RAY++
Sbjct: 9 RTKVVIRHLPPSLTESDLIQHIDNRFSSRYHWFVFRSGNTS----YRNQKYARAYLDFNS 64
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 126
P VFEFAE NGHVFVNEKG Q KA+VEYAPSQRVPK ++KD REGTI+KDPDYLEFL
Sbjct: 65 PDDVFEFAEFFNGHVFVNEKGVQHKAVVEYAPSQRVPKLSTKKDGREGTIYKDPDYLEFL 124
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRV 186
K+I+KP E+LPSAEIQLERKEAE +GA KE +VTPLM Y+RQKRA +SG S A RV
Sbjct: 125 KLISKPQEHLPSAEIQLERKEAEQAGASKEAPIVTPLMAYIRQKRAVDSGPLVSSAATRV 184
Query: 187 GRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARR---KDKSTFTVVAKREDQPASSS 243
GRR+RA K + T+RGSEKKKY+ KD+ KNA R KDKS FTVV +RED + SS
Sbjct: 185 GRRARAMQG-KPGPSNTRRGSEKKKYVQKDNVKNANRKDSKDKSAFTVVPRREDHSSESS 243
Query: 244 GK---ETSASETI-----CGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQ 294
K E +S I G+EGS+ GIPLTSD+GKKKILLLKGK+REIP + ++ +Q
Sbjct: 244 IKGVYEIDSSHVIDEFAVHGIEGSISGIPLTSDSGKKKILLLKGKQREIPKATEGMVKQQ 303
Query: 295 RESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENG 354
S N PT KQ QRREAGGRLIR ILLNNE+RQ+QS + Q K+Q L ENG
Sbjct: 304 NAQS--ANLPIPTTAKQNQRREAGGRLIRSILLNNESRQSQSTSTA--QHKIQILTSENG 359
Query: 355 KPLPGPTSSPNG---HVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRN 411
+ P P S +G V+++D+ + +G +KR D++F R+ HGSG + +K E+RTRN
Sbjct: 360 RRPPRPFGSRSGLSDQVSSHDAGHVNSEGESKRDLDEKFVRRDFHGSG-IGDKTERRTRN 418
Query: 412 KDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAA 470
KDRPDR VW P RRSD S ++ E SSS S+ E GE+K++ G+++ + +A
Sbjct: 419 KDRPDRGVWAPLRRSDSSHSSNELSSSSLAQSAPSNP-ESVEGEVKENAYSGNRSGEFSA 477
Query: 471 PTSG--------GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVW 519
G GS R RR A I KDDG ++ EGK SK+ G+ +E W
Sbjct: 478 SAGGRSSPSVENGSQRIFTRRGAPYIVKDDGAVSSSEGKLSKK--GVGNSTHEFAYW 532
>gi|30692963|ref|NP_174660.2| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|10092444|gb|AAG12847.1|AC079286_4 unknown protein; 6107-8789 [Arabidopsis thaliana]
gi|22136008|gb|AAM91586.1| unknown protein [Arabidopsis thaliana]
gi|23197808|gb|AAN15431.1| unknown protein [Arabidopsis thaliana]
gi|332193532|gb|AEE31653.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 482
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 265/533 (49%), Positives = 336/533 (63%), Gaps = 59/533 (11%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSS YK+Q+YSRA
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSS----YKNQKYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
YV K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDP
Sbjct: 57 YVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
DYLEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q
Sbjct: 117 DYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGL 176
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QP 239
+ R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D +
Sbjct: 177 SDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDYRQ 234
Query: 240 ASSSGKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 298
++SSGKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +++
Sbjct: 235 SNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTN 294
Query: 299 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP 358
+NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K
Sbjct: 295 LSRNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPS 351
Query: 359 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
P NT+ A K H SG +SEKQE+RTRNKDRPDRV
Sbjct: 352 RP-------------------ANTR-------AGKDYHTSGTISEKQERRTRNKDRPDRV 385
Query: 419 VWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---- 474
+W PRR S QP ++ GE+KD M + ++ ++ + G
Sbjct: 386 MWAPRRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLE 430
Query: 475 -GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
GS RH+ RR K++ I EGK+S+R G +EKQ+WIQK SSG
Sbjct: 431 NGSARHSSRRVGGRNRKEEVVIG--EGKTSRRGSGGGPSSHEKQMWIQKPSSG 481
>gi|297739512|emb|CBI29694.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 273/542 (50%), Positives = 350/542 (64%), Gaps = 40/542 (7%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKVV+RHLPP++S+ L F RY FRPGK+S K Q YSRA
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNS----QKRQSYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP
Sbjct: 57 YLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+Y+EF++++AKP ENLPSAEIQLER+EAE +GA K+T +VTPLM++VRQKRAA+ ++ S
Sbjct: 117 EYMEFVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRRS 176
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G++ RR+ +S+ S ++KRGSEK++ Y+L+D+AK+ KDKSTF +V KR
Sbjct: 177 LSNGKLSRRASGSSSGNPSLGSSKRGSEKRRLSTTMYVLRDTAKSTSAKDKSTFILVPKR 236
Query: 236 EDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQR 295
+DQ S +A +E G+ D GKKK+LLLKGKEREI H L +Q
Sbjct: 237 DDQLLSDKSVNLAAGGGAEALEEESGVSGAVDAGKKKVLLLKGKEREISH----HLLQQN 292
Query: 296 ESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGK 355
+SPVKN PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K
Sbjct: 293 VTSPVKNILGANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQTEQQSQASNLEKEK 351
Query: 356 PLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRP 415
P P P+ + + + T + DD+ +H VSEKQ+KRTRNKDRP
Sbjct: 352 RPPRP---PHIQLASKE---------TNGAQDDKVVGNDVH--SFVSEKQDKRTRNKDRP 397
Query: 416 DRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG 474
DR VWTP RRSD S A+ E LSSS SD E + GEM+ DMS +++ ++ A SG
Sbjct: 398 DRGVWTPLRRSDGSHASDESLSSSASQPTSSDFPEGSHGEMRSDMS-NARSGEVKALGSG 456
Query: 475 ---------GSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSS 524
GSH+H+GRR T+ KD DG + EGK SKR A G G +EKQVW+QKSS
Sbjct: 457 RGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHEKQVWVQKSS 516
Query: 525 SG 526
SG
Sbjct: 517 SG 518
>gi|186488168|ref|NP_001117406.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
gi|332193533|gb|AEE31654.1| Smg-4/UPF3-like protein [Arabidopsis thaliana]
Length = 484
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 264/533 (49%), Positives = 335/533 (62%), Gaps = 57/533 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKS YK+Q+YSRA
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRL--GYKNQKYSRA 58
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
YV K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDP
Sbjct: 59 YVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDP 118
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
DYLEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q
Sbjct: 119 DYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGL 178
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QP 239
+ R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D +
Sbjct: 179 SDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDYRQ 236
Query: 240 ASSSGKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 298
++SSGKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +++
Sbjct: 237 SNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHIDTN 296
Query: 299 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP 358
+NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K
Sbjct: 297 LSRNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKRPS 353
Query: 359 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
P NT+ A K H SG +SEKQE+RTRNKDRPDRV
Sbjct: 354 RP-------------------ANTR-------AGKDYHTSGTISEKQERRTRNKDRPDRV 387
Query: 419 VWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---- 474
+W PRR S QP ++ GE+KD M + ++ ++ + G
Sbjct: 388 MWAPRRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLE 432
Query: 475 -GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
GS RH+ RR K++ I EGK+S+R G +EKQ+WIQK SSG
Sbjct: 433 NGSARHSSRRVGGRNRKEEVVIG--EGKTSRRGSGGGPSSHEKQMWIQKPSSG 483
>gi|297846376|ref|XP_002891069.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
gi|297336911|gb|EFH67328.1| ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 268/533 (50%), Positives = 337/533 (63%), Gaps = 55/533 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSS YK+Q+YSRA
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSS----YKNQKYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
YV K P V+EFA NGHVFVNEKGAQFKA+VEYAPSQRVPKP +KD REG+I KDP
Sbjct: 57 YVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAVVEYAPSQRVPKPCDKKDPREGSISKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
DYLEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G+Q
Sbjct: 117 DYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGSQGL 176
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED-QP 239
V R GRR+R SA+K SS +KR SEKKKY+ KDS+KN R K+T V + + D +
Sbjct: 177 SDVRRGGRRARVVSANKPSSRPSKRNSEKKKYVEKDSSKNVPR--KTTADVSSSKPDYRQ 234
Query: 240 ASSSGKETSASETICGVEGSV-GIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESS 298
++SSG ET T ++ S+ GI LT D+GKKKILLLK K+R+ P ++ E+
Sbjct: 235 SNSSGNETGNKSTAPVIDSSLPGIALTMDSGKKKILLLKSKDRDNSDNPPPQPEQHIETI 294
Query: 299 PVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLP 358
NS T +Q Q+ + GGRLI+ IL+ +++R +QS T VQP+Q+++ EN K P
Sbjct: 295 LSGNS---TASRQNQKSDVGGRLIKGILMKSDSRPSQSSTFVQPEQRVEPSEAENYKRPP 351
Query: 359 GPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRV 418
P NT+ A K H SG +SEKQE+RTRNKDRPDRV
Sbjct: 352 RP-------------------ANTR-------AGKDYHASGTISEKQERRTRNKDRPDRV 385
Query: 419 VWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---- 474
VW P R D G +S QP ++ GE+KD M + ++ ++ + G
Sbjct: 386 VWAPLRRD-----GSNISEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHTLE 434
Query: 475 -GSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
GS RH+ RR K++ + EGK+S+R G G EKQ+WIQK S G
Sbjct: 435 NGSARHSSRRVGGRNRKEE--LMTGEGKTSRRGGGGGPNSQEKQMWIQKPSLG 485
>gi|224146308|ref|XP_002325958.1| predicted protein [Populus trichocarpa]
gi|222862833|gb|EEF00340.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 265/540 (49%), Positives = 328/540 (60%), Gaps = 35/540 (6%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
KEPL RTKVVIRHLPPSLSQ++L + F F RYNWF FRPG SS +K QRYSRAY
Sbjct: 5 KEPLGRTKVVIRHLPPSLSQSNLFSQFDHLFCHRYNWFRFRPGNSS----HKSQRYSRAY 60
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPD 121
++ K P V EFA +GHVFVNEKG+QFKAIVEYAP Q VPK KDSREGTI+ DPD
Sbjct: 61 IDFKNPEDVLEFAGFFHGHVFVNEKGSQFKAIVEYAPCQHVPKSCPHKDSREGTIYTDPD 120
Query: 122 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESL 181
YLEFLK+IAKPA N PSAEI+LERKEAE S A K + TPLME+VR+KR A+ G Q S
Sbjct: 121 YLEFLKLIAKPARNPPSAEIKLERKEAEESEAVKGAPISTPLMEFVRKKR-ADKGVQGS- 178
Query: 182 AVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPAS 241
AV + +R+ +AS + + S+ K+GS KK+YILKDS KN+ K KS + K+E P +
Sbjct: 179 AVVKNRKRAGSASLTNSGSSNAKQGSGKKRYILKDSTKNSNWKGKSIIIMARKQEGLPTT 238
Query: 242 SSGKETSASETICGVEGSVG-IPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 300
S KE S E+I GVEGS I L +++G+K LLL GK+REI + L + +S
Sbjct: 239 SGRKEISEVESISGVEGSASKISLDAESGRKINLLLDGKKREISLESEGPLHQLGLTSNF 298
Query: 301 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 360
+S S T KQ QR EA RLI+ IL + ++K QNL EN K P
Sbjct: 299 GSSVS-TAAKQYQRHEASERLIKSILPSK---------AASAKKKFQNLEVENDKQPIQP 348
Query: 361 TSSP---NGHVTNNDSPIFSF-DGNTKRSSDDRFARKVLHGSGAVSEKQEKR---TRNKD 413
++ +GHV + P+ S D + K SS D+ +K H G+ EKQ+KR TRNKD
Sbjct: 349 KTTQVGLSGHVPYKE-PLASMSDNDVKSSSYDKLVKKDQHDPGSHFEKQQKREKHTRNKD 407
Query: 414 RPDRVVWTPRRSDVS-QANGERLSSS-QPTQLLSDSVEVTRGEMKDDMSY-----GSKTV 466
RP R VWTP R+ S AN E L+SS +++ SDSV T GE+KD Y GS
Sbjct: 408 RPCRGVWTPVRNCPSKHANAEHLTSSILQSEVHSDSVRETHGEVKDGTQYRDHNQGSAGS 467
Query: 467 DIAAPTSGG---SHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKS 523
+ S S R GRR + D + GK SK+ G AG EKQVW+QKS
Sbjct: 468 PSGSNNSSAENVSRRDFGRRVTAHNIMLDSSPSATGGKFSKKGGHAGYTAQEKQVWVQKS 527
>gi|224129726|ref|XP_002328787.1| predicted protein [Populus trichocarpa]
gi|222839085|gb|EEE77436.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 263/542 (48%), Positives = 344/542 (63%), Gaps = 49/542 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+TKVV+RHLPP +SQ + F+ RYNW +RPG +S KHQ YSRAY++ K+
Sbjct: 9 KTKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNS----QKHQSYSRAYIDFKR 64
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 126
P V +FAE NGH+FVNEKG QFKAIVEY+PSQRVPK +S+KD REGTI KDP+YLEFL
Sbjct: 65 PEDVIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFL 124
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRV 186
++IAKP ENLPSAEIQLER+EAE +GA K+ +VTPLM++VRQKR A++G + L+ G++
Sbjct: 125 ELIAKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRILSNGKL 184
Query: 187 GRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKREDQPAS 241
R RA + SS++ KRGSEKK+ Y+L+D+AK+ KDKST+ V KR+DQ S
Sbjct: 185 SR--RAGGSGSPSSSSLKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQLS 242
Query: 242 SSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVK 301
++ S S T + SV + +D+GKKKILLLKGKE+EI V + +Q SS +
Sbjct: 243 NAVTLGSGSGTAVLEDESV-VSGITDSGKKKILLLKGKEKEISLVTGTMSQQQSISSSDR 301
Query: 302 NSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPT 361
N S T K QRRE GR+IR ILLN ++R +S +GV + +MQ N E K P P
Sbjct: 302 NIISSTALKS-QRRETSGRMIRSILLNKDSRHIRS-SGVHSEPQMQTSNLEKEKRPPRPP 359
Query: 362 SSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWT 421
+ G N +P DD+ LH G +EKQEKRTRNKDRPDR VWT
Sbjct: 360 HAQLGLKDANGTP------------DDKVVGNDLH--GFPNEKQEKRTRNKDRPDRGVWT 405
Query: 422 P-RRSDVSQANGERL--SSSQPTQLLSDSVEVTRGEMK-DDMSYGSKTVDIAAPTSG--- 474
P RRSD S A+ E L S+SQ TQ + DS + G++K D ++ S V + G
Sbjct: 406 PLRRSDGSYASDESLLSSASQSTQSVFDSSQGNHGDVKVDSLNLRSGEVKVLGSGRGNHS 465
Query: 475 ----GSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNE-------KQVWIQK 522
GSH+H GRR ++I +D DG +E K+ KR G++G G +E KQVW+QK
Sbjct: 466 SLDNGSHKHFGRRGPSHIVRDADGS--TVEAKTPKRGGSSGYGSHEVCSLDSQKQVWVQK 523
Query: 523 SS 524
S+
Sbjct: 524 ST 525
>gi|10086477|gb|AAG12537.1|AC015446_18 Unknown protein [Arabidopsis thaliana]
Length = 525
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 249/504 (49%), Positives = 317/504 (62%), Gaps = 59/504 (11%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MKEPLQ+ KVV+RHLPPSLSQ+DLL+ F DRYNW FRPGKSS YK+Q+YSRA
Sbjct: 1 MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSS----YKNQKYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
YV K P V+EFA NGHVFVNEKGAQFKAIVEYAPSQRVPKP +KD REG+I KDP
Sbjct: 57 YVSFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
DYLEFLKVIA+P ENLPSAEIQLER+EAE SGA K +VTPLME++RQKRA G Q+
Sbjct: 117 DYLEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQQQ 176
Query: 181 --LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKRED- 237
+ R GRR+R SA+K S +KR SEKKKY+ K+S+KN R K+T V + + D
Sbjct: 177 GLSDIRRGGRRTRVVSANKPSPRPSKRNSEKKKYVEKESSKNVPR--KTTADVSSSKPDY 234
Query: 238 QPASSSGKETSASETICGVEGS-VGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRE 296
+ ++SSGKE +ET ++ S GI LT D+GKKKILLL+ K+R+ P P ++ +
Sbjct: 235 RQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQHID 294
Query: 297 SSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP 356
++ +NS T +Q Q+ + GGRLI+ ILL N++R +QS T VQ +Q+++ EN K
Sbjct: 295 TNLSRNS---TDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYKR 351
Query: 357 LPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPD 416
P NT+ A K H SG +SEKQE+RTRNKDRPD
Sbjct: 352 PSRP-------------------ANTR-------AGKDYHTSGTISEKQERRTRNKDRPD 385
Query: 417 RVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG-- 474
RV+W PRR S QP ++ GE+KD M + ++ ++ + G
Sbjct: 386 RVMWAPRRDG---------SEDQPLSSAGNN-----GEVKDRM-FSQRSGEVVNSSGGHT 430
Query: 475 ---GSHRHNGRRAATNITKDDGCI 495
GS RH+ RR K++ I
Sbjct: 431 LENGSARHSSRRVGGRNRKEEVVI 454
>gi|255570968|ref|XP_002526435.1| conserved hypothetical protein [Ricinus communis]
gi|223534215|gb|EEF35930.1| conserved hypothetical protein [Ricinus communis]
Length = 472
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 251/548 (45%), Positives = 317/548 (57%), Gaps = 110/548 (20%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
++TKVV+RHLPP++SQ L F+ RYNW FRPGKSS KHQ YSRAY++ K
Sbjct: 7 EKTKVVVRHLPPTISQGSFLEQIDVVFSGRYNWVSFRPGKSS----QKHQSYSRAYIDFK 62
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
+P V EFAE NGH+FVNEKG QF+AIVEYAPSQ VPK +S+KD REGTI KDP YLEF
Sbjct: 63 RPEDVIEFAEFFNGHLFVNEKGTQFRAIVEYAPSQHVPKQWSKKDGREGTIVKDPAYLEF 122
Query: 126 LKVIAKPAENLPSAEIQL-ERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 184
L++I+KPAENLPSAEIQL R+ + A K+ +VTPLM++VRQKRAA++G+
Sbjct: 123 LELISKPAENLPSAEIQLERREAERAASAAKDAPIVTPLMDFVRQKRAAKTGS------- 175
Query: 185 RVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQP----- 239
+Y+L+DSAK+ KDKST+ +V KR+DQ
Sbjct: 176 --------------------------RYVLRDSAKSTSGKDKSTYLLVPKRDDQQFSDKS 209
Query: 240 ---ASSSGKETSASET----ICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLD 292
AS+SG E E+ +C + I+ L G +
Sbjct: 210 TPFASASGTEVLEDESELYHLCLL----------------IVQLSGG-----------MS 242
Query: 293 KQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQE 352
KQ +S KN S + KQ QRRE+ GR+IR ILLN ++RQ QS +G Q +Q++Q+ N E
Sbjct: 243 KQNAASFDKNVTSSAI-KQSQRRESSGRIIRSILLNKDSRQNQS-SGFQSEQQIQSSNLE 300
Query: 353 NGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNK 412
K LP P HV + D N SSDD+F LHG EKQEKRTRNK
Sbjct: 301 KEKRLPRPA-----HVQ-----LVLKDVNG--SSDDKFVGNDLHGFSG--EKQEKRTRNK 346
Query: 413 DRPDRVVWTP-RRSDVSQA--NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIA 469
DRPDRVVWTP RRSD S A S+SQ T DS + G++K D S S++ D+
Sbjct: 347 DRPDRVVWTPLRRSDGSYASDESLSSSASQSTHTGQDSSQGNLGDIKVDSS-NSRSGDVK 405
Query: 470 APTSG---------GSHRHNGRRAATNITKD-DGCINMIEGKSSKR-RGAAGSGGNEKQV 518
SG GSH+H GRR ++ +D DG +EGK SKR GA+G G +EKQV
Sbjct: 406 TLGSGRSSHSSLDNGSHKHFGRRGPSHTVRDADGS--SLEGKPSKRGGGASGYGSHEKQV 463
Query: 519 WIQKSSSG 526
W+QKSSSG
Sbjct: 464 WVQKSSSG 471
>gi|356543385|ref|XP_003540141.1| PREDICTED: uncharacterized protein LOC100798866 [Glycine max]
Length = 510
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 244/553 (44%), Positives = 321/553 (58%), Gaps = 71/553 (12%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK L RTKVV+RHLPPS+S+ LL+ F RYNW FRPGK S KH +SRA
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLSQIDAAFAGRYNWLSFRPGK----ISQKHMSFSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V FAE NGHVFVN KG+QFK IVEYAPSQRVP+ +S+KD R+GTI+KD
Sbjct: 57 YIDFKRPEDVILFAEFFNGHVFVNVKGSQFKVIVEYAPSQRVPRQWSKKDLRDGTIYKDS 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+++AKP ENLPSAEIQLE++EAE S P ++TPLM++VRQKRAA+ G +
Sbjct: 117 EYLEFLELLAKPVENLPSAEIQLEKREAERSDIP----IITPLMDFVRQKRAAK-GPRRP 171
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V RR+ +S SS T++RGS KK+ Y+ +D K++ KDKS++T+V K+
Sbjct: 172 LSNGKVSRRAGTSSNGGPSSATSRRGSGKKRVSATMYVARDPGKSSTIKDKSSYTLVPKQ 231
Query: 236 EDQP--------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVP 287
+DQ ASS G +T + G D GKKK+LLLKGKEREI V
Sbjct: 232 DDQHLPNKASNMASSDGNQTLDENGVSG---------NHDAGKKKVLLLKGKEREIITVS 282
Query: 288 DALLDKQRESSPVKNSA----SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQ 343
D LD + V +SA TV KQ QR E GR+IR IL E Q+QS + +
Sbjct: 283 D--LDSMSQHHNVTSSAKTVVGSTVLKQSQRHEGSGRIIRSILSKKELHQSQSSRALS-E 339
Query: 344 QKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSE 403
QK+ N E K P P +N +P +++ +H S SE
Sbjct: 340 QKILTSNLEKEKQPPRPLHVQLILKGSNGTP------------ENKIG---VHDSHVSSE 384
Query: 404 KQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDM---- 459
+QE+ R+KDRPDR VWT R NG +S S P D +E ++ ++K DM
Sbjct: 385 RQERHVRHKDRPDRGVWTSR------FNGADVSFSSPASSQVDPLEGSQADLKHDMPNAR 438
Query: 460 -----SYGSKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGG 513
S+GS V + + G ++H GRR + KD DG EGK +R + G
Sbjct: 439 SVEVKSFGS--VRTSHSSENGFNKHFGRRGPSYGVKDVDGYSVSSEGKHPRRSSTSAYGS 496
Query: 514 NEKQVWIQKSSSG 526
NEKQVW+QK+SSG
Sbjct: 497 NEKQVWVQKASSG 509
>gi|116309808|emb|CAH66847.1| H0525C06.10 [Oryza sativa Indica Group]
gi|218194905|gb|EEC77332.1| hypothetical protein OsI_16007 [Oryza sativa Indica Group]
gi|222628924|gb|EEE61056.1| hypothetical protein OsJ_14914 [Oryza sativa Japonica Group]
Length = 507
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 231/541 (42%), Positives = 317/541 (58%), Gaps = 57/541 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNAS----QKNHRYSRL 63
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+VPK ++KD+R+GTI KDP
Sbjct: 64 YLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVPKSNTKKDARQGTIMKDP 123
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ S
Sbjct: 124 EYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS 183
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK------YILKDSAKNARRKDKSTFTVVAK 234
R+ R + A +S + +KRGSEK++ Y+L+++A K+K T+ +V K
Sbjct: 184 -GSSRLSR--KVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPK 235
Query: 235 REDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQ 294
R++ + +E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q
Sbjct: 236 RDEH----AQREKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQ 285
Query: 295 RESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENG 354
+ +P+KN+A + +Q R E GR+I+ IL N E R V Q Q+ + E
Sbjct: 286 QSGTPMKNAAQ-SSSRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKR 341
Query: 355 KP-LPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKD 413
P +P P S V N K DD+ + LHGSG +SEK E+ RN+D
Sbjct: 342 PPRIPNPRSVVKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRD 390
Query: 414 RPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI----- 468
RPDR VW PRR D S + G SSS+ + + S E + +G + +D
Sbjct: 391 RPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGE---NFCQQADGHGERKIDPRGHGG 447
Query: 469 --AAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSS 525
P G HRH RR K+ + + +GK SK R +A G +E+QVW+QKSSS
Sbjct: 448 IRGGPVENG-HRHANRRGPPRGLKEMEISASTSDGKPSK-RASANYGAHERQVWVQKSSS 505
Query: 526 G 526
Sbjct: 506 A 506
>gi|356560129|ref|XP_003548348.1| PREDICTED: uncharacterized protein LOC100799816 [Glycine max]
Length = 508
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 243/545 (44%), Positives = 318/545 (58%), Gaps = 57/545 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK L RTKVV+RHLPPS+S+ LLA F RYNW FRPGK S KH YSRA
Sbjct: 1 MKGALDRTKVVLRHLPPSISEAALLAQIDAAFAGRYNWLSFRPGK----ISQKHISYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V FAE NGHVFVNEKG+QFK IVEYAPSQRVP+ +S+KD R+GTI+KD
Sbjct: 57 YIDFKRPEDVILFAEFFNGHVFVNEKGSQFKVIVEYAPSQRVPRQWSKKDGRDGTIYKDS 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+++AKP ENLPSAEIQLE++EAE S P ++TPLM++VRQKRAA+ G +
Sbjct: 117 EYLEFLELLAKPVENLPSAEIQLEKREAERSDIP----IITPLMDFVRQKRAAK-GPRRL 171
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V +R+ +S SS T++RGS KK+ Y+ +D KN+ KDKS T+V K+
Sbjct: 172 LSNGKVSQRAGTSSNGSPSSVTSRRGSGKKRVSATMYVARDPGKNSTIKDKS--TLVPKQ 229
Query: 236 EDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQR 295
DQ S ++S+ ++ + G+ D GKKK+LLLKGKEREI V D LD
Sbjct: 230 GDQHLSDKASNMASSDANLTLDEN-GVSGNHDAGKKKVLLLKGKEREIITVSD--LDSMS 286
Query: 296 ESSPVKNSA----SPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQ 351
+ V +SA TV KQ QR E GR+IR IL E RQ+Q + QQ +Q N
Sbjct: 287 QHHNVTSSAKMIVGSTVLKQSQRHEGSGRIIRSILSKKELRQSQYSRALSEQQ-IQTSNL 345
Query: 352 ENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRN 411
E K P P +N +P +++ +H S SE+QE+ R+
Sbjct: 346 EKEKQPPRPLHVQLILKGSNGTP------------ENKIG---VHDSHVSSERQERHVRH 390
Query: 412 KDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDM---------SYG 462
KDRPDR VWT R +NG S S D +E + ++K D S G
Sbjct: 391 KDRPDRGVWTSR------SNGADDSFSSSASSQVDPLEGSHADLKHDTPNARSGEVKSLG 444
Query: 463 SKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQ 521
S V + + G ++H GRR ++ KD DG EGK +R + G NEKQVW+Q
Sbjct: 445 S--VRTSHSSENGFNKHFGRRGPSHGVKDVDGYSVSSEGKHPRRSSTSAYGSNEKQVWVQ 502
Query: 522 KSSSG 526
K+SSG
Sbjct: 503 KASSG 507
>gi|115458546|ref|NP_001052873.1| Os04g0440100 [Oryza sativa Japonica Group]
gi|113564444|dbj|BAF14787.1| Os04g0440100 [Oryza sativa Japonica Group]
Length = 507
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 230/541 (42%), Positives = 316/541 (58%), Gaps = 57/541 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNAS----QKNHRYSRL 63
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+V K ++KD+R+GTI KDP
Sbjct: 64 YLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDP 123
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ S
Sbjct: 124 EYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRS 183
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK------YILKDSAKNARRKDKSTFTVVAK 234
R+ R + A +S + +KRGSEK++ Y+L+++A K+K T+ +V K
Sbjct: 184 -GSSRLSR--KVAGVVTSSPSPSKRGSEKRRTSASTQYVLRENA-----KEKPTYILVPK 235
Query: 235 REDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQ 294
R++ + +E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q
Sbjct: 236 RDEH----AQREKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQ 285
Query: 295 RESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENG 354
+ +P+KN+A + +Q R E GR+I+ IL N E R V Q Q+ + E
Sbjct: 286 QSGTPMKNAAQ-SSSRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKR 341
Query: 355 KP-LPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKD 413
P +P P S V N K DD+ + LHGSG +SEK E+ RN+D
Sbjct: 342 PPRIPNPRSVVKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRD 390
Query: 414 RPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI----- 468
RPDR VW PRR D S + G SSS+ + + S E + +G + +D
Sbjct: 391 RPDRGVWAPRRYDKSASGGTHSSSSEFSPMQQHSGE---NFCQQADGHGERKIDPRGHGG 447
Query: 469 --AAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSS 525
P G HRH RR K+ + + +GK SK R +A G +E+QVW+QKSSS
Sbjct: 448 IRGGPVENG-HRHANRRGPPRGLKEMEISASTSDGKPSK-RASANYGAHERQVWVQKSSS 505
Query: 526 G 526
Sbjct: 506 A 506
>gi|357163670|ref|XP_003579808.1| PREDICTED: uncharacterized protein LOC100844832 [Brachypodium
distachyon]
Length = 506
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 232/545 (42%), Positives = 309/545 (56%), Gaps = 59/545 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP++ Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 1 MKDPPPRTKVVLRRLPPAIGQQAVVDQVDARFAGRYDWACFRPGNAS----QKNHRYSRL 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ LK V EFAE NGH+FVNEKGAQFKA+VEYAPSQ+VPK +KD+R+GTI KD
Sbjct: 57 YLNLKSSEDVVEFAEFFNGHIFVNEKGAQFKALVEYAPSQQVPKSTIKKDARQGTITKDL 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL++I+KP E+LPSAEIQLERKEAE + A KE VVTPLM Y+RQ+RAA++ AQ S
Sbjct: 117 EYLEFLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMAYIRQQRAAKNMAQRS 176
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
A R+GR+ TS+++ KR SE+++ Y+L+D+ K+K T+ +V KR
Sbjct: 177 -ANSRLGRK---VVGVVTSTSSPKRASERRRASTSTYVLRDA------KEKPTYILVPKR 226
Query: 236 EDQP------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDA 289
ED A +SG TS+ + GS + D+ K KI+LLKG+ R V D+
Sbjct: 227 EDHSQREKIIAGTSGDATSSRPS-----GSAQV----DSKKDKIVLLKGRARTDSTVSDS 277
Query: 290 LLDKQRESSPVKNSAS--PTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQ 347
Q PV +S + P+ +Q QR EA GR+I+ IL N E R Q +Q+
Sbjct: 278 STQHQ----PVASSRNTLPSGSRQDQRLEASGRIIKTILSNKEGRH---AVASQHEQEGH 330
Query: 348 NLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEK 407
+N E K P PN D + + K DD+ LHGSG +SEK E+
Sbjct: 331 IINAEKDK---RPPRFPNSRSIVKDQTV---ENAEKSHYDDKHNH--LHGSGPISEKIER 382
Query: 408 RTRNKDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVD 467
RN+DRPDR VW PRR D S G +SS L+ + + + D +G + ++
Sbjct: 383 HARNRDRPDRGVWAPRRYDKSAPGGGTQASSFDFPLMQSHSGDSFSQPQAD-GHGERKIE 441
Query: 468 IAAPTSGGSHRHNGRRAATNITKDDGCINM------IEGKSSKRRGAAGSGGNEKQVWIQ 521
P + NG R A G M +GK SK RG+A G E+QVW+Q
Sbjct: 442 TRGPGTRTGPIENGNRHANRRGPPRGSKEMEVSAVTADGKPSK-RGSASYGAQERQVWVQ 500
Query: 522 KSSSG 526
KSSSG
Sbjct: 501 KSSSG 505
>gi|414587118|tpg|DAA37689.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 500
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 232/541 (42%), Positives = 306/541 (56%), Gaps = 57/541 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNAS----QKNHRYSRL 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE+ NGH+FVNEKGAQFKA VEYAPSQ+VPK +KD REGT+ KDP
Sbjct: 57 YLNFKHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 117 EYLEFLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ-- 174
Query: 181 LAVGRVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKRE 236
R G R SR + TSS++ KR EK++ Y+++DS K+K T+ +V KRE
Sbjct: 175 ----RPGSRLSRKVAGVVTSSSSPKRSFEKRRSSTYVVRDSI-----KEKPTYIMVPKRE 225
Query: 237 DQPASSSGKETSASETICGVEG--SVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQ 294
+ T + + G G + G S KI++LKG+ R + PD Q
Sbjct: 226 EH--------TQREKIVSGNSGDATSGGASGSGQSSDKIVILKGRGRVDSNTPDGAA--Q 275
Query: 295 RESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENG 354
+ S+PVKN P+ + +R EA GR+I+ +L N E R S Q +Q+ Q N E
Sbjct: 276 QSSTPVKN-IPPSSSRLDKRSEANGRIIKTVLSNKEVR---SSNPSQHEQEGQMFNTEKD 331
Query: 355 KPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDR 414
K P + N D + N +RS D LH S + EK E+ RN+DR
Sbjct: 332 K---RPPRALNPRTIVKDQVV----ENAERSHFDE-KNNYLHSSAPIGEKVERHARNRDR 383
Query: 415 PDRVVWTPRRSDVSQANG-ERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDI----- 468
PDR VW PRR D S G SS +Q+ S S + ++ D +G + D
Sbjct: 384 PDRSVWAPRRYDKSPPGGVSHALSSDFSQMQSHSGDNV-SQLTD--GHGDRKTDTRGHGG 440
Query: 469 --AAPTSGGSHRHNGRRAATNITKDDGC-INMIEGKSSKRRGAAGSGGNEKQVWIQKSSS 525
P G HRH RR K+ ++ +GK+SK RG+A G +E+QVW+QKSSS
Sbjct: 441 SRGVPVENG-HRHANRRGTPCDPKETKISASVPDGKNSK-RGSASYGAHERQVWVQKSSS 498
Query: 526 G 526
G
Sbjct: 499 G 499
>gi|242075888|ref|XP_002447880.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
gi|241939063|gb|EES12208.1| hypothetical protein SORBIDRAFT_06g017380 [Sorghum bicolor]
Length = 504
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 241/546 (44%), Positives = 315/546 (57%), Gaps = 63/546 (11%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNAS----QKNHRYSRL 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K+P V EFAE+ NGHVFVNEKGAQFKA VEY+PSQ+VPK +KD REGTI KDP
Sbjct: 57 YLNFKRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYSPSQQVPKSNIKKDGREGTIMKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL++I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 117 EYLEFLELISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ-- 174
Query: 181 LAVGRVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKRE 236
R G R SR + TSS++ KR SEK++ Y+++DS K+K T+ +V KRE
Sbjct: 175 ----RPGSRLSRKVAGVVTSSSSPKRSSEKRRSSTYVVRDST-----KEKPTYIMVPKRE 225
Query: 237 DQP------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDAL 290
+ A +SG TS + G G + + KI++LKG+ R + PD
Sbjct: 226 EHTHREKAIAGNSGDATSGGTSGSGQAG--------EAKRDKIVILKGRGRVDSNTPDGA 277
Query: 291 LDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLN 350
Q+ S+PVK S P + QR EA GR+I+ IL N E R S Q +Q+ N
Sbjct: 278 T--QQSSTPVK-SVPPATSRLDQRPEASGRIIKTILSNKEIR---SSNPSQHEQEGHVFN 331
Query: 351 QENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTR 410
E K P + N D + N++RS D LHGS + EK E+ R
Sbjct: 332 TEKDK---RPPRAVNPRTIVKDQLV----ENSERSHFDEKTNH-LHGSAPIGEKVERHAR 383
Query: 411 NKDRPDRVVWTPRRSDVSQANGERLSSSQP-TQLLSDS------VEVTRGEMKDDM--SY 461
N+DRPDR VW PRR D S + G +SS Q+ S S + G+ K D
Sbjct: 384 NRDRPDRGVWAPRRYDKSTSGGGSHASSSDFPQIQSHSGDNVSQIADGHGDRKTDTRGHG 443
Query: 462 GSKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEKQVWI 520
GS+ V P G HRH RR K+ + ++ +GK+SK RG+A G +E+QVW+
Sbjct: 444 GSRGV----PVENG-HRHANRRGPPRGPKETEISASVPDGKNSK-RGSASYGAHERQVWV 497
Query: 521 QKSSSG 526
QKSSSG
Sbjct: 498 QKSSSG 503
>gi|326498059|dbj|BAJ94892.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 222/540 (41%), Positives = 309/540 (57%), Gaps = 47/540 (8%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP+++Q ++ F RY+W FRPG +S K+ RYSR
Sbjct: 30 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWARFRPGNAS----QKNHRYSRL 85
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE NGHVFVNEKGAQFKA+VEYAPSQ+VPK +KD+R+GTI KDP
Sbjct: 86 YLNFKSPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDP 145
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL++I+KP E+LPSAEIQLERKEAE + A KE V+TPLM YVRQ+RAA+S AQ S
Sbjct: 146 EYLEFLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVITPLMVYVRQQRAAKSMAQRS 205
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKK-------KYILKDSAKNARRKDKSTFTVVA 233
+ R SR + TSS++ + S ++ +Y+++D+A K+K T+ +
Sbjct: 206 VN----SRLSRKVAGVVTSSSSPSKRSSERRRASTSTQYVVRDNA-----KEKPTYILAP 256
Query: 234 KREDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDK 293
KR+D ++ T G GS + D + KI+LLKG+ R ++ D+ +
Sbjct: 257 KRDDHTQREKIIAGTSDATSGGPSGSAQV---IDGKRDKIVLLKGRARVDSNISDSSTPQ 313
Query: 294 QRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQEN 353
Q S P + P+ +Q QR EA GR+I+ IL N E R Q +Q+ ++ E
Sbjct: 314 Q--SVPPSRNTPPSTSRQDQRNEASGRIIKTILSNKEGRHA---IASQHEQEGHIISAEK 368
Query: 354 GKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKD 413
K P +PN T D + + + N DD+ +HGSG + EK E+ RN+D
Sbjct: 369 DK---RPPRAPNSRSTAKDQIVENAEKN---HYDDKHNH--VHGSGPIGEKIERHARNRD 420
Query: 414 RPDRVVWTPRRSDVSQA-NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPT 472
RPDR VW PRR D S + G + SSS+ + S S++ ++ +G + +D P
Sbjct: 421 RPDRGVWAPRRYDKSASGGGAQASSSEFPLMQSHSMDNVSQQVD---GHGERKIDTRGPG 477
Query: 473 SGG-----SHRHNGRRAATNITKDDGCINMI-EGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
G +RH RR K+ + +GK SK RG A +E+QVW+QKSSSG
Sbjct: 478 GRGGLVENGNRHPNRRGPPRGPKEVEIPPIASDGKPSK-RGPASYVAHERQVWVQKSSSG 536
>gi|413918386|gb|AFW58318.1| hypothetical protein ZEAMMB73_385077 [Zea mays]
Length = 503
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 232/544 (42%), Positives = 306/544 (56%), Gaps = 60/544 (11%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ R+SR
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDLRFAGRYDWACFRPGNAS----QKNHRHSRL 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K+P V EFAE+ NGHVFVNEKGAQFKA VEYAPSQ+VPK +KD REGTI KDP
Sbjct: 57 YLNFKRPEDVVEFAEVFNGHVFVNEKGAQFKAFVEYAPSQQVPKSTIKKDGREGTIMKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S
Sbjct: 117 EYLEFLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKS----- 171
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKRED 237
V R G R AS SS++ KR SEK++ Y+++D+ K+K T+ +V KRE+
Sbjct: 172 -MVHRPGSRLSRKLASVVSSSSPKRSSEKRRSSTYVVRDNT-----KEKPTYIMVPKREE 225
Query: 238 QP------ASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALL 291
A +SG TS G+ G ++ + KI++LKG+ R + P+
Sbjct: 226 HTQREKDVAGNSGDATSG--------GTSGSGQVAEFKRDKIVILKGRGRIDSNTPNGAT 277
Query: 292 DKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQ 351
Q S+P+KN P+ +Q QR EA G++I+ IL N E R S + +Q+ N
Sbjct: 278 --QHSSTPIKN-VPPSRSRQDQRLEASGKIIKTILSNKEAR---SSNPSEHEQEGHMFNT 331
Query: 352 ENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRN 411
E K P + N D + N +RS D A LHGS + EK E+ RN
Sbjct: 332 EKDK---RPPRAFNPRTIVKDQVV----ENAERSHFDEKANH-LHGSVPIGEKVERHARN 383
Query: 412 KDRPDRVVWTPRRSDVS-QANGERLSSSQPTQLLSDS------VEVTRGEMKDDM--SYG 462
+DRPDR VW RR D S A SSS+ Q+ S S + G+ K D G
Sbjct: 384 RDRPDRGVWAARRYDKSTSAGSSHPSSSEFPQMQSHSGDNILQLADGHGDRKTDTRGQGG 443
Query: 463 SKTVDIAAPTSGGSHRHNGRRAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQK 522
S+ V P G HRH RR K+ + + +RG+A G +E+QVW+QK
Sbjct: 444 SRGV----PVENG-HRHANRRGLPRGPKETEISASVPDAKNSKRGSASYGAHERQVWVQK 498
Query: 523 SSSG 526
SSSG
Sbjct: 499 SSSG 502
>gi|39545659|emb|CAE03133.3| OJ000114_01.14 [Oryza sativa Japonica Group]
Length = 455
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 202/483 (41%), Positives = 273/483 (56%), Gaps = 74/483 (15%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
+K+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 8 VKDPAHRTKVVLRRLPPAIAQQAVVEQVDARFGGRYDWSCFRPGNAS----QKNHRYSRL 63
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE+ NGHVFVNEKGAQFKA+VEYAPSQ+V K ++KD+R+GTI KDP
Sbjct: 64 YLNFKGPEDVVEFAEVFNGHVFVNEKGAQFKALVEYAPSQQVXKSNTKKDARQGTIMKDP 123
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KPAE+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ+
Sbjct: 124 EYLEFLESISKPAEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQQ- 182
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPA 240
Y+L+++AK +K T+ +V KR++
Sbjct: 183 -------------------------------YVLRENAK-----EKPTYILVPKRDEH-- 204
Query: 241 SSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 300
+ +E A T G+ GS + ++ K+KI+LLKG+ R + D + +Q+ +P+
Sbjct: 205 --AQREKDA--TSGGISGSAHV---AENKKEKIVLLKGRARVDSNTSD-VTSQQQSGTPM 256
Query: 301 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKP-LPG 359
KN+A + +Q R E GR+I+ IL N E R V Q Q+ + E P +P
Sbjct: 257 KNAAQSS-SRQDPRLEGSGRIIKTILSNKEGRH---VVTSQHDQEGHIITAEKRPPRIPN 312
Query: 360 PTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVV 419
P S V N K DD+ + LHGSG +SEK E+ RN+DRPDR V
Sbjct: 313 PRSVVKDQVVENAE---------KNHLDDKHSH--LHGSGLISEKTERHARNRDRPDRGV 361
Query: 420 WTPRRSDVSQANGERLSSSQ--PTQLLS-----DSVEVTRGEMKDDMSYGSKTVDIAAPT 472
W PRR D S + G SSS+ P Q S + R + G K ++I+A T
Sbjct: 362 WAPRRYDKSASGGTHSSSSEFSPMQQHSGENFCQQADGHRHANRRGPPRGLKEMEISAST 421
Query: 473 SGG 475
S G
Sbjct: 422 SDG 424
>gi|92893882|gb|ABE91932.1| Nonsense-mediated decay UPF3 [Medicago truncatula]
Length = 500
Score = 301 bits (770), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 212/527 (40%), Positives = 295/527 (55%), Gaps = 49/527 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-----SHNHTSRAYIDFNT 58
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLE 124
P V +FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+
Sbjct: 59 PDDVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQ 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----S 180
FL+ IAKP ENLPSAEIQL+++EA K+ +VTPLM++VR KRA ++G ++ S
Sbjct: 119 FLQQIAKPVENLPSAEIQLDKREA----VRKDIPIVTPLMDFVRHKRATKNGPRQQQHRS 174
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++
Sbjct: 175 LSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQ 234
Query: 236 EDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQR 295
DQ S+ T++S+ + + GI ++D+GKKK+LLLKG ERE V D+ Q
Sbjct: 235 GDQNPSNKSSNTASSDGNQTFDEN-GIAGSNDSGKKKLLLLKGNERETITVSDSDSMSQH 293
Query: 296 ESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGK 355
+S K S T KQ QR E GR+I+ IL N + RQ+QS + ++++Q N E K
Sbjct: 294 HTSSTKTILSSTALKQNQRHEGRGRIIKSILTNKDFRQSQS-SRAHSERQIQTSNLEREK 352
Query: 356 PLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRP 415
P HV + DG + R +HG SE+QE+R R+KDRP
Sbjct: 353 QSTRPV-----HV---QLILKGTDGAPEN-------RITVHGLHVSSERQERRFRHKDRP 397
Query: 416 DRVVWTPRRSDVSQANGERLSSSQP------TQLLSDSVEVTRGEMKDDMSYGSKTVDIA 469
DR VWT R + ++ SS T+L D+ GE+K S GS +
Sbjct: 398 DRGVWTSRSNGGGESLSSSASSQVDPLEGGHTELKHDTPSARSGEVK---SLGS--FRAS 452
Query: 470 APTSGGSHRHNGRRAATNITKD-DGCINMIEGKSSKRRGAAGSGGNE 515
+ G +H GRR KD DG + EGK ++ + G NE
Sbjct: 453 HSSENGFSKHFGRRGPIYGVKDVDGYSILSEGKHPRKSSTSAYGSNE 499
>gi|147800057|emb|CAN72659.1| hypothetical protein VITISV_042717 [Vitis vinifera]
Length = 437
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 183/360 (50%), Positives = 225/360 (62%), Gaps = 38/360 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKV++RHLPP +S+ L F +RY F PGK+S + Q YSRA
Sbjct: 76 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNS----QQRQSYSRA 131
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP
Sbjct: 132 YLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDP 191
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLE L+++AKP ENLPSAEIQLER+EAE +GA K+T +V PLM++VRQKRAA+
Sbjct: 192 EYLESLELLAKPFENLPSAEIQLERREAERAGAVKDTPIVMPLMDFVRQKRAAK------ 245
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPA 240
GRR STT Y+L+D+AKN KDKSTF +V KR DQ
Sbjct: 246 ------GRR---------LSTTM--------YVLRDAAKNTSAKDKSTFILVPKRADQLL 282
Query: 241 SSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPV 300
S +A ++ G+ D GKKK+LLLKGKEREI H L +Q +SPV
Sbjct: 283 SDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH----HLQQQNVTSPV 338
Query: 301 KNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGP 360
KN PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K P P
Sbjct: 339 KNILGANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQSEQQSQASNLEKEKRPPRP 397
>gi|357445255|ref|XP_003592905.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481953|gb|AES63156.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 565
Score = 284 bits (727), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 203/555 (36%), Positives = 288/555 (51%), Gaps = 76/555 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-----SHNHTSRAYIDFNT 58
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLE 124
P V +FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+
Sbjct: 59 PDDVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQ 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----S 180
FL+ IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ S
Sbjct: 119 FLQQIAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRS 174
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++
Sbjct: 175 LSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQ 234
Query: 236 EDQPASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGK 270
DQ S+ T++S+ T+ V + G+
Sbjct: 235 GDQNPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGR 294
Query: 271 KKILLLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILL 327
+ LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL
Sbjct: 295 RSYCFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILT 354
Query: 328 NNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSD 387
N + RQ+QS + ++++Q N E K P HV + DG +
Sbjct: 355 NKDFRQSQS-SRAHSERQIQTSNLEREKQSTRPV-----HV---QLILKGTDGAPEN--- 402
Query: 388 DRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQP------T 441
R +HG SE+QE+R R+KDRPDR VWT R + ++ SS T
Sbjct: 403 ----RITVHGLHVSSERQERRFRHKDRPDRGVWTSRSNGGGESLSSSASSQVDPLEGGHT 458
Query: 442 QLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRRAATNITKD-DGCINMIEG 500
+L D+ GE+K S+ + + + G +H GRR KD DG + EG
Sbjct: 459 ELKHDTPSARSGEVKSLGSFRA-----SHSSENGFSKHFGRRGPIYGVKDVDGYSILSEG 513
Query: 501 KSSKRRGAAGSGGNE 515
K ++ + G NE
Sbjct: 514 KHPRKSSTSAYGSNE 528
>gi|357445259|ref|XP_003592907.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481955|gb|AES63158.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 498
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 249/456 (54%), Gaps = 64/456 (14%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-----SHNHTSRAYIDFNT 58
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLE 124
P V +FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+
Sbjct: 59 PDDVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQ 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----S 180
FL+ IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ S
Sbjct: 119 FLQQIAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRS 174
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++
Sbjct: 175 LSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQ 234
Query: 236 EDQPASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGK 270
DQ S+ T++S+ T+ V + G+
Sbjct: 235 GDQNPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGR 294
Query: 271 KKILLLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILL 327
+ LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL
Sbjct: 295 RSYCFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILT 354
Query: 328 NNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSD 387
N + RQ+QS + ++++Q N E K P HV + DG +
Sbjct: 355 NKDFRQSQS-SRAHSERQIQTSNLEREKQSTRPV-----HV---QLILKGTDGAPEN--- 402
Query: 388 DRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPR 423
R +HG SE+QE+R R+KDRPDR VWT R
Sbjct: 403 ----RITVHGLHVSSERQERRFRHKDRPDRGVWTSR 434
>gi|147773122|emb|CAN62711.1| hypothetical protein VITISV_035617 [Vitis vinifera]
Length = 355
Score = 274 bits (701), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 179/366 (48%), Positives = 226/366 (61%), Gaps = 37/366 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKV++RHLPP + + L F RY FRPGK+S + Q YSRA
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNS----QQRQSYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KDSREGTIFKDP
Sbjct: 57 YLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDSREGTIFKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES--GAQ 178
+YLEFL+++AKP ENLPSAEIQLER+EAE RA +S G
Sbjct: 117 EYLEFLELLAKPFENLPSAEIQLERREAE---------------------RAEKSFQGCI 155
Query: 179 ESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVA 233
SL+ G++ RR+ +S+ S ++KRGS K++ Y+L+D+AKN KDKSTF++V
Sbjct: 156 PSLSNGKLSRRASGSSSGNPSLGSSKRGSGKRRLSTTMYVLRDAAKNTSAKDKSTFSLVP 215
Query: 234 KREDQPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDK 293
KR+DQ S +A ++ G+ D GKKK+LLLKGKEREI H L +
Sbjct: 216 KRDDQLLSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISH----HLQQ 271
Query: 294 QRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ-KMQNLNQE 352
Q +SPVKN PKQ QRRE GR+IR ILLN + RQ+QS QQ + NL +E
Sbjct: 272 QNVTSPVKNILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKE 331
Query: 353 NGKPLP 358
P P
Sbjct: 332 KRPPRP 337
>gi|357445257|ref|XP_003592906.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
gi|355481954|gb|AES63157.1| Regulator of nonsense transcripts 3A [Medicago truncatula]
Length = 385
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 219/388 (56%), Gaps = 49/388 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
RTKVVIRHLPP+++Q+ LL L F RYNWF F P K + H SRAY++
Sbjct: 4 RTKVVIRHLPPTITQDSLLPLIDSSFAGRYNWFSFHPPKIT-----SHNHTSRAYIDFNT 58
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDYLE 124
P V +FA NGH+F+N+KG FK VEYAPSQRVP S+K D+R+GTIFKDPDYL+
Sbjct: 59 PDDVIDFAHFFNGHLFLNQKGTHFKVTVEYAPSQRVPNHSSKKPEDARDGTIFKDPDYLQ 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE----S 180
FL+ IAKP ENLPSAEIQL+++EA P +VTPLM++VR KRA ++G ++ S
Sbjct: 119 FLQQIAKPVENLPSAEIQLDKREAVRKDIP----IVTPLMDFVRHKRATKNGPRQQQHRS 174
Query: 181 LAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSAKNARRKDKSTFTVVAKR 235
L+ G+V RRS S ++S ++RG K + Y+ +D K++ +DKST+ +V ++
Sbjct: 175 LSNGKVTRRSLTTSNGSSTSAPSRRGYTKNRLSTTMYVARDPGKSSTVQDKSTYILVPRQ 234
Query: 236 EDQPASSSGKETSASE-------------------------TICGVEGSVGIPLTSDTGK 270
DQ S+ T++S+ T+ V + G+
Sbjct: 235 GDQNPSNKSSNTASSDGNQTFDENGEDLEVNELDPNLVYDRTLWRHLIHVELLEVMILGR 294
Query: 271 KKILLLKG-KEREI--PHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILL 327
+ LKG KE+++ V D+ Q +S K S T KQ QR E GR+I+ IL
Sbjct: 295 RSYCFLKGMKEKQLLSTCVSDSDSMSQHHTSSTKTILSSTALKQNQRHEGRGRIIKSILT 354
Query: 328 NNETRQTQSVTGVQPQQKMQNLNQENGK 355
N + RQ+QS + ++++Q N E K
Sbjct: 355 NKDFRQSQS-SRAHSERQIQTSNLEREK 381
>gi|255539410|ref|XP_002510770.1| conserved hypothetical protein [Ricinus communis]
gi|223551471|gb|EEF52957.1| conserved hypothetical protein [Ricinus communis]
Length = 423
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/203 (60%), Positives = 148/203 (72%), Gaps = 4/203 (1%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
KVVIRHLPPSLSQ+ L + F +NWFCFRP SS +K+ RYSRAY+E K PA
Sbjct: 14 KVVIRHLPPSLSQSHLFSQFHHLLLLSFNWFCFRPPNSS----HKNHRYSRAYIEFKSPA 69
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 128
+FA L +GH+FV++ GAQFKAIVEYAPSQRVPKP KD REGTI+ DPDYLEFLK+
Sbjct: 70 DAGQFAHLFHGHLFVDDNGAQFKAIVEYAPSQRVPKPSPVKDGREGTIYTDPDYLEFLKL 129
Query: 129 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVGRVGR 188
IAKP +NLPSA +Q + ++A SGA KE + TPLME+VRQKRAAE G Q SL + +
Sbjct: 130 IAKPVDNLPSASVQFQIEDAAQSGAAKEPPITTPLMEFVRQKRAAEDGNQGSLVAVKGSK 189
Query: 189 RSRAASASKTSSTTTKRGSEKKK 211
R+ +AS K S+ KRG+EKKK
Sbjct: 190 RAGSASVIKPGSSANKRGAEKKK 212
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 117/224 (52%), Gaps = 33/224 (14%)
Query: 307 TVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTS---S 363
T PK+ QR A +I+ ILLNNET Q+QS+ Q + + QNL E+GK P P + +
Sbjct: 228 TAPKRSQRLRASEMIIKSILLNNETHQSQSLNATQHRHETQNLIVEHGKKWPRPMNKQVA 287
Query: 364 PNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPR 423
NGHV ++ +DG+TKR+ + +F K + G+ S KQ+K KDRPD VW P
Sbjct: 288 INGHVPGSEPSGPIYDGDTKRN-NSKFLTKGRYSVGSASAKQQKCI--KDRPDPGVWAPL 344
Query: 424 RSDVSQA-NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGR 482
V Q+ N E+LSS+ LL S S GSH+H G
Sbjct: 345 CHSVVQSDNEEKLSST----LLQHS----------------------GMNSKGSHKHFGH 378
Query: 483 RAATNITKDDGCINMIEGKSSKRRGAAGSGGNEKQVWIQKSSSG 526
A K DG E KSSKR GA+G G +KQVW+QKS+SG
Sbjct: 379 NVAAQRMKGDGSRIASEHKSSKRGGASGYGVQKKQVWVQKSASG 422
>gi|414587119|tpg|DAA37690.1| TPA: hypothetical protein ZEAMMB73_050614 [Zea mays]
Length = 270
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 176/267 (65%), Gaps = 27/267 (10%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+P RTKVV+R LPP+++Q ++ F RY+W CFRPG +S K+ RYSR
Sbjct: 1 MKDPAHRTKVVLRRLPPAIAQQAVVDQVDARFAGRYDWACFRPGNAS----QKNHRYSRL 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K P V EFAE+ NGH+FVNEKGAQFKA VEYAPSQ+VPK +KD REGT+ KDP
Sbjct: 57 YLNFKHPEDVVEFAEVFNGHIFVNEKGAQFKAFVEYAPSQQVPKSNVKKDGREGTVTKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+YLEFL+ I+KP E+LPSAEIQLERKEAE + A KE VVTPLM YVRQ+RAA+S AQ
Sbjct: 117 EYLEFLEFISKPTEHLPSAEIQLERKEAERAAAGKEAPVVTPLMMYVRQQRAAKSMAQ-- 174
Query: 181 LAVGRVGRR-SRAASASKTSSTTTKRGSEKKK---YILKDSAKNARRKDKSTFTVVAKRE 236
R G R SR + TSS++ KR EK++ Y+++DS K+K T+ +V KRE
Sbjct: 175 ----RPGSRLSRKVAGVVTSSSSPKRSFEKRRSSTYVVRDSI-----KEKPTYIMVPKRE 225
Query: 237 DQPASSSGKETSASETICGVEGSVGIP 263
+ T + + G G + +P
Sbjct: 226 EH--------TQREKIVSGNSGGMLVP 244
>gi|359486243|ref|XP_002264276.2| PREDICTED: regulator of nonsense transcripts 3B-like [Vitis
vinifera]
Length = 256
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/191 (59%), Positives = 144/191 (75%), Gaps = 9/191 (4%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKVV+RHLPP++S+ L F RY FRPGK+S K Q YSRA
Sbjct: 1 MKGPLDRTKVVVRHLPPTISEAAFLEQIDTVFKGRYTLVKFRPGKNS----QKRQSYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNEKG QFK IVEYAPSQR+PK + +KD REGTIFKDP
Sbjct: 57 YLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDP 116
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQES 180
+Y+EF++++AKP ENLPSAEIQLER+EAE +GA K+T +VTPLM++VRQKRAA+ ++ +
Sbjct: 117 EYMEFVELLAKPVENLPSAEIQLERREAERAGAVKDTPIVTPLMDFVRQKRAAKGVSRVA 176
Query: 181 L-----AVGRV 186
+ A+GR+
Sbjct: 177 IVYSLYALGRL 187
>gi|168052934|ref|XP_001778894.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669763|gb|EDQ56344.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1124
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/221 (54%), Positives = 148/221 (66%), Gaps = 18/221 (8%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKSSFFYSYKHQR 56
MKE RTKV +RHLPPSL+ A+F+D + Y W+ + PGKSS +K Q
Sbjct: 26 MKEQQARTKVSVRHLPPSLA----WAVFQDQIAVKYAGTYTWWSYHPGKSS----HKRQV 77
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
YSRAY+ KKP V +F E NGHVFVNE+GAQ+KA+VEYAP QRVPKP S+KD REGTI
Sbjct: 78 YSRAYINFKKPEDVIDFYEDFNGHVFVNERGAQYKALVEYAPYQRVPKPRSKKDVREGTI 137
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKR 171
DP+YL F++ +AKPAE LPSAE+QLERKEAE SG K+ +VVTPLMEYVR +R
Sbjct: 138 STDPEYLAFVEQLAKPAEYLPSAEVQLERKEAEKASNLASGTSKDAVVVTPLMEYVRSRR 197
Query: 172 AAESGAQESL-AVGRVGRRSRAASASKTSSTTTKRGSEKKK 211
AA+S Q + + ++ RS S T KRGSEK +
Sbjct: 198 AAKSTPQRGMSSSAKLAARSGGVPVSAFKLATQKRGSEKGR 238
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 119/294 (40%), Gaps = 63/294 (21%)
Query: 243 SGKETSASETICGVEGS--------VGIPLTSDTGKKKILLLKGKEREIPHVPDALLD-- 292
SG TS + + V GS V P + +K++L+ K K++E+ P+ +
Sbjct: 341 SGSRTSVAGKVSAVNGSGEGLTAGDVREPHKREYKRKQMLVAKDKDKELAVDPEQAVSVA 400
Query: 293 -----------KQRESSPVKNSA-------------------SPTVPKQIQRREAGGRLI 322
+ R S P K +A S + KQI R+E GGR
Sbjct: 401 NSVGVGTTNNQRHRSSGPAKVAAGGVQQMQSAVAHRATSLGDSISSGKQIHRQEYGGR-- 458
Query: 323 RKILLNNETRQTQSVTGV------QPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIF 376
L Q S G+ QPQ + + +P P P + S +
Sbjct: 459 --TSLRGTPAQGSSAPGLGSDSHAQPQASGTQVEKVGKRP-PRPQAIRLAGKDQAISLVS 515
Query: 377 SFDGNTKRSSDDRFARKVLHGSGAVS-----EKQE-KRTRNKDRPDRVVWTPRRSD--VS 428
S + + + + + K + GA S +KQ+ +R RNKDRPDR VWTPRR +
Sbjct: 516 SVEAEGQAGNGEERSVKQVANDGAASSPSLLDKQDARRLRNKDRPDRPVWTPRRREGVTG 575
Query: 429 QANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGR 482
+A+G ++S + + S E T GSK D A +SG RHNGR
Sbjct: 576 KADGTAFANSPASAAGTASTEGTSSTASSGTDVGSKN-DRAERSSG---RHNGR 625
>gi|359486154|ref|XP_003633401.1| PREDICTED: uncharacterized protein LOC100852735 [Vitis vinifera]
Length = 322
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 178/315 (56%), Gaps = 31/315 (9%)
Query: 212 YILKDSAKNARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGSVGIPLTSDTGKK 271
Y+L+D+AK+ KDKSTF +V KR+DQ S +A +E G+ D GKK
Sbjct: 2 YVLRDTAKSTSAKDKSTFILVPKRDDQLLSDKSVNLAAGGGAEALEEESGVSGAVDAGKK 61
Query: 272 KILLLKGKEREIPHVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNET 331
K+LLLKGKEREI H L +Q +SPVKN PKQ QRRE GR+IR ILLN +
Sbjct: 62 KVLLLKGKEREISH----HLLQQNVTSPVKNILGANAPKQNQRREGSGRIIRSILLNKDA 117
Query: 332 RQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFA 391
RQ+QS Q +Q+ Q N E K P P P+ + + + T + DD+
Sbjct: 118 RQSQSSM-FQTEQQSQASNLEKEKRPPRP---PHIQLASKE---------TNGAQDDKVV 164
Query: 392 RKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP-RRSDVSQANGERLSSSQPTQLLSDSVEV 450
+H VSEKQ+KRTRNKDRPDR VWTP RRSD S A+ E LSSS SD E
Sbjct: 165 GNDVH--SFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHASDESLSSSASQPTSSDFPEG 222
Query: 451 TRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGRRAATNITKD-DGCINMIEG 500
+ GEM+ DMS +++ ++ A SG GSH+H+GRR T+ KD DG + EG
Sbjct: 223 SHGEMRSDMS-NARSGEVKALGSGRGGHSALDNGSHKHSGRRGPTHSVKDADGSSIVSEG 281
Query: 501 KSSKRRGAAGSGGNE 515
K SKR A G G +E
Sbjct: 282 KHSKRGSAPGYGSHE 296
>gi|144583661|gb|ABP01544.1| UPF3, partial [Nicotiana attenuata]
Length = 168
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/169 (51%), Positives = 119/169 (70%), Gaps = 5/169 (2%)
Query: 104 KPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPL 163
K +S+KD+RE TI KDP+YLEFL+ +AKP ENLPSAEIQLERKEAE +G+ K+ +VTPL
Sbjct: 1 KHWSKKDAREATILKDPEYLEFLEFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPL 60
Query: 164 MEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK----YILKDSAK 219
M+Y+RQKRAA+ GA+ S++ GR +R AS+ SS +KRGSEK+ Y+L+DS+K
Sbjct: 61 MDYIRQKRAAKGGARRSISNGRSTKRVGGASSRTPSSAASKRGSEKRTSTTMYVLRDSSK 120
Query: 220 NARRKDKSTFTVVAKREDQPASSSGKETSASETICGVEGSVGIPLTSDT 268
KDKS + +V KR+DQ S ++ I VEG +G +T+D+
Sbjct: 121 AGNGKDKS-YILVPKRDDQQLSDKSGTSAPGSGIDLVEGEIGRSVTADS 168
>gi|224119916|ref|XP_002331094.1| predicted protein [Populus trichocarpa]
gi|222872822|gb|EEF09953.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 81/112 (72%), Gaps = 4/112 (3%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+TKVV+RHLPP +SQ + F+ RYNW +RPGKSS KHQ SRAY++ K+
Sbjct: 8 KTKVVVRHLPPGVSQPMFVEQIDLAFSGRYNWLSYRPGKSS----QKHQSCSRAYIDFKR 63
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 118
P V +FAE NGH+FVNEKG QFKAIVEYAPSQ VPK +S+KD REGTI K
Sbjct: 64 PDDVIDFAEFFNGHLFVNEKGTQFKAIVEYAPSQHVPKQWSKKDGREGTILK 115
>gi|147777847|emb|CAN60293.1| hypothetical protein VITISV_023400 [Vitis vinifera]
Length = 304
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 124/275 (45%), Positives = 157/275 (57%), Gaps = 37/275 (13%)
Query: 253 ICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVKNSASPTVPKQI 312
+ GV G+V D GKKK+LLLKGKEREI H L +Q +SPVKN PKQ
Sbjct: 5 VSGVSGAV------DAGKKKVLLLKGKEREISH----HLLQQNVTSPVKNILGANAPKQN 54
Query: 313 QRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNND 372
QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K P P P+ + + +
Sbjct: 55 QRREGSGRIIRSILLNKDARQSQS-SMFQTEQQSQASNLEKEKRPPRP---PHIQLASKE 110
Query: 373 SPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTP-RRSDVSQAN 431
T + DD+ +H VSEKQ+KRTRNKDRPDR VWTP RRSD S A+
Sbjct: 111 ---------TNGAQDDKVVGNDVH--SFVSEKQDKRTRNKDRPDRGVWTPLRRSDGSHAS 159
Query: 432 GERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGR 482
E LSSS SD E + GEM+ DMS +++ ++ A SG GSH+H+GR
Sbjct: 160 DESLSSSASQPTSSDFPEGSHGEMRSDMS-NARSGEVKALGSGRGGHSALDNGSHKHSGR 218
Query: 483 RAATNITKD-DGCINMIEGKSSKRRGAAGSGGNEK 516
R T+ KD DG + EGK SKR A G G +E+
Sbjct: 219 RGPTHSVKDADGSSIVSEGKHSKRGSAPGYGSHEE 253
>gi|302781276|ref|XP_002972412.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
gi|300159879|gb|EFJ26498.1| hypothetical protein SELMODRAFT_97155 [Selaginella moellendorffii]
Length = 118
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 6/118 (5%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK+PL RTKVV+R LPP+LS++ L++ + F Y W FRPGKS+ +Q +SRA
Sbjct: 1 MKDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST------NQIHSRA 54
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 118
Y+E ++P V F E +GHVFVNEKG+Q+KA+VEYAP QRVP +KD REG+I +
Sbjct: 55 YIEFERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|302804985|ref|XP_002984244.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
gi|300148093|gb|EFJ14754.1| hypothetical protein SELMODRAFT_119852 [Selaginella moellendorffii]
Length = 118
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 6/118 (5%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
M++PL RTKVV+R LPP+LS++ L++ + F Y W FRPGKS+ +Q +SRA
Sbjct: 1 MRDPLSRTKVVVRRLPPTLSEDALVSRIQTRFARPYLWMLFRPGKST------NQIHSRA 54
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 118
Y+E ++P V F E +GHVFVNEKG+Q+KA+VEYAP QRVP +KD REG+I +
Sbjct: 55 YIEFERPEDVLAFHEDFHGHVFVNEKGSQYKAMVEYAPYQRVPDLRVKKDGREGSILR 112
>gi|384246467|gb|EIE19957.1| hypothetical protein COCSUDRAFT_44353 [Coccomyxa subellipsoidea
C-169]
Length = 382
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
++RTKVVIR LPPS++ D+ L D N +YNWF F GK+S + +SR YV
Sbjct: 1 MERTKVVIRKLPPSIADADVRELV-DSTNVKYNWFSFVQGKTSV----RKVVHSRCYVNF 55
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
+ P+ + F + H FV ++GAQF++ VEYAP Q+VP+ ++D REGT+ KDP+YL
Sbjct: 56 EDPSDIPAFKAAVEAHAFVTDRGAQFRSSVEYAPFQKVPQGKPKRDPREGTLDKDPEYLA 115
Query: 125 FLKVI-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
F++ + A+P + + A G P+ VT LM Y++ K
Sbjct: 116 FVESLNAQPEALPAAEAAGSSGQRAGQEGGPQ----VTALMAYLQDK 158
>gi|168003533|ref|XP_001754467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694569|gb|EDQ80917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 987
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 82/207 (39%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKS---------- 46
MKE RTKV +RHLPPSLS+ A+F+D + Y W+ + PGK+
Sbjct: 26 MKEQQARTKVAVRHLPPSLSE----AVFQDQIAGKYAGAYTWWSYHPGKNRSSRKRRQYV 81
Query: 47 ------------SFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK-------- 86
+ S+K Q YSRAY+ KKP V +F E NGHVFVNE+
Sbjct: 82 AHNPRNQFDAVGAIACSHKRQVYSRAYINFKKPEDVIDFYEDFNGHVFVNERVMDFCKHW 141
Query: 87 --------------------------------------------GAQFKAIVEYAPSQRV 102
GAQ+KA+VEYAP QRV
Sbjct: 142 NEGIFHFFCVGHHKLEVESGCDYTLVSRFLMLGDSSRTERLEECGAQYKALVEYAPYQRV 201
Query: 103 PKPFSRKDSREGTIFKDPDYLEFLKVI 129
PKP S+KD REGTIFK + V+
Sbjct: 202 PKPRSKKDVREGTIFKGATMIVITTVL 228
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 67/107 (62%), Gaps = 18/107 (16%)
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKRAA 173
DP+YL F++ +AKPAE LPSAEIQLER+EAE +SG K+ +VVTPLME+VR +RAA
Sbjct: 277 DPEYLAFVEQLAKPAEYLPSAEIQLERREAEKAASLVSGTSKDAVVVTPLMEFVRSRRAA 336
Query: 174 ESGAQE---------SLAVGRVGRRSRAASASKTSSTTTKRGSEKKK 211
+S Q +A+G + SAS S + KR SEK +
Sbjct: 337 KSIPQVILPSSVSLFGMAMGDL----EGVSASAYSLASQKRSSEKGR 379
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%), Gaps = 1/24 (4%)
Query: 402 SEKQE-KRTRNKDRPDRVVWTPRR 424
SEKQ+ +R RNKDRPDR VWTPRR
Sbjct: 684 SEKQDARRLRNKDRPDRPVWTPRR 707
>gi|296081104|emb|CBI18298.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 72/137 (52%), Gaps = 36/137 (26%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKV++RHLPP + + L F RY FRPGK+S + Q YSRA
Sbjct: 1 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNS----QQRQSYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNE KDP
Sbjct: 57 YLDFKRPEDVIEFAEFFDGHVFVNE--------------------------------KDP 84
Query: 121 DYLEFLKVIAKPAENLP 137
+YLEFL+++AKP ENLP
Sbjct: 85 EYLEFLELLAKPFENLP 101
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 242 SSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRESSPVK 301
+SG E E+ GV G+V D GKKK+LLLKGKEREI H L +Q +SPVK
Sbjct: 127 TSGAEALKEES--GVSGAV------DAGKKKVLLLKGKEREISH----HLQQQNVTSPVK 174
Query: 302 NSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ-KMQNLNQENGKPLP 358
N PKQ QRRE GR+IR ILLN + RQ+QS QQ + NL +E P P
Sbjct: 175 NILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRP 232
>gi|427784155|gb|JAA57529.1| Putative regulator of nonsense transcripts 3a [Rhipicephalus
pulchellus]
Length = 415
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 98/169 (57%), Gaps = 11/169 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVV+R LPP+++++ L Y +F K S +SRAY+
Sbjct: 33 TKVVVRRLPPTMTEDQFLEQISPVPESDYMYFV----KGDL--SLGPHAFSRAYINFVNQ 86
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFL 126
+F F E + ++FV+EKG ++ A+VEYAP Q++PK +R KD + GTI +DP+Y+ FL
Sbjct: 87 DEIFIFKEKFDDYIFVDEKGNEYPALVEYAPFQKIPKRRNRKKDPKCGTIEQDPEYINFL 146
Query: 127 KVIAKPAE-NLPSAEI---QLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ + +P E LPS + ++E +E E+ VVTPL+EY++Q++
Sbjct: 147 ESLEQPEEVTLPSIDTYIEEIEAREKEIKANNGCLKVVTPLIEYLQQRK 195
>gi|430813479|emb|CCJ29190.1| unnamed protein product [Pneumocystis jirovecii]
Length = 395
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 104/174 (59%), Gaps = 9/174 (5%)
Query: 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAY 61
+P R KVVIR+LPP LS+ L ++ ++ R W F PGK S + K+ +Y+RAY
Sbjct: 18 QPATRLKVVIRYLPPDLSEQTFKELVKEWIDEERVEWSSFYPGKVSSNRN-KNDKYARAY 76
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDP 120
++ K P + F + H+F +EKG + +VE+AP Q+VP+ +K D+R+GTI D
Sbjct: 77 IKFKSPEALIAFHKGFGAHLFTDEKGKGQRVLVEFAPFQKVPRLERQKHDARQGTIDDDA 136
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR-QKRAA 173
+++ F + + +N P E Q +++E ++ AP T +TPL+EY+R QK A
Sbjct: 137 EFIAFQETLKNTNKN-PEEEAQNKKEEDDM--APIGT--ITPLIEYLRVQKETA 185
>gi|296081100|emb|CBI18294.3| unnamed protein product [Vitis vinifera]
Length = 273
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 72/137 (52%), Gaps = 36/137 (26%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK PL RTKV++RHLPP +S+ L F +RY F PGK+S + Q YSRA
Sbjct: 1 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNS----QQRQSYSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y++ K+P V EFAE +GHVFVNE KDP
Sbjct: 57 YLDFKRPEDVIEFAEFFDGHVFVNE--------------------------------KDP 84
Query: 121 DYLEFLKVIAKPAENLP 137
+YLE L+++AKP ENLP
Sbjct: 85 EYLESLELLAKPFENLP 101
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 71/123 (57%), Gaps = 13/123 (10%)
Query: 238 QPASSSGKETSASETICGVEGSVGIPLTSDTGKKKILLLKGKEREIPHVPDALLDKQRES 297
Q +SG E E+ GV G+V D GKKK+LLLKGKEREI H L +Q +
Sbjct: 123 QVQKTSGAEALKEES--GVSGAV------DAGKKKVLLLKGKEREISH----HLQQQNVT 170
Query: 298 SPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPL 357
SPVKN PKQ QRRE GR+IR ILLN + RQ+QS + Q +Q+ Q N E K
Sbjct: 171 SPVKNILGANAPKQNQRREGSGRIIRSILLNKDARQSQS-SMFQSEQQSQASNLEKEKRP 229
Query: 358 PGP 360
P P
Sbjct: 230 PRP 232
>gi|391331227|ref|XP_003740051.1| PREDICTED: uncharacterized protein LOC100906049 [Metaseiulus
occidentalis]
Length = 497
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 27/172 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFY-----SYKHQRYSRAYVE 63
K+V+R +PPS+++ D L N F P S+++ S +SRAY+
Sbjct: 34 KIVVRRMPPSMTETDFL-----------NQFSPLPEHDSYYFADADGSMGGNSFSRAYIA 82
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDY 122
L+ V EF + + +V ++E+G ++ +VE+AP Q++P+ +K DS+ GT+ DP+Y
Sbjct: 83 LRSHQDVLEFRDKWDDYVCLDERGQEYPLVVEFAPFQKMPRKKPKKADSKCGTLENDPEY 142
Query: 123 LEFLKVI-AKPAENLPSAEI---QLERKEAEL---SGAPKETLVVTPLMEYV 167
LEFL+ + + LPS E +LER++ EL +G P V+TPL+E+V
Sbjct: 143 LEFLETMDLEEGIELPSMETTVEELERRDRELRANNGVPN---VLTPLIEFV 191
>gi|390348029|ref|XP_780145.3| PREDICTED: uncharacterized protein LOC574684 [Strongylocentrotus
purpuratus]
Length = 373
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 22/171 (12%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQR------YSRAY 61
TKVVIR LPP+L++ + + D F D + +FY K R YSRAY
Sbjct: 16 TKVVIRCLPPALTEEEFREIV-DPFPD-----------NEYFYYVKADRSLGEHAYSRAY 63
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDP 120
+ K + F + +GH FVN +G + A+VE+AP Q+VPK +K D+R TI +D
Sbjct: 64 INFMKEEDIIPFRDTWDGHEFVNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATIEEDS 123
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
DY +F++ + E+ SAE LE E K V+TPL+E+++ KR
Sbjct: 124 DYKKFVETLNAEIEHPTSAETMLEEIEMRAKEPGK---VMTPLIEFLKVKR 171
>gi|307110922|gb|EFN59157.1| hypothetical protein CHLNCDRAFT_50004 [Chlorella variabilis]
Length = 119
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 71/117 (60%), Gaps = 5/117 (4%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
R KVV+R LPPSL + R+ + +R +WF + GK+S K +SRAY+ K
Sbjct: 6 RCKVVVRRLPPSLQEEAFRGAVRE-WIERADWFSYVQGKAS----SKDLLHSRAYLRFKD 60
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
A V F + +GH FVNE+G QF+ VEYA QRVP+ ++D +EGTI +D DYL
Sbjct: 61 AADVPRFQQAWDGHAFVNERGTQFRCQVEYAAYQRVPRQRVKRDPKEGTIERDADYL 117
>gi|241723783|ref|XP_002404304.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
gi|215505390|gb|EEC14884.1| regulator of nonsense transcripts 3B, putative [Ixodes scapularis]
Length = 452
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP++S++ L + Y +F G S +SRAY+
Sbjct: 33 TKVVIRRLPPTMSEDQFLDQISPVPENDYMYFV--KGNKSL----GPNAFSRAYINFINQ 86
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEFL 126
+F F E + +VF++EKG ++ AIVEYAP Q++PK +R KD + GTI +DP+YL+FL
Sbjct: 87 EEIFIFKEKFDEYVFLDEKGNEYPAIVEYAPFQKIPKRRTRKKDPKCGTIEQDPEYLKFL 146
Query: 127 KVIAKPAE-NLPSAEIQLE 144
+ + +P E +LPS + +E
Sbjct: 147 ESLEQPEEVSLPSIDTYIE 165
>gi|115397199|ref|XP_001214191.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192382|gb|EAU34082.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 546
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 96/179 (53%), Gaps = 24/179 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+QN+ + D + + +WF ++PGK S + K R SRAY+
Sbjct: 40 RLKLLVRRLPPGLTQNEFESAIGDEWKVGAGKVDWFQYKPGKVSKDPA-KPSRPSRAYIH 98
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFK------AIVEYAPSQRVPKPFSRKDSREGTIF 117
+ + + + FV+ + A +E+AP ++P RKD+R+GTI
Sbjct: 99 VVSSEYIVPLSNKVRQTSFVDARNTSNDPVLLGPAALEFAPYAKIPGSRVRKDARQGTID 158
Query: 118 KDPDYLEFLKVIAKP-AENLPSAEIQLERKEAELSGAP---KETLVVTPLMEYVRQKRA 172
+DPD++ FL+ + +P A+ P E +G P KET+ TPL++Y+++K+A
Sbjct: 159 QDPDFIAFLESLTQPIAKPAP----------VEATGEPEDKKETITTTPLVQYIKEKKA 207
>gi|260796733|ref|XP_002593359.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
gi|229278583|gb|EEN49370.1| hypothetical protein BRAFLDRAFT_70868 [Branchiostoma floridae]
Length = 529
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 19/171 (11%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
TKVVIR LPPSL+Q L L DH ++F F S + RAY+
Sbjct: 36 TKVVIRRLPPSLTQETLVEELGPLPDH-----DFFLFVAADMSLV----PHAFCRAYINF 86
Query: 65 KKPAGVFEFAELLNGHVFVNE----KGAQFKAIVEYAPSQRVPKPFS-RKDSREGTIFKD 119
K P + F + +G++F + K ++ AIVE+AP Q+VPK S +KD++ TI +D
Sbjct: 87 KNPEEIISFKDKFDGYIFNDTTSSGKKMEYPAIVEFAPYQKVPKGRSKKKDTKCATIEQD 146
Query: 120 PDYLEFLKVIAKP-AENLPSAEIQLERKEAELSGAPK-ETLVVTPLMEYVR 168
PDYL+FL+ + + P A I+ +E E K ET + TPL+++++
Sbjct: 147 PDYLKFLESLKNDNTGDAPPANIESLLEEIEARDRKKEETKMTTPLLDFIK 197
>gi|449669494|ref|XP_002161632.2| PREDICTED: uncharacterized protein LOC100202729 [Hydra
magnipapillata]
Length = 555
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 7/171 (4%)
Query: 41 FRPGKSSFFYS------YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV 94
F S FF+ + + ++RAYV + V +F +G++F + G +F A++
Sbjct: 55 FVIAMSEFFFDSLDKQIFGNDGFTRAYVNFIEYNDVLDFRNKFDGYIFYDNLGNEFSAVI 114
Query: 95 EYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAP 154
EYAP Q++P+ + D + T KDP+YL+FL+ + K E LPSAE +E +A
Sbjct: 115 EYAPCQQIPRTKQKIDQKINTFDKDPEYLQFLENLGKQVELLPSAEKYIEELQALTIADK 174
Query: 155 KETLVVTPLMEYVRQKRAAESGA-QESLAVGRVGRRSRAASASKTSSTTTK 204
K TPL +Y+++KR + A Q ++A R+ R KT ++ K
Sbjct: 175 KREKTRTPLTDYLKEKRDSRIAARQLAIAQREKERKQRLEEKEKTKASRKK 225
>gi|391865862|gb|EIT75141.1| hypothetical protein Ao3042_08989 [Aspergillus oryzae 3.042]
Length = 575
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + A + + +WF ++PGK S + K R SRAYV
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPA-KPSRPSRAYVH 102
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIF 117
+ + + + F + + I VEYAP +VP RKD+R+GTI
Sbjct: 103 VVSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTID 162
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 163 QDPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|238490958|ref|XP_002376716.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
gi|220697129|gb|EED53470.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
flavus NRRL3357]
Length = 575
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 92/175 (52%), Gaps = 16/175 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + A + + +WF ++PGK S + K R SRAYV
Sbjct: 44 RLKLLVRRLPPGLTQAEFEAAVGPEWKLGAGKIDWFQYKPGKVSKDPA-KPSRPSRAYVH 102
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIF 117
+ + + + F + + I VEYAP +VP RKD+R+GTI
Sbjct: 103 VVSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTID 162
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 163 QDPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|402084290|gb|EJT79308.1| hypothetical protein GGTG_04393 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 705
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 24/225 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P++ KVV+R LPP +++ + ++ D + + WF F+ GK S + K R S
Sbjct: 38 KTPVEGQKVVLRRLPPGITEQETVSFLSDEWKPGGAKVGWFSFQAGKISKDPA-KPSRPS 96
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS------QRVPKPFSRKDSR 112
RAY+ + K V E + +++ K + + P ++VP R D+R
Sbjct: 97 RAYLHVLKTEQVMGLVEHVRNTEWLDAKDTSASSCLVGPPMLDISIYKKVPSGKVRADAR 156
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
GTI +DP++++FL+ +A P ++ P A+ E E ++ A TPL++Y+R+K+A
Sbjct: 157 AGTIDQDPEFMDFLEALANPNKD-PEADYTAEEDEKLITKA-----SSTPLIDYLREKKA 210
Query: 173 AESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDS 217
+ A+ES A G+ G+ SR S T R +E K KDS
Sbjct: 211 NK--AKES-ATGKSGKHSR-----HESGTAKGRSAEDSKKRTKDS 247
>gi|224119924|ref|XP_002331096.1| predicted protein [Populus trichocarpa]
gi|222872824|gb|EEF09955.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 87/143 (60%), Gaps = 17/143 (11%)
Query: 387 DDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQ--PTQLL 444
DD+ LHG +EKQE+RTRNKDRPDRVVWT RRS+ S A+ E LSSS TQ
Sbjct: 29 DDKVVGNDLHG--FPNEKQERRTRNKDRPDRVVWTLRRSEGSYASDESLSSSAYLSTQSG 86
Query: 445 SDSVEVTRGEMKDDMSYGSKTVDIAAPTSG---------GSHRHNGRRAATNITKD-DGC 494
DS +V G++K D + ++ ++ A SG GSH+H+GRR + +D DG
Sbjct: 87 FDSSQVNHGDVKAD-TLNLRSGEVKALGSGRSNHSSLDNGSHKHSGRRGPPHPVRDADG- 144
Query: 495 INMIEGKSSKRRGAAGSGGNEKQ 517
+ +EGKS KR GA+G G +E Q
Sbjct: 145 -STVEGKSLKRGGASGYGSHEVQ 166
>gi|389644656|ref|XP_003719960.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|351639729|gb|EHA47593.1| hypothetical protein MGG_03912 [Magnaporthe oryzae 70-15]
gi|440470677|gb|ELQ39739.1| hypothetical protein OOU_Y34scaffold00487g84 [Magnaporthe oryzae
Y34]
gi|440487905|gb|ELQ67669.1| hypothetical protein OOW_P131scaffold00303g13 [Magnaporthe oryzae
P131]
Length = 676
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 25/203 (12%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P++ K+VIR LPP +S+ ++L D + + WF F PGK+S S K R S
Sbjct: 35 KAPIEGQKIVIRRLPPGISEEEVLKYLEDEWQPNKGKVGWFSFMPGKTSNDPS-KPSRPS 93
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS------QRVPKPFSRKDSR 112
RAY+ L + V + + + + G + P+ +++P +R D+R
Sbjct: 94 RAYLHLLRTEYVMPLMDQVRSAQWEDANGTCSDPCLCGPPAMEMSIYKKIPTSKNRADAR 153
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV----TPLMEYVR 168
+GTI +DP+++ FL+ +A P + + E + G +E +V TPL++Y+R
Sbjct: 154 QGTIDQDPEFMAFLESLANPTGD--------KDPETDHVGQEEEQPIVKASSTPLIDYLR 205
Query: 169 QKRAAESGAQESLAVGRVGRRSR 191
+K+A +S + +V R G+ SR
Sbjct: 206 EKKANKS---KDTSVARSGKHSR 225
>gi|328782061|ref|XP_624605.3| PREDICTED: hypothetical protein LOC552225 isoform 2 [Apis
mellifera]
Length = 614
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP+++Q L + Y +F + S Y++ +RAY+ +
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPENDYLYFV-KADMSMGQYAF-----ARAYINFVEQ 93
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEF 125
+F F E + +VF++ KG ++ A+VE+AP QR+PK + +KD + GTI DP Y+ F
Sbjct: 94 QDIFMFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISF 153
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
L+ AE + + + E S P + + TPL+EYV+Q++
Sbjct: 154 LETRKN-----QEAESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRK 198
>gi|328782059|ref|XP_003250077.1| PREDICTED: hypothetical protein LOC552225 isoform 1 [Apis
mellifera]
Length = 623
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 17/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP+++Q L + Y +F + S Y++ +RAY+ +
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPENDYLYFV-KADMSMGQYAF-----ARAYINFVEQ 93
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEF 125
+F F E + +VF++ KG ++ A+VE+AP QR+PK + +KD + GTI DP Y+ F
Sbjct: 94 QDIFMFREKFDNYVFIDSKGTEYPAVVEFAPFQRLPKKRTGKKKDLKCGTIESDPYYISF 153
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
L+ AE + + + E S P + + TPL+EYV+Q++
Sbjct: 154 LETRKN-----QEAESNISQPKTEYSYQPPDNTPKKITTTPLLEYVKQRK 198
>gi|317145669|ref|XP_001820983.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus oryzae
RIB40]
Length = 575
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S + K R SRAYV
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDPA-KPSRPSRAYVH 102
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIF 117
+ + + + F + + I VEYAP +VP RKD+R+GTI
Sbjct: 103 VVSSDHIIPLSNKVRQVSFTDARNTFNDPILLGPPSVEYAPYAKVPGSRVRKDARQGTID 162
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DPD++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 163 QDPDFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 211
>gi|383862435|ref|XP_003706689.1| PREDICTED: uncharacterized protein LOC100878124 [Megachile
rotundata]
Length = 620
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP+++Q+ L Y +F F +SRAY+ +
Sbjct: 40 TKVVIRRLPPTMTQDQFLEQVSPLPEHDYLYFVKADMSMGQFA------FSRAYINFIEQ 93
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLEF 125
+F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + GTI DP Y+ F
Sbjct: 94 QDIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDPYYISF 153
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
L+ + AE + + + E S P + + TPL+EY++Q++
Sbjct: 154 LESLKNQE-----AESNVAQPKTEYSYQPPDNTPKKVTTTPLLEYLKQRK 198
>gi|402225519|gb|EJU05580.1| hypothetical protein DACRYDRAFT_104067 [Dacryopinax sp. DJM-731
SS1]
Length = 469
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
R KV++R LPP+L + N+ W F GK ++ SRAY+ K
Sbjct: 40 RLKVIVRRLPPNLPEAVFWKSVEPWVNEENTTWRIFYSGKIKPKLENENVP-SRAYIMFK 98
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
P V +F+ NGH F +++G + +A+VE+AP Q+VP + D R+GTI +DPD++ F
Sbjct: 99 TPEQVAQFSSAYNGHAFRDKQGRESQAVVEFAPYQKVPITNVKPDVRQGTIDQDPDFMSF 158
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
+ + P E A + E +S AP V+ PL+E + Q+
Sbjct: 159 MTNLNAPVEYESLASL-----EKGVSQAPALEPVIAPLIEALIQQ 198
>gi|302907552|ref|XP_003049671.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
gi|256730607|gb|EEU43958.1| hypothetical protein NECHADRAFT_89796 [Nectria haematococca mpVI
77-13-4]
Length = 641
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 18/181 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+VIR LPP ++Q++ + + + + R +WF F PGK S S K R RAYV +
Sbjct: 52 KLVIRRLPPGMTQDEFVTILGNAWELGKGRVDWFSFAPGKISTDPS-KPSRPGRAYVHVM 110
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFK 118
+ + + + V+ + K A F VE+A ++VP R D+R+GTI +
Sbjct: 111 RKDDIMALNDTVRTAVWEDAK-ATFTNPSLIGPPSVEFAIYKKVPGNKKRTDARQGTIDQ 169
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA--AESG 176
DP+++ FL+ +A PA P E E +E + G + + TPL+EY+++K+A A+ G
Sbjct: 170 DPEFMAFLEDLANPA---PPKE-NAEGEEGDDIGKAETKVTTTPLIEYLKEKKANKAKDG 225
Query: 177 A 177
A
Sbjct: 226 A 226
>gi|405955505|gb|EKC22596.1| Regulator of nonsense transcripts 3A [Crassostrea gigas]
Length = 638
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 89/165 (53%), Gaps = 11/165 (6%)
Query: 12 IRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVF 71
+R LPPSL+ L+ +++F F S + ++RAY+ PA +F
Sbjct: 1 MRRLPPSLTPESLIEQISPLPE--HDFFYFVKADMSLGINA----FTRAYINFMNPAEIF 54
Query: 72 EFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFLKVIA 130
F + +G+VF++ KG ++ AIVE+AP Q+VPK ++K DS++GT+ +D DYL+F +++
Sbjct: 55 NFRDKFDGYVFIDGKGNEYPAIVEFAPFQKVPKRKTKKPDSKKGTLEQDADYLKFKEMLE 114
Query: 131 KPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
P + P + + K TPL+EY++++R
Sbjct: 115 SPGNDDPKTIDEYLEELEAKEKEMKSNHGCVKTSTPLIEYLKKRR 159
>gi|91076870|ref|XP_974984.1| PREDICTED: similar to Upf3 regulator of nonsense transcripts-like
protein B [Tribolium castaneum]
gi|270001957|gb|EEZ98404.1| hypothetical protein TcasGA2_TC000872 [Tribolium castaneum]
Length = 450
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 86/169 (50%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP++ Q L + Y++ G +S +SRAY+ P
Sbjct: 27 TKVVIRRLPPNMDQETFLNQISPVPS--YDYLYMVKGDASL----GENSFSRAYINFVNP 80
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLEF 125
+++F E + +VF++ G ++ A+VE+A Q++PK + R D + GTI DP YLEF
Sbjct: 81 NDIYDFKEKFDNYVFLDSAGHEYAAVVEFAAFQKIPKRRNKVRVDPKVGTIESDPYYLEF 140
Query: 126 LKVIAKPAE--NLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+++I KP E P Q+ + TPL+EYV+ KR
Sbjct: 141 VEMINKPPEPDEKPEYSYQI--------TTENKNETSTPLLEYVKNKRV 181
>gi|159465777|ref|XP_001691099.1| UPF3 protein [Chlamydomonas reinhardtii]
gi|158279785|gb|EDP05545.1| UPF3 protein [Chlamydomonas reinhardtii]
Length = 371
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
MK P Q+TKV++R LPP++S++ ++ RYNW + GK S K SRA
Sbjct: 1 MKPPRQKTKVLVRKLPPAMSEDTFKSVLDSVAAGRYNWLSYYAGKVSL----KRVASSRA 56
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
Y+ V+ F + +GHVF++ +G Q++ VEYAP Q++P ++ EGTI
Sbjct: 57 YINFVSEEDVYNFKQRFDGHVFISRQGNQYRCAVEYAPLQKMPTLEAKPHPLEGTI 112
>gi|408391884|gb|EKJ71250.1| hypothetical protein FPSE_08489 [Fusarium pseudograminearum CS3096]
Length = 670
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 16/174 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+ IR LPP +++ + ++ + + +WFCF GK S S K R RAYV +
Sbjct: 77 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPS-KPSRPGRAYVHVM 135
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSREGTIFK 118
+ + +E + V+ + K A F + +++ A ++VP R D+R+GTI +
Sbjct: 136 RKDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPVLDIAIYKKVPSAKKRTDARQGTIDQ 194
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
DPD++ FL+ +A P P E E +E + G + + TPL+EY+++K+A
Sbjct: 195 DPDFMAFLEELANP---TPPKEPD-EGEEGDDLGKSENKVTTTPLIEYLKEKKA 244
>gi|312383539|gb|EFR28591.1| hypothetical protein AND_03300 [Anopheles darlingi]
Length = 685
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFY-----SYKHQRYSRAYV 62
T+VV+RHLPP++++ + F + + P F++ S SRAY+
Sbjct: 73 TRVVVRHLPPTMTE--------EQFREEISVEGAFPKHEEFYFVGPDWSLGMSTTSRAYI 124
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDP 120
+ P V F +G+ F++ KGA+F A+VEYAP Q++PK SR D + TI DP
Sbjct: 125 KFTNPDDVLLFTHRFDGYTFLDSKGAEFLALVEYAPFQKLPKNRSRSKPDPKCNTIESDP 184
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSG--APKETLVVTPLMEYVRQKR 171
++ F K A E Q R E S P+E +V+TPL+E+V Q++
Sbjct: 185 LFIAF-----KEALEEEEREAQQGRGTQEFSFNLEPEEKIVMTPLLEFVAQRK 232
>gi|443693452|gb|ELT94809.1| hypothetical protein CAPTEDRAFT_137621, partial [Capitella teleta]
Length = 172
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 96/175 (54%), Gaps = 18/175 (10%)
Query: 9 KVVIRHLPPSLSQNDLLAL---FRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
++V+R LPPSL+ + + L DH ++F F S Q ++RAY+
Sbjct: 1 QIVVRRLPPSLTAEEFIDLTSPIPDH-----DFFYFTQDNSKM----GEQAFTRAYINFV 51
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLE 124
+ F E +G++FV++KG +F A+VE+AP Q+VPK +RK D + TI DPD+L+
Sbjct: 52 SYEDILIFQEKFDGYIFVDQKGNEFPAVVEFAPFQKVPKKKTRKPDVKMATIENDPDFLK 111
Query: 125 FLK-VIAKPAENLPSAEIQLERKEA---ELSGAPKETLVVTPLMEYV-RQKRAAE 174
FL + K +E+ P+ + LE EA EL G ++ + Y+ R++R+ E
Sbjct: 112 FLDGLDQKSSESAPAVDTILEEIEAKERELKGQSSSSVWRFIITHYICREQRSIE 166
>gi|302682602|ref|XP_003030982.1| hypothetical protein SCHCODRAFT_109867 [Schizophyllum commune H4-8]
gi|300104674|gb|EFI96079.1| hypothetical protein SCHCODRAFT_109867, partial [Schizophyllum
commune H4-8]
Length = 502
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
K+V+R LPP+L ++ + ++ +W + PGK K SRAY+ K
Sbjct: 102 KIVVRRLPPNLPESIFWESVQAWVSEETVSWRTYWPGKMRS-RPDKENVPSRAYIVFKTD 160
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLK 127
V F + +GH+F ++ G +F+A+VE+AP Q+VP + D R GTI KD DY+ FL+
Sbjct: 161 EQVAIFGKEYDGHLFRDKAGNEFQAVVEFAPYQKVPSEKKKVDVRAGTIEKDEDYISFLE 220
Query: 128 VIAKPAENLPSAEIQLERKEAELSGA-PKETLVVTPLMEYVR 168
+ P + P + +E A ++ P TPL+EY++
Sbjct: 221 SLNAPTSSEP---VTMESLRAHIAATRPPSPPKTTPLLEYLK 259
>gi|332030560|gb|EGI70248.1| Regulator of nonsense transcripts 3A [Acromyrmex echinatior]
Length = 596
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 27/172 (15%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFC---FRPGKSSFFYSYKHQRYSRAYVEL 64
TKVVIR LPPS++Q+ L Y +F G+ SF SRAY+
Sbjct: 45 TKVVIRRLPPSMTQDQFLEQVSPLPVHDYLYFVKADMSLGQFSF---------SRAYINF 95
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDY 122
+ +F F E + +VF++ KG ++ A+VE+AP QR+PK +KD + GTI D Y
Sbjct: 96 VEQQDIFMFREKFDNYVFLDSKGVEYPAVVEFAPFQRLPKKRMGKKKDVKCGTIESDSYY 155
Query: 123 LEFLKVIAKPAENLPSAEIQ--LERKEAELSGAPKETLV----VTPLMEYVR 168
+ FL ENL + EI + + + E S P + V TPL+EY++
Sbjct: 156 ISFL-------ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKITTTPLLEYLK 200
>gi|350408566|ref|XP_003488445.1| PREDICTED: hypothetical protein LOC100743974 isoform 1 [Bombus
impatiens]
gi|350408569|ref|XP_003488446.1| PREDICTED: hypothetical protein LOC100743974 isoform 2 [Bombus
impatiens]
Length = 620
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP+++Q L Y +F K+ S +SRAY+ +
Sbjct: 40 TKVVIRRLPPTMTQEQFLEQVSPLPEHDYLYFV----KADM--SLGQYAFSRAYINFVEQ 93
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDPDYLEF 125
+F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + GTI D Y+ F
Sbjct: 94 QDIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCGTIESDSYYISF 153
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
L+ + AE + + + E S P + + TPL+EYV+Q++
Sbjct: 154 LESLKN-----QEAESNVSQPKTEYSYQPPDNTPKKVTTTPLLEYVKQRK 198
>gi|46109162|ref|XP_381639.1| hypothetical protein FG01463.1 [Gibberella zeae PH-1]
Length = 641
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 16/174 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+ IR LPP +++ + ++ + + +WFCF GK S S K R RAYV +
Sbjct: 50 KLTIRRLPPGMTEAEFASILGSEWEVGKGKVDWFCFAEGKISTDPS-KPSRPGRAYVHVM 108
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAI-------VEYAPSQRVPKPFSRKDSREGTIFK 118
+ + +E + V+ + K A F + ++ A ++VP R D+R+GTI +
Sbjct: 109 RKDDILPLSEAVRNAVWEDAK-ASFNSPSLIGPPGLDIAIYKKVPSAKKRTDARQGTIDQ 167
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
DPD++ FL+ +A P P E +E +E + G + + TPL+EY+++K+A
Sbjct: 168 DPDFMAFLEELANP---TPPKET-VEGEEGDDFGKSENKVTTTPLIEYLKEKKA 217
>gi|255930133|ref|XP_002556626.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581239|emb|CAP79003.1| Pc06g00100 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 554
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K++IR LPP L+Q++L + D + +W ++PGK S + K R S
Sbjct: 32 KPPAPRLKLLIRRLPPGLTQSELESALGDQWKAGAGNVDWLQYKPGKVSKDPN-KPSRPS 90
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAY+ + V ++ + F + + I+ E+AP + P SRKD+R
Sbjct: 91 RAYIHVVSTECVSSLSDAVRRASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDAR 150
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+GTI +D D++ FL+ + +P + + + ++ + KET++ TPL+++++ K+A
Sbjct: 151 QGTIDQDSDFIAFLESLTQPITKPAAVDSAADGEDKK-----KETIMTTPLVQFIKDKKA 205
Query: 173 AE 174
++
Sbjct: 206 SK 207
>gi|240277371|gb|EER40879.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H143]
Length = 452
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 28/252 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KV+IR LPP L+ + +A+ D + N + +WF F+ GK F K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKV-FKDPAKPSRPTRAYLRVT 97
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKD 119
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 98 SIPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLD 157
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 179
D++ FL+ + P + + KE E +TPL++++++KRA + +E
Sbjct: 158 SDFITFLESLTNPVTKSVADIAADDTKE--------EKPTITPLIQFLKEKRANK--GKE 207
Query: 180 SLAVGRVGRRSRAASASKTSSTT-TKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQ 238
+ + R R S A A S+ +KR S K ++K A K AK Q
Sbjct: 208 TSSPARPSRHSEADGAPVHSNEDGSKRTSTK-------ASKEAESTRKPALAKQAKGALQ 260
Query: 239 PASSSGKETSAS 250
P++ +G+ TS S
Sbjct: 261 PSAVTGRNTSKS 272
>gi|195489365|ref|XP_002092707.1| GE11515 [Drosophila yakuba]
gi|194178808|gb|EDW92419.1| GE11515 [Drosophila yakuba]
Length = 492
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 41/184 (22%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
Q K+V+RHLPP++++ D L D ND Y ++C +S H+ RA
Sbjct: 28 QIVKIVMRHLPPTMTEADFL----DQVGPLPENDSY-YYC------KADWSLGHEATCRA 76
Query: 61 YVEL--KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIF 117
Y+++ K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI
Sbjct: 77 YIDMSSKDITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIE 136
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 167
+P Y EF+K +A+ ER+EA G K E + TPL++Y+
Sbjct: 137 SEPHYQEFIKRLAE------------EREEASRMGDVKIDFNFDRRTDEKVKSTPLLQYL 184
Query: 168 RQKR 171
K+
Sbjct: 185 ANKK 188
>gi|410914359|ref|XP_003970655.1| PREDICTED: regulator of nonsense transcripts 3B-like [Takifugu
rubripes]
Length = 452
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 94/167 (56%), Gaps = 14/167 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPPSL++ +L + ++ F +S F ++RAY+ +
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPLPE--VDYLEFFSNDTSLFPHL----FARAYINFRNQ 89
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFL 126
+ F + +G+VF++++G ++ A+VE+AP Q+ K ++K D++ GTI +DP+Y +FL
Sbjct: 90 EDIVLFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRNKKRDAKCGTIIEDPEYKKFL 149
Query: 127 KVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
+ E L S+ EI LE EL KE + TPL+++++ K
Sbjct: 150 EYYNGDEEKLTSSPEILLE----ELEAKSKELVAKKSTPLLDFLKNK 192
>gi|154310975|ref|XP_001554818.1| hypothetical protein BC1G_06466 [Botryotinia fuckeliana B05.10]
gi|347832513|emb|CCD48210.1| hypothetical protein [Botryotinia fuckeliana]
Length = 624
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 16/176 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
+ K+++R L P L++ + + D + + +WF ++PGK S S K R SRAY+
Sbjct: 38 KMKLIVRRLAPGLTEAEFCSSLGDEWKVGQGKVDWFQYKPGKDSKDPS-KPSRPSRAYLH 96
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRK-DSREGTI 116
L + F++++ F + K + VE+AP RVP R+ D+R GTI
Sbjct: 97 LTNSDHLLPFSDVVRKSSFEDAKNTYTNSCLIGPPTVEFAPYSRVPAGLKRRTDARAGTI 156
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DP+++ FL+ +A P + + E+ E ++A A E + +TPL+++++ K+A
Sbjct: 157 DQDPEFMAFLEGLANP---VTTKEVGAEGEDAPTGKA--EKVTITPLVQFLKDKKA 207
>gi|195382487|ref|XP_002049961.1| GJ21877 [Drosophila virilis]
gi|194144758|gb|EDW61154.1| GJ21877 [Drosophila virilis]
Length = 484
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 127/257 (49%), Gaps = 63/257 (24%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
Q K+V+RHLPP++++ + L D ND Y ++C P +S + RAY++
Sbjct: 18 QSIKIVVRHLPPTMTEKEFLEQV-DPLPENDSY-YYC--PAD----WSLGQEATCRAYID 69
Query: 64 --LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDP 120
LK A V +F + +G+VFV+ KGA++ AIVEYAP Q K +R D++ TI K+P
Sbjct: 70 MSLKDIAEVLQFRDRFDGYVFVDSKGAEYVAIVEYAPFQCFLKNKARSHDNKVNTIEKEP 129
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV--- 167
+ EFL+ +A+ ER+EA G K E + TPL++Y+
Sbjct: 130 HFQEFLQKLAE------------EREEATRLGDIKIDFTFENRGDEKVKSTPLLQYLANK 177
Query: 168 RQKRAAESGAQ--------------------ESLAVGRVGRRSRAASASKTSSTTTKRGS 207
++KR E+ + E++ V G ++ K+ ++ K+G
Sbjct: 178 KEKRREEARKRNEEKRKHREEQKLLRSTEQPENIKVKDSGNENK-----KSLNSNAKKGF 232
Query: 208 EKKKYILKDSAKNARRK 224
K+ + +D+AKNAR K
Sbjct: 233 NKEGQLPEDTAKNARSK 249
>gi|119472065|ref|XP_001258263.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
gi|119406415|gb|EAW16366.1| nonsense-mediated mRNA decay protein Upf3, putative [Neosartorya
fischeri NRRL 181]
Length = 579
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+++R LPP L+Q++ + + +W+ ++PGK S Y+ K R S
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENALGSEWMVGAGKVDWYQYKPGKVSKDYA-KPSRPS 92
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAY+ + + ++ + F++ + ++ E+AP ++P RKD+R
Sbjct: 93 RAYIHVTSSEHIAPLSDKIRQTSFLDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDAR 152
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+GTI +DP+++ FL+ + +P + E + +E KET+ TPL++Y+
Sbjct: 153 QGTIDQDPEFIAFLESLTQPITKPTTVETPTDAEEK------KETVTTTPLVQYI 201
>gi|350638598|gb|EHA26954.1| hypothetical protein ASPNIDRAFT_205576 [Aspergillus niger ATCC
1015]
Length = 587
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSS--FFYS-YKHQRYSRA 60
R K+++R LPP L+Q + + + +WF ++PGK S YS K R SRA
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDMLYSPAKPSRPSRA 98
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREG 114
Y+ + + + F++ + ++ E+AP ++ SRKD+R+G
Sbjct: 99 YIHVMSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQG 158
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
TI +DP+++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 159 TIDQDPEFIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 210
>gi|224136045|ref|XP_002327367.1| predicted protein [Populus trichocarpa]
gi|222835737|gb|EEE74172.1| predicted protein [Populus trichocarpa]
Length = 123
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 14/106 (13%)
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQ---------LERKEA--ELSGAPKET--LVVTPLME 165
DPDYLEFLK+IAKPA NLP AEIQ L +K ELS A KET + TPLME
Sbjct: 9 DPDYLEFLKLIAKPARNLPCAEIQDAEESGQIYLLKKFVLKELSEATKETPISISTPLME 68
Query: 166 YVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK 211
+VRQKRA + G + S AV + G+R+ +AS + + S++TKRGS KK
Sbjct: 69 FVRQKRADKGGNKGS-AVVKGGKRAGSASPTNSGSSSTKRGSATKK 113
>gi|358370682|dbj|GAA87292.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus kawachii IFO
4308]
Length = 584
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S + K R SRAY+
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWRVGGGKVDWFQYKPGKVSKDPA-KPSRPSRAYIH 97
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ + + F++ + ++ E+AP ++ SRKD+R+GTI
Sbjct: 98 VMSSDHTIPLSNKVRQTSFIDARNTSNDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTID 157
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DP+++ FL+ + +P P + + ++ KET+ VTPL++Y+R+K+A
Sbjct: 158 QDPEFIAFLESLTQPLAKPPPVDSGADGEDK------KETVTVTPLVQYIREKKA 206
>gi|159124599|gb|EDP49717.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus A1163]
Length = 577
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+++R LPP L+Q++ + + +W+ ++PGK S Y+ K R S
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYA-KPSRPS 92
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAY+ + + ++ + FV+ + ++ E+AP ++P RKD+R
Sbjct: 93 RAYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDAR 152
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+GTI +DP+++ FL+ + +P + + + +E KET+ TPL++Y+
Sbjct: 153 QGTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEEK------KETVTTTPLVQYI 201
>gi|70992361|ref|XP_751029.1| nonsense-mediated mRNA decay protein Upf3 [Aspergillus fumigatus
Af293]
gi|66848662|gb|EAL88991.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
fumigatus Af293]
Length = 581
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+++R LPP L+Q++ + + +W+ ++PGK S Y+ K R S
Sbjct: 34 KPPAPRLKLLVRRLPPGLTQSEFENAMGPEWMVGAGKVDWYQYKPGKVSKDYA-KPSRPS 92
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAY+ + + ++ + FV+ + ++ E+AP ++P RKD+R
Sbjct: 93 RAYIHVTSSEHIAPLSDKVRQTSFVDARNTFNDPVLLGPPSLEFAPYAKIPGSRVRKDAR 152
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+GTI +DP+++ FL+ + +P + + + +E KET+ TPL++Y+
Sbjct: 153 QGTIDQDPEFIAFLESLTQPITKPTTVDTPTDAEEK------KETVTTTPLVQYI 201
>gi|157137885|ref|XP_001664060.1| hypothetical protein AaeL_AAEL003735 [Aedes aegypti]
gi|108880729|gb|EAT44954.1| AAEL003735-PA, partial [Aedes aegypti]
Length = 514
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 4 PLQRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
P TKVVIR LPPS+ + + DH + F F G +S SRA
Sbjct: 80 PRPLTKVVIRRLPPSMDEETFRKQIEPMPDH-----DDFYFVSGD----WSLGKNASSRA 130
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKD 119
Y+ K ++ F + +G++FV+ KG ++ A+VE+AP Q +P+ SR KD + GTI D
Sbjct: 131 YINFTKAEDIYLFKDKFDGYIFVDAKGVEYPAVVEFAPFQELPRNRSRKKDIKCGTIETD 190
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+L F + + AE +A + E +E + TPL+EY+ QK+
Sbjct: 191 THFLAFKEALE--AEEKDTAGKSKSKLEYTYKIKDEEKITSTPLLEYIAQKK 240
>gi|320461533|ref|NP_001189377.1| regulator of nonsense transcripts 3A [Danio rerio]
Length = 478
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSLS++ L ++H + +++F F P S Y H +SRAY+ K
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSL---YPHL-FSRAYINFK 94
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
P + F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y
Sbjct: 95 NPEDIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRR 154
Query: 125 FLKVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ + E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 155 FLENYSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKNKK 200
>gi|392578399|gb|EIW71527.1| hypothetical protein TREMEDRAFT_60453 [Tremella mesenterica DSM
1558]
Length = 423
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 70/134 (52%), Gaps = 3/134 (2%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
P RTK+VIR LPP+L + ++ W + GK++ + RYSRAY
Sbjct: 10 PPHRTKLVIRRLPPTLPEEIFWTSVSQWVDESCVWRRYVKGKAA--DGGERARYSRAYCL 67
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
L V F NGHV+ ++ G +++A+VE AP Q+ P + D R+GT+ DPDY+
Sbjct: 68 LPDEQAVI-FRTDFNGHVYRSKAGEEYQALVEPAPLQKTPNKLKKIDVRQGTVETDPDYI 126
Query: 124 EFLKVIAKPAENLP 137
F+ ++ E P
Sbjct: 127 SFINALSGSPEPPP 140
>gi|322710626|gb|EFZ02200.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
anisopliae ARSEF 23]
Length = 664
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 110/216 (50%), Gaps = 32/216 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+VIR LPP ++ + +++ + + +WF + PGK S S K R RAYV L
Sbjct: 89 KLVIRRLPPGMTMEEFISILGPEWEMSKGKVDWFSYVPGKISIDPS-KPSRPGRAYVHLV 147
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFK 118
+ + +E++ + + K + F ++E++ ++VP R D+R+GTI +
Sbjct: 148 RKDDIMPLSEVVRNATWEDAK-STFTNPSLIGPPVLEFSIYKKVPGTKKRTDTRQGTIDQ 206
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA------ 172
DP+++ FL+ +A PA S +++ +A+ S + + TPL+E++++K+A
Sbjct: 207 DPEFMAFLEGLANPAPMRESIDVE----DADESAKVEVKVTTTPLVEFLKEKKANRGKDG 262
Query: 173 ---------AESGAQESLAVGR-VGRRSRAASASKT 198
+SGA++ + GR G+ SR KT
Sbjct: 263 SGKNSKSGKGKSGAKDDDSFGRKKGKESRTEKQDKT 298
>gi|229891778|sp|B0S733.2|REN3A_DANRE RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A
Length = 452
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSLS++ L ++H + +++F F P S Y H +SRAY+ K
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSL---YPHL-FSRAYINFK 94
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
P + F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y
Sbjct: 95 NPEDIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRR 154
Query: 125 FLKVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ + E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 155 FLENYSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKNKK 200
>gi|154270398|ref|XP_001536054.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409981|gb|EDN05369.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 542
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KV+IR LPP L+ + +A+ D + N + +WF F+ GK F K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKD-FKDPAKPSRPTRAYLRVT 97
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKD 119
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 98 SIPLVDELSEKVRVSAFQDGRNTSRDPILIGPPSLEYAPYPRVPGSRVRKDGRQGTIDLD 157
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 179
D++ FL+ + P + + KE E +TPL++++++KRA + +E
Sbjct: 158 SDFITFLESLTNPVTKSVADIAADDTKE--------EKPAITPLIQFLKEKRANK--GKE 207
Query: 180 SLAVGRVGRRSR 191
+ + R R SR
Sbjct: 208 TSSPARSSRHSR 219
>gi|303318159|ref|XP_003069079.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108765|gb|EER26934.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 600
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 22/196 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S S K + SRAY+
Sbjct: 42 RLKLLVRRLPPGLTQAEFETALGPAWTVGKGKLDWFAYKPGKLSADPS-KPSKPSRAYLR 100
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTI 116
+ A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 101 VTASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTI 159
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 176
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A S
Sbjct: 160 DQDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKA--SK 209
Query: 177 AQESLAVGRVGRRSRA 192
A+E+ A R + SR+
Sbjct: 210 AKEASAPARATKPSRS 225
>gi|410896456|ref|XP_003961715.1| PREDICTED: regulator of nonsense transcripts 3A-like [Takifugu
rubripes]
Length = 458
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 97/170 (57%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
TKVV+R LPP+LS++ L +H + +++F F P S Y H +SRAY+ K
Sbjct: 46 TKVVLRRLPPNLSKDQL----EEHLSPLPPFDYFEFFPADQSL---YPHL-FSRAYINFK 97
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
P + F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y
Sbjct: 98 NPEDILLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKR 157
Query: 125 FLKVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ I+ E ++ + E L E+ +E + TPL+EY++ K+
Sbjct: 158 FLENISCDEEKSMANPETLL----GEIEAKTRELIARRTTPLLEYIKNKK 203
>gi|119176142|ref|XP_001240195.1| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 600
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S S K + SRAY+
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPS-KPSKPSRAYLR 100
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTI 116
+ A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 101 VTASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTI 159
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 176
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A +
Sbjct: 160 DQDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKAGK-- 209
Query: 177 AQESLAVGRVGRRSRAAS 194
A+E+ A R + SR+ +
Sbjct: 210 AKEASAPARATKPSRSGA 227
>gi|392864553|gb|EAS27556.2| hypothetical protein CIMG_09816 [Coccidioides immitis RS]
Length = 629
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 22/196 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S S K + SRAY+
Sbjct: 71 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWFAYKPGKLSADPS-KPSKPSRAYLR 129
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTI 116
+ A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 130 VTASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTI 188
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 176
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A +
Sbjct: 189 DQDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKAGK-- 238
Query: 177 AQESLAVGRVGRRSRA 192
A+E+ A R + SR+
Sbjct: 239 AKEASAPARATKPSRS 254
>gi|356522136|ref|XP_003529705.1| PREDICTED: regulator of nonsense transcripts 3A-like [Glycine max]
Length = 72
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREG 114
+SRAY++ K P VFEF E +GHVFVNE+GAQ+K IVEYAPSQRVPKP ++K +G
Sbjct: 2 HSRAYIDFKCPDDVFEFTEFFDGHVFVNERGAQYKVIVEYAPSQRVPKPSAKKMDVKG 59
>gi|425775443|gb|EKV13712.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum PHI26]
gi|425783735|gb|EKV21562.1| Nonsense-mediated mRNA decay protein Upf3, putative [Penicillium
digitatum Pd1]
Length = 551
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K++IR LPP L++ +L D + +W F+PGK S K R S
Sbjct: 32 KPPAPRLKLLIRRLPPGLTRAELENSLGDQWKAGAGNVDWLQFKPGKVSK-DPNKSSRPS 90
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAYV + V ++ + F + + I+ E+AP + P SRKD+R
Sbjct: 91 RAYVHVVSTECVSSLSDAVRQASFQDARNTLHDPILLGPPSLEFAPYAKTPGSRSRKDAR 150
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+GTI +D +++ FL+ + +P + + A+ KET+V TPL+++++ K+A
Sbjct: 151 QGTIDQDSEFIAFLESLTQPITRPAAVD-----STADCEDKKKETIVTTPLVQFIKDKKA 205
Query: 173 AE 174
++
Sbjct: 206 SK 207
>gi|47220145|emb|CAG07286.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 97/169 (57%), Gaps = 18/169 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+VV+R LPPSL+++ L +H + +++F F P S Y H +SRAY+ K
Sbjct: 3 QVVLRRLPPSLTKDQL----EEHLSPLPPFDYFEFFPADQSL---YPHL-FSRAYINFKN 54
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y F
Sbjct: 55 PDDILLFRDRFDGYVFIDSKGQEYAAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRF 114
Query: 126 LKVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ I+ E +L + EI L E+ +E + TPL+EY++ K+
Sbjct: 115 LENISCDEEKSLANPEILL----GEIEAKTRELIARRTTPLLEYIKNKK 159
>gi|301781170|ref|XP_002926002.1| PREDICTED: regulator of nonsense transcripts 3A-like [Ailuropoda
melanoleuca]
Length = 495
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L R +++F F SS Y H YSRAY+ + P
Sbjct: 79 SKVVIRRLPPSLTKEQLEEQLRPL--PAHDYFEFFTADSSL---YPHL-YSRAYINFRNP 132
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q K RKD++ G+I DP+Y +FL
Sbjct: 133 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFL 192
Query: 127 KVIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ KP N + +E K EL TPL+EY+R ++
Sbjct: 193 ETYCVEEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 236
>gi|325093450|gb|EGC46760.1| nonsense-mediated mRNA decay protein [Ajellomyces capsulatus H88]
Length = 579
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 20/192 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KV+IR LPP L+ + +A+ D + N + +WF F+ GK F K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKIDWFRFKEGKV-FKDPAKPSRPTRAYLRVT 97
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKD 119
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 98 SIPLVDELSEKVRVSAFQDGRNTGRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLD 157
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 179
D++ FL+ + P + + KE E +TPL++++++KRA + +E
Sbjct: 158 SDFITFLESLTNPVTKSVADIAADDTKE--------EKPTITPLIQFLKEKRANK--GKE 207
Query: 180 SLAVGRVGRRSR 191
+ + R R SR
Sbjct: 208 TSSPARPSRHSR 219
>gi|348528186|ref|XP_003451599.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oreochromis
niloticus]
Length = 464
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP+LS+ L + Y++F F P S Y H +SRAY+ K P
Sbjct: 46 TKVVIRRLPPNLSKEQLEEQLSPLPS--YDYFEFFPADQSL---YPHL-FSRAYINFKNP 99
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL
Sbjct: 100 EDILLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFL 159
Query: 127 KVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E ++ + E L E+ KE + TPL+EY++ K+
Sbjct: 160 ENYSCDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKNKK 203
>gi|225556833|gb|EEH05120.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 579
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 20/192 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KV+IR LPP L+ + +A+ D + N + +WF F+ GK F K R +RAY+ +
Sbjct: 39 KVLIRRLPPGLTAQEFVAVLGDEWKVGNGKVDWFRFKEGKV-FKDPAKPSRPTRAYLRVT 97
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIFKD 119
V E +E + F + + I+ EYAP RVP RKD R+GTI D
Sbjct: 98 SIPLVDELSEKVRVSAFQDGRNTSRDPILLGPPSLEYAPYPRVPGSRVRKDGRQGTIDLD 157
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQE 179
D++ FL+ + P A+I + +E +TPL++++++KRA + +E
Sbjct: 158 SDFITFLESLTNPVTKS-VADIAADDTR-------EEKPTITPLIQFLKEKRANK--GKE 207
Query: 180 SLAVGRVGRRSR 191
+ + R R SR
Sbjct: 208 TSSPARPSRHSR 219
>gi|168015195|ref|XP_001760136.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688516|gb|EDQ74892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 259
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Query: 109 KDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPL 163
KD EG I+KDPDYL F++ +AKPAE LP EIQLER+EAE ++G K+ +VVTPL
Sbjct: 7 KDVGEGIIYKDPDYLAFMQQLAKPAEYLPRVEIQLERREAEKAASIVAGTSKDVVVVTPL 66
Query: 164 MEYVRQKRAAESGAQESLA 182
+ VR RAA+ +Q S++
Sbjct: 67 TDLVRSLRAAKFTSQRSMS 85
>gi|317026432|ref|XP_001389592.2| nonsense-mediated mRNA decay protein Upf3 [Aspergillus niger CBS
513.88]
Length = 582
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 16/175 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S + K R SRAY+
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVSKDPA-KPSRPSRAYIH 97
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ + + F++ + ++ E+AP ++ SRKD+R+GTI
Sbjct: 98 VMSSDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTID 157
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DP+++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 158 QDPEFIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 206
>gi|336262497|ref|XP_003346032.1| hypothetical protein SMAC_08533 [Sordaria macrospora k-hell]
gi|380087600|emb|CCC05281.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 813
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVV+R LPP L++ + + D + + + +WF + PGKSS S + R +RAY +
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKMGHGKVDWFSYWPGKSSQHPS-RPSRPTRAYFHVI 96
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIFKD 119
K + ++ + V+ + K + + VE + +++P R D+R+GTI ++
Sbjct: 97 KKDDLISLSQAVQNGVWEDAKESYNDPVLILPPTVELSIHKKIPSDKKRLDNRQGTIDQE 156
Query: 120 PDYLEFLKVIAKP--AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
P+++ FL+ +A P +N SA E E +G P E + TPL+EY+++K+A
Sbjct: 157 PEFMAFLESLANPDAHKNTDSA---GEANAEEPTGKP-EKVTTTPLVEYLKEKKA 207
>gi|322701830|gb|EFY93578.1| nonsense-mediated mRNA decay protein Upf3, putative [Metarhizium
acridum CQMa 102]
Length = 660
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 32/222 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+VIR LPP +++ + +++ + + +WF + PGK S S K R RAYV L
Sbjct: 88 KLVIRRLPPGMTKEECISILGPEWEISKGKVDWFSYVPGKISIDPS-KPSRPGRAYVHLV 146
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFK-------AIVEYAPSQRVPKPFSRKDSREGTIFK 118
+ + ++++ + + K + F ++E++ ++VP R D+R+GTI +
Sbjct: 147 RKDDIMPLSDVVRNATWEDAK-STFTNPSLIGPPVLEFSIYKKVPGTKKRTDARQGTIDQ 205
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA------ 172
DP+++ FL+ +A PA S +++ +A+ S + + TPL+E++++K+A
Sbjct: 206 DPEFMAFLEGLANPAPMRDSIDVE----DADESAKVEVKVTTTPLVEFLKEKKANRGKDG 261
Query: 173 ---------AESGAQESLAVGR-VGRRSRAASASKTSSTTTK 204
+SGA++ + GR G+ SR KT K
Sbjct: 262 SGKNSKSAKGKSGAKDDDSSGRKKGKESRTEKQDKTPKENVK 303
>gi|358397022|gb|EHK46397.1| hypothetical protein TRIATDRAFT_43507 [Trichoderma atroviride IMI
206040]
Length = 626
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 110/211 (52%), Gaps = 21/211 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P + KV+IR LPP L++ + L++ + N + +W + PGK S K R S
Sbjct: 43 KTPHEGEKVIIRRLPPGLTEAEFLSILGSEWAVGNGKVDWSSYAPGKVCNEIS-KPSRPS 101
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDS 111
RAY+ + + + ++++ + + + + F + +E + ++VP R D+
Sbjct: 102 RAYLHVMRKDYIMPLSDIVRNAAWEDAR-STFNSPSLIGPPALEISIYKKVPGNKKRVDA 160
Query: 112 REGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
R+GTI +DP+++ FL+ +A P + EI E+ A + + TPL+EY+++K+
Sbjct: 161 RQGTIDQDPEFMAFLEGLANPVQ---PKEIT---DNEEVEDAAETKVTTTPLIEYLKEKK 214
Query: 172 AAESGAQESLAVGRVGRRSRAASASKTSSTT 202
A + Q+ A + + SR +A+K ST+
Sbjct: 215 ANK---QKEAASAKSAKHSREGAATKGKSTS 242
>gi|320031755|gb|EFW13714.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 599
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +W ++PGK S S K + SRAY+
Sbjct: 42 RLKLLVRRLPPGLTQVEFETALGPEWTVGKGKLDWLAYKPGKLSADPS-KPSKPSRAYLR 100
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQF-------KAIVEYAPSQRVPKPFSRKDSREGTI 116
+ A V E ++ + F + + F +EYAP RVP RKD+R GTI
Sbjct: 101 VTASAIVPELSDRVRETSFQDSRNT-FADPALLGPPTLEYAPYPRVPGGKVRKDARMGTI 159
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 176
+DP+++ FL+ + P + +I K+ E + +TPL++Y++ K+A S
Sbjct: 160 DQDPEFIAFLESLTNPVPKPSTDDIVEPDKD--------EKITITPLIQYLKDKKA--SK 209
Query: 177 AQESLAVGRVGRRSRAAS 194
A+E+ A R + SR+ +
Sbjct: 210 AKEASAPARATKPSRSGA 227
>gi|358378266|gb|EHK15948.1| hypothetical protein TRIVIDRAFT_184401 [Trichoderma virens Gv29-8]
Length = 625
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 18/174 (10%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
P + KV+IR LPP +++ + L++ + + + +WF + PGK+S S K R +RA
Sbjct: 44 PHEGEKVIIRRLPPGMTEAECLSILGSEWAVGSGKVDWFSYAPGKASNELS-KPSRPARA 102
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSRE 113
Y+ + + + +E++ + + K F + +E + ++VP R D+R+
Sbjct: 103 YLHVMRKDYIMPLSEVVRSATWEDAK-CTFNSSSLIGPPALEMSIYKKVPGTKKRVDARQ 161
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
GTI +DP+++ FL+ +A PA P I+ E ++ AP+ + TPL+EY+
Sbjct: 162 GTIDQDPEFMAFLEGLANPAP--PREGIENE----DVEEAPETKVTTTPLIEYL 209
>gi|237830905|ref|XP_002364750.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
gi|211962414|gb|EEA97609.1| smg-4/UPF3 family domain protein [Toxoplasma gondii ME49]
Length = 595
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+TKVV+R LPPS + DLL L + +W F PG+ S R S YV
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGRQQ--KSDVPSRNSTWYVNFST 341
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 126
+F + +G VFV+E+ FKA+ AP Q+VP+ D REG++ KDP Y+ FL
Sbjct: 342 EEDADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRKTG-PDRREGSLAKDPLYVNFL 400
Query: 127 KVI 129
+ +
Sbjct: 401 QAL 403
>gi|291239911|ref|XP_002739866.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B-like
[Saccoglossus kowalevskii]
Length = 626
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 88/173 (50%), Gaps = 24/173 (13%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKV+IR LPPS ++ + N+F F S + +SR Y+ + K
Sbjct: 31 TKVIIRRLPPSFTEETFKEAL--EYLPHNNYFHFVKADRSLGPNA----FSRVYINIVKQ 84
Query: 68 AGVFEFAE------LLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDP 120
+ F + L ++ + G +F A+VE AP Q++PK +K D + G+I DP
Sbjct: 85 EDIIAFRDNHSLDKLTMTYIPL---GEEFPAVVELAPYQKIPKKALKKPDVKSGSIEDDP 141
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEA-----ELSGAPKETLVVTPLMEYVR 168
DY++FL+ + E LPSAE LE EA E +G K+T TPL+EY+R
Sbjct: 142 DYVKFLESLNAEVEPLPSAESYLEEIEAKERELEAAGPQKKT---TPLIEYIR 191
>gi|342882704|gb|EGU83304.1| hypothetical protein FOXB_06155 [Fusarium oxysporum Fo5176]
Length = 663
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+VIR LPP ++Q + +++ + + +WF F GK S S K R RAYV +
Sbjct: 77 KLVIRRLPPGMTQAEFVSILGSEWELGKGKVDWFSFAGGKISTDPS-KPSRPGRAYVHVM 135
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKDSREGTIFK 118
K + ++ + V+ + K A F + VE+A ++VP R D+R+GTI +
Sbjct: 136 KKDDILPLSDAVRTAVWEDAK-ASFNSPSLIGPPSVEFAIYKKVPSNKKRTDARQGTIDQ 194
Query: 119 DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
DP+++ FL+ +A PA P E +E +E + G + + TPL+EY+
Sbjct: 195 DPEFMAFLEELANPA---PPKET-VEGEEGDDLGKVETKVTTTPLIEYL 239
>gi|47226207|emb|CAG08354.1| unnamed protein product [Tetraodon nigroviridis]
Length = 503
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 95/168 (56%), Gaps = 16/168 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPPSL++ +L + ++ F +S F ++RAY+ +
Sbjct: 37 TKIVIRRLPPSLTKEELKEQLQPL--PEVDYLEFFSNDTSLFPHL----FARAYINFQNQ 90
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFL 126
+ F + +G+VF++++G ++ A+VE+AP Q+ K S+K D++ GTI +DP+Y +FL
Sbjct: 91 EDIVLFRDRFDGYVFIDKRGQEYPAVVEFAPFQKTAKKRSKKRDAKCGTINEDPEYKKFL 150
Query: 127 KVIAKPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQK 170
+ E S+ EI LE EA EL GA K TPL+++++ K
Sbjct: 151 EFYNGDEEKFTSSPEILLEELEAKSKEL-GAKK----STPLLDFLKNK 193
>gi|342320545|gb|EGU12485.1| Hypothetical Protein RTG_01519 [Rhodotorula glutinis ATCC 204091]
Length = 444
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 26/181 (14%)
Query: 6 QRTKVVIRHLPPSLSQNDLL-----ALFRDHFND-------RYNWFCFRPGKSSFFYSYK 53
QR K+V+R LPP L + R+ +D + W ++ GK K
Sbjct: 14 QRLKLVVRRLPPDLPPAVFWKTVSPWVTREDVDDEGQEGAEKVVWSEYKQGKVRRSGKDK 73
Query: 54 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 113
SRAY+ + P + F+ +G F ++ G +A+VE+AP QR+P ++ D R+
Sbjct: 74 DSVQSRAYITFRTPDALVAFSRGYDGWSFRDKTGNVSQAVVEFAPYQRIPTAPAKADPRQ 133
Query: 114 GTIFKDPDYLEFLKVI-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
GTI DPD+L F + + A PA P+ + K TPL+EY+RQ++A
Sbjct: 134 GTIDDDPDFLAFQEALTAAPATPQPAETPAVNPKS-------------TPLLEYLRQQKA 180
Query: 173 A 173
A
Sbjct: 181 A 181
>gi|341038519|gb|EGS23511.1| hypothetical protein CTHT_0002050 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 805
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 19/180 (10%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P Q K+VIR LPP +++++ L + D + N + +W F PGK S S K R +
Sbjct: 29 KPPPQGEKIVIRRLPPGMTEDEFLKILGDEWKPGNGKVDWLTFWPGKVSQHPS-KPSRPA 87
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQ------FKAIVEYAPSQRVPKPFSRKDSR 112
RAY+ + + + + + G + + K VE+A +++P R DS+
Sbjct: 88 RAYLHVIQRDLLPALLQTVQGAKWEDAKATWDDPALISPPTVEFAVYKKIPGDKKRVDSK 147
Query: 113 EGTIFKDPDYLEFLKVIAKP---AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+GTI DP+++ FL+ +A P E P E E A + TPL+EY+++
Sbjct: 148 QGTIDSDPEFMAFLEALANPDAVKETRPELETSAEE------AAKNAVVTTTPLIEYLKE 201
>gi|221507633|gb|EEE33237.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 588
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+TKVV+R LPPS + DLL L + +W F PG+ S R S YV
Sbjct: 284 KTKVVVRLLPPSAREEDLLELVAAPLQGKMSWTRFVPGRQQ--KSDVPSRNSTWYVNFST 341
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 126
+F + +G VFV+E+ FKA+ AP Q+VP+ D REG++ KDP Y+ FL
Sbjct: 342 EEDADDFIKSFHGKVFVDERHNTFKAVARLAPYQKVPRKTG-PDRREGSLAKDPLYVNFL 400
Query: 127 KVI 129
+ +
Sbjct: 401 QAL 403
>gi|209529640|ref|NP_001129345.1| regulator of nonsense transcripts 3B [Rattus norvegicus]
Length = 472
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +
Sbjct: 103 NQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|149060022|gb|EDM10838.1| UPF3 regulator of nonsense transcripts homolog B (yeast)
(predicted) [Rattus norvegicus]
Length = 485
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +
Sbjct: 103 NQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|74959788|ref|NP_080849.1| regulator of nonsense transcripts 3B [Mus musculus]
gi|74211353|dbj|BAE26432.1| unnamed protein product [Mus musculus]
Length = 472
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +
Sbjct: 103 NQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|322790928|gb|EFZ15594.1| hypothetical protein SINV_80357 [Solenopsis invicta]
Length = 319
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 27/170 (15%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFC---FRPGKSSFFYSYKHQRYSRAYVELKK 66
VVIR LPP+++Q+ L Y +F G+ +F SRAY+ +
Sbjct: 1 VVIRRLPPTMTQDQFLEQVSPLPEHDYMYFVKADMSLGQFAF---------SRAYINFME 51
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDYLE 124
+F F E + +VFV+ KG ++ A+VE+AP QR+PK + +KD + GTI D Y+
Sbjct: 52 QQDIFMFREKFDNYVFVDSKGVEYPAVVEFAPFQRLPKKRAGKKKDLKCGTIESDSYYIS 111
Query: 125 FLKVIAKPAENLPSAEIQ--LERKEAELSGAPKET----LVVTPLMEYVR 168
FL ENL + EI + + + E S P + ++ TPL+EY++
Sbjct: 112 FL-------ENLKNQEIDSSVAQSKTEYSYQPPDNTVKKIMTTPLLEYLK 154
>gi|307207790|gb|EFN85408.1| Regulator of nonsense transcripts 3A [Harpegnathos saltator]
Length = 694
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 89/175 (50%), Gaps = 27/175 (15%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR---DHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
TKVVIR LPP+++Q L +H ++F F S +SRAY+
Sbjct: 45 TKVVIRRLPPTMTQEQFLEQISPLPEH-----DYFYFVKADMSL----GQFAFSRAYINF 95
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFS--RKDSREGTIFKDPDY 122
+F F E + +VF++ KG ++ A+VE+AP QR+ + +KD + GTI D Y
Sbjct: 96 TDQQDIFVFREKFDNYVFIDAKGVEYPAVVEFAPFQRLARKRHGRKKDLKCGTIESDSYY 155
Query: 123 LEFLKVIAKPAENLPSAEI--QLERKEAELSGAPKET----LVVTPLMEYVRQKR 171
+ FL E+L + EI + + + E S P + + TPL+EY++Q++
Sbjct: 156 ISFL-------ESLKNQEIDSNVAQSKTEYSYQPPDNTTKKVTTTPLLEYLKQRK 203
>gi|148697043|gb|EDL28990.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Mus musculus]
Length = 485
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +
Sbjct: 103 NQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|389746289|gb|EIM87469.1| hypothetical protein STEHIDRAFT_146836 [Stereum hirsutum FP-91666
SS1]
Length = 505
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+R K ++R LP +L + + ND W F PGK + K SRAY+
Sbjct: 24 ERLKTIVRRLPANLPEEIFWQSVHNWVNDDTVIWKVFYPGKLRKKVN-KENILSRAYIAF 82
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDY 122
K + F+ +GH+F ++ G + +A+VE+AP Q++P P +K DSR GTI KD D+
Sbjct: 83 KSEELLAAFSRDYDGHIFRDKAGNESRAVVEFAPYQKIP-PLEKKKMDSRNGTIEKDEDF 141
Query: 123 LEFLKVI----AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 174
+ F++++ KP +N E LE A S P+ TPL+E ++ +++A+
Sbjct: 142 ISFMQLLDTSSTKPHDN----ESLLETLIA--STQPQPQPKSTPLLEALKAEKSAQ 191
>gi|405121729|gb|AFR96497.1| hypothetical protein CNAG_03276 [Cryptococcus neoformans var.
grubii H99]
Length = 415
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 25/164 (15%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVELK 65
R K+VIR LPP+L ++ D+ W F GK+ H YSRAYV +
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSTYDSHPVYSRAYVLMA 70
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLE 124
P + F A+F+A+VEYAP Q+ P K + D+R+GT+ +DPDYL
Sbjct: 71 DPESLINFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTVDEDPDYLS 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 168
F++ + N P + LE P TPL+E++R
Sbjct: 119 FIESL-----NAPVTKPVLE------VATPVAQPTTTPLLEHLR 151
>gi|431913181|gb|ELK14863.1| Regulator of nonsense transcripts 3A [Pteropus alecto]
Length = 485
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK-PFSRKDSREGTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +KD++ G+I D +Y FL
Sbjct: 122 DDILLFRDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKRRLKKKDAKTGSIEGDLEYKRFL 181
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E + L ++ +E TPL+EY++ ++
Sbjct: 182 EAYSVEEEKTSTNPETL---LGDIEAKTREHFARRTTPLLEYIKNRK 225
>gi|351698236|gb|EHB01155.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 428
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVAGADRSL---YPHL-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR-VPKPFSRKDSREGTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q+ V + ++DS+ G I DP+Y +FL
Sbjct: 120 DDILLFRDRFDGYVFMSSKGLEYPAVVEFAPFQKIVRRKLKKRDSKTGGIEDDPEYKQFL 179
Query: 127 KVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E + EI L E+ +E + TPL++Y++ ++
Sbjct: 180 ETYSMEEERTSANPEILL----GEIEAKTRELVARRTTPLLDYIKNRK 223
>gi|428172186|gb|EKX41097.1| hypothetical protein GUITHDRAFT_142255 [Guillardia theta CCMP2712]
Length = 350
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 60/301 (19%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
P + KV IR LPP++++ + L N +W P + K + A
Sbjct: 10 PRAKLKVWIRGLPPAMTEEEFKELLESITPPNNKSIDWQRLVP-------ANKRVPTTTA 62
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ +F L+GH F++ KG +++A++EYAP Q++P+ D REGTI KD
Sbjct: 63 YLHFSNEEALFGLFSKLDGHKFIDAKGREYRALIEYAPYQKIPRK-KVIDKREGTIEKDA 121
Query: 121 DYLEFL-KVIAKPAENLPSAEIQLERKEAE-----------LSGAPKETLVV-----TPL 163
D++ F K+ ++ + SAE LER+E E LS + +VV TPL
Sbjct: 122 DFIAFQEKLESELNMKVESAEAWLERREQEAQAAKDRLKALLSAEGENGVVVHEVVHTPL 181
Query: 164 MEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARR 223
++Y+R+K+ R + + K ++ E+++ + S+ RR
Sbjct: 182 LDYLREKKE----------------RDQRDRSKKRDEERRRKADEERQRRMGRSSDRKRR 225
Query: 224 KDKSTFTVVAKREDQPASSSGKETSASETICG-----VE--GSVGIP--LTSDTGKKKIL 274
+ V+ SGKE + +T C +E G+ +P LT GK+K L
Sbjct: 226 GEAIKGKVL-------LLESGKEDKSRQTWCKGSLWRLESPGAARLPGNLTRPKGKEKQL 278
Query: 275 L 275
L
Sbjct: 279 L 279
>gi|361128996|gb|EHL00920.1| putative Regulator of nonsense transcripts 3A [Glarea lozoyensis
74030]
Length = 594
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 93/185 (50%), Gaps = 24/185 (12%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P + KV++R LPP L++ + +++ + + + +++ ++PGK S S K R S
Sbjct: 36 KPPAPKLKVIVRRLPPGLTEAEFISVLGNDWKLGQGKVDYYVYKPGKDSKDPS-KPSRPS 94
Query: 59 RAYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSR 112
RAY L + +EL+ VF N VE+AP RVP R D+R
Sbjct: 95 RAYFHLTNENYLMTLSELVRQSVFEDAQNTFNNPCLIGPPSVEFAPYNRVPGGRRRVDAR 154
Query: 113 EGTIFKDPDYLEFLKVIAKPAENL-----PSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
GTI +D +++ FL+ +A P P+AE +SG P E + TPL++Y+
Sbjct: 155 AGTIDQDSEFMSFLEGLANPTTTKDTGADPAAE--------GVSGKP-EKVTTTPLVQYL 205
Query: 168 RQKRA 172
+ K+A
Sbjct: 206 KDKKA 210
>gi|66267353|gb|AAH95761.1| Upf3a protein [Danio rerio]
Length = 201
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 98/170 (57%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSLS++ L ++H + +++F F P S Y H +SRAY+ K
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSL---YPHL-FSRAYINFK 94
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
P + F + +G+VF++ KG ++ A+VE+AP Q+V K +K + GTI +DP+Y
Sbjct: 95 NPEDIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRR 154
Query: 125 FLKVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ + E ++ + E L E+ +E + TPL+EY+++K+
Sbjct: 155 FLENYSCDEEKSMANPETLL----GEIEAKTRELIAKRTTPLLEYIKKKK 200
>gi|451845066|gb|EMD58380.1| hypothetical protein COCSADRAFT_62417, partial [Cochliobolus
sativus ND90Pr]
Length = 603
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K++ R LPP L++ + + + D + R +W +R GK S + K + +
Sbjct: 27 KPPQPRLKLICRRLPPGLTKQEFVNVLGDDWKLGAGRIDWLSYRKGKIST-DAAKPSKPA 85
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSR 112
RAY+ + KP V + + F + K Q +V EYAP ++P R D+R
Sbjct: 86 RAYLHVTKPDHVKALGDYIRALSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNR 145
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+GTI +D ++ +FL+ + P P+ E S APK+ + TPL+E +R+K+A
Sbjct: 146 QGTIDQDQEFKDFLESLTNPITKPPAPE----------SEAPKDKVKTTPLIEALREKKA 195
>gi|194754295|ref|XP_001959431.1| GF12056 [Drosophila ananassae]
gi|190620729|gb|EDV36253.1| GF12056 [Drosophila ananassae]
Length = 503
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 31/179 (17%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE-- 63
Q K+V+RHLPP++++++ L + Y +FC P +S + RAY++
Sbjct: 32 QIIKIVVRHLPPTMTESEFLEQVGPLPENDYYYFC--PAD----WSLGQEATCRAYIDMS 85
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDY 122
LK + V +F + +G+VFV+ KG+++ AIVEYAP Q K +R D++ TI + Y
Sbjct: 86 LKDISDVLQFRDRFDGYVFVDNKGSEYMAIVEYAPFQSFLKNKARNDDAKVNTIESESHY 145
Query: 123 LEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 171
EF++ +A ER+EA G K E TPL++Y+ K+
Sbjct: 146 QEFIQRLAD------------EREEASRLGDVKIDFNFERRLDENCKSTPLLQYLANKK 192
>gi|344283648|ref|XP_003413583.1| PREDICTED: regulator of nonsense transcripts 3A-like [Loxodonta
africana]
Length = 511
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L Y FC ++ Y H YSRAY+ + P
Sbjct: 82 SKVVIRRLPPSLTKEQLDEQLHPLPAHDYFEFC-----TANLSLYPHL-YSRAYINFRNP 135
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DPDY +FL
Sbjct: 136 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKTGSIEDDPDYKKFL 195
Query: 127 KVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+V + E + E L E+ +E + TPL+EY++ ++
Sbjct: 196 EVYSMEEEKTSANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 239
>gi|134113891|ref|XP_774193.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256828|gb|EAL19546.1| hypothetical protein CNBG1750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 415
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVELK 65
R K+VIR LPP+L ++ D+ W F GK+ H YSRAYV +
Sbjct: 11 RNKLVIRRLPPTLPEDIFWQSVSAWITDKNCLWKSFIKGKAGDSNYDSHPVYSRAYVLMA 70
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLE 124
P + F ++F+A+VEYAP Q+ P K + D+R+GTI +DPDYL
Sbjct: 71 DPESLVNFHR------------SEFQAVVEYAPFQKAPLKTKVKVDNRQGTIDEDPDYLS 118
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 173
+++ + N P + LE P TPL+E++R +++A
Sbjct: 119 YIQSL-----NAPVTKPVLE------VATPVAQPTTTPLLEHLRSQKSA 156
>gi|346321399|gb|EGX90998.1| nonsense-mediated mRNA decay protein Upf3, putative [Cordyceps
militaris CM01]
Length = 635
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 95/186 (51%), Gaps = 30/186 (16%)
Query: 2 KEPLQR-----TKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYK 53
K P QR K+++R LPP +++ + +A+ D + + +WF F PGK S
Sbjct: 63 KPPRQRQQNEGVKLILRRLPPGMTEAECVAILSDAWTLGKGKVDWFSFIPGKIS------ 116
Query: 54 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPF 106
+ AY+ L + +E + + + K + F + +E + ++VP
Sbjct: 117 ----TEAYIHLVRKDDTLALSETVRAATWEDAKNS-FTSPALVGPPCLELSAYKKVPSSK 171
Query: 107 SRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEY 166
R D+R+GTI +DP+++ FL+ +A PA SA+++ + + + + + TPL+EY
Sbjct: 172 KRTDTRQGTIDQDPEFMAFLEGLANPAPLRESADLE----DGDDANKGESKVTTTPLVEY 227
Query: 167 VRQKRA 172
+++K+A
Sbjct: 228 LKEKKA 233
>gi|167535258|ref|XP_001749303.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772169|gb|EDQ85824.1| predicted protein [Monosiga brevicollis MX1]
Length = 402
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
K P + ++VIR LPP L + ++ L + ++ F F G + + ++RAY
Sbjct: 13 KAPKENLRLVIRRLPPKLPEEIMMRLLAP-YQQFFSNFYFVVGDPTL----EKNCFARAY 67
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPD 121
V+ + FA +GH+F + G++ +A VE AP VP P D +GTI DPD
Sbjct: 68 VKFNNRDAMLHFARGFDGHLFKGQDGSEHRARVECAPFADVP-PKKAPDPLQGTIEDDPD 126
Query: 122 YLEFLKVIAKPAENLPSAEIQLERKEAELS-------GAPKETLVVTPLMEYVRQKRA 172
Y FL+ E LPSAE L+ EA+L+ P + V L E + KRA
Sbjct: 127 YKRFLEERDAKPEALPSAEEWLKEHEAQLAELADPADATPLQAFVGLKLEEKAKAKRA 184
>gi|281342416|gb|EFB18000.1| hypothetical protein PANDA_015590 [Ailuropoda melanoleuca]
Length = 375
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 16/168 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPPSL++ L R +++F F SS Y H YSRAY+ + P
Sbjct: 10 QVVIRRLPPSLTKEQLEEQLRPL--PAHDYFEFFTADSSL---YPHL-YSRAYINFRNPD 63
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFLK 127
+ F + +G++F++ KG ++ A+VE+AP Q K RKD++ G+I DP+Y +FL+
Sbjct: 64 DILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKRKDAQTGSIEDDPEYKKFLE 123
Query: 128 VIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
KP N + +E K EL TPL+EY+R ++
Sbjct: 124 TYCVEEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 166
>gi|345788839|ref|XP_849752.2| PREDICTED: regulator of nonsense transcripts 3A [Canis lupus
familiaris]
Length = 475
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L H +++F F P S Y H YSRAY+ + P
Sbjct: 67 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFPADLSL---YPHL-YSRAYINFRNP 120
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 121 EDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL 180
Query: 127 KVIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ KP N + +E K EL TPL+EY+R ++
Sbjct: 181 ETYCVEEEKPNTNPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 224
>gi|301622005|ref|XP_002940331.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 463
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+KVVIR LPPSL++ L L DH ++F F SS F +SRAY+
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLF----PHMFSRAYINF 87
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYL 123
K + F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y
Sbjct: 88 KSQDDIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYK 147
Query: 124 EFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 168
+FL E L S E LE E+ KE + TPL+ +++
Sbjct: 148 KFLDSYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|315053341|ref|XP_003176044.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
gi|311337890|gb|EFQ97092.1| hypothetical protein MGYG_00135 [Arthroderma gypseum CBS 118893]
Length = 606
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+ +R LPP L+Q + + D++ + +WF F+ GK S S K R RAY+
Sbjct: 42 RLKLHVRRLPPGLTQAEFESTLGDYWKVGQGKIDWFLFKEGKVSTDPS-KPSRPGRAYLR 100
Query: 64 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
+ + E +E + F N+ +EYAP RVP +R D+R GTI
Sbjct: 101 VTSSVTIPELSEAIRQTAFRDARNTCNDSALLGPPTLEYAPFSRVPSVKTRNDARVGTID 160
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+D +++ FL+ + P P E +AE +TPL++Y+R+
Sbjct: 161 QDAEFIAFLESLTNPVTKPPEEETAETADKAEKP-------TITPLIQYLRE 205
>gi|301622003|ref|XP_002940330.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 508
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+KVVIR LPPSL++ L L DH ++F F SS F +SRAY+
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLF----PHMFSRAYINF 87
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYL 123
K + F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y
Sbjct: 88 KSQDDIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYK 147
Query: 124 EFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 168
+FL E L S E LE E+ KE + TPL+ +++
Sbjct: 148 KFLDSYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|170095539|ref|XP_001878990.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646294|gb|EDR10540.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 520
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSR 59
+++ ++R K V+R LPP+L ++ + + +W F GKS S K SR
Sbjct: 32 LQQSIERLKTVVRRLPPNLPEDVFWQSVQPWVTEESVSWKVFYAGKSRKRLS-KENIPSR 90
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKD 119
AY+ K + +F+ +GH+F ++ G + AIVE+AP Q+VP + D+R TI KD
Sbjct: 91 AYIAFKSEEKLAQFSREYDGHLFRDKAGNESYAIVEFAPYQKVPTEKRKPDARNATIEKD 150
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 173
DY+ F+ + A P LE A AP+ TPL+E ++ +++A
Sbjct: 151 EDYISFIDSLNASANAEPPT---LEALIASTQQAPQPK--TTPLLEALKAEKSA 199
>gi|258572902|ref|XP_002545213.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905483|gb|EEP79884.1| predicted protein [Uncinocarpus reesii 1704]
Length = 574
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 101/201 (50%), Gaps = 24/201 (11%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSY-----KHQRYS 58
R K+++R LPP L+Q + + + +W ++ GK S Y Y K + S
Sbjct: 39 RLKLLVRRLPPGLTQAEFDVALGTEWALGKGKVDWLSYKHGKVSTDYHYTTSPSKPSKPS 98
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQF------KAIVEYAPSQRVPKPFSRKDSR 112
RAY+ + A V E ++ + G F + + A +EYAP R P RKD+R
Sbjct: 99 RAYLRVTSSAIVGELSDKIRGASFQDARNTASDPSLLGPATLEYAPYPRAPGAKVRKDAR 158
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
GTI +D +++ FL+ + P PS++ LE + +E + +TPL++++++K+A
Sbjct: 159 LGTIDQDSEFIAFLESLTNPVPK-PSSDDLLEPER-------EEKITITPLIQFLKEKKA 210
Query: 173 AESGAQESLAVGRVGRRSRAA 193
+ A+E+ R + SR A
Sbjct: 211 --NKAREASLPSRATKPSRPA 229
>gi|242007240|ref|XP_002424450.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
gi|212507850|gb|EEB11712.1| Regulator of nonsense transcripts 3A, putative [Pediculus humanus
corporis]
Length = 720
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 86/174 (49%), Gaps = 29/174 (16%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDR--YNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
KVVIR LPP L++ F + F+ +++F F G + +SRAY+
Sbjct: 52 KVVIRRLPPKLTK----EAFCEEFSPLPPHDYFHFVRGD----LNLGSHAFSRAYINFIN 103
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--KPFSRKDSREGTIFKDPDYLE 124
+F F E + + ++KG + A+VE+AP Q++P K +K S+ GT+ DP Y+E
Sbjct: 104 QKDIFSFKEKYDDYDIQDDKGRTYHAVVEFAPFQKIPKRKVLKKKSSKAGTLESDPKYVE 163
Query: 125 FL-------KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
FL I P+E E + A K ++ TPL+E++++KR
Sbjct: 164 FLHKLEESKNFINNPSEYFHETE----------NPALKAKVITTPLLEFLKKKR 207
>gi|384485135|gb|EIE77315.1| hypothetical protein RO3G_02019 [Rhizopus delemar RA 99-880]
Length = 298
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 90/180 (50%), Gaps = 46/180 (25%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+TKVV+R LPP LS+++ + + N+ ++ + PGK +
Sbjct: 34 KTKVVVRRLPPLLSKDEFMEAVKTWINEETTDYSSYIPGKVAK----------------- 76
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
+G E HVF + +G + +A+VE++P Q+ P+ KDSREGTI +DP+YL+F
Sbjct: 77 --SGFDE-------HVFTDSRGNESRAVVEFSPYQKTPREHKSKDSREGTIDEDPEYLDF 127
Query: 126 LKVIAKPAENLPSAEIQ---------LERKEAELSGAPKETLV--------VTPLMEYVR 168
LK + AE +AE Q +E+ E ++ +TL TPL+E++R
Sbjct: 128 LKRLE--AEKNKTAETQDDGKDGLNPIEKLENRIAMVTAKTLAAEQANKPKTTPLLEHLR 185
>gi|301622007|ref|XP_002940332.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Xenopus
(Silurana) tropicalis]
Length = 465
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+KVVIR LPPSL++ L L DH ++F F SS F +SRAY+
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLF----PHMFSRAYINF 87
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYL 123
K + F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y
Sbjct: 88 KSQDDIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYK 147
Query: 124 EFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVR 168
+FL E L S E LE E+ KE + TPL+ +++
Sbjct: 148 KFLDSYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLK 191
>gi|194885777|ref|XP_001976490.1| GG19981 [Drosophila erecta]
gi|190659677|gb|EDV56890.1| GG19981 [Drosophila erecta]
Length = 489
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 33/176 (18%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDH-FNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
Q K+V+RHLPP++++ + L ND Y ++C +S H+ RAY+++
Sbjct: 28 QIIKIVMRHLPPTMTEAEFLEQVGPLPENDSY-YYC------KADWSLGHEATCRAYIDM 80
Query: 65 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPD 121
K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI +P
Sbjct: 81 SSKDITEVLQFRDRFDGYVFVDNKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIEIEPH 140
Query: 122 YLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 167
Y EF+K A+ ER+EA G K E + TPL++Y+
Sbjct: 141 YQEFIKRQAE------------EREEASRMGDVKIEFNIDRRTDEKVKSTPLLQYL 184
>gi|156034344|ref|XP_001585591.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980]
gi|154698878|gb|EDN98616.1| hypothetical protein SS1G_13475 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 619
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 95/176 (53%), Gaps = 16/176 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
+ K+++R L P L++ + ++ D + + +WF ++ GK S S K R SRAY+
Sbjct: 38 KLKLIVRRLAPGLTEVEFFSVLGDEWKVGQGKVDWFQYKLGKDSKDPS-KPSRPSRAYLH 96
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRK-DSREGTI 116
L + F+E++ F + K + VE+AP RVP R+ D+R GTI
Sbjct: 97 LTSGDHLLPFSEVVRKSSFEDAKNTYTDSCLIGPPSVEFAPYSRVPAGLKRRTDARAGTI 156
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DP+++ FL+ +A P + + EI + E +G P E + VTPL+++++ K+A
Sbjct: 157 DQDPEFMAFLEGLANP---VTTKEIGAD-GEDPPTGKP-EKVTVTPLVQFLKDKKA 207
>gi|301089485|ref|XP_002895038.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262103692|gb|EEY61744.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 453
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 120/255 (47%), Gaps = 14/255 (5%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK-P 67
K+V+R++PP+ S+ + L + H + F PG+ + + +R YV++KK P
Sbjct: 84 KLVVRNIPPTASEQEARELMQAHGVKNELIWRFVPGRQR--SNNRPPTPARLYVDMKKEP 141
Query: 68 AGVFEFAELLNGHVF---VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
+ L+G F +K VE+AP Q++P+ RKD + GTI DP+YL
Sbjct: 142 ERARKLIASLHGQFFYPDTKDKEGTKPLDVEFAPFQKIPREKQRKDVKVGTIDCDPEYLA 201
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQESLA 182
FL+ +AKP + LPSAE ++ E E P LV + + R K +SG + +
Sbjct: 202 FLEELAKPKDKLPSAEALVDMAEGETLEKPVAALVKYLNERKSHNRDKCRGKSGGKSADK 261
Query: 183 VGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARRKDKSTFTVVAKREDQPASS 242
G + + S K + K +++K D+A+ F R+ + SS
Sbjct: 262 NGHRVKGKKDGSKPKAAKDKVKSSKDRQKKGTGDAAR------AQVFLDPKSRKPRGRSS 315
Query: 243 SGKETSASETICGVE 257
S KE++ +++ E
Sbjct: 316 SKKESTKPDSLLKAE 330
>gi|158296237|ref|XP_316679.4| AGAP006649-PA [Anopheles gambiae str. PEST]
gi|157016415|gb|EAA10775.4| AGAP006649-PA [Anopheles gambiae str. PEST]
Length = 661
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 21/176 (11%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFY-----SYKHQRYS 58
P T+VVIR LPP++++ ALF + P F++ +
Sbjct: 65 PAPMTRVVIRRLPPTMTE----ALFCEQIAVDGKL----PANDEFYFVGPDWTLGQNASC 116
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIF 117
RAY+ PA +F F + +G+ FV+ KG +++A+VEYAP Q K +R KD + GTI
Sbjct: 117 RAYINFTNPADIFRFTDSYDGYTFVDSKGMEYQAVVEYAPFQGPLKARARKKDPKCGTIE 176
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSG--APKETLVVTPLMEYVRQKR 171
D ++ F + + K E E R E S +E TPL+EY+ Q++
Sbjct: 177 SDTHFIAFKEALEKEQE-----EALHGRGTQEFSFKIEQEEKTTTTPLLEYIAQRK 227
>gi|239612565|gb|EEQ89552.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ER-3]
Length = 571
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A+ D + N + +WF ++ GK S + K R +R Y+
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPA-KPSRPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 96 VTSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 177
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 156 LDSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKE 207
Query: 178 QESL 181
SL
Sbjct: 208 ASSL 211
>gi|261203062|ref|XP_002628745.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
gi|239590842|gb|EEQ73423.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
SLH14081]
Length = 571
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A+ D + N + +WF ++ GK S + K R +R Y+
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPA-KPSRPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 96 VTSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 177
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 156 LDSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKE 207
Query: 178 QESL 181
SL
Sbjct: 208 ASSL 211
>gi|327355537|gb|EGE84394.1| nonsense-mediated mRNA decay protein Upf3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 571
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A+ D + N + +WF ++ GK S + K R +R Y+
Sbjct: 37 RLKLLIRRLPPGLTPQEFEAVLGDEWKVGNGKVDWFHYKEGKVSKDPA-KPSRPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + +V EYAP RVP R+D R+GTI
Sbjct: 96 VTSIPLVEELSEKVRASAFQDARNTSRDPVVLGPPAVEYAPYPRVPSSRVRRDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGA 177
D D++ FL+ + P P+ +I E + +E +TPL+++++ K+A +
Sbjct: 156 LDSDFIAFLESLTNPVTK-PAMDIGAEDTK-------EEKPTITPLIQFLKDKKANKGKE 207
Query: 178 QESL 181
SL
Sbjct: 208 ASSL 211
>gi|12860428|dbj|BAB31954.1| unnamed protein product [Mus musculus]
gi|74189593|dbj|BAE36799.1| unnamed protein product [Mus musculus]
Length = 232
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +
Sbjct: 103 NQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 208
>gi|114051045|ref|NP_001040320.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
gi|87248437|gb|ABD36271.1| Upf3 regulator of nonsense transcripts-like protein B [Bombyx mori]
Length = 499
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRP-GKSSFFY------SYKHQRYSRA 60
TK+++R LPP++++ W P + +FY ++ + +SRA
Sbjct: 35 TKIILRRLPPTMTEETF-------------WEQVSPIPEHDYFYFAKPDPTWGNNLFSRA 81
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ +F F + +G+VF++EKG ++ IVEYAP QR+ K +KD + GT+ DP
Sbjct: 82 YINFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQRISKKKKKKDPKCGTLESDP 141
Query: 121 DYLEFLKVIAK--PAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
Y EF++ + K E+ P E ++ ++ TPL+EY+
Sbjct: 142 IYQEFIESLNKDPEVESQPKLEYSY-----PINDVSEKKTQSTPLLEYL 185
>gi|400598965|gb|EJP66672.1| nonsense-mediated mRNA decay protein Upf3 [Beauveria bassiana ARSEF
2860]
Length = 645
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 32/221 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+++R LPP +++ + +A+ D + + +W F PGK S S K R +RAY+ L
Sbjct: 75 KLILRRLPPGMTEAECVAILGDRWIVGKGKVDWSSFIPGKISTDPS-KPSRPARAYIHLI 133
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS------QRVPKPFSRKDSREGTIFKD 119
K + +E + + + K + + PS ++VP R D+R+GTI +D
Sbjct: 134 KKDDMLALSETVIAATWEDAKNSFTSPALVGPPSLELSAYKKVPNNKKRTDARQGTIDQD 193
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES---- 175
P+++ FL+ +A P +P + + G K + TPL+EY+++K+A +S
Sbjct: 194 PEFMAFLEGLANP---VPLRDSADLDDDDANKGENK--VTTTPLVEYLKEKKANKSKDSS 248
Query: 176 -----------GAQESLAVGRVGRRSRAASASKT--SSTTT 203
G++E + GR SRA K SSTTT
Sbjct: 249 AGKKRGETKSKGSKEDEPSKKKGRESRAEKTEKVEKSSTTT 289
>gi|83768844|dbj|BAE58981.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 558
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSS---FFYSYKHQRYSRA 60
R K+++R LPP L+Q + + + +WF ++PGK S ++ +
Sbjct: 44 RLKLLVRRLPPGLTQAEFEVAVGPEWKLGAGKIDWFQYKPGKVSKDDHIIPLSNKVRQVS 103
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
+ + + N + + VEYAP +VP RKD+R+GTI +DP
Sbjct: 104 FTDAR---------NTFNDPILLGPPS------VEYAPYAKVPGSRVRKDARQGTIDQDP 148
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
D++ FL+ + +P P+ E + +E KET+ TPL++Y+++K+A
Sbjct: 149 DFIAFLESLTQPITKPPTVENATDAEEK------KETVTTTPLVQYIKEKKA 194
>gi|17863070|gb|AAL40012.1| SD10857p [Drosophila melanogaster]
Length = 450
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 90/180 (50%), Gaps = 41/180 (22%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
Q K+V+RHLPP++++ A F D ND Y ++C +S + RA
Sbjct: 28 QIVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC------KADWSLGQEATCRA 76
Query: 61 YVEL--KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIF 117
Y+++ K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI
Sbjct: 77 YIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIE 136
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 167
+P Y EF+K +A+ ER+EA G K E + TPL++Y+
Sbjct: 137 SEPHYQEFIKRLAQ------------EREEASRMGDVKIDFNFERRTEEKVKSTPLLQYL 184
>gi|321260903|ref|XP_003195171.1| hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
gi|317461644|gb|ADV23384.1| Hypothetical protein CGB_G2380W [Cryptococcus gattii WM276]
Length = 416
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
K+VIR LPP+L ++ D+ W F GK+ YSRAYV + P
Sbjct: 13 KLVIRRLPPTLPEDIFWQSVSTWITDKTCLWKSFVKGKAGDSNYDSRPVYSRAYVLMADP 72
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDPDYLEFL 126
+ F A+F+A+VEYAP Q+ P K + D+R+GTI +DPDYL F+
Sbjct: 73 ESLVNFHR------------AEFQAVVEYAPFQKTPLKTKVKVDNRQGTIDEDPDYLSFM 120
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 168
+ + P P+ E+ AP TPL+E++R
Sbjct: 121 ESLNAPVTK-PALEV----------AAPVTQPTTTPLLEHLR 151
>gi|357618013|gb|EHJ71109.1| Upf3 regulator of nonsense transcripts-like protein B [Danaus
plexippus]
Length = 509
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 34/257 (13%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSFFYSYKHQRYS 58
PL TK+++R LPP++++ L DHF +F +P S + YS
Sbjct: 33 PL--TKIILRRLPPTMTEEAFLEQVSPIPEHDHF-----YFA-KPDNS-----LGNNVYS 79
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK 118
RAY+ ++ F + +G+VF++EKG ++ IVEYAP QR+PK +KD + GTI
Sbjct: 80 RAYINFVNVDDIYLFRDKFDGYVFLDEKGVEYVGIVEYAPFQRIPKKKKKKDPKCGTIES 139
Query: 119 DPDYLEFLKVIAKPAE--NLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESG 176
DP Y EF++ ++K E N P E ++ + TPL+EY+ ++ + G
Sbjct: 140 DPIYQEFVENLSKEQETDNQPKLEYSY-----PVNDNNDKKNQSTPLLEYLAARKQDKRG 194
Query: 177 AQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKYILK---------DSAKNARRKDKS 227
E R+ R +K S+ + E +K D+ ++ + DK
Sbjct: 195 RDERRRRENDKRKMRIERKTKDSTIKEEDFVENDIRKIKSREWDKEKADTKEDQVKSDKD 254
Query: 228 TFTVVAKREDQPASSSG 244
F RE + A+S+
Sbjct: 255 VFEYKTYREQRKAASTS 271
>gi|334350192|ref|XP_001372586.2| PREDICTED: regulator of nonsense transcripts 3B-like [Monodelphis
domestica]
Length = 564
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KV+IR LPP+L++ L +H +++F F SS Y H +SRAY+ K
Sbjct: 139 SKVIIRRLPPTLTKEQL----EEHLQPLPEHDYFEFFANDSSL---YPHM-FSRAYINFK 190
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 191 NQEDIVLFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKTGTIEDDPEYKK 250
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 251 FLESYCAEEEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 295
>gi|307165852|gb|EFN60215.1| Regulator of nonsense transcripts 3B [Camponotus floridanus]
Length = 601
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 31/174 (17%)
Query: 8 TKVVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
TKVVIR LPP+++Q+ L DH +F K+ S +SRAY+
Sbjct: 47 TKVVIRRLPPTMTQDQFLEQVSPLPEHDHL-----YFV----KADM--SLGQFAFSRAYI 95
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREGTIFKDP 120
+F F E + +VF++ KG ++ A+VE+AP QR+PK +KD + GTI D
Sbjct: 96 NFIDQQDIFMFREKFDNYVFIDSKGVEYPAVVEFAPFQRLPKKRVGKKKDLKCGTIESDL 155
Query: 121 DYLEFLKVIAKPAENLPSAEIQ--LERKEAELSGAPKET----LVVTPLMEYVR 168
++ FL E L + E+ + + + E S P + + TPL+EY++
Sbjct: 156 YFINFL-------EGLKNQEVDSSVTQSKTEYSYQPPDNTAKKITTTPLLEYLK 202
>gi|170038524|ref|XP_001847099.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882242|gb|EDS45625.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 620
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 13/167 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
TKVVIR LPPS+ + FR + ++ F F G +S SRAY+
Sbjct: 62 TKVVIRRLPPSMDEE----TFRKQIDPIPDHDDFYFVSGD----WSLGKNASSRAYINFT 113
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLE 124
+ +F F + +G+ FV+ KG ++ A+VE+AP Q +P+ SR KD++ GTI D ++
Sbjct: 114 RAEDIFLFKDKFDGYDFVDAKGVEYPAVVEFAPFQELPRNRSRKKDAKVGTIETDTHFVA 173
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
F + + AE +A + E ++ + TPL+E++ QK+
Sbjct: 174 FKEALE--AEEKDTAGKSKSKLEYSYKIKDEKKITSTPLLEFIAQKK 218
>gi|340517692|gb|EGR47935.1| predicted protein [Trichoderma reesei QM6a]
Length = 632
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 114/221 (51%), Gaps = 20/221 (9%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRY 57
+ P + KV+IR LPP L++ + L++ + N + +WF + GK S S K R
Sbjct: 42 TRAPQEGEKVIIRRLPPGLTEAECLSILGPEWAVGNGKVDWFSYAVGKVSNELS-KPSRP 100
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA-------IVEYAPSQRVPKPFSRKD 110
+RAY+ L + + ++ + + + K + F + ++E A ++VP R D
Sbjct: 101 ARAYIHLMRKEYIMPLSDFVRNATWEDAK-STFTSPSLIGPPVLEIAIYKKVPGNKKRVD 159
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV-VTPLMEYVRQ 169
+R+GTI +DP+++ FL+ +A PA E E + P ET V TPL+EY+++
Sbjct: 160 ARQGTIDQDPEFMAFLEGLANPAP-------PRESNENDDVEEPAETKVTTTPLIEYLKE 212
Query: 170 KRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKK 210
K+A ++ + + R+ A+++ S++ GS+KK
Sbjct: 213 KKANKAKEAAAAKSAKHARQQEASASKGKSASKDDEGSKKK 253
>gi|395855174|ref|XP_003800045.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Otolemur garnettii]
Length = 556
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDH-FNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L+Q L R +D + +F S+ Y H YSRAY+ +
Sbjct: 67 SKVVIRRLPPGLTQEQLQEQLRPLPAHDYFEFF------SADLSLYPHL-YSRAYINFRN 119
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +F
Sbjct: 120 PDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKPKKKDAKTGSIEDDPEYKKF 179
Query: 126 LKVIAKPAEN-LPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + + E L E+ +E + TPL+EY++ ++
Sbjct: 180 LETYCVEEEKAIANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 224
>gi|401411995|ref|XP_003885445.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
gi|325119864|emb|CBZ55417.1| hypothetical protein NCLIV_058400 [Neospora caninum Liverpool]
Length = 581
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+TKV +R LPPS+ + +L AL + ++ W F PG + R S YV
Sbjct: 270 KTKVAVRLLPPSVREEELFALVAESVQEKIAWTRFVPG--CQHKPGESSRNSTWYVNFAA 327
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFL 126
EF + +G FV+E+ FKA+ AP Q+VP+ + D REGT+ D YL+FL
Sbjct: 328 EEDAEEFIKSFHGKAFVDERHNTFKAVARLAPYQKVPRK-TGPDRREGTLANDSLYLDFL 386
Query: 127 KVI 129
+ +
Sbjct: 387 RAL 389
>gi|296814244|ref|XP_002847459.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238840484|gb|EEQ30146.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 575
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 118/263 (44%), Gaps = 49/263 (18%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSF-----FYSY---KHQ 55
R K+ +R LPP L+Q + + DH+ + +WF F+ GK S SY K
Sbjct: 42 RLKLHVRRLPPGLTQVEFESALGDHWKAGRGKIDWFLFKEGKVSSESVFQLNSYDPSKPS 101
Query: 56 RYSRAYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRK 109
R RAY+ + + E ++++ F N+ +EYAP RVP R
Sbjct: 102 RPGRAYLRINSSVTIPELSDVIRQTSFQDARNTYNDPALLGPPTLEYAPFSRVPSGKVRN 161
Query: 110 DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV-- 167
D+R GTI +D +++ FL+ + P PS E E E E +TPL++Y+
Sbjct: 162 DARVGTIDQDAEFIAFLESLTNPVTK-PSDEETTESAEKA------EKPTITPLIQYLKE 214
Query: 168 ---------------RQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKKY 212
+Q R+A A+ES A +G++ + A K S +KK
Sbjct: 215 KKANKAKEAAAAKSSKQSRSA--AAKESKAEKSIGKKQLLSRADKPVSE-----KQKKDK 267
Query: 213 ILKDSA-KNARRKDKSTFTVVAK 234
KD+A K+AR++++ + + K
Sbjct: 268 ATKDAAVKDARKRERGSLSAATK 290
>gi|195122768|ref|XP_002005883.1| GI18844 [Drosophila mojavensis]
gi|193910951|gb|EDW09818.1| GI18844 [Drosophila mojavensis]
Length = 469
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 31/176 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL--KK 66
K+V+RHLPP++++ + L + ++C P +S + RAY+++ K
Sbjct: 21 KIVVRHLPPTMTEKEFLEQVDPLPKNESYYYC--PAD----WSLGQEATCRAYIDMSPKD 74
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPDYLEF 125
+ +F + +G+VFV+ KGA++ AIVEYAP Q K +R D++ TI K+P + EF
Sbjct: 75 IDEIIQFRDRFDGYVFVDSKGAEYVAIVEYAPFQWFLKNKARSHDNKVNTIEKEPHFQEF 134
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYVRQKR 171
L+ +A+ ER+EA G K E + TPL++Y+ K+
Sbjct: 135 LQKLAE------------EREEANRLGDVKIDFNFESRNEEKVKSTPLLQYLANKK 178
>gi|451992492|gb|EMD84975.1| hypothetical protein COCHEDRAFT_1064154, partial [Cochliobolus
heterostrophus C5]
Length = 617
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K++ R LPP L++++ + D + R +W +R GK S + K + +
Sbjct: 27 KPPQPRLKLICRRLPPGLAKHEFAQVLGDDWKLGAGRIDWLSYRKGKIST-DAAKPSKPA 85
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSR 112
RAY+ + KP V + + F + K Q +V EYAP ++P R D+R
Sbjct: 86 RAYLHVTKPEHVKALGDHVRTLSFHDAAKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNR 145
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+GTI +D ++ +FL+ + P P+ E S APK+ + TPL+E +R+K+A
Sbjct: 146 QGTIDQDQEFKDFLESLTNPITKPPAPE----------SEAPKDKVKTTPLIEALREKKA 195
>gi|340719970|ref|XP_003398417.1| PREDICTED: hypothetical protein LOC100643701 isoform 1 [Bombus
terrestris]
Length = 626
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 11/121 (9%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREG 114
+SRAY+ + +F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + G
Sbjct: 89 FSRAYINFVEQQDIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCG 148
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQK 170
TI DP Y+ FL+ + AE + + + E S P + + TPL+EYV+Q+
Sbjct: 149 TIESDPYYISFLESLKN-----QEAESNISQPKTEYSYQPPDNTPKKVTTTPLLEYVKQR 203
Query: 171 R 171
+
Sbjct: 204 K 204
>gi|395545866|ref|XP_003774818.1| PREDICTED: regulator of nonsense transcripts 3B, partial
[Sarcophilus harrisii]
Length = 426
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KV+IR LPP+L++ L +H +++F F SS Y H +SRAY+ K
Sbjct: 3 SKVIIRRLPPTLTKEQL----EEHLQPLPEHDYFEFFANDSSL---YPHM-FSRAYINFK 54
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VFV+ KG ++ AIVE+AP Q K +KD++ GTI DP+Y +
Sbjct: 55 NQEDIVLFRDRFDGYVFVDHKGQEYPAIVEFAPFQKSAKKKNKKKDAKSGTIEDDPEYKK 114
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ E L S E LE E+ KE + TPL+ +++ K
Sbjct: 115 FLESYCAEEEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 159
>gi|395329442|gb|EJF61829.1| hypothetical protein DICSQDRAFT_136334 [Dichomitus squalens
LYAD-421 SS1]
Length = 486
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+R K V+R LPP+L ++ D W + GK + K SRAY+
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQSVGKWVTDETVTWKAYYQGKFKTRLN-KENIPSRAYIAF 91
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
+ + F+ +GH+F ++ G + AIVE+AP Q+VP + DSR GTI KD DY+
Sbjct: 92 RDEEILATFSREYDGHLFRDKNGNESIAIVEFAPFQKVPNEKKKADSRAGTIEKDEDYIS 151
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 174
FL+ + K + P LE A AP T TPL+E ++ +++A+
Sbjct: 152 FLESL-KEVSSKPFDLDTLETLIASTQPAPLPT--TTPLLEALKAEKSAQ 198
>gi|340719972|ref|XP_003398418.1| PREDICTED: hypothetical protein LOC100643701 isoform 2 [Bombus
terrestris]
gi|340719974|ref|XP_003398419.1| PREDICTED: hypothetical protein LOC100643701 isoform 3 [Bombus
terrestris]
Length = 570
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 69/121 (57%), Gaps = 11/121 (9%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPF--SRKDSREG 114
+SRAY+ + +F F E + +VFV+ KG ++ A+VE+AP QR+PK +KD + G
Sbjct: 33 FSRAYINFVEQQDIFMFREKFDNYVFVDSKGTEYPAVVEFAPFQRLPKKRIGKKKDLKCG 92
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKET----LVVTPLMEYVRQK 170
TI DP Y+ FL+ + AE + + + E S P + + TPL+EYV+Q+
Sbjct: 93 TIESDPYYISFLESLKN-----QEAESNISQPKTEYSYQPPDNTPKKVTTTPLLEYVKQR 147
Query: 171 R 171
+
Sbjct: 148 K 148
>gi|195586209|ref|XP_002082870.1| GD24999 [Drosophila simulans]
gi|194194879|gb|EDX08455.1| GD24999 [Drosophila simulans]
Length = 494
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 41/184 (22%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
Q K+V+RHLPP++++ A F D ND Y ++C +P +S + RA
Sbjct: 28 QVVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC-KPD-----WSLGQEATCRA 76
Query: 61 YVEL--KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIF 117
Y+++ K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI
Sbjct: 77 YIDMSSKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIE 136
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 167
+ Y EF+K +A+ ER+EA G K E + TPL++Y+
Sbjct: 137 SESHYQEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYL 184
Query: 168 RQKR 171
K+
Sbjct: 185 ANKK 188
>gi|367034768|ref|XP_003666666.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
gi|347013939|gb|AEO61421.1| hypothetical protein MYCTH_2311559 [Myceliophthora thermophila ATCC
42464]
Length = 722
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
Q KVV+R LPP +++++ + + D + + +WF + PGK S S K R SRAY+
Sbjct: 37 QGEKVVVRRLPPGMTEDEFVTILGDEWKVGGPKVDWFSYWPGKVSRHPS-KPSRPSRAYL 95
Query: 63 ELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
+ + + + + + N+ VE+A +++P R D R+GTI
Sbjct: 96 HVIRRDDLTALLQRVQTATWEDAKETYNDPALLSLPTVEFAAYKKIPGDKKRVDGRQGTI 155
Query: 117 FKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+DP+++ FL+ +A P + P E+Q AE A E + TPL+EY+
Sbjct: 156 DQDPEFMAFLEALANP--DAPK-EVQEVEPPAE-DPAKAEKTMTTPLVEYL 202
>gi|195347253|ref|XP_002040168.1| GM15496 [Drosophila sechellia]
gi|194135517|gb|EDW57033.1| GM15496 [Drosophila sechellia]
Length = 491
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 41/184 (22%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHF-----NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
Q K+V+RHLPP++++ A F D ND Y ++C +S + RA
Sbjct: 28 QVVKIVMRHLPPTMTE----AQFLDQVGPLPENDSY-YYC------KADWSLGQEATCRA 76
Query: 61 YVEL--KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIF 117
Y+++ K V +F + +G+VFV+ KG ++ AIVEYAP Q K +R DS+ TI
Sbjct: 77 YIDMSSKDIDEVLQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIE 136
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPK----------ETLVVTPLMEYV 167
+ Y EF+K +A+ ER+EA G K E + TPL++Y+
Sbjct: 137 SESHYQEFIKRLAQ------------EREEASRVGDVKIDFNFERRTEENVKSTPLLQYL 184
Query: 168 RQKR 171
K+
Sbjct: 185 ANKK 188
>gi|344286156|ref|XP_003414825.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Loxodonta africana]
Length = 470
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVV+R LPP+L++ LL +H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVVRRLPPTLTKEQLL----EHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|443925907|gb|ELU44664.1| smg-4/UPF3 family domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 442
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 70/149 (46%), Gaps = 28/149 (18%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+ KVVIR LPP+L +N D + W + P + SRAYVE
Sbjct: 156 KLKVVIRRLPPNLPENIFWQSVAQWVTDESSSWKLYVPENTP----------SRAYVEFV 205
Query: 66 KPAGVFEFAELLNGHVF----------VNEK-------GAQFKAIVEYAPSQRVPKPFSR 108
P V F+ NGHVF VN + G + A+VEYAP Q+VP +
Sbjct: 206 TPEAVVAFSRDYNGHVFRDKQGEFIPNVNTRTIEHSSLGNESAAVVEYAPYQKVPHEKRK 265
Query: 109 KDSREGTIFKDPDYLEFLKVIAKPAENLP 137
D++ GTI D D++ FL+ + KPAE P
Sbjct: 266 ADAKIGTIETDEDFISFLEALNKPAEPTP 294
>gi|345326166|ref|XP_001509880.2| PREDICTED: regulator of nonsense transcripts 3B-like
[Ornithorhynchus anatinus]
Length = 530
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
KVVIR LPPSL++ L +H +++F F SS Y H +SRAY+ K
Sbjct: 102 KVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDSSL---YPHM-FSRAYINFKN 153
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
+ F + +G+VF++ KG ++ AIVE+AP Q+ K S+K + GTI +DP+Y +F
Sbjct: 154 QEDIVLFRDRFDGYVFIDHKGQEYPAIVEFAPFQKSAKKKSKKKDAKTGTIDEDPEYKKF 213
Query: 126 LKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
L+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 214 LESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 257
>gi|344286154|ref|XP_003414824.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Loxodonta africana]
Length = 483
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVV+R LPP+L++ LL +H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVVRRLPPTLTKEQLL----EHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|121699958|ref|XP_001268244.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
gi|119396386|gb|EAW06818.1| nonsense-mediated mRNA decay protein Upf3, putative [Aspergillus
clavatus NRRL 1]
Length = 580
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 89/170 (52%), Gaps = 17/170 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +W+ ++PGK + ++ K R SRAY+
Sbjct: 38 RLKLLVRRLPPGLTQTEFENALGSEWAIGAGKVDWYQYKPGKIAKDHA-KPSRPSRAYIH 96
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ + ++ + F++ + ++ E++P ++P RKD+R+GTI
Sbjct: 97 VTSSEHIASLSDKVRQTPFIDSRNTVNDPVLLGPPSLEFSPYAKIPGSRVRKDARQGTID 156
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+DP+++ FL+ + +P + +E EA+ KET+ TPL++Y+
Sbjct: 157 QDPEFIAFLESLTQPI----TKPAPVESAEADEK---KETVTTTPLVQYI 199
>gi|116200009|ref|XP_001225816.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
gi|88179439|gb|EAQ86907.1| hypothetical protein CHGG_08160 [Chaetomium globosum CBS 148.51]
Length = 654
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 32/187 (17%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRY 57
K P Q KVV+R LPP++++ + + + + + + +WF + PGK S S K +
Sbjct: 29 TKAPAQGEKVVVRRLPPAMTEEEFITILGEEWKVGRGKVDWFSYWPGKVSQHPS-KPSQP 87
Query: 58 SRAYVELKKPAGVFEFAELLNGHV----------FVNEKGAQFKAIVEYAPSQRVPKPFS 107
SRAY+ + + E LL HV N+ VE+A ++ P
Sbjct: 88 SRAYIHVTR---RDELVALLQ-HVQSATWEDAKETYNDPALVSPPTVEFATYKKTPGEKK 143
Query: 108 RKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEA-----ELSGAPKETLVVTP 162
R D R+GTI +DP+++ FL+ +A P + Q E +E EL K T TP
Sbjct: 144 RVDGRQGTIDQDPEFMAFLEALANP-------DAQKEAQEGDQGVEELGKTEKTT--TTP 194
Query: 163 LMEYVRQ 169
L+EY+++
Sbjct: 195 LVEYLKE 201
>gi|320162867|gb|EFW39766.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 465
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 67/127 (52%), Gaps = 14/127 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDH----FNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
K+VIR LPP L + A+FR+ F ++ PG+ S + ++ Y+ L
Sbjct: 24 KLVIRRLPPLLDE----AVFREKHLAGFEASISYLYLVPGRLSLGPNA----FATVYITL 75
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK--DSREGTIFKDPDY 122
K P + + A+ +NGHVF + +G AI E AP QR P P R+ D + GT+ D DY
Sbjct: 76 KTPEALAQLAQQMNGHVFRDSRGTTHTAIAELAPFQRTPNPSRRRRPDPKMGTLSTDKDY 135
Query: 123 LEFLKVI 129
L F++ +
Sbjct: 136 LAFVEAL 142
>gi|255637185|gb|ACU18923.1| unknown [Glycine max]
Length = 72
Score = 78.2 bits (191), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREG 114
+SRAY++ K P VFEF E +GHVFV+E+GAQ+K IVEYAPSQ VPKP ++K +G
Sbjct: 2 HSRAYIDFKCPDDVFEFTEFFDGHVFVSERGAQYKVIVEYAPSQCVPKPSAKKMDVKG 59
>gi|225707714|gb|ACO09703.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 297
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPPSL++ +L + ++ F +S Y H ++RAY+ K
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSSDTSM---YPHL-FARAYINFKNQ 89
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDPDYLEFL 126
+ F + +G+VF++ +G ++ AIVE+AP Q++ K S+K D++ GTI +DP+Y +FL
Sbjct: 90 EDIVLFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTIDEDPEYKKFL 149
Query: 127 KVIAKPAENLPSA-EIQLERKEAELSGAPKETLVV--TPLMEYVRQKR 171
+ E S E LE E+ KE + TPL+++++ K+
Sbjct: 150 EYYNADDEKFTSTPETLLE----EIEAKSKELVAKKPTPLLDFLKNKQ 193
>gi|242209718|ref|XP_002470705.1| predicted protein [Postia placenta Mad-698-R]
gi|220730282|gb|EED84142.1| predicted protein [Postia placenta Mad-698-R]
Length = 479
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
K+ +R K V+R LPP+L +N D W + GKS + K SRA
Sbjct: 31 KQQTERLKTVVRRLPPNLPENIFWQSVEPWVREDTVTWKAYYLGKSKKRLN-KENISSRA 89
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K + F++ +GHVF ++ G + A+VE+AP Q+VP + D+R GTI KD
Sbjct: 90 YIAFKNEDVLATFSKEYDGHVFRDKAGNESIAVVEFAPYQKVPSDKKKVDTRMGTIEKDE 149
Query: 121 DYLEFLKVI 129
+Y+ FL+ +
Sbjct: 150 EYISFLESL 158
>gi|395527256|ref|XP_003765766.1| PREDICTED: regulator of nonsense transcripts 3A [Sarcophilus
harrisii]
Length = 554
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAG 69
VVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 133 VVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFCTADPSL---YPHL-YSRAYINFRNPDD 186
Query: 70 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 128
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y +FL+
Sbjct: 187 ILLFRDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYRKFLET 246
Query: 129 IAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
E + + L E+ +E + TPL+EY++ ++
Sbjct: 247 YCVEEEKISANPETL---LGEIEAKTRELIARRTTPLLEYIKNRK 288
>gi|291407875|ref|XP_002720172.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
2 [Oryctolagus cuniculus]
Length = 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|355705111|gb|EHH31036.1| Nonsense mRNA reducing factor 3B [Macaca mulatta]
gi|355757661|gb|EHH61186.1| Nonsense mRNA reducing factor 3B [Macaca fascicularis]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDCFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|449498917|ref|XP_002191655.2| PREDICTED: regulator of nonsense transcripts 3B [Taeniopygia
guttata]
Length = 446
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 90/168 (53%), Gaps = 18/168 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+VVIR LPPSL++ L +H +++F F SS Y H +SRAY+ K
Sbjct: 24 QVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDSSL---YPHM-FSRAYINFKN 75
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +F
Sbjct: 76 QEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKF 135
Query: 126 LKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
L+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 136 LESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 179
>gi|198421280|ref|XP_002130416.1| PREDICTED: similar to UPF3 regulator of nonsense transcripts
homolog B [Ciona intestinalis]
Length = 434
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 5 LQRTKVVIRHLPPSLSQN---DLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
L +TKVV+R LPP L++ +L+ H ++F F G + + + RAY
Sbjct: 24 LIQTKVVMRRLPPGLTEEQFKELIGTLPPH-----DYFRFVSGDRTLVPN----NFCRAY 74
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTIFKDP 120
+ +F+F + +GH F + G + +VE+AP Q++P+ +K D + TI +DP
Sbjct: 75 INFINTDDIFKFRDRFDGHEFEFKNGTKHPCVVEFAPFQKIPRKNRKKEDLKVDTIEQDP 134
Query: 121 DYLEFLKVI-AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
DY +FL+ + + + + E L+ E EL +V TPL +++QKR
Sbjct: 135 DYQKFLETLDEEEEKEILDVEKYLD--ELELREKKNHKMVETPLTAFIKQKR 184
>gi|363732885|ref|XP_003641170.1| PREDICTED: regulator of nonsense transcripts 3B-like [Gallus
gallus]
Length = 478
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSL++ L +H +++F F SS Y H +SRAY+ +
Sbjct: 55 SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSL---YPHV-FSRAYINFR 106
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +
Sbjct: 107 NQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKK 166
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 167 FLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 211
>gi|53136728|emb|CAG32693.1| hypothetical protein RCJMB04_32p8 [Gallus gallus]
Length = 478
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSL++ L +H +++F F SS Y H +SRAY+ +
Sbjct: 55 SKVVIRRLPPSLTREQL----EEHLQPLPEHDYFEFFANDSSL---YPHV-FSRAYINFR 106
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI DP+Y +
Sbjct: 107 NQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKK 166
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 167 FLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 211
>gi|354475717|ref|XP_003500074.1| PREDICTED: regulator of nonsense transcripts 3B-like [Cricetulus
griseus]
Length = 434
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+VVIR LPP+L++ L ++H +++F F +S Y H ++RAY+ K
Sbjct: 3 RVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFANDTSL---YPHM-FARAYINFKN 54
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEF 125
+ F + +G+VF++ KG ++ AIVE+AP Q K ++D++ GTI DP+Y +F
Sbjct: 55 QEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKRIKKRDTKVGTIDDDPEYRKF 114
Query: 126 LKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 115 LETYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFLKNKQ 159
>gi|351709915|gb|EHB12834.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 490
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTREQL----QEHLQPMAEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|291407873|ref|XP_002720171.1| PREDICTED: UPF3 regulator of nonsense transcripts homolog B isoform
1 [Oryctolagus cuniculus]
Length = 483
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|301774362|ref|XP_002922607.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 2
[Ailuropoda melanoleuca]
Length = 470
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|378732821|gb|EHY59280.1| hypothetical protein HMPREF1120_07272 [Exophiala dermatitidis
NIH/UT8656]
Length = 767
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 17/175 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
+ P R ++VIR LPP L++++ A D + + W F+ GK S + K R S
Sbjct: 34 RAPAPRLRLVIRRLPPGLTESEFWAALGDDWKVGAGKAEWAAFKSGKISKDLA-KPSRPS 92
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
RAY+++++ + + + + G F + K + E+AP ++P +R D R
Sbjct: 93 RAYIKVREQSLLDVLSAAVRGASFQDAKNTSKDPCLLGPPSLEFAPYNKIPSGRARNDGR 152
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
+GTI +D ++++FL+ + +P S LE EA+ E + +TPL++Y+
Sbjct: 153 QGTIDQDQEFIDFLQSLTQPITK--STTSVLEPGEAK-----PEKVAITPLVQYI 200
>gi|326483654|gb|EGE07664.1| nonsense-mediated mRNA decay protein [Trichophyton equinum CBS
127.97]
Length = 508
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+ +R LPP L+Q + + D++ + +WF F+ GK S S K R RAY+
Sbjct: 43 RLKLHVRRLPPGLTQAEFETVLGDYWKVGRGKVDWFLFKEGKVSTDPS-KPSRPGRAYLR 101
Query: 64 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
+ + E ++++ F N+ +EYAP RVP R D+R GTI
Sbjct: 102 VTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTID 161
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+D +++ FL+ + P PS E +E + E +TPL++Y+R+
Sbjct: 162 QDAEFIAFLESLTNPVTK-PSEEETVEAADKV------EKPTITPLIQYLRE 206
>gi|410947764|ref|XP_003980612.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3A [Felis catus]
Length = 570
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F ++ F Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEF---FTADFSLYPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K + + G+I DP+Y +FL
Sbjct: 122 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKXKDAKTGSIEDDPEYKKFL 181
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + E L ++ +E + TPL+EY+R ++
Sbjct: 182 ETYCVEEEKTNANPETLL----GDMEAKTRELIARRTTPLLEYIRNRK 225
>gi|327289668|ref|XP_003229546.1| PREDICTED: regulator of nonsense transcripts 3B-like [Anolis
carolinensis]
Length = 468
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSL++ L +H +++F F +S Y H +SRAY+ K
Sbjct: 44 SKVVIRRLPPSLTKEQL----EEHLQPLPEHDYFEFFANDTSL---YPHM-FSRAYINFK 95
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLE 124
+ F + +G+VFV+ KG ++ AIVE+AP Q K +KD++ GTI DP+Y +
Sbjct: 96 NQEDIVLFRDRFDGYVFVDHKGLEYPAIVEFAPFQKAAKKKSKKKDAKAGTIDDDPEYKK 155
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 156 FLESYSADDEKLTSTPETLLE----EIEAKNKELIAKKTTPLLNFLKNK 200
>gi|301774360|ref|XP_002922606.1| PREDICTED: regulator of nonsense transcripts 3B-like isoform 1
[Ailuropoda melanoleuca]
gi|281340900|gb|EFB16484.1| hypothetical protein PANDA_011582 [Ailuropoda melanoleuca]
Length = 483
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|118084366|ref|XP_416933.2| PREDICTED: regulator of nonsense transcripts 3A [Gallus gallus]
Length = 538
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 115 SKVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSL---YPHL-YSRAYINFRNP 168
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 169 EDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFL 228
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + + E L E+ +E + TPL+EY++ ++
Sbjct: 229 ESYCADEEKICANPETLL----GEIEAKTRELIARRTTPLLEYIKNRK 272
>gi|295665137|ref|XP_002793120.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278641|gb|EEH34207.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 592
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A D + N + +W FR GK S + K + +R Y+
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRA-KPSKPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + ++ EYAP RVP RKD R+GTI
Sbjct: 96 VTSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 156 LDSDFIAFLESLTNPVTKT-TMDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|449483599|ref|XP_002192806.2| PREDICTED: regulator of nonsense transcripts 3A [Taeniopygia
guttata]
Length = 559
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 136 SKVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSL---YPHL-YSRAYINFRNP 189
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 190 EDILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFL 249
Query: 127 K-VIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ A + + EI L E+ +E + TPL+EY++ ++
Sbjct: 250 ENYCADEDKICANPEILL----GEIEAKTRELIARRTTPLLEYIKNRK 293
>gi|388490053|ref|NP_001253666.1| regulator of nonsense transcripts 3B [Macaca mulatta]
gi|387539430|gb|AFJ70342.1| regulator of nonsense transcripts 3B isoform 2 [Macaca mulatta]
Length = 470
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|345559857|gb|EGX42988.1| hypothetical protein AOL_s00215g774 [Arthrobotrys oligospora ATCC
24927]
Length = 642
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 57/205 (27%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGK--------SSFFYSYKHQRYSR 59
K+VIRHLP S+++ + L D N D W F PGK ++F ++ R +
Sbjct: 51 KIVIRHLPASMTEQEYNVLTADVINKDTVEWSSFIPGKVPQDRNKPTTFSIAHARARSTE 110
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--KPFSRKDSREGTIF 117
+++K AG LNG + +G ++ VE+AP Q+ P K R D+R GTI
Sbjct: 111 TLIQIK--AG-------LNGKPLTDSRGQEYAVQVEFAPFQKFPQQKGRLRHDARSGTID 161
Query: 118 KDPDYLEFL----------------------------KVIAKP-AENLPSAEIQLERKEA 148
DPD++ FL KV P A +PS E +
Sbjct: 162 NDPDFIFFLENLKHTGPNASSSAKTEGDGDKSKEKETKVYKDPLAAPVPSYEAPIME--- 218
Query: 149 ELSGAPKETLVVTPLMEYVRQKRAA 173
P + TPL+E+++Q++ A
Sbjct: 219 -----PGSKVTTTPLVEFIKQQKLA 238
>gi|403170199|ref|XP_003329584.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168605|gb|EFP85165.2| hypothetical protein PGTG_11334 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 490
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSY----------K 53
+RTK+V+RHLPPSL + R + P ++ F SY K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 54 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 113
+ SRAY++ P V EF + F + G VE+AP Q+V P + DSR
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 173
GTI D DY FL + N P E + + + E +TPL+E++R R A
Sbjct: 123 GTIDTDHDYQAFLARL-----NAPVPEPNTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
Query: 174 ESGAQESLAVGRVGRRSRAASASKTSS 200
AQE+ + R +AA+++K++S
Sbjct: 178 ---AQEAALTAKQQR--QAATSAKSTS 199
>gi|193787549|dbj|BAG52755.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|358414874|ref|XP_002701034.2| PREDICTED: regulator of nonsense transcripts 3A [Bos taurus]
gi|359071208|ref|XP_002692049.2| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Bos
taurus]
Length = 512
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSL---YPHL-YSRAYINFRNP 120
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 121 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL 180
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + E ++ +E + TPL+EY++ ++
Sbjct: 181 ETYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 224
>gi|426236951|ref|XP_004012426.1| PREDICTED: regulator of nonsense transcripts 3A [Ovis aries]
Length = 487
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 41 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSL---YPHL-YSRAYINFRNP 94
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 95 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFL 154
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + E ++ +E + TPL+EY++ ++
Sbjct: 155 ETYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 198
>gi|12711674|ref|NP_075386.1| regulator of nonsense transcripts 3B isoform 2 [Homo sapiens]
gi|397469623|ref|XP_003806445.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Pan
paniscus]
gi|426397254|ref|XP_004064838.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Gorilla
gorilla gorilla]
gi|12232324|gb|AAG48511.1| hUPF3B [Homo sapiens]
gi|119610251|gb|EAW89845.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
gi|119610252|gb|EAW89846.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_c [Homo sapiens]
Length = 470
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|402911263|ref|XP_003918256.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Papio
anubis]
Length = 470
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|18375528|ref|NP_542199.1| regulator of nonsense transcripts 3B isoform 1 [Homo sapiens]
gi|397469625|ref|XP_003806446.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Pan
paniscus]
gi|426397256|ref|XP_004064839.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Gorilla
gorilla gorilla]
gi|60390643|sp|Q9BZI7.1|REN3B_HUMAN RecName: Full=Regulator of nonsense transcripts 3B; AltName:
Full=Nonsense mRNA reducing factor 3B; AltName:
Full=Up-frameshift suppressor 3 homolog B; Short=hUpf3B;
AltName: Full=Up-frameshift suppressor 3 homolog on
chromosome X; Short=hUpf3p-X
gi|12620408|gb|AAG60691.1|AF318576_1 UPF3X [Homo sapiens]
gi|119610248|gb|EAW89842.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
gi|119610250|gb|EAW89844.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_a [Homo sapiens]
Length = 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|111307687|gb|AAI21018.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Homo
sapiens]
Length = 470
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|338729627|ref|XP_001915031.2| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B-like [Equus caballus]
Length = 534
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 103 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 154
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 155 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 214
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 215 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 260
>gi|402911265|ref|XP_003918257.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Papio
anubis]
Length = 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|441674950|ref|XP_004092554.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Nomascus leucogenys]
Length = 483
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|296481607|tpg|DAA23722.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 1
[Bos taurus]
Length = 508
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSL---YPHL-YSRAYINFRNP 120
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 121 DDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL 180
Query: 127 KVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + E ++ +E + TPL+EY++ ++
Sbjct: 181 ETYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNRK 224
>gi|417401480|gb|JAA47625.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 469
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|431921495|gb|ELK18861.1| Regulator of nonsense transcripts 3B [Pteropus alecto]
Length = 479
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|74008224|ref|XP_864470.1| PREDICTED: regulator of nonsense transcripts 3B isoform 3 [Canis
lupus familiaris]
Length = 468
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|296189035|ref|XP_002742608.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1
[Callithrix jacchus]
Length = 472
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 122 DDILLFRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL 181
Query: 127 KVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + EI L E+ +E + TPL+EY++ ++
Sbjct: 182 ETYCVEEEKTSTNPEILL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|74008230|ref|XP_851843.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Canis
lupus familiaris]
Length = 481
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|417401726|gb|JAA47733.1| Putative nonsense-mediated decay protein upf3 [Desmodus rotundus]
Length = 482
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|226293588|gb|EEH49008.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 591
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A D + N + +W FR GK S + K + +R Y+
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRA-KPSKPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + ++ EYAP RVP RKD R+GTI
Sbjct: 96 VTSTPLVEELSEKVRQLSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRKDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 156 LDSDFIAFLESLTNPVTKT-TVDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|395848846|ref|XP_003797053.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Otolemur
garnettii]
Length = 470
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ +
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFR 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|328773377|gb|EGF83414.1| hypothetical protein BATDEDRAFT_84963 [Batrachochytrium
dendrobatidis JAM81]
Length = 510
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
P RTK+V+R LPP+L ++ D +W + GK + + K +SRAY+
Sbjct: 56 PKLRTKIVVRRLPPTLPRDAFFNTISKWL-DYIDWSEYVSGKLAKKLA-KQNVFSRAYLN 113
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
V +F + NGH+FV+ KG + +A+VE+AP QR K D T+ D DY
Sbjct: 114 FIDCDSVLDFFKSCNGHLFVDSKGNEHRAVVEFAPFQRFCKQRKTIDPLVNTLDADADYQ 173
Query: 124 EFLK 127
FL+
Sbjct: 174 AFLQ 177
>gi|242803385|ref|XP_002484163.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|242803390|ref|XP_002484164.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717508|gb|EED16929.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218717509|gb|EED16930.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 579
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K++IR LPP L+Q + D + + +WF F+ GK S + K R +
Sbjct: 31 KVPAPRLKLIIRRLPPGLTQAEFETGLGDDWKVGRGKIDWFQFKSGKISKDPA-KPSRPA 89
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSR 112
RAYV + + +E + F + + + VE+AP RVP SRKD R
Sbjct: 90 RAYVHVLSEEIIASLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPYARVPGSRSRKDGR 149
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+GTI +DP+++ FL+ + P + E E +E + +TPL++Y+++K+A
Sbjct: 150 QGTIDQDPEFVAFLESLTNPI-------TKPGPVEGETEKKEEEEITITPLVQYIKEKKA 202
Query: 173 AES 175
+++
Sbjct: 203 SKA 205
>gi|395848848|ref|XP_003797054.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Otolemur
garnettii]
Length = 483
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ +
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFR 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|403279151|ref|XP_003931128.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|410989267|ref|XP_004000884.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Felis
catus]
Length = 472
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|403279153|ref|XP_003931129.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Saimiri
boliviensis boliviensis]
Length = 483
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|410989269|ref|XP_004000885.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Felis
catus]
Length = 485
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|311276863|ref|XP_003135388.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Sus
scrofa]
Length = 470
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|311276861|ref|XP_003135389.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Sus
scrofa]
Length = 483
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|440913116|gb|ELR62611.1| Regulator of nonsense transcripts 3B [Bos grunniens mutus]
Length = 483
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|432111537|gb|ELK34655.1| Regulator of nonsense transcripts 3B [Myotis davidii]
Length = 483
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|426257651|ref|XP_004022438.1| PREDICTED: regulator of nonsense transcripts 3B isoform 2 [Ovis
aries]
Length = 470
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|426257649|ref|XP_004022437.1| PREDICTED: regulator of nonsense transcripts 3B isoform 1 [Ovis
aries]
Length = 483
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|85081441|ref|XP_956721.1| hypothetical protein NCU03435 [Neurospora crassa OR74A]
gi|9368552|emb|CAB98213.1| related to nucleolar phosphoprotein [Neurospora crassa]
gi|28917796|gb|EAA27485.1| predicted protein [Neurospora crassa OR74A]
Length = 822
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVV+R LPP L++ + + D + + + +WF + PGKSS Q+ +
Sbjct: 37 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSS------QQKDDLLVLSQA 90
Query: 66 KPAGVFEFA-ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
GV+E A E N V VE + +++P R D+R+GTI ++P+++
Sbjct: 91 VQNGVWEDAKESYNDPVL------NLPPTVELSIHKKIPSDKKRVDNRQGTIDQEPEFMA 144
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
FL+ +A P + + + E E S P E + TPL+EY+++K+A
Sbjct: 145 FLESLANPDAHK-TTDTAGEPNAEETSAKP-EKVTTTPLVEYLKEKKA 190
>gi|67516447|ref|XP_658109.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|40747448|gb|EAA66604.1| hypothetical protein AN0505.2 [Aspergillus nidulans FGSC A4]
gi|259489240|tpe|CBF89348.1| TPA: nonsense-mediated mRNA decay protein Upf3, putative
(AFU_orthologue; AFUA_6G11460) [Aspergillus nidulans
FGSC A4]
Length = 590
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYS----YKHQRYSR 59
R K+++R LPP L+Q + + R +W ++PGK S + K R SR
Sbjct: 37 RLKLLVRRLPPGLTQEEFETALGAEWKLGAGRVSWAQYKPGKVSKDHGNHSPAKPSRPSR 96
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSRE 113
AY+ + + ++ + F++ + ++ E+AP ++P RKD+R
Sbjct: 97 AYLYVVSSEHIAPLSDKVRSTSFLDARNTANDPVLLGPPNLEFAPYAKIPGSRVRKDARL 156
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
GTI +DP++++FL+ + +P AE E ++ KET+ TPL++Y+
Sbjct: 157 GTIDQDPEFIQFLESLTQPITKPTLAETSAEGEDK------KETVTTTPLVQYI 204
>gi|444515324|gb|ELV10830.1| Regulator of nonsense transcripts 3B [Tupaia chinensis]
Length = 606
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHV-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
FL+ A E + S E LE E+ +E + TPL+ +++ K
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNK 207
>gi|149599397|ref|XP_001506340.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial
[Ornithorhynchus anatinus]
Length = 379
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPP+L++ L H +++F F S Y H Y+RAY+ + P
Sbjct: 14 QVVIRRLPPTLTKEQLEEQL--HPLPAHDYFEFCAADPSL---YPHL-YTRAYINFRNPD 67
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 127
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + GTI +DP+Y +FL+
Sbjct: 68 DILLFRDRFDGYVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGTIEEDPEYRKFLE 127
Query: 128 VIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
E + + L E+ +E + TPL+EY+R ++
Sbjct: 128 TYCVDEEKISANPETL---LGEIEAKTRELIARRTTPLLEYIRSRK 170
>gi|367054148|ref|XP_003657452.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
gi|347004718|gb|AEO71116.1| hypothetical protein THITE_2123179 [Thielavia terrestris NRRL 8126]
Length = 729
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRY 57
+K P+Q KVV+R LPP +++ + + + D + + R +WF + PGK S S K R
Sbjct: 29 VKAPMQGEKVVVRRLPPGMTEEEFVTILGDEWAVGHGRVDWFSYWPGKVSKHPS-KPSRP 87
Query: 58 SRAYVELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDS 111
+RAY+ + + + + + + + N+ VE+A +++P R D
Sbjct: 88 ARAYLHVTRRDLLTALLQTVQSNKWEDAKETYNDPALVSLPTVEFATYKKIPSGKKRVDG 147
Query: 112 REGTIFKDPDYLEFLKVIAKPAEN 135
R+GTI +DP+++ FL+ +A P N
Sbjct: 148 RQGTIDQDPEFMAFLEGLANPDVN 171
>gi|336468834|gb|EGO56997.1| hypothetical protein NEUTE1DRAFT_65951 [Neurospora tetrasperma FGSC
2508]
gi|350288875|gb|EGZ70100.1| hypothetical protein NEUTE2DRAFT_91209 [Neurospora tetrasperma FGSC
2509]
Length = 814
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVV+R LPP L++ + + D + + + +WF + PGKSS Q+ +
Sbjct: 38 KVVVRRLPPLLTEEEFFKILGDEWKVGHGKVDWFSYWPGKSS------QQKDDLLVLSQA 91
Query: 66 KPAGVFEFA-ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
GV+E A E N V VE + +++P R D+R+GTI ++P+++
Sbjct: 92 VQNGVWEDAKESYNDPVL------NLPPTVELSIHKKIPSDKKRLDNRQGTIDQEPEFMA 145
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
FL+ +A P + + + E E S P E + TPL+EY+++K+A
Sbjct: 146 FLESLANPDAHK-TTDTAGEPNAEETSAKP-EKVTTTPLVEYLKEKKA 191
>gi|302828730|ref|XP_002945932.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
gi|300268747|gb|EFJ52927.1| hypothetical protein VOLCADRAFT_48819 [Volvox carteri f.
nagariensis]
Length = 90
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR+LPP ++ + + RY W + PGK S K +SRAYV
Sbjct: 1 TKVVIRNLPPGMTDDTFKTVLESLAGGRYTWLSYFPGKVSL----KRVVFSRAYVNFLTA 56
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR 101
V++F + +GHVF+ +KG Q++ VEYAP Q+
Sbjct: 57 EDVYDFKQRFDGHVFIGQKGHQYRCSVEYAPLQK 90
>gi|327309448|ref|XP_003239415.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
gi|326459671|gb|EGD85124.1| hypothetical protein TERG_01400 [Trichophyton rubrum CBS 118892]
Length = 604
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
+ R K+ +R LPP L+Q + D++ R +WF F+ GK S S K R RAY
Sbjct: 40 VPRLKLHVRRLPPGLTQAEFETTLGDYWKVGRGRVDWFLFKAGKVSTDPS-KPSRPGRAY 98
Query: 62 VELKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGT 115
+ + + E ++++ F N+ +EYAP RVP R D+R GT
Sbjct: 99 LRVTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGT 158
Query: 116 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
I +D +++ FL+ + P PS E E + E +TPL++Y+
Sbjct: 159 IDQDAEFISFLESLTNPVTK-PSEEETTEAADRV------EKQTITPLIQYL 203
>gi|225680260|gb|EEH18544.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 612
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 18/175 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L+ + A D + N + +W FR GK S + K + +R Y+
Sbjct: 37 RLKLLIRRLPPGLTYQEFEASLGDEWKVGNGKVDWLQFRDGKISKDRA-KPSKPTRVYLR 95
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
+ V E +E + F + + ++ EYAP RVP R+D R+GTI
Sbjct: 96 VTSTPLVEELSEKVRQSSFQDAQNTSRDPVLLGPPALEYAPYPRVPGSRVRQDGRQGTID 155
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
D D++ FL+ + P + +I E + E S +TPL++++R+K+A
Sbjct: 156 LDSDFIAFLESLTNPVTKT-TVDISAEDAKEEKS-------TITPLIQFLREKKA 202
>gi|297694522|ref|XP_002824527.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Pongo
abelii]
Length = 476
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F E +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 121 PDDILLFRERFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 180
Query: 126 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 181 LETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|449276361|gb|EMC84924.1| Regulator of nonsense transcripts 3A, partial [Columba livia]
Length = 381
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 1 QVVIRRLPPCLTKEQLEEQL--HPLPAHDYFEFCTADPSL---YPHL-YSRAYINFRNPE 54
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 127
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 55 DILLFRDRFDGYVFIDNKGLEYPAVVEFAPFQKISKKKLKKKDTKAGSIEDDPEYRKFLE 114
Query: 128 VIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
E + + EI L E+ +E + TPL+EY++ ++
Sbjct: 115 SYCADEEKICANPEILL----GEIEAKTRELIARRTTPLLEYIKNRK 157
>gi|348515441|ref|XP_003445248.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oreochromis
niloticus]
Length = 464
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPPSL++ +L + ++ F +S Y H ++RAY+ K
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSNDTSL---YPHL-FARAYINFKNQ 89
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ +G ++ AIVE+AP Q+ K S+K + GTI +DPDY +FL
Sbjct: 90 EDIVLFRDRFDGYVFIDNRGQEYPAIVEFAPFQKTAKKRSKKKDAKCGTIVEDPDYKKFL 149
Query: 127 KVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E L S E LE E+ KE + TPL+++++ K+
Sbjct: 150 EYYNGDDEKLTSTPETLLE----EIEAKSKELVAKKTTPLLDFLKNKQ 193
>gi|449546075|gb|EMD37045.1| hypothetical protein CERSUDRAFT_95309 [Ceriporiopsis subvermispora
B]
Length = 501
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
R K V+R LPP+L + + + W + GK + K SRAY+ K
Sbjct: 38 RFKTVVRRLPPNLPEEIFWQSVQKWVTEETIQWKIYYQGKFKTRMN-KENIQSRAYIAFK 96
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEF 125
+ F+ +GH+F ++ G + A+VE+AP Q++P + DSR GTI KD DY+ F
Sbjct: 97 NEEILATFSREYDGHLFRDKAGNESSAVVEFAPFQKIPSEKKKVDSRMGTIEKDEDYISF 156
Query: 126 LKVIAKPA 133
L+ + PA
Sbjct: 157 LESLNNPA 164
>gi|440632753|gb|ELR02672.1| hypothetical protein GMDG_05626 [Geomyces destructans 20631-21]
Length = 467
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 30/223 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVV+R L P+L++ + + + D + R +WF ++PGK S S K R SRAY+ L
Sbjct: 35 KVVVRRLAPALTETEFMKIIGDEWKVGAGRVDWFSYKPGKVSTDPS-KASRPSRAYLHL- 92
Query: 66 KPAGVFE-FAELLNGHV--FVNEKGAQF--------KAIVEYAPSQRVPKPFSRKDSREG 114
+ E + L+ HV E A+ A +EY R+P R D+R+G
Sbjct: 93 ----INEPYLTQLSNHVRQLTFEDAAKTFTNPCLLGPASLEYTSYARIPSGKRRTDARQG 148
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 174
TI DP++++FL+ +A P + E E G E + TPL++Y++ K+A +
Sbjct: 149 TIDLDPEFMDFLESLANP------KSTKGEDTEPSTKG---EKVTTTPLVQYLKDKKANK 199
Query: 175 SGAQESLAVGRVGR-RSRAASASKTSSTTTKRGSEKKKYILKD 216
S + + R S+AASAS S + E K KD
Sbjct: 200 SKEAAAAKAAKQSRLESQAASASGKSKSKEGAADEPHKKTPKD 242
>gi|302499969|ref|XP_003011979.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
gi|291175534|gb|EFE31339.1| nonsense-mediated mRNA decay protein Upf3, putative [Arthroderma
benhamiae CBS 112371]
Length = 604
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+ +R LPP L+Q + D + + +WF F+ GK S S K R RAY+
Sbjct: 41 RLKLHVRRLPPGLTQAEFETTLGDFWKVGRGKVDWFLFKEGKVSTDPS-KPSRPGRAYLR 99
Query: 64 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
+ + E ++++ F N+ +EYAP RVP R D+R GTI
Sbjct: 100 VTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTID 159
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+D +++ FL+ + P PS E E + E +TPL++Y+R+
Sbjct: 160 QDAEFIAFLESLTNPVTK-PSEEETTEAADKV------EKPTITPLIQYLRE 204
>gi|397524434|ref|XP_003832196.1| PREDICTED: regulator of nonsense transcripts 3A [Pan paniscus]
Length = 576
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 168 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 220
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 221 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 280
Query: 126 LKVI----AKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
L+ K + N + ++E K EL TPL+EY++ ++
Sbjct: 281 LETYWVEEEKTSANPETLLGEMEAKTRELI-----ARRTTPLLEYIKNRK 325
>gi|296236280|ref|XP_002807957.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Callithrix jacchus]
Length = 478
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 92/169 (54%), Gaps = 18/169 (10%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+VVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 50 QVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFKN 101
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +F
Sbjct: 102 QEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKRKTKKRDTKVGTIDDDPEYRKF 161
Query: 126 LKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 162 LESYAMDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 206
>gi|432094447|gb|ELK26013.1| Regulator of nonsense transcripts 3A [Myotis davidii]
Length = 665
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 16/167 (9%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAG 69
VVIR LPPSL++ L H +++F F G S Y H YSRAY+ + P
Sbjct: 254 VVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTGDLSL---YPHL-YSRAYINFRNPDD 307
Query: 70 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 128
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 308 ILLFRDRFDGYIFIDNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIDDDPEYKKFLET 367
Query: 129 IA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
K + N + +E K EL TPL+EY++ ++
Sbjct: 368 YCVEEEKTSANPETLLGDIEAKTRELIAR-----RTTPLLEYIKNRK 409
>gi|115497252|ref|NP_001069879.1| regulator of nonsense transcripts 3B [Bos taurus]
gi|83405772|gb|AAI11354.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Bos
taurus]
gi|296471325|tpg|DAA13440.1| TPA: UPF3 regulator of nonsense transcripts homolog B [Bos taurus]
Length = 307
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYAADNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|169862567|ref|XP_001837910.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
gi|116501031|gb|EAU83926.1| hypothetical protein CC1G_10331 [Coprinopsis cinerea okayama7#130]
Length = 602
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 8/199 (4%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+R K V+R LPP+L ++ + + W + PGK K SRAY+
Sbjct: 33 ERLKTVVRRLPPNLPEDIFWQTVKPWVTEETATWKVYYPGKFKK-RDNKENIPSRAYIAF 91
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
K + F+ +GH+F ++ G + AIVE+AP Q+VP + D++ TI KD DY+
Sbjct: 92 KNEELLATFSREFDGHLFKDKAGNESYAIVEFAPYQKVPSEKRKPDTKNATIEKDDDYIS 151
Query: 125 FLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLAVG 184
F++ + A N I PK TPL+E ++ +++A+ +E++
Sbjct: 152 FIESLNA-ATNTEPVTIDALLAATRPPSPPK----TTPLLEALKAEKSAQKD-KEAILRN 205
Query: 185 RVGRRSRAASASKTSSTTT 203
+ +A A+ T TT+
Sbjct: 206 HAHYKDQANLAAVTGVTTS 224
>gi|402902529|ref|XP_003914153.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Papio
anubis]
Length = 463
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +F
Sbjct: 121 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKF 180
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ + E + L E+ +E + TPL+EY++ ++
Sbjct: 181 LETYSVEEEKTSANPETL---LGEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|302661624|ref|XP_003022478.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
gi|291186424|gb|EFE41860.1| nonsense-mediated mRNA decay protein Upf3, putative [Trichophyton
verrucosum HKI 0517]
Length = 659
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+ +R LPP L+Q + D + + +WF F+ GK S S K R RAY+
Sbjct: 95 RLKLHVRRLPPGLTQAEFETTLGDCWKVGRGKVDWFLFKEGKVSTDPS-KPSRPGRAYLR 153
Query: 64 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
+ + E ++++ F N+ +EYAP RVP R D+R GTI
Sbjct: 154 VTSSVTIPELSDVIRQTTFHDARNTYNDSALLGPPTLEYAPFSRVPSGKVRNDARVGTID 213
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+D +++ FL+ + P PS E E + E +TPL++Y+R+
Sbjct: 214 QDAEFIAFLESLTNPVTK-PSEEETTEAADK------VEKPTITPLIQYLRE 258
>gi|12711676|ref|NP_075387.1| regulator of nonsense transcripts 3A isoform hUpf3p [Homo sapiens]
gi|60390646|sp|Q9H1J1.1|REN3A_HUMAN RecName: Full=Regulator of nonsense transcripts 3A; AltName:
Full=Nonsense mRNA reducing factor 3A; AltName:
Full=Up-frameshift suppressor 3 homolog A; Short=hUpf3
gi|12232322|gb|AAG48510.1| hUPF3A [Homo sapiens]
gi|119629653|gb|EAX09248.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_b [Homo sapiens]
Length = 476
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 121 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 180
Query: 126 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 181 LETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|426376075|ref|XP_004054834.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Gorilla
gorilla gorilla]
Length = 476
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 121 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 180
Query: 126 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 181 LETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|165971526|gb|AAI58354.1| upf3b protein [Xenopus (Silurana) tropicalis]
Length = 231
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 90/171 (52%), Gaps = 20/171 (11%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+KVVIR LPPSL++ L L DH ++F F SS F +SRAY+
Sbjct: 37 SKVVIRRLPPSLTKEQLEEHLQPLPDH-----DYFEFFSNDSSLF----PHMFSRAYINF 87
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYL 123
K + F + +G+VF++ +G ++ AIVE+AP Q+V K S+K + GTI DP+Y
Sbjct: 88 KSQDDIVLFRDRFDGYVFIDHRGQEYPAIVEFAPFQKVAKKKSKKKDSKIGTIEDDPEYK 147
Query: 124 EFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+FL E L S E LE E+ KE + TPL+ +++ ++
Sbjct: 148 KFLDSYTLDEEKLTSTPETLLE----EIEAKNKEMIAKKTTPLLSFLKNRQ 194
>gi|67971906|dbj|BAE02295.1| unnamed protein product [Macaca fascicularis]
Length = 459
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +F
Sbjct: 121 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKF 180
Query: 126 LKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + L E+ +E + TPL+EY++ ++
Sbjct: 181 LETYCVEEEKTSTNPETL---LGEMEAKTRELIARRTTPLLEYIKNRK 225
>gi|403180084|ref|XP_003338377.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375165806|gb|EFP93958.2| hypothetical protein PGTG_19888, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 273
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSY----------K 53
+RTK+V+RHLPPSL + R + P ++ F SY K
Sbjct: 3 ERTKLVVRHLPPSLPEEVFWKTLSRWLEPIPREDGTLDPPRCTATFKSYVPGKTRRNKTK 62
Query: 54 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE 113
+ SRAY++ P V EF + F + G VE+AP Q+V P + DSR
Sbjct: 63 VEIPSRAYIQFATPDQVVEFHQGYASQAFRDSHGNVTFPKVEFAPYQKVAGPPKKIDSRI 122
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 173
GTI D DY FL + N P E + + + E +TPL+E++R R A
Sbjct: 123 GTIDTDHDYQAFLARL-----NAPVPEPSTNPDKPDEAPEKVERPEITPLIEHLRNARQA 177
Query: 174 ESGAQESLAVGRVGRRSRAASASKTSS 200
AQE+ + R +AA+++K++S
Sbjct: 178 ---AQEAALTAKQQR--QAATSAKSTS 199
>gi|432931218|ref|XP_004081608.1| PREDICTED: regulator of nonsense transcripts 3A-like [Oryzias
latipes]
Length = 462
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP+LS+ L + Y++F F S Y H +SRAY+ K
Sbjct: 45 SKVVIRRLPPNLSKEQLEEQLSPLPS--YDYFEFFSADQSL---YPHL-FSRAYINFKNT 98
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I +DP+Y FL
Sbjct: 99 EDIVLFRDRFDGYVFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYRRFL 158
Query: 127 KVIAKPAE-NLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E ++ + E L E+ KE + TPL+EY++ K+
Sbjct: 159 ENYSCDEEKSMANPETLL----GEIEAKTKELIAKRTTPLLEYIKIKK 202
>gi|355727800|gb|AES09314.1| UPF3 regulator of nonsense transcripts-like protein A [Mustela
putorius furo]
Length = 396
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L A + +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEAQLQPL--PAHDYFEFFTADLSL---YPHL-YSRAYINFRDP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ G ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 122 DDILLFRDRFDGYIFIDSTGLEYPAVVEFAPFQKIAKKKIKKKDAKTGSIEDDPEYKKFL 181
Query: 127 KVIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ KP N + +E K EL TPL+EY+R ++
Sbjct: 182 ETYCVEEEKPNANPETLLGDIEAKTRELIAR-----RTTPLLEYIRNRK 225
>gi|212539920|ref|XP_002150115.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
gi|210067414|gb|EEA21506.1| nonsense-mediated mRNA decay protein Upf3, putative [Talaromyces
marneffei ATCC 18224]
Length = 570
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++IR LPP L++ + D + + +WF F+PGK S K R +RAYV
Sbjct: 33 RLKLIIRRLPPGLTRAEFETGLGDDWKIGRGKIDWFQFKPGKISK-DPAKPSRPARAYVH 91
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAI------VEYAPSQRVPKPFSRKDSREGTIF 117
+ + +E + F + + + VE+AP RVP SRKD R+GTI
Sbjct: 92 VLSEEIISSLSEKVRATSFHDARNTSNDPVLLGPPSVEFAPFARVPGSRSRKDGRQGTID 151
Query: 118 KDPDYLEFLKVIAKP 132
+DP+++ FL+ + P
Sbjct: 152 QDPEFVAFLESLTNP 166
>gi|41055672|ref|NP_957248.1| regulator of nonsense transcripts 3B [Danio rerio]
gi|33416419|gb|AAH55632.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
gi|240248227|emb|CAX18773.1| UPF3 regulator of nonsense transcripts homolog B (yeast) [Danio
rerio]
Length = 467
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 90/169 (53%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPP+L++ DL + ++ F +S F ++RAY+ K
Sbjct: 37 TKIVIRRLPPTLTKEDLEEQLQPL--PELDYLEFFSSDTSLFPHL----FARAYLNFKNQ 90
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKDSREGTIFKDPDYLEFL 126
+ F + +G+VF++ +G ++ AIVE+AP Q K +KD++ GTI D DY +FL
Sbjct: 91 DDIVLFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKKRSKKKDAKSGTIDDDADYKKFL 150
Query: 127 KVIAKPAENLPS-AEIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 171
+ E PS EI LE EA ELS + TPL+++++ K+
Sbjct: 151 EFYNGDEEKSPSNPEILLEEIEAKTKELS-----SKKTTPLLDFLKNKQ 194
>gi|406702092|gb|EKD05159.1| hypothetical protein A1Q2_00545 [Trichosporon asahii var. asahii
CBS 8904]
Length = 375
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
K P R K+V+R LPP+L + ++ + + W + G+ + H +SRAY
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVV-EPWTSGALWKRYVQGRPGDNFG-AHPVHSRAY 61
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDP 120
V + A + F +GH+F ++ G +F+A+VE+AP ++ P + +KD+++GTI D
Sbjct: 62 VLMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DN 119
Query: 121 DYLEFL 126
DYL FL
Sbjct: 120 DYLSFL 125
>gi|401888523|gb|EJT52479.1| hypothetical protein A1Q1_03995 [Trichosporon asahii var. asahii
CBS 2479]
Length = 374
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 5/126 (3%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAY 61
K P R K+V+R LPP+L + ++ + + W + G+ + H +SRAY
Sbjct: 4 KAPAPRLKLVVRRLPPTLPEATFWSVV-EPWTSGALWKRYVQGRPGDNFG-AHPVHSRAY 61
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP-KPFSRKDSREGTIFKDP 120
V + A + F +GH+F ++ G +F+A+VE+AP ++ P + +KD+++GTI D
Sbjct: 62 VLMPDVASIVAFHTAFDGHLFRSKTGQEFQAVVEFAPVEKTPYRVKEKKDAKQGTI--DN 119
Query: 121 DYLEFL 126
DYL FL
Sbjct: 120 DYLSFL 125
>gi|12620406|gb|AAG60690.1|AF318575_1 UPF3 [Homo sapiens]
Length = 452
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 44 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 97
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL
Sbjct: 98 DDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFL 157
Query: 127 KVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 158 ETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 201
>gi|313227796|emb|CBY22944.1| unnamed protein product [Oikopleura dioica]
Length = 322
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 12/166 (7%)
Query: 6 QRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
Q+TKV IR LPP L++ +L L H ++F F +S ++ +RAY+
Sbjct: 5 QQTKVTIRRLPPDLTEPELKEILGQLPPH-----DYFKFHKADASLAPAH----TTRAYI 55
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDY 122
+ V EF + +G +F +++G ++ A +E A S +P+ R D GTI D D+
Sbjct: 56 KFVSFEDVIEFRDNFDGRIFEDKRGHKYMAQIELAISSLIPRGKQRDDRHCGTIEDDEDF 115
Query: 123 LEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 168
EF + + I+ KEA ++ + TPL+++VR
Sbjct: 116 KEFKEAYEADKPEVQQINIEEYLKEAAAKEEERKKPMTTPLIDFVR 161
>gi|193610839|ref|XP_001942591.1| PREDICTED: hypothetical protein LOC100159460 [Acyrthosiphon pisum]
Length = 446
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 32/194 (16%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----RYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
KVV+R LPP++++ L N+ +N+ F PG + H SR Y+
Sbjct: 41 KVVVRRLPPTMTEERFL-------NEVSPLPEFNYMYFIPG-DLHAVPFHH---SRVYIN 89
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
K ++ F + +G+VFV++ G ++ A VE AP QR+PK KD+ G I ++P +L
Sbjct: 90 FLKEDDMYMFTDKFDGYVFVDDTGDEYPATVELAPYQRIPKKKLDKDANWGKIHENPVFL 149
Query: 124 EFLKVIAKPAENLPSAEIQLERKEAE-----LSGAPKETLVVTPLMEYVRQKRAAESGAQ 178
EF + N I K + + +E + TPL+EY+ A ++ Q
Sbjct: 150 EFKR-------NFEQKTIDTTLKTTQHFFESVEDKSQEQDLSTPLLEYL----AKQNDKQ 198
Query: 179 ESLAVGRVGRRSRA 192
R RR +
Sbjct: 199 RVRVNQRDERRKKV 212
>gi|332264282|ref|XP_003281173.1| PREDICTED: regulator of nonsense transcripts 3A isoform 1 [Nomascus
leucogenys]
Length = 477
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + F ++ Y H YSRAY+ +
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEIF------AADLSLYPHL-YSRAYINFRN 121
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEF 125
P + F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +F
Sbjct: 122 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 181
Query: 126 LKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
L+ E + E L E+ +E + TPL+EY++ ++
Sbjct: 182 LETYCVEEEKTSANPETLL----GEMEAKTRELIARRTTPLLEYIKNRK 226
>gi|111309183|gb|AAI21019.1| UPF3B protein [Homo sapiens]
Length = 218
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKRAAESGAQESL 181
FL+ A E + S E LE E+ +E + TPL+ +++ K+ +E
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQRMREEKREDF 218
>gi|119610249|gb|EAW89843.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Homo sapiens]
Length = 292
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|380793431|gb|AFE68591.1| regulator of nonsense transcripts 3B isoform 1, partial [Macaca
mulatta]
Length = 228
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 93/170 (54%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRK 162
Query: 125 FLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
FL+ A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 163 FLESYATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 208
>gi|406863684|gb|EKD16731.1| nonsense-mediated mRNA decay protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 589
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 26/181 (14%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
+ K V+R L P L++++ ++ + + + +WF ++PGK S S K + SRAY
Sbjct: 35 KLKTVVRRLAPGLTEDEFTSVLGEEWKAGQGKVDWFLYKPGKESKDAS-KPSKPSRAYFH 93
Query: 64 LKKPAGVFEFAELLNGHVF------VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
L + ++ + F N VE+AP R P R D+R GTI
Sbjct: 94 LTSETHLLSLSDHVRQSNFEDALNTFNSACLIGPPTVEFAPYGRTPAGRRRVDARAGTID 153
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEA------ELSGAPKETLVVTPLMEYVRQKR 171
+DP+++ FL+ +A P KEA +L A +E + +TPL++ ++ K+
Sbjct: 154 QDPEFMAFLEQLANPTTG----------KEANGDSQFDLGTAKQEKVTMTPLVQALKDKK 203
Query: 172 A 172
A
Sbjct: 204 A 204
>gi|71003399|ref|XP_756380.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
gi|46095817|gb|EAK81050.1| hypothetical protein UM00233.1 [Ustilago maydis 521]
Length = 559
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 78/149 (52%), Gaps = 31/149 (20%)
Query: 53 KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV----PKPFSR 108
K +++RAYV + +F + +GH+F + +G + AIVE+AP Q+V P+ +R
Sbjct: 216 KQNKHARAYVRFLDAQMLVQFYKAFDGHIFRDSRGNESIAIVEFAPYQKVVVSTPRTGTR 275
Query: 109 K-------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAEL-------SGAP 154
D+++GTI KD DY FL E L A+ Q++R E EL G
Sbjct: 276 GGPRAAKLDAQQGTIDKDADYQCFL-------ERLSKADDQVQRSEGELLASLLDSKGKE 328
Query: 155 KETLV------VTPLMEYVRQKRAAESGA 177
KET VTPL+ ++R+++ A+S A
Sbjct: 329 KETEARRLAGKVTPLLLHLREQKMAQSDA 357
>gi|194222085|ref|XP_001499122.2| PREDICTED: regulator of nonsense transcripts 3A-like [Equus
caballus]
Length = 432
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
P+ + VVIR LPPSL++ L H +++F F S F YSRAY+
Sbjct: 20 PICKGSVVIRRLPPSLTKEQLEEQL--HPLPAHDYFEFFTADLSLF----PHLYSRAYIN 73
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDY 122
+ P + F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I D +Y
Sbjct: 74 FRNPEDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDAEY 133
Query: 123 LEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+FL+ E ++ L ++ +E + TPL+EY++ ++
Sbjct: 134 KKFLEAYCVEEEKAAASPETL---LGDIEAKTRELIARRTTPLLEYIKNRK 181
>gi|393244442|gb|EJD51954.1| hypothetical protein AURDEDRAFT_181525 [Auricularia delicata
TFB-10046 SS5]
Length = 392
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
+ R KVV+R LPP+L ++ + ND W F GK S + K SRAY+
Sbjct: 10 VDRLKVVVRRLPPNLPEDVFWDSVKPWANDDTVQWRSFVAGKISK-RTIKENVPSRAYIT 68
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
K V F+ +GH+F ++ G + A+VE+AP Q++P + D + T+ +D Y
Sbjct: 69 FKTHESVAIFSREYDGHIFRDKSGRETAAVVEFAPYQKIPPTEVKPDKYKDTLLRDAHYT 128
Query: 124 EFL 126
+L
Sbjct: 129 HWL 131
>gi|355754831|gb|EHH58732.1| Nonsense mRNA reducing factor 3A, partial [Macaca fascicularis]
Length = 408
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 1 QVVIRRLPPGLTKEQLEQQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNPD 54
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 127
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 55 DILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLE 114
Query: 128 VIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
E + L E+ +E + TPL+EY++ ++
Sbjct: 115 TYCVEEEKTSTNPETL---LGEMEAKTRELIARRTTPLLEYIKNRK 157
>gi|58865890|ref|NP_001012159.1| regulator of nonsense transcripts 3A [Rattus norvegicus]
gi|56971889|gb|AAH88463.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Rattus
norvegicus]
gi|149057670|gb|EDM08913.1| rCG43312 [Rattus norvegicus]
Length = 405
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHL-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFL 179
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E S E L E+ +E L TPL+EY++ ++
Sbjct: 180 ESYSLEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|156375215|ref|XP_001629977.1| predicted protein [Nematostella vectensis]
gi|156216989|gb|EDO37914.1| predicted protein [Nematostella vectensis]
Length = 105
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 10/110 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
KVVIR LPPSL + +L +++ D +++F F G+ SF +SRAY+ K
Sbjct: 1 KVVIRRLPPSLKEEEL----KEYLGDLPEHDFFYFVDGQMSF----GPVLFSRAYINFKN 52
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
+ +F + +G F + KG ++ A+VEYAP Q VP+ +RKD++ GTI
Sbjct: 53 QEDIIKFRDQFDGSSFFDNKGKKYPAVVEYAPYQGVPRKKNRKDAKCGTI 102
>gi|21313164|ref|NP_080200.1| UPF3 regulator of nonsense transcripts homolog A [Mus musculus]
gi|74211416|dbj|BAE26455.1| unnamed protein product [Mus musculus]
gi|109733918|gb|AAI16989.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|111600742|gb|AAI19036.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Mus
musculus]
gi|148690220|gb|EDL22167.1| mCG3697, isoform CRA_c [Mus musculus]
Length = 422
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHV-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFL 179
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E S E L E+ +E L TPL+EY++ ++
Sbjct: 180 ESYSLEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|296215016|ref|XP_002753967.1| PREDICTED: regulator of nonsense transcripts 3A-like [Callithrix
jacchus]
Length = 497
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 95 QVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSL---YPHL-YSRAYINFRNPD 148
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLK 127
+ F + +G+VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 149 DILLFRDRFDGYVFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFLE 208
Query: 128 VIAKPAENLPS-AEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
E + EI L EA+ A + L+EY++ ++
Sbjct: 209 TYCVEEEKTSTNPEILLGEMEAKTKRA--HARRINTLLEYIKNRK 251
>gi|395754367|ref|XP_003780778.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B [Pongo abelii]
Length = 357
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 93/169 (55%), Gaps = 20/169 (11%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
VVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 118 VVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFKNQ 169
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL
Sbjct: 170 EDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFL 229
Query: 127 KVIAKPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 171
+ A E + S E LE EA EL K+T TPL+ +++ K+
Sbjct: 230 ESYATDNEKMTSTPETLLEEIEAKNRELIA--KKT---TPLLSFLKNKQ 273
>gi|380478534|emb|CCF43542.1| nonsense-mediated mRNA decay protein [Colletotrichum higginsianum]
Length = 653
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 19/178 (10%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
P++ KV+IR LPP +++ +L D + N +W F GK S + K R R
Sbjct: 37 PVEGDKVIIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFAQGKISQDPA-KPSRPGRV 95
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREG 114
Y+ + K + + L+ + + K ++E+A +VP R D R+G
Sbjct: 96 YLHVLKRESLNTLSTLIQAKSWEDAKMTSNSPSLVGPPVLEFAIYNKVPGGKKRTDPRQG 155
Query: 115 TIFKDPDYLEFLKVIAKPA---ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
TI +DP+++ FL + P EN S E K+AE S P+ + TPL+EY+++
Sbjct: 156 TIDQDPEFMSFLLSLTNPEMDKENEGS-----ESKDAEES-KPEAKVTTTPLIEYIKE 207
>gi|432877265|ref|XP_004073128.1| PREDICTED: regulator of nonsense transcripts 3B-like [Oryzias
latipes]
Length = 457
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPP+L++ +L + ++ F +S Y H ++RAY+ +
Sbjct: 36 TKIVIRRLPPTLTKEELEEQLQPL--PEVDYLEFFSNDTSL---YPHL-FARAYINFRNE 89
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
V F + +G+VFV+ KG +F AIVE+AP Q+ K +K + GTI +DPDY FL
Sbjct: 90 EDVVLFRDRFDGYVFVDGKGQEFPAIVEFAPFQKTAKKRIKKKDSKCGTIAEDPDYKRFL 149
Query: 127 KVIAKPAENLPSA-EIQLERKEA---ELSGAPKETLVVTPLMEYVRQKR 171
+ L + E LE EA ELS TPL+++++ K+
Sbjct: 150 EYYNGDDNKLTTTPETLLEEVEARSKELSAK-----KTTPLLDFLKTKQ 193
>gi|19114617|ref|NP_593705.1| hypothetical protein SPAC13G7.03 [Schizosaccharomyces pombe 972h-]
gi|1723449|sp|Q10267.1|UPF3_SCHPO RecName: Full=Nonsense-mediated mRNA decay protein 3; AltName:
Full=Up-frameshift suppressor 3
gi|1204170|emb|CAA93591.1| up-frameshift suppressor 3 family protein (predicted)
[Schizosaccharomyces pombe]
Length = 278
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
KV++ +LPP+L + L + F W F GK++ + + S AY++ +
Sbjct: 13 KVLVFNLPPTLPEQVFLQSI-NSFLPHVEWHRFSKGKATV--GTRSELLSFAYLKFQSAT 69
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKV 128
V EF + GH F+++K ++AIV AP Q++P + DS EG++ +DP + EF KV
Sbjct: 70 AVQEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF-KV 128
Query: 129 IAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAA 173
+ S + +E+ + TPL++Y+ +K+ A
Sbjct: 129 QRESYSQTASNDDVIEKLQTS-----------TPLLQYLAEKKNA 162
>gi|392590363|gb|EIW79692.1| hypothetical protein CONPUDRAFT_144892 [Coniophora puteana
RWD-64-598 SS2]
Length = 553
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+R K V+R LP +L ++ + + W F GK K SRAY+
Sbjct: 47 ERMKAVVRRLPANLPEDIFWQSVQAWVTPETVAWRKFYAGKI-HKRPNKESMPSRAYIAF 105
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
K V F+ +GHVF ++ G + +A+VE+AP Q+VP + D R GTI KD D++
Sbjct: 106 KSDDLVATFSREYDGHVFRDKAGNESQAVVEFAPFQKVPAEKKKADPRAGTIEKDEDFIS 165
Query: 125 FLKVI 129
FLK +
Sbjct: 166 FLKTL 170
>gi|226469914|emb|CAX70238.1| putative hUPF3A [Schistosoma japonicum]
gi|226488835|emb|CAX74767.1| putative hUPF3A [Schistosoma japonicum]
Length = 536
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 36/185 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
K+V+R LPP L ND + + + Y FC S +RAY+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFCDADD------SLGALGLTRAYIAFSDID 61
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDP 120
+F+F E +G++F++ +G + A+VE+A Q +VP +++ D ++G++ D
Sbjct: 62 SLFDFKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDS 121
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLME 165
+Y+EF+K ++ SAE+ E E+E + E++ +VTPL+
Sbjct: 122 EYIEFVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLT 174
Query: 166 YVRQK 170
Y+ +
Sbjct: 175 YLNNR 179
>gi|453081511|gb|EMF09560.1| Smg4_UPF3-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 582
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+ +R LPP L+ + + D + N + +W +R GK K SRAYV
Sbjct: 35 RLKLEVRRLPPGLTLEEFEGILGDEWKLGNGKVDWLEYRQGKVKLSLG-KVPEQSRAYVH 93
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVP-KPFSRKDSREGT 115
L A + F F ++ G + +AP+QR R D+R+GT
Sbjct: 94 LVDEAAISAFEARFLAVTFQDKAGTYRNPDMKHLPPTLGFAPNQRTTINTKLRSDNRQGT 153
Query: 116 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV--TPLMEYVRQKRAA 173
I +DP+++ FL+ +P SA I ++E E +V+ TPL+E +R+K+A+
Sbjct: 154 IDQDPEFIAFLEAETQPIAR--SAAIDSVSVDSETP----EKVVIKSTPLIEALREKKAS 207
Query: 174 ESGAQES 180
++ A ES
Sbjct: 208 KAKAVES 214
>gi|255570970|ref|XP_002526436.1| phosphoribosylamine--glycine ligase [Ricinus communis]
gi|223534216|gb|EEF35931.1| phosphoribosylamine--glycine ligase [Ricinus communis]
Length = 292
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 291 LDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQKMQNLN 350
+ KQ S KN S T+ KQ Q+ EA GR+IR ILLN ++RQ QS + VQ +Q++Q+ N
Sbjct: 114 MSKQNAPSFDKNVTSSTI-KQRQQHEASGRIIRNILLNKDSRQNQS-SRVQSEQQIQSSN 171
Query: 351 QENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTR 410
E K L P P G + D SSDD+F LHG EKQEK TR
Sbjct: 172 LEKEKRLQRP---PRGQLVLKD---------VNGSSDDKFVGNDLHGFSG--EKQEKLTR 217
Query: 411 NKD 413
NKD
Sbjct: 218 NKD 220
>gi|310800307|gb|EFQ35200.1| smg-4/UPF3 family protein [Glomerella graminicola M1.001]
Length = 647
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
P++ KVVIR LPP +++ +L D + N +W F GK S + K R R
Sbjct: 37 PVEGDKVVIRRLPPGMTEQELWNNLGDEWKAGNGLVSWHNFVQGKISQDPA-KPSRPGRV 95
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREG 114
Y+ + K + + L+ + + K A ++E+A ++P R D R+G
Sbjct: 96 YLHVLKRESLNVLSNLIQAKSWEDAKMTSNSASLVGPPVLEFAIYNKIPSGKKRSDPRQG 155
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAE----LSGAPKETLVVTPLMEYVRQ 169
TI +DP+++ FL + P E++ E + +E P+ + TPL+E++++
Sbjct: 156 TIDQDPEFMAFLLSLTNP-------EMERENENSEGKDTEDSKPEAKVTTTPLIEFIKE 207
>gi|301616932|ref|XP_002937909.1| PREDICTED: regulator of nonsense transcripts 3A-like [Xenopus
(Silurana) tropicalis]
Length = 464
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP+L++ L H +++F F S F +SRAY+ + P
Sbjct: 49 SKVVIRRLPPNLNKEQLEEQL--HPLPAHDYFEFCTADPSLF----PHLFSRAYINFRNP 102
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I +D +Y +FL
Sbjct: 103 EDILLFRDRFDGYIFIDNKGQEYPAVVEFAPFQKISKKKLKKKDAKAGSIAEDLEYKKFL 162
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ E + + E L E+ KE + TPL+E+++ ++
Sbjct: 163 ENYCAEEEKVYANPETLL----GEIEAKTKELIARRTTPLLEFIKNRK 206
>gi|134055711|emb|CAK44084.1| unnamed protein product [Aspergillus niger]
Length = 565
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 33/175 (18%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K+++R LPP L+Q + + + +WF ++PGK S
Sbjct: 39 RLKLLVRRLPPGLTQAEFETALGSEWKVGGGKVDWFQYKPGKVS---------------- 82
Query: 64 LKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSREGTIF 117
K + + F++ + ++ E+AP ++ SRKD+R+GTI
Sbjct: 83 --KDDHTIPLSNKVRQTSFLDARNTSTDPVLLGPPSLEFAPYAKIAGNRSRKDARQGTID 140
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+DP+++ FL+ + +P E + ++ KET+ VTPL++Y+R+K+A
Sbjct: 141 QDPEFIAFLESLTQPLAKPAPVESGADGEDK------KETVTVTPLVQYIREKKA 189
>gi|351705030|gb|EHB07949.1| Regulator of nonsense transcripts 3B [Heterocephalus glaber]
Length = 242
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 11/134 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LP +L++ L ++H +++F F P +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPSTLTREQL----QEHLQPMPEHDYFEFFPNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLE 124
+ F + +G+VF++ KG ++ A+VE+AP Q+ K ++K + GTI DP+Y +
Sbjct: 103 NQEDIILFRDRFDGYVFLDNKGQEYAAMVEFAPFQKAAKKKTKKRDTKVGTIGDDPEYRK 162
Query: 125 FLKVIAKPAENLPS 138
FL+ A E + S
Sbjct: 163 FLESYATDKEKMTS 176
>gi|403418915|emb|CCM05615.1| predicted protein [Fibroporia radiculosa]
Length = 499
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSFFYSYKHQRYSRA 60
K+ +R K V+R LPP+L ++ + + W + GK + K SRA
Sbjct: 34 KQQTERLKTVVRRLPPNLPEDIFWQSVQQWVTAETATWKSYHQGKFRKRLN-KENIPSRA 92
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K + F+ +GH+F ++ G + A+VE+AP Q+VP + D R GTI KD
Sbjct: 93 YIVFKDEELLANFSREYDGHLFRDKAGNESVAVVEFAPFQKVPSEKKKADGRMGTIEKDE 152
Query: 121 DYLEFLKVI 129
DY+ FL +
Sbjct: 153 DYVSFLASL 161
>gi|426194127|gb|EKV44059.1| hypothetical protein AGABI2DRAFT_187731 [Agaricus bisporus var.
bisporus H97]
Length = 479
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 25/190 (13%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
P +R K+V+R LPP+L ++ + +D W + PGK + K SRAY+
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVSNWVTDDTVMWKLYFPGKPKKRMN-KENIPSRAYI 90
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK---- 118
K + F+ +GH FV++ G + A+VE+AP Q+VP + DSR TI K
Sbjct: 91 AFKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATIEKGQAL 150
Query: 119 --------------DPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLM 164
D DY+ F++ + N+ S + + S P TPL+
Sbjct: 151 RVRYAMFSISNAHLDEDYISFVESL-----NVQSNAEPVTIETLVASTRPASPPKTTPLL 205
Query: 165 EYVRQKRAAE 174
E ++ +R A+
Sbjct: 206 EALKAERQAQ 215
>gi|380791687|gb|AFE67719.1| regulator of nonsense transcripts 3A isoform hUpf3p, partial
[Macaca mulatta]
Length = 266
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 122 DDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKKFL 181
Query: 127 KVIA----KPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ K + N + ++E K EL TPL+EY++ ++
Sbjct: 182 ETYCVEEEKTSANPETLLGEMEAKTRELIAR-----RTTPLLEYIKNRK 225
>gi|296411781|ref|XP_002835608.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629394|emb|CAZ79765.1| unnamed protein product [Tuber melanosporum]
Length = 615
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
R KVV+RHLP + +++ ++ N+ W + GK + K + SR ++ K
Sbjct: 33 RLKVVVRHLPSLIKEDEFKGAMAEYINEETVEWASWVQGKIPEERT-KAPKDSRCVIKFK 91
Query: 66 KPAGVFEFAELLNGH-VFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLE 124
P + +E L H F + KG +EY+P Q+ PK R D+R GTI DPD++
Sbjct: 92 NPLQITALSEGLRLHGPFTDSKGNTTNPQMEYSPFQKAPKRSVRIDARAGTIESDPDFIA 151
Query: 125 FL 126
F+
Sbjct: 152 FV 153
>gi|240248225|emb|CAX18772.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Danio
rerio]
Length = 155
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 10/95 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPPSLS++ L ++H + +++F F P S Y H +SRAY+ K
Sbjct: 43 SKVVIRRLPPSLSKDQL----QEHLSPLPSFDYFEFFPADQSL---YPH-LFSRAYINFK 94
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ 100
P + F + +G+VF++ KG ++ A+VE+AP Q
Sbjct: 95 NPEDIIIFRDRFDGYVFIDNKGQEYPAVVEFAPFQ 129
>gi|396462222|ref|XP_003835722.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
gi|312212274|emb|CBX92357.1| hypothetical protein LEMA_P050630.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++ R LPP L++ + A+ + + +W +R GK S + K R SRAY+
Sbjct: 34 RLKLICRRLPPGLTKAEFEAVLGAEWKVGAGKIDWLNYRKGKIST-DAAKPSRPSRAYIH 92
Query: 64 LKKPAGVFEFAELLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSREGTIF 117
+ K + +L+ F + K Q A+V EYAP ++P R D+R+GTI
Sbjct: 93 VTKQEHIRVLGDLVLASTFHDATKSWQDPALVGPPTLEYAPYPKMPGGRRRNDNRQGTID 152
Query: 118 KDPDYLEFLKVIAKPAEN--LPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
+D ++ +FL+ + P P ++Q +R + TPL+E +R+K+A
Sbjct: 153 QDQEFKDFLESLTNPITKPIAPENDVQKDR------------VKTTPLIEALREKKA 197
>gi|335310531|ref|XP_003362076.1| PREDICTED: regulator of nonsense transcripts 3A-like, partial [Sus
scrofa]
Length = 447
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 18/170 (10%)
Query: 8 TKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+KVV+R LPPSL++ L L H D + +F ++ Y H YSRAY+
Sbjct: 116 SKVVVRRLPPSLTREQLEEQLQPLPAH--DYFEFF------TADLSLYPH-LYSRAYINF 166
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYL 123
+ P + F + +G++F++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y
Sbjct: 167 RNPDDILLFRDRFDGYIFIDSKGLEYPAVVEFAPFQKIAKKKLKKKDTKTGSIEDDPEYK 226
Query: 124 EFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+FL+ E A E ++ +E + TPL+EY++ ++
Sbjct: 227 KFLETYCVEEEK---ASANPETLLGDVEAKTRELIARRTTPLLEYIKNRK 273
>gi|327268038|ref|XP_003218805.1| PREDICTED: regulator of nonsense transcripts 3A-like [Anolis
carolinensis]
Length = 476
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 12/164 (7%)
Query: 11 VIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGV 70
+IR LPPS ++ L H +++F F S Y H YSRAY+ + P +
Sbjct: 57 LIRRLPPSFTKEQLEEQL--HPLPAHDYFEFCTSDPSL---YPHL-YSRAYINFRNPDDI 110
Query: 71 FEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVI 129
F + +G VF++ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL+
Sbjct: 111 LLFRDRFDGFVFIDSKGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESY 170
Query: 130 AKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
E + + L E+ +E + TPL+EY++ ++
Sbjct: 171 CAEEEKISANPETLL---GEIEAKTRELIARRTTPLLEYIKNRK 211
>gi|346976552|gb|EGY20004.1| hypothetical protein VDAG_02020 [Verticillium dahliae VdLs.17]
Length = 673
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 13/177 (7%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P++ KV+IR LPP +++ ++ + D + N +W F GK S + K R
Sbjct: 35 KTPVEGDKVIIRRLPPGMTEEEVWTILGDKWKAGNGLVDWSDFARGKVSQDPA-KSSRPG 93
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
R Y+ +KK + E E++ + + K + EY +++P R D+R
Sbjct: 94 RLYLHVKKRESLAELDEIVQTRTWEDTKLTHNNPCLVGPPSLEYCIYKKIPGARKRSDAR 153
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQ 169
+GTI +DP+++ +L + P E + + P + TPL+EY+++
Sbjct: 154 QGTIDQDPEFMSYLLSLTNPET---EKEGETGEDPSAGESKPDTKVTTTPLIEYIKE 207
>gi|410056912|ref|XP_003954560.1| PREDICTED: LOW QUALITY PROTEIN: regulator of nonsense transcripts
3B, partial [Pan troglodytes]
Length = 397
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 18/166 (10%)
Query: 12 IRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAG 69
IR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 8 IRRLPPTLTKEPL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFKNQED 59
Query: 70 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKV 128
+ F + +G+VF++ KG ++ AIVE+AP Q+ K ++K + GTI DP+Y +FL+
Sbjct: 60 IILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLES 119
Query: 129 IAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
A E + S E LE E+ +E + TPL+ +++ K+
Sbjct: 120 YATDNEKMTSTPETLLE----EIEAKNRELIAKKTTPLLSFLKNKQ 161
>gi|195431539|ref|XP_002063794.1| GK15858 [Drosophila willistoni]
gi|194159879|gb|EDW74780.1| GK15858 [Drosophila willistoni]
Length = 461
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 28/173 (16%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFN-----DRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+V+RHLPP++++ + L DH + D Y ++C P ++ + RAY+ +
Sbjct: 15 IVVRHLPPTMTEKEFL----DHVDPLPEIDSY-YYC--PAD----WTLGQEASCRAYINM 63
Query: 65 --KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDPD 121
K V +F + +G+VF++ KG ++ AIVEYAP Q K +R D++ TI +P
Sbjct: 64 STKNIEEVLQFRDRFDGYVFLDAKGDEYVAIVEYAPFQCFAKNKARSHDNKVDTIESEPH 123
Query: 122 YLEFLKVIAKPAEN---LPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKR 171
+ EF++ + E L +I + + + + + TPL++Y+ K+
Sbjct: 124 FQEFVQKFIEDKEEASRLGDVKIDIAYDDTD------DEVQSTPLLQYLANKK 170
>gi|323507764|emb|CBQ67635.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 519
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 55/192 (28%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW------------FCFRPGKSS------- 47
++KVVIR LPP+L + D+ + PG++S
Sbjct: 120 KSKVVIRRLPPNLPEEVFWKAVSPWIRDKADCQALAAASAAESAPESTPGEASTSSPSNA 179
Query: 48 -------FFYSYKH-------------QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87
YKH +++RAYV P + F + +GH+F + KG
Sbjct: 180 SPSDAAAATVDYKHFVAGKLKTDTNKQNKHARAYVRFLDPQSLVHFHKAFDGHIFRDSKG 239
Query: 88 AQFKAIVEYAPSQRVPKPFS---------RKDSREGTIFKDPDYLEFLKVIAKPAENLPS 138
+ AIVE+AP Q+V P S + D ++GTI KD DYL F+ E L
Sbjct: 240 KESIAIVEFAPYQKVVLPPSAAAQRGRRAKPDPKQGTIDKDADYLSFV-------ERLNQ 292
Query: 139 AEIQLERKEAEL 150
A ++R E EL
Sbjct: 293 AGDDVKRSEGEL 304
>gi|409078127|gb|EKM78491.1| hypothetical protein AGABI1DRAFT_129598 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 497
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 33/203 (16%)
Query: 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF-NDRYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
P +R K+V+R LPP+L ++ + +D W + PGK + K SRAY+
Sbjct: 32 PGERLKIVVRRLPPNLPEDIFWQSVSNWVTDDTVMWKLYFPGKPKKRMN-KENIPSRAYI 90
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFK---- 118
K + F+ +GH FV++ G + A+VE+AP Q+VP + DSR TI K
Sbjct: 91 AFKDSEHLLFFSREYDGHKFVDKAGNESYAVVEFAPYQKVPGEKKKPDSRNATIEKGQAL 150
Query: 119 --------------DPDYLEFLKVI-----AKPAE--------NLPSAEIQLERKEAELS 151
D DY+ F++ + A+P +L ++ I L S
Sbjct: 151 RVRYAMFSISNAHLDEDYISFVESLNVQSNAEPVTIETLGAVLSLKASLIYLLTYPPVAS 210
Query: 152 GAPKETLVVTPLMEYVRQKRAAE 174
P TPL+E ++ +R A+
Sbjct: 211 TRPASPPKTTPLLEALKAERQAQ 233
>gi|328855091|gb|EGG04220.1| hypothetical protein MELLADRAFT_78386 [Melampsora larici-populina
98AG31]
Length = 460
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 6 QRTKVVIRHLPPSLSQNDL---LALFRDHFNDRYNWFCFRPGKSSFFYSYKHQR-----Y 57
+R KVVIRHLPP+L + L+ + D N+ C KS + +
Sbjct: 3 ERNKVVIRHLPPALPEEVFWKTLSPWIDPINESTPAKCLVTYKSFIPGKLRQNKGKIDLP 62
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
SRAY+ + EF F + +G +E+AP Q++P + D R GTI
Sbjct: 63 SRAYLYFSSVEDLVEFHHGYAQQAFRDSRGNITVPKIEFAPFQKIPTQVKKLDPRCGTID 122
Query: 118 KDPDYLEFLKVIAKPAENLPSAEIQLERKEAELS--GAPKETLVVTPLMEYVRQKRAAES 175
DY FLK + P E + + ++ L+ E +TPL++++R R +
Sbjct: 123 SSQDYQLFLKKLESPLNQ----ETEDDSNQSNLTEDSTKLEIPKITPLIQHLRSLRKS-- 176
Query: 176 GAQESLAVGRVGRR-SRAASASKTSS 200
AQE+ ++ +R + SASK SS
Sbjct: 177 -AQEATTAQKLQQRNTTTTSASKVSS 201
>gi|407926218|gb|EKG19187.1| Regulator of nonsense-mediated decay UPF3 [Macrophomina phaseolina
MS6]
Length = 435
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 49 FYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRV 102
F K R SRAY+ L + A V A+ + F + K + V++AP R+
Sbjct: 3 FSLAKPSRPSRAYLHLTEQAHVVPLADKVRKTAFTDAKNSTRDPALIGPPTVDFAPFNRI 62
Query: 103 PKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTP 162
P R D+R+G I +DP++ +FL+ + P SA + E + K+ + TP
Sbjct: 63 PGGRRRNDARQGLIDQDPEFKDFLESLTNPVPK--SAPVDNAADEVAVK---KDEVRTTP 117
Query: 163 LMEYVRQKRAAESGAQESLAVGRVGR 188
L+E++R+K+AA+ Q + A G+ GR
Sbjct: 118 LIEHLREKKAAKEKPQPAKAQGKHGR 143
>gi|148697044|gb|EDL28991.1| UPF3 regulator of nonsense transcripts homolog B (yeast), isoform
CRA_b [Mus musculus]
Length = 386
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 50 YSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSR 108
YS Y+RAY+ K + F + +G+VF++ KG ++ AIVE+AP Q K +
Sbjct: 1 YSLYPHMYARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKK 60
Query: 109 KDSREGTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLME 165
+D++ GTI DP+Y +FL+ A E + S E LE E+ +E + TPL+
Sbjct: 61 RDTKVGTIEDDPEYRKFLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLS 116
Query: 166 YVRQK 170
+++ K
Sbjct: 117 FLKNK 121
>gi|12854641|dbj|BAB30093.1| unnamed protein product [Mus musculus]
Length = 248
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHV-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFL 179
Query: 127 KVIAKPAENL-PSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQKR 171
+ + E S E L E+ +E L TPL+EY++ ++
Sbjct: 180 ESYSLEEEKTSASPETLL----GEIEAKTRELLARRTTPLLEYIKNRK 223
>gi|429862350|gb|ELA37002.1| nonsense-mediated mrna decay protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 627
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVVIR LPP L++ +L D + +W F GK S + K R +R Y+ +
Sbjct: 42 KVVIRRLPPGLTEQELWNKLGDEWKAGQGLVSWHNFEAGKISQ-DAAKPSRPARVYLNVL 100
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKA------IVEYAPSQRVPKPFSRKDSREGTIFKD 119
K + + L+ + + K ++E A ++P R D R+GTI +D
Sbjct: 101 KREDLNTLSNLIQARSWEDAKMTSNSPSLVGPPVLEMASYNKIPSGKKRTDPRQGTIDQD 160
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYV 167
P+++ FL+ + P +N + E K+A P + TPL+E++
Sbjct: 161 PEFMAFLQDLTNPEQNKETE--GSESKDAADESKPDAKVTTTPLIEFL 206
>gi|330931624|ref|XP_003303476.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
gi|311320521|gb|EFQ88437.1| hypothetical protein PTT_15697 [Pyrenophora teres f. teres 0-1]
Length = 623
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++ R LPP L++ + + D + + +W +R GK S + K + +RAY+
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKIST-DAAKPSKPARAYIH 92
Query: 64 LKKPAGVFEFAELLNGHVFV-----NEKGAQFKAIV-----EYAPSQRVPKPFSRKDSRE 113
+ K E ++L HV K Q +V EY+P ++P R D+R+
Sbjct: 93 VTK----QEHVKVLGDHVRTVTFHDATKSWQDPVLVGPPTLEYSPYPKMPGGRRRNDNRQ 148
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
GTI +D ++ +FL+ + P +AE + + KE + TPL+E +R+K+A
Sbjct: 149 GTIDQDQEFKDFLESLTNPITKPAAAENEGQ----------KEKVKTTPLIEALREKKA 197
>gi|28436870|gb|AAH47049.1| Upf3b protein, partial [Mus musculus]
Length = 388
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 52 YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-RVPKPFSRKD 110
Y H Y+RAY+ K + F + +G+VF++ KG ++ AIVE+AP Q K ++D
Sbjct: 6 YPHM-YARAYINFKNQEDILLFRDRFDGYVFLDNKGQEYHAIVEFAPFQKAAKKKIKKRD 64
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYV 167
++ GTI DP+Y +FL+ A E + S E LE E+ +E + TPL+ ++
Sbjct: 65 TKVGTIEDDPEYRKFLESYATDNEKMTSTPETLLE----EIEAKNRELIAKRTTPLLSFL 120
Query: 168 RQKR 171
+ K+
Sbjct: 121 KNKQ 124
>gi|76157550|gb|AAX28438.2| SJCHGC04530 protein [Schistosoma japonicum]
Length = 230
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 36/185 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
K+V+R LPP L ND + + + Y FC S +RAY+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFCDADD------SLGALGLTRAYIAFSDID 61
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDP 120
+F+F E +G++F++ +G + A+VE+A Q +VP +++ D ++G++ D
Sbjct: 62 SLFDFKERFDGYIFLDCEGNESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDS 121
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLME 165
+Y+EF+K ++ SAE+ E E+E + E++ +VTPL+
Sbjct: 122 EYIEFVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLT 174
Query: 166 YVRQK 170
Y+ +
Sbjct: 175 YLNNR 179
>gi|393219819|gb|EJD05305.1| hypothetical protein FOMMEDRAFT_165771 [Fomitiporia mediterranea
MF3/22]
Length = 522
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDR-YNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
+ R K V+R LPP+L ++ + D +W F GK Y+ K SRAY+
Sbjct: 35 VDRLKAVVRRLPPNLPEDVFWQSVQPWVTDESVSWRTFYSGKVRKKYN-KENTPSRAYIA 93
Query: 64 LKKPAGVFEFAELLNGHVFVNE----------------KGAQFKAIVEYAPSQRVPKPFS 107
K + F++ +GH+F ++ KG + AIVE+APSQ+VP
Sbjct: 94 FKTAEQLATFSQAYDGHIFRDKSGMTPNLSYHYSYRQVKGNESVAIVEFAPSQKVPSEKR 153
Query: 108 RKDSREGTIFK--------------------DPDYLEFLKVIAKPAENLPSAEIQLERKE 147
+ D R GTI + D D++ F + PA S + + E
Sbjct: 154 KLDPRMGTIDQGNSRPLNTSLIYTQNDIWSIDEDFISFFTALNTPA----SKTTETDAIE 209
Query: 148 AELSGA-PKETLVVTPLMEYVRQKRAAE 174
A ++ + P TPL++ +R ++ A+
Sbjct: 210 ALVAASQPPPQPKSTPLLDALRAEKQAQ 237
>gi|452838806|gb|EME40746.1| hypothetical protein DOTSEDRAFT_74324 [Dothistroma septosporum
NZE10]
Length = 547
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 24/269 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+ IR LPP L+ + D + N + +W ++ GK K S
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYKQGKVKLGMG-KMPEQS 88
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQ-------FKAIVEYAPSQRVPKPF-SRKD 110
R Y+ + + V E + G F ++ G + +E+A +QR P +R D
Sbjct: 89 RCYLRVANESMVKELEQRFLGVTFADKAGTHKNPDLRHLQPALEFAMNQRTPLATKARVD 148
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSAE-IQLERKEAELSGAPKETLVVTPLMEYVRQ 169
SR+GTI +DP+++ FL +P S + + E+KE E K + TPL+E +R
Sbjct: 149 SRQGTIDQDPEFMAFLMGETEPIVKAASLDAVGAEKKEGE-----KNEVKTTPLIEALRD 203
Query: 170 KRAAESGAQESL------AVGRVGRRSRAASASKTSSTTTKRGSEKKKYILKDSAKNARR 223
K+A+++ A ES A G S+ A+ +K+ + K +K + + K++ K R
Sbjct: 204 KKASKAKAAESKAAEKKDAKGHTRTDSKDAAPAKSDAKDNKIPRQKVEQVSKEAVKALNR 263
Query: 224 KDKSTFTVVAKREDQPASSSGKETSASET 252
+ +R P + K +S ++T
Sbjct: 264 QVADMQQQAQQRPTSPLPPTAKSSSPAKT 292
>gi|336385749|gb|EGO26896.1| hypothetical protein SERLADRAFT_436716 [Serpula lacrymans var.
lacrymans S7.9]
Length = 493
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+R K VIR LPP+L ++ + D W F PGK + K SRAY+
Sbjct: 30 ERLKTVIRRLPPNLPEDVFWQSVQSWVTDDTTLWKMFYPGKVGKRIN-KENIPSRAYIAF 88
Query: 65 KKPAGVFEFAELLNGHVFVNEKGA-----------------QFKAIVEYAPSQRVPKPFS 107
+ + F+ +GH+F ++ G + +A+VE+AP Q++P
Sbjct: 89 RNEEQLAIFSREYDGHLFRDKAGLSRQLSLHSVIEMYLPGNESQAVVEFAPYQKIPTEKK 148
Query: 108 RKDSREGTIFKDPDYLEFLKVI 129
+ D+R TI KD DYL F++ +
Sbjct: 149 KADARNATIEKDEDYLSFVESL 170
>gi|119629654|gb|EAX09249.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
gi|119629655|gb|EAX09250.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_c [Homo sapiens]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F++ KG ++ A+VE+AP Q++ K RK + G+I DP+Y +FL
Sbjct: 122 DDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFL 181
Query: 127 KVIA 130
+
Sbjct: 182 ETYC 185
>gi|189188818|ref|XP_001930748.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972354|gb|EDU39853.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 619
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 28/179 (15%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVE 63
R K++ R LPP L++ + + D + + +W +R GK S + K + +RAY+
Sbjct: 34 RLKLICRRLPPGLTKAEFIEALGDEWKLGAGKIDWINYRKGKIST-DAAKPSKPARAYIH 92
Query: 64 LKKPAGVFEFAELLNGHVFV-----NEKGAQFKAIV-----EYAPSQRVPKPFSRKDSRE 113
+ K + ++L HV K Q +V EYAP ++P R D+R+
Sbjct: 93 VTK----QDHVKVLGDHVRTITFHDATKSWQDPVLVGPPTLEYAPYPKMPGGRRRNDNRQ 148
Query: 114 GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
GTI +D ++ +FL+ + P + + A + KE + TPL+E +R+K+A
Sbjct: 149 GTIDQDQEFKDFLESLTNP----------ITKPAAPENEGQKEKVKTTPLIEALREKKA 197
>gi|440893685|gb|ELR46360.1| Regulator of nonsense transcripts 3A, partial [Bos grunniens mutus]
Length = 460
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 27/181 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
+VVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 1 QVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSL---YPHL-YSRAYINFRNPD 54
Query: 69 GVFEFAELLNGHVFVNE---------------KGAQFKAIVEYAPSQRVPKPFSRKDSRE 113
+ F + +G++F++ KG ++ A+VE+AP Q++ K +K +
Sbjct: 55 DILLFRDRFDGYIFIDSKEKPFQNGFCNLFPVKGLEYPAVVEFAPFQKIAKKKLKKKDAK 114
Query: 114 -GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
G+I DP+Y +FL+ E + E ++ +E + TPL+EY++ +
Sbjct: 115 TGSIEDDPEYKKFLETYCVEEEK---TSVSPETLLGDIEAKTRELIARRTTPLLEYIKNR 171
Query: 171 R 171
+
Sbjct: 172 K 172
>gi|390348040|ref|XP_791537.3| PREDICTED: regulator of nonsense transcripts 3B-like
[Strongylocentrotus purpuratus]
Length = 128
Score = 64.3 bits (155), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 19/116 (16%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQR------YSRAY 61
TKVVIR LPP+L++ + + D F D + +FY K R YSRAY
Sbjct: 16 TKVVIRCLPPALTEEEFREIV-DPFPD-----------NEYFYYVKADRSLGEHAYSRAY 63
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTI 116
+ K + F + +GH F N +G + A+VE+AP Q+VPK +K D+R TI
Sbjct: 64 INFMKEEDIIPFRDTWDGHEFDNGQGLVYPAVVEFAPYQKVPKVIGKKVDARTATI 119
>gi|226488837|emb|CAX74768.1| putative hUPF3A [Schistosoma japonicum]
Length = 533
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 39/185 (21%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
K+V+R LPP L ND + + + Y FC S +RAY+
Sbjct: 8 KIVVRRLPPKLKANDFIKIVNPLPSHTYFRFCDADD------SLGALGLTRAYIAFSDID 61
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ-----RVPKPFSRK---DSREGTIFKDP 120
+F+F E +G++F++ + A+VE+A Q +VP +++ D ++G++ D
Sbjct: 62 SLFDFKERFDGYIFLD---CESSALVEFALCQALASAKVPLNGNKRDKVDKKQGSLLGDS 118
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETL---------------VVTPLME 165
+Y+EF+K ++ SAE+ E E+E + E++ +VTPL+
Sbjct: 119 EYIEFVK-------SMESAELCGEVSESESKKSALESILDDLQTKESNVVQTQIVTPLLT 171
Query: 166 YVRQK 170
Y+ +
Sbjct: 172 YLNNR 176
>gi|225706162|gb|ACO08927.1| Regulator of nonsense transcripts 3B [Osmerus mordax]
Length = 149
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TK+VIR LPPSL++ +L + ++ F +S Y H ++RAY+ K
Sbjct: 36 TKIVIRRLPPSLTKEELEEQLQPL--PEVDYLEFFSSDTSM---YPHL-FARAYINFKNQ 89
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRK-DSREGTI 116
+ F + +G+VF++ +G ++ AIVE+AP Q++ K S+K D++ GTI
Sbjct: 90 EDIVLFRDRFDGYVFIDNRGQEYPAIVEFAPFQKIAKKRSKKRDAKSGTI 139
>gi|171690100|ref|XP_001909982.1| hypothetical protein [Podospora anserina S mat+]
gi|170945005|emb|CAP71116.1| unnamed protein product [Podospora anserina S mat+]
Length = 689
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
KVVIR LPP L++ + A+ + + + + +W+ + PGK S S K +RAY+ +
Sbjct: 38 KVVIRRLPPGLTEAEFHAILGNEWKLGDGKVDWYKWYPGKVSQHPS-KPSTPARAYLHVS 96
Query: 66 KPAGVFEF------AELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKD 119
+ + E A+ + N+ VE++ +++P R D R+GTI +D
Sbjct: 97 QRDQLPELLRKVQEAKWEDAKETYNDPALVAPPTVEFSVYKKIPSEKKRVDGRQGTIDQD 156
Query: 120 PDYLEFLKVIAKPAEN 135
P+++ FL+ +A P N
Sbjct: 157 PEFMAFLESLASPDGN 172
>gi|452978770|gb|EME78533.1| hypothetical protein MYCFIDRAFT_190784 [Pseudocercospora fijiensis
CIRAD86]
Length = 512
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+ IR LPP L+ + + D + N R +W +R GK + K S
Sbjct: 30 KGPAPRLKLEIRRLPPGLTLTEFEEILGDEWKPGNGRVDWREYRQGKVKQ-SAAKVPEQS 88
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVPKPFS-RKD 110
R Y+ L + E F ++ G + YAP+QRVP R D
Sbjct: 89 RCYMHLLSEPILKELEVRFLEASFHDKAGTYRLPDLKHLPPTIGYAPNQRVPTTTKVRTD 148
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVR 168
+R+GTI +DP+++ FL+ +P P+A L+ E A KE + TPL+E +R
Sbjct: 149 NRQGTIDQDPEFMLFLQAETQPIFK-PAA---LDTLGVEAEKAEKEQIKSTPLIEALR 202
>gi|156099182|ref|XP_001615593.1| mRNA decay protein [Plasmodium vivax Sal-1]
gi|148804467|gb|EDL45866.1| mRNA decay protein, putative [Plasmodium vivax]
Length = 302
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 15/162 (9%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQ----RYSRA 60
+ K++IRHLPP+LS+++ F + D +++ + G K+Q +SR
Sbjct: 136 VHNKKIIIRHLPPTLSEDNFFESFPSNLKDELDYYYYVNGCVP-----KNQGGDITHSRM 190
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K EF + +G F + G +FKA+V +AP Q + ++ D T+ D
Sbjct: 191 YLSFKDDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDEMNNTLESDA 249
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTP 162
+L+ + + P E ++ + A+LS KE V+ P
Sbjct: 250 YFLKCCEEMNNPQE-----PVKKDDDNADLSNVIKEDGVILP 286
>gi|320593952|gb|EFX06355.1| nonsense-mediated mRNA decay protein [Grosmannia clavigera kw1407]
Length = 808
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 30/216 (13%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFND---RYNWFCFRPGKSSFFYSYKHQRYS 58
K ++ K VIR LPP L++++ + D + R W F GK S S K R +
Sbjct: 43 KTAVEGDKFVIRRLPPGLTEDEFFTILGDEWKQGRGRVGWLSFHAGKISKDPS-KPSRPA 101
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPFSRKDSR 112
A + + + + ++++ +V+ K + ++ E++ ++VP R DSR
Sbjct: 102 FAVLHVLRNEDLGLLSDVVRSASWVDAKESWTSPVLVGPPVAEFSLYKKVPSGKRRTDSR 161
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKE----------------AELSGAPKE 156
+GTI +D +++ FL+ +A P SA + E A +
Sbjct: 162 QGTIDQDAEFMAFLEALANPTSAKESAAAAANGTDGGQTATATNGAAGGALGEDDAAKTK 221
Query: 157 TLVV-TPLMEYVRQKRAAESGAQESLAVGRVGRRSR 191
T V TPL++++R+K+A +S + A G+ G++ R
Sbjct: 222 TKVTSTPLIDFLREKKANKS---KETANGKSGKQGR 254
>gi|326913847|ref|XP_003203244.1| PREDICTED: regulator of nonsense transcripts 3A-like [Meleagris
gallopavo]
Length = 413
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 10/139 (7%)
Query: 36 YNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
+++F F S Y H YSRAY+ + P + F + +G+VF++ KG ++ A+VE
Sbjct: 14 HDYFEFCTADPSL---YPHL-YSRAYINFRNPEDILLFRDRFDGYVFIDNKGLEYPAVVE 69
Query: 96 YAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAP 154
+AP Q++ K +K + G+I DP+Y +FL+ E + + L E+
Sbjct: 70 FAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLESYCADEEKICANPETL---LGEIEAKT 126
Query: 155 KETLV--VTPLMEYVRQKR 171
+E + TPL+EY++ ++
Sbjct: 127 RELIARRTTPLLEYIKNRK 145
>gi|82752819|ref|XP_727441.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483284|gb|EAA19006.1| Drosophila melanogaster SD10857p [Plasmodium yoelii yoelii]
Length = 317
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCF---RPGKSSFFYSYKHQRYSRAY 61
+++ K+VIR+LPP+L++N+ F ++ D +++ + GK+S +SR Y
Sbjct: 151 VKKKKIVIRNLPPTLNENNFFDSFSNNLKDELDYYYYVNGSIGKNSS----DDIIHSRIY 206
Query: 62 VELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPD 121
+ K EF + +G F + G ++KA V +AP+Q + +R D+R T+ DP
Sbjct: 207 LSFKDYMKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTLESDPY 265
Query: 122 YLEFLKVIAKPAE 134
+L+ + + P E
Sbjct: 266 FLKCCEEMHNPIE 278
>gi|449267882|gb|EMC78773.1| Regulator of nonsense transcripts 3B, partial [Columba livia]
Length = 387
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 52 YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS 111
Y H +SRAY+ K + F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K
Sbjct: 3 YPHM-FSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKD 61
Query: 112 RE-GTIFKDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYV 167
+ GTI DP+Y +FL+ + E L S E LE E+ KE + TPL+ ++
Sbjct: 62 AKTGTIEDDPEYKKFLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFL 117
Query: 168 RQK 170
+ K
Sbjct: 118 KNK 120
>gi|358057294|dbj|GAA96643.1| hypothetical protein E5Q_03314 [Mixia osmundae IAM 14324]
Length = 427
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 7 RTKVVIRHLPPSLSQN-------------------DLLALFRDHFNDRY---------NW 38
R K+V+RHLPP+L ++ D D + +W
Sbjct: 50 RQKIVVRHLPPNLPEHLFWKSVQQALPGVQLSASTDTAPTTHDAPEQVHEAQPSPSVIDW 109
Query: 39 FCFRPGKSSFFYSYKHQR--YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEY 96
+ PGK K Q SRAY+ + + F +GH+F + G +A VE+
Sbjct: 110 QAYYPGK---LRKSKGQEDVPSRAYLHFTELDTLVAFCSAYDGHMFRDSAGNVSRAQVEF 166
Query: 97 APSQRVPKPFS--RKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAP 154
AP Q++P P + + D ++ +I +D D+ F++ + P + A + A
Sbjct: 167 APYQKLPLPQTEAKADPKQNSILEDTDFTVFVETLRAPER---AETADGASAAAAAAAAS 223
Query: 155 KETLVVTPLMEYVRQKRAAESGAQE 179
K+ TPL+EY+R++RA + A+E
Sbjct: 224 KDAKKSTPLLEYLRKQRATDLAARE 248
>gi|256090058|ref|XP_002581038.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 280
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
KVV+R LPP L +D + + + Y FC G S +R Y+
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPLPSHTYFRFC---GADD---SLGGLGLTRVYITFNDMD 61
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP--------FSRKDSREGTIFKDP 120
+F+F E +G++F++ +G + A+VE+A Q + + D ++G++ KD
Sbjct: 62 SLFDFKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDS 121
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV---------------VTPLME 165
Y++FL SAE+ E E+E P E+++ VTPL+
Sbjct: 122 AYVKFLSS--------QSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLT 173
Query: 166 YVRQKRAAESGAQESLAVGRVGRRSRAASASKT 198
Y+ + E + R R+ A++ KT
Sbjct: 174 YLNNRGGDIRRKDEESSRHRQFRQGNASAIKKT 206
>gi|255078842|ref|XP_002503001.1| predicted protein [Micromonas sp. RCC299]
gi|226518267|gb|ACO64259.1| predicted protein [Micromonas sp. RCC299]
Length = 389
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 51/216 (23%)
Query: 6 QRTKVVIRHLPPSLSQNDLL-ALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
+RTK V R+LPP L ++ + AL + F RY + + G + + S A+++
Sbjct: 4 RRTKAVCRNLPPDLPESAFVRALAAEGFAGRYGYLDYARGA----WKQRLPVPSVAWIQF 59
Query: 65 KKPAGVFEFAELLNGHVF---------------------------VNEKGA--------- 88
+F+F G +F E+GA
Sbjct: 60 ADEQALFDFRGAFGGRIFRAGERDDAEERAGGESATENAEGDGEPAPEEGAPAATKNTAV 119
Query: 89 -----QFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI-----AKPAENLPS 138
+++A VEYAP+Q+ P+ +D REGTI KD YL+F+K + A PA + +
Sbjct: 120 PEGMEEWRARVEYAPNQKTPRGKQHRDKREGTIGKDAAYLQFVKDLEASMEAPPAPTMTA 179
Query: 139 AEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 174
+ R+ AE + K V+ L+ YV +++ E
Sbjct: 180 EQALERREAAERAATGKSDFKVSALLRYVMEQKKKE 215
>gi|449295821|gb|EMC91842.1| hypothetical protein BAUCODRAFT_78782 [Baudoinia compniacensis UAMH
10762]
Length = 482
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 24/180 (13%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRYS 58
K P R K+ IR LPP L+ ++ D + N + +W +R GK Q S
Sbjct: 28 KTPAARLKLEIRRLPPGLTLSEFEETLGDDWKLSNGKVDWREYRQGKIKAPGKVPEQ--S 85
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQ-------FKAIVEYAPSQRVP-KPFSRKD 110
R Y+ + V EF + +F ++ G + +AP+QR P + SR D
Sbjct: 86 RCYLHVVNDTLVREFEQRFLQVLFQDKAGTHRNPDLKFLPPTLGFAPNQRTPLQSKSRAD 145
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVV--TPLMEYVR 168
+R+GTI +DP+++ FL+ +P P A ++ GA KE + V TPL+E +R
Sbjct: 146 NRQGTIDQDPEFIAFLEAETQPLTK-PGA--------LDIVGAEKERVEVKTTPLIEDLR 196
>gi|355701126|gb|EHH29147.1| Nonsense mRNA reducing factor 3A, partial [Macaca mulatta]
Length = 373
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 7/126 (5%)
Query: 49 FYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSR 108
F Y H YSRAY+ + P + F + +G++F++ KG ++ A+VE+AP Q++ K +
Sbjct: 1 FSLYPHL-YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLK 59
Query: 109 KDSRE-GTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV--VTPLME 165
K + G+I DP+Y +FL+ E + L E+ +E + TPL+E
Sbjct: 60 KKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETL---LGEMEAKTRELIARRTTPLLE 116
Query: 166 YVRQKR 171
Y++ ++
Sbjct: 117 YIKNRK 122
>gi|403273083|ref|XP_003928355.1| PREDICTED: regulator of nonsense transcripts 3A [Saimiri
boliviensis boliviensis]
Length = 444
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 69/124 (55%), Gaps = 9/124 (7%)
Query: 52 YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS 111
Y H YSRAY+ + P + F + +G++F++ KG ++ A+VE+AP Q++ K +K
Sbjct: 75 YPHL-YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLKKKD 133
Query: 112 RE-GTIFKDPDYLEFLKVIAKPAENLPS-AEIQLERKEAELSGAPKETLV--VTPLMEYV 167
+ G+I DP+Y +FL+ E + E+ L E+ +E + TPL+EY+
Sbjct: 134 AKTGSIEDDPEYKKFLETYCVEEEKTSTNPEMLL----GEMEAKTRELIARRTTPLLEYI 189
Query: 168 RQKR 171
+ ++
Sbjct: 190 KNRK 193
>gi|358338395|dbj|GAA41070.2| regulator of nonsense transcripts 3, partial [Clonorchis sinensis]
Length = 509
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 15/140 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
TKVVIR LPP L+ + + Y FC P + + +RAY+
Sbjct: 14 TKVVIRRLPPKLTDAEFRQIVDPLPPHTYFRFC-SPDPT-----LGNLGTARAYITFCDI 67
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP--------KPFSRKDSREGTIFKD 119
+F+F E + +VFV+ +G + +VE+A Q + K + D ++GT+ +D
Sbjct: 68 DALFDFKERFDDYVFVDSEGNESYGLVEFAICQTLATTKETSTGKRSEKFDKKQGTLNED 127
Query: 120 PDYLEFLKVIAKPAENLPSA 139
PD+ +FLK I +P EN A
Sbjct: 128 PDFQDFLKTI-QPPENATEA 146
>gi|47169312|pdb|1UW4|A Chain A, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
gi|47169314|pdb|1UW4|C Chain C, The Structural Basis Of The Interaction Between Nonsense
Mediated Decay Factors Upf2 And Upf3
Length = 91
Score = 60.5 bits (145), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 10/96 (10%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 2 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 53
Query: 66 KPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR 101
+ F + +G+VF++ KG ++ AIVE+AP Q+
Sbjct: 54 NQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQK 89
>gi|26328937|dbj|BAC28207.1| unnamed protein product [Mus musculus]
Length = 216
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHV-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIFKDPDYLEFL 126
+ F + +G++F+ KG ++ A+VE+AP Q++ K +K + G+I DP+Y +FL
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFL 179
Query: 127 K 127
+
Sbjct: 180 E 180
>gi|388852343|emb|CCF53958.1| uncharacterized protein [Ustilago hordei]
Length = 505
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 64/230 (27%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFR-----------------PGKSSF- 48
++KVV+R LPP+L + D + P +
Sbjct: 116 KSKVVVRRLPPNLPEQVFWKAVSPWVRDAADCQAITSSSDGAEASSSTLPAPTPATPTVD 175
Query: 49 FYSY----------KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP 98
F S+ K + +RAY+ P + F + +GH+F + KG +IVE+AP
Sbjct: 176 FKSFIRGKLKSDSNKQNKLARAYIRFLDPTSLVTFHKNFDGHIFRDAKGKGSVSIVEFAP 235
Query: 99 SQRVPKPFS------------RKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQ-LER 145
Q+V S + D ++G+I KD DYL F+ E L + E Q ++R
Sbjct: 236 YQKVVLSPSTTGAGVGRGRRMKPDPKQGSIEKDADYLAFV-------EKLENVEDQGVKR 288
Query: 146 KEAELSGA---PKETL----------VVTPLMEYVRQKRAAESGAQESLA 182
E +L + PKE + +TPL+E++R + A+ +ES+A
Sbjct: 289 SEGDLLASLWDPKEKVREREEQVEKGKMTPLLEHLRAVKMAK---RESVA 335
>gi|443896125|dbj|GAC73469.1| nonsense-mediated decay protein Upf3 [Pseudozyma antarctica T-34]
Length = 572
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSF------------------ 48
++KVVIR LPP+L + D + C P S
Sbjct: 154 KSKVVIRRLPPNLPEAVFWKAVSPWIRDAAD--CQPPASDSLTSSSGEASASTSSASALT 211
Query: 49 ----FYSY----------KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV 94
F + K +++RAYV + F + +GH+F + K + AIV
Sbjct: 212 PTVDFKQFIPGKLKTDASKQNKHARAYVRFLDANALVLFHKHFDGHIFRDSKARETVAIV 271
Query: 95 EYAPSQRVPKPFSRK---DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQL 143
E+AP Q+V R+ D ++GTI D DYL F++ ++K E+ AE L
Sbjct: 272 EFAPYQKVVPARGRRSKPDPKQGTIETDADYLAFVERLSKAGEDDKRAEGDL 323
>gi|360043976|emb|CCD81522.1| upf3 regulator of nonsense transcripts-like protein [Schistosoma
mansoni]
Length = 338
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
KVV+R LPP L +D + + + Y FC G S +R Y+
Sbjct: 8 KVVVRGLPPKLGADDFIRIVDPLPSHTYFRFC---GADD---SLGGLGLTRVYITFNDMD 61
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP--------FSRKDSREGTIFKDP 120
+F+F E +G++F++ +G + A+VE+A Q + + D ++G++ KD
Sbjct: 62 SLFDFKERFDGYIFLDCEGNESSALVEFAVCQVLACAKGSSDDNGGGKVDKKQGSLLKDS 121
Query: 121 DYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV---------------VTPLME 165
Y++FL SAE+ E E+E P E+++ VTPL+
Sbjct: 122 AYVKFLSS--------QSAEVCAEISESESKKTPWESILDDLQNKEVNALQTQTVTPLLT 173
Query: 166 YVRQKRAAESGAQESLAVGRVGRRSRAASASKT 198
Y+ + E + R R+ A++ KT
Sbjct: 174 YLNNRGGDIRRKDEESSRHRQFRQGNASAIKKT 206
>gi|303278904|ref|XP_003058745.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459905|gb|EEH57200.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 417
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 87 GAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERK 146
G +++A VEYAP Q++P+ R D REGTI +D DY +F++ +A+ + SAE+ L+R+
Sbjct: 81 GGEWRARVEYAPYQKIPRLKPRLDKREGTIERDADYKKFVEKLAEDPVAMQSAEVLLDRR 140
Query: 147 E-----AELSGAPKETLVVTPLMEYVRQKRAAE 174
E E + K + ++ LM+++ KR AE
Sbjct: 141 EREKKALERANGGKAPVRLSALMKHLIAKREAE 173
>gi|336372911|gb|EGO01250.1| hypothetical protein SERLA73DRAFT_50679 [Serpula lacrymans var.
lacrymans S7.3]
Length = 127
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
SRAY+ + + F+ +GH+F ++ G + +A+VE+AP Q++P + D+R TI
Sbjct: 8 SRAYIAFRNEEQLAIFSREYDGHLFRDKAGNESQAVVEFAPYQKIPTEKKKADARNATIE 67
Query: 118 KDPDYLEFLKVI 129
KD DYL F++ +
Sbjct: 68 KDEDYLSFVESL 79
>gi|351702555|gb|EHB05474.1| Regulator of nonsense transcripts 3A [Heterocephalus glaber]
Length = 189
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 43 PGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR- 101
PG Y + YSRA + + P + F + +G+VF++ KG ++ A+VE+AP Q+
Sbjct: 95 PGADRLLYPH---LYSRACINFRNPDDILLFRDRFDGYVFMSSKGLEYPAVVEFAPFQKI 151
Query: 102 VPKPFSRKDSREGTIFKDPDYLEF 125
V + ++D++ G+I DP+Y F
Sbjct: 152 VRRKLKKRDTKMGSIEDDPEYTVF 175
>gi|302565879|pdb|2L08|A Chain A, Solution Nmr Structure Of Nonsense Mrna Reducing Factor 3a
From H. Sapiens, Northeast Structural Genomics
Consortium Target Hr4714b
Length = 97
Score = 58.5 bits (140), Expect = 8e-06, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 10 VVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAG 69
VVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 12 VVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNPDD 65
Query: 70 VFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR 101
+ F + +G++F++ KG ++ A+VE+AP Q+
Sbjct: 66 ILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQK 97
>gi|326924603|ref|XP_003208515.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial
[Meleagris gallopavo]
Length = 379
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 59 RAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSRE-GTIF 117
RAY+ + + F + +G+VFV+ KG ++ AIVE+AP Q+ K S+K + GTI
Sbjct: 1 RAYINFRNQEDIVLFRDRFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIE 60
Query: 118 KDPDYLEFLKVIAKPAENLPSA-EIQLERKEAELSGAPKETLV--VTPLMEYVRQK 170
DP+Y +FL+ + E L S E LE E+ KE + TPL+ +++ K
Sbjct: 61 DDPEYKKFLESYSADDEKLTSTPETLLE----EIEARNKELIAKKTTPLLNFLKNK 112
>gi|308811927|ref|XP_003083271.1| unnamed protein product [Ostreococcus tauri]
gi|116055150|emb|CAL57546.1| unnamed protein product [Ostreococcus tauri]
Length = 319
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 104/261 (39%), Gaps = 60/261 (22%)
Query: 8 TKVVIRHLPPSLSQNDL-LALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRA--- 60
TK+VIR LP L++ L RD F+ ++W +R R RA
Sbjct: 40 TKIVIRPLPSRLAREAFERTLARDGFDPPSAFFDWVGYRTVGRGGVDGRGTARRMRARSI 99
Query: 61 -YVELKKP-----------AGVFEF-AELLNGHVFVNEKGAQ-FKAIVEYAPSQRVPKPF 106
YV K F A G V E G + +A VE APSQ P+ F
Sbjct: 100 AYVACKTTEIAKRVRDRYHGATFRVRARDSEGRVIEGEDGVEETRATVERAPSQWTPRTF 159
Query: 107 SRK-----------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGA-- 153
+ ++ EGTI D +YL+F+ +E++ ER +GA
Sbjct: 160 GERYASTSGETNAVNALEGTIESDAEYLKFV------------SELESERTRTRTTGAVA 207
Query: 154 PKETLV---VTPLMEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTK----RG 206
PK+ T L+EY+ +KRAAE A + A G G ASKT T + G
Sbjct: 208 PKQESARRKSTALLEYIWKKRAAEERASKRAANGGKG-------ASKTKKTKQRGDADAG 260
Query: 207 SEKKKYILKDSAKNARRKDKS 227
K L D+A R K KS
Sbjct: 261 ENKSDKQLLDAAPKRRNKQKS 281
>gi|389585052|dbj|GAB67783.1| mRNA decay protein, partial [Plasmodium cynomolgi strain B]
Length = 266
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQ----RYSRA 60
+ K++IRHLPP+LS+++ F + D +++ + G K+ +SR
Sbjct: 120 VHNKKIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVP-----KNAGGDITHSRM 174
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDP 120
Y+ K EF + +G F + G +FKA+V +AP Q + ++ D T+ D
Sbjct: 175 YLSFKDDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKSDDMNNTLESDA 233
Query: 121 DYLEFLKVIAKPAE 134
+L+ + + P E
Sbjct: 234 YFLKCCEEMNNPEE 247
>gi|12861524|dbj|BAB32218.1| unnamed protein product [Mus musculus]
Length = 155
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHV-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV 102
+ F + +G++F+ KG ++ A+VE+AP Q++
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKI 154
>gi|344241026|gb|EGV97129.1| Regulator of nonsense transcripts 3A [Cricetulus griseus]
Length = 414
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R +++F S Y H YSRAY+ + P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLRPL--PAHDYFEVVAADLSL---YPHL-YSRAYINFRNP 119
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ 100
+ F + +G++F+ KG ++ A+VE+AP Q
Sbjct: 120 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 152
>gi|124513328|ref|XP_001350020.1| upf3, putative [Plasmodium falciparum 3D7]
gi|23615437|emb|CAD52428.1| upf3, putative [Plasmodium falciparum 3D7]
Length = 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 15 LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFA 74
LPP+L++ + F ++ D +++ F G +S S YSR Y+ K EF
Sbjct: 119 LPPTLTEENFFDSFSNNIKDELDYYYFVNGSASKDSS-NDIIYSRMYLSFKDDMKTDEFI 177
Query: 75 ELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAE 134
NG F + G ++KA+V YAP+Q + K ++ DSR T+ D +L+ + + P +
Sbjct: 178 RTQNGKFFYDLNGVKYKALVSYAPNQTLIKK-NKPDSRNNTLESDEYFLKCCEEMNNPVQ 236
>gi|393910095|gb|EFO23381.2| hypothetical protein LOAG_05102 [Loa loa]
Length = 433
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
K+V+R LP +++ L ++ F KSS S+ SR Y KK
Sbjct: 26 KIVLRRLPAAMTWEQLEIQLSPIPEFEFSEFIV--AKSSEGMSF-----SRVYFVFKKDD 78
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLE 124
F E NG+VFV+ KG + IVE AP+ +VP + +D + GTI D +Y +
Sbjct: 79 DTIAFKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHEYKK 138
Query: 125 FLKVIAKPA--ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
FL P + +P ++ E E E K + TPL +Y+ +K
Sbjct: 139 FLSERENPQKPDLIPVEQLIKEIDEKE-KMVEKNAVQETPLTQYMIRK 185
>gi|145349708|ref|XP_001419270.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579501|gb|ABO97563.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 325
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 39/206 (18%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLL-ALFRDHF---NDRYNWFCFRPGKSSFFYSYKHQRY 57
+E +R K+VIR+LP +L++ L AL RD F ++ + W+ + GK+
Sbjct: 37 RETRERRKIVIRNLPATLAREALEEALRRDGFGALDETFEWWEYARGKARGGTGGATTTT 96
Query: 58 -------SRAYVELKKPAGVFEFAELLNGHVF-VNEK-----------GAQFKAIVEYAP 98
SR Y +++ V E +G F V + G + +A VEYAP
Sbjct: 97 TRRATTPSRFYATVRRGETVKALRERYDGATFRVRARDEEGRAIEGGGGEETRARVEYAP 156
Query: 99 SQRVPKPFSRK-----------DSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKE 147
SQ P+ F + ++ EGTI +D DYL+FL + + + K
Sbjct: 157 SQWTPREFGERYATAGETAPAENALEGTIEEDEDYLKFLGALEAKKKANGATTGAATPKN 216
Query: 148 AELSGAPKETLVVTPLMEYVRQKRAA 173
AE AP+++ T L+E++ ++RAA
Sbjct: 217 AE--SAPRKS---TALLEFLWRQRAA 237
>gi|312076048|ref|XP_003140687.1| hypothetical protein LOAG_05102 [Loa loa]
Length = 464
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
K+V+R LP +++ L ++ F KSS S+ SR Y KK
Sbjct: 26 KIVLRRLPAAMTWEQLEIQLSPIPEFEFSEFIV--AKSSEGMSF-----SRVYFVFKKDD 78
Query: 69 GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLE 124
F E NG+VFV+ KG + IVE AP+ +VP + +D + GTI D +Y +
Sbjct: 79 DTIAFKERFNGYVFVDNKGGESVGIVELAPNPKVPHDKLETAKERDFKCGTIETDHEYKK 138
Query: 125 FLKVIAKPA--ENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
FL P + +P ++ E E E K + TPL +Y+ +K
Sbjct: 139 FLSERENPQKPDLIPVEQLIKEIDEKE-KMVEKNAVQETPLTQYMIRK 185
>gi|213408813|ref|XP_002175177.1| predicted protein [Schizosaccharomyces japonicus yFS275]
gi|212003224|gb|EEB08884.1| predicted protein [Schizosaccharomyces japonicus yFS275]
Length = 310
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 8 TKVVIRHLPPSLSQNDLL--------ALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSR 59
K+V+R LP +L + A+ R F+ + +P K +SY
Sbjct: 13 CKLVVRKLPANLPASVFWDSVKPWHEAIERSRFHPGH----LQPEKDLEVHSY------- 61
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKD 119
A + K P V F H FVN+ ++ A V AP+Q+ RKDSR GT+ +D
Sbjct: 62 AILLFKSPEQVTSFFLHYQNHAFVNKNNVRYHASVAVAPNQKW-VAHGRKDSRMGTLEED 120
Query: 120 PDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLV-------VTPLMEYVRQKR 171
D+++F K +L SAE K + AP++++V TPL+EYV+ K+
Sbjct: 121 EDFIQFKK-------SLESAEADSSLKPS-FPLAPEDSVVTTEPVKTTTPLLEYVKAKQ 171
>gi|325193356|emb|CCA27694.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 382
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 22/180 (12%)
Query: 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFC-----FRPGKSSFFYSYKHQR 56
KE + KV+IR++PPS++ ++ + YN C F GK+ + +
Sbjct: 96 KETISPCKVLIRNIPPSVTLEEMRVILAP-----YNISCNMIWRFVAGKTRM--NERPCV 148
Query: 57 YSRAYVELK-KPAGVFEFAELLNGHVF-VNEKGAQFKAIVEYAPSQRVPKPFSRKDSREG 114
R Y++ K E LNG N+K ++ V YAPS+R+P R+D + G
Sbjct: 149 TGRMYLDYKGDNVKAAELITSLNGFAIESNQKDSKRTLEVAYAPSRRLPGDRRRRDPKVG 208
Query: 115 TIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAE 174
IF DP YLEF++ + PA+ PS I +EAEL P + +++++ +K+ E
Sbjct: 209 EIFNDPAYLEFIEALDAPAQK-PS--IDSTSQEAELIEQP-----IPAVVQFLNEKKGRE 260
>gi|398392255|ref|XP_003849587.1| hypothetical protein MYCGRDRAFT_117814, partial [Zymoseptoria
tritici IPO323]
gi|339469464|gb|EGP84563.1| hypothetical protein MYCGRDRAFT_117814 [Zymoseptoria tritici
IPO323]
Length = 573
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHF---NDRYNWFCFRPGK-SSFFYSYKHQRYSRAYV 62
R K+ IR LPP L+ + D + N + +W +R GK S + Q SR Y+
Sbjct: 31 RLKLEIRRLPPGLTLTEFEETLGDEWKLGNGKVDWREYRQGKVKSGLGKFPEQ--SRCYI 88
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGA-------QFKAIVEYAPSQRVPKPFS-RKDSREG 114
L + V E VF ++ G + +AP QR P R D+R+G
Sbjct: 89 HLVNESMVKELDARFLAIVFHDKAGTYKHSDLKHLPPTIGFAPIQRTPLNVKVRADNRQG 148
Query: 115 TIFKDPDYLEFLKV----IAKPA 133
TI DP+++ FL+ I KPA
Sbjct: 149 TIDTDPEFIAFLEAETQPIVKPA 171
>gi|221058833|ref|XP_002260062.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193810135|emb|CAQ41329.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 266
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCF-------RPGKSSFFYSYKHQRY 57
+ K++IRHLPP+LS+++ F + D +++ + PG +
Sbjct: 120 VHNKKIIIRHLPPTLSEDNFFDSFPSNLKDELDYYYYVNGCVPKNPGGDI--------TH 171
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
SR Y+ K EF + +G F + G +FKA+V +AP Q + ++ D T+
Sbjct: 172 SRMYLSFKDDLKTKEFIKTQHGKFFYDSNGGKFKAMVSFAPYQTIIHK-NKLDDMNNTLE 230
Query: 118 KDPDYLEFLKVIAKPAENLPSAE--IQLERKEAELSGAPKETL 158
D +L++ E + ++E I+ ++ +L KE L
Sbjct: 231 SDAYFLKY-------CEEMNNSEEPIKKDQDNGDLINVMKEDL 266
>gi|194672185|ref|XP_607889.4| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|297481373|ref|XP_002692050.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Bos
taurus]
gi|296481608|tpg|DAA23723.1| TPA: UPF3 regulator of nonsense transcripts homolog A isoform 2
[Bos taurus]
Length = 479
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPPSL++ L H +++F F S Y H YSRAY+ + P
Sbjct: 67 SKVVIRRLPPSLTKEQLEQQL--HPLPAHDYFEFFTADVSL---YPHL-YSRAYINFRNP 120
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVE 95
+ F + +G++F++ K ++K +E
Sbjct: 121 DDILLFRDRFDGYIFIDSKDPEYKKFLE 148
>gi|164663327|ref|XP_001732785.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
gi|159106688|gb|EDP45571.1| hypothetical protein MGL_0560 [Malassezia globosa CBS 7966]
Length = 373
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 23/185 (12%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRP---GKSSFFYSYKHQRYSR------ 59
KVV+R LPP L++N + + P +++F + ++ S
Sbjct: 13 KVVVRDLPPHLTENVFWEAVSPWVRLKADPVTNEPRTASRTAFVQGKRSEQASEVDTLSV 72
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQR----VPKPFSRKDSREGT 115
AY+ V +F + GH+F + KG + A V+ A Q P + GT
Sbjct: 73 AYINFSDFKYVLDFVQNFQGHIFRDSKGQNYHAFVDNALFQSYMRWAPDKYGES---TGT 129
Query: 116 IFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAES 175
I + +Y +F+ + P+ P+ L E + A + TPL+E+VR+++
Sbjct: 130 IQQTQEYKDFVAFLEAPSTLAPAPAPGLSASETDSDKAS----ITTPLVEFVRKQK---Q 182
Query: 176 GAQES 180
GAQE+
Sbjct: 183 GAQET 187
>gi|296189037|ref|XP_002742609.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2
[Callithrix jacchus]
Length = 439
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L H +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQL--HPLPAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVE 95
+ F + +G+VF++ K ++K +E
Sbjct: 122 DDILLFRDRFDGYVFLDSKDPEYKKFLE 149
>gi|297694524|ref|XP_002824528.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Pongo
abelii]
Length = 443
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
P + F E +G++F++ K ++K +E
Sbjct: 121 PDDILLFRERFDGYIFLDSKDPEYKKFLE 149
>gi|367013556|ref|XP_003681278.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
gi|359748938|emb|CCE92067.1| hypothetical protein TDEL_0D04830 [Torulaspora delbrueckii]
Length = 365
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 8 TKVVIRHLPPSLSQNDLLALFR---DHFND--RYNWFCFR---PGKSSFFYSYKHQRYSR 59
K+V+R LPP LSQ+ L + F+D W+ R P K S YSR
Sbjct: 65 VKLVLRLLPPDLSQDQFLETIKPEVGEFSDCGVLEWYYVRGHYPQKLS-----TRPVYSR 119
Query: 60 AYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV-------EYAPSQRVPKPFSRKDSR 112
Y+ + + EF + + FV++K + + P+ P P S +
Sbjct: 120 CYLIFESTESLAEFTKKVQPIKFVDDKDNATNVVTRVSTYVKRFVPNTVDPSPVSA--AL 177
Query: 113 EGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRA 172
EGTI +DP +L F+K S +I LE K+++ S A + ++ PL + V +++A
Sbjct: 178 EGTITEDPLFLTFMK----------SLKI-LEEKKSDYSFA--DVSILKPLEKEVAKQKA 224
Query: 173 AESGAQ 178
ES Q
Sbjct: 225 VESEIQ 230
>gi|426376077|ref|XP_004054835.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Gorilla
gorilla gorilla]
Length = 443
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
P + F + +G++F++ K ++K +E
Sbjct: 121 PDDILLFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|18375525|ref|NP_542418.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta [Homo
sapiens]
gi|27881818|gb|AAH23569.1| UPF3 regulator of nonsense transcripts homolog A (yeast) [Homo
sapiens]
gi|119629657|gb|EAX09252.1| UPF3 regulator of nonsense transcripts homolog A (yeast), isoform
CRA_d [Homo sapiens]
Length = 443
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
P + F + +G++F++ K ++K +E
Sbjct: 121 PDDILLFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|402902531|ref|XP_003914154.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Papio
anubis]
Length = 430
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + +F ++ Y H YSRAY+ +
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRN 120
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
P + F + +G++F++ K ++K +E
Sbjct: 121 PDDILLFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|339246413|ref|XP_003374840.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
gi|316971900|gb|EFV55622.1| choline-phosphate cytidylyltransferase B [Trichinella spiralis]
Length = 703
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 25/147 (17%)
Query: 10 VVIRHLPPSLSQNDLLALF-----RDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL 64
V++R LPP +++ +LLA+ D F F P FY K +R Y++
Sbjct: 323 VILRRLPPYITEEELLAILSPLPPHDSFR-------FDPP----FYP-KQWECARVYIQF 370
Query: 65 KKPAGVFEFAELLNGHVFVNEKGA------QFKAIVEYAPSQRVPKPFSRKDSREGTIFK 118
K V +F + NG+VFV+ G+ + IVE AP + +++ GTI +
Sbjct: 371 KNIEDVLQFRDTFNGYVFVDACGSNENDCNESIGIVEAAPYRENFGVVGKRNPLAGTIEQ 430
Query: 119 DPDYLEFLKVIAKP--AENLPSAEIQL 143
+YL+F++ + P A + S E QL
Sbjct: 431 SEEYLKFVEKLNAPVKAPDTVSFESQL 457
>gi|365983412|ref|XP_003668539.1| hypothetical protein NDAI_0B02610 [Naumovozyma dairenensis CBS 421]
gi|343767306|emb|CCD23296.1| hypothetical protein NDAI_0B02610 [Naumovozyma dairenensis CBS 421]
Length = 441
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 31/184 (16%)
Query: 9 KVVIRHLPPSLSQNDLL--ALFRDHFNDRY-NWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
K+V+RHLPP+L+ + + + +D Y W+ + SS + H YSRAY
Sbjct: 113 KLVLRHLPPNLNSENFIKNVSLSKNIHDLYLEWYYIQGHYSSKLFKQPH--YSRAYFIFD 170
Query: 66 KPAGVFEFAELLNGHVFVNEK----------GAQFKAIVEYAP--SQRVPKPFSR----- 108
+ +FA ++ F+++ + K+I E P S+ PK R
Sbjct: 171 SIVKLNKFASIVKNMKFIDDHENVMIPLLTLSSYIKSIEENVPERSRNNPKKHQRTKAPK 230
Query: 109 KDSREGTIFKDPDYLEFL-------KVIAKPAENL--PSAEIQLERKEAELSGAPKETLV 159
KD EGTI D + FL KVI +L P + +KEA+++ A K L
Sbjct: 231 KDILEGTIENDDLFKMFLGRSKENDKVIDYGNFSLLRPVRKEVSRQKEADIAAAKKSELA 290
Query: 160 VTPL 163
+T L
Sbjct: 291 LTKL 294
>gi|388517151|gb|AFK46637.1| unknown [Lotus japonicus]
Length = 57
Score = 50.4 bits (119), Expect = 0.002, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG 44
L RTKVV+RHLPP+LSQ L+A F RYNW F P
Sbjct: 2 LDRTKVVLRHLPPTLSQASLVAQIDAAFLGRYNWLSFCPA 41
>gi|332264284|ref|XP_003281174.1| PREDICTED: regulator of nonsense transcripts 3A isoform 2 [Nomascus
leucogenys]
Length = 444
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
+KVVIR LPP L++ L R +D + F ++ Y H YSRAY+ +
Sbjct: 69 SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEIF------AADLSLYPHL-YSRAYINFRN 121
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVE 95
P + F + +G++F++ K ++K +E
Sbjct: 122 PDDILLFRDRFDGYIFLDSKDPEYKKFLE 150
>gi|380791535|gb|AFE67643.1| regulator of nonsense transcripts 3A isoform hUpf3pdelta, partial
[Macaca mulatta]
Length = 233
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRPL--PAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVE 95
+ F + +G++F++ K ++K +E
Sbjct: 122 DDILLFRDRFDGYIFLDSKDPEYKKFLE 149
>gi|299470177|emb|CBN78205.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 475
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 94 VEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGA 153
VE AP Q++ K ++D R GTI KD Y F + PA+ LPSA++Q + +E+E
Sbjct: 147 VEAAPFQKLFKQKPKRDVRVGTIEKDASYKAFCAALQSPAQPLPSADVQADIRESEGKEE 206
Query: 154 PKETLVVTPLMEYVRQKRA 172
PK L++++R++ A
Sbjct: 207 PKPQ---NALLDFLRERGA 222
>gi|290994230|ref|XP_002679735.1| predicted protein [Naegleria gruberi]
gi|284093353|gb|EFC46991.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 94 VEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKPAE 134
+EY P Q VPKP +KD R+GTIFKD YL FL+ + +P +
Sbjct: 309 IEYCPLQMVPKP-KKKDPRDGTIFKDEHYLRFLEQLKQPKD 348
>gi|169607309|ref|XP_001797074.1| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
gi|160701385|gb|EAT85362.2| hypothetical protein SNOG_06711 [Phaeosphaeria nodorum SN15]
Length = 456
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 45/208 (21%)
Query: 19 LSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAE 75
L++++ + D + + +W +R GK S + K R +RAY+ + K V +
Sbjct: 40 LTRSEFETMVGDEWKPGAGKVDWVNWRKGKISK-DAAKPSRPARAYIHVTKQEHVPMLGD 98
Query: 76 LLNGHVFVNE-KGAQFKAIV-----EYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVI 129
+ F + K Q A+V E+AP ++P R D+R+GTI +D ++ +FL+ +
Sbjct: 99 RIRDSTFHDAAKSWQDSALVGPPTLEFAPFSKMPGGRRRNDNRQGTIDQDQEFKDFLESL 158
Query: 130 AKPAENLPSAEIQLERKEAELSGAPKET-----LVVTPLMEYVRQKRA------------ 172
P S AP +T + TPL+E +R+K+A
Sbjct: 159 TNPITK---------------SAAPDDTQKQDKVKTTPLIEALREKKANKDKPNAKGRNA 203
Query: 173 ---AESGAQESLAVGRVGRRSRAASASK 197
A+ A E A G+ G+ + A + K
Sbjct: 204 RGDAKEDATEKKASGKQGKENAATAGDK 231
>gi|170596366|ref|XP_001902739.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589404|gb|EDP28411.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 206
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSR 112
+SR Y KK F E +G+VFV++KG + IVE AP+ +VP + +D +
Sbjct: 88 FSRVYFVFKKDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFK 147
Query: 113 EGTIFKDPDYLEFL 126
GTI D +Y +FL
Sbjct: 148 CGTIEADHEYKKFL 161
>gi|224119920|ref|XP_002331095.1| predicted protein [Populus trichocarpa]
gi|222872823|gb|EEF09954.1| predicted protein [Populus trichocarpa]
Length = 135
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 15/109 (13%)
Query: 164 MEYVRQKRAAESGAQESLAVGRVGRRSRAASASKTSSTTTKRGSEKKK-----YILKDSA 218
ME++RQKRAA+SG + L+ G+ RR A + SS+++KRGSEKK+ Y+L+D+
Sbjct: 1 MEFIRQKRAAKSGPRRILSNGKPSRR--AGGSGSPSSSSSKRGSEKKRASTTMYVLRDTV 58
Query: 219 KNARRKDKSTFTVVAKREDQP-------ASSSGKETSASET-ICGVEGS 259
K K+KS + V K +D+ S SG E S ET + G+ G+
Sbjct: 59 KGTSGKEKSIYAQVPKLDDRQLSKAVTLGSGSGTEVSEEETAVSGITGT 107
>gi|114694183|ref|XP_001175337.1| PREDICTED: regulator of nonsense transcripts 3A-like [Pan
troglodytes]
Length = 411
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 9 KVVIRHLPPSLSQNDLLALFRD-HFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+VVI LPP L++ L R +D + +F ++ Y H YSRAY+ + P
Sbjct: 39 QVVICRLPPGLTKEQLEEQLRPLPAHDYFEFF------AADLSLYPHL-YSRAYINFRNP 91
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVE 95
+ F + +G++F++ K ++K +E
Sbjct: 92 DDILLFRDRFDGYIFLDSKDPEYKKFLE 119
>gi|302419035|ref|XP_003007348.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261352999|gb|EEY15427.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 593
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 53 KHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV------EYAPSQRVPKPF 106
K R R Y+ +KK + E E++ + + K + EY +++P
Sbjct: 49 KSSRPGRLYLHVKKRESLAELDEIVQTRTWEDAKLTHNNPCLVGPPSLEYCIYKKIPGAR 108
Query: 107 SRKDSREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEY 166
R D+R+GTI +DP+++ +L + P E + + P + TPL+EY
Sbjct: 109 KRSDARQGTIDQDPEFMSYLLSLTNPET---EKEGETGEDPSAGESKPDTKVTTTPLIEY 165
Query: 167 VRQ 169
+++
Sbjct: 166 IKE 168
>gi|148690218|gb|EDL22165.1| mCG3697, isoform CRA_a [Mus musculus]
Length = 159
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVV+R LPP L++ L R P + H + +L+ P
Sbjct: 66 SKVVLRRLPPGLTKEQLEEQLR-------------PLPA-------HDYFEVVAADLRNP 105
Query: 68 AGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ 100
+ F + +G++F+ KG ++ A+VE+AP Q
Sbjct: 106 DDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQ 138
>gi|194377606|dbj|BAG57751.1| unnamed protein product [Homo sapiens]
Length = 146
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
+KVVIR LPP L++ L R +++F F S Y H YSRAY+ + P
Sbjct: 68 SKVVIRRLPPGLTKEQLEEQLRP--LPAHDYFEFFAADLSL---YPHL-YSRAYINFRNP 121
Query: 68 AGVFEFAELLNGHVFVNEKG 87
+ F + +G++F++ KG
Sbjct: 122 DDILLFRDRFDGYIFLDSKG 141
>gi|388581361|gb|EIM21670.1| hypothetical protein WALSEDRAFT_11010, partial [Wallemia sebi CBS
633.66]
Length = 62
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
SRAY+ K+ A + F +GH+ + +A +E+AP QR P+P ++D R+GTI
Sbjct: 7 SRAYITFKEYAQLLSFHAGFDGHL-------ESRASIEFAPYQRTPQPKQKQDQRQGTI 58
>gi|156348614|ref|XP_001621914.1| hypothetical protein NEMVEDRAFT_v1g143243 [Nematostella
vectensis]
gi|156208259|gb|EDO29814.1| predicted protein [Nematostella vectensis]
Length = 90
Score = 44.7 bits (104), Expect = 0.11, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66
KVVIR LPPSL + +L +++ D +++F F G+ SF +SRAY+ K
Sbjct: 1 KVVIRRLPPSLKEEEL----KEYLGDLPEHDFFYFVDGQMSF----GPVLFSRAYINFKN 52
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEY 96
+ +F + +G F + KG + I ++
Sbjct: 53 QEDIIKFRDQFDGSSFFDNKGKKVFLISQH 82
>gi|238604948|ref|XP_002396333.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
gi|215468687|gb|EEB97263.1| hypothetical protein MPER_03460 [Moniliophthora perniciosa FA553]
Length = 100
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIF 117
SRAYV K + F +G NE +A+VE+AP Q+VP + D+R TI
Sbjct: 9 SRAYVAFKTEEQLTTFHREYDG----NES----QAVVEFAPYQKVPSDKKKLDARNATIE 60
Query: 118 KDPDYLEFLKVIAKP 132
+D DY+ F++ + +P
Sbjct: 61 QDEDYISFVQSLNQP 75
>gi|25148417|ref|NP_741600.1| Protein SMG-4, isoform b [Caenorhabditis elegans]
gi|20069144|emb|CAD18872.2| Protein SMG-4, isoform b [Caenorhabditis elegans]
Length = 368
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPA 68
KVV+R LP ++++++L + + F P +S+ Y+ V +
Sbjct: 10 KVVLRRLPKYMTEHEVLEQISPLPEEVIGTY-FHPAN----FSFDRCAYATLTVNFSEYC 64
Query: 69 -GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYLE 124
+ EF +G++FV+ +G A+VE A +Q K ++D+R G I D YL+
Sbjct: 65 DSMMEFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYLD 124
Query: 125 FLKVI 129
F K +
Sbjct: 125 FCKKL 129
>gi|349578284|dbj|GAA23450.1| K7_Upf3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 387
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-RE 113
YSR + + + A + F++ K ++ +P + S+KDS
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDSALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNEN 224
>gi|151943350|gb|EDN61663.1| NMD pathway component [Saccharomyces cerevisiae YJM789]
gi|207345166|gb|EDZ72074.1| YGR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 387
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ I + EN
Sbjct: 203 GTIEEDEIFKTFMNSIKQLNEN 224
>gi|324513196|gb|ADY45432.1| Regulator of nonsense transcripts 3B [Ascaris suum]
Length = 447
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPK----PFSRKDSR 112
+ RAY K + F + NG+VF++ +G++ +VE AP+ +V + ++D +
Sbjct: 65 FPRAYFVFKNDEDIIAFRDRFNGYVFIDSQGSESMGLVELAPNPKVSRHKLEDSKKRDKK 124
Query: 113 EGTIFKDPDYLEFL-------KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLME 165
TI + +Y +F+ K + P E EI+++ K A L A +E TPL +
Sbjct: 125 CATIDTEVEYKKFVDDRENPPKPVIVPIEQR-IKEIEMKEKNA-LENAVQE----TPLTQ 178
Query: 166 YVRQK 170
Y+ +K
Sbjct: 179 YMIRK 183
>gi|365760613|gb|EHN02321.1| Upf3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 387
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ +D A+ R ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADDFFAILRGANNDGDLKQDIQDKFKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS-QRVPKPFSRKDSRE 113
YSR + + + A + F++ K + +P ++V + R + E
Sbjct: 143 STYSRCNFLFDSLSDLKKCAAFIKSCKFIDNKDNVTIPDLNLSPYVKKVTQKSKRDSALE 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLDEN 224
>gi|254578402|ref|XP_002495187.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
gi|238938077|emb|CAR26254.1| ZYRO0B05412p [Zygosaccharomyces rouxii]
Length = 351
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYS---YKHQRYSRAYVEL 64
K+++R LPP+L+++ L + D +W R +Y+ + YSR Y
Sbjct: 67 VKLILRLLPPTLTKDQFLETLKPVVGDLSSWQLLRWYYVQGYYTSKIFAEPVYSRCYFIF 126
Query: 65 KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSR-----EGTIFKD 119
+ FA+L+ FV++K KA+++ + +RK SR EG++ +D
Sbjct: 127 SNMDQLKHFAQLVEPLTFVDDKDNSAKAVLKLSSYCESYDDDNRKPSRSSEALEGSLDQD 186
Query: 120 PDYLEFL 126
+ F+
Sbjct: 187 IFFQTFM 193
>gi|190406907|gb|EDV10174.1| nonsense-mediated mRNA decay protein 3 [Saccharomyces cerevisiae
RM11-1a]
Length = 387
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSEWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNEN 224
>gi|170596368|ref|XP_001902740.1| Smg-4/UPF3 family protein [Brugia malayi]
gi|158589405|gb|EDP28412.1| Smg-4/UPF3 family protein [Brugia malayi]
Length = 176
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVP 103
+SR Y KK F E +G+VFV++KG + IVE AP+ +VP
Sbjct: 88 FSRVYFVFKKDDDAIAFKERFHGYVFVDDKGGESIGIVELAPNPKVP 134
>gi|323304840|gb|EGA58598.1| Upf3p [Saccharomyces cerevisiae FostersB]
Length = 334
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDBGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-RE 113
YSR + + + A + F++ K ++ +P + S+KDS
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDSALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 149
GTI +D + F+ + + EN L S E I+LE K AE
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 254
>gi|25148414|ref|NP_741601.1| Protein SMG-4, isoform a [Caenorhabditis elegans]
gi|13548374|emb|CAA94820.2| Protein SMG-4, isoform a [Caenorhabditis elegans]
Length = 329
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 85/191 (44%), Gaps = 13/191 (6%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKP 67
KVV+R LP ++++++L + + F P +S+ Y+ V +
Sbjct: 9 VKVVLRRLPKYMTEHEVLEQISPLPEEVIGTY-FHPAN----FSFDRCAYATLTVNFSEY 63
Query: 68 A-GVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYL 123
+ EF +G++FV+ +G A+VE A +Q K ++D+R G I D YL
Sbjct: 64 CDSMMEFERRFDGYIFVDSRGNDSAAVVEAASNQNFAKCDRNRMKEDTRVGAILTDKYYL 123
Query: 124 EFLKVIAKP-AENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQKRAAESGAQESLA 182
+F K + + A + + E Q+ + + + TPL++Y +K E+G +
Sbjct: 124 DFCKKLEEERAIPILTLEQQIRKLNQPDDARTQIDKMETPLVKYFFEK---ETGKRRDYD 180
Query: 183 VGRVGRRSRAA 193
R R + A
Sbjct: 181 ARRQRRDEKRA 191
>gi|6321509|ref|NP_011586.1| Upf3p [Saccharomyces cerevisiae S288c]
gi|1351373|sp|P48412.1|UPF3_YEAST RecName: Full=Nonsense-mediated mRNA decay protein 3; AltName:
Full=Up-frameshift suppressor 3
gi|1051102|gb|AAC41671.1| up-frameshift suppressor [Saccharomyces cerevisiae]
gi|1323099|emb|CAA97074.1| UPF3 [Saccharomyces cerevisiae]
gi|285812266|tpg|DAA08166.1| TPA: Upf3p [Saccharomyces cerevisiae S288c]
gi|392299326|gb|EIW10420.1| Upf3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 387
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNEN 224
>gi|256269078|gb|EEU04414.1| Upf3p [Saccharomyces cerevisiae JAY291]
Length = 387
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNEN 224
>gi|51012951|gb|AAT92769.1| YGR072W [Saccharomyces cerevisiae]
Length = 387
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDDGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ + + EN
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNEN 224
>gi|150863913|ref|XP_001382558.2| hypothetical protein PICST_67017 [Scheffersomyces stipitis CBS
6054]
gi|149385169|gb|ABN64529.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 453
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 3 EPLQRTKVVIRHLPPSLSQN---DLLALFRD----HFNDRYNWFCFRPGKSSFFYSYKHQ 55
E KVV+R LPP+L +N D L+ F D + +Y P K ++
Sbjct: 41 ESYSNVKVVLRLLPPTLDENGFYDQLSAFYDVNSPNITSKYYVKGSYPAK-----PFEAP 95
Query: 56 RYSRAYVELKKPAGVFEFAELLNGHVFVN-EKGAQFKAIVEYAPSQRVPKPFSRKDSREG 114
YSRAY+ V F +NG FV E F +VE A ++P KD +E
Sbjct: 96 IYSRAYITFHTSDDVVFFMSSVNGKPFVEPETEDSFTPLVERAIFNKMP----AKDGKEE 151
Query: 115 TI 116
+I
Sbjct: 152 SI 153
>gi|259146575|emb|CAY79832.1| Upf3p [Saccharomyces cerevisiae EC1118]
Length = 387
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSKVLKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN 135
GTI +D + F+ I + EN
Sbjct: 203 GTIEEDEIFKTFMNSIKQLNEN 224
>gi|367006657|ref|XP_003688059.1| hypothetical protein TPHA_0M00500 [Tetrapisispora phaffii CBS 4417]
gi|357526366|emb|CCE65625.1| hypothetical protein TPHA_0M00500 [Tetrapisispora phaffii CBS 4417]
Length = 389
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND------RYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
K+V++ LPP+L++ + + ND N F F GK S + YSR+Y+
Sbjct: 67 KLVLQSLPPALTETEFWDAVKSVVNDTNEYQINLNSFYFVQGKLSD-KPFHDPVYSRSYI 125
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV-------PKPFSRKDSREGT 115
K + +FA + F + A ++ +P R KP + K EGT
Sbjct: 126 MFKDMENLRKFALKIQDVTFTDANNDSSVASIKISPYNRSYNSALEKKKPAANKKVLEGT 185
Query: 116 IFKDPDYLEF---LKVIAKPAENLPSAEIQL 143
I DP + F +K++A+ + + S EI L
Sbjct: 186 IKDDPLFKAFVQSMKIMAESDQYMYS-EINL 215
>gi|358422817|ref|XP_003585492.1| PREDICTED: regulator of nonsense transcripts 3B-like, partial [Bos
taurus]
Length = 123
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFND--RYNWFCFRPGKSSFFYSYKHQRYSRAYVELK 65
+KVVIR LPP+L++ L ++H +++F F +S Y H Y+RAY+ K
Sbjct: 51 SKVVIRRLPPTLTKEQL----QEHLQPMPEHDYFEFFSNDTSL---YPHM-YARAYINFK 102
Query: 66 KPAGVFEFAELLNGHVFVNEK 86
+ F + +G+VF++ K
Sbjct: 103 NQEDIILFRDRFDGYVFLDNK 123
>gi|444321012|ref|XP_004181162.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
gi|387514206|emb|CCH61643.1| hypothetical protein TBLA_0F01000 [Tetrapisispora blattae CBS 6284]
Length = 473
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 22/138 (15%)
Query: 9 KVVIRHLPPSLSQNDLL-----AL---FRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRA 60
K+V+R LPP+L++ + AL F++ FN +++ S+ F+ H SRA
Sbjct: 177 KLVVRLLPPNLTEEQFIETIEPALGKDFKEKFNIFQSYYVQGESNSTPFHGPVH---SRA 233
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP--------SQRVPKPFSRKDSR 112
Y L+ + + E++ F+++K +A + +P S + KP S+ +S+
Sbjct: 234 YFILENMEDLKKLGEIIQKLEFIDDKDNLTRASLLLSPYVKDLVDESLLIKKP-SKANSK 292
Query: 113 --EGTIFKDPDYLEFLKV 128
EGT+ DP + FLK
Sbjct: 293 VGEGTLQNDPLFKTFLKA 310
>gi|341879389|gb|EGT35324.1| CBN-SMG-4 protein [Caenorhabditis brenneri]
Length = 366
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL-- 64
+ KVV+R LP ++++++L + F FRP +F R + A + L
Sbjct: 13 QVKVVLRRLPKYMTESEVLEQISPLPAEVIETF-FRPANFAF------DRAAYATLTLVF 65
Query: 65 -KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ---RVPKPFSRKDSREGTIFKDP 120
+ + +F +G++FV+ +G A+VE A +Q + + ++D+R G + D
Sbjct: 66 SEYCDSLMDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDK 125
Query: 121 DYLEFLK 127
YL+F K
Sbjct: 126 YYLDFCK 132
>gi|323333512|gb|EGA74906.1| Upf3p [Saccharomyces cerevisiae AWRI796]
Length = 316
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 35/172 (20%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS +K+
Sbjct: 87 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSKVFKN 142
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 143 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 202
Query: 114 GTIFKDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 149
GTI +D + F+ + + EN L S E I+LE K AE
Sbjct: 203 GTIEEDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 254
>gi|68010359|ref|XP_670717.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56486237|emb|CAH93914.1| conserved hypothetical protein [Plasmodium berghei]
Length = 120
Score = 42.0 bits (97), Expect = 0.82, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTI 116
+SR Y+ K EF + +G F + G ++KA V +AP+Q + +R D+R T+
Sbjct: 5 HSRIYLSFKDYMKTEEFIKTQDGKYFYDTNGVKYKANVTFAPNQTIIHK-NRIDNRNNTL 63
Query: 117 FKDPDYLEFLKVIAKPAE 134
DP +L+ + + P E
Sbjct: 64 ESDPYFLKCCEEMHNPIE 81
>gi|149245801|ref|XP_001527377.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449771|gb|EDK44027.1| hypothetical protein LELG_02206 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 418
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFY---SYKHQ-----RYSRA 60
K+V+R LPP+LS++D L + + N +Y SY + YSRA
Sbjct: 49 KLVVRLLPPALSESDFLTQLEGLYPQKENKIV------RHYYVKGSYPQKPFELPVYSRA 102
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRV 102
YV K A + EF L+ F +EK + I+E + Q++
Sbjct: 103 YVSFKNVADMNEFTGLVRDKSFHDEKDSTI-PIIEKSLFQKM 143
>gi|374293762|ref|YP_005040785.1| putative diguanylate cyclase protein, sensory box/GGDEF domain
[Azospirillum lipoferum 4B]
gi|357427165|emb|CBS90104.1| putative diguanylate cyclase protein, sensory box/GGDEF domain
[Azospirillum lipoferum 4B]
Length = 1004
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 378 FDGNTKRSSDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQANGERLSS 437
+DG R+ DR A ++ + A E RTR+ D PD WT R D G R++
Sbjct: 471 YDGEELRAHADRIAAELGCAAPAGFEALVARTRDGDLPDSGEWTGLRKD-----GARIAL 525
Query: 438 SQPTQLLSDSVEVTRGEMKDDM 459
S T +L DS RG + M
Sbjct: 526 SAATSVLRDSGGAVRGYLTVVM 547
>gi|68479205|ref|XP_716408.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
gi|68479334|ref|XP_716346.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438012|gb|EAK97350.1| hypothetical protein CaO19.5277 [Candida albicans SC5314]
gi|46438075|gb|EAK97412.1| hypothetical protein CaO19.12742 [Candida albicans SC5314]
Length = 407
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQR--------YSRA 60
K VIR LPPSL++++ L ++ + C F+Y H YSRA
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKIC------QFYYIQGHYPKTNFEVPIYSRA 103
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV 94
YV EF L F NE F +I+
Sbjct: 104 YVNFSNQHDSLEFLNFLKEKPFENE----FDSII 133
>gi|167574995|ref|ZP_02367869.1| aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
protein [Burkholderia oklahomensis C6786]
Length = 756
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 72/193 (37%), Gaps = 27/193 (13%)
Query: 319 GRLIRKILLNNETRQTQSVTGVQPQQKMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSF 378
GRL+ +L + SV VQP+ N PL + PN HVTNN SP
Sbjct: 484 GRLVPATMLEHPFTPAPSVPMVQPEGG----GDRNAIPL---YTFPNLHVTNNFSPTMPL 536
Query: 379 DGNTKRS--------SDDRFARKVLHGSGAVSEKQEKRTRNKDRPDRVVWTPRRSDVSQA 430
+ + RS S + F ++ H +++ R K D PR D
Sbjct: 537 NTSAMRSLGAHMNVFSIESFIDELAHA----AQEDPVAFRLKHMED-----PRARDAIAL 587
Query: 431 NGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSKTVDIAAPTSGGSHRHNGRRAATN--- 487
R +P + V G+ K+ M+Y + V+I+ G A +
Sbjct: 588 AARRFGWPRPPRKPGRGVGFAFGKYKNLMAYVAMAVEISVARETGQVVLEHAEVAVDSGQ 647
Query: 488 ITKDDGCINMIEG 500
I DG N IEG
Sbjct: 648 IVNPDGVRNQIEG 660
>gi|238878415|gb|EEQ42053.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 407
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQR--------YSRA 60
K VIR LPPSL++++ L ++ + C F+Y H YSRA
Sbjct: 50 KFVIRLLPPSLTESEFLNQLATYYPYHASKIC------QFYYIQGHYPKTNFEVPIYSRA 103
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV 94
YV EF L F NE F +I+
Sbjct: 104 YVNFSNQHDSLEFLNFLKEKPFENE----FDSII 133
>gi|341881193|gb|EGT37128.1| hypothetical protein CAEBREN_00499 [Caenorhabditis brenneri]
Length = 330
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVEL-- 64
+ KVV+R LP ++++++L + F FRP +F R + A + L
Sbjct: 13 QVKVVLRRLPKYMTESEVLEQISPLPAEVIETF-FRPANFAF------DRAAYATLTLVF 65
Query: 65 -KKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQ---RVPKPFSRKDSREGTIFKDP 120
+ + +F +G++FV+ +G A+VE A +Q + + ++D+R G + D
Sbjct: 66 SEYCDSLLDFERRFDGYIFVDSRGNDSTAVVEAAVNQHFSKCDRARMKQDTRVGALDTDK 125
Query: 121 DYLEFLKVI 129
YL+F K +
Sbjct: 126 YYLDFCKKL 134
>gi|365765670|gb|EHN07177.1| Upf3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 342
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS-- 51
++ K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS
Sbjct: 38 MKEFKLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSK 93
Query: 52 -YKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD 110
K+ YSR + + + A + F++ K ++ +P + S+KD
Sbjct: 94 VXKNSTYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKD 153
Query: 111 -SREGTIFKDPDYLEFLKVIAKPAEN 135
+ GTI +D + F+ + + EN
Sbjct: 154 AALVGTIEEDEIFKTFMNSMKQLNEN 179
>gi|402580308|gb|EJW74258.1| hypothetical protein WUBG_14834, partial [Wuchereria bancrofti]
Length = 104
Score = 40.8 bits (94), Expect = 1.9, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 73 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVP----KPFSRKDSREGTIFKDPDYLEFL 126
F E +G+VFV++KG + IVE AP+ +VP + +D + GTI D +Y +FL
Sbjct: 9 FKERFHGYVFVDDKGGESIGIVELAPNPKVPHDKLEDAKERDFKCGTIEADHEYKKFL 66
>gi|401625662|gb|EJS43660.1| upf3p [Saccharomyces arboricola H-6]
Length = 386
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND------------RYNWFCFRPGKSSFFYS---YK 53
K+VIR LPP+L+ +D + R+ ND +Y+ +CF G YS +K
Sbjct: 86 KLVIRLLPPNLTADDFFTMLRNA-NDGTEDKEDIQDKLKYSDWCFFEGH----YSTKVFK 140
Query: 54 HQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDS-R 112
+ YSR + + + A + F++ K ++ +P + S++DS
Sbjct: 141 NLTYSRCNFLFDSLSDLEKCAAFIKTCKFIDNKDNVTIPDLKLSPYVKKFTQTSKRDSVL 200
Query: 113 EGTIFKDPDYLEFLKVIAKPAEN 135
EGTI +D + F+ + + EN
Sbjct: 201 EGTIQEDEIFKTFMNSVKQLNEN 223
>gi|255712613|ref|XP_002552589.1| KLTH0C08426p [Lachancea thermotolerans]
gi|238933968|emb|CAR22151.1| KLTH0C08426p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 9 KVVIRHLPPSLSQNDLL---------ALFRDHFNDRYNW---FCFRPGKSSFFYSYKHQR 56
K+V+R LPP+L + + H DRY + F +P +K
Sbjct: 66 KLVLRQLPPNLMEEQFFDTVSAAVGSDFLQQHVEDRYFFKGHFSRKP--------FKLPT 117
Query: 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS-QRVPKPFSR-----KD 110
YSRAY+ + + FA+ ++ FV++ V +P +++ S+ KD
Sbjct: 118 YSRAYMTFNEAEKLQFFAKSVSAVTFVDDTNNSMVPTVTLSPYLKKLRTEESKGLRKTKD 177
Query: 111 SREGTIFKDPDYLEFLKVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
EGTI +D + FLK + +L Q E + A+LS V+ PL + +R+K
Sbjct: 178 LIEGTIEQDRTFQTFLKSL-----DLLENHKQ-EYQYADLS-------VIMPLEKALRRK 224
Query: 171 RAAES 175
E+
Sbjct: 225 LEEEA 229
>gi|241950067|ref|XP_002417756.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223641094|emb|CAX45469.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 472
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQ--------RYSRA 60
K VIR LPPSL+++D L ++ + C F+Y H YSRA
Sbjct: 64 KFVIRLLPPSLTESDFLNQLATYYPYHASKIC------QFYYIQGHYPKTNFEIPIYSRA 117
Query: 61 YVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIV 94
Y+ EF L F +E F +I+
Sbjct: 118 YINFSNYNDSLEFLNFLKDKSFEDE----FDSII 147
>gi|353236383|emb|CCA68379.1| hypothetical protein PIIN_02244 [Piriformospora indica DSM 11827]
Length = 107
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND---RYNWFCFRPGKSSFFYSYKHQRYSRAYV 62
QR K V+R LPP+L ++ N+ + WF R G +SRAY+
Sbjct: 17 QRIKAVVRKLPPNLPEDVFWKSCLQWVNENTVKDKWF--RQGNLKGARFSAASIFSRAYI 74
Query: 63 ELKKPAGVFEFAELLNGHVFVNEKGAQFKA 92
K P + F++ +GH F +++G F A
Sbjct: 75 AFKTPEELATFSQNYDGHAFRDKQGMHFTA 104
>gi|66801645|ref|XP_629748.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
gi|60463136|gb|EAL61330.1| hypothetical protein DDB_G0292240 [Dictyostelium discoideum AX4]
Length = 358
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 73 FAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYLEFLKVIAKP 132
F E ++ FVN KG + AIVE AP ++ +K++R GTI Y FLK + P
Sbjct: 49 FLEFMDNRPFVNNKGIEELAIVESAPF-KIDTTQVKKNNRMGTIESSGTYQAFLKQLDAP 107
Query: 133 AENLPSAEIQLERKE 147
+++ + + E+ E
Sbjct: 108 TDSVQNFNVPKEQTE 122
>gi|340939282|gb|EGS19904.1| hypothetical protein CTHT_0043970 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 640
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 285 HVPDALLDKQRESSPVKNSASPTVPKQIQRREAGGRLIRKILLNNETRQTQSVTGVQPQQ 344
H PD + + R + PV SP +P + G L+R++ L + + Q +S+ +
Sbjct: 327 HNPDGHISELRATLPVTIFISPNMP-----LDEHGNLVRQLPLAHVSNQAESMAPPSYSE 381
Query: 345 KMQNLNQENGKPLPGPTSSPNGHVTNNDSPIFSFDGNTKRSSDDRFARKVLHGSGAVSEK 404
M + E+ +P+ P +P G ++ +SP+ G+++ S + A V HG+
Sbjct: 382 HMLDQLYEDIEPV--PLHTPTGCLSGINSPL---HGHSRTPSTENLA-AVFHGTAISPAL 435
Query: 405 QEKRTRNKDRPDRVVWTPRRSDVSQANGERLSSSQPTQLLSDSVEVTRGEMKDDMSYGSK 464
R ++ R + S++S A G S+ P S +TR + + GS
Sbjct: 436 LTSRLQSMSLEQRHRNSSWNSNLSAAGGMSRHSTPP-----GSAPLTRHPSAEHHTPGSA 490
Query: 465 T 465
T
Sbjct: 491 T 491
>gi|448081335|ref|XP_004194864.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359376286|emb|CCE86868.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 321
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYS---YKHQRYSRAYV 62
++ K+ +R LP +L+ + + + R N FY Y+ +SRAY+
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQLEKYTDIRSNGGITNEYYVQGFYPKSPYELPSFSRAYL 79
Query: 63 ELKKPAGVFEFAELLNGHVFVNEK-GAQFKAIVEYAPSQRVPKPFSR-KDSREGTIFKDP 120
K A + +F E + FV EK G Q +E A ++P P S+ + I KD
Sbjct: 80 LFKNTALMRQFIEQVKDKPFVEEKTGNQMMPQLEKALYSKMPTPESKLQKPANKPIEKDH 139
Query: 121 DYLEFLKVI--AKPAENLPSAE-IQLERKEAELSGA 153
+ EFL + KP + L +++ I+ +E + +GA
Sbjct: 140 IFKEFLACLEDGKPFDLLETSQRIRTSAREKKKNGA 175
>gi|448085816|ref|XP_004195953.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
gi|359377375|emb|CCE85758.1| Piso0_005385 [Millerozyma farinosa CBS 7064]
Length = 320
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFY--------SYKHQRY 57
++ K+ +R LP +L+ + D+Y + G ++ +Y Y+ +
Sbjct: 20 EKLKLTVRLLPAALTWEQFTSQL-----DKYTDIRSKGGVTNEYYVQGFYPKSPYELPTF 74
Query: 58 SRAYVELKKPAGVFEFAELLNGHVFVNEK-GAQFKAIVEYAPSQRVPKPFSRKDSREGT- 115
SRAY+ K + + EF E + F+ EK G Q +E A ++P P S K S+ G
Sbjct: 75 SRAYLLFKNSSLMREFIEQVKDKPFIEEKTGNQMAPQLEKALYSKMPTPES-KLSKPGNK 133
Query: 116 -IFKDPDYLEFLKVI 129
I KD + EFL +
Sbjct: 134 AIEKDHIFKEFLACL 148
>gi|308484388|ref|XP_003104394.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
gi|308258042|gb|EFP01995.1| hypothetical protein CRE_22805 [Caenorhabditis remanei]
Length = 514
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRY-SRAYVELKK 66
KV++R LP +++ +++ + + F P +++ H Y S V +
Sbjct: 9 VKVMLRRLPKYMTEKEVMEQISPLPEEVVGTY-FYPAN----FAFDHASYASLTLVFSEY 63
Query: 67 PAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKP---FSRKDSREGTIFKDPDYL 123
+ +F +G++FV+ +G A+VE A +Q K +D+R G I D +L
Sbjct: 64 SDSLIDFERRFDGYIFVDSRGNDSSAVVEAAVNQNFSKCDRGRMTEDTRVGAILNDKYFL 123
Query: 124 EFL-KVIAKPAENLPSAEIQLERKEAELSGAPKETLVVTPLMEYVRQK 170
EF K+ + A + + E Q+ + + + TPL++Y K
Sbjct: 124 EFCEKLNLEKAVPIMTLEQQIRKLNQPEDARTQIDRLETPLVKYFIDK 171
>gi|452822479|gb|EME29498.1| hypothetical protein Gasu_31370 [Galdieria sulphuraria]
Length = 342
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 11/148 (7%)
Query: 8 TKVVIRHLPPSLSQNDLLALFRD--HFNDRYNWFCFRPGK-SSFFYSYKHQRYSRAYVEL 64
KV +R+LPPS S++D F H W F PG +S + + AY+
Sbjct: 110 VKVWVRNLPPSYSEDDFHMAFESAGHSFSLVAWCQFYPGCPASRKETLSSAKKGFAYLAF 169
Query: 65 KKPAGVFEFAELLNGHVFVN-EKGAQFKAIVEYAPSQRVPKPFSRKDSREGTIFKDPDYL 123
+ F + +G + G ++ V A +VP F +DS TIF+D D+
Sbjct: 170 QSLEDALGFEKEYSGLKLKDTNNGVEYGIRVFRALFPKVPSKFRCRDSCVATIFEDADFR 229
Query: 124 EFLKVIAKPAENLPSAEIQLERKEAELS 151
F E+L + + E+ E LS
Sbjct: 230 RF-------EESLNGTQDEREQSEGNLS 250
>gi|323348592|gb|EGA82836.1| Upf3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 277
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 35/172 (20%)
Query: 9 KVVIRHLPPSLSQNDLLALFRDHFND-----------RYNWFCFRPGKSSFFYS---YKH 54
K+VIR LPP+L+ ++ A+ RD+ ND +Y+ +CF G YS K+
Sbjct: 48 KLVIRLLPPNLTADEFFAILRDNNNDNGDKQDIQGKLKYSDWCFFEGH----YSSKVXKN 103
Query: 55 QRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPSQRVPKPFSRKD-SRE 113
YSR + + + A + F++ K ++ +P + S+KD +
Sbjct: 104 STYSRCNFLFDNLSDLEKCANFIKTCKFIDNKDNITIPDMKLSPYVKKFTQTSKKDAALV 163
Query: 114 GTIFKDPDYLEFLKVIAKPAEN----------LPSAE------IQLERKEAE 149
GTI +D + F+ + + EN L S E I+LE K AE
Sbjct: 164 GTIEEDEIFKTFMNSMKQLNENDEYSFQDFSVLKSLEKEFSKSIELENKIAE 215
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,187,087,496
Number of Sequences: 23463169
Number of extensions: 351447035
Number of successful extensions: 891812
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 803
Number of HSP's that attempted gapping in prelim test: 888568
Number of HSP's gapped (non-prelim): 2736
length of query: 527
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 380
effective length of database: 8,910,109,524
effective search space: 3385841619120
effective search space used: 3385841619120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 79 (35.0 bits)