Query 009733
Match_columns 527
No_of_seqs 143 out of 230
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uw4_A UPF3X; nonsense mediate 100.0 1.7E-35 5.9E-40 251.7 11.3 90 8-103 2-91 (91)
2 2l08_A Regulator of nonsense t 100.0 1.3E-34 4.5E-39 249.4 8.1 91 5-101 7-97 (97)
3 1x4c_A Splicing factor, argini 97.6 0.00046 1.6E-08 57.2 10.4 81 4-99 12-92 (108)
4 4fxv_A ELAV-like protein 1; RN 97.6 0.00042 1.5E-08 57.4 9.6 80 5-97 17-96 (99)
5 2e5h_A Zinc finger CCHC-type a 97.5 0.00048 1.7E-08 54.9 9.3 82 3-97 12-93 (94)
6 2dgo_A Cytotoxic granule-assoc 97.5 0.00079 2.7E-08 55.9 10.1 86 3-101 11-96 (115)
7 2dnz_A Probable RNA-binding pr 97.4 0.0012 4.2E-08 52.6 10.7 86 3-101 1-86 (95)
8 1x4a_A Splicing factor, argini 97.4 0.0009 3.1E-08 55.2 10.0 81 4-100 19-99 (109)
9 2dgt_A RNA-binding protein 30; 97.4 0.00069 2.4E-08 54.2 9.0 76 3-99 6-81 (92)
10 2cqc_A Arginine/serine-rich sp 97.4 0.00081 2.8E-08 53.5 9.1 82 3-97 11-92 (95)
11 2div_A TRNA selenocysteine ass 97.4 0.0013 4.4E-08 53.0 10.4 92 3-103 5-97 (99)
12 3bs9_A Nucleolysin TIA-1 isofo 97.4 0.0011 3.6E-08 52.0 9.5 81 4-97 3-83 (87)
13 3mdf_A Peptidyl-prolyl CIS-tra 97.4 0.00099 3.4E-08 52.0 9.2 81 4-97 4-84 (85)
14 2dnm_A SRP46 splicing factor; 97.4 0.0018 6.3E-08 52.6 10.9 86 4-102 10-95 (103)
15 2cqi_A Nucleolysin TIAR; RNA r 97.3 0.0013 4.6E-08 53.4 10.0 83 2-99 10-92 (103)
16 1x5t_A Splicing factor 3B subu 97.3 0.0011 3.8E-08 53.0 9.3 82 4-98 2-84 (96)
17 2do4_A Squamous cell carcinoma 97.3 0.0011 3.9E-08 53.6 9.3 81 3-97 13-93 (100)
18 1x5u_A Splicing factor 3B subu 97.3 0.0011 3.7E-08 54.0 9.2 85 3-100 11-95 (105)
19 1x5s_A Cold-inducible RNA-bind 97.3 0.00092 3.1E-08 54.2 8.7 82 4-98 9-90 (102)
20 2ywk_A Putative RNA-binding pr 97.3 0.0014 4.8E-08 52.3 9.7 81 3-97 12-92 (95)
21 2x1f_A MRNA 3'-END-processing 97.3 0.0013 4.4E-08 53.1 9.5 83 6-101 1-83 (96)
22 1x5o_A RNA binding motif, sing 97.3 0.0013 4.6E-08 54.4 9.7 86 4-98 22-110 (114)
23 2fy1_A RNA-binding motif prote 97.3 0.0028 9.4E-08 53.6 11.8 87 1-101 1-87 (116)
24 2cq3_A RNA-binding protein 9; 97.3 0.0032 1.1E-07 51.2 11.7 85 4-103 12-96 (103)
25 1x4e_A RNA binding motif, sing 97.3 0.0005 1.7E-08 54.0 6.6 74 3-84 1-74 (85)
26 2dnp_A RNA-binding protein 14; 97.3 0.0011 3.8E-08 52.8 8.7 77 3-100 5-81 (90)
27 2dnh_A Bruno-like 5, RNA bindi 97.3 0.0015 5.3E-08 53.1 9.7 86 4-100 12-97 (105)
28 2cq0_A Eukaryotic translation 97.3 0.0025 8.4E-08 51.9 10.7 85 3-100 11-95 (103)
29 2cpd_A Apobec-1 stimulating pr 97.2 0.0033 1.1E-07 50.9 11.1 76 4-98 12-87 (99)
30 2cqb_A Peptidyl-prolyl CIS-tra 97.2 0.0025 8.4E-08 51.6 10.4 85 4-101 9-93 (102)
31 2d9p_A Polyadenylate-binding p 97.2 0.0023 7.8E-08 52.1 10.2 84 3-101 11-94 (103)
32 2dgu_A Heterogeneous nuclear r 97.2 0.002 6.9E-08 52.7 9.8 77 4-101 8-84 (103)
33 1h2v_Z 20 kDa nuclear CAP bind 97.2 0.0022 7.5E-08 56.2 10.7 82 4-98 36-117 (156)
34 3ulh_A THO complex subunit 4; 97.2 0.002 6.8E-08 52.6 9.7 81 4-98 26-106 (107)
35 1whw_A Hypothetical protein ri 97.2 0.0024 8.2E-08 51.4 10.1 87 3-102 4-90 (99)
36 2dgp_A Bruno-like 4, RNA bindi 97.2 0.0015 5.1E-08 53.3 8.9 87 3-99 9-95 (106)
37 2cph_A RNA binding motif prote 97.2 0.0018 6.1E-08 52.8 9.2 84 4-100 12-97 (107)
38 2cpj_A Non-POU domain-containi 97.2 0.0019 6.3E-08 52.4 9.2 79 3-100 11-89 (99)
39 3md1_A Nuclear and cytoplasmic 97.2 0.0027 9.1E-08 49.3 9.6 77 8-97 2-78 (83)
40 2cqd_A RNA-binding region cont 97.2 0.0028 9.4E-08 52.8 10.1 89 3-105 13-101 (116)
41 3ex7_B RNA-binding protein 8A; 97.1 0.0018 6.3E-08 54.5 9.0 88 4-104 19-106 (126)
42 2la6_A RNA-binding protein FUS 97.1 0.0028 9.5E-08 51.3 9.5 82 3-97 9-98 (99)
43 2cpz_A CUG triplet repeat RNA- 97.1 0.0021 7.3E-08 53.4 9.0 82 4-98 22-103 (115)
44 2do0_A HnRNP M, heterogeneous 97.1 0.0038 1.3E-07 51.5 10.4 83 3-99 11-93 (114)
45 2dng_A Eukaryotic translation 97.1 0.0028 9.6E-08 51.7 9.5 82 3-99 11-92 (103)
46 1oo0_B CG8781-PA, drosophila Y 97.1 0.0035 1.2E-07 51.5 9.9 81 5-98 24-104 (110)
47 1b7f_A Protein (SXL-lethal pro 97.1 0.0029 1E-07 54.1 9.7 83 4-97 86-168 (168)
48 3lqv_A PRE-mRNA branch site pr 97.1 0.0027 9.3E-08 52.6 9.1 80 3-98 4-83 (115)
49 1p27_B RNA-binding protein 8A; 97.1 0.0028 9.7E-08 51.6 9.1 81 5-98 21-101 (106)
50 2kt5_A RNA and export factor-b 97.0 0.004 1.4E-07 52.5 10.1 87 4-104 32-118 (124)
51 4f25_A Polyadenylate-binding p 97.0 0.002 6.7E-08 54.2 8.2 80 4-98 2-81 (115)
52 2khc_A Testis-specific RNP-typ 97.0 0.0026 8.9E-08 52.9 8.7 81 4-97 37-117 (118)
53 2lkz_A RNA-binding protein 5; 97.0 0.0036 1.2E-07 52.0 9.5 84 4-97 6-92 (95)
54 2cpe_A RNA-binding protein EWS 97.0 0.004 1.4E-07 51.4 9.6 82 4-98 12-101 (113)
55 1fxl_A Paraneoplastic encephal 97.0 0.0037 1.2E-07 53.2 9.6 82 5-97 86-167 (167)
56 2fc8_A NCL protein; structure 97.0 0.0026 8.9E-08 51.5 8.3 79 4-98 12-90 (102)
57 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.0 0.0035 1.2E-07 53.1 9.3 81 4-97 60-140 (140)
58 2e44_A Insulin-like growth fac 97.0 0.0036 1.2E-07 50.1 8.9 80 4-99 12-91 (96)
59 3nmr_A Cugbp ELAV-like family 97.0 0.003 1E-07 54.3 9.0 82 5-97 93-174 (175)
60 2dh8_A DAZ-associated protein 97.0 0.0024 8.1E-08 52.1 7.9 82 3-98 12-93 (105)
61 2cqp_A RNA-binding protein 12; 97.0 0.0051 1.7E-07 49.4 9.7 81 4-98 12-93 (98)
62 2jrs_A RNA-binding protein 39; 97.0 0.0023 7.7E-08 53.5 7.9 83 2-97 21-103 (108)
63 1why_A Hypothetical protein ri 96.9 0.0024 8.3E-08 51.5 7.6 78 4-98 14-91 (97)
64 2dnq_A RNA-binding protein 4B; 96.9 0.0029 1E-07 50.3 7.9 77 3-100 4-80 (90)
65 1fxl_A Paraneoplastic encephal 96.9 0.0032 1.1E-07 53.5 8.6 81 6-99 1-81 (167)
66 2jvo_A Nucleolar protein 3; nu 96.9 0.0039 1.3E-07 52.2 9.0 74 3-97 27-100 (108)
67 2lxi_A RNA-binding protein 10; 96.9 0.0033 1.1E-07 51.0 8.1 80 8-98 2-81 (91)
68 1x4g_A Nucleolysin TIAR; struc 96.9 0.0059 2E-07 50.4 9.7 79 4-101 22-100 (109)
69 1wi8_A EIF-4B, eukaryotic tran 96.9 0.0055 1.9E-07 50.0 9.4 81 4-98 12-92 (104)
70 1b7f_A Protein (SXL-lethal pro 96.9 0.0053 1.8E-07 52.5 9.7 84 5-101 1-84 (168)
71 2dgv_A HnRNP M, heterogeneous 96.9 0.0051 1.7E-07 48.7 8.8 83 3-100 4-86 (92)
72 1x4h_A RNA-binding protein 28; 96.9 0.0036 1.2E-07 51.2 8.2 83 3-98 11-99 (111)
73 2dgs_A DAZ-associated protein 96.9 0.0049 1.7E-07 49.7 8.8 83 3-99 6-88 (99)
74 2kxn_B Transformer-2 protein h 96.9 0.0028 9.6E-08 54.9 7.8 82 3-97 42-123 (129)
75 2err_A Ataxin-2-binding protei 96.8 0.0072 2.5E-07 50.3 9.9 80 3-97 25-104 (109)
76 1u6f_A Tcubp1, RNA-binding pro 96.8 0.0034 1.2E-07 53.6 8.1 83 4-99 39-121 (139)
77 1whx_A Hypothetical protein ri 96.8 0.0056 1.9E-07 51.4 9.2 78 6-102 9-86 (111)
78 3s8s_A Histone-lysine N-methyl 96.8 0.0085 2.9E-07 50.6 10.4 83 4-99 3-85 (110)
79 3nmr_A Cugbp ELAV-like family 96.8 0.0033 1.1E-07 54.0 7.9 76 6-87 2-77 (175)
80 2cpx_A Hypothetical protein FL 96.8 0.0039 1.3E-07 51.5 7.9 83 4-101 22-106 (115)
81 4a8x_A RNA-binding protein wit 96.8 0.0024 8.2E-08 50.0 6.3 80 6-97 3-82 (88)
82 1p1t_A Cleavage stimulation fa 96.8 0.0033 1.1E-07 50.9 7.3 81 6-99 7-87 (104)
83 1wg1_A KIAA1579 protein, homol 96.8 0.0047 1.6E-07 49.2 8.1 78 5-102 3-80 (88)
84 2fc9_A NCL protein; structure 96.8 0.0054 1.9E-07 49.6 8.5 80 4-100 12-91 (101)
85 2ytc_A PRE-mRNA-splicing facto 96.8 0.0039 1.3E-07 48.7 7.4 75 4-97 9-84 (85)
86 2cpf_A RNA binding motif prote 96.7 0.0032 1.1E-07 50.6 6.8 88 4-101 2-89 (98)
87 2dhg_A TRNA selenocysteine ass 96.7 0.0051 1.7E-07 49.9 8.1 82 3-97 5-87 (104)
88 2dgw_A Probable RNA-binding pr 96.7 0.0054 1.8E-07 48.8 8.0 79 3-97 6-84 (91)
89 3md3_A Nuclear and cytoplasmic 96.7 0.011 3.6E-07 50.2 10.3 81 4-97 84-164 (166)
90 1rk8_A CG8781-PA, CG8781-PA pr 96.7 0.0095 3.3E-07 52.9 10.3 82 5-99 70-151 (165)
91 3beg_B Splicing factor, argini 96.7 0.0042 1.4E-07 52.3 7.5 79 5-98 14-92 (115)
92 1nu4_A U1A RNA binding domain; 96.7 0.0033 1.1E-07 50.3 6.5 81 3-99 4-88 (97)
93 2ek1_A RNA-binding protein 12; 96.7 0.0063 2.1E-07 48.5 8.0 80 4-97 12-92 (95)
94 2xnq_A Nuclear polyadenylated 96.7 0.011 3.7E-07 48.4 9.6 74 3-97 18-92 (97)
95 2la4_A Nuclear and cytoplasmic 96.7 0.0069 2.4E-07 49.0 8.2 66 4-83 24-89 (101)
96 2hvz_A Splicing factor, argini 96.6 0.0043 1.5E-07 50.3 6.9 76 8-101 1-76 (101)
97 2kn4_A Immunoglobulin G-bindin 96.6 0.01 3.6E-07 51.6 9.8 86 4-102 67-152 (158)
98 1wf1_A RNA-binding protein RAL 96.6 0.016 5.3E-07 47.9 10.3 76 5-101 25-101 (110)
99 2g4b_A Splicing factor U2AF 65 96.6 0.014 4.9E-07 50.2 10.5 80 5-97 92-171 (172)
100 3ucg_A Polyadenylate-binding p 96.6 0.0088 3E-07 46.9 8.4 77 7-97 6-82 (89)
101 1fjc_A Nucleolin RBD2, protein 96.6 0.0047 1.6E-07 49.4 6.7 77 3-97 12-88 (96)
102 2cq4_A RNA binding motif prote 96.6 0.014 5E-07 48.2 9.7 77 7-97 25-101 (114)
103 2dgx_A KIAA0430 protein; RRM d 96.5 0.016 5.6E-07 46.8 9.8 79 4-98 6-88 (96)
104 2kvi_A Nuclear polyadenylated 96.5 0.0087 3E-07 48.4 8.0 80 3-103 6-86 (96)
105 2yh0_A Splicing factor U2AF 65 96.5 0.018 6.1E-07 50.7 10.5 80 5-97 112-191 (198)
106 2cpi_A CCR4-NOT transcription 96.5 0.0088 3E-07 49.8 8.1 85 4-98 12-99 (111)
107 3md3_A Nuclear and cytoplasmic 96.5 0.016 5.5E-07 49.1 9.8 78 9-100 2-79 (166)
108 2f3j_A RNA and export factor b 96.5 0.0083 2.8E-07 54.8 8.5 85 4-102 85-169 (177)
109 2e5j_A Methenyltetrahydrofolat 96.5 0.0083 2.8E-07 48.4 7.5 76 4-97 16-91 (97)
110 2jvr_A Nucleolar protein 3; RN 96.5 0.0061 2.1E-07 52.3 7.0 81 2-98 23-103 (111)
111 2mss_A Protein (musashi1); RNA 96.5 0.0055 1.9E-07 46.9 6.1 67 9-84 1-67 (75)
112 2lea_A Serine/arginine-rich sp 96.4 0.0069 2.4E-07 52.7 7.3 88 4-104 44-131 (135)
113 2cpy_A RNA-binding protein 12; 96.4 0.0073 2.5E-07 50.5 7.2 80 4-98 12-92 (114)
114 3s7r_A Heterogeneous nuclear r 96.4 0.014 4.7E-07 45.8 8.4 71 3-82 7-77 (87)
115 3egn_A RNA-binding protein 40; 96.4 0.012 3.9E-07 50.8 8.6 79 4-99 42-129 (143)
116 3p5t_L Cleavage and polyadenyl 96.4 0.0061 2.1E-07 48.7 6.2 72 7-84 1-72 (90)
117 2cqh_A IGF-II mRNA-binding pro 96.4 0.012 4.3E-07 46.8 7.9 77 3-98 4-81 (93)
118 2qfj_A FBP-interacting repress 96.4 0.025 8.6E-07 50.4 10.8 85 6-103 124-208 (216)
119 2qfj_A FBP-interacting repress 96.3 0.011 3.6E-07 52.8 8.2 71 6-84 27-97 (216)
120 2a3j_A U1 small nuclear ribonu 96.3 0.0092 3.1E-07 52.2 7.4 80 5-98 27-108 (127)
121 1x4b_A Heterogeneous nuclear r 96.3 0.015 5.3E-07 48.2 8.4 79 6-98 26-104 (116)
122 2dis_A Unnamed protein product 96.3 0.023 7.9E-07 46.4 9.2 89 4-103 5-95 (109)
123 2adc_A Polypyrimidine tract-bi 96.3 0.024 8E-07 52.5 10.3 81 4-102 31-112 (229)
124 2e5g_A U6 snRNA-specific termi 96.2 0.019 6.5E-07 46.0 8.2 76 4-98 5-80 (94)
125 1wex_A Hypothetical protein (r 96.2 0.029 9.9E-07 47.2 9.6 82 4-103 12-94 (104)
126 2i2y_A Fusion protein consists 96.2 0.014 4.7E-07 50.7 7.8 77 4-98 70-146 (150)
127 2cqg_A TDP-43, TAR DNA-binding 96.1 0.063 2.1E-06 43.4 11.0 84 3-101 11-94 (103)
128 1uaw_A Mouse-musashi-1; RNP-ty 96.1 0.013 4.6E-07 44.7 6.5 66 8-82 1-66 (77)
129 1fje_B Nucleolin RBD12, protei 96.1 0.017 6E-07 50.0 7.9 76 4-97 96-171 (175)
130 2j76_E EIF-4B, EIF4B, eukaryot 96.0 0.012 4E-07 48.1 6.0 71 4-84 16-87 (100)
131 1qm9_A Polypyrimidine tract-bi 96.0 0.042 1.4E-06 48.8 10.1 78 6-101 2-80 (198)
132 3pgw_S U1-70K; protein-RNA com 95.9 0.023 7.9E-07 59.1 9.5 82 6-100 101-182 (437)
133 1l3k_A Heterogeneous nuclear r 95.9 0.025 8.4E-07 49.7 8.4 82 3-98 9-90 (196)
134 3pgw_A U1-A; protein-RNA compl 95.9 0.029 1E-06 52.7 9.4 75 6-97 206-280 (282)
135 2hzc_A Splicing factor U2AF 65 95.9 0.016 5.4E-07 45.3 6.3 68 4-84 3-79 (87)
136 3r27_A HnRNP L, heterogeneous 95.9 0.041 1.4E-06 47.0 9.3 81 4-102 18-99 (100)
137 2ki2_A SS-DNA binding protein 95.8 0.013 4.4E-07 46.3 5.6 79 8-100 2-80 (90)
138 2cq1_A PTB-like protein L; RRM 95.8 0.058 2E-06 45.3 9.8 82 4-104 12-95 (101)
139 1sjq_A Polypyrimidine tract-bi 95.8 0.032 1.1E-06 48.0 8.1 83 3-104 12-96 (105)
140 3pgw_A U1-A; protein-RNA compl 95.8 0.038 1.3E-06 51.9 9.4 81 3-97 5-87 (282)
141 2cq2_A Hypothetical protein LO 95.7 0.043 1.5E-06 47.8 9.0 84 5-104 23-108 (114)
142 1wel_A RNA-binding protein 12; 95.7 0.029 1E-06 47.4 7.7 77 4-97 22-101 (124)
143 2jwn_A Embryonic polyadenylate 95.7 0.02 6.9E-07 47.9 6.7 78 7-98 36-113 (124)
144 3n9u_C Cleavage and polyadenyl 95.7 0.033 1.1E-06 49.9 8.4 81 6-97 54-134 (156)
145 1iqt_A AUF1, heterogeneous nuc 95.6 0.018 6E-07 43.9 5.4 66 9-83 1-66 (75)
146 2ad9_A Polypyrimidine tract-bi 95.6 0.031 1.1E-06 48.9 7.4 81 4-103 28-110 (119)
147 4f02_A Polyadenylate-binding p 95.5 0.046 1.6E-06 50.0 8.8 72 4-83 12-83 (213)
148 1s79_A Lupus LA protein; RRM, 95.5 0.03 1E-06 46.8 6.9 72 3-84 7-78 (103)
149 2db1_A Heterogeneous nuclear r 95.5 0.023 7.8E-07 48.1 6.2 71 4-82 14-85 (118)
150 2dnn_A RNA-binding protein 12; 95.5 0.021 7.3E-07 48.5 6.0 66 6-82 15-80 (109)
151 3q2s_C Cleavage and polyadenyl 95.5 0.028 9.7E-07 53.2 7.4 81 6-97 67-147 (229)
152 2nlw_A Eukaryotic translation 95.5 0.047 1.6E-06 44.9 7.8 77 7-97 15-97 (105)
153 1wez_A HnRNP H', FTP-3, hetero 95.5 0.03 1E-06 46.4 6.6 70 3-83 11-80 (102)
154 1qm9_A Polypyrimidine tract-bi 95.4 0.04 1.4E-06 49.0 7.8 75 6-97 119-194 (198)
155 2cjk_A Nuclear polyadenylated 95.4 0.029 9.9E-07 48.0 6.7 63 6-76 2-64 (167)
156 2adc_A Polypyrimidine tract-bi 95.4 0.057 1.9E-06 49.9 9.0 75 6-97 150-225 (229)
157 3zzy_A Polypyrimidine tract-bi 95.3 0.053 1.8E-06 48.3 8.1 86 3-103 24-109 (130)
158 1fj7_A Nucleolin RBD1, protein 95.3 0.01 3.4E-07 48.1 3.0 80 4-98 14-93 (101)
159 2xs2_A Deleted in azoospermia- 95.2 0.025 8.4E-07 45.8 5.3 67 5-82 7-73 (102)
160 2dnl_A Cytoplasmic polyadenyla 95.2 0.063 2.1E-06 44.8 7.9 76 4-85 5-83 (114)
161 3sde_A Paraspeckle component 1 95.2 0.052 1.8E-06 51.3 8.3 76 4-98 19-94 (261)
162 2rs2_A Musashi-1, RNA-binding 95.2 0.043 1.5E-06 45.7 6.9 82 3-98 21-102 (109)
163 2ghp_A U4/U6 snRNA-associated 95.1 0.049 1.7E-06 51.5 7.8 81 4-97 207-288 (292)
164 1l3k_A Heterogeneous nuclear r 95.1 0.07 2.4E-06 46.8 8.2 81 6-100 103-183 (196)
165 1wg5_A Heterogeneous nuclear r 95.1 0.061 2.1E-06 44.1 7.4 69 4-82 12-81 (104)
166 2krb_A Eukaryotic translation 95.1 0.04 1.4E-06 43.0 5.9 67 8-84 2-74 (81)
167 1x4d_A Matrin 3; structural ge 95.0 0.039 1.3E-06 46.8 6.1 77 4-98 12-90 (102)
168 2m2b_A RNA-binding protein 10; 95.0 0.044 1.5E-06 46.8 6.5 80 4-97 20-105 (131)
169 3smz_A Protein raver-1, ribonu 94.9 0.14 4.8E-06 48.1 10.2 80 5-98 182-262 (284)
170 2lmi_A GRSF-1, G-rich sequence 94.9 0.036 1.2E-06 45.8 5.5 72 3-82 7-79 (107)
171 1sjr_A Polypyrimidine tract-bi 94.8 0.078 2.7E-06 49.1 8.1 84 3-101 42-125 (164)
172 3smz_A Protein raver-1, ribonu 94.8 0.11 3.9E-06 48.7 9.3 85 5-102 93-177 (284)
173 1fje_B Nucleolin RBD12, protei 94.7 0.03 1E-06 48.5 4.9 81 3-100 9-91 (175)
174 3tyt_A Heterogeneous nuclear r 94.6 0.11 3.7E-06 48.2 8.6 81 6-97 122-204 (205)
175 2ghp_A U4/U6 snRNA-associated 94.6 0.068 2.3E-06 50.5 7.3 82 3-100 37-118 (292)
176 3ns6_A Eukaryotic translation 94.6 0.035 1.2E-06 45.4 4.7 72 5-84 4-81 (100)
177 2hgl_A HNRPF protein, heteroge 94.5 0.062 2.1E-06 47.5 6.4 71 4-82 41-112 (136)
178 1x5p_A Negative elongation fac 94.4 0.23 7.7E-06 39.9 9.0 76 3-99 11-86 (97)
179 2cjk_A Nuclear polyadenylated 94.4 0.09 3.1E-06 44.9 7.0 77 7-97 87-163 (167)
180 2g4b_A Splicing factor U2AF 65 94.1 0.093 3.2E-06 45.0 6.3 75 6-98 3-86 (172)
181 2e5i_A Heterogeneous nuclear r 94.0 0.21 7.3E-06 43.8 8.7 81 4-101 22-103 (124)
182 3sde_A Paraspeckle component 1 94.0 0.19 6.4E-06 47.4 8.9 85 5-99 94-178 (261)
183 3d2w_A TAR DNA-binding protein 94.0 0.27 9.2E-06 39.6 8.6 75 3-97 7-81 (89)
184 2lcw_A RNA-binding protein FUS 93.0 0.01 3.5E-07 49.4 0.0 82 4-98 4-93 (116)
185 4f02_A Polyadenylate-binding p 93.8 0.17 5.7E-06 46.2 7.9 76 7-97 103-178 (213)
186 1x4f_A Matrin 3; structural ge 93.7 0.084 2.9E-06 45.7 5.4 76 4-98 22-100 (112)
187 2yh0_A Splicing factor U2AF 65 93.4 0.11 3.8E-06 45.6 5.8 74 6-97 3-85 (198)
188 1owx_A Lupus LA protein, SS-B, 93.4 0.19 6.5E-06 44.5 7.2 60 5-78 16-77 (121)
189 3tyt_A Heterogeneous nuclear r 93.3 0.48 1.6E-05 43.8 10.1 79 6-102 3-82 (205)
190 2dha_A FLJ20171 protein; RRM d 93.3 0.11 3.6E-06 45.3 5.3 70 5-82 21-92 (123)
191 2hgm_A HNRPF protein, heteroge 93.0 0.13 4.6E-06 45.0 5.6 68 4-82 39-108 (126)
192 2hgn_A Heterogeneous nuclear r 92.0 0.078 2.7E-06 47.1 2.9 69 4-83 43-111 (139)
193 1wf0_A TDP-43, TAR DNA-binding 91.9 0.28 9.7E-06 38.5 5.8 74 5-98 3-76 (88)
194 2wbr_A GW182, gawky, LD47780P; 91.5 0.33 1.1E-05 41.2 6.0 65 6-84 6-70 (89)
195 2bz2_A Negative elongation fac 91.4 0.83 2.8E-05 39.0 8.6 77 3-100 35-111 (121)
196 3tht_A Alkylated DNA repair pr 91.2 0.72 2.5E-05 47.1 9.3 80 4-97 15-96 (345)
197 2dit_A HIV TAT specific factor 88.3 2.6 8.9E-05 34.9 8.9 78 3-97 11-99 (112)
198 3u1l_A PRE-mRNA-splicing facto 88.2 0.55 1.9E-05 45.7 5.4 82 5-100 132-229 (240)
199 2voo_A Lupus LA protein; RNA-b 86.3 2 6.7E-05 39.5 7.7 63 7-78 109-171 (193)
200 3v4m_A Splicing factor U2AF 65 85.7 2.1 7E-05 35.8 7.0 85 6-99 4-96 (105)
201 2diu_A KIAA0430 protein; struc 84.1 2.6 9E-05 36.2 6.9 71 10-101 12-85 (96)
202 2pe8_A Splicing factor 45; RRM 83.8 9.9 0.00034 31.7 10.3 84 4-99 5-93 (105)
203 2j8a_A Histone-lysine N-methyl 71.7 12 0.0004 34.2 7.6 60 8-75 3-74 (136)
204 2dhx_A Poly (ADP-ribose) polym 68.8 11 0.00037 33.0 6.5 65 5-84 6-73 (104)
205 3ue2_A Poly(U)-binding-splicin 67.2 16 0.00054 31.3 7.2 38 57-99 71-108 (118)
206 2xb2_G Regulator of nonsense t 48.0 7.5 0.00026 31.1 1.7 24 405-428 4-28 (60)
207 1jmt_A Splicing factor U2AF 35 46.9 16 0.00055 30.2 3.7 37 57-98 68-104 (104)
208 3s6e_A RNA-binding protein 39; 44.2 85 0.0029 26.6 7.9 80 4-98 4-91 (114)
209 1wey_A Calcipressin 1; structu 28.7 41 0.0014 29.3 3.4 70 7-90 5-79 (104)
210 2d9o_A DNAJ (HSP40) homolog, s 25.2 2E+02 0.0068 23.7 6.9 62 17-98 27-88 (100)
211 2yh9_A Small protein A, BAME p 23.4 1.4E+02 0.0048 24.1 5.5 52 11-66 9-64 (88)
No 1
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=100.00 E-value=1.7e-35 Score=251.71 Aligned_cols=90 Identities=34% Similarity=0.649 Sum_probs=86.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCC
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 87 (527)
+|||||||||+|||++|+++|++++ .++|++|++|+++ .++++||||||+|++.|+|.+|.+.|+|++|+|++|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s----~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTS----LYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCS----STTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 7999999999999999999999987 5899999999999 789999999999999999999999999999999999
Q ss_pred CeeeeEEEeccCCCCC
Q 009733 88 AQFKAIVEYAPSQRVP 103 (527)
Q Consensus 88 ne~~A~VEfAPYQKvP 103 (527)
++++|+||||||||||
T Consensus 76 ~~~~a~VE~AP~qkvP 91 (91)
T 1uw4_A 76 QEYPAIVEFAPFQKAA 91 (91)
T ss_dssp CEEECEEEECSSCCC-
T ss_pred CEeeeEEEEcCCCcCc
Confidence 9999999999999998
No 2
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=249.42 Aligned_cols=91 Identities=33% Similarity=0.621 Sum_probs=87.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
-..+|||||||||+|||++|+++|+++|. ++|+||++|+++ .++++||||||+|++.|+|.+|.+.|+|++|+|
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s----~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLS----LYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSS----SCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccC----CCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35689999999999999999999999875 699999999999 799999999999999999999999999999999
Q ss_pred CCCCeeeeEEEeccCCC
Q 009733 85 EKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 85 sKGne~~A~VEfAPYQK 101 (527)
++|++++|+||||||||
T Consensus 81 ~kg~~~~a~VE~APyqK 97 (97)
T 2l08_A 81 SKGLEYPAVVEFAPFQK 97 (97)
T ss_dssp TTCCEEEEEEEECCCCC
T ss_pred CCCCEeeeEEEecCCCC
Confidence 99999999999999997
No 3
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.59 E-value=0.00046 Score=57.22 Aligned_cols=81 Identities=20% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+...++|.|.+||+.+||+++.+.+..+ +.|.....+. . .-|||.|.+.+++...++.++|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~i~~---------~----g~afV~f~~~~~a~~Ai~~l~g~~~~ 76 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYR---------D----GTGVVEFVRKEDMTYAVRKLDNTKFR 76 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEET---------T----TEEEEEESSHHHHHHHHHHSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEec---------C----CEEEEEECCHHHHHHHHHHHCcCCcc
Confidence 4567899999999999999999999875 3454443321 1 57999999999999999999999998
Q ss_pred cCCCCeeeeEEEeccC
Q 009733 84 NEKGAQFKAIVEYAPS 99 (527)
Q Consensus 84 DsKGne~~A~VEfAPY 99 (527)
+..+......|++|--
T Consensus 77 g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 77 SHEGETAYIRVKVDGP 92 (108)
T ss_dssp CTTSCEEEEEEEESSC
T ss_pred CCcCcceEEEEEeCCC
Confidence 8777677888998854
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.55 E-value=0.00042 Score=57.38 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.++++|.|++||+.+||+++.+.+... |.|.....+.-+.. ...-.-|||.|.+.+++....+.++|..|-+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~t------g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 88 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSI--GEVESAKLIRDKVA------GHSLGYGFVNYVTAKDAERAINTLNGLRLQS 88 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSS------CCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEeEeeecCCC------CcccccEEEEECCHHHHHHHHHHhCCCEECC
Confidence 357899999999999999999999874 45655555432221 1112359999999999999999999998843
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
..-.|+||
T Consensus 89 -----r~l~V~~A 96 (99)
T 4fxv_A 89 -----KTIKVSYA 96 (99)
T ss_dssp -----EECEEEEC
T ss_pred -----EEEEEEEe
Confidence 34677877
No 5
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00048 Score=54.90 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|........+.. .....-|||.|.+.+++....+.++|+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKY--GKVVKVTIMKDKDT------RKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTT--SCEEEEEECCCSSS------CCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCC------CCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 35678899999999999999999999875 34655555433222 11123599999999999999999999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|+||
T Consensus 84 ~g-----~~l~v~~a 93 (94)
T 2e5h_A 84 FG-----RVIKASIA 93 (94)
T ss_dssp TT-----EEEEEEEC
T ss_pred CC-----cEEEEEec
Confidence 43 34566665
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.46 E-value=0.00079 Score=55.86 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=64.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++.++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPF--GRISDARVVKDMAT------GKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCC------CCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56788999999999999999999999865 34555555432211 12234799999999999999999999887
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
.+ ....|+||--..
T Consensus 83 ~g-----~~l~V~~a~~~~ 96 (115)
T 2dgo_A 83 GG-----RQIRTNWATRKP 96 (115)
T ss_dssp TT-----EECEEEESSCCC
T ss_pred CC-----EEEEEEEccCCC
Confidence 43 357788886544
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0012 Score=52.62 Aligned_cols=86 Identities=9% Similarity=0.117 Sum_probs=64.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++.+..+|.|.+||+.+||+++.+.+..+ +.|........+.. .....-|||.|.+.+++....+.++|+.|
T Consensus 1 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 1 GSSGSSGLYVGSLHFNITEDMLRGIFEPF--GKIDNIVLMKDSDT------GRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEECCSSS------CCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEeecCCC------CceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 35678899999999999999999999875 34555555433222 11234799999999999999999999888
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
.+ ....|++|.-+.
T Consensus 73 ~g-----~~l~V~~a~~~~ 86 (95)
T 2dnz_A 73 AG-----RPMRVGHVTERL 86 (95)
T ss_dssp SS-----SCCEEEESSCCC
T ss_pred CC-----cEEEEEEccccc
Confidence 43 346788875443
No 8
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.0009 Score=55.16 Aligned_cols=81 Identities=16% Similarity=0.260 Sum_probs=61.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|.+||+.+||+++++.+..+ +.|....+..... ...-|||.|.+.+++...++.++++.|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY--GAIRDIDLKNRRG---------GPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEECCSSS---------SSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCC---------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5567899999999999999999999875 3455444432111 1346999999999999999999999873
Q ss_pred cCCCCeeeeEEEeccCC
Q 009733 84 NEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQ 100 (527)
+ ....|+||--.
T Consensus 88 g-----~~l~V~~a~~~ 99 (109)
T 1x4a_A 88 G-----YRLRVEFPRSG 99 (109)
T ss_dssp T-----EECEEECCCCC
T ss_pred C-----eEEEEEEcccC
Confidence 2 35678887443
No 9
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00069 Score=54.23 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=60.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.| -|||.|.+.+++....+.++|+.|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~v~~~~~--------------~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEY--GPVIECDIVKD--------------YAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTT--SCCCEEEECSS--------------EEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEECC--------------EEEEEECCHHHHHHHHHHhCCCee
Confidence 35678899999999999999999999875 34555444322 799999999999999999999998
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
.+ ....|+||--
T Consensus 70 ~g-----~~l~V~~a~~ 81 (92)
T 2dgt_A 70 QG-----KRMHVQLSTS 81 (92)
T ss_dssp TT-----EEEEEEESSC
T ss_pred CC-----cEEEEEEccC
Confidence 42 4567888843
No 10
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.00081 Score=53.55 Aligned_cols=82 Identities=16% Similarity=0.065 Sum_probs=60.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+|++++.+.+..+ +.|....++..+.. .....-|||.|.+.+++....+.++|+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQS------RRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTT--SCEEEEEEEECSSS------SSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCC------CCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46678899999999999999999999875 34555454432221 12234699999999999999999999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|+||
T Consensus 83 ~g-----~~l~v~~a 92 (95)
T 2cqc_A 83 DG-----RRIRVSGP 92 (95)
T ss_dssp TT-----EEEEEECC
T ss_pred CC-----EEEEEEec
Confidence 32 34566665
No 11
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.40 E-value=0.0013 Score=53.02 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=66.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCce-eEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN-WFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvd-w~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
...+..+|.|.+||+.+||+++.+.+..+ +.|. ....+..+.. .....-|||.|.+.+++....+.++|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATM--GETVMSVKIIRNRLT------GIPAGYCFVEFADLATAEKCLHKINGKP 76 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHT--TCCCCEEEEEECSSS------CCEEEEEEEECSCHHHHHHHHHTTTTSE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHh--CCcceEEEEeecCCC------CCcCCEEEEEeCCHHHHHHHHHHHcCCc
Confidence 45678899999999999999999998875 2343 3333322221 1123459999999999999999999998
Q ss_pred eEcCCCCeeeeEEEeccCCCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQKvP 103 (527)
|.+... .-.-.|+||-.++.+
T Consensus 77 ~~g~~~-~~~l~v~~a~~~~~~ 97 (99)
T 2div_A 77 LPGATP-AKRFKLNYATYSGPS 97 (99)
T ss_dssp ESSCSS-CEECCEEETTCCSSS
T ss_pred cCCCCc-ceeEEEeecCCCCCC
Confidence 754432 233678998777654
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.39 E-value=0.0011 Score=52.04 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=58.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++....+.++|+.|.
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPF--GRISDARVVKDMAT------GKSKGYGFVSFFNKWDAENAIQQMGGQWLG 74 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3567899999999999999999999875 34555555433222 122346999999999999999999998874
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
+ ....|+||
T Consensus 75 g-----~~l~v~~a 83 (87)
T 3bs9_A 75 G-----RQIRTNWA 83 (87)
T ss_dssp T-----EECEEEEE
T ss_pred C-----eEEEEEec
Confidence 3 34566665
No 13
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.38 E-value=0.00099 Score=51.99 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++..... .....-|||.|.+.+++....+.++|+.|.
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 75 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYET------EKHRGFAFVEFELAEDAAAAIDNMNESELF 75 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCEETTT------TEECSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhcc--CCEEEEEEEECCCC------CccccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4678899999999999999999999875 34544444321111 112346999999999999999999999883
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
| ....|+||
T Consensus 76 ---g--~~l~v~~a 84 (85)
T 3mdf_A 76 ---G--RTIRVNLA 84 (85)
T ss_dssp ---T--EECEEEEC
T ss_pred ---C--cEEEEEEc
Confidence 2 24556654
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.0018 Score=52.63 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.. ...-.-|||.|.+.+++...++.++|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKY--GRVGDVYIPREPHT------KAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCBCSSS------CSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCC------CCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4567899999999999999999999875 34655554433221 112346999999999999999999999874
Q ss_pred cCCCCeeeeEEEeccCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKv 102 (527)
+ ....|++|-..+-
T Consensus 82 g-----~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 82 G-----RELRVQVARYGRR 95 (103)
T ss_dssp T-----BCCEEEECSSCCS
T ss_pred C-----cEEEEEECCcCCC
Confidence 3 3468888865543
No 15
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.0013 Score=53.43 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=62.7
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
....+..+|.|.+||+.+||+++.+.+..+ +.|.....+.-+.. .-.-|||.|.+.+++....+.++++.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQI--GPCKSCKMITEHTS--------NDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEEEECCCCS--------SCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhc--CCEeEEEEEecCCC--------CCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 356678999999999999999999999875 34554444432111 12479999999999999999999998
Q ss_pred eEcCCCCeeeeEEEeccC
Q 009733 82 FVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPY 99 (527)
|. | ....|+||--
T Consensus 80 ~~---g--~~l~V~~a~~ 92 (103)
T 2cqi_A 80 IL---G--KEVKVNWATT 92 (103)
T ss_dssp ET---T--EEEEEEECCC
T ss_pred cC---C--CeEEEEECCC
Confidence 74 2 3567888754
No 16
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=0.0011 Score=52.98 Aligned_cols=82 Identities=15% Similarity=0.135 Sum_probs=60.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeE-EeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWF-CFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~-yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|... ..+..+.. .....-|||.|.+.+++....+.++|+.|
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAF--GVILQTPKIMRDPDT------GNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTT--SCBSSCCEECCCTTT------CSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEEcCCC------CCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4578899999999999999999999875 234333 23221111 11234699999999999999999999997
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
. | ....|+||-
T Consensus 74 ~---g--~~l~v~~a~ 84 (96)
T 1x5t_A 74 C---N--RPITVSYAF 84 (96)
T ss_dssp T---T--EECEEEESC
T ss_pred C---C--EEEEEEEec
Confidence 3 2 356788874
No 17
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.0011 Score=53.58 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+ . .....-|||.|.+.+++....+.++|+.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAH--GTVKDLRLVTNR-A------GKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECT-T------SCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C------CCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35678899999999999999999999875 345555554332 1 11134699999999999999999999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|+||
T Consensus 84 ~g-----~~l~v~~a 93 (100)
T 2do4_A 84 KE-----NIIKVAIS 93 (100)
T ss_dssp SS-----CEEEEEEC
T ss_pred CC-----EEEEEEEC
Confidence 43 34667776
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.0011 Score=54.01 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=63.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.++++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQA--GPVVNTHMPKDRVT------GQHQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSS------CSBCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CcCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 46678999999999999999999999875 34655554432211 11233599999999999999999999887
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|++|--.
T Consensus 83 ~g-----~~l~v~~a~~~ 95 (105)
T 1x5u_A 83 YG-----KPIRVNKASAH 95 (105)
T ss_dssp SS-----CBCEEEETTTT
T ss_pred CC-----eEEEEEECCCC
Confidence 43 34678887443
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.00092 Score=54.19 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=60.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++.++++.|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY--GQISEVVVVKDRET------QRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH--SCCCEEEECCCSSS------CSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCC------CCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4577899999999999999999999875 34544444432211 112346999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||-
T Consensus 81 g-----~~l~v~~a~ 90 (102)
T 1x5s_A 81 G-----RQIRVDQAG 90 (102)
T ss_dssp S-----CCCEEEEEE
T ss_pred C-----eEEEEEECC
Confidence 3 346777774
No 20
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.32 E-value=0.0014 Score=52.28 Aligned_cols=81 Identities=19% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|........+ . .....-|||.|.+.+++....+.++|+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~--G~i~~v~i~~~~------~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQA--GPLTKVTICKDR------E-GKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT------T-SCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEECC------C-CCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35677899999999999999999999875 345554444321 1 11234699999999999999999999987
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|+||
T Consensus 83 ~g-----~~l~V~~a 92 (95)
T 2ywk_A 83 YG-----RPINVSGP 92 (95)
T ss_dssp TT-----EECEEECC
T ss_pred CC-----CEEEEEEc
Confidence 43 34566665
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.32 E-value=0.0013 Score=53.06 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=61.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++....+.++|+.|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 71 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNV--GPVINLKMMFDPQT------GRSKGYAFIEFRDLESSASAVRNLNGYQLGS- 71 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTT------CCBCSEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCC------CccceEEEEEECCHHHHHHHHHHhCCCeECC-
Confidence 45789999999999999999999875 34555444432221 1223469999999999999999999998743
Q ss_pred CCCeeeeEEEeccCCC
Q 009733 86 KGAQFKAIVEYAPSQR 101 (527)
Q Consensus 86 KGne~~A~VEfAPYQK 101 (527)
....|+||--..
T Consensus 72 ----~~l~V~~a~~~~ 83 (96)
T 2x1f_A 72 ----RFLKCGYSSNSD 83 (96)
T ss_dssp ----EECEEEECSCSS
T ss_pred ----eEEEEEEcCCCC
Confidence 557788875444
No 22
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.0013 Score=54.39 Aligned_cols=86 Identities=12% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+ . .....-|||.|.+.+++...++.++|..|.
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~-~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPF--GQVISTRILRDS-S------GTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEEECS-S------SCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-C------CCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 4567899999999999999999988874 345554444332 1 112346999999999999999999999986
Q ss_pred cCCC---CeeeeEEEecc
Q 009733 84 NEKG---AQFKAIVEYAP 98 (527)
Q Consensus 84 DsKG---ne~~A~VEfAP 98 (527)
.... ...+..|.||-
T Consensus 93 ~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CCTTSCCCSSCBEEEECC
T ss_pred CCccccCCCCceeEEccC
Confidence 6653 23356777774
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.30 E-value=0.0028 Score=53.65 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 1 MKEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 1 ~k~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
|-.+.+..+|.|.+||+.+||+++.+.+..+ +.|....+...+ . .....-|||.|.+.+++...++.++|.
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~------g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKH--GPISEVLLIKDR-T------SKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTS--SCCSEEEEECST-T------TTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECC-C------CCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 5677888999999999999999999999875 345555555433 2 112346999999999999999999999
Q ss_pred eeEcCCCCeeeeEEEeccCCC
Q 009733 81 VFVNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 81 vFvDsKGne~~A~VEfAPYQK 101 (527)
.|.+ ....|++|--..
T Consensus 72 ~~~g-----~~l~V~~a~~~~ 87 (116)
T 2fy1_A 72 SLHG-----KAIKVEQAKKPS 87 (116)
T ss_dssp BCSS-----SBCEEEECCCSS
T ss_pred EECC-----EEEEEEECCCCC
Confidence 8843 246788885444
No 24
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.0032 Score=51.16 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=64.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|.....+... .. .-.-|||.|.+.+++...++.++++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~------~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNE------RG--SKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT--SCEEEEEEECCT------TT--TCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecC------CC--CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5677899999999999999999999875 345555544321 11 2346999999999999999999999974
Q ss_pred cCCCCeeeeEEEeccCCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKvP 103 (527)
+ ....|++|--....
T Consensus 82 g-----~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 82 G-----RKIEVNNATARVMT 96 (103)
T ss_dssp T-----EECEEEECCSSCCC
T ss_pred C-----EEEEEEEcccCCCC
Confidence 3 45788888655443
No 25
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.29 E-value=0.0005 Score=54.00 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=55.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++....+.++|+.|
T Consensus 1 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 1 GSSGSSGLYIRGLQPGTTDQDLVKLCQPY--GKIVSTKAILDKTT------NKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp CCCCCCEEEEESCCTTCCHHHHHTTSTTT--SCEEEEEEECCSSS------CSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 35678899999999999999999888764 34555554433222 11123599999999999999999998876
Q ss_pred Ec
Q 009733 83 VN 84 (527)
Q Consensus 83 vD 84 (527)
..
T Consensus 73 ~g 74 (85)
T 1x4e_A 73 QA 74 (85)
T ss_dssp CE
T ss_pred ee
Confidence 54
No 26
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.0011 Score=52.79 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+.| .|||.|.+.+++...++.++|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~--------------~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERR--GRVIECDVVKD--------------YAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHH--SCEEEEEECSS--------------CEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcC--CCEEEEEEECC--------------EEEEEECCHHHHHHHHHHhCCCEE
Confidence 35678899999999999999999998875 34555444422 799999999999999999999987
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|++|--+
T Consensus 69 ~g-----~~l~v~~a~~~ 81 (90)
T 2dnp_A 69 KG-----KRINVELSTKG 81 (90)
T ss_dssp TT-----EECEEEESCCC
T ss_pred CC-----cEEEEEECCCC
Confidence 42 35678887543
No 27
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.28 E-value=0.0015 Score=53.11 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+ . ...-.-|||.|.+.+++...++.++|..|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPF--GVIDECTVLRGP-D------GSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECS-S------SCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C------CCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 4567899999999999999999999865 345555554332 1 111346999999999999999999999886
Q ss_pred cCCCCeeeeEEEeccCC
Q 009733 84 NEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQ 100 (527)
+. ......|+||--.
T Consensus 83 gg--~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 83 PG--ASSSLVVKFADTD 97 (105)
T ss_dssp TT--CSSCCEEEESCSS
T ss_pred CC--CCccEEEEECccC
Confidence 63 2235678887543
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.26 E-value=0.0025 Score=51.87 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++.++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPF--GSISRIYLAKDKTT------GQSKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTT--CCEEEEEEEECSSS------CSEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeecCCC------CceeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 45678999999999999999999888864 34555555433222 11234699999999999999999999987
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|+||--.
T Consensus 83 ~g-----~~l~v~~a~~~ 95 (103)
T 2cq0_A 83 DH-----LILNVEWAKPS 95 (103)
T ss_dssp TT-----EECEEEESSCC
T ss_pred CC-----cEEEEEECCCC
Confidence 43 35678887543
No 29
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.0033 Score=50.92 Aligned_cols=76 Identities=20% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+-.+.|....... .-|||.|.+.+++...++.++|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~--------------g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR--------------DYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS--------------SEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC--------------CeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3456899999999999999999999876334554433221 27999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
| ....|+||-
T Consensus 78 ---g--~~l~v~~a~ 87 (99)
T 2cpd_A 78 ---G--SPIEVTLAK 87 (99)
T ss_dssp ---T--EEEEEECCC
T ss_pred ---C--cEEEEEECC
Confidence 2 356788773
No 30
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.0025 Score=51.64 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=62.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++.++|+.|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYET------EKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT--SCCCCEECCCCSSS------CCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc--CCEEEEEEEecCCC------CCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4577899999999999999999999875 34544444332221 122346999999999999999999998874
Q ss_pred cCCCCeeeeEEEeccCCC
Q 009733 84 NEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQK 101 (527)
+ ....|+||--++
T Consensus 81 g-----~~l~V~~a~~~~ 93 (102)
T 2cqb_A 81 G-----RTIRVNLAKPMR 93 (102)
T ss_dssp T-----EEEEEEECCCCC
T ss_pred C-----cEEEEEeCCCCC
Confidence 2 356788875444
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.23 E-value=0.0023 Score=52.05 Aligned_cols=84 Identities=12% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++.. . .....-|||.|.+.+++...++.++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~--~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMME--G------GRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTT--SCEEEEEEEEC--S------SSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC--C------CCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45678999999999999999999988864 34554444421 1 11234699999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
.+ ....|+||--+.
T Consensus 81 ~g-----~~l~V~~a~~~~ 94 (103)
T 2d9p_A 81 AT-----KPLYVALAQRKE 94 (103)
T ss_dssp SS-----SBCEEEECSSCC
T ss_pred CC-----cEEEEEEecccc
Confidence 32 356788875433
No 32
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.23 E-value=0.002 Score=52.66 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.......| -|||.|.+.+++...++.++++.|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~--------------~afV~f~~~~~a~~A~~~l~g~~~~ 71 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--GKLERVKKLKD--------------YAFIHFDERDGAVKAMEEMNGKDLE 71 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--SCEEEEEECSS--------------CEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC--------------EEEEEeCCHHHHHHHHHHHCCCccC
Confidence 3456899999999999999999988875 34544444322 6999999999999999999999874
Q ss_pred cCCCCeeeeEEEeccCCC
Q 009733 84 NEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQK 101 (527)
+ ....|+||--..
T Consensus 72 g-----~~l~v~~a~~~~ 84 (103)
T 2dgu_A 72 G-----ENIEIVFAKPPD 84 (103)
T ss_dssp T-----EEEEEEECCCCC
T ss_pred C-----CEEEEEEcCCCc
Confidence 2 357888885444
No 33
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.23 E-value=0.0022 Score=56.17 Aligned_cols=82 Identities=11% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+.-+.. ...-.-|||.|.+.+++...++.++++.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKS--GDIKKIIMGLDKMK------KTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999999875 34555454432221 112346999999999999999999999983
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
| ....|++|.
T Consensus 108 ---g--~~l~V~~a~ 117 (156)
T 1h2v_Z 108 ---D--RIIRTDWDA 117 (156)
T ss_dssp ---T--EECEEEEES
T ss_pred ---C--eEEEEEECC
Confidence 2 457888885
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.23 E-value=0.002 Score=52.64 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|....++..+ . .....-|||.|.+.+++...++.++|+.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVHYDR-S------GRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECT-T------SCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C------CCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4567899999999999999999998864 345554444322 1 112346999999999999999999999883
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||.
T Consensus 97 g-----~~l~V~~a~ 106 (107)
T 3ulh_A 97 G-----RPMNIQLVT 106 (107)
T ss_dssp T-----EECEEEEEC
T ss_pred C-----cEEEEEEeC
Confidence 2 345677764
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.0024 Score=51.45 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=63.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.++|+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAY--GPLSELHYPIDSLT------KKPKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCCCTTT------CCCCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEeEEEEEecCCC------CCcCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 35677899999999999999999999875 34554444332211 11234699999999999999999999887
Q ss_pred EcCCCCeeeeEEEeccCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKv 102 (527)
.+ ....|++|--++.
T Consensus 76 ~g-----~~l~V~~a~~~~~ 90 (99)
T 1whw_A 76 QG-----RMLHVLPSTIKKE 90 (99)
T ss_dssp SS-----CEEEEEECCCCST
T ss_pred CC-----cEEEEEEcCCCcc
Confidence 53 3467888755443
No 36
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.22 E-value=0.0015 Score=53.30 Aligned_cols=87 Identities=15% Similarity=0.169 Sum_probs=63.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++...++.+++..|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEF--GKIYELTVLKDRFT------GMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHH--SCCCEEECCCCSSS------CSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCC------CCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 45678899999999999999999988875 34555444432221 11124699999999999999999999987
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
.+..| ....|+||--
T Consensus 81 ~~~~g--~~l~v~~a~~ 95 (106)
T 2dgp_A 81 LPGMN--RPIQVKPADS 95 (106)
T ss_dssp CTTCS--SCCEEEECCC
T ss_pred cCCCC--ceEEEEECCc
Confidence 65433 3467777743
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.0018 Score=52.78 Aligned_cols=84 Identities=13% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCC-CCCCccCCCCCcceeEEEEccCcccHHHHHHHh-CCCe
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPG-KSSFFYSYKHQRYSRAYVELKKPAGVFEFAELL-NGHV 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpG-K~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~f-dG~v 81 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++.. +.. .....-|||.|.+.+++...++.+ +++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF--GELKTVRLPKKMTGT------GAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCCCCSSS------CSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc--CCeEEEEEecCCCCC------CCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 4567899999999999999999999875 34555454432 111 112346999999999999999999 8988
Q ss_pred eEcCCCCeeeeEEEeccCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQ 100 (527)
|.+. ...|+||--+
T Consensus 84 ~~g~-----~l~v~~a~~~ 97 (107)
T 2cph_A 84 LYGR-----RLVLEWADSE 97 (107)
T ss_dssp SSSC-----BCEEEECCCC
T ss_pred ECCC-----EEEEEeCCCC
Confidence 7532 5678887543
No 38
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0019 Score=52.38 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=60.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|.+||+.+||+++.+.+..+ +.|....+... -.-|||.|.+.+++....+.++|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~~------------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKY--GKAGEVFIHKD------------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTT--CCCSEEEEETT------------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhc--CCeEEEEEecC------------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 35667899999999999999999998875 34544444321 24799999999999999999999987
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|+||--.
T Consensus 77 ~g-----~~l~v~~a~~~ 89 (99)
T 2cpj_A 77 RG-----KQLRVRFACHS 89 (99)
T ss_dssp TT-----BCCEEEESSCC
T ss_pred CC-----ceEEEEEcCCC
Confidence 43 34678887543
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.18 E-value=0.0027 Score=49.30 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=56.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCC
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 87 (527)
++|.|++||+.+||+++.+.+... +.|.....+..... .....-|||.|.+.+++....+.++|+.|. |
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQT------GSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---G 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTT------CCEEEEEEEEESCHHHHHHHHHHHTTCEET---T
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEcCCC------CCccceEEEEECCHHHHHHHHHHhcCCeeC---C
Confidence 579999999999999999999875 34554444432211 122346999999999999999999999973 2
Q ss_pred CeeeeEEEec
Q 009733 88 AQFKAIVEYA 97 (527)
Q Consensus 88 ne~~A~VEfA 97 (527)
....|++|
T Consensus 71 --~~l~v~~a 78 (83)
T 3md1_A 71 --RPLRINWA 78 (83)
T ss_dssp --EECEEEEC
T ss_pred --cEEEEEec
Confidence 24566666
No 40
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.0028 Score=52.76 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=65.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.+++ .|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~Ai~~~~~-~~ 83 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGF--GDIEEAVVITDRQT------GKSRGYGFVTMADRAAAERACKDPNP-II 83 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTT--SCEEEEEESCCSSS------CCCCSEEEEEESSHHHHHHHHTCSSC-EE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeeEEEEEEcCCC------CccceEEEEEECCHHHHHHHHHhCCC-cC
Confidence 35677899999999999999999999865 34655555433222 11234699999999999999999997 44
Q ss_pred EcCCCCeeeeEEEeccCCCCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRVPKP 105 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKvPk~ 105 (527)
+. ....|++|--...|..
T Consensus 84 -~g----~~l~V~~a~~~~~~~~ 101 (116)
T 2cqd_A 84 -DG----RKANVNLAYLGAKPRS 101 (116)
T ss_dssp -TT----EECEEEESTTTCCCCC
T ss_pred -CC----EEEEEEEcccCCCccc
Confidence 32 4578999976655553
No 41
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.15 E-value=0.0018 Score=54.46 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.. ...-.-|||.|.+.+++...++.++|+.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRT------GYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCTTT------SSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 4457799999999999999999999864 34555554433222 111346999999999999999999999983
Q ss_pred cCCCCeeeeEEEeccCCCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKvPk 104 (527)
+ ....|+||--..-+.
T Consensus 91 g-----~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 91 G-----QPISVDWCFVRGPPK 106 (126)
T ss_dssp S-----SBCEEEESEESSSCC
T ss_pred C-----eEEEEEEecCCCCCC
Confidence 3 346788886554443
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=97.12 E-value=0.0028 Score=51.34 Aligned_cols=82 Identities=11% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCcee--------EEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHH
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--------FCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFA 74 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw--------~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~ 74 (527)
.+.+.++|.|++||+.+||+++.+.+... +.|.. ...+..+.. .....-|||.|.+.+++....
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~~~~------g~~~G~afV~f~~~~~a~~Ai 80 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQI--GIIKTNKKTGQPMINLYTDRET------GKLKGEATVSFDDPPSAKAAI 80 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTT--SCBCEETTTTEESEEEEECTTT------CSEEEEEEEEBSSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHh--CCEeeccccccccEEEEecCCC------CCeeeEEEEEECCHHHHHHHH
Confidence 46788999999999999999999999864 23443 233221111 112346999999999999999
Q ss_pred HHhCCCeeEcCCCCeeeeEEEec
Q 009733 75 ELLNGHVFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 75 d~fdG~vFvDsKGne~~A~VEfA 97 (527)
+.++|..|.+. ...|++|
T Consensus 81 ~~l~g~~~~g~-----~l~V~~A 98 (99)
T 2la6_A 81 DWFDGKEFSGN-----PIKVSFA 98 (99)
T ss_dssp HHHTTCBSSSS-----BCEEEEC
T ss_pred HHhCCCEeCCc-----EEEEEec
Confidence 99999987532 3566665
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.12 E-value=0.0021 Score=53.36 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=60.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.++++.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPF--GNVVSAKVFIDKQT------NLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGG--SCCSEEEEEECSSS------CSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCC------CCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3466899999999999999999999875 33544444432211 112345999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||-
T Consensus 94 g-----~~l~V~~a~ 103 (115)
T 2cpz_A 94 M-----KRLKVQLKR 103 (115)
T ss_dssp T-----EECEEECCC
T ss_pred C-----EEEEEEEcC
Confidence 3 356788774
No 44
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.0038 Score=51.52 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=61.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+. .....-|||.|.+.+++...++.++++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~-------g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMA--GVVVRADILEDKD-------GKSRGIGTVTFEQSIEAVQAISMFNGQLL 81 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTT-------CSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCC-------CCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999865 3455444432211 11234699999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
. | ....|+||-.
T Consensus 82 ~---g--~~l~v~~a~~ 93 (114)
T 2do0_A 82 F---D--RPMHVKMDER 93 (114)
T ss_dssp T---T--EECEEEECSC
T ss_pred C---C--CEEEEEEccc
Confidence 4 2 3467888744
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.11 E-value=0.0028 Score=51.65 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++.+..+|.|.+||+.+||+++.+.+..+ + |.....+.-+.. .....-|||.|.+.+++...+ .++|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g-i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDL--S-IRSVRLVRDKDT------DKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTS--C-EEEEEEEECSSS------CSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--C-ceEEEEeecCCC------CccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 45677899999999999999999999876 3 555554432221 112346999999999999999 8999887
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
.+ ....|++|--
T Consensus 81 ~g-----~~l~V~~a~~ 92 (103)
T 2dng_A 81 GD-----RSLRVDIAEG 92 (103)
T ss_dssp TT-----EECEEEECCC
T ss_pred CC-----eEEEEEEecC
Confidence 32 3567888753
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.09 E-value=0.0035 Score=51.54 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|.+||+.+|++++.+.+..+ |.|.....+..+.. ...-.-|||.|.+.+++....+.++|+.|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRT------GFSKGYALVEYETHKQALAAKEALNGAEIM- 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEECCBCTTT------SSBCSEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCC------CCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 456789999999999999999999875 34555554432221 112347999999999999999999999873
Q ss_pred CCCCeeeeEEEecc
Q 009733 85 EKGAQFKAIVEYAP 98 (527)
Q Consensus 85 sKGne~~A~VEfAP 98 (527)
| ....|+||-
T Consensus 95 --g--~~l~V~~a~ 104 (110)
T 1oo0_B 95 --G--QTIQVDWCF 104 (110)
T ss_dssp --T--EECEEEESE
T ss_pred --C--cEEEEEEcc
Confidence 2 356777763
No 47
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.07 E-value=0.0029 Score=54.13 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=62.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+|++++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.++.....+.++|..|.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDKLT------GRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcCCC------CCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 3466899999999999999999999875 35666665543322 111345999999999999999999999873
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
|...+-.|+||
T Consensus 158 ---g~~~~l~V~~A 168 (168)
T 1b7f_A 158 ---GGSQPLSVRLA 168 (168)
T ss_dssp ---TCSSCCEEEEC
T ss_pred ---CCCeEEEEEeC
Confidence 33455667775
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.06 E-value=0.0027 Score=52.60 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=60.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++.+..+|.|++||+.+|++++.+.+..+ |.|.....+.. .....-|||.|.+.+++....+.++|+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~---------~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKY--GPIRQIRVGNT---------PETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEECS---------TTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC---------CCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 46678899999999999999999998865 34544444321 11145699999999999999999999988
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+ ....|+||-
T Consensus 73 ~g-----~~l~v~~a~ 83 (115)
T 3lqv_A 73 SN-----RYLVVLYYN 83 (115)
T ss_dssp SS-----CBCEEEECC
T ss_pred CC-----eEEEEEEec
Confidence 32 246778874
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.06 E-value=0.0028 Score=51.61 Aligned_cols=81 Identities=11% Similarity=0.092 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|.+||+.+|++++.+.+..+ +.|........+.. ...-.-|||.|.+.+++....+.++|+.|.+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEY--GEIKNIHLNLDRRT------GYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------SSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCC------CceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 456789999999999999999999875 34555555433221 1123469999999999999999999987753
Q ss_pred CCCCeeeeEEEecc
Q 009733 85 EKGAQFKAIVEYAP 98 (527)
Q Consensus 85 sKGne~~A~VEfAP 98 (527)
....|+||-
T Consensus 93 -----~~l~V~~a~ 101 (106)
T 1p27_B 93 -----QPISVDWCF 101 (106)
T ss_dssp -----SBCEEEESE
T ss_pred -----cEEEEEeec
Confidence 245677763
No 50
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.04 E-value=0.004 Score=52.48 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|......... . .....-|||.|.+.+++....+.++|+.|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~-~------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-S------GRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTT--SCCSEEEEECCS-S------SSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEECC-C------CCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4567899999999999999999988874 345554444322 1 112346999999999999999999999873
Q ss_pred cCCCCeeeeEEEeccCCCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKvPk 104 (527)
+ ....|+||.-...+.
T Consensus 103 g-----~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 103 G-----RPMDIQLVASQIDLE 118 (124)
T ss_dssp S-----CEEEEEEECCTTCCC
T ss_pred C-----cEEEEEEeCCCCCCC
Confidence 3 357888887666544
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.04 E-value=0.002 Score=54.24 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=57.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
|...++|.|++||+.+||+++.+.+..+ |.|.....+..+ .. .-.-|||.|.+.+++...++.++|+.|.
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~i~~d~------~~--~kg~afV~f~~~~~A~~Ai~~l~~~~~~ 71 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE------NG--SKGYGFVHFETQEAAERAIEKMNGMLLN 71 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET------TE--EEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHhcc--CCEEEEEEeecC------CC--CCceEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5567899999999999999999999875 345444433211 01 1235999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|++|-
T Consensus 72 g-----~~i~V~~a~ 81 (115)
T 4f25_A 72 D-----RKVFVGRFK 81 (115)
T ss_dssp T-----EECEEEESS
T ss_pred C-----EEEEEEECC
Confidence 3 245677764
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=97.03 E-value=0.0026 Score=52.94 Aligned_cols=81 Identities=16% Similarity=0.157 Sum_probs=59.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.++.....+.++|+.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF--GNVISAKVFIDKQT------SLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS--CEEEEEEECCCSSS------SCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEeCCCC------CCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4567899999999999999999999864 34555454432222 112357999999999999999999998874
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
+ ....|+||
T Consensus 109 g-----~~l~V~~a 117 (118)
T 2khc_A 109 T-----KRLKVQLK 117 (118)
T ss_dssp T-----EECCEEEC
T ss_pred C-----EEEEEEec
Confidence 3 23455554
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.02 E-value=0.0036 Score=52.03 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=58.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe--
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-- 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v-- 81 (527)
......|.||+|||..||+++.+.+.++-.-.+.....+.-+.+ ...-.-|||.|.+.+++....+.++|..
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t------g~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT------QQNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS------SSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC------CCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 44567899999999999999999998763222333333322211 1112359999999999999999999863
Q ss_pred -eEcCCCCeeeeEEEec
Q 009733 82 -FVNEKGAQFKAIVEYA 97 (527)
Q Consensus 82 -FvDsKGne~~A~VEfA 97 (527)
.+|.+ .-.|+||
T Consensus 80 ~~i~Gr----~i~V~~A 92 (95)
T 2lkz_A 80 LKIDGK----TIGVDFA 92 (95)
T ss_dssp EEETTE----EEEEEEC
T ss_pred ceECCE----EEEEEEc
Confidence 34442 4567776
No 54
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.004 Score=51.38 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCce--------eEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHH
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN--------WFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAE 75 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvd--------w~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d 75 (527)
..+..+|.|.+||+.+|++++.+.+..+- .|. ....+..+.. .....-|||.|.+.+++...++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCG--VVKMNKRTGQPMIHIYLDKET------GKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTS--CBCBCSSSCCBSEECCBCTTT------CSBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CEeEccccCccCEEEEEeCCC------CCeeeEEEEEECCHHHHHHHHH
Confidence 45778999999999999999999988752 333 1222211111 1123469999999999999999
Q ss_pred HhCCCeeEcCCCCeeeeEEEecc
Q 009733 76 LLNGHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 76 ~fdG~vFvDsKGne~~A~VEfAP 98 (527)
.++|+.|.+ ....|++|-
T Consensus 84 ~l~g~~~~g-----~~l~V~~a~ 101 (113)
T 2cpe_A 84 WFDGKDFQG-----SKLKVSLAR 101 (113)
T ss_dssp HHTTCEETT-----EECEEECSS
T ss_pred HcCCCccCC-----CEEEEEECC
Confidence 999999842 346777764
No 55
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.00 E-value=0.0037 Score=53.16 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
....+|.|++||+.+|++++.+.+..+ +.|....+...... ...-.-|||.|.+.++.....+.++|..|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 156 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQVT------GVSRGVGFIRFDKRIEAEEAIKGLNGQKPS- 156 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCCCT-
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecCCC------CCccceEEEEeCCHHHHHHHHHHhcCCccC-
Confidence 356789999999999999999999875 34655555433211 112345999999999999999999999873
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
|...+..|.||
T Consensus 157 --g~~~~i~v~~A 167 (167)
T 1fxl_A 157 --GATEPITVKFA 167 (167)
T ss_dssp --TCSSCCEEEEC
T ss_pred --CCccceEEEeC
Confidence 33445677776
No 56
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.0026 Score=51.48 Aligned_cols=79 Identities=10% Similarity=0.154 Sum_probs=57.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|.+||+.+||+++.+.+..+. .+ ..+.-+.. .....-|||.|.+.+++...++.++++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~--~~---~~~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV--RA---RIVTDRET------GSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS--EE---EEEECSSS------CSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe--EE---EEEecCCC------CCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 56778999999999999999998888531 12 22211111 112346999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||-
T Consensus 81 g-----~~l~V~~a~ 90 (102)
T 2fc8_A 81 G-----NKVTLDWAK 90 (102)
T ss_dssp T-----EECEEEECC
T ss_pred C-----eEEEEEEec
Confidence 3 357888874
No 57
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.99 E-value=0.0035 Score=53.10 Aligned_cols=81 Identities=14% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+|++++.+.+... +.|.....+..+.. ...-.-|||.|.+.+++....+.++|+.|-
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF--GDITDIQIPLDYET------EKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG--SCEEEEECCCCTTT------CCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc--CCEEEEEEeecCCC------CCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4567899999999999999999999875 34555444332221 122346999999999999999999998774
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
| ....|+||
T Consensus 132 ---g--~~l~v~~A 140 (140)
T 2ku7_A 132 ---G--RTIRVNLA 140 (140)
T ss_dssp ---T--EEEEEEC-
T ss_pred ---C--EEEEEEeC
Confidence 2 23456654
No 58
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0036 Score=50.08 Aligned_cols=80 Identities=21% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
.....+|.|.+||+.+||+++.+.+..+ +.|....++.-+. ...+|||.|.+.++....++.++|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~i~~~~---------~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQY--GVVESCEQVNTDS---------ETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHH--SCEEEEEEECCSS---------SSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhc--CCeEEEEEeecCC---------CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3457899999999999999999988865 3455442232111 1223999999999999999999999884
Q ss_pred cCCCCeeeeEEEeccC
Q 009733 84 NEKGAQFKAIVEYAPS 99 (527)
Q Consensus 84 DsKGne~~A~VEfAPY 99 (527)
| ....|+||.-
T Consensus 81 ---g--~~l~V~~a~~ 91 (96)
T 2e44_A 81 ---N--FTLKVAYIPD 91 (96)
T ss_dssp ---S--CBCEEEECCC
T ss_pred ---C--cEEEEEEcCc
Confidence 2 2467777753
No 59
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.98 E-value=0.003 Score=54.26 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|++||+.+|++++.+.+..+ +.|.......... ...-.-|||.|.+.++.....+.++|..+.+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~~-------g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGPD-------GLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTT-------SCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECCC-------CCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 366789999999999999999999875 3465555543211 1112349999999999999999999988775
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
..| .+..|.||
T Consensus 164 g~~--~~l~V~~a 174 (175)
T 3nmr_A 164 GCS--SPMVVKFA 174 (175)
T ss_dssp TCS--SCCEEEEC
T ss_pred CCC--CCeEEEec
Confidence 422 34566665
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.0024 Score=52.12 Aligned_cols=82 Identities=16% Similarity=0.089 Sum_probs=59.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++. +++.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQY--GEVVDCVIMKDKTT------NQSRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTT--SCEEEEEEEECSSS------CCEEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeCCCC------CCcceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 56788999999999999999999999875 34555554432221 11234699999999999999998 88777
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+. ...|++|-
T Consensus 83 ~g~-----~l~V~~a~ 93 (105)
T 2dh8_A 83 DGR-----NIDPKPCT 93 (105)
T ss_dssp TTE-----EEBCCCSC
T ss_pred CCE-----EEEEEEcc
Confidence 532 35566654
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0051 Score=49.40 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=57.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCC-CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~g-kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+....+|.|++||+.+||+++.+.+..+-.- .+.+..... ......-|||.|.+.+++...++.++|+.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~---------~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE---------KGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECS---------SSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECC---------CCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 4556899999999999999999988865210 122222111 111235699999999999999999999987
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+ ....|++|-
T Consensus 83 ~g-----~~l~V~~a~ 93 (98)
T 2cqp_A 83 GS-----RKVKLVLGS 93 (98)
T ss_dssp TT-----EECEEEESS
T ss_pred CC-----eEEEEEEcC
Confidence 43 346677763
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.97 E-value=0.0023 Score=53.54 Aligned_cols=83 Identities=12% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
+++.+..+|.|++||+.+|++++.+.+..+ +.|....++..+.. .....-|||.|.+.+++....+.++|..
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~F~~~~~A~~Ai~~l~g~~ 92 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPF--GRIESIQLMMDSET------GRSKGYGFITFSDSECAKKALEQLNGFE 92 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTT--SCEEEEEEEEETTT------TEEEEEEEEEESCHHHHHHHHHHHTTCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCC------CccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 356778899999999999999999999865 34555444432211 1123479999999999999999999988
Q ss_pred eEcCCCCeeeeEEEec
Q 009733 82 FVNEKGAQFKAIVEYA 97 (527)
Q Consensus 82 FvDsKGne~~A~VEfA 97 (527)
|-+. ...|++|
T Consensus 93 i~g~-----~l~V~~a 103 (108)
T 2jrs_A 93 LAGR-----PMKVGHV 103 (108)
T ss_dssp SSSS-----CCEEECS
T ss_pred ECCE-----EEEEEEc
Confidence 7432 3566665
No 63
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0024 Score=51.50 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|.+||+.+||+++.+.+..+ +.|....+..+ ..-|||.|.+.+++....+.++++.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~v~~v~~~~~------------~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF--GSIRTIDHVKG------------DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT--SCEEEEEECSS------------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeCC------------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 4567899999999999999999999875 34555554432 237999999999999999999999874
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
. .-....|+||-
T Consensus 80 ~---~g~~l~V~~a~ 91 (97)
T 1why_A 80 G---PDRRLRVDFAK 91 (97)
T ss_dssp S---SSCBCEEEECC
T ss_pred C---CCcEEEEEECC
Confidence 1 12346777763
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.0029 Score=50.34 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|....... .-|||.|.+.+++....+.++++.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~~~~--------------g~afV~f~~~~~A~~A~~~l~g~~~ 67 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQY--GKVLECDIIK--------------NYGFVHIEDKTAAEDAIRNLHHYKL 67 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTS--SCEEEEEEET--------------TEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEC--------------CEEEEEECCHHHHHHHHHHhcCCcc
Confidence 45678899999999999999999999875 3455544441 2599999999999999999999887
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|++|--+
T Consensus 68 ~g-----~~l~v~~a~~~ 80 (90)
T 2dnq_A 68 HG-----VNINVEASKNK 80 (90)
T ss_dssp SS-----CBCEEECSSCC
T ss_pred CC-----cEEEEEECCCC
Confidence 43 24678877543
No 65
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.93 E-value=0.0032 Score=53.54 Aligned_cols=81 Identities=20% Similarity=0.282 Sum_probs=60.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+.++|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.++.....+.++|..|.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~~~~~~~~------~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g- 71 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSI--GEIESCKLVRDKIT------GQSLGYGFVNYIDPKDAEKAINTLNGLRLQT- 71 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCC------CcceeEEEEEECCHHHHHHHHHHcCCCccCC-
Confidence 35789999999999999999999875 34655555443222 1123569999999999999999999988843
Q ss_pred CCCeeeeEEEeccC
Q 009733 86 KGAQFKAIVEYAPS 99 (527)
Q Consensus 86 KGne~~A~VEfAPY 99 (527)
....|+++.-
T Consensus 72 ----~~l~v~~~~~ 81 (167)
T 1fxl_A 72 ----KTIKVSYARP 81 (167)
T ss_dssp ----EECEEEECCC
T ss_pred ----ceEEEEecCC
Confidence 3456777753
No 66
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.93 E-value=0.0039 Score=52.21 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=58.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ |.|.....+ -.-|||.|.+.+++....+.++|+.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~--------------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPF--GPMKEVKIL--------------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTT--SCCCEEEEE--------------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEE--------------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45678899999999999999999999875 344444443 23699999999999999999999998
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.| ....|+||
T Consensus 91 ---~g--~~l~V~~a 100 (108)
T 2jvo_A 91 ---AN--QPLEVVYS 100 (108)
T ss_dssp ---TT--EECEEESC
T ss_pred ---CC--eEEEEEEe
Confidence 22 34677776
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.90 E-value=0.0033 Score=50.96 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=52.9
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCC
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 87 (527)
..|.||+||+.+||+++.+.+...-. .|.....+.-+.. ...-.-|||.|.+.+++....+..++....+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~-~v~~v~i~~d~~t------~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g-- 72 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGV-QAREVRLMRNKSS------GQSRGFAFVEFSHLQDATRWMEANQHSLNILG-- 72 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTC-CCSBCCSSSCSSS------CCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCC-EeEEEEEEecCCC------CCcCceEEEEecCHHHHHHHHHhcCCCeEECC--
Confidence 36899999999999999999987521 2332222211111 11123499999999999998887655544433
Q ss_pred CeeeeEEEecc
Q 009733 88 AQFKAIVEYAP 98 (527)
Q Consensus 88 ne~~A~VEfAP 98 (527)
....|+||-
T Consensus 73 --r~i~V~~a~ 81 (91)
T 2lxi_A 73 --QKVSMHYSD 81 (91)
T ss_dssp --EEEEEECCC
T ss_pred --EEEEEEEcC
Confidence 357788873
No 68
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0059 Score=50.36 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=61.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+....+|.|.+||+.+|++++.+.+..+ +.|....++.. -.-|||.|.+.+++...++.++|+.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~------------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPF--GQIMEIRVFPE------------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHH--SCEEEEEEETT------------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 5567899999999999999999999875 34555454432 346999999999999999999999874
Q ss_pred cCCCCeeeeEEEeccCCC
Q 009733 84 NEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQK 101 (527)
+ ....|+||--+.
T Consensus 88 g-----~~l~v~~a~~~~ 100 (109)
T 1x4g_A 88 G-----HVVKCYWGKESP 100 (109)
T ss_dssp T-----EECEEECCCCCC
T ss_pred C-----cEEEEEecCCCC
Confidence 3 356788875543
No 69
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.90 E-value=0.0055 Score=49.99 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ + |.....+..+.. ......-|||.|.+.+++...+ .++++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~-----~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSN-----PERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTS--C-EEEEECCBCSSC-----TTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHC--C-ceEEEEecCCCC-----CCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4567899999999999999999999875 4 555444322111 0111235999999999999999 99999873
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||-
T Consensus 83 g-----~~l~V~~a~ 92 (104)
T 1wi8_A 83 N-----KRIRVDVAD 92 (104)
T ss_dssp T-----EECEEEECC
T ss_pred C-----cEEEEEEcc
Confidence 2 356788874
No 70
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.89 E-value=0.0053 Score=52.54 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=60.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
++..+|.|++||+.+||+++.+.+..+ +.|....++..+.. .....-|||.|.+.++.....+.++|..|.+
T Consensus 1 ~~~~~l~v~nlp~~~~~~~l~~~f~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 72 (168)
T 1b7f_A 1 ASNTNLIVNYLPQDMTDRELYALFRAI--GPINTCRIMRDYKT------GYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 72 (168)
T ss_dssp -CCSEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTT------TEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEEeCCC------CccceEEEEEECCHHHHHHHHHhcCCCEeCC
Confidence 367899999999999999999999875 34544444322111 1122469999999999999999999998832
Q ss_pred CCCCeeeeEEEeccCCC
Q 009733 85 EKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 85 sKGne~~A~VEfAPYQK 101 (527)
....|+++.-+.
T Consensus 73 -----~~l~v~~~~~~~ 84 (168)
T 1b7f_A 73 -----KRLKVSYARPGG 84 (168)
T ss_dssp -----EECEEEECCCCS
T ss_pred -----cEEEEEecCCCc
Confidence 346677775433
No 71
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.87 E-value=0.0051 Score=48.72 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+..+..+|.|++||+.+|++++.+.+..+ +.|....... + . ......|||.|.+.+++....+.++|+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~v~~~~i~~-~-~------g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNEC--GHVLYADIKM-E-N------GKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTT--SCEEEEEEEE-S-S------SCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEc-c-C------CCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 34678899999999999999999999875 3455444432 1 1 11234699999999999999999999987
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+. ...|++|--.
T Consensus 74 ~g~-----~l~v~~a~~~ 86 (92)
T 2dgv_A 74 SGR-----EIDVRIDRNA 86 (92)
T ss_dssp TTB-----CCCCEECSCC
T ss_pred CCc-----EEEEEEcCCC
Confidence 432 3556666433
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.87 E-value=0.0036 Score=51.24 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC----
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN---- 78 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd---- 78 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-+.. .....-|||.|.+.+++...++.++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 82 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQF--GDLKYVRVVLHPDT------EHSKGCAFAQFMTQEAAQKCLAAASLEAE 82 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCBCSSS------CCBCSEEEEEESSHHHHHHHHHHHCTTTT
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CCCccEEEEEECCHHHHHHHHHHhccccc
Confidence 35678899999999999999999999865 34544444322211 1123469999999999999999999
Q ss_pred --CCeeEcCCCCeeeeEEEecc
Q 009733 79 --GHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 79 --G~vFvDsKGne~~A~VEfAP 98 (527)
++.|.+ ....|+||-
T Consensus 83 ~~~~~~~g-----~~l~v~~a~ 99 (111)
T 1x4h_A 83 GGGLKLDG-----RQLKVDLAV 99 (111)
T ss_dssp TCCEESSS-----CEEEEECCC
T ss_pred cCCcEEcC-----EEEEEEECC
Confidence 777632 246777774
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.86 E-value=0.0049 Score=49.71 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=61.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|....++..+.. ...-.-|||.|.+.+++....+ ++++.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKF--GVVTEVVMIYDAEK------QRPRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSS--SCEEEEEECCCTTT------CSCCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEeCCCC------CCCCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 45677899999999999999999999875 45655555432222 1113469999999999999998 899877
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
.+ ....|++|--
T Consensus 77 ~g-----~~l~V~~a~~ 88 (99)
T 2dgs_A 77 MG-----KKVEVKRAEP 88 (99)
T ss_dssp SS-----CBCEEEECCC
T ss_pred CC-----eEEEEEECCC
Confidence 43 2467787753
No 74
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.86 E-value=0.0028 Score=54.91 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.++|..|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~t------g~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKY--GPIADVSIVYDQQS------RRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTT--SCEEEEEEECCSSS------SCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46678899999999999999999999875 34555555432221 11234699999999999999999999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
-+. ...|+||
T Consensus 114 ~g~-----~l~V~~a 123 (129)
T 2kxn_B 114 DGR-----RIRVDFS 123 (129)
T ss_dssp SSS-----CCEESCC
T ss_pred CCE-----EEEEEEe
Confidence 432 3556665
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.84 E-value=0.0072 Score=50.31 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=59.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|++||+.+||+++.+.+..+ |.|.....+..+ .. .-.-|||.|.+.+++....+.++|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~------~~--~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQF--GKILDVEIIFNE------RG--SKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGT--CCCSCEEECCBT------TB--CTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhc--CCEEEEEEEECC------CC--CceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 35567899999999999999999999875 345444443211 11 234699999999999999999999987
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|++|
T Consensus 95 ~g-----~~l~V~~a 104 (109)
T 2err_A 95 EG-----RKIEVNNA 104 (109)
T ss_dssp TT-----EECEEEEC
T ss_pred CC-----EEEEEEEC
Confidence 43 34567776
No 76
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.84 E-value=0.0034 Score=53.64 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=61.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++.++|..|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY--GPIESVKIVCDRET------RQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH--SCEEEEEEEEETTT------TEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcCCC------CCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4556899999999999999999998875 34555444432221 111346999999999999999999998875
Q ss_pred cCCCCeeeeEEEeccC
Q 009733 84 NEKGAQFKAIVEYAPS 99 (527)
Q Consensus 84 DsKGne~~A~VEfAPY 99 (527)
+ ....|+||--
T Consensus 111 g-----~~l~v~~a~~ 121 (139)
T 1u6f_A 111 N-----KRLKVALAAS 121 (139)
T ss_dssp S-----CEEEEEESSC
T ss_pred C-----eEEEEEECCC
Confidence 3 2467888743
No 77
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.0056 Score=51.35 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=60.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
...+|.|++||+.+||+++.+.+..+ +.|......+ + -.-|||.|.+.++...-++.++|+.|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~---~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF--GSLGRVLLPE---G---------GITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEECCS---S---------SSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeC---C---------CCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 45799999999999999999999875 3455444432 1 11399999999999999999999987532
Q ss_pred CCCeeeeEEEeccCCCC
Q 009733 86 KGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 86 KGne~~A~VEfAPYQKv 102 (527)
...|+||+-...
T Consensus 75 -----~l~V~~a~~~~~ 86 (111)
T 1whx_A 75 -----PLYLEWAPIGVF 86 (111)
T ss_dssp -----BCEEEEEETTTT
T ss_pred -----EEEEEECCCCcc
Confidence 467999975443
No 78
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.83 E-value=0.0085 Score=50.62 Aligned_cols=83 Identities=11% Similarity=0.016 Sum_probs=61.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-... ...-.-|||.|.+.+++...++.++|..|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~--G~i~~v~i~~d~~t------g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~ 74 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKY--GEVEEVEILLHPRT------RKHLGLARVLFTSTRGAKETVKNLHLTSVM 74 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhc--CCeeEEEEEECCCC------CceeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5678899999999999999999999875 34544333221111 112345999999999999999999999884
Q ss_pred cCCCCeeeeEEEeccC
Q 009733 84 NEKGAQFKAIVEYAPS 99 (527)
Q Consensus 84 DsKGne~~A~VEfAPY 99 (527)
. ..-.|++|+.
T Consensus 75 g-----r~i~V~~a~~ 85 (110)
T 3s8s_A 75 G-----NIIHAQLDIK 85 (110)
T ss_dssp T-----EECEEEECST
T ss_pred C-----eEEEEEECCC
Confidence 3 2467888853
No 79
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.82 E-value=0.0033 Score=53.99 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=57.0
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .......-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~----~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQY--GAVYEINVLRDRSQ----NPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEECSS----SSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCC----CCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 46799999999999999999999875 34655555432222 1012244699999999999999999999988765
Q ss_pred CC
Q 009733 86 KG 87 (527)
Q Consensus 86 KG 87 (527)
.+
T Consensus 76 ~~ 77 (175)
T 3nmr_A 76 MH 77 (175)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 80
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0039 Score=51.47 Aligned_cols=83 Identities=17% Similarity=0.343 Sum_probs=58.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccC-CCc-eeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRY-NWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~-gkv-dw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
..+..+|.|++||+.+||+++.+.+..+-. ..+ .......|+. ..-|||.|.+.+++...++.++|+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~----------~g~afV~f~~~~~a~~Ai~~l~g~~ 91 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM----------RGQAFITFPNKEIAWQALHLVNGYK 91 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSS----------CSEEEEECSSHHHHHHHHHHSTTCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCcc----------ceEEEEEECCHHHHHHHHHHhCCCE
Confidence 446689999999999999999988876421 011 1222223321 2369999999999999999999998
Q ss_pred eEcCCCCeeeeEEEeccCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQK 101 (527)
|. | ....|+||--.+
T Consensus 92 ~~---g--~~l~v~~a~~~~ 106 (115)
T 2cpx_A 92 LY---G--KILVIEFGKNKK 106 (115)
T ss_dssp CS---S--CBCEEEECCCCS
T ss_pred eC---C--cEEEEEEccCCC
Confidence 83 2 246788875443
No 81
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=96.80 E-value=0.0024 Score=49.95 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
...+|.|++||+.+||+++.+.+..+ +.|.....+..... ......-|||.|.+.+++....+.++|+.|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~-----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTY--GKIKMIDMPVERMH-----PHLSKGYAYVEFENPDEAEKALKHMDGGQIDG- 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT--SCEEEEECCEETTE-----EEEECSEEEEEESSHHHHHHHHHHHTTCEETT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEeCCCC-----CCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-
Confidence 45789999999999999999998874 34544443321111 01124479999999999999999999999843
Q ss_pred CCCeeeeEEEec
Q 009733 86 KGAQFKAIVEYA 97 (527)
Q Consensus 86 KGne~~A~VEfA 97 (527)
....|++|
T Consensus 75 ----~~l~v~~a 82 (88)
T 4a8x_A 75 ----QEITATAV 82 (88)
T ss_dssp ----EECEEEEE
T ss_pred ----eEEEEEEC
Confidence 24567776
No 82
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.0033 Score=50.90 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=58.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|++||+.+||+++.+.+..+ +.|........+.. .....-|||.|.+.+++....+.++|+.|.+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g- 77 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEV--GPVVSFRLVYDRET------GKPKGYGFCEYQDQETALSAMRNLNGREFSG- 77 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTT--SCCSEEEEEEETTT------TEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhc--CCeeEEEEEeCCCC------CccceEEEEEECCHHHHHHHHHHhCCCeeCC-
Confidence 35789999999999999999999875 33444444322111 1123469999999999999999999998833
Q ss_pred CCCeeeeEEEeccC
Q 009733 86 KGAQFKAIVEYAPS 99 (527)
Q Consensus 86 KGne~~A~VEfAPY 99 (527)
....|+||--
T Consensus 78 ----~~l~v~~a~~ 87 (104)
T 1p1t_A 78 ----RALRVDNAAS 87 (104)
T ss_dssp ----SCBEEEETTC
T ss_pred ----cEEEEEeCCC
Confidence 2467787753
No 83
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.79 E-value=0.0047 Score=49.16 Aligned_cols=78 Identities=14% Similarity=0.286 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
....+|.|++||+.+||+++.+.+..+ . |...... .+ -.-|||.|.+.+++....+.++|..|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~--v~~~~i~---~~---------~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-D--LKYCYVD---RN---------KRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-C--CCCEEEE---GG---------GTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-C--eEEEEEe---CC---------CcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 457899999999999999999999876 2 4333321 11 2369999999999999999999998743
Q ss_pred CCCCeeeeEEEeccCCCC
Q 009733 85 EKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 85 sKGne~~A~VEfAPYQKv 102 (527)
....|++||-..+
T Consensus 68 -----~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 68 -----KDLIVQLQPTDAL 80 (88)
T ss_dssp -----EEEEEEECCCCCC
T ss_pred -----cEEEEEEcCCCce
Confidence 3578999976554
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.0054 Score=49.64 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.| ..+. + . ......-|||.|.+.+++...++.++++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v---~~~~-~-~-----~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA--TFI---KVPQ-N-Q-----NGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC--SEE---ECCB-C-S-----SSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CEE---EEEE-C-C-----CCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 4578899999999999999999998874 233 1111 1 0 1112347999999999999999999998875
Q ss_pred cCCCCeeeeEEEeccCC
Q 009733 84 NEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQ 100 (527)
+ ....|+||--+
T Consensus 80 g-----~~l~v~~a~~~ 91 (101)
T 2fc9_A 80 G-----RAIRLELQGPR 91 (101)
T ss_dssp T-----EEEEEEECSSC
T ss_pred C-----eEEEEEEcCCC
Confidence 2 34678887544
No 85
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.79 E-value=0.0039 Score=48.71 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=57.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHh-CCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELL-NGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~f-dG~vF 82 (527)
..+..+|.|.+||+.+|++++.+.+..+ +.|....+.. + -..|||.|.+.++.....+.+ +|+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~--G~i~~~~~~~---~---------kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF--GEIRTITVVQ---R---------QQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT--SCEEEEEEEG---G---------GTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC--CCEeEEEEEC---C---------CCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 4567899999999999999999999875 3455555542 1 246999999999999999988 88776
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|+||
T Consensus 75 ~g-----~~l~v~~a 84 (85)
T 2ytc_A 75 NG-----RRLNVKWG 84 (85)
T ss_dssp TT-----EECCEEEC
T ss_pred CC-----CEEEEEec
Confidence 43 24556665
No 86
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0032 Score=50.59 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=62.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..... +.......-|||.|.+.+++....+.++|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~---~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKV--GAIKSCTISKKKNK---AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT--SCEEEEEEEEEECT---TCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC---CCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 3567899999999999999999999864 34544444322110 000122346999999999999999999999875
Q ss_pred cCCCCeeeeEEEeccCCC
Q 009733 84 NEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQK 101 (527)
+ ....|++|--..
T Consensus 77 g-----~~l~V~~a~~~~ 89 (98)
T 2cpf_A 77 G-----HKLEVRISERAT 89 (98)
T ss_dssp T-----EECEEECSSCSS
T ss_pred C-----eEEEEEEccCCC
Confidence 3 356788874443
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.75 E-value=0.0051 Score=49.92 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=59.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe-
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV- 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v- 81 (527)
.+.+..+|.|.+||+.+||+++.+.+...+ +.|.....+... . ...-.-|||.|.+.+++...++.++++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~-G~v~~v~i~~~~-~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 76 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVY-PSCRGGKVVLDQ-T------GVSKGYGFVKFTDELEQKRALTECQGAVG 76 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHC-TTEEEEEEEECT-T------CCEEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhC-CCeEEEEEEECC-C------CCccceEEEEECCHHHHHHHHHHccCCcc
Confidence 466789999999999999999999998722 245444443322 1 1123469999999999999999999988
Q ss_pred eEcCCCCeeeeEEEec
Q 009733 82 FVNEKGAQFKAIVEYA 97 (527)
Q Consensus 82 FvDsKGne~~A~VEfA 97 (527)
|.+. ...|++|
T Consensus 77 ~~g~-----~l~v~~a 87 (104)
T 2dhg_A 77 LGSK-----PVRLSVA 87 (104)
T ss_dssp SSSS-----CCCCCBC
T ss_pred cCCE-----eEEEEEc
Confidence 6432 3456666
No 88
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0054 Score=48.76 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+....+|.|++||+.+||+++.+.+..+ .|.....+... . ...-.-|||.|.+.+++....+ ++|..|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~---~i~~v~i~~~~-~------g~~~g~afV~f~~~~~a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL---KPVAIRIVRNA-H------GNKTGYIFVDFSNEEEVKQALK-CNREYM 74 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS---CCSEEEEEECT-T------SCEEEEEEEECSSHHHHHHHHH-SCSEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC---CceEEEEEECC-C------CCCceEEEEEECCHHHHHHHHH-hCCcee
Confidence 35677899999999999999999999876 24444443321 1 1123579999999999999999 999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+. .-.|++|
T Consensus 75 ~gr-----~i~v~~a 84 (91)
T 2dgw_A 75 GGR-----YIEVFRE 84 (91)
T ss_dssp TTE-----EEEEEEE
T ss_pred CCc-----EEEEEEC
Confidence 432 4566665
No 89
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.011 Score=50.23 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=59.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+...|.|++||+.+|++++.+.+..+ +.|.....+..... .....-|||.|.+.+++....+.++|..|-
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWDMQT------GSSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEECTTT------CCEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEecCCC------CCcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 4567789999999999999999999875 34655555432211 111335999999999999999999999873
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
| ..-.|+||
T Consensus 156 ---g--~~i~v~~a 164 (166)
T 3md3_A 156 ---G--RPLRINWA 164 (166)
T ss_dssp ---T--EECEEEES
T ss_pred ---C--cEEEEEec
Confidence 2 34556665
No 90
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.71 E-value=0.0095 Score=52.92 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=60.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|.+||+.+|++++.+.+..+ +.|....++..+.. .....-|||.|.+.+++...++.++|+.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 140 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDY--GEIKNIHLNLDRRT------GFSKGYALVEYETHKQALAAKEALNGAEIM- 140 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------SSEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEEEecCCC------CcEeeEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 445689999999999999999999875 35655555433222 112356999999999999999999999883
Q ss_pred CCCCeeeeEEEeccC
Q 009733 85 EKGAQFKAIVEYAPS 99 (527)
Q Consensus 85 sKGne~~A~VEfAPY 99 (527)
| ....|+||--
T Consensus 141 --g--~~l~V~~a~~ 151 (165)
T 1rk8_A 141 --G--QTIQVDWCFV 151 (165)
T ss_dssp --T--EECEEEESEE
T ss_pred --C--EEEEEEEecC
Confidence 2 3567888743
No 91
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.70 E-value=0.0042 Score=52.31 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=59.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
....+|.|.+||+.+||+++.+.+..+ +.|.....+. . .-|||.|.+.+++...++.++|+.|.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~--G~v~~~~i~~---------~----g~afV~f~~~~~a~~Ai~~l~g~~~~g 78 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREA--GDVCYADVYR---------D----GTGVVEFVRKEDMTYAVRKLDNTKFRS 78 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGG--SCEEEEEECT---------T----SEEEEEESSHHHHHHHHHHHTTCBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEec---------C----CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356899999999999999999998865 3454433221 1 579999999999999999999999877
Q ss_pred CCCCeeeeEEEecc
Q 009733 85 EKGAQFKAIVEYAP 98 (527)
Q Consensus 85 sKGne~~A~VEfAP 98 (527)
.........|+.+.
T Consensus 79 r~~~~~~i~v~~~~ 92 (115)
T 3beg_B 79 HEGETAYIRVKVDG 92 (115)
T ss_dssp TTSCCCBCEEEECC
T ss_pred cEeeeEEEEeccCC
Confidence 66555555666543
No 92
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.70 E-value=0.0033 Score=50.31 Aligned_cols=81 Identities=17% Similarity=0.235 Sum_probs=56.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHH----HHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLL----ALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN 78 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~----e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd 78 (527)
...+..+|.|++||+.+|++++. +.+..+ +.|....... . .....-|||.|.+.++.....+.++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~~---~------~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVSR---S------LKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECCH---H------HHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEEc---C------CCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 45678899999999999999998 555443 3343333221 0 0012369999999999999999999
Q ss_pred CCeeEcCCCCeeeeEEEeccC
Q 009733 79 GHVFVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 79 G~vFvDsKGne~~A~VEfAPY 99 (527)
|+.|. | ....|+||--
T Consensus 73 g~~~~---g--~~l~v~~a~~ 88 (97)
T 1nu4_A 73 GFPFY---D--KPMRIQYAKT 88 (97)
T ss_dssp TCEET---T--EECEEEECSS
T ss_pred CCEEC---C--cEEEEEEccC
Confidence 99882 3 4567787743
No 93
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.68 E-value=0.0063 Score=48.47 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=54.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccC-CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~-gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+.+||+++.+.+..+-. ..+...... .......-|||.|.+.+++...++.++++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~---------~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN---------EKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC---------TTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC---------CCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 345689999999999999999998876421 011121111 0111134599999999999999999999987
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
.+ ....|++|
T Consensus 83 ~g-----r~l~v~~a 92 (95)
T 2ek1_A 83 GS-----RKVKLSGP 92 (95)
T ss_dssp TT-----EECEEECC
T ss_pred CC-----cEEEEEec
Confidence 43 24566665
No 94
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.67 E-value=0.011 Score=48.35 Aligned_cols=74 Identities=18% Similarity=0.302 Sum_probs=57.8
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 3 EPLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP-~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
.+.+..+|.|++||+ .+|++++.+.+..+ |.|...... -.-|||.|.+.+++....+.++|..
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~--G~v~~v~i~--------------~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------------NAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGG--SCEEEEEEC--------------SSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------------CCEEEEEECCHHHHHHHHHHcCCCE
Confidence 356788999999999 99999999999875 345444331 2369999999999999999999998
Q ss_pred eEcCCCCeeeeEEEec
Q 009733 82 FVNEKGAQFKAIVEYA 97 (527)
Q Consensus 82 FvDsKGne~~A~VEfA 97 (527)
|.+ ....|+||
T Consensus 82 ~~g-----~~l~V~~a 92 (97)
T 2xnq_A 82 NFG-----KKLILEVS 92 (97)
T ss_dssp ETT-----EECEEEEC
T ss_pred ECC-----EEEEEEec
Confidence 742 34567776
No 95
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0069 Score=49.01 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+....+|.|.+||+.+||+++.+.+..+ +.|....... + -.-|||.|.+.+++...++.++|+.|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~--G~i~~~~~~~---~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 89 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNF--GFILDFKHYP---E---------KGCCFIKYDTHEQAAVCIVALANFPFQ 89 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTT--SCCSEEEEET---T---------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhC--CCEEEEEEec---C---------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 4557899999999999999999998875 3454444431 1 235999999999999999999999875
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.64 E-value=0.0043 Score=50.25 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=57.8
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCC
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 87 (527)
++|.|.+||+.+||+++.+.+..+ +.|........ + -.-|||.|.+.+++....+.++|+.|.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~--~---------~g~afV~f~~~~~a~~A~~~l~g~~~~g~-- 65 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY--GPLRTVWIARN--P---------PGFAFVEFEDPRDAEDAVRGLDGKVICGS-- 65 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH--CCCSEEEEESS--S---------SSEEEEECSSHHHHHHHHHHHHHSCSSSC--
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeeC--C---------CCEEEEEECCHHHHHHHHHHHCCCeECCc--
Confidence 479999999999999999988875 34554444432 1 34699999999999999999999987432
Q ss_pred CeeeeEEEeccCCC
Q 009733 88 AQFKAIVEYAPSQR 101 (527)
Q Consensus 88 ne~~A~VEfAPYQK 101 (527)
...|++|--..
T Consensus 66 ---~l~V~~a~~~~ 76 (101)
T 2hvz_A 66 ---RVRVELSTGMP 76 (101)
T ss_dssp ---CCEEEESSSCC
T ss_pred ---EEEEEEccCCC
Confidence 36788875443
No 97
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.63 E-value=0.01 Score=51.57 Aligned_cols=86 Identities=15% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++....+.++|+.|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~v~~~~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 138 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYT------KESRGFAFVRFHDKRDAEDAMDAMDGAVLD 138 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHH--SCEEEEECCCCSSC------TTSCCEEEEEESBHHHHHHHHHHSTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEeecCCC------CccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3457899999999999999999999775 34544444332211 112346999999999999999999999874
Q ss_pred cCCCCeeeeEEEeccCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKv 102 (527)
+ ....|+||--++-
T Consensus 139 g-----~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 139 G-----RELRVQMARYGRP 152 (158)
T ss_dssp S-----SEEEEEEECCSSC
T ss_pred C-----eEEEEEECCCCCC
Confidence 3 3568888865543
No 98
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.63 E-value=0.016 Score=47.87 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 5 LQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 5 ~~r~KVVIRrLPP~-LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
....+|.|.+||+. +||+++.+.+..+- .|..... + -.-|||.|.+.+++...++.++|+.|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G--~v~~v~i-----~---------~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYG--RVAGCSV-----H---------KGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGS--CCSEEEE-----E---------TTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCC--CeEEEEE-----e---------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34589999999999 99999999998752 3333222 1 236999999999999999999999884
Q ss_pred cCCCCeeeeEEEeccCCC
Q 009733 84 NEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQK 101 (527)
+ ....|+||--.+
T Consensus 89 g-----~~l~V~~a~~~~ 101 (110)
T 1wf1_A 89 G-----QTLDINMAGEPK 101 (110)
T ss_dssp T-----EECCEEESCCCC
T ss_pred C-----eEEEEEECCCCC
Confidence 2 356788885433
No 99
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=96.62 E-value=0.014 Score=50.15 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=59.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
....+|.|++||+.+|++++.+.+..+ +.|........... ...-.-|||.|.+.++.....+.++|+.|.+
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSAT------GLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 163 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECTTT------CSEEEEEEEEESSTTHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecCCC------CCcceEEEEEeCCHHHHHHHHHHcCCCEECC
Confidence 446889999999999999999999875 45655555433222 1112359999999999999999999998832
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
..-.|+||
T Consensus 164 -----~~l~V~~A 171 (172)
T 2g4b_A 164 -----KKLLVQRA 171 (172)
T ss_dssp -----EECEEEEC
T ss_pred -----eEEEEEeC
Confidence 34566665
No 100
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.61 E-value=0.0088 Score=46.91 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=56.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
..+|.|++||+.+||+++.+.+..+ +.|........... .....-|||.|.+.+++.... .++|+.|.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-- 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC--GSVNRVTILCDKFS------GHPKGFAYIEFSDKESVRTSL-ALDESLFRG-- 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG--CCEEEEEEEESCSS------SSCCEEEEEEESSTHHHHHHG-GGTTCEETT--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEecCCC------CCcceEEEEEECCHHHHHHHH-hcCCCEECC--
Confidence 4689999999999999999999875 34655555432222 112356999999999999988 999998743
Q ss_pred CCeeeeEEEec
Q 009733 87 GAQFKAIVEYA 97 (527)
Q Consensus 87 Gne~~A~VEfA 97 (527)
....|++|
T Consensus 75 ---~~l~V~~a 82 (89)
T 3ucg_A 75 ---RQIKVIPK 82 (89)
T ss_dssp ---EECEEEET
T ss_pred ---cEEEEEEc
Confidence 23566665
No 101
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.59 E-value=0.0047 Score=49.41 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=56.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|.|++||+.+||+++.+.+..+ +.|... . .....-.-|||.|.+.+++....+.++|+.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~--g~v~~~-~----------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-S----------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSE--EEECCE-E----------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhC--CcEEEe-C----------CCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45567899999999999999999988874 223222 1 1111234699999999999999999999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
. | ....|++|
T Consensus 79 ~---g--~~l~v~~a 88 (96)
T 1fjc_A 79 D---G--RSVSLYYT 88 (96)
T ss_dssp T---T--EEEEEEEC
T ss_pred C---C--eEEEEEEc
Confidence 3 2 24677776
No 102
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.014 Score=48.22 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=56.0
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++...+ .++|+.|.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 93 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAV--GKVRDVRIISDRNS------RRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-- 93 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCSCCS------SSCCCCEEEEESCGGGHHHHH-HHTTEEETT--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC--CCEeEEEEEecCCC------CccCcEEEEEeCcHHHHHHHH-HcCCCEeCC--
Confidence 4689999999999999999998764 34555444432211 111235999999999999999 999998832
Q ss_pred CCeeeeEEEec
Q 009733 87 GAQFKAIVEYA 97 (527)
Q Consensus 87 Gne~~A~VEfA 97 (527)
....|++|
T Consensus 94 ---~~l~V~~a 101 (114)
T 2cq4_A 94 ---VPIIVQAS 101 (114)
T ss_dssp ---EEEEEEEH
T ss_pred ---eEEEEEec
Confidence 34667765
No 103
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.54 E-value=0.016 Score=46.83 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCCCceEEEecCCCCCCHHHHH----HHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCC
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLL----ALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNG 79 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~----e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG 79 (527)
..+.++|.|.+||+.+||+++. +.+..+ +.|.....+..+.. -..|||.|.+.+++..-++.++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~~---------rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTDY---------QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCST---------TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCCC---------CeEEEEEECCHHHHHHHHHHhCC
Confidence 4578899999999999999999 555543 34554444321111 33599999999999999999999
Q ss_pred CeeEcCCCCeeeeEEEecc
Q 009733 80 HVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 80 ~vFvDsKGne~~A~VEfAP 98 (527)
+.|.+ ....|++|-
T Consensus 75 ~~~~g-----r~l~V~~a~ 88 (96)
T 2dgx_A 75 YKIGS-----KKILVSLAT 88 (96)
T ss_dssp EEETT-----EEEEEEECC
T ss_pred CEECC-----eEEEEEEcC
Confidence 98742 356788873
No 104
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0087 Score=48.35 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=59.4
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 3 EPLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP-~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
...+..+|.|.+||+ .+||+++.+.+..+ +.|...... -.-|||.|.+.+++....+.++|..
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~--------------~g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPY--GHIMQINIK--------------NAFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTT--CCCCEEEEE--------------TTEEEEEESCHHHHHHHHHHHTCSS
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEe--------------CCEEEEEECCHHHHHHHHHHcCCCe
Confidence 456788999999999 99999999999875 334433331 2369999999999999999999998
Q ss_pred eEcCCCCeeeeEEEeccCCCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQKvP 103 (527)
|.+. ...|++|.-..-+
T Consensus 70 ~~g~-----~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 70 NFGK-----KLILEVSSSNARP 86 (96)
T ss_dssp CBTT-----TBCEEEEECCCC-
T ss_pred eCCc-----EEEEEEcCcCCCC
Confidence 8643 3578887544433
No 105
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=96.51 E-value=0.018 Score=50.69 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=59.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|++||+.+|++++.+.+..+ +.|........... .....-|||.|.+.++.....+.++|+.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~- 182 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDSAT------GLSKGYAFCEYVDINVTDQAIAGLNGMQLG- 182 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECTTT------CSEEEEEEEEESSSSHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecCCC------CCcceEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 567899999999999999999999875 34555554432211 112446999999999999999999999882
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
| ....|+||
T Consensus 183 --g--~~l~v~~a 191 (198)
T 2yh0_A 183 --D--KKLLVQRA 191 (198)
T ss_dssp --T--EECEEEES
T ss_pred --C--EEEEEEEC
Confidence 2 34567776
No 106
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.51 E-value=0.0088 Score=49.80 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCCCceEEEecCCCCCCHHHHH---HHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLL---ALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~---e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
..+..+|.|.+||+.+||++++ +.+..+ +.|.....+..+... .......-|||.|.+.+++...++.++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~--G~i~~v~i~~~~~~~---~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKF--GKIHKVVINNSTSYA---GSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTT--SCEEEEEEECCSSCC---SSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhcc--CCEEEEEEecCCCcC---ccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 4567899999999999999998 666653 345555544322110 01122357999999999999999999999
Q ss_pred eeEcCCCCeeeeEEEecc
Q 009733 81 VFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 81 vFvDsKGne~~A~VEfAP 98 (527)
.|. | ....|+||-
T Consensus 87 ~~~---g--r~l~V~~a~ 99 (111)
T 2cpi_A 87 VVD---G--RTLKASLGT 99 (111)
T ss_dssp EET---T--EEEEEESCC
T ss_pred EEC---C--EEEEEEecc
Confidence 873 2 256778774
No 107
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.016 Score=49.10 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred eEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCCC
Q 009733 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGA 88 (527)
Q Consensus 9 KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGn 88 (527)
+|.|++||+.+||+++.+.+..+ |.|....++..+.. ....-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---- 68 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVG--GPIANIKIMIDKNN-------KNVNYAFVEYHQSHDANIALQTLNGKQIEN---- 68 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGG--SCEEEEEEECCCC--------CCEEEEEEEESSHHHHHHHHHHHTTCEETT----
T ss_pred EEEECCCCCcCCHHHHHHHHHhc--CCeEEEEEEECCCC-------CCCCEEEEEeCCHHHHHHHHHHcCCCccCC----
Confidence 68999999999999999999875 35665555533211 123469999999999999999999998832
Q ss_pred eeeeEEEeccCC
Q 009733 89 QFKAIVEYAPSQ 100 (527)
Q Consensus 89 e~~A~VEfAPYQ 100 (527)
....|+++.-.
T Consensus 69 -~~i~v~~~~~~ 79 (166)
T 3md3_A 69 -NIVKINWAFQS 79 (166)
T ss_dssp -EECEEEECCCC
T ss_pred -CeeEEEEcCCC
Confidence 34567776443
No 108
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.48 E-value=0.0083 Score=54.78 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=61.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+.++|.|.+||+.+||+++.+.+..+ +.|.....+... . ...-.-|||.|.+.+++...++.++|+.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~d~-~------g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF--GTLKKAAVDYDR-S------GRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT--SCCSEEEECCCT-T------SSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECC-C------CCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 4457899999999999999999988864 234433333221 1 111346999999999999999999999874
Q ss_pred cCCCCeeeeEEEeccCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKv 102 (527)
+ ....|+||.-...
T Consensus 156 G-----r~l~V~~a~~~~~ 169 (177)
T 2f3j_A 156 G-----RPMDIQLVASQID 169 (177)
T ss_dssp S-----SBCEEEEESSGGG
T ss_pred C-----EEEEEEEecCCCC
Confidence 3 3467888865544
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.46 E-value=0.0083 Score=48.44 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=56.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+....+|.|.+||+.+||+++.+.+..+- .|. ...+.|. ...-|||.|.+.+++...++.++|..|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G--~v~-~~~~~~~----------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELG--SVP-LRLTWQG----------PRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTT--CCC-SEEEEET----------TTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcC--CEE-EEEEcCC----------CCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34478999999999999999999887652 232 1222221 1235999999999999999999999875
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
+. ...|++|
T Consensus 83 g~-----~l~V~~a 91 (97)
T 2e5j_A 83 TD-----TLRVALA 91 (97)
T ss_dssp SS-----CCEEEEC
T ss_pred Cc-----EEEEEEc
Confidence 32 3667776
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.46 E-value=0.0061 Score=52.28 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=58.4
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 2 KEPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 2 k~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
+.|...++|.|++||+..||+++.+.+...-. .|.+.....++ ...-|||.|.+.+++..-++.++|..
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~----------~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRD----------FDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCS----------SSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCC----------CCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 35778899999999999999999998876520 34443321111 13469999999999999999999988
Q ss_pred eEcCCCCeeeeEEEecc
Q 009733 82 FVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 82 FvDsKGne~~A~VEfAP 98 (527)
|.+. .-.|++|-
T Consensus 92 l~Gr-----~i~V~~a~ 103 (111)
T 2jvr_A 92 FRGS-----VITVERDD 103 (111)
T ss_dssp ETTE-----EEEEEESC
T ss_pred ECCe-----EEEEEECC
Confidence 7432 35677763
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.46 E-value=0.0055 Score=46.89 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=47.9
Q ss_pred eEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 9 KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
||.|.+||+.+|++++.+.+... +.|........+.. .....-|||.|.+.+++....+ ++++.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g 67 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF--GKVDDAMLMFDKTT------NRHRGFGFVTFESEDIVEKVCE-IHFHEINN 67 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT--SCCSEECCCBCSSS------TTSCBEEEEECSCHHHHHHHHS-SSCCCSSS
T ss_pred CEEEecCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCC------CCcCcEEEEEECCHHHHHHHHH-CCCCEECC
Confidence 68999999999999999988875 33444333322211 1123469999999999988876 88887743
No 112
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.43 E-value=0.0069 Score=52.70 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++...++.++|+.|.
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~------g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~ 115 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKY--GRVGDVYIPRDRYT------KESRGFAFVRFHDKRDAEDAMDAMDGAVLD 115 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGG--SCCSEEECCCCSSS------SSCCSCCEEECSCHHHHHHHHTTTTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999999999999875 24544444322211 111235999999999999999999999875
Q ss_pred cCCCCeeeeEEEeccCCCCCC
Q 009733 84 NEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 84 DsKGne~~A~VEfAPYQKvPk 104 (527)
+. ...|++|--++-+.
T Consensus 116 g~-----~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 116 GR-----ELRVQMARYGRPPD 131 (135)
T ss_dssp SS-----CCEEEECCCCCCCT
T ss_pred CE-----EEEEEECCCCCCCc
Confidence 32 56888886655544
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.0073 Score=50.54 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=55.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCc-eeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRY-NWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkv-dw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+.+||+++.+.+..+ +.| .....+..+ . .+ .-.-|||.|.+.+++...++. +++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~v~i~~d~-~----g~--~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI--PVDENAVHVLVDN-N----GQ--GLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS--CCCSTTEEECCCT-T----SS--CSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC--CCcCCeEEEEECC-C----CC--cceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 5678899999999999999999999875 344 333333222 1 11 123599999999999988877 87666
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+ ....|++|-
T Consensus 82 ~g-----r~i~v~~a~ 92 (114)
T 2cpy_A 82 NG-----REAFVHVVT 92 (114)
T ss_dssp TT-----EEEEEEEEC
T ss_pred CC-----eEEEEEECC
Confidence 32 235666663
No 114
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=96.43 E-value=0.014 Score=45.84 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++....+. +++.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~-~~~~~ 77 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKF--GEVVDCTIKMDPNT------GRSRGFGFILFKDAASVEKVLDQ-KEHRL 77 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTT--SCEEEEEEEECTTT------CCEEEEEEEEESSTHHHHHHHHS-SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCC------CccccEEEEEECCHHHHHHHHHh-CCCEE
Confidence 46678899999999999999999999765 45655555433222 11234599999999999988865 55543
No 115
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=96.43 E-value=0.012 Score=50.84 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=58.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCce---------eEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHH
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN---------WFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFA 74 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvd---------w~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~ 74 (527)
..+..+|.|++||+.+||+++.+.+..+- .|. ......|+ ...-|||.|.+.+++...+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~~~~~~~~di~~~~~g~----------~~g~afV~f~~~~~A~~Ai 109 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYV--DFSSETQRIMFDIRLMKEGR----------MKGQAFIGLPNEKAAAKAL 109 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGC--CTTCHHHHHHCEEEEEEETT----------TEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcccccccceeeEEeccCCC----------cccEEEEEeCCHHHHHHHH
Confidence 45778999999999999999999988752 221 11111121 2457999999999999999
Q ss_pred HHhCCCeeEcCCCCeeeeEEEeccC
Q 009733 75 ELLNGHVFVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 75 d~fdG~vFvDsKGne~~A~VEfAPY 99 (527)
+.++|+.|. | ....|+||-.
T Consensus 110 ~~lng~~~~---g--~~l~V~~a~~ 129 (143)
T 3egn_A 110 KEANGYVLF---G--KPMVVQFARS 129 (143)
T ss_dssp HHHTTBEET---T--EECEEEECCC
T ss_pred HHhCCCEeC---C--cEEEEEECCC
Confidence 999999983 2 3567888843
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=96.37 E-value=0.0061 Score=48.70 Aligned_cols=72 Identities=17% Similarity=0.073 Sum_probs=49.7
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
+.+|.|++||+.+||+++.+.+..+-...|.....+..+.. ...-.-|||.|.+.+++....+.++|+.|..
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~------g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g 72 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN------GQSKGFALVGVGSEASSKKLMDLLPKRELHG 72 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT------CCEEEEEEECC-CHHHHHHHHHHGGGSCSSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC------CccCcEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 46899999999999999999887652113544444432221 1113459999999999999999999998743
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.37 E-value=0.012 Score=46.80 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=57.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCC-Ce
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNG-HV 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG-~v 81 (527)
.+.+..+|.|.+||+.+||+++.+.+..+-. -+...... + ..-|||.|.+.+++...++.++| +.
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-vv~~~~~~----~---------~g~afV~f~~~~~A~~A~~~l~g~~~ 69 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKL-PLAGQVLL----K---------SGYAFVDYPDQNWAIRAIETLSGKVE 69 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTC-CCSSCEEE----E---------TTEEEECCSCHHHHHHHHHHHTTTCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCC-ceEEEEEc----C---------CCEEEEEECCHHHHHHHHHHccCCee
Confidence 4567789999999999999999998876521 02111110 1 23699999999999999999999 77
Q ss_pred eEcCCCCeeeeEEEecc
Q 009733 82 FVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 82 FvDsKGne~~A~VEfAP 98 (527)
|. | ....|++|-
T Consensus 70 ~~---g--~~l~v~~a~ 81 (93)
T 2cqh_A 70 LH---G--KIMEVDYSV 81 (93)
T ss_dssp ET---T--EECEEEECC
T ss_pred EC---C--EEEEEEEcc
Confidence 63 2 456788874
No 118
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.37 E-value=0.025 Score=50.40 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
...+|.|++||+.+|++++.+.+..+ +.|....++..+.. .....-|||.|.+.++.....+.++|+.|-+
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~------g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g- 194 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDPTT------GKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG- 194 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecCCC------CCcCceEEEEecCHHHHHHHHHHccCCEeCC-
Confidence 45789999999999999999999875 45766666543222 1113359999999999999999999998732
Q ss_pred CCCeeeeEEEeccCCCCC
Q 009733 86 KGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 86 KGne~~A~VEfAPYQKvP 103 (527)
....|+||--...|
T Consensus 195 ----~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 195 ----QYLRVGKAVTPPMP 208 (216)
T ss_dssp ----SBCEEEECSSCSST
T ss_pred ----cEEEEEEecCCCCC
Confidence 24678887655443
No 119
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.34 E-value=0.011 Score=52.83 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
+..+|.|++||+.+||+++.+.+..+ +.|....++.-+.. .....-|||.|.+.+++....+.+++..|.+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 97 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPF--GPIKSIDMSWDSVT------MKHKGFAFVEYEVPEAAQLALEQMNSVMLGG 97 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEECCC-CC-------CCCSEEEEEESSHHHHHHHHHHHSSCCCC-
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhC--CCEEEEEEeecCCC------CccCceEEEEeCCHHHHHHHHHHccCCeeCC
Confidence 34689999999999999999999875 35655555432211 1123469999999999999999999988743
No 120
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.31 E-value=0.0092 Score=52.20 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=55.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccC--CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~--gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+..+|.|++||+.+|++++.+.|...|. |.|....... . .+ .-..|||.|.+.++....++.++|+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~----~~--~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---S----DD--NSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---C----CS--SCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---C----CC--cCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 45789999999999999987654443331 3443322211 1 01 124599999999999999999999987
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+. .-.|+||-
T Consensus 98 ~gr-----~l~V~~a~ 108 (127)
T 2a3j_A 98 QGN-----PLVITFSE 108 (127)
T ss_dssp TTS-----CCEEEECC
T ss_pred CCC-----EEEEEEcc
Confidence 543 45788874
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.015 Score=48.20 Aligned_cols=79 Identities=14% Similarity=0.045 Sum_probs=56.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++...++. +++.|.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g- 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQW--GKLTDCVVMRDPAS------KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG- 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSS--CCCSEEEEECCTTT------SSCCSEEEEECSSHHHHHHHHTS-CSEEETT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEECCCC------CCcCceEEEEeCCHHHHHHHHHh-CCcEECC-
Confidence 34789999999999999999998764 34555555433222 11234699999999999999888 8777632
Q ss_pred CCCeeeeEEEecc
Q 009733 86 KGAQFKAIVEYAP 98 (527)
Q Consensus 86 KGne~~A~VEfAP 98 (527)
....|++|-
T Consensus 96 ----~~l~V~~a~ 104 (116)
T 1x4b_A 96 ----RVVEPKRAV 104 (116)
T ss_dssp ----EEEEEECCS
T ss_pred ----EEEEEEECC
Confidence 356777764
No 122
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.28 E-value=0.023 Score=46.39 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC--CCe
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN--GHV 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd--G~v 81 (527)
..+..+|.|.+||+.+||+++.+.+..+-. .|.....+.-.. .....-.-|||.|.+.+++...++.++ ++.
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~-~v~~v~i~~~~~-----~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTE-GVLDVIVYASAA-----DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHST-TEEEEECCSSSC-----TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcC-CceEEEEEccCC-----CCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 456789999999999999999998887521 144444431111 111223579999999999999999996 455
Q ss_pred eEcCCCCeeeeEEEeccCCCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQKvP 103 (527)
|.+ ....|+||--+..+
T Consensus 79 ~~g-----~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 79 LWG-----HQIAVDWAEPEIDV 95 (109)
T ss_dssp BTT-----BCCEEEESCSSCST
T ss_pred ecC-----CeEEEEEcCCCCCc
Confidence 533 24688988655544
No 123
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.26 E-value=0.024 Score=52.50 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP-~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+ .+||+++.+.+..+ +.|....++..+ ..-|||.|.+.+++....+.++|..|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~--G~i~~v~i~~~~-----------~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-----------KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHH--TCEEEEEECCTT-----------SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhC--CCeEEEEEEECC-----------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45678999999999 99999999998865 345555554321 22499999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKv 102 (527)
.+ ....|++|..+..
T Consensus 98 ~g-----~~l~v~~a~~~~~ 112 (229)
T 2adc_A 98 HG-----KPIRITLSKHQNV 112 (229)
T ss_dssp SS-----SBCEEECCSCCCC
T ss_pred CC-----eEEEEEEecCccc
Confidence 43 3567888866544
No 124
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.019 Score=46.04 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=54.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
.....+|.|.+||+.+||+++.+.+..+ +.|... ... +.. .. -|||.|.+.+++...++ ++|+.|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v-~~~-~~~-----g~----~afV~f~~~~~a~~ai~-l~g~~~~ 70 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAF--GPVASV-VMD-KDK-----GV----FAIVEMGDVGAREAVLS-QSQHSLG 70 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGT--SCEEEE-EEC-SSS-----CC----EEEEEESSHHHHHHHHT-CSCCEET
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhc--CCeEEE-EEc-CCC-----Cc----EEEEEECCHHHHHHHHh-cCCeEEC
Confidence 3455699999999999999999999865 334432 111 111 11 89999999999999999 9999875
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+. ...|++|.
T Consensus 71 g~-----~l~V~~a~ 80 (94)
T 2e5g_A 71 GH-----RLRVRPRE 80 (94)
T ss_dssp TE-----ECCCBCSC
T ss_pred CE-----EEEEEECC
Confidence 32 34556554
No 125
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.19 E-value=0.029 Score=47.24 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=60.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe-e
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV-F 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v-F 82 (527)
..+..+|.|++||+.+||+++.+.+.++ |.|.....+++ -.-|||.|.+.++...-++.+++.. .
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF--GTICYVMMMPF------------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT--SCEEEEEEETT------------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEECC------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 3456789999999999999999999875 45665554432 1369999999999999988887653 2
Q ss_pred EcCCCCeeeeEEEeccCCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKvP 103 (527)
++. ....|+||-.+.+-
T Consensus 78 i~G----r~l~V~~a~~~~~~ 94 (104)
T 1wex_A 78 IAG----QQAFFNYSTSKRIT 94 (104)
T ss_dssp SSS----SBCEEEECSSSSCC
T ss_pred ECC----EEEEEEEccCcccc
Confidence 222 24679998766543
No 126
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.17 E-value=0.014 Score=50.75 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|.+||+.+||+++.+.+..+ +.|.....+.. + -.-|||.|.+.++.....+.++|+.|.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~--~---------~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYY--GPLRSVWVARN--P---------PGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHH--SCEEEEEECSS--S---------CSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEeeC--C---------CcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4567899999999999999999999875 34555444321 1 347999999999999999999999873
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|+||-
T Consensus 137 g-----~~l~v~~a~ 146 (150)
T 2i2y_A 137 G-----CRVRVELSN 146 (150)
T ss_dssp S-----SCCEEEECC
T ss_pred C-----eEEEEEEcC
Confidence 2 245677763
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.12 E-value=0.063 Score=43.45 Aligned_cols=84 Identities=11% Similarity=0.130 Sum_probs=57.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+..+..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++...++ +++.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~--~~~~~ 80 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTF--GEVLMVQVKKDLKT------GHSKGFGFVRFTEYETQVKVMS--QRHMI 80 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGG--SCEEEEEEEECSSS------CSEEEEEEEEESSHHHHHHHHH--SCEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCeEEEEEEecCCC------CCccceEEEEECCHHHHHHHHH--cCCee
Confidence 45677899999999999999999999875 34544444432221 1123469999999999988877 34433
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
. | ....|++|--..
T Consensus 81 ~---g--~~l~v~~a~~~~ 94 (103)
T 2cqg_A 81 D---G--RWCDCKLPNSKQ 94 (103)
T ss_dssp T---T--EEEEEECCCTTC
T ss_pred C---C--eEEEEEecCCCC
Confidence 2 2 346778775443
No 128
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.09 E-value=0.013 Score=44.66 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=48.2
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++|.|++||+.+||+++.+.+... +.|........+.. .....-|||.|.+.+++....+.++ +.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~a~~~~~-~~~ 66 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLT------KRSRGFGFVTFMDQAGVDKVLAQSR-HEL 66 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT--SCCCCEEEECCCCS------SSCSSEEEECCCCTTHHHHHHHTTT-CCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEecCCCC------CCcCceEEEEEcCHHHHHHHHHhCC-Ccc
Confidence 478999999999999999988875 33444444432221 1123479999999999999999887 554
No 129
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=96.07 E-value=0.017 Score=50.02 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+|++++.+.+... +.|... .. ....-.-|||.|.+.++.....+.++|+.|.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~-----~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV-----SQ------DGKSKGIAYIEFKSEADAEKNLEEKQGAEID 162 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE-----CS------SSSCCSEEEEECSSHHHHHHHHHHHTEEEET
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe-----cC------CCCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3456899999999999999999999874 344332 11 1112346999999999999999999998874
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
+ ..-.|+||
T Consensus 163 g-----~~i~v~~a 171 (175)
T 1fje_B 163 G-----RSVSLYYT 171 (175)
T ss_dssp T-----EEEEEEEC
T ss_pred C-----eEEEEEec
Confidence 2 34677777
No 130
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=95.99 E-value=0.012 Score=48.09 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCC-CCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGK-SSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK-~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+....+|.|++||+.+||+++.+.+..+ + |.....+..+ .. ...-.-|||.|.+.+++.... .++|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G-i~~v~i~~~~~~~------g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL--N-ISAVRLPREPSNP------ERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS--C-EEEEECSCCTTTT------CCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc--C-CeEEEEEecCCcC------CccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 4567899999999999999999999875 4 6555554322 11 111236999999999999999 8999987
Q ss_pred Ec
Q 009733 83 VN 84 (527)
Q Consensus 83 vD 84 (527)
.+
T Consensus 86 ~g 87 (100)
T 2j76_E 86 GN 87 (100)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 131
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.96 E-value=0.042 Score=48.80 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCceEEEecCCC-CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLPP-~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
...+|.|++||+ .+||+++.+.+..+ |.|....++..+ ..-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~--G~i~~v~i~~~~-----------~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVY--GDVQRVKILFNK-----------KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTT--CCCSEEECSTTC-----------SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhc--CCEEEEEEEeCC-----------CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 357899999999 99999999999865 335444443211 2359999999999999999999998833
Q ss_pred CCCCeeeeEEEeccCCC
Q 009733 85 EKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 85 sKGne~~A~VEfAPYQK 101 (527)
....|++|..+.
T Consensus 69 -----~~l~v~~a~~~~ 80 (198)
T 1qm9_A 69 -----KPIRITLSKHQN 80 (198)
T ss_dssp -----CCCEEEECCCCS
T ss_pred -----eEEEEEEecCCC
Confidence 346788876554
No 132
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.95 E-value=0.023 Score=59.07 Aligned_cols=82 Identities=10% Similarity=0.102 Sum_probs=60.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|.+||+.+|+++|.+.|..+ +.|....++..+.. ...-.-|||.|.+.+++...++.++|+.|.+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~--G~I~~v~i~~d~~t------g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g- 171 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVY--GPIKRIHMVYSKRS------GKPRGYAFIEYEHERDMHSAYKHADGKKIDG- 171 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEeeccCCC------CCccceEEEeeccHHHHHHHHHHcCCCEECC-
Confidence 45799999999999999999988874 34555444432222 1123469999999999999999999998832
Q ss_pred CCCeeeeEEEeccCC
Q 009733 86 KGAQFKAIVEYAPSQ 100 (527)
Q Consensus 86 KGne~~A~VEfAPYQ 100 (527)
....|+||--.
T Consensus 172 ----r~i~V~~a~~~ 182 (437)
T 3pgw_S 172 ----RRVLVDVERGR 182 (437)
T ss_pred ----EEEEEEEeCCC
Confidence 35678888643
No 133
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.94 E-value=0.025 Score=49.70 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=57.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|++||+.+||+++.+.+..+ +.|.....+.-+.. .....-|||.|.+.+++....+. +++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~A~~A~~~-~~~~~ 79 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQW--GTLTDCVVMRDPNT------KRSRGFGFVTYATVEEVDAAMNA-RPHKV 79 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHT-CSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEEcCCC------CCccceEEEEeCCHHHHHHHHhc-CCCEE
Confidence 35677899999999999999999999875 34555555432211 11234699999999999998876 66655
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
.+ ....|+++.
T Consensus 80 ~g-----~~l~v~~~~ 90 (196)
T 1l3k_A 80 DG-----RVVEPKRAV 90 (196)
T ss_dssp TT-----EECEEEECC
T ss_pred CC-----EEeeeeccc
Confidence 22 234566654
No 134
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.93 E-value=0.029 Score=52.72 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=59.6
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+...|.|++||+.+|++++.+.+..+ +.|....+++++ ..-|||.|.+.++.....+.++|+.|.+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~~- 271 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVPGR-----------HDIAFVEFDNEVQAGAARDALQGFKITQ- 271 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEecCC-----------CcEEEEEeCCHHHHHHHHHHcCCcEeCC-
Confidence 56789999999999999999999875 456666665432 2479999999999999999999988873
Q ss_pred CCCeeeeEEEec
Q 009733 86 KGAQFKAIVEYA 97 (527)
Q Consensus 86 KGne~~A~VEfA 97 (527)
| ..-.|+||
T Consensus 272 -g--~~l~v~~a 280 (282)
T 3pgw_A 272 -N--NAMKISFA 280 (282)
T ss_pred -C--CEEEEEEe
Confidence 2 24566665
No 135
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=95.92 E-value=0.016 Score=45.27 Aligned_cols=68 Identities=9% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhcccc--CC-------CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHH
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFA 74 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~--~g-------kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~ 74 (527)
..+..+|.|.+||+.+||+++.+.+.... .+ .+........ -.-|||.|.+.+++....
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------------SSEEEEEESSHHHHHHHG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------------CcEEEEEcCCHHHHHHHH
Confidence 34668999999999999999998887651 12 3433333210 346999999999999999
Q ss_pred HHhCCCeeEc
Q 009733 75 ELLNGHVFVN 84 (527)
Q Consensus 75 d~fdG~vFvD 84 (527)
.++|+.|.+
T Consensus 71 -~l~g~~~~g 79 (87)
T 2hzc_A 71 -AFDGIIFQG 79 (87)
T ss_dssp -GGTTCEETT
T ss_pred -hcCCCEECC
Confidence 999998743
No 136
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.91 E-value=0.041 Score=46.99 Aligned_cols=81 Identities=21% Similarity=0.333 Sum_probs=62.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee-
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF- 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF- 82 (527)
..|...|-|++||+..||+++.+.+.+. |.|.....++.+ .-|+|.|.+.++...-.+.+++..+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f--G~V~~v~i~~~k------------g~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF--GPISYVVVMPKK------------RQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEETTT------------TEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHhcCCCce
Confidence 4567789999999999999999999885 467666555321 3699999999999999999998753
Q ss_pred EcCCCCeeeeEEEeccCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKv 102 (527)
++.+ +..|+||=.+.+
T Consensus 84 i~Gr----~i~V~~S~~k~l 99 (100)
T 3r27_A 84 IAGH----PAFVNYSTSQKI 99 (100)
T ss_dssp ETTE----EEEEEECSCSCC
T ss_pred eCCc----EEEEEecccccc
Confidence 3332 568888865543
No 137
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=95.84 E-value=0.013 Score=46.31 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred ceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCC
Q 009733 8 TKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKG 87 (527)
Q Consensus 8 ~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKG 87 (527)
.+|.|.+||+.+||+++.+.+... +.|........+.. ...-.-|||.|.+.+ ....++.++|+.|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-- 70 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF--GKVFNVKLIYDRET------KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-- 70 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH--TCCSEEEECCCSSS------CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc--CCEEEEEEEEcCCC------CCcceEEEEEECCHH-HHHHHHHhCCCEECCe--
Confidence 479999999999999998887764 34544444332221 112356999999999 9999999999987533
Q ss_pred CeeeeEEEeccCC
Q 009733 88 AQFKAIVEYAPSQ 100 (527)
Q Consensus 88 ne~~A~VEfAPYQ 100 (527)
...|++|.-.
T Consensus 71 ---~l~V~~a~~~ 80 (90)
T 2ki2_A 71 ---TIRVTEANPK 80 (90)
T ss_dssp ---SCSEEEC---
T ss_pred ---EEEEEEcCCC
Confidence 3566666443
No 138
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.84 E-value=0.058 Score=45.26 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCC--Ce
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNG--HV 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG--~v 81 (527)
..+..+|.|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++....++.+++ ..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f--G~v~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF--GKVTNILMLKG------------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT--SCEEEEEEETT------------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEECC------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 4566789999999999999999888875 45655444432 24699999999999988887754 33
Q ss_pred eEcCCCCeeeeEEEeccCCCCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQKvPk 104 (527)
|. | ....|+||-.+.+-.
T Consensus 78 ~~---G--r~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 78 LR---N--QPIYIQYSNHKELKT 95 (101)
T ss_dssp ET---T--EECEEEECSCSSCCC
T ss_pred EC---C--cEEEEEEcCcccCcC
Confidence 32 2 356799997665543
No 139
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.77 E-value=0.032 Score=47.96 Aligned_cols=83 Identities=12% Similarity=0.284 Sum_probs=62.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCC--C
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNG--H 80 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG--~ 80 (527)
.+.+..+|-|++||+.+||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++...-++.+++ .
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~f--G~V~~v~i~~~------------kGfaFVeF~~~~~A~~Ai~~l~~~~~ 77 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------------KNQAFIEMNTEEAANTMVNYYTSVTP 77 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHH--CCEEEEEEETT------------TTEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEcC------------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 36788999999999999999999999875 45666555542 14599999999999999998875 3
Q ss_pred eeEcCCCCeeeeEEEeccCCCCCC
Q 009733 81 VFVNEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 81 vFvDsKGne~~A~VEfAPYQKvPk 104 (527)
.| + | ....|+||-.+.+..
T Consensus 78 ~l-~--G--r~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 78 VL-R--G--QPIYIQFSNHKELKT 96 (105)
T ss_dssp EE-T--T--EECCBCCCSSSSCCC
T ss_pred eE-C--C--EEEEEEEcCCCCCCc
Confidence 44 2 2 256688886655544
No 140
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=95.76 E-value=0.038 Score=51.93 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhcccc--CCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHF--NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~--~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
...+..+|.|++||+.+||+++.+.|..++ -+.|....... . .+ .-.-|||.|.+.++.....+.++|.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~----~~--~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---S----LK--MRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---C----CC--cceEEEEEECCHHHHHHHHHHhcCC
Confidence 356788999999999999999664443333 13454433332 1 11 1246999999999999999999998
Q ss_pred eeEcCCCCeeeeEEEec
Q 009733 81 VFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 81 vFvDsKGne~~A~VEfA 97 (527)
.|.+ ....|+||
T Consensus 76 ~~~g-----~~l~v~~a 87 (282)
T 3pgw_A 76 PFYD-----KPMRIQYA 87 (282)
T ss_pred eeCC-----cEEEEEEe
Confidence 8854 34678887
No 141
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.75 E-value=0.043 Score=47.83 Aligned_cols=84 Identities=15% Similarity=0.267 Sum_probs=63.3
Q ss_pred CCCceEEEec--CCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 5 LQRTKVVIRH--LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 5 ~~r~KVVIRr--LPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+..+|.|++ ||..+||+++.+.+..+ |.|......++ -.-|||.|.+.++...-++.++|+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~f--G~v~~v~i~~~------------rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN------------KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHH--SCEEEEECCTT------------CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567799955 99999999999999876 34655444322 13699999999999999999999998
Q ss_pred EcCCCCeeeeEEEeccCCCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRVPK 104 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKvPk 104 (527)
.+.-|.-.+..|.||- .+|-
T Consensus 89 ~~~lg~g~~l~v~~a~--~~p~ 108 (114)
T 2cq2_A 89 VDDLGQKITLYLNFVE--KVQW 108 (114)
T ss_dssp ECTTSCEEECEEEEES--CCCC
T ss_pred ccccCCCcEEEEEecc--cCcc
Confidence 5555555666778774 4444
No 142
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.74 E-value=0.029 Score=47.37 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCce---eEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN---WFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvd---w~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
+.+..+|.|++||+.+||+++.+.+..+- .|. ...... . ...-.-|||.|.+.+++...++ ++++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~~~~~~~~~---~------g~~~G~afV~F~~~~~a~~Al~-~~g~ 89 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLD--IVEDSIYIAYGP---N------GKATGEGFVEFRNEADYKAALC-RHKQ 89 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSC--BCTTTCEEEECT---T------SSEEEEEEEEBSSSHHHHHHHT-SCSB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC--CccceEEEEECC---C------CCCCeEEEEEECCHHHHHHHHH-hCCC
Confidence 45678999999999999999999887642 221 111111 0 1113469999999999999888 8887
Q ss_pred eeEcCCCCeeeeEEEec
Q 009733 81 VFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 81 vFvDsKGne~~A~VEfA 97 (527)
.|.+- ...|++|
T Consensus 90 ~~~gr-----~i~V~~a 101 (124)
T 1wel_A 90 YMGNR-----FIQVHPI 101 (124)
T ss_dssp CSTTS-----CBEEEEE
T ss_pred eECCc-----EEEEEEC
Confidence 76432 3456555
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=95.74 E-value=0.02 Score=47.89 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=57.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
..+|.|++||+.+||+++.+.+..+ +.|.....+..+.. .....-|||.|.+.+++.... .++|+.|.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-- 104 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSC--GSINRITILCDKFS------GHPKGYAYIEFAERNSVDAAV-AMDETVFRG-- 104 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTT--SCEEEEEEEEECTT------SSCEEEEEEEESSHHHHHHHH-TTTTCEETT--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEEecCCC------CCcccEEEEEECCHHHHHHHH-hcCCCeECC--
Confidence 5689999999999999999998875 34544444332211 122457999999999999988 799998833
Q ss_pred CCeeeeEEEecc
Q 009733 87 GAQFKAIVEYAP 98 (527)
Q Consensus 87 Gne~~A~VEfAP 98 (527)
....|++|-
T Consensus 105 ---~~l~V~~a~ 113 (124)
T 2jwn_A 105 ---RTIKVLPKR 113 (124)
T ss_dssp ---EECEEEESS
T ss_pred ---eEEEEEECC
Confidence 346778774
No 144
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=95.71 E-value=0.033 Score=49.90 Aligned_cols=81 Identities=21% Similarity=0.155 Sum_probs=58.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
...+|.|++||+.+||+++.+.+..+-...|....++..+.. ...-.-|||.|.+.+++...++.++|+.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t------g~skGfaFV~f~~~~~A~~Ai~~lng~~~~G- 126 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN------GQSKGYAEVVVASENSVHKLLELLPGKVLNG- 126 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT------CCEEEEEEEEESCHHHHHHHHHHSTTCEETT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHcCCCEECC-
Confidence 457999999999999999999987652114555555433222 1123469999999999999999999998743
Q ss_pred CCCeeeeEEEec
Q 009733 86 KGAQFKAIVEYA 97 (527)
Q Consensus 86 KGne~~A~VEfA 97 (527)
....|++|
T Consensus 127 ----r~l~V~~a 134 (156)
T 3n9u_C 127 ----EKVDVRPA 134 (156)
T ss_dssp ----EECEEEEC
T ss_pred ----eEeEEEEc
Confidence 24566766
No 145
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.63 E-value=0.018 Score=43.90 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=45.4
Q ss_pred eEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 9 KVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 9 KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+|.|++||+.+||+++.+.+..+ +.|........+.. .....-|||.|.+.+++....+. +++.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~ 66 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF--GEVESIELPMDNKT------NKRRGFCFITFKEEEPVKKIMEK-KYHNVG 66 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH--SCCSEECCCCSCCC------SSSCCCEEEECSSSHHHHHHHTT-SSCCBT
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CCcCCEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 58899999999999999988775 23433333222111 11133599999999999988875 666653
No 146
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.57 E-value=0.031 Score=48.87 Aligned_cols=81 Identities=12% Similarity=0.276 Sum_probs=59.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC--e
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH--V 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~--v 81 (527)
..+..+|.|++||+..||+++.+.+.++ |.|.....+.+ -.-|||.|.+.++....++.+++. .
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~f--G~V~~v~i~~~------------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPF--GKVTNLLMLKG------------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTT--SCCCEEEEEGG------------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCEEEEEEeCC------------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 4567889999999999999999999875 34655555432 145999999999999988888753 3
Q ss_pred eEcCCCCeeeeEEEeccCCCCC
Q 009733 82 FVNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 82 FvDsKGne~~A~VEfAPYQKvP 103 (527)
|. | ....|+||-.+.+-
T Consensus 94 l~---G--r~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 94 LR---G--QPIYIQFSNHKELK 110 (119)
T ss_dssp BT---T--BCCEEEECSSSSCC
T ss_pred EC---C--eEEEEEEccCCCCC
Confidence 32 2 24688998655543
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.54 E-value=0.046 Score=49.96 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=52.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+...|-|++||+.+||+++.+.+..+ |.|.....+.-+.+ .....-|||.|.+.+++..-++.+++..|.
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~d~~t------g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~ 83 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPA--GPILSIRVCRDMIT------RRSLGYAYVNFQQPADAERALDTMNFDVIK 83 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhh--CCEEEEEEecccCC------CCccccccceeCCHHHHHHHHHHhhhhhcC
Confidence 3466789999999999999999999875 34555444422211 112346999999999999999999998864
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.52 E-value=0.03 Score=46.82 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=52.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
...+..+|-|.+||+.+||+++.+.+.++ |.|.....+..+. ...-.-|||.|.+.+++...++ .+++.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~--G~v~~v~i~~d~~-------g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTLH-------KAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTS--SCEEEEEEECCCT-------TSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhc--CCEEEEEEEECCC-------CCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 45567899999999999999999988875 3455444432111 1112359999999999999888 788876
Q ss_pred Ec
Q 009733 83 VN 84 (527)
Q Consensus 83 vD 84 (527)
.+
T Consensus 77 ~g 78 (103)
T 1s79_A 77 KE 78 (103)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 149
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=95.52 E-value=0.023 Score=48.12 Aligned_cols=71 Identities=21% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccC-CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~-gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+..||+++.+.+..+-. +.|.....+..+. -..-.-|||.|.+.+++...++ ++++.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-------g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-------GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-------SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-------CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 456789999999999999999998876421 1133333332111 1113469999999999999888 888765
No 150
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.50 E-value=0.021 Score=48.54 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=48.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+..+|.|++||...||+++.+.+.++ .|.....+..+ ... .-.-|||.|.+.+++.... .++++.|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~---~v~~v~i~~d~------~g~-~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL---RVDAVHLLKDH------VGR-NNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS---CCCEEEECCCT------TCC-CCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC---CeeEEEEEECC------CCC-CCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 45799999999999999999999886 34444443221 111 1246999999999999887 5787665
No 151
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.49 E-value=0.028 Score=53.24 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=58.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
..++|.|.+||+.+||+++.+.+..+-...|.....+.-+.. ...-.-|||.|.+.+++...++.++++.|...
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t------g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN------GQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT------CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC------CccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567899999999999999999997652115655555433222 11234599999999999999999999987532
Q ss_pred CCCeeeeEEEec
Q 009733 86 KGAQFKAIVEYA 97 (527)
Q Consensus 86 KGne~~A~VEfA 97 (527)
...|++|
T Consensus 141 -----~l~V~~a 147 (229)
T 3q2s_C 141 -----NPVVTPV 147 (229)
T ss_dssp -----CCEEEEC
T ss_pred -----EeEEEEC
Confidence 3567776
No 152
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=95.48 E-value=0.047 Score=44.95 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=56.1
Q ss_pred CceEEEecCCCCC------CHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 7 RTKVVIRHLPPSL------SQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 7 r~KVVIRrLPP~L------TEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
..+|.|.+||+.. |++++.+.+..+ |.|...... ... ...-.-|||.|.+.+++..-++.++|+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~--~~~------g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EED------GKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC--CBT------TBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee--CCC------CCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 6799999999999 789999888875 345444333 111 112346999999999999999999998
Q ss_pred eeEcCCCCeeeeEEEec
Q 009733 81 VFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 81 vFvDsKGne~~A~VEfA 97 (527)
.|... ....|++|
T Consensus 85 ~~~g~----~~l~V~~a 97 (105)
T 2nlw_A 85 KLDKQ----HTFRVNLF 97 (105)
T ss_dssp ECSTT----CEEEEECS
T ss_pred ccCCC----ceEEEEEc
Confidence 87432 13566666
No 153
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.46 E-value=0.03 Score=46.44 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=49.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+....+|.|++||+.+||+++.+.+.++- .+ ....+..+ . -..---|||.|.+.+++...++ .+++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~~-~v~i~~d~-~------g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN--PM-RVHIEIGP-D------GRVTGEADVEFATHEDAVAAMA-KDKANM 79 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCC--CS-EEEEEESS-S------SCEEEEEEEECSSSHHHHHHHT-TSSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--ce-EEEEEECC-C------CCEeeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 356778999999999999999999888752 22 22222111 1 1112359999999999998885 587665
Q ss_pred E
Q 009733 83 V 83 (527)
Q Consensus 83 v 83 (527)
-
T Consensus 80 ~ 80 (102)
T 1wez_A 80 Q 80 (102)
T ss_dssp S
T ss_pred C
Confidence 3
No 154
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.44 E-value=0.04 Score=48.96 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=57.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCC-CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~g-kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
+...|.|++||+.+|++++.+.+..+ | .|....+++-. -.-|||.|.+.++.....+.++|..|-+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 185 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQKD-----------RKMALIQMGSVEEAVQALIDLHNHDLGE 185 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESSTT-----------SSCEEEECSSHHHHHHHHHHHTSSCCSS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeCC-----------CcEEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 46789999999999999999999876 4 56555554411 2479999999999999999999998831
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
| ..-.|+||
T Consensus 186 --g--~~l~v~~a 194 (198)
T 1qm9_A 186 --N--HHLRVSFS 194 (198)
T ss_dssp --C--CSCCEEEE
T ss_pred --C--CeEEEEee
Confidence 2 23556665
No 155
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.44 E-value=0.029 Score=47.99 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=46.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHH
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAEL 76 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~ 76 (527)
+..+|.|++||+.+||+++.+.+..+ |.|.....+.-+.. ...-.-|||.|.+.+++....+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKY--GTVTDLKIMKDPAT------GRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTT--CCEEEEECCCCTTT------SSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhC--CCEEEEEEEECCCC------CCccceEEEEEccHHHHHHHHhc
Confidence 46789999999999999999999875 34655554432211 11123599999999999988885
No 156
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.40 E-value=0.057 Score=49.91 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCC-CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~g-kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
+..+|.|++||+.+|++++.+.+..+ + .|....+++- . -..|||.|.+.++.....+.++|..|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~~--~---------~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 216 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQK--D---------RKMALIQMGSVEEAVQALIDLHNHDLGE 216 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEECSS--S---------TTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEEEC--C---------CcEEEEEECCHHHHHHHHHHHCCCccCC
Confidence 46889999999999999999999876 4 5666666541 1 2369999999999999999999998841
Q ss_pred CCCCeeeeEEEec
Q 009733 85 EKGAQFKAIVEYA 97 (527)
Q Consensus 85 sKGne~~A~VEfA 97 (527)
| ..-.|+||
T Consensus 217 --g--~~l~v~~a 225 (229)
T 2adc_A 217 --N--HHLRVSFS 225 (229)
T ss_dssp --S--CBCEEEEC
T ss_pred --C--CeEEEEEe
Confidence 2 24567766
No 157
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=95.31 E-value=0.053 Score=48.34 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+|..-++|.|++||..+||+++.+.+..+ |.|....-+. +. .---|||.|.+.++...-++.++|..|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~y--G~V~~V~i~~---------~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i 91 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFT---------KN-NQFQALLQYADPVSAQHAKLSLDGQNI 91 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTS--SCEEEEEEEE---------ET-TEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCc--CCEEEEEEEc---------CC-CCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 46777899999999999999999999876 2343322211 01 111399999999999999999999999
Q ss_pred EcCCCCeeeeEEEeccCCCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQRVP 103 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQKvP 103 (527)
.+ ....-.|+||--..+.
T Consensus 92 ~g---~~~~LrI~~ak~~~l~ 109 (130)
T 3zzy_A 92 YN---ACCTLRIDFSKLTSLN 109 (130)
T ss_dssp ET---TEEEEEEEECSCSSCC
T ss_pred cC---CCcEEEEEecCCCcee
Confidence 87 2446689999655543
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.25 E-value=0.01 Score=48.06 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+.+..+|.|.+||+.+||+++.+.+..+-. |.. ..+.-.. . .....-|||.|.+.+++....+ ++|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~--v~~-~~~~~~~-----~-g~~~g~afV~f~~~~~a~~A~~-l~g~~~~ 83 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFA--KND-LAVVDVR-----T-GTNRKFGYVDFESAEDLEKALE-LTGLKVF 83 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHH--HHT-CCCCEEE-----E-ETTTTEEEEEESSHHHHHHHHH-GGGCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCC--cce-EEEecCC-----C-CCcCcEEEEEECCHHHHHHHHh-cCCcEEC
Confidence 346789999999999999999888876421 111 0000000 0 0112359999999999999998 9999875
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|++|-
T Consensus 84 g-----~~l~V~~a~ 93 (101)
T 1fj7_A 84 G-----NEIKLEKPK 93 (101)
T ss_dssp T-----BCCEEECCS
T ss_pred C-----cEEEEEEcC
Confidence 3 245677763
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.25 E-value=0.025 Score=45.79 Aligned_cols=67 Identities=9% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+..+|.|.+||+.+||+++.+.+..+ +.|.....+..+ . ...-.-|||.|.+.+++....+ +++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~-~------g~~~g~afV~f~~~~~a~~Ai~--~~~~~ 73 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY--GSVKEVKIITDR-T------GVSKGYGFVSFYNDVDVQKIVE--SQINF 73 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG--SCEEEEEEEECT-T------SCEEEEEEEEESSCCCHHHHTT--CCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEEECC-C------CCccceEEEEECCHHHHHHHHh--CCCeE
Confidence 356789999999999999999999875 345554444332 2 1123569999999999998888 55554
No 160
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.23 E-value=0.063 Score=44.79 Aligned_cols=76 Identities=16% Similarity=0.265 Sum_probs=52.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHh---CCC
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELL---NGH 80 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~f---dG~ 80 (527)
.....+|.|.+||+.+||+++.+.+..+ +.|. ...+.-+.. . .....-.-|||.|.+.+++...++.+ +|+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~i~-~~~~~~~~~-~--~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRF--GPLV-VDWPHKAES-K--SYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTT--CCCC-EECTTSSSS-C--CCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCEE-EEEeecCCC-C--CCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 4567899999999999999999999875 3444 333221111 0 00112346999999999999888887 777
Q ss_pred eeEcC
Q 009733 81 VFVNE 85 (527)
Q Consensus 81 vFvDs 85 (527)
.|+-.
T Consensus 79 ~~~~~ 83 (114)
T 2dnl_A 79 LYLCV 83 (114)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66543
No 161
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.22 E-value=0.052 Score=51.26 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=58.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
..+..+|.|++||+.+||+++.+.+..+ |.|....... . -.-|||.|.+.+++......++|..|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~--------~----kg~afV~f~~~~~A~~A~~~l~g~~i~ 84 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERY--GEPSEVFINR--------D----RGFGFIRLESRTLAEIAKAELDGTILK 84 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGG--CCCSEEEEET--------T----TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc--CCEEEEEEeC--------C----CcEEEEEECCHHHHHHHHHHcCCcEEC
Confidence 4567899999999999999999999875 3344433321 1 246999999999999999999999873
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
+ ....|++|.
T Consensus 85 g-----~~l~v~~a~ 94 (261)
T 3sde_A 85 S-----RPLRIRFAT 94 (261)
T ss_dssp T-----EECEEEECC
T ss_pred C-----ceeEeeecc
Confidence 2 345677764
No 162
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=95.22 E-value=0.043 Score=45.65 Aligned_cols=82 Identities=15% Similarity=0.042 Sum_probs=53.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+||+.+||+++.+.+..+ |.|.....+..+.. ...-.-|||.|.+.+++....+.. ++.|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~t------g~~kg~afV~f~~~~~A~~Ai~~~-~~~l 91 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQF--GEVKECLVMRDPLT------KRSRGFGFVTFMDQAGVDKVLAQS-RHEL 91 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTT--SCEEEEEECCCTTT------CCCTTCEEEEESSHHHHHHHHHSS-CEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHcc--CCeEEEEEEECCCC------CCcCcEEEEEECCHHHHHHHHHHC-CCcC
Confidence 45678899999999999999999999875 34554444332211 111346999999999999988875 3333
Q ss_pred EcCCCCeeeeEEEecc
Q 009733 83 VNEKGAQFKAIVEYAP 98 (527)
Q Consensus 83 vDsKGne~~A~VEfAP 98 (527)
+ | ....|++|-
T Consensus 92 -~--g--~~l~V~~a~ 102 (109)
T 2rs2_A 92 -D--S--KTIDPKVAF 102 (109)
T ss_dssp -T--T--EEEEEEECC
T ss_pred -C--C--EEEEEEEcc
Confidence 2 2 235667663
No 163
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.12 E-value=0.049 Score=51.45 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=58.3
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~-LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
..+...|.|++||+. +|++++.+.+..+ +.|.....+..... ....-.-|||.|.+.++..... .++|+.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~~~~~~-----tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGF--GSIEKINIPAGQKE-----HSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGG--SCEEEEECCSCCC--------CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhcc--CCeeEEEEEecCCc-----CCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 345689999999999 9999999999875 35655555432110 0111235999999999999999 9999887
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
. | ....|.||
T Consensus 279 ~---g--~~i~V~~a 288 (292)
T 2ghp_A 279 G---N--REISVSLA 288 (292)
T ss_dssp T---T--EEEEEEEC
T ss_pred C---C--cEEEEEEe
Confidence 3 2 34567766
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.10 E-value=0.07 Score=46.79 Aligned_cols=81 Identities=14% Similarity=0.139 Sum_probs=55.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcC
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNE 85 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDs 85 (527)
+..+|.|++||+.+||+++.+.+..+ +.|.....+..... ...-.-|||.|.+.+++....+. +|+.|-+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~------g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G- 172 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDRGS------GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG- 172 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHC-SCCEETT-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecCCC------CCccceEEEEECCHHHHHHHHHh-CCcEECC-
Confidence 45789999999999999999999865 45666555533211 11123599999999999887776 6665532
Q ss_pred CCCeeeeEEEeccCC
Q 009733 86 KGAQFKAIVEYAPSQ 100 (527)
Q Consensus 86 KGne~~A~VEfAPYQ 100 (527)
....|.+|.-.
T Consensus 173 ----~~i~v~~a~~k 183 (196)
T 1l3k_A 173 ----HNCEVRKALSK 183 (196)
T ss_dssp ----EECEEEECC--
T ss_pred ----EEEEEEecCCh
Confidence 24667776543
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.10 E-value=0.061 Score=44.15 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=49.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCcee-EEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW-FCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw-~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+..+|.|++||+..||+++.+.+..+ +.|.. ...+.. .. . ..-.-|||.|.+.+++...++. +++.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~~v~i~~~-~~-----g-~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL--EIVPNGMTLPVD-FQ-----G-RSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC--CEEEEEEECCBC-SS-----S-CBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCcceeEEEEEC-CC-----C-CcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 4567899999999999999999988864 33432 222211 11 1 1124699999999999998887 77665
No 166
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=95.09 E-value=0.04 Score=42.96 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=49.9
Q ss_pred ceEEEecCCCCC------CHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 8 TKVVIRHLPPSL------SQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 8 ~KVVIRrLPP~L------TEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
.+|.|.+||+.. ||+++.+.+..+ |.|...... +.. ...-.-|||.|.+.+++....+.++|+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~--~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP--EED------GKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECC--CBT------TBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEec--CCC------CcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 579999999999 779998888764 345444432 111 1123469999999999999999999988
Q ss_pred eEc
Q 009733 82 FVN 84 (527)
Q Consensus 82 FvD 84 (527)
|..
T Consensus 72 ~~g 74 (81)
T 2krb_A 72 LDK 74 (81)
T ss_dssp CSS
T ss_pred cCC
Confidence 743
No 167
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.01 E-value=0.039 Score=46.75 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=58.1
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe-
Q 009733 4 PLQRTKVVIRHLPP-SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV- 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP-~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v- 81 (527)
+.+..+|-|++||+ .+||+++.+.+.++ |.|.....+.++ .-|||.|.+.++....++.+++..
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f--G~V~~v~i~~~k------------g~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF--GVISNHLILNKI------------NEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG--SCEEEEEECSSS------------SCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc--CCEEEEEEEcCC------------CEEEEEECCHHHHHHHHHHHcCCCc
Confidence 45778999999999 99999999988876 456665554321 239999999999999999888652
Q ss_pred eEcCCCCeeeeEEEecc
Q 009733 82 FVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 82 FvDsKGne~~A~VEfAP 98 (527)
-++ | .+..|+||-
T Consensus 78 ~~~--G--r~l~V~~a~ 90 (102)
T 1x4d_A 78 LVF--G--KPVRVHLSQ 90 (102)
T ss_dssp EET--T--EECEEEEEC
T ss_pred eEC--C--cEEEEEECC
Confidence 122 2 246788886
No 168
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=95.00 E-value=0.044 Score=46.80 Aligned_cols=80 Identities=14% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCcee--EEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC-
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--FCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH- 80 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw--~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~- 80 (527)
..+..+|.|++||+.+||+++.+.+..+- .|.. ...+..+.. ...-.-|||.|.+. +....++.++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G--~v~~~~v~i~~d~~t------g~~rG~aFV~f~~~-~a~~Ai~~l~g~~ 90 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYA--VLSSSNVRVIKDKQT------QLNRGFAFIQLSTI-EAAQLLQILQALH 90 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGC--CCCTTTEECCBCSSS------SSBCSCEEEECCHH-HHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhC--CcceeeEEEEEcCCC------CCcceEEEEEECCH-HHHHHHHHhcCCC
Confidence 34678999999999999999999998752 2322 222222211 11134599999999 999999999998
Q ss_pred ---eeEcCCCCeeeeEEEec
Q 009733 81 ---VFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 81 ---vFvDsKGne~~A~VEfA 97 (527)
.|... ...|+||
T Consensus 91 ~~~~~~gr-----~l~V~~a 105 (131)
T 2m2b_A 91 PPLTIDGK-----TINVEFA 105 (131)
T ss_dssp CSCCGGGC-----CCCCEEC
T ss_pred CCccCCCE-----EEEEEEC
Confidence 55332 3456666
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.91 E-value=0.14 Score=48.12 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=60.4
Q ss_pred CCCceEEEecCCCCC-CHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 5 LQRTKVVIRHLPPSL-SQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 5 ~~r~KVVIRrLPP~L-TEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
.+...|.|++||+.+ ||+++.+.+..+ +.|.......... .....-|||.|.+.++.......++|+.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~~~-------g~~~g~afV~f~~~~~A~~A~~~l~g~~~- 251 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACGQD-------GQLKGFAVLEYETAEMAEEAQQQADGLSL- 251 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEECSS-------CCEEEEEEEECSSHHHHHHHHHHHTTCEE-
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEECCC-------CCcccEEEEEeCCHHHHHHHHHHhCCCcc-
Confidence 456789999999997 999999999875 3455555443211 12245799999999999999999999998
Q ss_pred cCCCCeeeeEEEecc
Q 009733 84 NEKGAQFKAIVEYAP 98 (527)
Q Consensus 84 DsKGne~~A~VEfAP 98 (527)
.| ....|.||.
T Consensus 252 --~g--~~l~v~~a~ 262 (284)
T 3smz_A 252 --GG--SHLRVSFCA 262 (284)
T ss_dssp --TT--EECEEEECC
T ss_pred --CC--eEEEEEEec
Confidence 22 266788873
No 170
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=94.91 E-value=0.036 Score=45.76 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccC-CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN-DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~-gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
++....+|.|++||+..||+++.+.+...-. +.|....++..+ . ...-.-|||.|.+.+++...++ ++++.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~------~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR------D-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT------T-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC------C-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 4567889999999999999999998886421 113333333211 1 1112469999999999999888 78766
Q ss_pred e
Q 009733 82 F 82 (527)
Q Consensus 82 F 82 (527)
|
T Consensus 79 ~ 79 (107)
T 2lmi_A 79 M 79 (107)
T ss_dssp S
T ss_pred e
Confidence 5
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.85 E-value=0.078 Score=49.14 Aligned_cols=84 Identities=11% Similarity=0.114 Sum_probs=62.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+|..-++|.|++||+.+||+++.+.+..+ |.|.....+. +. .---|||.|.+.++...-++.++|..|
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~f--G~V~~V~i~~---------k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKF--GTVLKIITFT---------KN-NQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHH--SCEEEEEEEE---------SS-SCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhc--CCEEEEEEEe---------CC-CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 45566788999999999999999998876 3444333221 11 123599999999999999999999998
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
.+. ...-.|+||--..
T Consensus 110 ~g~---g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 110 YNA---CCTLRIDFSKLTS 125 (164)
T ss_dssp SSS---CSCEEEEECSSSS
T ss_pred cCC---CcEEEEEEecCCc
Confidence 752 2346899986443
No 172
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.79 E-value=0.11 Score=48.74 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
....+|.|++||+.+|++++.+.+..+ +.|.....+.-... ...-.-|||.|.+.++.....+.++|..|.+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~i~~~~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPF--GSLERCFLVYSERT------GQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECTTT------CCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhc--CCeeEEEEEeeCCC------CccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 356789999999999999999999875 34555544422111 1123459999999999999999999988732
Q ss_pred CCCCeeeeEEEeccCCCC
Q 009733 85 EKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 85 sKGne~~A~VEfAPYQKv 102 (527)
....|++|.....
T Consensus 165 -----~~i~v~~a~~~~~ 177 (284)
T 3smz_A 165 -----RTLYVHWTDAGQL 177 (284)
T ss_dssp -----EECEEEECCGGGC
T ss_pred -----cEEEEEECCCCCC
Confidence 3567788765443
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=94.75 E-value=0.03 Score=48.48 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=56.0
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccC--CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH 80 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~--gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~ 80 (527)
.+.+..+|.|++||+.+||+++.+.+..+.. + +.......|+ .-.-|||.|.+.+++....+ ++|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~----------~~g~afV~f~~~~~a~~A~~-l~g~ 76 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGT----------NRKFGYVDFESAEDLEKALE-LTGL 76 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEET----------TTTEEEEEESSHHHHHHHHH-GGGE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCc----------cccEEEEEECCHHHHHHHHh-cCCC
Confidence 5778899999999999999998887776531 1 1011111111 12469999999999999884 9988
Q ss_pred eeEcCCCCeeeeEEEeccCC
Q 009733 81 VFVNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 81 vFvDsKGne~~A~VEfAPYQ 100 (527)
.|.+ ....|++|.-.
T Consensus 77 ~~~g-----~~l~v~~~~~~ 91 (175)
T 1fje_B 77 KVFG-----NEIKLEKPKGR 91 (175)
T ss_dssp EETT-----EEEEEECCCCS
T ss_pred EeCC-----eEEEEecCCCc
Confidence 7762 24567776543
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.64 E-value=0.11 Score=48.17 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=59.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCc--eeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRY--NWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkv--dw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+..+|.|++||+.+||+++.+.+.+.- .| .....++.+ . + ...-|||.|.+.++...-+..++|+.+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v~~~~~~-~-----~--~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSVKVFSGK-S-----E--RSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEEEECSCC-S-----S--SSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEEEEEcCC-C-----C--CceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 345799999999999999999998753 23 333333322 1 1 1268999999999999999999999876
Q ss_pred cCCCCeeeeEEEec
Q 009733 84 NEKGAQFKAIVEYA 97 (527)
Q Consensus 84 DsKGne~~A~VEfA 97 (527)
.. +..++-+|.||
T Consensus 192 g~-~~~~p~~vk~~ 204 (205)
T 3tyt_A 192 NP-NGPYPYTLKLC 204 (205)
T ss_dssp CS-SSSSCEECEEE
T ss_pred CC-CCCcceEEEec
Confidence 54 44666666665
No 175
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.62 E-value=0.068 Score=50.47 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+...|.|++||+.+||+++.+.+..+ |.|.....+..... ...-|||.|.+.+++....+ ++|..|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~~--------~~g~afV~f~~~~~A~~A~~-~~~~~~ 105 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHC--GPIIHVDVADSLKK--------NFRFARIEFARYDGALAAIT-KTHKVV 105 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGG--SCEEEEEEEECTTS--------SSEEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCeEEEEEEECCCC--------CcEEEEEEECCHHHHHHHHH-hCCcEe
Confidence 45678899999999999999999999875 34544444432211 13689999999999999885 888877
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
.+ ....|++++..
T Consensus 106 ~g-----~~i~v~~~~~~ 118 (292)
T 2ghp_A 106 GQ-----NEIIVSHLTEC 118 (292)
T ss_dssp TT-----EECEEEECCSC
T ss_pred CC-----cEEEEEECCCC
Confidence 33 24566776533
No 176
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.62 E-value=0.035 Score=45.40 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCceEEEecCCC------CCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC
Q 009733 5 LQRTKVVIRHLPP------SLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN 78 (527)
Q Consensus 5 ~~r~KVVIRrLPP------~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd 78 (527)
.....|.|.+||+ .+||+++.+.+..+ +.|.....+..+.+ ...-.-|||.|.+.+++...++.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~~t------g~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDEAT------GKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEETTT------TEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcCCC------CccceEEEEEECCHHHHHHHHHHhC
Confidence 3467899999999 99999999998875 34544333211111 1122459999999999999999999
Q ss_pred CCeeEc
Q 009733 79 GHVFVN 84 (527)
Q Consensus 79 G~vFvD 84 (527)
|+.|..
T Consensus 76 g~~~~g 81 (100)
T 3ns6_A 76 GKRLDL 81 (100)
T ss_dssp TCBSSS
T ss_pred CcccCC
Confidence 998854
No 177
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=94.54 E-value=0.062 Score=47.52 Aligned_cols=71 Identities=20% Similarity=0.094 Sum_probs=49.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCC-CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFND-RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~g-kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
+.+.++|.|++||+..||+++.+.+..+-.- .|.....+..+ . -..-.-|||.|.+.+++..-++ ++++.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~------~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR------E-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS------S-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC------C-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 4567899999999999999999998875210 03333333111 1 1112369999999999998888 888765
No 178
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.43 E-value=0.23 Score=39.92 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+| .+||+++.+.+..+ +.|...... . + -..|||.|.+.+++...++.++|+.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~--G~i~~v~i~--~-~---------~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD--P-P---------RNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTT--SCEEEEEEE--T-T---------TTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhC--CCEEEEEec--C-C---------CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 4567789999997 99999999999875 345443331 1 1 12599999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccC
Q 009733 83 VNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 83 vDsKGne~~A~VEfAPY 99 (527)
. | ....|+||--
T Consensus 75 ~---g--~~l~v~~a~~ 86 (97)
T 1x5p_A 75 E---S--VQLKVNIARK 86 (97)
T ss_dssp T---T--EEEEEECCSS
T ss_pred C---C--eEEEEEECCC
Confidence 3 2 3567888743
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.41 E-value=0.09 Score=44.89 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=53.1
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
..+|.|++||+.+|++++.+.+..+ +.|.....+..+.. ...-.-|||.|.+.+++....+ .+|..|-+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~~~------g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-- 155 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDKDT------GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-- 155 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSSSS------STTSEEEEEEESSHHHHHHHHH-CSEECSSS--
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcCCC------CccceEEEEEECCHHHHHHHHh-CCCEEeCC--
Confidence 4589999999999999999999875 34555444432211 1113469999999999988777 56655532
Q ss_pred CCeeeeEEEec
Q 009733 87 GAQFKAIVEYA 97 (527)
Q Consensus 87 Gne~~A~VEfA 97 (527)
....|+||
T Consensus 156 ---~~i~V~~a 163 (167)
T 2cjk_A 156 ---RKIEIKRA 163 (167)
T ss_dssp ---SCEEEEEC
T ss_pred ---eEEEEeec
Confidence 23566665
No 180
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.05 E-value=0.093 Score=45.02 Aligned_cols=75 Identities=8% Similarity=0.212 Sum_probs=52.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccc--CC-------CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHH
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAEL 76 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~--~g-------kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~ 76 (527)
+..+|.|++||+.+||+++.+.+.... .+ .+...... . .-.-|||.|.+.+++.... .
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~----------~~g~afV~f~~~~~A~~A~-~ 69 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--Q----------DKNFAFLEFRSVDETTQAM-A 69 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--T----------TTTEEEEEESSHHHHHHHG-G
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec--C----------CCCEEEEEeCCHHHHHHHH-H
Confidence 457899999999999999999887651 11 22221111 0 1346999999999999998 8
Q ss_pred hCCCeeEcCCCCeeeeEEEecc
Q 009733 77 LNGHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 77 fdG~vFvDsKGne~~A~VEfAP 98 (527)
++|..|.+ ....|+++.
T Consensus 70 ~~~~~~~g-----~~i~v~~~~ 86 (172)
T 2g4b_A 70 FDGIIFQG-----QSLKIRRPH 86 (172)
T ss_dssp GTTCEETT-----EECEEECCS
T ss_pred hCCcEecC-----ceeeecCCc
Confidence 99988732 234566554
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.04 E-value=0.21 Score=43.78 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=59.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcce-eEEEEccCcccHHHHHHHhCCCee
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYS-RAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~S-RAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
|..-++|.|.+||..+||+++.+.+..+ |.|.....+. + . . .|+|.|.+.++...-++.++|..|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~y--G~V~~v~i~~---------~-~--Gf~aFVef~~~~~A~~A~~~LnG~~i 87 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPV--GKVQRIVIFK---------R-N--GIQAMVEFESVLCAQKAKAALNGADI 87 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTT--SCEEEEEEEE---------S-S--SEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhc--CCEEEEEEEe---------C-C--CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3444667799999999999999999876 3343322221 1 1 3 599999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccCCC
Q 009733 83 VNEKGAQFKAIVEYAPSQR 101 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQK 101 (527)
.+. .....|+||--..
T Consensus 88 ~g~---~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 88 YAG---CCTLKIEYARPTR 103 (124)
T ss_dssp BTT---BSEEEEECCSCSC
T ss_pred cCC---CeEEEEEEecCCc
Confidence 652 3356788885443
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.99 E-value=0.19 Score=47.44 Aligned_cols=85 Identities=14% Similarity=0.127 Sum_probs=59.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|++||+.+|++++.+.+..+ +.|.....+.... ...-.-|||.|.+.+++....+.+++..|..
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~~~-------g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVDDR-------GRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEETT-------SCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeCCC-------CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 456789999999999999999999875 3465555543211 1123469999999999999999996555554
Q ss_pred CCCCeeeeEEEeccC
Q 009733 85 EKGAQFKAIVEYAPS 99 (527)
Q Consensus 85 sKGne~~A~VEfAPY 99 (527)
... -.+..|++|--
T Consensus 165 ~~~-~r~i~v~~~~~ 178 (261)
T 3sde_A 165 TTT-PRPVIVEPMEQ 178 (261)
T ss_dssp SSS-CCBCEEEECCC
T ss_pred cCC-CceEEEeeccc
Confidence 221 23566777654
No 183
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=93.99 E-value=0.27 Score=39.56 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=48.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
++.+..+|.|.+||+.+||+++.+.+..+ |.|.....+. + .-.-|||.|.+.+++. .+++..|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~--G~i~~v~i~~-~----------srGfaFV~F~~~~~A~----~~~~~~~ 69 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQY--GEVVDVFIPK-P----------FRAFAFVTFADDKVAQ----SLCGEDL 69 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTT--SCEEEEECCS-S----------CCSEEEEEESCHHHHH----HHTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcc--CCEEEEEEee-C----------CCCEEEEEECCHHHHH----HHcCCCc
Confidence 46788999999999999999999999875 3454433321 1 1236999999999876 4666644
Q ss_pred EcCCCCeeeeEEEec
Q 009733 83 VNEKGAQFKAIVEYA 97 (527)
Q Consensus 83 vDsKGne~~A~VEfA 97 (527)
. +.-....|.+|
T Consensus 70 ~---~~g~~v~v~~a 81 (89)
T 3d2w_A 70 I---IKGISVHISNA 81 (89)
T ss_dssp E---ETTEEEEEEEC
T ss_pred c---cCCEEEEEEEc
Confidence 3 11234556655
No 184
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.96 E-value=0.01 Score=49.38 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCcee--------EEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHH
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNW--------FCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAE 75 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw--------~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d 75 (527)
..+..+|.|.+||+.+|++++.+.+..+- .|.. ...+..+. ......-|||.|.+.+++...++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~~~~~~~v~i~~~~~------~g~~~g~afV~f~~~~~A~~Ai~ 75 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIG--IIKTNKKTGQPMINLYTDRE------TGKLKGEATVSFDDPPSAKAAID 75 (116)
Confidence 45678899999999999999988887642 2221 11111000 01113469999999999999999
Q ss_pred HhCCCeeEcCCCCeeeeEEEecc
Q 009733 76 LLNGHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 76 ~fdG~vFvDsKGne~~A~VEfAP 98 (527)
.++|+.|.+. ...|++|-
T Consensus 76 ~l~g~~~~g~-----~l~V~~a~ 93 (116)
T 2lcw_A 76 WFDGKEFSGN-----PIKVSFAT 93 (116)
Confidence 9999887532 35566653
No 185
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.80 E-value=0.17 Score=46.25 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
..+|.|++||+.+||+++.+.+..+ +.|.....+.-. ...-.-|||.|.+.+++..-++.++|+.|-+
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~--------~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-- 170 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE--------NGSKGYGFVHFETQEAAERAIEKMNGMLLND-- 170 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET--------TEEEEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred cccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccC--------CCCceEEEEEeCCHHHHHHHHHHhCCCEECC--
Confidence 4689999999999999999999875 345444333210 1112459999999999999999999998732
Q ss_pred CCeeeeEEEec
Q 009733 87 GAQFKAIVEYA 97 (527)
Q Consensus 87 Gne~~A~VEfA 97 (527)
..-.|++|
T Consensus 171 ---~~i~V~~a 178 (213)
T 4f02_A 171 ---RKVFVGRF 178 (213)
T ss_dssp ---EECEEEEC
T ss_pred ---EEEEEEEc
Confidence 24667776
No 186
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.71 E-value=0.084 Score=45.69 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=55.6
Q ss_pred CCCCceEEEecCCCC-CCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCC--
Q 009733 4 PLQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGH-- 80 (527)
Q Consensus 4 p~~r~KVVIRrLPP~-LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~-- 80 (527)
..+..+|-|++||+. +||+++.+.+.++ +.|.....+.. -.-|||.|.+.++....++.+++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f--G~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY--GKIKNYILMRM------------KSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT--SCCSEEEEETT------------TTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc--CCEEEEEEecC------------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 556889999999998 9999999888775 34655555421 135999999999999998887653
Q ss_pred eeEcCCCCeeeeEEEecc
Q 009733 81 VFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 81 vFvDsKGne~~A~VEfAP 98 (527)
.| +. ....|+||-
T Consensus 88 ~l-~G----r~l~V~~a~ 100 (112)
T 1x4f_A 88 WF-QG----RCVKVDLSE 100 (112)
T ss_dssp CS-SS----SCCEEEEEC
T ss_pred eE-CC----EEEEEEECc
Confidence 23 22 246788873
No 187
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.43 E-value=0.11 Score=45.59 Aligned_cols=74 Identities=8% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhcccc--CC-------CceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHH
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHF--ND-------RYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAEL 76 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~--~g-------kvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~ 76 (527)
...+|.|++||+.+||+++.+.+..+- .+ .+..... |. .-.-|||.|.+.+++.... .
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~--~~----------~~g~afV~F~~~~~A~~Al-~ 69 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI--NQ----------DKNFAFLEFRSVDETTQAM-A 69 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE--ET----------TTTEEEEEESCSHHHHHHG-G
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe--cC----------CCCEEEEEeCCHHHHHHHH-H
Confidence 457899999999999999999887651 01 1211111 11 0246999999999999999 8
Q ss_pred hCCCeeEcCCCCeeeeEEEec
Q 009733 77 LNGHVFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 77 fdG~vFvDsKGne~~A~VEfA 97 (527)
++|..|.+ ....|+++
T Consensus 70 l~g~~~~g-----~~i~v~~~ 85 (198)
T 2yh0_A 70 FDGIIFQG-----QSLKIRRP 85 (198)
T ss_dssp GTTEEETT-----EEEEEECC
T ss_pred hcCCEEcC-----ceEEEeCC
Confidence 99988732 24556655
No 188
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.35 E-value=0.19 Score=44.48 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=51.2
Q ss_pred CCCceEEEecCCCC-CCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccC-cccHHHHHHHhC
Q 009733 5 LQRTKVVIRHLPPS-LSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK-PAGVFEFAELLN 78 (527)
Q Consensus 5 ~~r~KVVIRrLPP~-LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn-~Edl~~F~d~fd 78 (527)
..++-|.|..||+. .|+++|.+.+..+ +.|.|..|+.|... |||.|.+ .++...++..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~--G~V~~Vd~~~g~~t------------gfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNH--GEIKWIDFVRGAKE------------GIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSS--CCEEEEECCTTCSE------------EEEEESSCHHHHHHHHHHTT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhc--CCEEEEEEecCCCE------------EEEEECCChHHHHHHHHHhh
Confidence 56889999999999 9999999999974 47999999877532 9999999 688888888763
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.29 E-value=0.48 Score=43.82 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCceEEEecCC-CCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLP-PSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLP-P~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
+...|-|.+|| ..+||+++.+.+..+ |.|.....+..+ -.-|||.|.+.++...-++.++|..|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~--G~v~~v~i~~~~-----------~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLY--GNVEKVKFMKSK-----------PGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTT--SCEEEEEECTTS-----------TTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhc--CCeEEEEEecCC-----------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 56789999999 699999999999875 345554443211 2359999999999999999999998854
Q ss_pred CCCCeeeeEEEeccCCCC
Q 009733 85 EKGAQFKAIVEYAPSQRV 102 (527)
Q Consensus 85 sKGne~~A~VEfAPYQKv 102 (527)
..-.|+||-.+.+
T Consensus 70 -----~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 70 -----QKMNVCVSKQPAI 82 (205)
T ss_dssp -----EECEEEECSCSCC
T ss_pred -----ceEEEEEccCCcc
Confidence 2467888876554
No 190
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.26 E-value=0.11 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=48.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccC--CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFN--DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~--gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+..+|.|++||...||+++.+.+..+-. +.+.....+..+ . .. .-.-|||.|.+.+++..-++. +++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~-----gr-~~G~aFV~F~~~~~A~~Al~~-~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-D-----GR-PTGDAFVLFACEEYAQNALRK-HKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-T-----SC-EEEEEEECCSSHHHHHHHHTT-TTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-C-----CC-EeeEEEEEECCHHHHHHHHHh-CCCee
Confidence 45689999999999999999998887532 223333443211 1 11 134699999999999988776 76544
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=92.96 E-value=0.13 Score=45.04 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=47.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCce--eEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYN--WFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvd--w~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
+....+|.|++||+..||+++.+.+.++ + |. ....+..+ . -..-.-|||.|.+.+++...++. ++..
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~--~-i~~~~v~i~~d~------~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~ 107 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL--E-IVPNGITLPVDP------E-GKITGEAFVQFASQELAEKALGK-HKER 107 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS--C-EEEEEEECCCCS------S-SSSCSEEEEEESSTTHHHHHHTT-TTCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC--C-ceeeEEEEEECC------C-CCCceEEEEEECCHHHHHHHHHH-CCCE
Confidence 4567899999999999999999999876 2 33 22322111 1 11124699999999999988875 5544
Q ss_pred e
Q 009733 82 F 82 (527)
Q Consensus 82 F 82 (527)
|
T Consensus 108 l 108 (126)
T 2hgm_A 108 I 108 (126)
T ss_dssp B
T ss_pred E
Confidence 3
No 192
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=92.04 E-value=0.078 Score=47.11 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeE
Q 009733 4 PLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFV 83 (527)
Q Consensus 4 p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFv 83 (527)
+....+|.|++||+..||+++.+.+..+- +.....+..+ . -..---|||.|.+.+++...+ ..+++.|-
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G---i~~v~i~~d~------~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~ 111 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN---PVRVHIEIGP------D-GRVTGEADVEFATHEEAVAAM-SKDRANMQ 111 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC---CSEEECCCSS------S-SCSSCCCEEECSHHHHHHHHT-TCCSCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC---CeEEEEEECC------C-CCCceEEEEEeCCHHHHHHHH-hhCCCEEC
Confidence 45678999999999999999999998752 2222222111 1 111235999999999999888 66776553
No 193
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.93 E-value=0.28 Score=38.53 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
.+..+|.|.+||+.+||+++.+.+..+ +.|.....+. + .-.-|||.|.+.+++. .+++..+.-
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~i~~-~----------~~g~afV~f~~~~~a~----~~~~~~~~~ 65 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQY--GDVMDVFIPK-P----------FRAFAFVTFADDQIAQ----SLCGEDLII 65 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTT--SCCCEEECCS-S----------CCSCCEEECSCHHHHH----HTTTCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc--CCeeEEEEec-C----------CCCEEEEEECCHHHHH----HHhcCCcee
Confidence 467899999999999999999988865 3344333321 1 1235999999999875 345553321
Q ss_pred CCCCeeeeEEEecc
Q 009733 85 EKGAQFKAIVEYAP 98 (527)
Q Consensus 85 sKGne~~A~VEfAP 98 (527)
.-....|++|.
T Consensus 66 ---~g~~l~v~~a~ 76 (88)
T 1wf0_A 66 ---KGISVHISNAE 76 (88)
T ss_dssp ---TTEEEEEECCC
T ss_pred ---CCEEEEEEecC
Confidence 12345677664
No 194
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=91.54 E-value=0.33 Score=41.17 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=52.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEc
Q 009733 6 QRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVN 84 (527)
Q Consensus 6 ~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvD 84 (527)
...-|+||+|+|..||+.+++.+..+ |.|..+.++. + -.-|++.|.+.++...-++.+++..+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~--G~V~~~~l~~---~---------kGfaFVey~~~~eA~~Ai~~Ln~~~l~g 70 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH--GPLVSFHPYL---N---------QGIALCKYTTREEANKAQMALNNCVLAN 70 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH--SCEEEEEEET---T---------TTEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh--CCEEEEEEcC---C---------CcEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 34678999999999999999998875 3566655542 1 4579999999999999999999977643
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=91.43 E-value=0.83 Score=38.95 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCee
Q 009733 3 EPLQRTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVF 82 (527)
Q Consensus 3 ~p~~r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vF 82 (527)
.+.+..+|.|.+| .+||+++.+.+..+ +.|...... .+ -.-|||.|.+.+++...++.++|+.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~--G~I~~v~i~---~~---------kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPF--GNIIDLSMD---PP---------RNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTT--CCCSCEEEE---TT---------TTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHcc--CCEEEEEEe---CC---------CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4567789999996 69999999999875 234333332 11 13699999999999999999999988
Q ss_pred EcCCCCeeeeEEEeccCC
Q 009733 83 VNEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 83 vDsKGne~~A~VEfAPYQ 100 (527)
. | ....|+||--+
T Consensus 99 ~---g--~~l~V~~a~~~ 111 (121)
T 2bz2_A 99 E---S--VQLKVNIARKQ 111 (121)
T ss_dssp S---S--CBCEEEECCSS
T ss_pred C---C--eEEEEEEeCCC
Confidence 3 2 34678887544
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=91.22 E-value=0.72 Score=47.11 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCCCceEEEec--CCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 4 PLQRTKVVIRH--LPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 4 p~~r~KVVIRr--LPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
..+..+|.|.+ |+.++||+++.+.+..+ |.|......+| -+.|||.|.+.++....++.++|..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~--G~V~~v~~~~~------------kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC--GLVDALLMPPN------------KPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT--SCEEEEECCTT------------CSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc--CCeEEEEEeCC------------CCEEEEEECCHHHHHHHHHHhCCCc
Confidence 45667899999 57899999999999986 45655444321 2689999999999999999999999
Q ss_pred eEcCCCCeeeeEEEec
Q 009733 82 FVNEKGAQFKAIVEYA 97 (527)
Q Consensus 82 FvDsKGne~~A~VEfA 97 (527)
+.+..|.....-|.|+
T Consensus 81 ~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 81 VVDDLGQKITLYLNFV 96 (345)
T ss_dssp EECTTSCEEECEEEEC
T ss_pred cccccCCceEEEEEEe
Confidence 9888787555566666
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.25 E-value=2.6 Score=34.86 Aligned_cols=78 Identities=15% Similarity=0.177 Sum_probs=51.7
Q ss_pred CCCCCceEEEecC--CCCCC---------HHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHH
Q 009733 3 EPLQRTKVVIRHL--PPSLS---------QNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVF 71 (527)
Q Consensus 3 ~p~~r~KVVIRrL--PP~LT---------EEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~ 71 (527)
.+.+..-|+|++| |+.|. |+++.+.+..+ |.|... ++.-+. .-..|||.|.+.++..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v-~i~~~~---------~~G~afV~f~~~~~A~ 78 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKL-LLFDRH---------PDGVASVSFRDPEEAD 78 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEE-EEETTC---------TTCEEEEECSCHHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEE-EEecCC---------CCEEEEEEECCHHHHH
Confidence 3566677999999 44332 35555555543 345444 332111 2346999999999999
Q ss_pred HHHHHhCCCeeEcCCCCeeeeEEEec
Q 009733 72 EFAELLNGHVFVNEKGAQFKAIVEYA 97 (527)
Q Consensus 72 ~F~d~fdG~vFvDsKGne~~A~VEfA 97 (527)
.-++.++|+.|- | ....|+||
T Consensus 79 ~Ai~~lng~~~~---g--r~l~v~~a 99 (112)
T 2dit_A 79 YCIQTLDGRWFG---G--RQITAQAW 99 (112)
T ss_dssp HHHHHSTTCEET---T--EECEEEEC
T ss_pred HHHHHcCCCEEC---C--cEEEEEEe
Confidence 999999999882 2 34677776
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=88.24 E-value=0.55 Score=45.73 Aligned_cols=82 Identities=10% Similarity=0.174 Sum_probs=61.5
Q ss_pred CCCceEEEecCCCCC---------CHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHH
Q 009733 5 LQRTKVVIRHLPPSL---------SQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAE 75 (527)
Q Consensus 5 ~~r~KVVIRrLPP~L---------TEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d 75 (527)
....+|-|.+||+.+ ||+++.+.+..+ |.|.....++. -.-|||.|.+.++...-++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~~------------kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVES------------KNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEGG------------GTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEECC------------CCEEEEEeCCHHHHHHHHH
Confidence 356789999999998 799999988875 45766666531 2359999999999999999
Q ss_pred HhCCCeeE-------cCCCCeeeeEEEeccCC
Q 009733 76 LLNGHVFV-------NEKGAQFKAIVEYAPSQ 100 (527)
Q Consensus 76 ~fdG~vFv-------DsKGne~~A~VEfAPYQ 100 (527)
.++|..|. |..+.-....|.||--.
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 99999883 22233456788888433
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=86.25 E-value=2 Score=39.48 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=45.6
Q ss_pred CceEEEecCCCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC
Q 009733 7 RTKVVIRHLPPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN 78 (527)
Q Consensus 7 r~KVVIRrLPP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd 78 (527)
..+|.|++||+..|++++.+.+..+ |.|......... ....-.-|||.|.+.+++....+..+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~--G~v~~v~i~~~~-------~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDK--GQVLNIQMRRTL-------HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTS--CCEEEEEEEECT-------TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcC--CCEEEEEEEECC-------CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 3689999999999999999988875 345544443211 11123469999999999998887653
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=85.74 E-value=2.1 Score=35.82 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCceEEEecC--CCCCCHHHHHH----Hhcccc--CCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHh
Q 009733 6 QRTKVVIRHL--PPSLSQNDLLA----LFRDHF--NDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELL 77 (527)
Q Consensus 6 ~r~KVVIRrL--PP~LTEEeF~e----~L~p~~--~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~f 77 (527)
|-.=|||+++ |-.|.+++.++ .|...+ -|.|.-..-...... ........|||.|.+.++...-++.+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~----~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDG----VEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTT----BCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCC----CCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 3445788988 66776543332 222222 145544332211111 11233568999999999999999999
Q ss_pred CCCeeEcCCCCeeeeEEEeccC
Q 009733 78 NGHVFVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 78 dG~vFvDsKGne~~A~VEfAPY 99 (527)
+|..|- | ..-.|+|++-
T Consensus 80 nG~~f~---G--R~i~v~~~~~ 96 (105)
T 3v4m_A 80 TGRKFA---N--RVVVTKYCDP 96 (105)
T ss_dssp TTCEET---T--EECEEEEECH
T ss_pred CCCEeC---C--CEEEEEEeCH
Confidence 999983 2 2456777653
No 201
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.12 E-value=2.6 Score=36.25 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=54.5
Q ss_pred EEEecCCCCCCHHHHHHHhccccC---CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCC
Q 009733 10 VVIRHLPPSLSQNDLLALFRDHFN---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEK 86 (527)
Q Consensus 10 VVIRrLPP~LTEEeF~e~L~p~~~---gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsK 86 (527)
|-|++||-.++++++...|..++. |+|-.. . -..|||.|.+.++...-.+.++|..|.+.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr- 74 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T---------GCSAILRFINQDSAERAQKRMENEDVFGN- 74 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C---------TTCEEEEESSHHHHHHHHHHHTTCCSSSS-
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e---------cCEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 559999999999998876666552 244221 1 17899999999999999999999987654
Q ss_pred CCeeeeEEEeccCCC
Q 009733 87 GAQFKAIVEYAPSQR 101 (527)
Q Consensus 87 Gne~~A~VEfAPYQK 101 (527)
+-.|.||+...
T Consensus 75 ----~i~v~~A~~~s 85 (96)
T 2diu_A 75 ----RIIVSFTPKNR 85 (96)
T ss_dssp ----CCEEESSCCSC
T ss_pred ----eEEEEecCCCc
Confidence 35788887665
No 202
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=83.81 E-value=9.9 Score=31.70 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=54.6
Q ss_pred CCCCceEEEecCCC--CC---CHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhC
Q 009733 4 PLQRTKVVIRHLPP--SL---SQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLN 78 (527)
Q Consensus 4 p~~r~KVVIRrLPP--~L---TEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fd 78 (527)
+.+..-|+|++|.. .| +++++.+.+..+ |.|....-..-... ....-..|||.|.+.++...-++.++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~~~~-----~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEIPGA-----PDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEECSSC-----CTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecCCCC-----CCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 34556799999962 23 567777766654 34544333211100 11224689999999999999999999
Q ss_pred CCeeEcCCCCeeeeEEEeccC
Q 009733 79 GHVFVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 79 G~vFvDsKGne~~A~VEfAPY 99 (527)
|..|- | ..-.|+||+-
T Consensus 78 G~~~~---G--r~i~v~~a~~ 93 (105)
T 2pe8_A 78 GRYFG---G--RVVKACFYNL 93 (105)
T ss_dssp TCEET---T--EECEEEECCH
T ss_pred CCEEC---C--cEEEEEEcCH
Confidence 99983 2 3457777753
No 203
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=71.67 E-value=12 Score=34.16 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=41.1
Q ss_pred ceEEEecC----CCCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccC----ccc----HHHHHH
Q 009733 8 TKVVIRHL----PPSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK----PAG----VFEFAE 75 (527)
Q Consensus 8 ~KVVIRrL----PP~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn----~Ed----l~~F~d 75 (527)
++|||..| |+..||+++.+.+..+ |.|..+..+-...+ --.---|.|.|.+ +++ ....+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f--GeV~~~~li~Dp~T------g~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY--GEISHFEAFNDPNS------ALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT--SCCSEEEEEECTTT------CCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc--CCeEEEEEEecCCC------CceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 79999999 9999999999999864 35666666533222 1124568899986 444 455555
No 204
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.77 E-value=11 Score=33.01 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHhccc---cCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 5 LQRTKVVIRHLPPSLSQNDLLALFRDH---FNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 5 ~~r~KVVIRrLPP~LTEEeF~e~L~p~---~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
.-+.+|.|+.|||.+.++-+.--+... ..+.|....|.+ .-|+|.|.+.+.+......- .|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------------~~AvItF~d~~va~rVL~k~-~H~ 70 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------------CGGVLTFREPADAERVLAQA-DHE 70 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------------TEEEEEESSHHHHHHHHTCS-CCB
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------------CcEEEEEcChHHHHHHhcCC-cce
Confidence 457899999999999987554445442 245665555532 56899999988886665541 244
Q ss_pred eEc
Q 009733 82 FVN 84 (527)
Q Consensus 82 FvD 84 (527)
|.+
T Consensus 71 L~~ 73 (104)
T 2dhx_A 71 LHG 73 (104)
T ss_dssp SSS
T ss_pred ecC
Confidence 444
No 205
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=67.16 E-value=16 Score=31.31 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=30.5
Q ss_pred ceeEEEEccCcccHHHHHHHhCCCeeEcCCCCeeeeEEEeccC
Q 009733 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAPS 99 (527)
Q Consensus 57 ~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~VEfAPY 99 (527)
-..+||.|.+.++...-++.++|..|- | ..-.|+|++-
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~---G--R~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFA---G--RKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEET---T--EECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEEC---C--cEEEEEEcCh
Confidence 357999999999999999999999983 2 2456777653
No 206
>2xb2_G Regulator of nonsense transcripts 3B; EXON junction complex, nonsense-mediated mRNA decay, translation, UPF3B, hydrolase; HET: ANP; 3.40A {Homo sapiens}
Probab=47.96 E-value=7.5 Score=31.15 Aligned_cols=24 Identities=42% Similarity=0.678 Sum_probs=19.0
Q ss_pred HHhhhccCCCCCCccccc-ccCCcc
Q 009733 405 QEKRTRNKDRPDRVVWTP-RRSDVS 428 (527)
Q Consensus 405 ~e~~~rnkdrpdrgvw~p-rr~~~s 428 (527)
.++|.||||||---++-| -|+...
T Consensus 4 ~~~rirnKDRP~~qiYqPgar~r~~ 28 (60)
T 2xb2_G 4 KRDRIRNKDRPAMQLYQPGARSRNR 28 (60)
T ss_pred HhhhhhhcCCceeeeeCCcceeccc
Confidence 468899999999999999 444443
No 207
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=46.89 E-value=16 Score=30.21 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.6
Q ss_pred ceeEEEEccCcccHHHHHHHhCCCeeEcCCCCeeeeEEEecc
Q 009733 57 YSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 57 ~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~VEfAP 98 (527)
...|||.|.+.++...-.+.++|+.|-. ..-.|+|+|
T Consensus 68 ~G~~fV~f~~~~~A~~A~~~lng~~~~G-----r~i~v~~sp 104 (104)
T 1jmt_A 68 VGNVYVKFRREEDAEKAVIDLNNRWFNG-----QPIHAELSP 104 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETT-----EECCEEECC
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECC-----EEEEEEEcC
Confidence 5679999999999999999999998743 235678876
No 208
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=44.17 E-value=85 Score=26.60 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=49.7
Q ss_pred CCCCceEEEecCCC--CCC----HHHHHHHhccccC--CCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHH
Q 009733 4 PLQRTKVVIRHLPP--SLS----QNDLLALFRDHFN--DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAE 75 (527)
Q Consensus 4 p~~r~KVVIRrLPP--~LT----EEeF~e~L~p~~~--gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d 75 (527)
|.+-.=|||+++=- .|. .+++.+.|...+. |.|... +++- ......|||.|.+.++...-++
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v-~i~~---------~~~~G~~fV~f~~~e~A~~Ai~ 73 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHI-YVDK---------NSAQGNVYVKCPSIAAAIAAVN 73 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEE-EECT---------TCTTCCEEEECSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEE-EEec---------CCCcEEEEEEECCHHHHHHHHH
Confidence 44555578888733 333 2444444444442 445432 2221 1124679999999999999999
Q ss_pred HhCCCeeEcCCCCeeeeEEEecc
Q 009733 76 LLNGHVFVNEKGAQFKAIVEYAP 98 (527)
Q Consensus 76 ~fdG~vFvDsKGne~~A~VEfAP 98 (527)
.++|..|- | ..-.|+|++
T Consensus 74 ~lnG~~f~---G--R~i~v~~~~ 91 (114)
T 3s6e_A 74 ALHGRWFA---G--KMITAAYVP 91 (114)
T ss_dssp HHTTCEET---T--EECEEEEEC
T ss_pred HhCCCEEC---C--EEEEEEEEc
Confidence 99999983 2 245678875
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.67 E-value=41 Score=29.29 Aligned_cols=70 Identities=14% Similarity=0.286 Sum_probs=48.0
Q ss_pred CceEEEecCCCCC-CHH----HHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCe
Q 009733 7 RTKVVIRHLPPSL-SQN----DLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHV 81 (527)
Q Consensus 7 r~KVVIRrLPP~L-TEE----eF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~v 81 (527)
..-|+|=+||+.+ ..+ +|.+.+... +.-+.|.+|. | +-|+-|+|.++++...-+..+++..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~-~~~~tF~~lk----S---------FRRirv~F~~~~~A~~AR~~Lh~~~ 70 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY-DKDTTFQYFK----S---------FKRVRINFSNPLSAADARLRLHKTE 70 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT-CSSCEEEEET----T---------TTEEEEECSSTTHHHHHHHTSTTSE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh-CcCcceeecC----c---------ceEEEEEeCChHHHHHHHHHhccce
Confidence 3568888998865 433 344444332 3345565552 2 4499999999999999999999999
Q ss_pred eEcCCCCee
Q 009733 82 FVNEKGAQF 90 (527)
Q Consensus 82 FvDsKGne~ 90 (527)
|...+=..|
T Consensus 71 f~g~~~r~Y 79 (104)
T 1wey_A 71 FLGKEMKLY 79 (104)
T ss_dssp ETTEECEEE
T ss_pred ecCceeEEE
Confidence 987643333
No 210
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.20 E-value=2e+02 Score=23.72 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHhccccCCCceeEEeeCCCCCCccCCCCCcceeEEEEccCcccHHHHHHHhCCCeeEcCCCCeeeeEEEe
Q 009733 17 PSLSQNDLLALFRDHFNDRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKKPAGVFEFAELLNGHVFVNEKGAQFKAIVEY 96 (527)
Q Consensus 17 P~LTEEeF~e~L~p~~~gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn~Edl~~F~d~fdG~vFvDsKGne~~A~VEf 96 (527)
+.+||+++.+.+..+ +.|.....+ ++ + -.-|||.|.+.++....++..++. .| .+..|+|
T Consensus 27 ~~~te~~L~~~F~~~--G~V~~v~i~-~~-~---------rGfaFVeF~~~~~A~~Ai~~~~~~-----~g--~~l~V~~ 86 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY--GEVLNLVLS-SK-K---------PGTAVVEFATVKAAELAVQNEVGL-----VD--NPLKISW 86 (100)
T ss_dssp CSCCHHHHHHHHHTT--SCEEEEEEE-SS-S---------SSEEEEEESCHHHHHHHHHTCCBC-----SS--SBCEEEC
T ss_pred CCCCHHHHHHHHHhc--CCEEEEEEc-cC-C---------CCEEEEEECCHHHHHHHHHhcCCC-----CC--CeEEEEE
Confidence 679999999999875 345554433 31 1 236999999999988887774432 12 2456777
Q ss_pred cc
Q 009733 97 AP 98 (527)
Q Consensus 97 AP 98 (527)
|-
T Consensus 87 a~ 88 (100)
T 2d9o_A 87 LE 88 (100)
T ss_dssp SS
T ss_pred cc
Confidence 63
No 211
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=23.38 E-value=1.4e+02 Score=24.12 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=30.3
Q ss_pred EEecCCCCCCHHHHHHHhcccc-C---CCceeEEeeCCCCCCccCCCCCcceeEEEEccC
Q 009733 11 VIRHLPPSLSQNDLLALFRDHF-N---DRYNWFCFRPGKSSFFYSYKHQRYSRAYVELKK 66 (527)
Q Consensus 11 VIRrLPP~LTEEeF~e~L~p~~-~---gkvdw~yFVpGK~S~k~p~K~~~~SRAYI~Fkn 66 (527)
.|..|.|+||.++....|+... . +.-.|. |+--... ........+..|.|.+
T Consensus 9 ~~~~i~~GmTk~qV~~lLG~P~~~~~f~~~~W~-Yv~~~~~---g~~~~~~~~l~V~Fd~ 64 (88)
T 2yh9_A 9 DVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWF-YVFRQQP---GHEGVTQQTLTLTFNS 64 (88)
T ss_dssp -CTTCCTTCBHHHHHHHHCSCSEECCTTCSEEE-EECCSCT---TCCSSSCCEEEEEECT
T ss_pred HHHhccCCCCHHHHHHHcCCCcccccccCCeEE-EEEEeec---CCCCcEEEEEEEEEcC
Confidence 3678999999999999998532 1 122343 3311111 1233445667777765
Done!