Your job contains 1 sequence.
>009734
MGDVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTA
VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVS
TVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSEND
AASNHSSGYMACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDMPDLSRQLWGKSLQND
VKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAHFDEDTELETHRSDVILTSEVC
NVPVNSPRQVIDFMSAFNNHKPPSNNGASRFDSSPQLDLSLRRTHPDGFENQVERKFILR
HSNASAFTRYTNKPSEPQHSSLSGVCNQQKEFETDSEKNFSNILTACNSYTPAATLSTQR
SVNSLATGHSKQSELAVSYPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPAT
DQSASSSFCNGAVSRLNSMGYGSACGSNSNLDQVTAGRAKQLLISSG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009734
(527 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 547 6.1e-62 2
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 448 3.9e-47 3
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 294 4.3e-23 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 252 2.1e-18 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 252 2.8e-18 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 225 7.1e-18 1
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 248 2.8e-17 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 236 1.0e-16 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 205 1.0e-15 1
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 222 1.2e-15 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 223 1.1e-14 2
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 194 1.6e-14 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 204 8.5e-14 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 204 8.5e-14 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 212 9.1e-14 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 187 9.2e-14 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 186 1.2e-13 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 184 1.9e-13 1
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 181 4.1e-13 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 181 4.1e-13 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 150 1.7e-12 2
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 188 2.7e-12 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 182 3.8e-12 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 168 1.0e-11 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 167 1.3e-11 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 164 2.8e-11 1
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 145 6.4e-11 2
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 139 5.6e-10 2
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 151 7.1e-10 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 150 9.1e-10 1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 148 1.5e-09 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 170 3.3e-09 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 163 5.3e-09 1
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 166 9.3e-09 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 140 1.1e-08 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 140 1.1e-08 1
UNIPROTKB|Q9KM66 - symbol:cqsS "CAI-1 autoinducer sensor ... 164 1.3e-08 1
TIGR_CMR|VC_A0522 - symbol:VC_A0522 "sensor histidine kin... 164 1.3e-08 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 139 1.4e-08 1
UNIPROTKB|Q8EEQ6 - symbol:cheY "Chemotaxis signal transdu... 139 1.4e-08 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 139 1.4e-08 1
TIGR_CMR|SO_2318 - symbol:SO_2318 "chemotaxis protein Che... 139 1.4e-08 1
TIGR_CMR|CPS_0681 - symbol:CPS_0681 "DNA-binding response... 152 2.2e-08 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 136 2.9e-08 1
UNIPROTKB|Q4KG71 - symbol:fleR "Sigma-54 dependent DNA-bi... 157 4.1e-08 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 134 4.8e-08 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 134 4.8e-08 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 157 5.2e-08 1
UNIPROTKB|Q48P87 - symbol:pilG "Type IV pilus response re... 133 6.2e-08 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 133 6.2e-08 1
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 133 6.2e-08 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 133 6.2e-08 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 133 6.2e-08 1
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 133 6.2e-08 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 131 1.0e-07 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 131 1.0e-07 1
UNIPROTKB|Q48GE0 - symbol:fleR "Sigma-54 dependent DNA-bi... 153 1.1e-07 1
TIGR_CMR|GSU_2041 - symbol:GSU_2041 "sigma-54 dependent D... 152 1.4e-07 1
TIGR_CMR|BA_4777 - symbol:BA_4777 "DNA-binding response r... 143 1.9e-07 1
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 143 1.9e-07 1
UNIPROTKB|Q884Y0 - symbol:fleR "Sigma-54 dependent transc... 151 1.9e-07 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 128 2.1e-07 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 128 2.1e-07 1
UNIPROTKB|Q48ND2 - symbol:cheY1 "Chemotaxis protein CheY"... 128 2.1e-07 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 128 2.1e-07 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 127 2.7e-07 1
TIGR_CMR|GSU_1302 - symbol:GSU_1302 "sensor histidine kin... 152 3.5e-07 1
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 149 3.6e-07 1
TIGR_CMR|BA_2212 - symbol:BA_2212 "DNA-binding response r... 140 4.0e-07 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 139 5.6e-07 1
UNIPROTKB|Q52879 - symbol:cheY1 "CheY1" species:382 "Sino... 124 5.7e-07 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 124 5.7e-07 1
TIGR_CMR|CBU_1227 - symbol:CBU_1227 "DNA-binding response... 139 6.0e-07 1
UNIPROTKB|P76340 - symbol:yedW "predicted DNA-binding res... 138 6.2e-07 1
TIGR_CMR|CBU_0367 - symbol:CBU_0367 "DNA-binding response... 140 6.3e-07 1
UNIPROTKB|Q9KS62 - symbol:VC_1398 "Chemotaxis protein Che... 123 7.4e-07 1
TIGR_CMR|DET_0130 - symbol:DET_0130 "response regulator" ... 123 7.4e-07 1
TIGR_CMR|VC_1398 - symbol:VC_1398 "chemotaxis protein Che... 123 7.4e-07 1
TIGR_CMR|CPS_2786 - symbol:CPS_2786 "response regulator" ... 139 7.5e-07 1
TIGR_CMR|CHY_2047 - symbol:CHY_2047 "DNA-binding response... 138 7.7e-07 1
UNIPROTKB|Q8ECB3 - symbol:flrC "Two component signal tran... 145 7.8e-07 1
TIGR_CMR|SO_3230 - symbol:SO_3230 "flagellar regulatory p... 145 7.8e-07 1
TIGR_CMR|BA_5504 - symbol:BA_5504 "DNA-binding response r... 137 8.5e-07 1
TIGR_CMR|SO_1228 - symbol:SO_1228 "torcad operon transcri... 138 8.6e-07 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 142 8.7e-07 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 139 8.8e-07 1
TIGR_CMR|BA_3261 - symbol:BA_3261 "DNA-binding response r... 137 8.9e-07 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 122 9.4e-07 1
UNIPROTKB|Q9KRK2 - symbol:VC_1638 "DNA-binding response r... 136 1.0e-06 1
TIGR_CMR|VC_1638 - symbol:VC_1638 "DNA-binding response r... 136 1.0e-06 1
TIGR_CMR|CPS_1388 - symbol:CPS_1388 "transcriptional regu... 136 1.1e-06 1
TIGR_CMR|SO_4477 - symbol:SO_4477 "transcriptional regula... 136 1.3e-06 1
UNIPROTKB|Q746Z1 - symbol:GSU3376 "Response receiver-modu... 140 1.3e-06 1
TIGR_CMR|GSU_3376 - symbol:GSU_3376 "GGDEF/response regul... 140 1.3e-06 1
TIGR_CMR|GSU_1129 - symbol:GSU_1129 "sigma-54 dependent D... 143 1.3e-06 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 136 1.5e-06 1
TIGR_CMR|GSU_1102 - symbol:GSU_1102 "DNA-binding response... 135 1.6e-06 1
TIGR_CMR|DET_1058 - symbol:DET_1058 "DNA-binding response... 135 1.7e-06 1
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D... 142 1.7e-06 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 143 2.0e-06 1
WARNING: Descriptions of 163 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 547 (197.6 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 113/193 (58%), Positives = 137/193 (70%)
Query: 1 MGDVVL--ND---EELKEMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSS 55
MG++V+ +D E +K + + +WE +L + LRVLLVE+D STRQI+TALLRK
Sbjct: 1 MGEIVVLSSDDGMETIKNRVKSSEVVQWEKYLPKTVLRVLLVESDYSTRQIITALLRKCC 60
Query: 56 YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115
Y+V AV DGL AWEVLK + NIDLILTE+DLPSISGFALL LVMEHE CKNIPVIMMSS
Sbjct: 61 YKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSISGFALLALVMEHEACKNIPVIMMSS 120
Query: 116 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGN-ETQDESVGQQKIE 174
QDS+ V KCM+RGAADYL+KP+R+NEL+NLWQHVWRR + Q Q +E
Sbjct: 121 QDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHVWRRLTLRDDPTAHAQSLPASQHNLE 180
Query: 175 ATSENDAASNHSS 187
T E S + S
Sbjct: 181 DTDETCEDSRYHS 193
Score = 104 (41.7 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 335 PQLDLSLRRTHPDGFENQVERKFI-LRHSNASAFTRYT-NKPSEPQHSSLSGVCNQQKEF 392
P+L LSL+R+ FENQ E K L S+ASAF+R+ +K +E +L + + +
Sbjct: 256 PELGLSLKRSCSVSFENQDESKHQKLSLSDASAFSRFEESKSAEKAVVALEESTSGEPKT 315
Query: 393 ETDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSYPQQRPCPVPV 449
T+S + + + S A T S Q ++ S + Q + Q++ P+PV
Sbjct: 316 PTESHEKLRKVTSDQGS---ATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPV 369
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 448 (162.8 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 124/341 (36%), Positives = 184/341 (53%)
Query: 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLIL 82
WE FL +RVLLVE DD TR IVTALLR SY V +G++AW+VL+ +ID++L
Sbjct: 69 WERFLHVRTIRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVL 128
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
TEV +P +SG LL ++ H+ +NIPVIMMSS DS+ V+KC+ +GA D+LVKP+R+NE
Sbjct: 129 TEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNE 188
Query: 143 LRNLWQHVWRR-QSSMVSGNET----QDESVGQQKIEATSENDAASNHS-SGYMACIQSK 196
L+ LWQHVWRR QSS SG+E+ +SV + I+ + ++ +S+ + +G + S
Sbjct: 189 LKILWQHVWRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASD 248
Query: 197 GEFIEKGSDEQSSCTKPDFEAESAHVEDMPDLSRQLWGKSLQNDVKMQNHEARVNYGQKS 256
G GS QSS TK ++ V+D P + LW + + + A+V +
Sbjct: 249 GS--SDGSGAQSSWTK-----KAVDVDDSPR-AVSLWDR-------VDSTCAQVVHSNPE 293
Query: 257 LVPVTEAQGSEVAACKEANTRAHFDEDTELETHRSDVILTSEVCNV---PVNSP-RQVID 312
P + VA E T+ H D+ ++ R I C++ P + P +
Sbjct: 294 F-PSNQL----VAPPAEKETQEHDDKFEDVTMGRDLEISIRRNCDLALEPKDEPLSKTTG 348
Query: 313 FMSAFNNHKPPSNNGASRFDSSPQLDLSL-----RRTHPDG 348
M N+ + S+ + P LDLS ++ H DG
Sbjct: 349 IMRQDNSFEKSSSKWKMKVGKGP-LDLSSESPSSKQMHEDG 388
Score = 49 (22.3 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 342 RRTHPDGFENQVERKFILRHSNASAFTRY 370
R T DG + +R +LR S SAF+RY
Sbjct: 439 RGTKDDGTLVRDDRN-VLRRSEGSAFSRY 466
Score = 40 (19.1 bits), Expect = 3.9e-47, Sum P(3) = 3.9e-47
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 490 NGAVSRLNSMGYGSACGSNS-NL 511
NGA N G GS GS S NL
Sbjct: 638 NGAGKNGNGDGSGSGSGSGSGNL 660
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 294 (108.6 bits), Expect = 4.3e-23, P = 4.3e-23
Identities = 59/129 (45%), Positives = 80/129 (62%)
Query: 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85
F+ R +R+LL + D ++ V LL + SY+VTAV + + L +ID+IL E+
Sbjct: 13 FIDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPDIDIILAEI 72
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
DLP G +L + + + IPVIMMS QD V V KC+ GAADYLVKP+R NEL N
Sbjct: 73 DLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKPLRTNELLN 132
Query: 146 LWQHVWRRQ 154
LW H+WRR+
Sbjct: 133 LWTHMWRRR 141
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 252 (93.8 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 120/469 (25%), Positives = 190/469 (40%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+ +RVL V+ D + +I+ +LLR Y VT KA E+L+ DL++++VD+P
Sbjct: 15 VGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPD 74
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ GF LL LV + ++PVIM+S+ V K + GA DYL+KPVR EL+N+WQH
Sbjct: 75 MDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQH 131
Query: 150 VWRRQSSMVSG-NETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQS 208
V R + G N D+ G E +D +N Q + E D
Sbjct: 132 VVRSRFDKNRGSNNNGDKRDGSGN-EGVGNSDQ-NNGKGNRKRKDQYNEDEDEDRDDNDD 189
Query: 209 SCTKPDFEAE---SAHVEDMPDLSRQLWGKSLQNDV-KMQNHE--ARVNYG---QKSLVP 259
SC + H + + +++ + K++ + + N E R N QK +
Sbjct: 190 SCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLY 249
Query: 260 VTEAQGSEVAACKEANTRAHFDEDTELET--HRSDVILTSEVCN-VPVNSPRQVIDFMSA 316
+ G AN+ HF + L+ HR + + + P +
Sbjct: 250 LKRISGVANQQAIMANSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMRSFPPNGILGR 309
Query: 317 FNNHKPPSNNGASRFDSSPQLDLSLRRTHPDGFENQVERKFILRHSNASAFTRYTNKPSE 376
N PS G R SSP + L+ G + V L HS+ + P E
Sbjct: 310 LNT---PSGIGV-RSLSSPPAGMFLQNQTDIGKFHHVS-SLPLNHSDGGNILQGLPMPLE 364
Query: 377 PQHSSLSGVCNQQKEFETDSEKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELA 436
L N K +S K+ + A S+ STQ+ NSL + + +
Sbjct: 365 --FDQLQ--TNNNKSRNMNSNKSIAGTSMAFPSF------STQQ--NSLISAPNNNVVVL 412
Query: 437 VSYPQQRPCPVPVSVKVNSTNQAMHKLDHKLDSLEDLGHISPATDQSAS 485
+PQ P P ++N +L+H +++ H P S S
Sbjct: 413 EGHPQATPPGFP-GHQINK------RLEHWSNAVSSSTHPPPPAHNSNS 454
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 252 (93.8 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 85/278 (30%), Positives = 129/278 (46%)
Query: 17 NEGIAKWETFLQRM--ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR 74
N+G ET ++ LRVL+V+ D + I+ +LR Y VT A +L+
Sbjct: 21 NQG-GGGETVVEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKN 79
Query: 75 PRNIDLILTEVDLPSISGFALLTLVMEHE-ICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133
D+++++V +P + GF LL EH + ++PVIMMS+ DS S V K + GA DY
Sbjct: 80 KHGFDIVISDVHMPDMDGFKLL----EHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDY 135
Query: 134 LVKPVRRNELRNLWQHVWRRQSSMVSGNETQD--ESVGQQKIEATSENDAASNHSSGYMA 191
L+KPVR L+N+WQHV R++ S S E E G+++ + + S G A
Sbjct: 136 LIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDA 195
Query: 192 CIQSKGEFIEKGSDEQSSCTK-PDFEAESA---HVEDMPDLS--RQLWGKSLQNDVKMQN 245
+ + +G++ +SS K D E E ED +L R +W L Q
Sbjct: 196 -VDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELH-----QQ 249
Query: 246 HEARVNY-GQKSLVPVTEAQGSEVAACKEANTRAHFDE 282
A VN G + VP + V N +H +
Sbjct: 250 FVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQK 287
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 225 (84.3 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 48/117 (41%), Positives = 74/117 (63%)
Query: 36 LVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
++ DDS R +++ LLR S YRVT V G +A EVL RN+ +I+T+ +P ++GF
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLS-LDRNVHMIITDYCMPEMTGF 71
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
LL V E K IPV++MSS++S + + +C+ GA D+L+KPVR +++ L V
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRV 128
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 248 (92.4 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 67/194 (34%), Positives = 107/194 (55%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL+V+ D + I+ +L YRVT A +L+ D+++++V +P +
Sbjct: 28 LRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMD 87
Query: 92 GFALLTLVMEHE-ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
GF LL EH + ++PVIMMS+ DS S V K + GA DYL+KPVR L+N+WQHV
Sbjct: 88 GFKLL----EHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHV 143
Query: 151 WRRQS-----SMVSGNETQD---ESVGQQKIEATSENDAAS-NHSSGYMACIQSKGEFIE 201
R++ S SG +D + QQ+ ++N+++S N +G + + + E +
Sbjct: 144 VRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDD 203
Query: 202 KGSDEQ--SSCTKP 213
+G D++ SS KP
Sbjct: 204 QGDDKEDSSSLKKP 217
Score = 39 (18.8 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 234 GKSLQNDVKMQNHEARVNYGQKSLVPVTEAQGSEVAACKEANTRAH 279
G++LQ+ + H V + V V + +E C ANT H
Sbjct: 583 GQNLQSPSRNLYHLNHV-FMDGGSVRVKSERVAETVTCPPANTLFH 627
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 236 (88.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 54/157 (34%), Positives = 91/157 (57%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+ +RVL V+ D + +I+ LL++ Y VT A E+L+ DL++++VD+P
Sbjct: 15 VGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPD 74
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ GF LL LV + ++PVIM+S+ V K + GA DYL+KPVR EL+N+WQH
Sbjct: 75 MDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQH 131
Query: 150 VWRR------QSSMVSGNETQDESVGQQKIEATSEND 180
V R+ +S++ +G+ D++ ++K + E +
Sbjct: 132 VVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEE 168
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 205 (77.2 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 42/120 (35%), Positives = 72/120 (60%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSI 90
+ VL V+ R ++ +LR S YRVT V +A E+L G N+++I+T+ +P +
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
+G+ LL V E K IPV++MSS++ + + +C+ GA D+L+KPVR +++ L +
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 222 (83.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/126 (39%), Positives = 77/126 (61%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LR+L+V+ D S I+ +L + Y+VT A +L+ R + DL+L++V +P ++
Sbjct: 11 LRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMN 70
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G+ LL V E+ ++PVIMMS +TV + GA DYL+KP+R EL+N+WQHV
Sbjct: 71 GYNLLQQVGLLEM--DLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVV 128
Query: 152 RRQSSM 157
RR+ M
Sbjct: 129 RRKCVM 134
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 223 (83.6 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 49/126 (38%), Positives = 78/126 (61%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+ LRVL+V+ D + +I+ +L+K SY VT +A +L+ R D+++++V++P
Sbjct: 9 VGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPD 68
Query: 90 ISGFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148
+ GF LL EH + ++PVIMMS S V K + GA DYL+KP+R EL+ +WQ
Sbjct: 69 MDGFKLL----EHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQ 124
Query: 149 HVWRRQ 154
HV R++
Sbjct: 125 HVLRKK 130
Score = 37 (18.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 438 SYPQQRPCPVPVSVKVNSTNQAMHK 462
S+ QQ+P P S NS M +
Sbjct: 366 SFLQQQPLPSQSSYVANSAPSLMEE 390
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 41/113 (36%), Positives = 71/113 (62%)
Query: 36 LVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
++ DDS+ R ++TALLR+S YR G +A E+L P N+ +I+T+ +P ++G+
Sbjct: 93 VMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGSEP-NVSMIITDYWMPEMTGY 147
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
LL + E K IPV++MSS++ + + +C+ GA D+L+KPVR ++ +
Sbjct: 148 DLLKKIKESSELKQIPVVIMSSENVPTRISRCLEEGAEDFLLKPVRPADISRI 200
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 204 (76.9 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 44/124 (35%), Positives = 74/124 (59%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL+++ D S ++ LL K SY+VT + +A + P+ +DL++++ P+
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 92 GFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G L+++ K IP ++M+S +TV K + GA D+L+KPVR EL N+WQH+
Sbjct: 71 GL----LILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 151 WRRQ 154
+R+Q
Sbjct: 127 FRKQ 130
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 204 (76.9 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 44/124 (35%), Positives = 74/124 (59%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL+++ D S ++ LL K SY+VT + +A + P+ +DL++++ P+
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTED 70
Query: 92 GFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G L+++ K IP ++M+S +TV K + GA D+L+KPVR EL N+WQH+
Sbjct: 71 GL----LILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 151 WRRQ 154
+R+Q
Sbjct: 127 FRKQ 130
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 212 (79.7 bits), Expect = 9.1e-14, P = 9.1e-14
Identities = 50/147 (34%), Positives = 81/147 (55%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+L+ + DD R+I+ LL+K Y VT VP+G AWE + + DL+LT+V +P I+
Sbjct: 160 VRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTDVMMPHIT 219
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK--CMMRGAADYLVKPVRRNELRN---- 145
GF LL + +H + ++IPVI+MS +V Y + G D+L KP+ + L+
Sbjct: 220 GFDLLQRINDHPVHRHIPVILMSGT-AVDYKYANDTIKIGGQDFLTKPIAKELLKKKIDT 278
Query: 146 LWQHVW-RRQSSMVSGNETQDESVGQQ 171
+ Q +W RR+ Q+ G +
Sbjct: 279 VLQSIWQRRKEEEYKATLAQEREKGNK 305
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 187 (70.9 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 47/177 (26%), Positives = 94/177 (53%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-----KG----RPRNIDLIL 82
L VL V+ R+++ LLR SS +VT V G +A + L KG + ++LI+
Sbjct: 24 LHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNLKDLKVNLIV 83
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
T+ +P +SG+ LL + E + +PV++MSS++ + + +C+ GA ++L+KPV+ +
Sbjct: 84 TDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLAD 143
Query: 143 LRNLWQHVWRRQSSMVSG-NETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGE 198
++ + Q + R ++ + + + + ++S +D S S ++S+ E
Sbjct: 144 VKRIKQLIMRNEAEECKILSHSNKRKLQEDSDTSSSSHDDTSIKDSSCSKRMKSESE 200
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 186 (70.5 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 50/172 (29%), Positives = 90/172 (52%)
Query: 36 LVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVL-----KGRPRN---------ID 79
++ DDS R+++ LL+ SS++VT V G KA E L + P + ++
Sbjct: 11 VLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEVAVN 70
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
LI+T+ +P ++G+ LL + E ++IPV++MSS + S + +C+ GA ++ +KPVR
Sbjct: 71 LIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPVR 130
Query: 140 RNELRNLWQHVWRRQSSMVSGNET--QDESVGQQKIEATSENDAASNHSSGY 189
+++ L H+ + + E Q S TSEN ++S S+ +
Sbjct: 131 LSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSSSTSSNSH 182
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 184 (69.8 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 45/126 (35%), Positives = 72/126 (57%)
Query: 29 RMALRVLLVEADDSTRQIVTALLRKS----SYRVTAVPDGLKAWEVL----KGRPRNIDL 80
R RVLLV+ R++V LL S S+ V AV KA E L +G+ + ID+
Sbjct: 5 RGVTRVLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQAIDM 64
Query: 81 ILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR 140
+LT+ +P ++G+ LL + K IPVI+MSS++ + +CM GA D++VKP++
Sbjct: 65 VLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQS 124
Query: 141 NELRNL 146
+++ L
Sbjct: 125 KDVQRL 130
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 181 (68.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 45/141 (31%), Positives = 80/141 (56%)
Query: 33 RVLLVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVL-----KGRPR----NIDLI 81
+V ++ DDS R ++ LLR +S +VTAV G +A E L K +DLI
Sbjct: 32 QVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAAVEFDRLKVDLI 91
Query: 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141
+T+ +P ++G+ LL + E K +PV++MSS++ ++ + +C+ GA D+L+KPV+
Sbjct: 92 ITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLA 151
Query: 142 ELRNLWQHVWRRQSSMVSGNE 162
+++ L ++ R GN+
Sbjct: 152 DVKRLRSYLTRDVKVAAEGNK 172
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 181 (68.8 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 44/168 (26%), Positives = 92/168 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-----KG----RPRNIDLIL 82
L VL V+ R+++ LL+ S+ +VT V G +A + L G + ++LI+
Sbjct: 18 LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIV 77
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
T+ +P ++G+ LL + E + IPV++MSS++ + +CM+ GA ++L+KPV+ +
Sbjct: 78 TDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLAD 137
Query: 143 LRNLWQHVWRR-QSSMVSGNETQDESVGQQKIEATSENDAASNHSSGY 189
++ L + + R ++ + + + Q I+++ + + S+ SS +
Sbjct: 138 VKRLKELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSSTSSSSSSH 185
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 150 (57.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 35/142 (24%), Positives = 74/142 (52%)
Query: 77 NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136
+++LI+T+ +P ++G+ LL V K+IPV++MSS++ + + +C+ GA ++ +K
Sbjct: 73 DVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLK 132
Query: 137 PVRRNELRNLWQHVWRRQSSMVSGNETQDE---SVGQQKIEATSENDAASNHSSGYMACI 193
PV+ +++ L H+ +R+ + D+ + A + +AA+ + G ++
Sbjct: 133 PVKLADMKKLKSHLLKRKQQLPMAAAAPDKPPHKPDEAAASAAAIAEAATAQTDGIISDC 192
Query: 194 QSKGEFIEKGSD-EQSSCTKPD 214
G K + EQ + PD
Sbjct: 193 SCSGSSKRKAAAMEQEVISSPD 214
Score = 75 (31.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 33 RVLLVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNID 79
R ++ DDS R+++ LL+ SSY+VT V G KA E+L R D
Sbjct: 9 RFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDD 57
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 188 (71.2 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 50/182 (27%), Positives = 94/182 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL+ + D S I+ L+K Y+VT + KA L+ DL + +V+
Sbjct: 42 LRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGD 101
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV- 150
F L+ + ++P+I++S DSV +V K M+ GAADYL+KP+R +LR +++H+
Sbjct: 102 IFRFLSEIGSE---MDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV 158
Query: 151 --WRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQS 208
R + S+V+G + E +K + ++ + + S +C++++ ++
Sbjct: 159 KKMRERRSVVTG---EAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDRHDHNDR 215
Query: 209 SC 210
+C
Sbjct: 216 AC 217
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 182 (69.1 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 49/166 (29%), Positives = 88/166 (53%)
Query: 6 LNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGL 65
L E+ + G GI L + VL V+ R ++ LLR +S +VTAV G
Sbjct: 10 LRRSEMMSVGGIGGIESAPLDLDEV--HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGW 67
Query: 66 KAWEVL-----KGRPR----NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116
+A E L K +DLI+T+ +P ++G+ LL + E + +PV++MSS+
Sbjct: 68 RALEFLGLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSE 127
Query: 117 DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNE 162
+ ++ + +C+ GA D+L+KPV+ +++ L H+ + + +GN+
Sbjct: 128 NVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHL-TKDVKLSNGNK 172
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 168 (64.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 47/157 (29%), Positives = 84/157 (53%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL------KG---RPRNIDLIL 82
L VL V+ R+ + LLR SS +VT V +A + L K ++LI+
Sbjct: 25 LHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNLIM 84
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
T+ +P ++G+ LL + E + +PV++MSS++ + + +C+ GA D+L+KPV+ ++
Sbjct: 85 TDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSD 144
Query: 143 LRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSEN 179
++ L R S M + + +S+ QK E +EN
Sbjct: 145 VKRL------RDSLMKVEDLSFTKSI--QKRELETEN 173
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 167 (63.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 42/129 (32%), Positives = 74/129 (57%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK-GRPRNID---------LI 81
L VL V+ + R++V +L+ SS +VT +GL+A E L G P+ D LI
Sbjct: 20 LHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVNLI 79
Query: 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141
+T+ +P ++GF LL V E K +PV+++SS++ + + KC+ GA ++ KP++ +
Sbjct: 80 ITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLKLS 139
Query: 142 ELRNLWQHV 150
++ L H+
Sbjct: 140 DVEKLKCHL 148
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 40/125 (32%), Positives = 70/125 (56%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL--KGRPRN--------IDLI 81
L VL V+ R+ + LLR SS +VT V +A + L G + I+LI
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141
+T+ +P ++G+ LL + E + IPV++MSS++ + + +C+ GA D+L+KPV+
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 142 ELRNL 146
+++ L
Sbjct: 145 DVKRL 149
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 145 (56.1 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 31/106 (29%), Positives = 59/106 (55%)
Query: 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
I+LI+T+ +P ++G+ LL V E ++IPV++MSS++ + + +C+ GA ++ +KP
Sbjct: 72 INLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKP 131
Query: 138 VRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 183
V+ +L L H+ + + S E + K E E + +S
Sbjct: 132 VKLADLTKLKPHMMKTKLKKESEKPVAIEEIVVSKPEIEEEEEESS 177
Score = 65 (27.9 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 36 LVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVL 71
++ DDS R+++ LL+KSS +VT V G KA E L
Sbjct: 11 VLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFL 48
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 139 (54.0 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 29/97 (29%), Positives = 57/97 (58%)
Query: 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
++LI+T+ +P ++G+ LL V E ++IPV++MSS++ + + +C+ GA ++ +KP
Sbjct: 74 VNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKP 133
Query: 138 VRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIE 174
VR +L L H+ + + N+ +E K+E
Sbjct: 134 VRLADLNKLKPHMMKTKLK----NQKLEEIETTSKVE 166
Score = 66 (28.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 36 LVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVL 71
++ DDS R+++ LL+KSS +VT V G KA E L
Sbjct: 11 VLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFL 48
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 151 (58.2 bits), Expect = 7.1e-10, P = 7.1e-10
Identities = 34/128 (26%), Positives = 77/128 (60%)
Query: 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL 87
Q++ ++L+V+ +++ R +T LL + + V +V +G +A L+ R +++I+T++++
Sbjct: 3 QQIKKKILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQ--QREVNVIVTDINM 60
Query: 88 PSISGFALLTLVMEHEICKNIP---VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
P ++G L E+ K+ P VIM+++ V + + M GA +Y+ KPV+ +EL+
Sbjct: 61 PEMNGITFL-----RELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELK 115
Query: 145 NLWQHVWR 152
++ +++
Sbjct: 116 SILTKIFK 123
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 150 (57.9 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 33/117 (28%), Positives = 68/117 (58%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+V+ R +V+ L + + RVTAV ++A L ++D+I+++ +P ++G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFLDSE-HDVDMIVSDYCMPDMTGY 64
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
LL V + ++PV++ SS + + KC+ GA DY++KPV+ ++ + +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/107 (29%), Positives = 59/107 (55%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+VE ++S ++ + LL Y V V DG A + + P DLI+ ++ LP + G
Sbjct: 5 RILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMDG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
F + ++ ++IPV+M++++ S K + GA+ Y+ KP +
Sbjct: 63 FEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFK 109
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 170 (64.9 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 62/303 (20%), Positives = 141/303 (46%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ +LL++ D ++ +T++L++ S RV +V KA +++ + + I LI+ +++P I
Sbjct: 13 ISILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHID 72
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
+ L ++ K+IP+I+++ + + + A L KP+ ++++N+WQHV+
Sbjct: 73 SHSFLNALL----LKDIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVF 128
Query: 152 RRQSSMVSG-NETQD-ESVGQQ---KIEATSENDAASNHSSGYMACIQSKGEFIEKGS-- 204
++S + N T+D E+V + +IEA N S A + + FI+ S
Sbjct: 129 SKKSQELKKINITEDQENVMDKDTYQIEAFRANLKRQRISQ---ASLLGRRPFIDTFSTY 185
Query: 205 ---DEQSSCTKPDFEAESAHVEDMPDLSRQLWGKSLQNDVKMQNHEARVNY-GQKSLVPV 260
++ S +++ ++ ++ + R+ W KS+ + N E + + S++
Sbjct: 186 ETFQKRKSIANVEWKTTPSYAIEIEN-KRKEWKKSVGRRKSLWNSERHMKFIAAISILGE 244
Query: 261 TEAQGSEVAACKEANTRAHFDEDTELETHRSDVILTSEVCNVPVNSPRQVIDFMSAFNNH 320
+ + + H + L+ +++ + S +P N R + +N+
Sbjct: 245 EDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQIDQISYT--LPRNESRSIDKTFEYPSNY 302
Query: 321 KPP 323
K P
Sbjct: 303 KYP 305
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 163 (62.4 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 45/150 (30%), Positives = 88/150 (58%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++ VL+V+ ++ R++++ +L + +TA +GL+A VL + IDLIL ++++P +
Sbjct: 4 SISVLVVDDEEMNRELLSVMLDGLATPITA-QNGLEALRVLD-KNSAIDLILLDLEMPEL 61
Query: 91 SGFALLTLVMEHEICKNIPVIMMS-SQDSVSTVYKCMMRGAADYLVKPVRRNELR-NLWQ 148
+GFA L + +H + +IPVI+++ S+D V+ + + GA D+L KP ELR +
Sbjct: 62 NGFATLATLKKHPLWCDIPVIVLTASKDEVT---RTLRLGANDFLAKPYDTEELRLRVMN 118
Query: 149 HVWRRQSSMVSGNETQDESVGQQKIEATSE 178
HV R +V ++ + + ++ T+E
Sbjct: 119 HV--RAKKLVDLSQDVNGILEREVARKTAE 146
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 166 (63.5 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 43/141 (30%), Positives = 71/141 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
L VLLV+ +R++V+ LL +RVT DG++A + GR DL+L +V +P +
Sbjct: 546 LSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAI-GREA-FDLVLMDVQMPVMD 603
Query: 92 GFALLTLVMEHEIC--KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN-LWQ 148
GF + + E +P+I ++++ C+ GA DYL KPV +ELR + +
Sbjct: 604 GFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSELRRVISR 663
Query: 149 HVWRRQSSMVSGNETQDESVG 169
H R E + ++ G
Sbjct: 664 HCCRESKPSALSAENRPDAAG 684
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/114 (26%), Positives = 62/114 (54%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA ++ V+ S RQ+V+ L+++ Y V DG A L G +D+++T++++P+
Sbjct: 1 MAKTIMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAGT--RVDMVITDLNMPN 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G L+ V + + P++M++++ S + GA ++VKP + +L
Sbjct: 59 LDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/114 (26%), Positives = 62/114 (54%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA ++ V+ S RQ+V+ L+++ Y V DG A L G +D+++T++++P+
Sbjct: 1 MAKTIMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLAGT--RVDMVITDLNMPN 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G L+ V + + P++M++++ S + GA ++VKP + +L
Sbjct: 59 LDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFKPEQL 112
>UNIPROTKB|Q9KM66 [details] [associations]
symbol:cqsS "CAI-1 autoinducer sensor kinase/phosphatase
CqsS" species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 164 (62.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSIS 91
R+L+V+ + S R LL + Y V DG EVLK +NIDL+L ++++P++
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGS---EVLKHMESQNIDLVLMDIEMPNVG 625
Query: 92 GFALLTLVM--EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
G L+ EHE KNIP+I + +S T+ G D++VKP R+ L N
Sbjct: 626 GLEATRLIRNSEHEY-KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>TIGR_CMR|VC_A0522 [details] [associations]
symbol:VC_A0522 "sensor histidine kinase/response
regulator LuxN" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005886 GO:GO:0005524
GO:GO:0006355 GO:GO:0005622 GO:GO:0004721 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109 eggNOG:COG0745
PIR:G82448 RefSeq:NP_232913.1 ProteinModelPortal:Q9KM66
DNASU:2612235 GeneID:2612235 KEGG:vch:VCA0522 PATRIC:20085594
KO:K10916 OMA:AIFLHIL ProtClustDB:CLSK869633 BindingDB:Q9KM66
ChEMBL:CHEMBL1921662 Uniprot:Q9KM66
Length = 686
Score = 164 (62.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 41/116 (35%), Positives = 62/116 (53%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSIS 91
R+L+V+ + S R LL + Y V DG EVLK +NIDL+L ++++P++
Sbjct: 569 RILVVDDNQSIRTFTAILLEQQGYEVVQANDGS---EVLKHMESQNIDLVLMDIEMPNVG 625
Query: 92 GFALLTLVM--EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
G L+ EHE KNIP+I + +S T+ G D++VKP R+ L N
Sbjct: 626 GLEATRLIRNSEHEY-KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLN 680
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
R+L+ E + R ++ A ++ + V G +A +L R R +DLI+T++++P I+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP-RER-LDLIITDINMPDIN 60
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
G L++ V + ++IP+ ++S++ S K + GA +YLVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ S R +V+ LR + Y V DG A L G I+LI+++V++P++ G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGD--KINLIISDVNMPNMDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ L V +H K PVIM++++ + + M GA ++VKP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
R+L+ E + R ++ A ++ + V G +A +L R R +DLI+T++++P I+
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLP-RER-LDLIITDINMPDIN 60
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
G L++ V + ++IP+ ++S++ S K + GA +YLVKP L++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/105 (32%), Positives = 59/105 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ S R +V+ LR + Y V DG A L G I+LI+++V++P++ G
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKLNGD--KINLIISDVNMPNMDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ L V +H K PVIM++++ + + M GA ++VKP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|CPS_0681 [details] [associations]
symbol:CPS_0681 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_267431.1 ProteinModelPortal:Q488T3
STRING:Q488T3 GeneID:3522148 KEGG:cps:CPS_0681 PATRIC:21464685
BioCyc:CPSY167879:GI48-768-MONOMER Uniprot:Q488T3
Length = 246
Score = 152 (58.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LLVE D S V+ L + + VT V G +V+K D++L +V LP ++G
Sbjct: 4 ILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIK--KNTTDIVLLDVMLPGLNGI 61
Query: 94 ALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ L+ +HE K +P+IM++++ D V + GA DY++KPVR L
Sbjct: 62 EVCRLIRQHEQSKQVPIIMLTARADEFDEVIG-LEAGADDYVIKPVRPRAL 111
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 136 (52.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 33/126 (26%), Positives = 67/126 (53%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+++L+V+ + R+I+ LLR + T+ DGL A +L+ D ++T+ ++P +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGA--FDFLVTDWNMPGM 58
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
+G LL V E K++PV+M++++ + + G Y+VKP L+ + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 151 WRRQSS 156
+ R +S
Sbjct: 119 FERVNS 124
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 157 (60.3 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 38/117 (32%), Positives = 65/117 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA++VLLVE D + R+ + L + + AV +A E + P L++++V++P
Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP--FSLVVSDVNMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ G LL L+ + +PV++M++ +V + M +GAADYLVKP L +L
Sbjct: 59 MDGHQLLGLLRARQ--PQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDL 113
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 134 (52.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/123 (26%), Positives = 63/123 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+++L+V+ + R+IV LLR + T DGL A +LK + D ++T+ ++P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G LL + E K++PV+M++++ + + G Y+VKP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 151 WRR 153
+ R
Sbjct: 127 FER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 134 (52.2 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/123 (26%), Positives = 63/123 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+++L+V+ + R+IV LLR + T DGL A +LK + D ++T+ ++P +
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G LL + E K++PV+M++++ + + G Y+VKP L+ +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 151 WRR 153
+ R
Sbjct: 127 FER 129
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 40/137 (29%), Positives = 70/137 (51%)
Query: 20 IAKWETFLQRMALRVLL----VEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP 75
++KWE F + + + +LL + D S+ + L Y VT D +A + P
Sbjct: 8 LSKWENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNP 67
Query: 76 RNIDLILTEVDLPSIS-GFALLTLVMEHEICKNI-PVIMMSSQDSVSTVYKCMMRGAADY 133
+ + + EV++ + S F L E K++ P IM+S+ ++T KC+ GA ++
Sbjct: 68 ESFHIAIVEVNMSAESESFKFL------EAAKDVLPTIMISTDHCITTTMKCIALGAVEF 121
Query: 134 LVKPVRRNELRNLWQHV 150
L KP+ +L+N+WQHV
Sbjct: 122 LQKPLSPEKLKNIWQHV 138
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 31/114 (27%), Positives = 58/114 (50%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAW-EVLKGRPRNIDLILTEVDLPS 89
AL+V++++ + R+ LL+ + V DG A ++ PR +I ++ +P
Sbjct: 7 ALKVMVIDDSKTIRRTAETLLKNAGCEVITAIDGFDALAKIADNHPR---IIFVDIMMPR 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G+ L+ + K+ PVIM+SS+D + K + G+ +L KP + EL
Sbjct: 64 LDGYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEEL 117
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 33/123 (26%), Positives = 64/123 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+++L+V+ + R+I+ LLR + T DG A VL +ID ++T+ ++P +
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLNSG--SIDFLVTDWNMPGM 58
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
+G LL V E K++PV+M++++ + + G Y+VKP L+ + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 151 WRR 153
+ R
Sbjct: 119 FER 121
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 27/108 (25%), Positives = 57/108 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +VL V+ + R ++ L + + DG++ EVL+ N D+I+T++++P
Sbjct: 1 MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLE--QSNPDVIVTDINMPR 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF + V +E + IP+++++++ + GA ++VKP
Sbjct: 59 LDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 34/118 (28%), Positives = 60/118 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL V+ S RQ+V+ L+ + Y V DG +A + K + D+I+++V++P ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
F + V K P++M++++ S + GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 34/118 (28%), Positives = 60/118 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL V+ S RQ+V+ L+ + Y V DG +A + K + D+I+++V++P ++G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREA--LAKAQKARFDVIISDVNMPVMTG 66
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
F + V K P++M++++ S + GA +LVKP L Q V
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRV 124
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 133 (51.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 27/108 (25%), Positives = 57/108 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +VL V+ + R ++ L + + DG++ EVL+ N D+I+T++++P
Sbjct: 1 MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLE--QSNPDVIVTDINMPR 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF + V +E + IP+++++++ + GA ++VKP
Sbjct: 59 LDGFGFIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKP 106
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ ++L+V+ + RQ+V A L+ ++Y+VT DG +A ++ + D ILT+ ++P
Sbjct: 1 MSKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQ--RFDFILTDQNMPR 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKP 137
+ G L+ + P+IM++++ D + K + GA ++VKP
Sbjct: 59 MDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAV--GATGWMVKP 106
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 131 (51.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ ++L+V+ + RQ+V A L+ ++Y+VT DG +A ++ + D ILT+ ++P
Sbjct: 1 MSKKILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQ--RFDFILTDQNMPR 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKP 137
+ G L+ + P+IM++++ D + K + GA ++VKP
Sbjct: 59 MDGLTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAV--GATGWMVKP 106
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 153 (58.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 36/108 (33%), Positives = 60/108 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M++ VLLVE D S R+ + L + Y AV +A + +P L++++V++P
Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQP--FSLVISDVNMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ G LL+L+ +PV++M++ +V M +GAADYLVKP
Sbjct: 59 MDGHQLLSLLRSRH--PQLPVLLMTAHGAVDRAVDAMRQGAADYLVKP 104
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 152 (58.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M R+L+V+ +++ R ++ A+LRK Y DG A + + D IL ++ +P
Sbjct: 1 MKKRILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAA--LAQASAAAYDFILCDIRMPI 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ G L + E+ VIMMS+ +V CM GA DY+ KP + +E+ + +
Sbjct: 59 MDGVGFLRTFQKAELPGT--VIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRK 116
Query: 150 VWRRQSSMVSGNETQDESVGQQ 171
R+ + + N E VG++
Sbjct: 117 AEERER-LKNENRRLREVVGRE 137
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 42/140 (30%), Positives = 74/140 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEV-LKGRPRNIDLILTEVDLP 88
M+ +LLVE D S +++V L K ++VT DG + + LKG + DLI+ ++ +P
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKG---SFDLIILDIMMP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148
+ G ++ ++ E +P++MMS++D+ + GA DY+ KP EL +
Sbjct: 58 KLDGLEVVRIIREKSA---VPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVK 114
Query: 149 HVWRRQSSMVSGNETQDESV 168
RR S+ S ET ++ +
Sbjct: 115 AGIRR-STKYSATETTEKMI 133
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 43/143 (30%), Positives = 74/143 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSIS 91
++L+VE D + R+++ L K Y++ DGLKA + + +P L++ +V LP +
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKP---SLVILDVMLPGMD 61
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
GF L L+ ++P++M++++ S + + GA DYL KP EL + +
Sbjct: 62 GFELCRLIRAES---SVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALL 118
Query: 152 RRQSSMVSGNETQDESVGQQKIE 174
RR S M +Q E V KI+
Sbjct: 119 RR-SQM---QNSQPEPVSGLKID 137
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 151 (58.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M + VLLVE D S R+ + L + Y AV +A + +P L++++V++P
Sbjct: 1 MPINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAAEAQP--FSLVISDVNMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ G LL+L+ +PV++M++ +V M +GAADYLVKP
Sbjct: 59 MDGHQLLSLLRSRH--PQLPVLLMTAHGAVDRAVDAMRQGAADYLVKP 104
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 32/105 (30%), Positives = 56/105 (53%)
Query: 35 LLVEADDST-RQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
LLV D ST R+I+ L + Y V G++AWE L + +++T+ ++P ++G
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNG 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
L+ V K IP+IM++++ + V + G +Y+VKP
Sbjct: 62 LDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 106
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSI 90
++VL+V+ + RQ + + S+ V +GL+A E VL G DL+ +V++P +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALEKVLNGE---FDLMTVDVNMPKM 57
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
G+ + V E + ++PVI++S++ K + GA YLVKPV
Sbjct: 58 DGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA VL+V+ S RQ+V L+ + Y V DG A L G+ + LI+++V++P+
Sbjct: 1 MAKSVLVVDDSSSVRQVVGIALKSAGYDVIEACDGKDALGKLTGQ--KVHLIISDVNMPN 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ G + V + K P+IM++++ S + GA ++VKP
Sbjct: 59 MDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKP 106
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSI 90
++VL+V+ + RQ + + S+ V +GL+A E VL G DL+ +V++P +
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEALEKVLNGE---FDLMTVDVNMPKM 57
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
G+ + V E + ++PVI++S++ K + GA YLVKPV
Sbjct: 58 DGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 127 (49.8 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 29/107 (27%), Positives = 58/107 (54%)
Query: 34 VLLVEADDSTRQIVT-ALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
VL+VE + RQ++ AL R + DG+ + L IDLILT++++P + G
Sbjct: 6 VLIVEDSPTMRQLIAFALKRIPGISIVEASDGVDGLKKLSAHA--IDLILTDINMPVMDG 63
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
L++LV +++P+ +++++ + + + GA Y+ KP++
Sbjct: 64 LKLVSLVRSDPSHRHLPIAIITTEGAAEDRERALALGANAYITKPIQ 110
>TIGR_CMR|GSU_1302 [details] [associations]
symbol:GSU_1302 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845 RefSeq:NP_952355.1
ProteinModelPortal:Q74DL4 GeneID:2686509 KEGG:gsu:GSU1302
PATRIC:22025379 HOGENOM:HOG000131064 OMA:DQADAFE
ProtClustDB:CLSK743117 BioCyc:GSUL243231:GH27-1286-MONOMER
Uniprot:Q74DL4
Length = 835
Score = 152 (58.6 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+L VLLVE +D R + LL + RVTAV +G +A +VL R R+ +L+ ++ +P +
Sbjct: 575 SLEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVL--RDRDFELVFMDISMPEM 632
Query: 91 SGFALLTLVMEHEI---CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
G + E ++ P++ +++ + +C+ YL KP+ R ELR +
Sbjct: 633 DGIEATWAIRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLLREELRRM 691
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 149 (57.5 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/136 (27%), Positives = 71/136 (52%)
Query: 24 ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83
E L+ +LLV+ D TR+++ L S YRV DG +A E+ R + DL+L
Sbjct: 13 ECALENAPPLILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVEMF--RELSPDLVLL 70
Query: 84 EVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
++ +P + G+ + +++P+I+M++ D +++ + GA D++ KPV L
Sbjct: 71 DIMMPVMDGYGACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGATDFIEKPVNWMLL 130
Query: 144 RNLWQHVWRRQSSMVS 159
+ ++ R + + VS
Sbjct: 131 NHRLPYLLRARDAFVS 146
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 140 (54.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 38/115 (33%), Positives = 64/115 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M R+L+VE ++ ++V L Y G +A E K N DLIL +V LP+
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAME--KFGNGNWDLILLDVMLPN 58
Query: 90 ISGFALLTLV-MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
ISG +L + +++ + IP+I+++++DSV + +GA+DY+ KP + EL
Sbjct: 59 ISGLEVLRRIRLKNAV---IPIILLTARDSVVDKVSGLDQGASDYITKPFQIEEL 110
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 139 (54.0 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 39/136 (28%), Positives = 69/136 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M ++L++E + + + V+ L Y V +G + + ++ DLIL ++ LP
Sbjct: 1 MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDT--ALEKDFDLILLDLMLPE 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ GF + T ++ E K ++MM+++DSV + + RGA DY+VKP EL +
Sbjct: 59 MDGFEI-TRRLQAE--KTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRA 115
Query: 150 VWRRQSSMVSGNETQD 165
++RRQ E D
Sbjct: 116 IFRRQEIETKTKEKGD 131
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 124 (48.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 25/108 (23%), Positives = 56/108 (51%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M RVL V+ + R ++ L + + DG++ E L N D+I+T++++P
Sbjct: 1 MKKRVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGVEGLEKLD--TANPDVIVTDINMPR 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF + V +++ + +P+++++++ + GA ++VKP
Sbjct: 59 LDGFGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKP 106
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 124 (48.7 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 31/118 (26%), Positives = 64/118 (54%)
Query: 35 LLVEADDST-RQIV-TALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
LLV D ST R+I+ L R V G++AW++L + ++ +++T+ ++P ++G
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLT-KNEDVKVLITDWNMPEMNG 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
L+ V + +++P+IM++++ + V + G +Y+VKP L+ + V
Sbjct: 62 LELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
>TIGR_CMR|CBU_1227 [details] [associations]
symbol:CBU_1227 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483 RefSeq:NP_820222.2
ProteinModelPortal:Q83CA1 PRIDE:Q83CA1 GeneID:1209132
KEGG:cbu:CBU_1227 PATRIC:17931191 OMA:THETFDI
ProtClustDB:CLSK914625 BioCyc:CBUR227377:GJ7S-1215-MONOMER
Uniprot:Q83CA1
Length = 232
Score = 139 (54.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+RVLLVE D+ + A L++ + + V DG A +VL D+I+ ++ LP S
Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +L + E PV++++++D+V K + G+ DY+ KP EL
Sbjct: 70 GLDVLKTIREKN--DPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEEL 119
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 138 (53.6 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 46/153 (30%), Positives = 77/153 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKA-WEVLKGRPRNIDLILTEVDLPSI 90
+++LL+E + T++ VT L ++ Y + AV DG + LK + LI+ ++ LP +
Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD---DYALIILDIMLPGM 57
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL-----RN 145
G+ +L + K PVI ++++DSV + + GA DYLVKP +EL
Sbjct: 58 DGWQILQTL---RTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114
Query: 146 LWQHVWRRQSSMVSG--NETQDESVGQQKIEAT 176
L QH + +SG ++ SV + I T
Sbjct: 115 LRQHHALNSTLEISGLRMDSVSHSVSRDNISIT 147
>TIGR_CMR|CBU_0367 [details] [associations]
symbol:CBU_0367 "DNA-binding response regulator PhoB"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=ISS] [GO:0006817 "phosphate
ion transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 TIGRFAMs:TIGR02154
RefSeq:NP_819407.1 ProteinModelPortal:Q83EF6 PRIDE:Q83EF6
GeneID:1208249 KEGG:cbu:CBU_0367 PATRIC:17929423 OMA:YRFSARY
ProtClustDB:CLSK914019 BioCyc:CBUR227377:GJ7S-368-MONOMER
Uniprot:Q83EF6
Length = 248
Score = 140 (54.3 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 43/161 (26%), Positives = 80/161 (49%)
Query: 14 MNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG 73
M N I + F+ +++L++E + + R +V L + + D KA + L
Sbjct: 1 MRYNSEILRTNEFISVRKIKLLIIEDEIAIRDMVRFSL-PDEFELLDAEDTAKAIKQLAA 59
Query: 74 R-PRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132
+ P DLIL + LP SG + + + EI ++IP+++++++ + +M GA D
Sbjct: 60 QIP---DLILLDWMLPGKSGIEFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADD 116
Query: 133 YLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKI 173
Y+ KP +EL + + RR ++S N Q+ +G KI
Sbjct: 117 YITKPFSPDELIARIRAILRR-GPLISSN--QEIKIGDIKI 154
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 123 (48.4 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +V++V+ + R ALL + + +G++A E P +DL L ++++P
Sbjct: 1 MMKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPK 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+ GF L+ + IP +M+S++ S + + GA Y+VKPV EL+
Sbjct: 59 MDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|DET_0130 [details] [associations]
symbol:DET_0130 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034820
RefSeq:YP_180880.1 ProteinModelPortal:Q3ZA69 STRING:Q3ZA69
GeneID:3230504 KEGG:det:DET0130 PATRIC:21607349 OMA:QIVQAKN
ProtClustDB:CLSK837608 BioCyc:DETH243164:GJNF-130-MONOMER
Uniprot:Q3ZA69
Length = 123
Score = 123 (48.4 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+ + ++ RQ+V +L K Y++ +G +A V + R ++ DLIL ++ +P +
Sbjct: 4 MKILIADDEEHVRQLVCGILDKD-YQIVQAKNGEEA--VKESREQDFDLILMDIMMPKLD 60
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G A ++ + IP++M++ GA Y+ KP ELR
Sbjct: 61 GLAACCMLKGDKQTSAIPIVMLTGVGYELNKKLSQQLGADGYITKPFSPRELR 113
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 123 (48.4 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +V++V+ + R ALL + + +G++A E P +DL L ++++P
Sbjct: 1 MMKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMP--VDLFLVDINMPK 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+ GF L+ + IP +M+S++ S + + GA Y+VKPV EL+
Sbjct: 59 MDGFTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQ 113
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 139 (54.0 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 54/233 (23%), Positives = 105/233 (45%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+LLVE D + + L + + V + G A L P + D+++ ++ LP I
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTAL-AVPSH-DMVILDLGLPDID 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L + + ++PVI+++++DS+ + K + GA DYL KP EL + +
Sbjct: 59 GLLVLKEIRAKK--NDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIE 116
Query: 152 RR----QSSMVSGNETQDESVGQQK--IEATSENDAASNHSSGYMACIQSKGEFIEKGSD 205
RR SSM++ + ++ + ++ N+ ++ G + E S
Sbjct: 117 RRLGTASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEV--HFSK 174
Query: 206 EQSSCTKPDFEAESAHVEDMPDLSRQL--WGKS-LQNDVKMQNHEARVNYGQK 255
++ K E + ++ + +L WG+ L N V++ H+ R N K
Sbjct: 175 KEFMVLKALME-NAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPNK 226
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 138 (53.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 33/114 (28%), Positives = 64/114 (56%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR-PRNIDLILTEVDLPSI 90
+++L+V+ + +++ L + Y+V DG++A E++K P DL++ ++ LP +
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELP---DLVILDIMLPGM 57
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNEL 143
SG + + +E IP+IM+S++ + V + + GA DY+VKP EL
Sbjct: 58 SGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLEL-GADDYMVKPFSPREL 110
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 145 (56.1 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++LLVE D S R+ + L + Y V G +A +L + DL++++V +P I G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEA--ILALKQHQFDLVISDVQMPGIGG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
LL + +H +PV++M++ ++ + + GA DYL KP L N
Sbjct: 63 LGLLNYLQQHH--PKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 145 (56.1 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++LLVE D S R+ + L + Y V G +A +L + DL++++V +P I G
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEA--ILALKQHQFDLVISDVQMPGIGG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
LL + +H +PV++M++ ++ + + GA DYL KP L N
Sbjct: 63 LGLLNYLQQHH--PKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 137 (53.3 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 35/127 (27%), Positives = 67/127 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+V+ + S R ++ L Y V DG EVL+ D+++ +V LP
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGR---EVLERWNEGPDVLILDVMLPDTD 57
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL----RNLW 147
G+ LL L E + ++IPV+M++++ ++ + GA DY+ KP EL +N+
Sbjct: 58 GYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMT 115
Query: 148 QHVWRRQ 154
+ V +++
Sbjct: 116 RRVKKKE 122
>TIGR_CMR|SO_1228 [details] [associations]
symbol:SO_1228 "torcad operon transcriptional regulatory
protein TorR" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 RefSeq:NP_716851.1 ProteinModelPortal:Q8EHJ3
SMR:Q8EHJ3 GeneID:1169054 KEGG:son:SO_1228 PATRIC:23522112
OMA:QHIDLVM Uniprot:Q8EHJ3
Length = 236
Score = 138 (53.6 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 57/205 (27%), Positives = 95/205 (46%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA VL+V+ + R + K YRV DG + W + ++IDLI+ +++LP
Sbjct: 1 MAYSVLVVDDEVVIRARLKGYFEKEGYRVVEAADGEQMW--YEFNRQHIDLIMLDINLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQD-SVSTVYKCMMRGAADYLVKPVRRNELR-NLW 147
+ G L+L E ++ +I++S +D S+ + M GA DY+ KP EL +
Sbjct: 59 VDG---LSLTRELRSRSHVGIILVSGRDESIDKIVGLEM-GADDYVTKPFELRELLVRVK 114
Query: 148 QHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDEQ 207
+WR S+V E Q ++ S+ D + GY + S+ + +G +E
Sbjct: 115 NLLWR--ISLVKQAE-------QALVQELSQPDDLISFE-GYQLELNSRK--LRQG-EEL 161
Query: 208 SSCTKPDFEAESAHV-EDMPDLSRQ 231
TK +FE + V LSR+
Sbjct: 162 IKLTKAEFELLTVFVLHPQQVLSRE 186
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 142 (55.0 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
++VL+V+ +R + + L Y VT+V G +A + P D+++T+++LP +S
Sbjct: 7 IQVLVVDESAPSRAFIASTLENGGYIVTSVASGEEAVHEVNAAP--FDILVTDINLPGMS 64
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
G LL L+ + ++ V++++S S T K + GA D+++KPV
Sbjct: 65 GLNLLKLLKDS--FPDLEVVIVTSNASSFTAIKALRLGAYDFIIKPV 109
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 139 (54.0 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 41/170 (24%), Positives = 84/170 (49%)
Query: 37 VEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96
V A DS ++ + L R+ R P A + ID++LT+ +P ++G+ LL
Sbjct: 45 VTAVDSGKKAMELLGRRRGDRDHLTPSSPAA--AAAANDQAIDIVLTDYCMPEMTGYDLL 102
Query: 97 TLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR-RQS 155
+ IPV++MSS++ + +C+ GA D+++KP++ N+++ L + R
Sbjct: 103 KAIKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKPLKMNDVQRLRKCSGATRPK 162
Query: 156 SMVSGNETQDESVGQQKIEATS------ENDAASNHSSGYMACIQSKGEF 199
S V+G++ + + ++ A + + S+H +G +A + + F
Sbjct: 163 SAVAGDDDRCCNTAKKAAAAAAATPEQQQQQQRSSHLAG-LAMVMNASSF 211
>TIGR_CMR|BA_3261 [details] [associations]
symbol:BA_3261 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
ProteinModelPortal:Q81NE3 DNASU:1089115
EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
OMA:FELCKKM ProtClustDB:CLSK916983
BioCyc:BANT260799:GJAJ-3090-MONOMER
BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
Length = 225
Score = 137 (53.3 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 32/112 (28%), Positives = 61/112 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ +LL + D R+++ L+K ++V DG A EVL+ NI L + ++ +P +
Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLE--KENIHLAIVDIMMPFVD 61
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G+ L + ++ +IPVI+++++D + K + G DY+VKP E+
Sbjct: 62 GYTLCEEIRKYH---DIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEV 110
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 122 (48.0 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 31/124 (25%), Positives = 62/124 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVL-KGRPRNIDLILTEVDLPS 89
+++L+V+ + R+I+ LLR + T DG A +L KG + D ++T+ ++P
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKG---DFDFVVTDWNMPG 61
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ G LL + + K++PV+M++++ + G Y+VKP L+
Sbjct: 62 MQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDK 121
Query: 150 VWRR 153
++ R
Sbjct: 122 IFER 125
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/199 (24%), Positives = 93/199 (46%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+VE D Q + + L ++ + DG+ A + + D+I+ ++ LP +
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDA--LYRATAEEWDVIVLDLGLPKLD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L + + I N PV+++S++D+++ + + GA DYL KP E+ L +
Sbjct: 59 GLTVLKGIRDENI--NTPVVILSARDTLTQRVEGLNAGADDYLTKPF---EMVELIARI- 112
Query: 152 RRQSSMVSGNETQDESVGQQKIEA-TS----ENDAASNHSSGY--MACIQSKGEFIEKGS 204
R Q SGN + VG ++ TS + A S + Y +A E + +
Sbjct: 113 RAQLRRASGNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRT 172
Query: 205 DEQSSCTKPDFEAESAHVE 223
+ K DF+ +S +E
Sbjct: 173 ELVEHIYKQDFDRDSNTIE 191
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 136 (52.9 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 49/199 (24%), Positives = 93/199 (46%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+VE D Q + + L ++ + DG+ A + + D+I+ ++ LP +
Sbjct: 1 MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDA--LYRATAEEWDVIVLDLGLPKLD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L + + I N PV+++S++D+++ + + GA DYL KP E+ L +
Sbjct: 59 GLTVLKGIRDENI--NTPVVILSARDTLTQRVEGLNAGADDYLTKPF---EMVELIARI- 112
Query: 152 RRQSSMVSGNETQDESVGQQKIEA-TS----ENDAASNHSSGY--MACIQSKGEFIEKGS 204
R Q SGN + VG ++ TS + A S + Y +A E + +
Sbjct: 113 RAQLRRASGNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRT 172
Query: 205 DEQSSCTKPDFEAESAHVE 223
+ K DF+ +S +E
Sbjct: 173 ELVEHIYKQDFDRDSNTIE 191
>TIGR_CMR|CPS_1388 [details] [associations]
symbol:CPS_1388 "transcriptional regulatory protein PhoP"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 KO:K07660 RefSeq:YP_268131.1
ProteinModelPortal:Q485Y4 STRING:Q485Y4 GeneID:3519903
KEGG:cps:CPS_1388 PATRIC:21465991 OMA:KASTMIN
ProtClustDB:CLSK907750 BioCyc:CPSY167879:GI48-1469-MONOMER
Uniprot:Q485Y4
Length = 224
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 59/231 (25%), Positives = 105/231 (45%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+LLVE D + +Q + L +Y V DG A + +G + D+ + ++ LP I
Sbjct: 1 MRLLLVEDDQALQQELQKQLLLQNYSVDVASDGEIA--LFQGLEYDYDIAVIDLGLPKID 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G ++ + E +N P+++++++D + GA DYL KP EL + +
Sbjct: 59 GTTVVKALREKG--RNFPILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALI 116
Query: 152 RRQ----SSMVS-GNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDE 206
RR S+M++ G + D + Q +E S + +A + + GE I K +
Sbjct: 117 RRSAGKASTMINNGPYSLDIATSQVLVEQVSVSLSAHEFKV-FKYLMLHVGEVISKTTLT 175
Query: 207 QSSCTKPDFEAESAHVEDMPDLSRQLWGKSLQNDVKMQNHEARVNYGQKSL 257
+ + DF+ +S +E R+L K L D K E + G + L
Sbjct: 176 EHIYDQ-DFDLDSNVIEVF---IRRL-RKKLDPDSKYNFIETKRGQGYRLL 221
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 36/112 (32%), Positives = 61/112 (54%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+LL++ D +++ LL +++T DG + E+ + DLIL +V LP ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALAT--DYDLILLDVMLPKLNG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNEL 143
F +L + +H K PV+M++++ D + V + GA DYL KP EL
Sbjct: 61 FEVLRALRQH---KQTPVLMLTARGDEIDRVVGLEI-GADDYLPKPFNDREL 108
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/116 (25%), Positives = 66/116 (56%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDL 87
MA+ L+++ + R+ + L+++ T + DGL+ ++ L +DL+L ++++
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNN--KVDLVLCDLEM 58
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
P + GF L++ +++P+I+++S++ T + + +GA+DY+ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 29/116 (25%), Positives = 66/116 (56%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDL 87
MA+ L+++ + R+ + L+++ T + DGL+ ++ L +DL+L ++++
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNN--KVDLVLCDLEM 58
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
P + GF L++ +++P+I+++S++ T + + +GA+DY+ KP EL
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL 114
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 34/112 (30%), Positives = 63/112 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++LL++ +++ R+ +T LL+ + + V + G +A++ L R D+++T++ LP SG
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLT-RD-TFDIVITDLFLPDASG 63
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+L V E VI+++ S T K M GA DY+ KP+ +EL+
Sbjct: 64 IDILKKVKEDAPLTE--VILITGHASAETAVKAMKEGAFDYITKPLNFDELK 113
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 40/152 (26%), Positives = 76/152 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLK-AWEVLKGRPRNIDLILTEVDLPS 89
++VL+VE D + T L + + + + +K A EVL+ IDL+L ++ +P
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLE--ESRIDLVLLDIFMPE 59
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV---RRNELRNL 146
+GF LL + E K I ++M+S+ + ++ K + G DYL+KP R E +
Sbjct: 60 ETGFELLMYIRNQE--KEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALTI 117
Query: 147 WQH--VWRRQSSMVSGNETQDESVGQQKIEAT 176
++ + ++ +S +E + ++K E T
Sbjct: 118 YREKLTFMKEQQKISQSELDSLILQKEKREPT 149
>TIGR_CMR|GSU_1102 [details] [associations]
symbol:GSU_1102 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 KO:K07657 RefSeq:NP_952155.1
ProteinModelPortal:Q74E62 GeneID:2688572 KEGG:gsu:GSU1102
PATRIC:22024966 OMA:EARRCKP ProtClustDB:CLSK828177
BioCyc:GSUL243231:GH27-1089-MONOMER Uniprot:Q74E62
Length = 225
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 37/121 (30%), Positives = 62/121 (51%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L++E + +V L K YR DG E+ + +P DLIL ++ LP + G
Sbjct: 4 ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPP--DLILLDLMLPGMMGM 61
Query: 94 ALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ ++ + E +IPVIM++++ + + V + GA DY+VKP EL + V R
Sbjct: 62 EVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEV-GADDYVVKPFSTRELLLRVKAVLR 120
Query: 153 R 153
R
Sbjct: 121 R 121
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/114 (27%), Positives = 64/114 (56%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ ++L+ + ++ +I+ A L + ++V+ +G +A + K R N DLI+ ++ LP
Sbjct: 1 MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEA--LAKFREENPDLIILDLMLPE 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
ISG+ + + + +P+IM++++D ++ + GA DY+ KP EL
Sbjct: 59 ISGWDVCREIRKES---RVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKEL 109
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 33/113 (29%), Positives = 62/113 (54%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+V+ + + ++++A+L + V D KA +LK R ++D I+T++ +P G
Sbjct: 5 VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSR--DVDAIITDLRMPGRDGM 62
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
L V EH +IPVI +++ +V + + RGA Y +KP +L+++
Sbjct: 63 QLFEHVTEH--LPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSM 113
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + + ++ LL K Y VT +GL+A E+L+ + DL+L ++ +P + G
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHVFDLVLMDISMPIMDGI 514
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
A ++ + I IP+I +++ + S C+ G D ++KP+R ++
Sbjct: 515 AATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 143 (55.4 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + + ++ LL K Y VT +GL+A E+L+ + DL+L ++ +P + G
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLE-KNHVFDLVLMDISMPIMDGI 514
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
A ++ + I IP+I +++ + S C+ G D ++KP+R ++
Sbjct: 515 AATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 35/109 (32%), Positives = 56/109 (51%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP 88
M+ +VLLV+ R+IV+ L+K Y V +G A E L P DLI+ ++ +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP---DLIVLDIMMP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF +L + E E K IPVI+++++ + GA + KP
Sbjct: 58 VMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/123 (24%), Positives = 60/123 (48%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++VL+V+ + R+IV LLR + + DG A +L+G + D ++T+ ++P +
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQGG--DFDFVVTDWNMPGM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G LL + +IPV++++++ + G Y+VKP L+ +
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLDKI 122
Query: 151 WRR 153
+ R
Sbjct: 123 FER 125
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 42/153 (27%), Positives = 78/153 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LL++ D +++T L +++VT+ DG + K + DLIL +V +P ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASG--LAKAFDDSFDLILLDVMMPILNGF 68
Query: 94 ALL-TLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+L L H+ P++M++++ + + GA DYL KP + EL + + R
Sbjct: 69 EVLKALGGNHKT----PILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILR 124
Query: 153 R------QSSMVSGNETQDESVGQQKI-EATSE 178
R QS++ T+ ++ Q K+ +AT E
Sbjct: 125 RISIVKSQSTLAVNAPTKQLTINQVKVNQATRE 157
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +L+V+ + R+I+ +L Y T G +A +L R D+ILT++ +
Sbjct: 1 MPATILIVDDERGQREILQTILEGERYETTTAAGGQEALALLD--EREFDVILTDLKMQG 58
Query: 90 ISGFALLT--LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+SG LL L + + C +IMM++ +V + + M +GA DYL KP+ R+ L
Sbjct: 59 MSGMELLERLLAADPQQC----IIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTL 110
>TIGR_CMR|GSU_2506 [details] [associations]
symbol:GSU_2506 "sensory box protein/sigma-54 dependent
DNA-binding response regulator" species:243231 "Geobacter
sulfurreducens PCA" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00091 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_953552.1
ProteinModelPortal:Q74A84 SMR:Q74A84 GeneID:2687823
KEGG:gsu:GSU2506 PATRIC:22027859 OMA:MVVRDET ProtClustDB:CLSK703425
BioCyc:GSUL243231:GH27-2458-MONOMER Uniprot:Q74A84
Length = 564
Score = 142 (55.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA RVL+VE +D+ R L Y V D +A + K + DL+ T++ L +
Sbjct: 1 MARRVLIVEDEDTLRFTFEHFLAAEGYAVDTAADFAEA--IGKVESADYDLVFTDIILGN 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+G +L V E + +IPV+M++ +V T + GA DYL KPV+R+ L
Sbjct: 59 DNGIDVLREVKERQ--PSIPVVMITGYPNVETASDAVRLGAFDYLPKPVKRDAL 110
>TIGR_CMR|GSU_0879 [details] [associations]
symbol:GSU_0879 "chemotaxis protein CheV" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
RefSeq:NP_951936.1 ProteinModelPortal:Q74ET0 DNASU:2687281
GeneID:2687281 KEGG:gsu:GSU0879 PATRIC:22024521
HOGENOM:HOG000255028 ProtClustDB:CLSK828077
BioCyc:GSUL243231:GH27-857-MONOMER Uniprot:Q74ET0
Length = 312
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 40/124 (32%), Positives = 64/124 (51%)
Query: 27 LQRMALRVLLVEADDST--RQIVTALLRKSSYRVTAVPDGLKAWEVLKG---RPR----- 76
L R R+L+ ADDS R + + LR + Y V +G AW +++ R R
Sbjct: 177 LDRSQRRILV--ADDSAFIRNSICSSLRGAGYNVDEAENGEDAWNMIQDKLTRCRAAGVN 234
Query: 77 ---NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133
+DL++T+V++P + G L TLV + ++ K++PV++ SS S K GA D
Sbjct: 235 LRSELDLLITDVEMPKMDGLHLTTLVKKDDVLKDLPVLIFSSLASDDNKRKWKDLGALDI 294
Query: 134 LVKP 137
+ KP
Sbjct: 295 VTKP 298
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 133 (51.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M R+L+VE + + R+++T ++ + + +A D A +LK P DLIL + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLK-EPYP-DLILLDWMFPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG L + + E + IP+IM++++ K + GA DY+ KP EL +
Sbjct: 59 GSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKA 118
Query: 150 VWRRQSSMVSGNETQD 165
V RR S+ ET D
Sbjct: 119 VLRR-SAPTRLEETID 133
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 117 (46.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKA-WEVLKGRPRNID--LILTEVDLPS 89
+LLVE + + LR+ + V DG +A ++ + P +D L+L ++ LP
Sbjct: 6 ILLVEDNPDDEFLALRALRRHGLQDVVVARDGEQAVGQLFEAAPP-LDPWLVLLDLKLPK 64
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
++G +L + E ++ PVI++SS + V KC G YL KP+
Sbjct: 65 MNGLEVLRTIRSEERTRHTPVIVISSSQEETDVVKCRELGVLAYLTKPI 113
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 117 (46.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/113 (23%), Positives = 63/113 (55%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
VL+V+ + R+I++ LR++ V + DG++ VL G+ ++DLIL+++++P++
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGK--SVDLILSDINMPNM 61
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G + + P++M++++ + + + GA+D + KP ++L
Sbjct: 62 DGLEFIKQARANG--HKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 133 (51.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 40/125 (32%), Positives = 66/125 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ VL+VE D TR ++ + Y+VT G + E L+ +IDL+L +++LP
Sbjct: 1 MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELR-NLW 147
G LLT + + I +I+++ + DS+ + M GA DY+ KPV EL+ +
Sbjct: 59 EDGL-LLTRELRSQ--SEIGIILVTGRTDSIDKIVGLEM-GADDYVTKPVDLRELQVRVK 114
Query: 148 QHVWR 152
+WR
Sbjct: 115 NLLWR 119
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 133 (51.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 40/125 (32%), Positives = 66/125 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ VL+VE D TR ++ + Y+VT G + E L+ +IDL+L +++LP
Sbjct: 1 MSYHVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELR-NLW 147
G LLT + + I +I+++ + DS+ + M GA DY+ KPV EL+ +
Sbjct: 59 EDGL-LLTRELRSQ--SEIGIILVTGRTDSIDKIVGLEM-GADDYVTKPVDLRELQVRVK 114
Query: 148 QHVWR 152
+WR
Sbjct: 115 NLLWR 119
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 31/113 (27%), Positives = 62/113 (54%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+VE D RQ+ LL++ Y V V G + + L+ + L++T++ +P +SG
Sbjct: 3 RILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRLE--KQEYHLVITDLVMPGMSG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+L+ V + N+ VI+++ ++ + + GA DY++KP +E ++
Sbjct: 61 IEVLSRVKQK--APNVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFKH 111
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 116 (45.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 31/126 (24%), Positives = 65/126 (51%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKG-RPRNIDLILTEVDL 87
M+ RVL+V+ R ++ +L K+ Y V +G +A E+ K +P D++ ++ +
Sbjct: 1 MSARVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP---DVVTMDITM 57
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147
P + G + + + I N +IM S+ + V + + GA D++VKP +++ + +
Sbjct: 58 PEMDGIQAVREIKK--IDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAF 115
Query: 148 QHVWRR 153
+ +R
Sbjct: 116 EKTLKR 121
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 116 (45.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 33/121 (27%), Positives = 62/121 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRK--SSYRVTAVPDGLKAWEVLKGRPRNID--LILTEVDL 87
+ +LLVE + + +L+K + R+ V DG++A L + +L ++ L
Sbjct: 7 ITMLLVEDNPDEEFLTRRVLKKFPALSRIDVVKDGVEALRYLTVAENRVPPRFVLLDLKL 66
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV---RRNELR 144
P + G +L + + E ++IPV++++S D + C GAA +L KP+ R +E+
Sbjct: 67 PRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAHFLQKPLDAGRMSEVL 126
Query: 145 N 145
N
Sbjct: 127 N 127
>DICTYBASE|DDB_G0274101 [details] [associations]
symbol:dokA "histidine kinase DokA" species:44689
"Dictyostelium discoideum" [GO:0006928 "cellular component
movement" evidence=IGI] [GO:0016021 "integral to membrane"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=IEA;ISS;IDA] [GO:0030435 "sporulation resulting in
formation of a cellular spore" evidence=IMP] [GO:0023014 "signal
transduction by phosphorylation" evidence=IEA;ISS] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IMP]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IEA;ISS] [GO:0009927 "histidine
phosphotransfer kinase activity" evidence=ISS] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS00086 PROSITE:PS50110 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0274101 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0030435
EMBL:AAFI02000012 GO:GO:0005622 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0009927
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 HSSP:Q9WZV7
EMBL:X96869 PIR:S71628 RefSeq:XP_644179.1 ProteinModelPortal:Q869S5
EnsemblProtists:DDB0185194 GeneID:8619608 KEGG:ddi:DDB_G0274101
OMA:FANERLT GO:GO:0007234 Uniprot:Q869S5
Length = 1671
Score = 145 (56.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 45/153 (29%), Positives = 74/153 (48%)
Query: 14 MNGNEGIAKWETFLQRMALR--VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL 71
++G + T +Q+ + +L+ E +D ++V L K Y +GLKA E++
Sbjct: 1498 VDGGNNVPSTLTTIQQSQPKKYILVAEDNDINIKVVVRQLEKLGYTAIVGINGLKALEII 1557
Query: 72 KGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC-KNIPVIMMSSQDSVSTVYKCMMRGA 130
P I LIL + +P + GF T++ + E + IP+I M++ DS +C G
Sbjct: 1558 GSFP--ICLILLDCQMPQMDGFTCSTILRQIEPTGQRIPIIAMTANDSKD---RCFEVGM 1612
Query: 131 ADYLVKPVRRNELRNLWQHVWRRQSSMVSGNET 163
DYL KPVR + L+ W + +GN T
Sbjct: 1613 DDYLSKPVRVDRLQKTLSD-WIKTDE--NGNPT 1642
>UNIPROTKB|Q1D948 [details] [associations]
symbol:MXAN_2606 "Sensor histidine kinase/response
regulator" species:246197 "Myxococcus xanthus DK 1622" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0023014
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 RefSeq:YP_630825.1
ProteinModelPortal:Q1D948 IntAct:Q1D948 STRING:Q1D948
GeneID:4101819 KEGG:mxa:MXAN_2606 PATRIC:22647741 OMA:EMEIEIY
ProtClustDB:CLSK955309 BioCyc:MXAN246197:GIWU-2583-MONOMER
Uniprot:Q1D948
Length = 970
Score = 142 (55.0 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 39/112 (34%), Positives = 62/112 (55%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSIS 91
R+++VE D R + LL + YRV +G + L+ RP DLIL++V +P +S
Sbjct: 599 RIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRERP---DLILSDVMMPVMS 654
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +LT + +IPVI+++++ V+ + + GA DYL KP NEL
Sbjct: 655 GLQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNEL 706
>ASPGD|ASPL0000074067 [details] [associations]
symbol:nikA species:162425 "Emericella nidulans"
[GO:0007234 "osmosensory signaling via phosphorelay pathway"
evidence=ISS] [GO:0071474 "cellular hyperosmotic response"
evidence=IMP] [GO:0071470 "cellular response to osmotic stress"
evidence=IMP] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEA]
[GO:0071473 "cellular response to cation stress" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 EMBL:BN001303
ProteinModelPortal:C8V8F5 EnsemblFungi:CADANIAT00005966 OMA:IGMTQLT
Uniprot:C8V8F5
Length = 1297
Score = 143 (55.4 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 32/113 (28%), Positives = 63/113 (55%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LL E +D +++ +L K ++ V+ V +GL+A E +K R D+IL +V +P + GF
Sbjct: 1109 ILLAEDNDVNQKLAVKILEKHNHNVSVVGNGLEAVEAVK--QRRYDVILMDVQMPVMGGF 1166
Query: 94 ALLTLVMEHEICKNI---PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ E+E + P+I +++ + KC+ +YL KP+++N++
Sbjct: 1167 EATGKIREYERDSGLSRTPIIALTAHAMLGDREKCIQAQMDEYLSKPLKQNQM 1219
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 131 (51.2 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+LLVE D +T + + +L ++ V A G + ++ K + DLIL +++LP ++
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAK--LYDYDLILLDINLPDMN 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +L + I P++++S D + K GA DYL KP R EL
Sbjct: 59 GHEVLRQLRMSRI--ETPILILSGVDDTESKIKGFGFGADDYLTKPFHREEL 108
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 130 (50.8 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 40/133 (30%), Positives = 69/133 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSIS 91
RVL+V+ D + LR S + V DG +A + RP D I+ ++++P +
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP---DAIVLDINMPVLD 65
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +++T + + ++PV ++S++ SV + GA DYLVKP EL + +
Sbjct: 66 GVSVVTALRAMD--NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALL 123
Query: 152 RRQ-SSMVSGNET 163
RR+ S+ S +ET
Sbjct: 124 RRRGSTATSSSET 136
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 136 (52.9 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 37/111 (33%), Positives = 60/111 (54%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+V+ D S I+ ALLR Y V G +A E + R + DL+L +V + + G
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV--REQVFDLVLCDVRMAEMDGI 65
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
A L + + IPV++M++ SV T + + GA DYL+KP+ + L+
Sbjct: 66 ATLKEIKA--LNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>TIGR_CMR|SPO_1624 [details] [associations]
symbol:SPO_1624 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_166865.1 ProteinModelPortal:Q5LSZ0 GeneID:3193367
KEGG:sil:SPO1624 PATRIC:23376571 OMA:FAVECAG Uniprot:Q5LSZ0
Length = 226
Score = 129 (50.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 36/114 (31%), Positives = 55/114 (48%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ RVL+VE D TR+ + + + V DG + + D ++ + LP
Sbjct: 1 MSRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREG--LYHATDGGFDAMVLDRMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G AL+ V + N PVIM+++ +V K + GA DYLVKP EL
Sbjct: 59 LDGLALIKSVRAAGL--NTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQEL 110
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 113 (44.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK-GRPRNIDLILTEVDLP 88
M+ RVLL+E + + + + LL + ++V DG A +++ P DL++ +V LP
Sbjct: 1 MSRRVLLIEDEPNIAEAIRFLLSRDGWQVETHADGADAVDIITTALP---DLVILDVMLP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
SG +L + E +++PV+M++++ G + ++ KP E+
Sbjct: 58 GKSGMDILRELREQAATQDLPVLMLTARGQSRDRDMAEKAGVSRFMTKPFSNTEV 112
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 129 (50.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/118 (26%), Positives = 63/118 (53%)
Query: 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEV 85
+ M R+L+V+ D S +++T +LR + + DG +A ++ RP DL+L ++
Sbjct: 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP---DLVLLDL 57
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
LP ++G + ++ +P++M++++ V + GA DY++KP + EL
Sbjct: 58 MLPGMNGIDVCRVLRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKEL 112
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 129 (50.5 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 36/128 (28%), Positives = 66/128 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKS--SYRVTAVPDGLKAWEVLK-GRPRNIDLILTEVDLP 88
+++L++E D T +IV + R+ G +++ +P D I+ ++ LP
Sbjct: 1 MKILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKP---DAIILDIGLP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148
ISG+ +L + + +PVI+++ ++ S + K + GA DYLVKP R+ EL +
Sbjct: 58 DISGYEVLRQI---RLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMELLARIK 114
Query: 149 HVWRRQSS 156
+ RR S
Sbjct: 115 AISRRLHS 122
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 135 (52.6 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 30/114 (26%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+VE D R+ + L + Y G A LK + ++D+++++V + +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+LL + H N+PV++M++ ++ + M GA +Y+ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 135 (52.6 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 30/114 (26%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+VE D R+ + L + Y G A LK + ++D+++++V + +SG
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+LL + H N+PV++M++ ++ + M GA +Y+ KP L N+
Sbjct: 63 LSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNM 114
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 112 (44.5 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/114 (25%), Positives = 60/114 (52%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSIS 91
++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P +
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 61
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 62 GIEILKRMKV--IDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ R+L+VE + R+++ +L + Y+ D A L P DL+L + LP
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG L+ + E+ +NIPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 150 VWRR 153
V RR
Sbjct: 119 VIRR 122
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/124 (29%), Positives = 62/124 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ R+L+VE + R+++ +L + Y+ D A L P DL+L + LP
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKL-AEPFP-DLVLLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG L+ + E+ +NIPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKA 118
Query: 150 VWRR 153
V RR
Sbjct: 119 VIRR 122
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 35/146 (23%), Positives = 69/146 (47%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+V+ + R ++T L+ Y+V DG + +L+ + L++ ++ +P + G
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLE--ENEVHLVVLDIMMPKVDGI 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
+ + E K +P+IM+S++ + GA DY+ KP EL + RR
Sbjct: 64 HMCMKIREE---KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
Query: 154 QSSMVS-GNETQDE-SVGQQKIEATS 177
M + +DE +G+ KI ++
Sbjct: 121 YMKMNGFAIQNEDELEIGEMKINIST 146
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 142 (55.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 33/114 (28%), Positives = 61/114 (53%)
Query: 40 DDSTRQIVTA--LLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97
DD R I L+K + +GL+ E+LK NIDLIL ++ +P++ G+ +
Sbjct: 782 DDDHRNIFALQNALKKQHANIITAQNGLECLEILKNNT-NIDLILMDIMMPNMDGYETME 840
Query: 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
+ + IP+I ++++ + KC+ GA+DY+ KP+ ++L ++ VW
Sbjct: 841 HIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSVMS-VW 893
Score = 43 (20.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 9 EELKEMNGNEGIAKW 23
E+LKE+NGN I W
Sbjct: 111 EKLKEINGN--ITNW 123
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 139 (54.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 36/106 (33%), Positives = 59/106 (55%)
Query: 32 LRVLLVEADDS-TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+R+L +E + + R + +LLRK Y+V V DG VL+G + DLIL + D+P
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKG-YQVDVVADGAAGLTVLEGT--SYDLILADYDMPVC 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136
G ++ + + +IPVIM++ S + + +GAADY+VK
Sbjct: 64 GGIEVIATLAARGV--DIPVIMVTGNGSEKVAVEALKQGAADYVVK 107
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 317 FNNHKPPSNNGASRFDSSPQLDLSLRRTHPD 347
F H P A+R +LD+SLR+ D
Sbjct: 268 FLAHHDPLTGLANRVLFFDRLDVSLRQAERD 298
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 43/159 (27%), Positives = 79/159 (49%)
Query: 36 LVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95
+VE S + + L + V G A E + GR R DLIL ++ LP ++G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI-GR-REPDLILLDLRLPDMTGMDV 58
Query: 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155
L V E ++P++ M++ S+ T + M GA D+L+KP + LR + R+ S
Sbjct: 59 LYAVKEKS--PDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKAS 116
Query: 156 SMVSGNETQDES----VGQ-QKIEATSE--NDAASNHSS 187
+ + + ++++ +G Q ++A + AAS+ +S
Sbjct: 117 KLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKAS 155
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 43/159 (27%), Positives = 79/159 (49%)
Query: 36 LVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95
+VE S + + L + V G A E + GR R DLIL ++ LP ++G +
Sbjct: 1 MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI-GR-REPDLILLDLRLPDMTGMDV 58
Query: 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155
L V E ++P++ M++ S+ T + M GA D+L+KP + LR + R+ S
Sbjct: 59 LYAVKEKS--PDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKAS 116
Query: 156 SMVSGNETQDES----VGQ-QKIEATSE--NDAASNHSS 187
+ + + ++++ +G Q ++A + AAS+ +S
Sbjct: 117 KLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKAS 155
>TIGR_CMR|CPS_1828 [details] [associations]
symbol:CPS_1828 "DNA-binding response regulator TorR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07772 ProtClustDB:PRK10766
RefSeq:YP_268558.1 ProteinModelPortal:Q484F7 SMR:Q484F7
STRING:Q484F7 GeneID:3519027 KEGG:cps:CPS_1828 PATRIC:21466805
OMA:NILWRIS BioCyc:CPSY167879:GI48-1898-MONOMER Uniprot:Q484F7
Length = 240
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/141 (25%), Positives = 72/141 (51%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + TR + + + YRV+ + + VL+ +IDL++ +++LP G
Sbjct: 6 ILVVEDEAITRAKLVGYFQHAGYRVSEAENKSQMMVVLENH--HIDLVMLDINLPDEDGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNEL----RN-LW 147
+ + H NI +++++ + DS+ + M GA DY+ KP EL +N LW
Sbjct: 64 MITRNLRSHS---NIGIVLVTGRTDSIDKIIGLEM-GADDYVTKPFELRELLVRVKNILW 119
Query: 148 QHVWRRQSSMVSGNETQDESV 168
+ Q S+++ + +D+ +
Sbjct: 120 RISLTEQKSVIATEDEEDDDL 140
>UNIPROTKB|Q9KQ67 [details] [associations]
symbol:VC_2135 "Sigma-54 dependent response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+VE D+ R+ + L + Y A +LK + ++D+++++V + + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDA--LLKLKSHSVDIVVSDVQMAGMGG 64
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
ALL + +H N+PV++M++ ++ M GA DY+ KP L N+
Sbjct: 65 LALLRSIKQH--WPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>TIGR_CMR|VC_2135 [details] [associations]
symbol:VC_2135 "flagellar regulatory protein C" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0001539 "ciliary or
flagellar motility" evidence=ISS] [GO:0030092 "regulation of
flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789
OMA:NWPNLPV PIR:G82114 RefSeq:NP_231766.1 ProteinModelPortal:Q9KQ67
DNASU:2613391 GeneID:2613391 KEGG:vch:VC2135 PATRIC:20083297
Uniprot:Q9KQ67
Length = 479
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+VE D+ R+ + L + Y A +LK + ++D+++++V + + G
Sbjct: 7 KVLIVEDDEGLREALIDTLALAGYEWLEADCAEDA--LLKLKSHSVDIVVSDVQMAGMGG 64
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
ALL + +H N+PV++M++ ++ M GA DY+ KP L N+
Sbjct: 65 LALLRSIKQH--WPNLPVLLMTAYANIQDAVSAMKDGAIDYMAKPFAPEVLLNM 116
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 26/107 (24%), Positives = 58/107 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++VL+V+ ++R ++ L++ ++ +TA DG + +++ P + L++++ ++P +
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL V + K I++++Q + V K GA + L KP
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKP 111
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/114 (21%), Positives = 63/114 (55%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++VL+V+ ++R +++ L + ++ +T+ DG + ++++ +P + L++++ ++P +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G L V + K I++++Q + V K GA + L KP +++R
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 111 (44.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/114 (21%), Positives = 63/114 (55%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++VL+V+ ++R +++ L + ++ +T+ DG + ++++ +P + L++++ ++P +
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G L V + K I++++Q + V K GA + L KP +++R
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 127 (49.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 38/152 (25%), Positives = 79/152 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+ +L+VE +D+ ++++LR S + ++T G +A E + DL+L ++ LP
Sbjct: 1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVESVNSD--KADLVLLDLGLPD 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQ 148
++G +L + H I P+I++++ + V K + +GA +Y+ KP R E L + +
Sbjct: 59 MNGLKVLDEI--HPIT-GAPIIVVTACEDEENVLKALEQGADEYITKPFRHLEFLARVKK 115
Query: 149 HVWRRQSSMVSGNETQDESVGQQKIEATSEND 180
+ + S + ++ D ++ K E + ND
Sbjct: 116 ALSKNISQNTAIIKSGDITIDCAKHELSFRND 147
>TIGR_CMR|SO_4647 [details] [associations]
symbol:SO_4647 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
Length = 231
Score = 127 (49.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 39/159 (24%), Positives = 73/159 (45%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+LLVE D + + + L + Y + DG + + + N D + +V LP +
Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEG--LFQAVEYNYDAAIIDVGLPKLD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L+ + + E + P+++++++DS + + GA DYL KP EL + +
Sbjct: 59 GISLIRRIRQKE--RAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALI 116
Query: 152 RRQSSMVSGNETQDE-SVGQQKIEATSENDAASNHSSGY 189
RR + S T S+ +E E + + S Y
Sbjct: 117 RRSAGKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEY 155
>TIGR_CMR|GSU_2313 [details] [associations]
symbol:GSU_2313 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 GO:GO:0006355 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P08402 HOGENOM:HOG000167205 RefSeq:NP_953362.1
ProteinModelPortal:Q74AN9 GeneID:2687341 KEGG:gsu:GSU2313
PATRIC:22027481 OMA:ARYRYLC ProtClustDB:CLSK763191
BioCyc:GSUL243231:GH27-2319-MONOMER Uniprot:Q74AN9
Length = 301
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 37/141 (26%), Positives = 73/141 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+L+ + D ++R ++T L+++ Y V DG +AWE L+ +L V +P +
Sbjct: 1 MRILIADDDVTSRTMLTGLMKRWGYDVVEAIDGAQAWEELQKSDAPKLAVLDWV-MPVMD 59
Query: 92 GFALLTLVMEHEICKNIP-VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G ++ V +++P ++++++++ V + + GA DY+ KP ELR Q V
Sbjct: 60 GVEVIRQVRARS-AEHLPYILLLTAKNGTDDVIRGLDAGADDYVGKPFSLGELRARIQ-V 117
Query: 151 WRRQSSMVSGNETQDESVGQQ 171
RR + S + E++ Q
Sbjct: 118 GRRTVELHSRLQETQEALNHQ 138
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 36/115 (31%), Positives = 67/115 (58%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
A ++L V+ D+ + ++ LL + + +TAV G +A +L+ ++DL+++++ +
Sbjct: 3 APKILAVDDDELSLLMLENLLADAGFAPLTAV-SGAQALALLERE--HVDLLISDLIMEG 59
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
++G LL V E N+PVI+++++ SV + + M RGA DYL KP LR
Sbjct: 60 MNGLELLDRVRERY--PNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLR 112
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 33/111 (29%), Positives = 59/111 (53%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ + R + L+K Y V + +G A ++ R DL+L ++ LP ISG
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIV--REEQPDLVLLDIQLPGISG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
L + E++ + I VIM+++ ++ T M GA DY+ KP +E+
Sbjct: 63 LEALEKIKEYD--EEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEM 111
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +VL+VE ++ ++ LL Y +GL A + R DLIL ++ LP
Sbjct: 1 MTKKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI--ARENKPDLILMDIQLPE 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
ISG + + E + +IPV+ +++ + G Y+ KP+
Sbjct: 59 ISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 107
>UNIPROTKB|Q747K4 [details] [associations]
symbol:GSU3261 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_954302.1
ProteinModelPortal:Q747K4 GeneID:2686384 KEGG:gsu:GSU3261
PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGR----PRNID----LILT 83
+LLVE + + L K + VT V DG++A + L G R++ L+L
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLSIMPKLVLL 65
Query: 84 EVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
++ LP + G +L + + + +PV++ +S + + +C GA Y+ KPV N+L
Sbjct: 66 DLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKPVDFNQL 125
>TIGR_CMR|GSU_3261 [details] [associations]
symbol:GSU_3261 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957
RefSeq:NP_954302.1 ProteinModelPortal:Q747K4 GeneID:2686384
KEGG:gsu:GSU3261 PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGR----PRNID----LILT 83
+LLVE + + L K + VT V DG++A + L G R++ L+L
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLSIMPKLVLL 65
Query: 84 EVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
++ LP + G +L + + + +PV++ +S + + +C GA Y+ KPV N+L
Sbjct: 66 DLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKPVDFNQL 125
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 109 (43.4 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/112 (24%), Positives = 59/112 (52%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ R ++ + +K Y+ +G +A +++K N DL++ ++ +P + G
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+L V E I ++I VI+M++ + + + GA + KP +E+R
Sbjct: 62 IEILKHVKE--IDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/114 (28%), Positives = 63/114 (55%)
Query: 32 LRVLLVEADDSTRQIVTALLRKS--SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+++LL+E D +++ + + S + RV + G K E ++ N D+IL ++ LP
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVISASSGRKGIESVESV--NPDIILLDLGLPD 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
++GF +L + ++P+I+++ + S V + + GA DY+ KP R+ EL
Sbjct: 59 MNGFDVLKQIRNFS---DVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMEL 109
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 137 (53.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 29/105 (27%), Positives = 59/105 (56%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+ + ++S R +++ LRK + V DG +A +++ DL + ++ +P +G
Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSN--EYDLAILDIKMPGFTG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
LL V E+ ++ +++M+++ S+ + M RGA DY+ KP
Sbjct: 63 LELLDKV--RELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKP 105
Score = 38 (18.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 447 VPVSVK-VNSTNQAMHKLDHKLDSLEDL 473
+ V V+ V +TNQ + +L K EDL
Sbjct: 275 IAVDVRIVAATNQNLEELVRKKQFREDL 302
>UNIPROTKB|P0ACZ8 [details] [associations]
symbol:cusR "CusR-Pasp DNA binding transcriptional
activator" species:83333 "Escherichia coli K-12" [GO:0001114
"protein-DNA-RNA complex" evidence=IDA] [GO:0001046 "core promoter
sequence-specific DNA binding" evidence=IDA] [GO:0046688 "response
to copper ion" evidence=IDA;IMP] [GO:0010628 "positive regulation
of gene expression" evidence=IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS;IDA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0032993 "protein-DNA complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0046688 GO:GO:0010628
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160
EMBL:U82598 eggNOG:COG0745 GO:GO:0001046 GO:GO:0032993
EMBL:AF245661 EMBL:U82579 PIR:A64790 RefSeq:NP_415103.1
RefSeq:YP_488858.1 ProteinModelPortal:P0ACZ8 SMR:P0ACZ8
IntAct:P0ACZ8 EnsemblBacteria:EBESCT00000001137
EnsemblBacteria:EBESCT00000017813 GeneID:12930897 GeneID:945003
KEGG:ecj:Y75_p0558 KEGG:eco:b0571 PATRIC:32116310 EchoBASE:EB3612
EcoGene:EG13851 HOGENOM:HOG000034815 KO:K07665 OMA:AMTEPYD
ProtClustDB:PRK09836 BioCyc:EcoCyc:G6319-MONOMER
BioCyc:ECOL316407:JW0560-MONOMER Genevestigator:P0ACZ8
GO:GO:0001114 TIGRFAMs:TIGR01387 Uniprot:P0ACZ8
Length = 227
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 31/133 (23%), Positives = 73/133 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+VE + T + +T L ++ + V +GL + + + DLI+ ++ LP ++
Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHL--AMTGDYDLIILDIMLPDVN 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G+ ++ ++ K +P++++++ ++ K + GA DYLVKP EL + +
Sbjct: 59 GWDIVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116
Query: 152 RRQSSMVSGNETQ 164
RR ++++ ++ Q
Sbjct: 117 RRGAAVIIESQFQ 129
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 45/157 (28%), Positives = 76/157 (48%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDL 87
M +R+L+VE + R +V+ +L ++ Y+ DG + ++ + P DLIL + L
Sbjct: 1 MTIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALS-QLCEPYP---DLILLDWML 56
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147
P SG L+ + + IPV+M++++ + + GA DY+ KP EL
Sbjct: 57 PGGSGIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARI 116
Query: 148 QHVWRRQSSMVSGNET---QDESVGQQKIEATSENDA 181
+ V RR S M ET Q S+ T+++DA
Sbjct: 117 KAVMRRISPMAL-EETINLQGLSLDPVSHRVTAQDDA 152
>TIGR_CMR|APH_0196 [details] [associations]
symbol:APH_0196 "nitrogen assimilation regulatory protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K13599
ProtClustDB:CLSK749342 RefSeq:YP_504819.1 ProteinModelPortal:Q2GLD2
STRING:Q2GLD2 GeneID:3930623 KEGG:aph:APH_0196 PATRIC:20948964
OMA:MHARILI BioCyc:APHA212042:GHPM-230-MONOMER Uniprot:Q2GLD2
Length = 462
Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/113 (30%), Positives = 59/113 (52%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--IS 91
VL+V+ + R ++ +LR +Y DGL A ++ R D++L ++ L I
Sbjct: 12 VLIVDDEADLRAMIQDILRDDNYVTRVAADGLSAMKL--AYEREPDVVLLDIWLKGSDID 69
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G ++L + E ++PVIM+S +++T K + GA DY+ KP N L+
Sbjct: 70 GLSVLEKLKERY--PSLPVIMISGHGNIATAVKSLHIGAYDYIEKPFTENRLK 120
>TIGR_CMR|SO_3988 [details] [associations]
symbol:SO_3988 "aerobic respiration control protein ArcA"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07773
OMA:QRTMQEN ProtClustDB:PRK11173 SUPFAM:SSF46894 HSSP:P08402
RefSeq:NP_719518.1 ProteinModelPortal:Q8EAB9 SMR:Q8EAB9
GeneID:1171620 KEGG:son:SO_3988 PATRIC:23527652 Uniprot:Q8EAB9
Length = 238
Score = 124 (48.7 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 36/134 (26%), Positives = 68/134 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + TR + ++ Y VT DG + + ++ I+L++ +++LP +G
Sbjct: 6 ILIVEDEAVTRNTLRSIFEAEGYVVTEANDGAEMHKAMQ--ENKINLVVMDINLPGKNG- 62
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
L L E NI +I ++ +D+ + GA DY+ KP EL +++ R
Sbjct: 63 --LLLARELREINNIGLIFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLTR 120
Query: 154 QSSMVSGNETQDES 167
+S +GNE +++S
Sbjct: 121 VNS--AGNEVEEKS 132
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 31/104 (29%), Positives = 52/104 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VLLVE + R+IV+ R + V DG KA E+ IDLI+ ++ LP I G+
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFA--EHEIDLIMLDIMLPEIDGW 62
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
++ + + +P+IM++++ GA +Y+ KP
Sbjct: 63 SVCRRIRKESA---VPIIMLTARSDEDDTLLGFELGADEYVTKP 103
>DICTYBASE|DDB_G0291424 [details] [associations]
symbol:DDB_G0291424 "Transcription factor SKN7"
species:44689 "Dictyostelium discoideum" [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
dictyBase:DDB_G0291424 EMBL:AAFI02000177 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_635201.1
ProteinModelPortal:Q54EN9 EnsemblProtists:DDB0183884 GeneID:8628146
KEGG:ddi:DDB_G0291424 InParanoid:Q54EN9 OMA:MCANITD
ProtClustDB:CLSZ2429563 Uniprot:Q54EN9
Length = 902
Score = 133 (51.9 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 34/157 (21%), Positives = 76/157 (48%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VLLVE + ++++ ++ + ++ V +G A ++ K PR +L+L ++ +P + G
Sbjct: 711 VLLVEDNPLQIKVISKVMERYNFDVEVASNGQMALDMFKANPR-YELVLMDMIMPIMDGL 769
Query: 94 ALLTLVMEHEI---CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
L+ E+E K PVI+ ++ S C+ G D++ KP+ + + W+ +
Sbjct: 770 TATMLIREYERERGLKRTPVIIQTADSRESHKLICLAAGCDDFMTKPLDKRFVDRAWKLL 829
Query: 151 WRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSS 187
S + N + + + + N++ +N++S
Sbjct: 830 NEEFDSTDNNNNNNNNNNNNNN--SNNNNNSNNNNNS 864
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 134 (52.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 33/142 (23%), Positives = 72/142 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R++L++ ++ +++ A+L S Y V +A E K + DL+++++ +P + G
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAG--DWDLVVSDIKMPGMDG 63
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+L + + +PVIM+++ +V T + + RGA D + KP EL ++ +
Sbjct: 64 LEVLQRIKAKDPL--VPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALK 121
Query: 153 RQSSMVSGNETQDESVGQQKIE 174
+ E ++E VG+ + +
Sbjct: 122 HTQLLEENRELREELVGKFRFD 143
Score = 38 (18.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 272 KEANTRAHFDEDTELETHRSDVILTSEVCNVPVNSPRQVIDFM 314
K A T A + LE + E N+P+N + ++ F+
Sbjct: 219 KGAFTGAKENRQGLLEAADGGTLFLDEAGNLPMNVQKTLLRFL 261
>SGD|S000001249 [details] [associations]
symbol:SKN7 "Nuclear response regulator and transcription
factor" species:4932 "Saccharomyces cerevisiae" [GO:0043565
"sequence-specific DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IDA;IMP] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043619 "regulation of transcription from RNA polymerase II
promoter in response to oxidative stress" evidence=IMP] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA;IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IMP;IDA;IPI] [GO:0008361 "regulation of cell
size" evidence=IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000304 "response to singlet oxygen"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=TAS] InterPro:IPR000232 InterPro:IPR001789
InterPro:IPR014402 Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595
PRINTS:PR00056 PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415
SMART:SM00448 SGD:S000001249 GO:GO:0005634 EMBL:BK006934
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0008361 GO:GO:0006970 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000304
GO:GO:0043619 EMBL:U00029 RefSeq:NP_012078.3 GeneID:856615
KEGG:sce:YHR208W KO:K00826 GeneTree:ENSGT00610000087034
RefSeq:NP_012076.3 GeneID:856613 KEGG:sce:YHR206W KO:K15859
OMA:QHGMNDI OrthoDB:EOG4TMV98 EMBL:U00485 EMBL:X83031 EMBL:AY723828
PIR:A49344 ProteinModelPortal:P38889 SMR:P38889 DIP:DIP-2403N
IntAct:P38889 STRING:P38889 PaxDb:P38889 PeptideAtlas:P38889
EnsemblFungi:YHR206W CYGD:YHR206w HOGENOM:HOG000248776
NextBio:982535 Genevestigator:P38889 GermOnline:YHR206W
Uniprot:P38889
Length = 622
Score = 130 (50.8 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 41/143 (28%), Positives = 65/143 (45%)
Query: 4 VVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD 63
V L L + N A+ T R VLLVE D + Q+ + LRK V V D
Sbjct: 349 VSLQLPNLPDQNSLTPNAQNNTVTLRKGFHVLLVEDDAVSIQLCSKFLRKYGCTVQVVSD 408
Query: 64 GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123
GL A L+ + R DL+L ++ +P++ G ++V + P+I M+ +
Sbjct: 409 GLSAISTLE-KYR-YDLVLMDIVMPNLDGATATSIVRSFD--NETPIIAMTGNIMNQDLI 464
Query: 124 KCMMRGAADYLVKPVRRNELRNL 146
+ G D L KP R++L ++
Sbjct: 465 TYLQHGMNDILAKPFTRDDLHSI 487
>UNIPROTKB|P0AFJ5 [details] [associations]
symbol:phoB "PhoB transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0001108
"bacterial-type RNA polymerase holo enzyme binding" evidence=IMP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006817 "phosphate ion transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U73857
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
eggNOG:COG0745 HOGENOM:HOG000034819 GO:GO:0001108 EMBL:X04026
PIR:A24256 RefSeq:NP_414933.1 RefSeq:YP_488691.1 PDB:1B00 PDB:1GXP
PDB:1GXQ PDB:1QQI PDB:1ZES PDB:2IYN PDB:2JB9 PDB:2JBA PDB:2Z33
PDB:3T72 PDBsum:1B00 PDBsum:1GXP PDBsum:1GXQ PDBsum:1QQI
PDBsum:1ZES PDBsum:2IYN PDBsum:2JB9 PDBsum:2JBA PDBsum:2Z33
PDBsum:3T72 ProteinModelPortal:P0AFJ5 SMR:P0AFJ5 DIP:DIP-35852N
IntAct:P0AFJ5 MINT:MINT-1313174 EnsemblBacteria:EBESCT00000002796
EnsemblBacteria:EBESCT00000016242 GeneID:12930822 GeneID:945046
KEGG:ecj:Y75_p0387 KEGG:eco:b0399 PATRIC:32115943 EchoBASE:EB0721
EcoGene:EG10728 KO:K07657 OMA:QVLEMGP ProtClustDB:PRK10161
BioCyc:EcoCyc:PHOB-MONOMER BioCyc:ECOL316407:JW0389-MONOMER
EvolutionaryTrace:P0AFJ5 Genevestigator:P0AFJ5 GO:GO:2000142
TIGRFAMs:TIGR02154 Uniprot:P0AFJ5
Length = 229
Score = 122 (48.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VE + R++V +L ++ ++ D A L P DLIL + LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 150 VWRRQSSM 157
V RR S M
Sbjct: 119 VMRRISPM 126
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 122 (48.0 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 34/125 (27%), Positives = 67/125 (53%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP 88
M++R+L+V+ D + R+ + L + Y V DG++A +++ RP D ++ +V +P
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP---DALVLDVMMP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148
+ G + + ++P+++++++DSVS + GA DYL KP EL +
Sbjct: 58 RLDGLEVCRQL--RGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMR 115
Query: 149 HVWRR 153
+ RR
Sbjct: 116 ALLRR 120
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 32/124 (25%), Positives = 61/124 (49%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSIS 91
R+L+V+ +D+ R++++ + +G A + P D++L ++ +P +
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP---DVVLMDIRMPEMD 62
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G L + HE PVI+M++ V T + + GA DY++KP +EL + Q
Sbjct: 63 GIKALKEMRSHET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120
Query: 152 RRQS 155
+ QS
Sbjct: 121 QLQS 124
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 122 (48.0 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 41/177 (23%), Positives = 85/177 (48%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +L+++ D +++ LR Y + DG +A +++ +DL++ ++ +P
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMIS--TYEVDLMILDIMMPK 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+G + V E+ +P++M+S++ +M GA DY++KP EL +
Sbjct: 59 RNGLEVCQEVRENN---TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKA 115
Query: 150 VWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEKGSDE 206
+ RR SS + + ++E G +I + + NH+ ++ GE+I+ S E
Sbjct: 116 LLRR-SSFQNASSPKNED-GMIRIRSAEIHK--HNHT------VKVNGEYIKLTSIE 162
>POMBASE|SPAC8C9.14 [details] [associations]
symbol:prr1 "transcription factor Prr1" species:4896
"Schizosaccharomyces pombe" [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000978 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding"
evidence=NAS] [GO:0001077 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:1900406 "regulation
of conjugation with cellular fusion by regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:1900427
"regulation of cellular response to oxidative stress by regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR000232 InterPro:IPR001789 InterPro:IPR014402
Pfam:PF00072 Pfam:PF00447 PIRSF:PIRSF002595 PRINTS:PR00056
PROSITE:PS00434 PROSITE:PS50110 SMART:SM00415 SMART:SM00448
PomBase:SPAC8C9.14 GO:GO:0005634 EMBL:CU329670 GO:GO:0006950
GenomeReviews:CU329670_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0000978 GO:GO:0001077 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 KO:K15859 EMBL:AB041768
EMBL:AB027943 PIR:T39150 RefSeq:NP_594284.1
ProteinModelPortal:O14283 STRING:O14283 EnsemblFungi:SPAC8C9.14.1
GeneID:2541756 KEGG:spo:SPAC8C9.14 OMA:QHGMNDI OrthoDB:EOG4TMV98
NextBio:20802847 GO:GO:1900427 GO:GO:1900406 Uniprot:O14283
Length = 539
Score = 133 (51.9 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 38/128 (29%), Positives = 62/128 (48%)
Query: 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI 78
G A T L + R+LLVE D+ +R++ L +V DG+ A V K
Sbjct: 355 GAAVPTTGLWKRQPRILLVEDDELSRRMTIKFLTSFDCQVDVAVDGIGA--VNKANAGGF 412
Query: 79 DLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
DLIL + LP++ G ++ L+ +++ N P++ ++S S++ G D LVKP
Sbjct: 413 DLILMDFILPNLDGLSVTCLIRQYD--HNTPILAITSNISMNDAVTYFNHGVTDLLVKPF 470
Query: 139 RRNELRNL 146
+ L L
Sbjct: 471 TKLTLLQL 478
Score = 40 (19.1 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 397 EKNFSNILTACNSYTPAATLSTQRSVNSLATGHSKQSELAVSYPQQ 442
+K N+L A NS + ST+ + + A A YPQQ
Sbjct: 480 KKQLLNLLQADNSINMSDVPSTKEAKDDKAPVTFYLENDAPMYPQQ 525
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 105 (42.0 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 36 LVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++ DDS + I +LLRK ++V G +A ++L G+ + DLI+T++++P + G
Sbjct: 4 ILALDDSATMLQSIKISLLRKG-HQVATFTKGSEALDML-GKEK-FDLIITDLNMPEMDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ V K PVI+++++ + + GA ++ KP +L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 105 (42.0 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 36 LVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++ DDS + I +LLRK ++V G +A ++L G+ + DLI+T++++P + G
Sbjct: 4 ILALDDSATMLQSIKISLLRKG-HQVATFTKGSEALDML-GKEK-FDLIITDLNMPEMDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ V K PVI+++++ + + GA ++ KP +L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 121 (47.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 37/123 (30%), Positives = 62/123 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L ++ +D I+ + L K + VTAV + L + K + + DLIL +V +P I G
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNPLT---IPKEKFCHYDLILLDVMMPEIDG 59
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR-NLWQHVW 151
F TL E + P++ ++++ + + G DY+ KP ELR + HV
Sbjct: 60 F---TLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHV- 115
Query: 152 RRQ 154
RR+
Sbjct: 116 RRE 118
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 122 (48.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 33/109 (30%), Positives = 57/109 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ +L++E D ++ L+ + Y T + DG A ++K + DLIL ++ LP +
Sbjct: 13 MHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIK--KLSPDLILLDLMLPGVD 70
Query: 92 GFALLTLVMEHEICKNIPVIMMSS-QDSVSTVYKCMMRGAADYLVKPVR 139
GF L E N P+I++++ +D +S V + GA DYL KP +
Sbjct: 71 GFELCKQAREFY---NGPIIVLTAMEDDLSEV-SLLKLGADDYLRKPAK 115
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 127 (49.8 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 31/123 (25%), Positives = 60/123 (48%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
++VL+V+ +++ R ++ L + Y V G +A + LK L + ++ +P I
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLK--EETFHLAIFDIKMPGID 62
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G LL ++ +N+ VI+++ ++ + M GA DYL KP EL Q +
Sbjct: 63 GIELLQRA--RQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAY 120
Query: 152 RRQ 154
++
Sbjct: 121 EKR 123
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 121 (47.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 38/141 (26%), Positives = 72/141 (51%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LLV+ ++ R+++ L K + V DG +A + + IDLI+ ++ LP I G
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALK--RFSEHKIDLIILDLMLPEIDGM 61
Query: 94 ALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ + + + +P+IM++++ + + + + GA DY+VKP E+ + V R
Sbjct: 62 EIAKEIRKTSL---VPIIMLTARGEEIDKILGLEI-GADDYVVKPFSPREVVARVKAVLR 117
Query: 153 RQSSMVSGNETQDESVGQQKI 173
R S + E + SV +Q I
Sbjct: 118 RSSGIP---EKEASSVIKQGI 135
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 43/148 (29%), Positives = 69/148 (46%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++LLV+ D ++ LL + V DG +A E+L +IDL+L +V +P +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDD---SIDLLLLDVMMPKKNG 59
Query: 93 F-ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
L L H+ PVIM++++ S + GA DYL KP EL + +
Sbjct: 60 IDTLKALRQTHQT----PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115
Query: 152 RRQSSMVSGNETQDESVGQQKIEATSEN 179
RR S ++ D +++A S N
Sbjct: 116 RR-SHWSEQQQSSDNGSPTLEVDALSLN 142
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 104 (41.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 39/148 (26%), Positives = 69/148 (46%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+RVLLV+ + + +V L + V DG +A + K D+++ ++ LP +
Sbjct: 32 IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEA--IAKFDKVGPDVLVLDIMLPDVD 89
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L V E ++ P + ++++DSV + GA DY+ KP EL + +
Sbjct: 90 GLEILRRVRESDVYT--PTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLL 147
Query: 152 RRQSSMVSGNETQDES--VGQQKIEATS 177
RR S + DE+ VG ++ S
Sbjct: 148 RRSSHL---ERPADEALRVGDLTLDGAS 172
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 128 (50.1 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL 87
+R RVL+V+ D S R+++ L++ Y V G + + R+ L++T++ +
Sbjct: 5 ERQPARVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFD--ERSPALVVTDLKM 62
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
P + GF LL + + VI++++ +V T M GA DY+ KP R+ L+
Sbjct: 63 PGMGGFRLLQEIKGRS--PDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
Score = 42 (19.8 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 24/96 (25%), Positives = 41/96 (42%)
Query: 274 ANTRAHFDEDTELETHRSDVILTSEVCNVPVNSP--RQVIDFMSAFNNHKPPSNNGASRF 331
A T A ++ E R D+ V +P++ P R+ + + H + +G R
Sbjct: 287 AATNADLEQAIEEGRFREDLYYRLSV--IPIHLPPLRERKEDIPLLVRHFA-ARHGGDRV 343
Query: 332 DSSPQ-LDLSLRRTHPDG---FENQVERKFILRHSN 363
+P+ L++ P EN VER I+R S+
Sbjct: 344 AFAPETLEVMADYGWPGNVRELENTVERLLIMRCSD 379
>TIGR_CMR|GSU_0811 [details] [associations]
symbol:GSU_0811 "nitrogen regulation protein NtrX"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0019740 "nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 KO:K13599 RefSeq:NP_951868.1
ProteinModelPortal:Q74EZ8 GeneID:2685237 KEGG:gsu:GSU0811
PATRIC:22024383 OMA:DIWMPRL BioCyc:GSUL243231:GH27-761-MONOMER
Uniprot:Q74EZ8
Length = 456
Score = 126 (49.4 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSISG 92
+L+V+ + R + +L YR DG++A E V K RP DL+L ++ +P + G
Sbjct: 5 ILVVDDEQDIRTALAGILEDEGYRTAFARDGVEALETVQKDRP---DLVLLDIWMPRLDG 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
L + + + V+MMS ++ T K GA D++ KP+
Sbjct: 62 METLQRLKTAD--PGLTVVMMSGHGTIETAVKSTKMGAFDFIEKPL 105
Score = 44 (20.5 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 16/78 (20%), Positives = 34/78 (43%)
Query: 322 PPS-NNGASRFDSSPQLDLSLRRTHPDGFENQVERKFILRHSNASAFTRYTNKPSEPQHS 380
PPS GA R P+ + +L + + ER+FI++ + ++ ++
Sbjct: 381 PPSIGEGAGREGVLPRSEAALEPSSLREAREEFEREFIIQKLEEYGWN--ISRTADAIEL 438
Query: 381 SLSGVCNQQKEFETDSEK 398
S + + K + D++K
Sbjct: 439 ERSNLYRKMKSYGIDAKK 456
>TIGR_CMR|CPS_4166 [details] [associations]
symbol:CPS_4166 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
KEGG:cps:CPS_4166 PATRIC:21471193
BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
Length = 508
Score = 127 (49.8 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 34/108 (31%), Positives = 55/108 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEV-LKGRPRNIDLILTEVDLPSI 90
L VL+V+ I+ L+ K YRV A + A ++ L P DLIL ++ +P +
Sbjct: 155 LNVLVVDDIADNIAIIKELI-KDKYRVKAALNAKTAMKICLSDLPP--DLILLDIMMPEV 211
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
G L + E+ + +NI VI +++ V K + GA DY+ KP+
Sbjct: 212 DGLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDYITKPI 259
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 121 (47.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 43/168 (25%), Positives = 79/168 (47%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ D R ++ L + Y+V + + + +L+ N LI+ ++ LP G
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERE--NFHLIVLDLMLPGEDG 64
Query: 93 FALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
++ + + IP++M++++ D V + + GA DYL KP EL + V
Sbjct: 65 LSICRRLRQQG--STIPIVMLTAKGDEVDRIIGLEL-GADDYLPKPFNPRELLARIKAVM 121
Query: 152 RRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEF 199
RRQ+ V G Q E+ + + S + A G A + + GEF
Sbjct: 122 RRQTQDVPGAPAQQEA--EIRFGEFSLDLATREMYHGDEAIVLTSGEF 167
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 120 (47.3 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 35/128 (27%), Positives = 64/128 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+RVL+VE + + I+ L Y V A +G A + + DLI+ ++ +P I+
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYIN--MATYDLIVLDIMIPGIN 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G +L + V++++++D++ K + GA DYLVKP +EL + +
Sbjct: 59 GLQVLQKLRADN--HTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLM 116
Query: 152 RRQSSMVS 159
RR++ S
Sbjct: 117 RRKTGNTS 124
>UNIPROTKB|Q9KRI8 [details] [associations]
symbol:VC_1653 "Sensory box sensor histidine
kinase/response regulator VieS" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001638
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00497 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005215
GO:GO:0030288 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K07679 HSSP:Q56310
PIR:A82174 RefSeq:NP_231290.1 ProteinModelPortal:Q9KRI8
DNASU:2613784 GeneID:2613784 KEGG:vch:VC1653 PATRIC:20082368
OMA:IGCTANA ProtClustDB:CLSK874479 Uniprot:Q9KRI8
Length = 1146
Score = 131 (51.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 3 DVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADDS-TRQIVTALLRKSSYRVTAV 61
D++LN L+E++ N A+ E R+ +LV DD+ R ++ L + T V
Sbjct: 891 DLLLN--RLREVS-NLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLV 947
Query: 62 PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV-MEHEICKNIPVIMMSSQDSVS 120
DGL+A+E L P DL++T+ +P + GFAL V E + K V+ +++DS
Sbjct: 948 SDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGA-VVGCTAEDSRL 1006
Query: 121 TVYKCMMRGAADYLVKPVRRNELRNL 146
+ + G + KP LR +
Sbjct: 1007 AAEQALQAGMDKVIYKPYTLANLRKV 1032
>TIGR_CMR|VC_1653 [details] [associations]
symbol:VC_1653 "sensory box sensor histidine
kinase/response regulator VieS" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001638 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497 Pfam:PF00512
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50894 SMART:SM00062 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005215 GO:GO:0030288 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07679 HSSP:Q56310 PIR:A82174 RefSeq:NP_231290.1
ProteinModelPortal:Q9KRI8 DNASU:2613784 GeneID:2613784
KEGG:vch:VC1653 PATRIC:20082368 OMA:IGCTANA ProtClustDB:CLSK874479
Uniprot:Q9KRI8
Length = 1146
Score = 131 (51.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 43/146 (29%), Positives = 71/146 (48%)
Query: 3 DVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADDS-TRQIVTALLRKSSYRVTAV 61
D++LN L+E++ N A+ E R+ +LV DD+ R ++ L + T V
Sbjct: 891 DLLLN--RLREVS-NLTQAQTEPAHSRLLQGHVLVADDDAINRLLIKKQLSELGLSATLV 947
Query: 62 PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV-MEHEICKNIPVIMMSSQDSVS 120
DGL+A+E L P DL++T+ +P + GFAL V E + K V+ +++DS
Sbjct: 948 SDGLQAFEKLSQHPEQYDLLITDCHMPHLDGFALTRKVKQEISLFKGA-VVGCTAEDSRL 1006
Query: 121 TVYKCMMRGAADYLVKPVRRNELRNL 146
+ + G + KP LR +
Sbjct: 1007 AAEQALQAGMDKVIYKPYTLANLRKV 1032
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 120 (47.3 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+VE ++S + LLRK + T V DG A + + D++L ++ LP +SG
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAA--LAEFDRAGADIVLLDLMLPGMSGT 61
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
+ + ++PVIM++++DS + GA DY+ KP EL + V RR
Sbjct: 62 DVCKQLRARS---SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 30/123 (24%), Positives = 59/123 (47%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ VL+V+ D + ++ LL VT+ G +A +++ R D+++T+ +P ++
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIV--RKTTFDMVITDFSMPGMN 61
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G L V E + ++PV+M++ + + + G L KPV L +H
Sbjct: 62 GLELAAAVKE--LHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFS 119
Query: 152 RRQ 154
RR+
Sbjct: 120 RRK 122
>DICTYBASE|DDB_G0277883 [details] [associations]
symbol:dhkJ "histidine kinase J" species:44689
"Dictyostelium discoideum" [GO:0005615 "extracellular space"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA] [GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0007165
"signal transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0000155 "phosphorelay sensor kinase
activity" evidence=IEA] [GO:0004673 "protein histidine kinase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0277883
GO:GO:0016021 GO:GO:0005524 GO:GO:0005615 GO:GO:0006355
GO:GO:0035556 GenomeReviews:CM000152_GR EMBL:AAFI02000023
GO:GO:0005622 GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P39928 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 EMBL:AF362372 RefSeq:XP_642053.2
ProteinModelPortal:Q54YZ9 EnsemblProtists:DDB0215385 GeneID:8621265
KEGG:ddi:DDB_G0277883 OMA:ACGDLSK Uniprot:Q54YZ9
Length = 2062
Score = 141 (54.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 35/113 (30%), Positives = 57/113 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LL E + +++ LL K +RV +GL+A V + R DLIL +V +P GF
Sbjct: 1731 ILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQA--VASSQLRKFDLILMDVQMPHCGGF 1788
Query: 94 ALLTLVM--EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+ EHE + P+I M++ KC+ G DY+ KP+ ++L+
Sbjct: 1789 EATAQIRKREHEQGIHTPIIAMTAHALARDRVKCLEAGMDDYISKPINPDQLK 1841
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 403 ILTACNSYTPAATLSTQRSVN 423
I +CNSY L Q+S N
Sbjct: 1850 ISKSCNSYEQFQQLQAQKSAN 1870
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 382 LSGVCNQQKEFETDSEKNFSNILTACNSY---TPAATLST 418
+S CN ++F+ + +N + + + Y TP T +T
Sbjct: 1850 ISKSCNSYEQFQQLQAQKSANYINSTSYYGQLTPTTTTTT 1889
>TIGR_CMR|CPS_4165 [details] [associations]
symbol:CPS_4165 "sensory box histidine kinase/response
regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0009927 "histidine phosphotransfer kinase
activity" evidence=ISS] InterPro:IPR000014 InterPro:IPR001638
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00497 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50894
SMART:SM00062 SMART:SM00073 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005215 GO:GO:0030288 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 RefSeq:YP_270817.1 ProteinModelPortal:Q47WK5
STRING:Q47WK5 GeneID:3522010 KEGG:cps:CPS_4165 PATRIC:21471191
OMA:GNFIKHN ProtClustDB:CLSK938303
BioCyc:CPSY167879:GI48-4175-MONOMER Uniprot:Q47WK5
Length = 1683
Score = 132 (51.5 bits), Expect = 0.00012, P = 0.00012
Identities = 35/132 (26%), Positives = 69/132 (52%)
Query: 12 KEMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL 71
+EM ++ + + + L ++LLVE ++ +++ LL++S+ V +G A E
Sbjct: 1323 REMKRDDELIQNQQHLS--GAKILLVEDNELNQELALELLKQSNIDVELAENGAIAVE-- 1378
Query: 72 KGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131
K R+ D IL ++ +P + GF ++ E + +IP+I M++ VS K + G
Sbjct: 1379 KFSSRHFDGILMDLQMPVMDGFTATKIIRESD--SSIPIIAMTANAMVSDKEKVLASGMN 1436
Query: 132 DYLVKPVRRNEL 143
D++ KP+ N +
Sbjct: 1437 DHITKPINVNTM 1448
>TIGR_CMR|GSU_1265 [details] [associations]
symbol:GSU_1265 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
HOGENOM:HOG000217841 RefSeq:NP_952318.1 ProteinModelPortal:Q74DQ0
GeneID:2685795 KEGG:gsu:GSU1265 PATRIC:22025301 OMA:SHITHEF
ProtClustDB:CLSK743116 BioCyc:GSUL243231:GH27-1218-MONOMER
Uniprot:Q74DQ0
Length = 445
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL+ E + R ++ A LR +S++V + +G +A ++ + DL+L ++ +P +
Sbjct: 323 LRVLVAEDAEDIRLLIAAFLRGASHQVCSAGNGQEALDMFMAE--DFDLVLMDIQMPVMD 380
Query: 92 GFALLTLVMEHEICKN---IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G+ + E E + +PV+ +++ S K + G +L KP+R++ L
Sbjct: 381 GYTATRALREWERQRGRTPVPVVALTACAEKSDSLKTIEAGCTSHLSKPIRKDTL 435
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M + VL+V+ + S R+ + LL + Y V +A L+ + DL++++V +P
Sbjct: 1 MEIHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERK--TYDLVISDVKMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ G LL + E + + V++M++ + + M GA DY+ KP + E++ L
Sbjct: 59 LDGITLLGRIKE--MTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKIL 113
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 34/122 (27%), Positives = 58/122 (47%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG---LKAWEVLKGRPRNIDLILTEVDLP 88
++ L+VE D +R+I+ LL S DG ++A+ + R DL+ ++ +P
Sbjct: 1 MKTLIVEDDFISRKIMKELLT-SLGECDIATDGEEAVQAFRLALDEHRPYDLVCMDIMMP 59
Query: 89 SISGFALLTLVMEHEI------CKNIPVIMMSSQDSVSTVYKCMMRGAA-DYLVKPVRRN 141
++ G L + E E + + VIM ++ D V + RG A YLVKP+ +
Sbjct: 60 NMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQ 119
Query: 142 EL 143
L
Sbjct: 120 RL 121
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 31/110 (28%), Positives = 57/110 (51%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+V+ + R+ + +L K Y V G A E L+ N L++T++ +P +SG
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDE--NYGLVITDLKMPGMSGM 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+L + + +PVI+++ +V T + M GA DY+ KP +++
Sbjct: 64 EVLKAIKVLQ--PEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQI 111
>TIGR_CMR|CPS_3305 [details] [associations]
symbol:CPS_3305 "DNA-binding response regulator BaeR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0042493 "response to
drug" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K07664 RefSeq:YP_269981.1
ProteinModelPortal:Q47YY9 STRING:Q47YY9 GeneID:3519397
KEGG:cps:CPS_3305 PATRIC:21469577 OMA:VENTHGS
BioCyc:CPSY167879:GI48-3334-MONOMER Uniprot:Q47YY9
Length = 232
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 39/153 (25%), Positives = 75/153 (49%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE ++ ++ L K+ Y+ T + +G + +K + + DLIL ++ LP G
Sbjct: 4 ILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQ--HFDLILLDLMLPGKDG- 60
Query: 94 ALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
LT+ E + NI +IM++++ D + + + GA DY+ KP E+ + + R
Sbjct: 61 --LTICREIQEFSNIAIIMVTARVDEIDRLLGLEL-GADDYICKPFSPREVVARVKTILR 117
Query: 153 R-QSSMVSGNETQDESVGQQK-IEATSENDAAS 183
R + +G T Q +E ++N A+
Sbjct: 118 RINPPLTTGINTNIAKQSQTTTVELNTDNYQAT 150
>TIGR_CMR|GSU_3418 [details] [associations]
symbol:GSU_3418 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_954458.1 ProteinModelPortal:Q746V0 GeneID:2686607
KEGG:gsu:GSU3418 PATRIC:22029693 OMA:LSIYSFP
ProtClustDB:CLSK2522262 BioCyc:GSUL243231:GH27-3392-MONOMER
Uniprot:Q746V0
Length = 490
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 34 VLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+LLV+ + + + ++ LR+++ + D + ++L R + LIL ++ +P S
Sbjct: 11 ILLVDDEAAWLRSLSLTLREATGIDNIIKCSDSRQVMDIL--RETEVSLILLDLTMPYFS 68
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G LL ++ + +IPVI++S + V T +CM GA DY VK V + L
Sbjct: 69 GTDLLQMIGQEY--PDIPVIVLSGLNQVETAVRCMQLGAFDYYVKTVEKERL 118
>UNIPROTKB|P0AD01 [details] [associations]
symbol:dcuR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0009605 "response
to external stimulus" evidence=IEA] [GO:0001071 "nucleic acid
binding transcription factor activity" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U14003 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
PIR:C65222 RefSeq:NP_418548.1 RefSeq:YP_492267.1
ProteinModelPortal:P0AD01 SMR:P0AD01 DIP:DIP-48032N IntAct:P0AD01
EnsemblBacteria:EBESCT00000001250 EnsemblBacteria:EBESCT00000001251
EnsemblBacteria:EBESCT00000014747 GeneID:12932986 GeneID:948640
KEGG:ecj:Y75_p4011 KEGG:eco:b4124 PATRIC:32123813 EchoBASE:EB2357
EcoGene:EG12464 eggNOG:COG4565 HOGENOM:HOG000034816 KO:K07703
OMA:FQFSRFE ProtClustDB:PRK10430 BioCyc:EcoCyc:DCUR-MONOMER
BioCyc:ECOL316407:JW4085-MONOMER Genevestigator:P0AD01
Uniprot:P0AD01
Length = 239
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 66 KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKC 125
KA E++ IDLIL ++ + +G LL V+ + CK+ VI++SS +T+
Sbjct: 38 KAKEIIFNSDTPIDLILLDIYMQKENGLDLLP-VLHNARCKS-DVIVISSAADAATIKDS 95
Query: 126 MMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSEND 180
+ G DYL+KP + + WR++ + ++ D++ Q I +S N+
Sbjct: 96 LHYGVVDYLIKPFQASRFEEALTG-WRQKKMALEKHQYYDQAELDQLIHGSSSNE 149
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 115 (45.5 bits), Expect = 0.00016, P = 0.00015
Identities = 29/114 (25%), Positives = 55/114 (48%)
Query: 34 VLLVEADDSTRQIVTALLRK--SSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSI 90
+++VE D ++ + + V G +A ++ K +P +I ++ +P I
Sbjct: 66 IIIVEDDKQHADLLVEFIEVLYPKFEVKVAYSGFEAGSMIEKIKP---SIIFLDLVMPDI 122
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
GFA+ + +E KN P+I MS + K + GA +L+KP+R + L+
Sbjct: 123 DGFAVCKHIRSNEASKNTPIIAMSGLSQQENIEKVIASGANTFLMKPIRLSVLK 176
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 37/170 (21%), Positives = 78/170 (45%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+V +V+ + I+ L + YR DG++A + L+ + DL+L ++ +P + G
Sbjct: 5 KVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERE--SFDLVLLDIRMPRMDG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+L + + ++ VIMM++ S + M +GA DY+ KP ++++ +
Sbjct: 63 IEVLERIRDR--WPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMK-------K 113
Query: 153 RQSSMVSGNETQDESVGQQKI--EATSENDAASNHSSGYMACIQSKGEFI 200
R + N T+ E+ Q++ E + A + + + +G I
Sbjct: 114 RVERAIQFNRTRLENERLQRVLDEERRKMGAILRGMADLLVAVDREGRII 163
>TIGR_CMR|DET_0624 [details] [associations]
symbol:DET_0624 "response regulator" species:243164
"Dehalococcoides ethenogenes 195" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 Pfam:PF01966 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
eggNOG:COG3437 Gene3D:1.10.3210.10 InterPro:IPR006675
TIGRFAMs:TIGR00277 RefSeq:YP_181366.1 ProteinModelPortal:Q3Z8T3
STRING:Q3Z8T3 GeneID:3230017 KEGG:det:DET0624 PATRIC:21608315
HOGENOM:HOG000266481 OMA:WEELKRC ProtClustDB:CLSK837371
BioCyc:DETH243164:GJNF-625-MONOMER Uniprot:Q3Z8T3
Length = 334
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL V+ +D+ R+++ L Y+ + +A E++K + ++ L + ++ +P +SG
Sbjct: 8 VLTVDDEDTIRRLLYQKLTSEGYKCLTASNATEAMEIIKSQ--DVSLAILDIKMPGLSGM 65
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
+ + I + VIM ++ T CM GA DY+ KP +
Sbjct: 66 DIFPEI--RTISPDTAVIMATAISDTDTAIACMKLGAYDYVTKPFK 109
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 34/128 (26%), Positives = 64/128 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+ L+E DD RQ L+ + + V DG A ++ ++ ++++V LP G
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIE--QQSFAAVVSDVRLPDTDG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN-LWQHVW 151
+LL + + +PVI+++ V K + +GA D++ KP + L N + Q V
Sbjct: 63 LSLLVALKN--VQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
Query: 152 RRQSSMVS 159
+ Q+++ S
Sbjct: 121 QYQNALSS 128
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 34/128 (26%), Positives = 64/128 (50%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+ L+E DD RQ L+ + + V DG A ++ ++ ++++V LP G
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIE--QQSFAAVVSDVRLPDTDG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN-LWQHVW 151
+LL + + +PVI+++ V K + +GA D++ KP + L N + Q V
Sbjct: 63 LSLLVALKN--VQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
Query: 152 RRQSSMVS 159
+ Q+++ S
Sbjct: 121 QYQNALSS 128
>TIGR_CMR|DET_1231 [details] [associations]
symbol:DET_1231 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_181944.1 ProteinModelPortal:Q3Z755 STRING:Q3Z755
GeneID:3229494 KEGG:det:DET1231 PATRIC:21609493 OMA:HIWESES
ProtClustDB:CLSK741625 BioCyc:DETH243164:GJNF-1232-MONOMER
Uniprot:Q3Z755
Length = 225
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 34/130 (26%), Positives = 66/130 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +++LL+E D + +++T+ L ++ Y V +G E+ D+I+ ++ LP
Sbjct: 1 MLMKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAY--TFDVIILDIMLPE 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ GFA+ + + P+IM++++ + + GA DYLVKP EL +
Sbjct: 59 LDGFAVCHKIRSNG--NQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRA 116
Query: 150 VWRRQSSMVS 159
+ RR ++ S
Sbjct: 117 LLRRANNQHS 126
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L VE D RQIV L +V DG + ++ + + D+IL ++ +P + G
Sbjct: 8 ILWVEDDPVFRQIVATFLSGRGAQVVQAGDGEQG--LIHFKQQRFDIILADLSMPKLGGL 65
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+L + + E +P I++S + ++ V + + GA DYLVKPV
Sbjct: 66 DMLKEMSKLEPL--VPSIVISGNNVMADVVEALRIGACDYLVKPV 108
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 33/132 (25%), Positives = 70/132 (53%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++LLV+ ++ +++ L Y GL+A ++++ ++ D+IL +V +P++
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIE--QKDFDIILLDVMMPNMD 59
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G+ T +I N+P+IM+++++ + K + GA DY+ KP + L + +
Sbjct: 60 GWD--TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAIL 116
Query: 152 RR--QSSMVSGN 161
RR + VS N
Sbjct: 117 RRTKKDGFVSFN 128
>TIGR_CMR|CPS_2473 [details] [associations]
symbol:CPS_2473 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_269189.1 ProteinModelPortal:Q481T0
STRING:Q481T0 GeneID:3519581 KEGG:cps:CPS_2473 PATRIC:21468015
ProtClustDB:CLSK869033 BioCyc:CPSY167879:GI48-2536-MONOMER
Uniprot:Q481T0
Length = 242
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 35/123 (28%), Positives = 65/123 (52%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSIS 91
++L+V+ D+ TRQ++++ Y V+ +A E+L G +DLIL ++ +P
Sbjct: 6 KILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLILG---TVDLILLDIRMPGKD 62
Query: 92 GFALLTLVMEHEICKNIPVIMMS-SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G LTL E + + +I+++ SQD V + + GA +Y+ KP E+ +++
Sbjct: 63 G---LTLTRELRVNNEVGIILVTGSQDEVDRLIG-LECGADEYVTKPFNPREILARAKNL 118
Query: 151 WRR 153
RR
Sbjct: 119 IRR 121
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 30/110 (27%), Positives = 61/110 (55%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVDLP 88
M+ R+L+V+ ++ +++ A L Y V+ DG A L R++ D+IL +V +P
Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTA---LAMAARDLPDIILLDVMMP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+ GF + + + ++IPV+++++ D + + GA+D+L KP+
Sbjct: 58 GMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 31/112 (27%), Positives = 58/112 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
++VL+VE + + L + Y V A +G + ++ + DLI+ +V LP
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKM--ALDKGYDLIVLDVMLPKKD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +++ + E + + PV+M++++DSV + + G+ DYL KP EL
Sbjct: 59 GLSVVRELRERK--NSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAEL 108
>TIGR_CMR|GSU_1250 [details] [associations]
symbol:GSU_1250 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 HOGENOM:HOG000058487
RefSeq:NP_952303.1 ProteinModelPortal:Q74DR5 GeneID:2688151
KEGG:gsu:GSU1250 PATRIC:22025271 OMA:LQEQEYY ProtClustDB:CLSK828266
BioCyc:GSUL243231:GH27-1278-MONOMER Uniprot:Q74DR5
Length = 469
Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
Identities = 32/114 (28%), Positives = 59/114 (51%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
A ++LV+ +++ + +L + + V + D + +L+ + ++ ++ +P
Sbjct: 6 AQTIVLVDDEENILKASRLILLGNGFGNVVTLQDSRQLMPLLE--QGGVAAVVLDLFMPH 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+SG LL L++E +IP I+M++ D T CM GA DYLVKPV L
Sbjct: 64 LSGTELLPLIVER--FPHIPAIVMTAVDETETAVTCMKSGAFDYLVKPVESGRL 115
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 114 (45.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 32/123 (26%), Positives = 61/123 (49%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-I 90
+R+LL+E D + + V A L + + + + + + D+++ ++ P I
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G+ +L + E I +PV+++S SV+ K + GA DY+ KP ++EL + V
Sbjct: 61 DGYDILVKLRESGI--RVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAV 118
Query: 151 WRR 153
RR
Sbjct: 119 VRR 121
Score = 45 (20.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 468 DSLEDLGHISPATDQSASSSFCNGAVSRLNSMGYG 502
+S+ +G+IS D S CNG + L YG
Sbjct: 127 ESIVRVGNISINLDHKCVS--CNGNIIHLTKKEYG 159
>ASPGD|ASPL0000049453 [details] [associations]
symbol:tcsB species:162425 "Emericella nidulans"
[GO:0004673 "protein histidine kinase activity" evidence=IGI;ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IGI;ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=IGI;ISS] [GO:0006468 "protein
phosphorylation" evidence=IGI;ISS] [GO:0005886 "plasma membrane"
evidence=IGI;ISS] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=IEA] [GO:0005034 "osmosensor activity" evidence=IEA]
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0006469 "negative regulation of protein kinase
activity" evidence=IEA] [GO:0070795 "positive regulation of
conidiophore development" evidence=IEA] [GO:0070787 "conidiophore
development" evidence=IEA] [GO:0046777 "protein
autophosphorylation" evidence=IEA] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0005887
GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161 KO:K11231
OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 127 (49.8 bits), Expect = 0.00024, P = 0.00024
Identities = 31/119 (26%), Positives = 61/119 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRN---IDLILTEVDL 87
+R L+ E + +++V +L + Y VT V DG +A++ +K DLI ++ +
Sbjct: 933 IRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQM 992
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
P++ G L+ + C + P++ +S+ S + CM G ++ KP+RR L+ +
Sbjct: 993 PNLDGIESTRLIRQMG-C-SAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPALKQV 1049
>UNIPROTKB|Q9P4U6 [details] [associations]
symbol:tcsB "Two-component system protein B" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IGI] [GO:0000156 "phosphorelay response
regulator activity" evidence=IGI] [GO:0000161 "MAPK cascade
involved in osmosensory signaling pathway" evidence=TAS]
[GO:0005887 "integral to plasma membrane" evidence=NAS] [GO:0023014
"signal transduction by phosphorylation" evidence=IGI]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0005887 GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161
KO:K11231 OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 127 (49.8 bits), Expect = 0.00024, P = 0.00024
Identities = 31/119 (26%), Positives = 61/119 (51%)
Query: 32 LRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRN---IDLILTEVDL 87
+R L+ E + +++V +L + Y VT V DG +A++ +K DLI ++ +
Sbjct: 933 IRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEEGKVFDLIFMDIQM 992
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
P++ G L+ + C + P++ +S+ S + CM G ++ KP+RR L+ +
Sbjct: 993 PNLDGIESTRLIRQMG-C-SAPIVALSAFSEDSNIKDCMNSGMDMFISKPIRRPALKQV 1049
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 37/134 (27%), Positives = 65/134 (48%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL++E D S ++ L + + V +G + + K DLIL ++ LP I G
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLK--KALEEEYDLILLDLMLPGIDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL-RNLWQHVW 151
F +L V K+ PV+++S++ + + GA DY+ KP +EL + H+
Sbjct: 61 FEVLRKVRAE---KDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIG 117
Query: 152 RRQSSMVSGNETQD 165
R + + G + QD
Sbjct: 118 RYER-LTGGRKNQD 130
>TIGR_CMR|GSU_2314 [details] [associations]
symbol:GSU_2314 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845
HSSP:P06143 RefSeq:NP_953363.2 GeneID:2687347 KEGG:gsu:GSU2314
PATRIC:22027483 HOGENOM:HOG000144277 ProtClustDB:CLSK2306793
BioCyc:GSUL243231:GH27-2320-MONOMER Uniprot:Q74AN8
Length = 1025
Score = 136 (52.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 36/129 (27%), Positives = 65/129 (50%)
Query: 13 EMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK 72
E +G +G + + L +R+LLVE + + RQ+ ++++ R A +G +A ++L
Sbjct: 749 EPDGGDGPLQLLSDLGHDDVRILLVEDNATNRQVALGIIKRLGLRGDAAANGAEALDLLA 808
Query: 73 GRPRNIDLILTEVDLPSISGFALLTLVMEHE---ICKNIPVIMMSSQDSVSTVYKCMMRG 129
P DL+L +V +P + GF + + + IPVI +++ KC+ G
Sbjct: 809 TTP--YDLVLMDVQMPVMDGFEATRHIRDVRSPVLNHEIPVIALTAHAMKGDRRKCLDAG 866
Query: 130 AADYLVKPV 138
DYL KP+
Sbjct: 867 MNDYLAKPI 875
Score = 38 (18.4 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 216 EAESAHVEDMPDLSRQL 232
E +A + DMPDL +L
Sbjct: 934 EVVAAFLADMPDLIERL 950
>TIGR_CMR|CPS_4695 [details] [associations]
symbol:CPS_4695 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR012827 InterPro:IPR016131 Pfam:PF00072 PROSITE:PS00550
PROSITE:PS50110 SMART:SM00448 Pfam:PF01814 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2197 InterPro:IPR012312
Gene3D:1.20.120.50 SUPFAM:SSF47188 TIGRFAMs:TIGR02481
RefSeq:YP_271339.1 ProteinModelPortal:Q47V33 STRING:Q47V33
GeneID:3520526 KEGG:cps:CPS_4695 PATRIC:21472209 OMA:FDNYFVY
ProtClustDB:CLSK938206 BioCyc:CPSY167879:GI48-4701-MONOMER
Uniprot:Q47V33
Length = 519
Score = 123 (48.4 bits), Expect = 0.00026, P = 0.00026
Identities = 36/147 (24%), Positives = 70/147 (47%)
Query: 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86
L+ ++L+ E+ D +++ + + + V DG A E K R D++L D
Sbjct: 251 LKTSRYKILIAESSDLFTKVIEEIFADTVFIYALVNDGQAALE--KIRTFKPDVVLLAYD 308
Query: 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
LP I+G + L+ E +PVI + S + + + G + YL+KP++++ + N
Sbjct: 309 LPIINGLEVTRLIREEG--NKVPVIAYAHHKDKSVIKRWIPFGLSGYLIKPLKKSAILNS 366
Query: 147 WQHVWRRQSSMVSGNETQDESVGQQKI 173
+ ++S ++ D+ VG Q I
Sbjct: 367 VTKAVKNPIEIISHHKVADK-VGIQWI 392
>UNIPROTKB|P74294 [details] [associations]
symbol:slr1693 "PatA subfamily" species:1111708
"Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:BA000022 GenomeReviews:BA000022_GR PIR:S75929
RefSeq:NP_441708.1 RefSeq:YP_005651766.1 ProteinModelPortal:P74294
DIP:DIP-36643N IntAct:P74294 STRING:P74294 GeneID:12254421
GeneID:953001 KEGG:syn:slr1693 KEGG:syy:SYNGTS_1813 PATRIC:23840894
HOGENOM:HOG000035632 OMA:CIDDSET ProtClustDB:CLSK892620
InterPro:IPR024186 PIRSF:PIRSF005897 Uniprot:P74294
Length = 380
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 29/110 (26%), Positives = 56/110 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V V+ + ++++T L K YR + D +A VL P N LI+ DLP ++G+
Sbjct: 258 VAYVDHREVQQRMMTYSLEKEGYRALVLDDPFRALTVLLNSPPN--LIIINTDLPDMNGY 315
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
L + + K++P++++ D++ + + + A+ YL +P EL
Sbjct: 316 QLCSFCRKSNQLKDVPILLLGKGDNLISGIRIKLCQASGYLSEPFVPEEL 365
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 27/118 (22%), Positives = 64/118 (54%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVL-----KGRPRNIDLILTEV 85
+ +L+V+ + ++ +L+++ Y+ + ++ + +E + R IDLIL ++
Sbjct: 1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+P I G + + + E K+IP+I +++ + + + + + GA DY+ KP+ + EL
Sbjct: 61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 126 (49.4 bits), Expect = 0.00026, P = 0.00026
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88
++A+ V+ V+ + + +++ ALL V G +A E K P DLIL ++ +P
Sbjct: 665 KLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMP--FDLILMDIQMP 722
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ G L+ + + PVI +++ K + G +DYL KP+ L NL
Sbjct: 723 DMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNL 780
>DICTYBASE|DDB_G0270056 [details] [associations]
symbol:DDB_G0270056 species:44689 "Dictyostelium
discoideum" [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 dictyBase:DDB_G0270056
EMBL:AAFI02000005 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
RefSeq:XP_646510.1 ProteinModelPortal:Q55CH1
EnsemblProtists:DDB0190773 GeneID:8617471 KEGG:ddi:DDB_G0270056
InParanoid:Q55CH1 OMA:IHTRRIE Uniprot:Q55CH1
Length = 1432
Score = 128 (50.1 bits), Expect = 0.00027, P = 0.00027
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 34 VLLVEADDSTRQIVTALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
V++VE +D + LL K R V DGL+A + K LIL ++ +P +
Sbjct: 1306 VMVVEDNDMNAGFLLKLLEKFGVINKRCIWVTDGLQAVQHYKSSNGPFRLILMDLFMPIM 1365
Query: 91 SGFALLTLVMEHE-ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
G+ ++ + E K+ P++ +++ + KC+M G DY+ KP+R EL+++
Sbjct: 1366 DGYEATNIIRQLEGEHKHTPIVTVTANVTKGAKEKCLMNGFDDYIAKPIRAEELKHV 1422
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 34/121 (28%), Positives = 58/121 (47%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+VE D ++ + LL+ +Y DG A E N DL++ +++LP G
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRE--NFDLVILDLNLPKQDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
F++L + E ++PVI+++++ G DYL KP EL + V R
Sbjct: 61 FSVLKEIKNRE---DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLR 117
Query: 153 R 153
R
Sbjct: 118 R 118
>UNIPROTKB|Q0BZW4 [details] [associations]
symbol:pleD "Response regulator PleD" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
Length = 455
Score = 123 (48.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M R+L+V+ ++ R+++ A L + V +G +A EV + N ++IL +V +P
Sbjct: 1 MTARILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEV--AQRENPEIILLDVMMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+ G+ + + IPV+M+++ + K + GA D+L KPV
Sbjct: 59 MDGYEVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPV 107
Score = 42 (19.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 357 FILRHSNASAFTRYTNKPSEPQHSSLSGV-CNQQKEFETDSEKNFSNILTACNSYTPAAT 415
F+L +S +A RY SE + SG+ +E D S I +
Sbjct: 110 FLL-NSRITALMRYNTVASELRQREASGIRSGAMEELNRDEVDRPSRIFIVDDD-----A 163
Query: 416 LSTQRSVNSL-ATGH 429
S+ R N+L A GH
Sbjct: 164 RSSGRLANTLRAQGH 178
>UNIPROTKB|O07776 [details] [associations]
symbol:tcrA "Transcriptional regulatory protein TcrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000156 "phosphorelay
response regulator activity" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0035556 "intracellular signal
transduction" evidence=IDA] [GO:0070298 "negative regulation of
phosphorelay signal transduction system" evidence=IDA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005886
GO:GO:0005737 GO:GO:0006355 GenomeReviews:AL123456_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:BX842574
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 GO:GO:0070298 PIR:E70909 RefSeq:NP_215116.1
RefSeq:YP_006513938.1 HSSP:Q9WYN0 ProteinModelPortal:O07776
SMR:O07776 PRIDE:O07776 EnsemblBacteria:EBMYCT00000002096
GeneID:13318480 GeneID:887870 KEGG:mtu:Rv0602c KEGG:mtv:RVBD_0602c
PATRIC:18149834 TubercuList:Rv0602c KO:K02483
ProtClustDB:CLSK790622 Uniprot:O07776
Length = 253
Score = 117 (46.2 bits), Expect = 0.00031, P = 0.00031
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+R+L+VE + ++ L + + V V DG A + G + D ++ +V LP I
Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGG--DYDAVVLDVMLPGID 80
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
GF + + + PV+M++++ +V+ + GA DYL KP +EL
Sbjct: 81 GFEVCARLRRQRVWT--PVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDEL 130
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 38/139 (27%), Positives = 64/139 (46%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEV-LKGRPRNIDLILTEVDLPSI 90
LR+LL E D++ ++ L+ Y PDG ++ LK + DL + +V +P
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNK---YDLCVFDVMMPKK 64
Query: 91 SGFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
GF TL E IP+I ++++ + + GA DY+ KP EL +
Sbjct: 65 DGF---TLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEA 121
Query: 150 VWRRQSSMVSGNETQDESV 168
+ RR V G + ++ +V
Sbjct: 122 ILRR----VRGKKNKESNV 136
>UNIPROTKB|Q9KSB1 [details] [associations]
symbol:VC_1348 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 SMART:SM00471
GO:GO:0006355 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008152 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
KO:K07814 PIR:G82211 RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1
DNASU:2614802 GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772
OMA:DNPRSRH ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 56 YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115
YR+ A G A E+L P IDL+L ++ +P +SG+ ++ + + ++IPVI ++
Sbjct: 94 YRIKAARSGKVALEILAQYP--IDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTG 151
Query: 116 QDSVSTVYKCMMRGAADYLVKPVRRNELRN-LWQHVWRRQSS--MVSGNETQDESVGQQK 172
+ + GA DY+ KPV L++ + H+ ++S +++ N+ + V ++
Sbjct: 152 KSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHLQNKRSKDILLNQNDYLETEVLRRS 211
Query: 173 IEATSENDA 181
E DA
Sbjct: 212 GELDRMQDA 220
>TIGR_CMR|VC_1348 [details] [associations]
symbol:VC_1348 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008152 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HSSP:Q9A5I4 KO:K07814 PIR:G82211
RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1 DNASU:2614802
GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772 OMA:DNPRSRH
ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 121 (47.7 bits), Expect = 0.00033, P = 0.00033
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 56 YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115
YR+ A G A E+L P IDL+L ++ +P +SG+ ++ + + ++IPVI ++
Sbjct: 94 YRIKAARSGKVALEILAQYP--IDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTG 151
Query: 116 QDSVSTVYKCMMRGAADYLVKPVRRNELRN-LWQHVWRRQSS--MVSGNETQDESVGQQK 172
+ + GA DY+ KPV L++ + H+ ++S +++ N+ + V ++
Sbjct: 152 KSNPEDEQLGFELGAVDYVFKPVSIPLLKSRVHTHLQNKRSKDILLNQNDYLETEVLRRS 211
Query: 173 IEATSENDA 181
E DA
Sbjct: 212 GELDRMQDA 220
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 121 (47.7 bits), Expect = 0.00035, P = 0.00035
Identities = 38/147 (25%), Positives = 73/147 (49%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M R+L+ E D + R + +L+ Y + DG +A +L R + DL+L+++ +P
Sbjct: 1 MTTRILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALL--RRESFDLVLSDLRMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQ 148
I G LL + + +++++ ++ + GAAD+L KP++ + LR L
Sbjct: 59 IGGLELLRASRDDDYPPAF--VILTAFGTIEEAVAAVKEGAADFLTKPLKDPDTLRVL-- 114
Query: 149 HVWRRQSSMVSGNETQDESVGQQKIEA 175
V R ++SG + E + ++ EA
Sbjct: 115 -VGR----VLSGKSREREYLALKETEA 136
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 126 (49.4 bits), Expect = 0.00035, P = 0.00035
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 35 LLVEADDS--TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
LL+ ADD +++ + LR YRV DG + E +K R + +L+L ++ +P +SG
Sbjct: 771 LLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK-REKP-ELVLLDIMMPGMSG 828
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR-NLWQHVW 151
+ + + + +P+IM+++ + + GA DYL KP + EL + H+
Sbjct: 829 YQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
Query: 152 RRQSSM--VSGNETQDESVGQQKIEAT 176
++ + + + Q E + +EA+
Sbjct: 889 ASKAELRRIENAQLQKELKHRAMVEAS 915
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 126 (49.4 bits), Expect = 0.00035, P = 0.00035
Identities = 37/147 (25%), Positives = 73/147 (49%)
Query: 35 LLVEADDS--TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
LL+ ADD +++ + LR YRV DG + E +K R + +L+L ++ +P +SG
Sbjct: 771 LLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIK-REKP-ELVLLDIMMPGMSG 828
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR-NLWQHVW 151
+ + + + +P+IM+++ + + GA DYL KP + EL + H+
Sbjct: 829 YQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
Query: 152 RRQSSM--VSGNETQDESVGQQKIEAT 176
++ + + + Q E + +EA+
Sbjct: 889 ASKAELRRIENAQLQKELKHRAMVEAS 915
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 98 (39.6 bits), Expect = 0.00036, P = 0.00036
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP 88
MA RV++V+ R ++ +L + Y V A DG +A V+ R D++ ++ +P
Sbjct: 1 MAKRVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEA--VVTFRDVRPDVVTLDIIMP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148
+G L +M I V++ S+ S V K GA D+++KP ++++ +
Sbjct: 59 VKNGIEALREIMA--IDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMK 116
Query: 149 HV 150
V
Sbjct: 117 QV 118
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 121 (47.7 bits), Expect = 0.00036, P = 0.00036
Identities = 31/114 (27%), Positives = 62/114 (54%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +L+V+ + ++++ L ++ +V +GL A +VL+ +IDL++++ +P
Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLE--QEDIDLVISDWRMPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G LL + + +PVI+M++ +V + M GA DY+ KP +EL
Sbjct: 59 MDGPQLLGEIKQRY--PQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 115 (45.5 bits), Expect = 0.00038, P = 0.00038
Identities = 31/122 (25%), Positives = 62/122 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++L+ E D RQ + +L + Y V +G A +LK + D I+ ++ +P +
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVA--LLKYQQEQPDFIILDIMMPELD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G+++ + +H+ + PVI +S++ + GA DY+ KP +E+R + +
Sbjct: 59 GYSVCKEIRKHD--EQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIA 116
Query: 152 RR 153
RR
Sbjct: 117 RR 118
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 114 (45.2 bits), Expect = 0.00047, P = 0.00047
Identities = 39/175 (22%), Positives = 76/175 (43%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+RVL++E + + ++ + G + R N DLI+ ++ LP
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHL--ARTENYDLIILDIMLPGRD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL----RNLW 147
G+ +L + + +PVI +S++D+V + + GA DYLVKP +EL R +
Sbjct: 59 GWEVLEELRKEG--SEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTIL 116
Query: 148 QHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYMACIQSKGEFIEK 202
+ RQ + ++ + + VG + D + ++ KGE + +
Sbjct: 117 RRGPSRQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSR 171
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 116 (45.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 30/113 (26%), Positives = 57/113 (50%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-I 90
+R+LL+E D + + V A L + + + + + + D+++ ++ P I
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G+ +L + E I +PV+++S SVS K + GA DY+ KP ++EL
Sbjct: 61 DGYDILVKLRESGI--KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSEL 111
Score = 39 (18.8 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 468 DSLEDLGHISPATDQSASSSFCNGAVSRLNSMGYG 502
+S+ +G+I+ D CNG + L YG
Sbjct: 127 ESIVRVGNIAINLDHKCVE--CNGEIVHLTKKEYG 159
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+V+ D R ++ LR+ + + DG + +L + +DL++ ++ +P G
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQA--VDLVILDIMMPGDDG- 63
Query: 94 ALLTLVMEHEICKNIPVIMMSS-QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
LTL + IP++M+++ + V + M GA DYL KP EL + + R
Sbjct: 64 --LTLCRQMRANSTIPILMLTAISEEVDRILGLEM-GADDYLSKPFNPRELLARVRAILR 120
Query: 153 R 153
R
Sbjct: 121 R 121
>TIGR_CMR|SO_4428 [details] [associations]
symbol:SO_4428 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K02483
HSSP:P06143 RefSeq:NP_719949.1 ProteinModelPortal:Q8E961
GeneID:1172025 KEGG:son:SO_4428 PATRIC:23528509 OMA:PNQVISR
ProtClustDB:CLSK907640 Uniprot:Q8E961
Length = 225
Score = 114 (45.2 bits), Expect = 0.00048, P = 0.00048
Identities = 39/155 (25%), Positives = 69/155 (44%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+++LLVE D +T + + + + DG + +L+ DL++ + LP +
Sbjct: 1 MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQG--LLQATSGQYDLLILDRMLPQLD 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G LL + PV+++S+ V K + G DY+ KP +EL + +
Sbjct: 59 GLKLLAAL--RATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLM 116
Query: 152 RR-QSSMVSGNETQDESVGQQKIEATSENDAASNH 185
+R QS+ + T D VG K+E + N H
Sbjct: 117 QRGQSTPI----TTDLVVGGLKMELLTRNVTLDGH 147
>TIGR_CMR|BA_5068 [details] [associations]
symbol:BA_5068 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0
RefSeq:NP_847259.1 RefSeq:YP_021717.1 RefSeq:YP_030951.1
ProteinModelPortal:Q81KD2 DNASU:1084352
EnsemblBacteria:EBBACT00000008736 EnsemblBacteria:EBBACT00000013851
EnsemblBacteria:EBBACT00000021438 GeneID:1084352 GeneID:2816207
GeneID:2851510 KEGG:ban:BA_5068 KEGG:bar:GBAA_5068 KEGG:bat:BAS4707
OMA:FMKNQGI ProtClustDB:CLSK917509
BioCyc:BANT260799:GJAJ-4761-MONOMER
BioCyc:BANT261594:GJ7F-4923-MONOMER Uniprot:Q81KD2
Length = 229
Score = 114 (45.2 bits), Expect = 0.00051, P = 0.00051
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA +L+VE +D R+I+ Y V DG +A V + +DL++ ++ LP
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFE--EEEVDLVILDIMLPE 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKP 137
+ G+++ + + +P+IM++++ D T+ + GA DY+ KP
Sbjct: 59 LDGWSVCRRIRK---TSEVPIIMLTARVDEDDTLLGFEL-GADDYVTKP 103
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 33 RVLLVEADDSTR--QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
R+ ++ ADD ++ L K Y V DG +A +++ +P IDL++ ++ +P +
Sbjct: 3 RISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQP--IDLVVLDIMMPKM 60
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G+ + + ++P+I +S++ S ++ GA DY+ KP EL
Sbjct: 61 DGYEVTRQIRAKH---HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIEL 110
>TIGR_CMR|CPS_1208 [details] [associations]
symbol:CPS_1208 "phosphate regulon response regulator
PhoB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
[GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 eggNOG:COG0745 HOGENOM:HOG000034819
KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154 RefSeq:YP_267951.1
ProteinModelPortal:Q486R4 SMR:Q486R4 STRING:Q486R4 GeneID:3522949
KEGG:cps:CPS_1208 PATRIC:21465661
BioCyc:CPSY167879:GI48-1289-MONOMER Uniprot:Q486R4
Length = 233
Score = 114 (45.2 bits), Expect = 0.00053, P = 0.00053
Identities = 34/126 (26%), Positives = 64/126 (50%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ ++L+VE + R++++ +L ++ + D +A + K DLIL + LP
Sbjct: 1 MSRKILVVEDETPIREMISFVLDQNGFNAIEACDIEQA--LAKIHEPYPDLILLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+G +L + ++E +NIP+IM++++ K G D++ KP EL +
Sbjct: 59 GTGVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKA 118
Query: 150 VWRRQS 155
V RR S
Sbjct: 119 VIRRVS 124
>UNIPROTKB|Q0PBM2 [details] [associations]
symbol:cheA "Chemotaxis histidine kinase" species:192222
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560 SUPFAM:SSF50341
EMBL:AL111168 GenomeReviews:AL111168_GR OMA:CDHGIED
ProtClustDB:CLSK872488 PIR:B81447 RefSeq:YP_002343725.1
ProteinModelPortal:Q0PBM2 IntAct:Q0PBM2 GeneID:904608
KEGG:cje:Cj0284c PATRIC:20057487 HOGENOM:HOG000255264
BioCyc:CJEJ192222:GJTS-263-MONOMER Uniprot:Q0PBM2
Length = 769
Score = 122 (48.0 bits), Expect = 0.00057, P = 0.00057
Identities = 25/114 (21%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+V+ R ++ L + +G++A ++K +ID +L ++++P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ L + ++ +N+P+I ++S+ S + + + G +Y+ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>UNIPROTKB|Q5HWI3 [details] [associations]
symbol:cheA "Chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 122 (48.0 bits), Expect = 0.00057, P = 0.00057
Identities = 25/114 (21%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+V+ R ++ L + +G++A ++K +ID +L ++++P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ L + ++ +N+P+I ++S+ S + + + G +Y+ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CJE_0332 [details] [associations]
symbol:CJE_0332 "chemotaxis protein CheA" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
[GO:0016301 "kinase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR002545 InterPro:IPR003594 InterPro:IPR004105
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF01584 Pfam:PF01627 Pfam:PF02518 Pfam:PF02895
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894
SMART:SM00073 SMART:SM00260 SMART:SM00387 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 GO:GO:0016301 GO:GO:0004871
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K03407 Gene3D:1.10.287.560
SUPFAM:SSF50341 OMA:CDHGIED ProtClustDB:CLSK872488
HOGENOM:HOG000255264 RefSeq:YP_178352.1 ProteinModelPortal:Q5HWI3
STRING:Q5HWI3 GeneID:3231094 KEGG:cjr:CJE0332 PATRIC:20042366
BioCyc:CJEJ195099:GJC0-337-MONOMER Uniprot:Q5HWI3
Length = 769
Score = 122 (48.0 bits), Expect = 0.00057, P = 0.00057
Identities = 25/114 (21%), Positives = 59/114 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+V+ R ++ L + +G++A ++K +ID +L ++++P + G
Sbjct: 648 KVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEALNIIKSGEHDIDAMLIDIEMPRMDG 707
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ L + ++ +N+P+I ++S+ S + + + G +Y+ KP L N+
Sbjct: 708 YTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENV 761
>TIGR_CMR|CPS_2524 [details] [associations]
symbol:CPS_2524 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_269240.1 ProteinModelPortal:Q481M9 STRING:Q481M9
GeneID:3520591 KEGG:cps:CPS_2524 PATRIC:21468113 OMA:NIANYME
ProtClustDB:CLSK938208 BioCyc:CPSY167879:GI48-2587-MONOMER
Uniprot:Q481M9
Length = 240
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 36/166 (21%), Positives = 76/166 (45%)
Query: 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86
+ +L +L+VE S Q + + + + G + E+ + DL++ +++
Sbjct: 1 MNNQSLYILVVEDQQSIAQNIANYMEDKGHVLDFATQGDQGLEL--ALTNHYDLVILDLN 58
Query: 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
LP + G + + + + ++P+IM++++DS+ GA DYL KP EL
Sbjct: 59 LPVMDGLEVCKKLRK-QARHHVPIIMLTARDSIDDKISGFTLGADDYLTKPFSLEELEVR 117
Query: 147 WQHVWRRQSSMVSGNETQ--DE-SVGQQKIEATSENDAASNHSSGY 189
+ RR ++ N+T D+ + +++ + T H+ GY
Sbjct: 118 CFALSRRH--LLQTNDTLIFDQLCIDRKRQQVTRSGQNLELHTMGY 161
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 96 (38.9 bits), Expect = 0.00059, P = 0.00059
Identities = 29/121 (23%), Positives = 60/121 (49%)
Query: 32 LRVLLVEADDS--TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
+R LV DDS R++ + ++R + VT DG +A ++ R D IL + ++P+
Sbjct: 1 MRTCLV-VDDSRVVRKVASRIVRDLGFSVTEAGDGAEALKMC--RESMPDAILLDWNMPT 57
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
++G L + E K ++ S ++ + + + GA ++++KP + L + +
Sbjct: 58 MNGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFIMKPFDADILESKFAE 117
Query: 150 V 150
V
Sbjct: 118 V 118
>TIGR_CMR|SO_4003 [details] [associations]
symbol:SO_4003 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
HOGENOM:HOG000266481 KO:K07814 RefSeq:NP_719533.1
ProteinModelPortal:Q8EAA5 GeneID:1171631 KEGG:son:SO_4003
PATRIC:23527676 OMA:FVTAKTD ProtClustDB:CLSK577304 Uniprot:Q8EAA5
Length = 357
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+V+ QI+ LL Y + A G KA + P DLIL +V +P + GF
Sbjct: 10 VLVVDDSADNIQILHGLL-SDKYSIRAATSGAKALALAAIEPMP-DLILLDVMMPEMDGF 67
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
+ + + ++IP+I ++++ + GA DY+ KPV+
Sbjct: 68 QTCIRLKHNPLTRHIPIIFVTAKTDIVDERTGFELGAVDYISKPVK 113
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 113 (44.8 bits), Expect = 0.00065, P = 0.00065
Identities = 28/110 (25%), Positives = 58/110 (52%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+V+ D R++V+ L ++ DGL A + K +D+++ ++ +P++ GF
Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQ--KINQVKVDMVILDIMMPNMDGF 65
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ + ++ +IP+++++++ S K G DYLVKP EL
Sbjct: 66 DVCFELRKYY---DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIEL 112
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 116 (45.9 bits), Expect = 0.00068, P = 0.00068
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 24 ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLIL 82
ET R +L+V+ + R ++ L+ + Y V +G +A E+ KG +++
Sbjct: 8 ETRAPRFPFPILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFNKGY---YPIVM 64
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
T+ +P + G L + + +I+++SQDS + V + GA +YLVKP + E
Sbjct: 65 TDWVMPEMDGLELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAHQVE 124
Query: 143 L 143
L
Sbjct: 125 L 125
>CGD|CAL0003344 [details] [associations]
symbol:SLN1 species:5476 "Candida albicans" [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0004673 "protein histidine kinase activity" evidence=ISS;IDA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0046777
"protein autophosphorylation" evidence=IEA] [GO:0018106
"peptidyl-histidine phosphorylation" evidence=IEA] [GO:0006469
"negative regulation of protein kinase activity" evidence=IEA]
[GO:0005034 "osmosensor activity" evidence=IEA] [GO:0009927
"histidine phosphotransfer kinase activity" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 124 (48.7 bits), Expect = 0.00069, P = 0.00069
Identities = 27/119 (22%), Positives = 63/119 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKG---RPRNIDLILTEVDL 87
LRVL+ E + +++++ +L++ +T +G KA + +K N DLI +V +
Sbjct: 1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESIENNENFDLIFMDVQM 1303
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
P + G ++ ++ + N P+I +++ S V +C+ G + ++ KP+ + ++ +
Sbjct: 1304 PEVDGLKATKMIRKN-LQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361
>UNIPROTKB|Q5A872 [details] [associations]
symbol:SLN1 "Potential response regulator protein"
species:237561 "Candida albicans SC5314" [GO:0004673 "protein
histidine kinase activity" evidence=ISS;IDA] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 124 (48.7 bits), Expect = 0.00069, P = 0.00069
Identities = 27/119 (22%), Positives = 63/119 (52%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKG---RPRNIDLILTEVDL 87
LRVL+ E + +++++ +L++ +T +G KA + +K N DLI +V +
Sbjct: 1244 LRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFVKESIENNENFDLIFMDVQM 1303
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
P + G ++ ++ + N P+I +++ S V +C+ G + ++ KP+ + ++ +
Sbjct: 1304 PEVDGLKATKMIRKN-LQYNKPIIALTAFADESNVKECLNSGMSGFITKPISKTNIKKV 1361
>ASPGD|ASPL0000043398 [details] [associations]
symbol:AN9048 species:162425 "Emericella nidulans"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00065 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:BN001307
GO:GO:0005622 GO:GO:0023014 EMBL:AACD01000168 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 RefSeq:XP_682317.1
ProteinModelPortal:Q5ARN2 EnsemblFungi:CADANIAT00007805
GeneID:2868194 KEGG:ani:AN9048.2 HOGENOM:HOG000178140 OMA:EVPIYSP
OrthoDB:EOG415KNG Uniprot:Q5ARN2
Length = 1109
Score = 123 (48.4 bits), Expect = 0.00069, P = 0.00069
Identities = 28/117 (23%), Positives = 60/117 (51%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+V+ ++ +++ L+ K Y+ T +GL A+ K P + ++L ++ +P + G
Sbjct: 988 KVLIVDDNEINLKVLARLMSKLGYQHTTATNGLVAFTKYKESPNSFSMVLMDISMPVMDG 1047
Query: 93 FALLTLVMEHEICK---NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+ +E K ++ V ++ S + ++ +M G +YLVKP+ +L L
Sbjct: 1048 IDATRNIRSYEWEKQLSSVKVFAVTGIGSAAMQHEALMAGVDEYLVKPLSLGQLGKL 1104
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 113 (44.8 bits), Expect = 0.00070, P = 0.00070
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+V+ + ++V+ LR + +T DG A + R + D+++ +V LP +SG
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSA--IAAARRQRPDVVVLDVMLPDMSGL 68
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+L + +PV++++++D+V + G DY+ KP E+
Sbjct: 69 DVLHKLRSEN--PGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEV 116
>TIGR_CMR|GSU_0700 [details] [associations]
symbol:GSU_0700 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001789
InterPro:IPR001932 InterPro:IPR013655 Pfam:PF00072 Pfam:PF07228
Pfam:PF08447 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
SMART:SM00091 SMART:SM00331 SMART:SM00448 InterPro:IPR001610
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 SUPFAM:SSF81606 KO:K07315 RefSeq:NP_951757.1
ProteinModelPortal:Q74FA9 GeneID:2687437 KEGG:gsu:GSU0700
PATRIC:22024159 HOGENOM:HOG000275853 OMA:CAPIGLL
ProtClustDB:CLSK827999 BioCyc:GSUL243231:GH27-633-MONOMER
Uniprot:Q74FA9
Length = 637
Score = 120 (47.3 bits), Expect = 0.00073, P = 0.00073
Identities = 36/105 (34%), Positives = 50/105 (47%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
LRVL++E + +V LRK Y V A V R+ DL L++ LP S
Sbjct: 5 LRVLIIEDSEDDMLLVLRELRKGGYEPDHVRVETAAEMVAAMAARDWDLALSDYVLPRFS 64
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136
G L L E E +++P I++S + T M GA DYL+K
Sbjct: 65 GMDALRLWRERE--EDLPFIVVSGKIGEETAVAAMKAGANDYLIK 107
>TIGR_CMR|SO_0860 [details] [associations]
symbol:SO_0860 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 OMA:CELIYNA KO:K07814
HSSP:P06628 RefSeq:NP_716491.2 ProteinModelPortal:Q8EIH9
GeneID:1168707 KEGG:son:SO_0860 PATRIC:23521381
ProtClustDB:CLSK905977 Uniprot:Q8EIH9
Length = 338
Score = 116 (45.9 bits), Expect = 0.00075, P = 0.00075
Identities = 32/106 (30%), Positives = 56/106 (52%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSISG 92
+L+V+ I+ +L + Y+V DG +A V K P DLIL +V +P ++G
Sbjct: 6 ILVVDDTPENIDILVGILGED-YKVKVAIDGPRALALVTKTLP---DLILLDVMMPGMNG 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+ + L+ + + +IPVI +++ V+ + GA DY+ KPV
Sbjct: 62 YEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPV 107
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 95 (38.5 bits), Expect = 0.00075, P = 0.00075
Identities = 32/116 (27%), Positives = 57/116 (49%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKG-RPRNIDLILTEVDL 87
MA RVL+V+ R ++ + + V +GL+A E K +P DL ++ +
Sbjct: 1 MAKRVLVVDDAIFMRNMIKDIFASGGFEVVGEAANGLEAVEKYKELKP---DLTTMDIVM 57
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
P SG +++ + + VIM S+ S V + + GA+D++VKP R ++
Sbjct: 58 PFKSGIEATREIIKAD--SSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDV 111
>UNIPROTKB|Q0C0N5 [details] [associations]
symbol:ntrX "Sigma-54 dependent DNA-binding response
regulator" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000158
GenomeReviews:CP000158_GR RefSeq:YP_760708.1
ProteinModelPortal:Q0C0N5 STRING:Q0C0N5 GeneID:4288435
KEGG:hne:HNE_2009 PATRIC:32216861 KO:K13599 OMA:NVIPFFV
ProtClustDB:CLSK862979 BioCyc:HNEP228405:GI69-2033-MONOMER
Uniprot:Q0C0N5
Length = 461
Score = 118 (46.6 bits), Expect = 0.00077, P = 0.00077
Identities = 34/116 (29%), Positives = 61/116 (52%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR-PRNIDLILTEVDLP 88
MAL +L+V+ + R+++ +L Y V +A E ++ R PR L++ +V L
Sbjct: 1 MALDILVVDDEPDIRELMAGVLGDEGYAVRTADTAERALEEVRSRTPR---LVILDVWLQ 57
Query: 89 SISGFALLTLVME-HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
SG L+L+ I +PVI++S ++ T + RGA D++ KP++ + L
Sbjct: 58 G-SGMDGLSLLKYLKSIDPILPVIVISGHGNIETAIAAIRRGAFDFIEKPIKADRL 112
>ASPGD|ASPL0000039187 [details] [associations]
symbol:phkB species:162425 "Emericella nidulans"
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0031098 "stress-activated protein kinase
signaling cascade" evidence=IEA] [GO:0051286 "cell tip"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032153 "cell
division site" evidence=IEA] [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IEA] [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA] [GO:0016310 "phosphorylation"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
EMBL:BN001306 GO:GO:0005622 EMBL:AACD01000051 GO:GO:0023014
eggNOG:COG2202 SMART:SM00086 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
OrthoDB:EOG45XC45 RefSeq:XP_660705.1 ProteinModelPortal:Q5B8M9
EnsemblFungi:CADANIAT00009977 GeneID:2874078 KEGG:ani:AN3101.2
HOGENOM:HOG000198556 OMA:ENVPWGQ Uniprot:Q5B8M9
Length = 1879
Score = 125 (49.1 bits), Expect = 0.00077, P = 0.00077
Identities = 36/144 (25%), Positives = 67/144 (46%)
Query: 7 NDEELKEMNGN-EGIAKW-ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG 64
N + + +N N + ++K + + RVLLVE D++ R ++ L K DG
Sbjct: 1705 NQDMARAINNNFKTMSKMVKEVIGNKGYRVLLVEDDETNRMVMMKYLDKIKVMAETAGDG 1764
Query: 65 LKAWE-VLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN----IPVIMMSSQDSV 119
+ + V P LI+ ++ +P +G+ + + E+ KN IP++ +S+
Sbjct: 1765 QQCTDMVFSKEPGYYSLIICDIQMPIKNGYETCREIRKWEM-KNHYPQIPIMALSANAMT 1823
Query: 120 STVYKCMMRGAADYLVKPVRRNEL 143
+ G DY+ KP++ NEL
Sbjct: 1824 DQIEDAARAGFNDYVTKPIKHNEL 1847
WARNING: HSPs involving 13 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.126 0.358 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 527 527 0.00091 119 3 11 23 0.45 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 263
No. of states in DFA: 617 (66 KB)
Total size of DFA: 305 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.31u 0.12s 53.43t Elapsed: 00:00:03
Total cpu time: 53.34u 0.12s 53.46t Elapsed: 00:00:03
Start: Sat May 11 00:06:16 2013 End: Sat May 11 00:06:19 2013
WARNINGS ISSUED: 2