BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009734
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSISG 92
+L+V+ DD+ + + +LR + Y V G +A + + K P D ++ +V LP I G
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLP---DALICDVLLPGIDG 63
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ L V +H + K +P++ +++Q +S GA DYL KP EL
Sbjct: 64 YTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQEL 114
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 2/128 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VEA+ R++V +L ++ ++ D A L P DLIL E LP
Sbjct: 1 MARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLEWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 150 VWRRQSSM 157
V RR S M
Sbjct: 119 VMRRISPM 126
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
+++L+V+ + R+IV LLR + T DGL A +LK + D ++T+ ++P +
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
G LL + E K++PV+M++++ + + G Y+VKP L+ +
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130
Query: 151 WRR 153
+ R
Sbjct: 131 FER 133
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 4/126 (3%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M +RVL+VE + ++T L+K + V DG + + P D+++ ++ LP
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPV 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
G+ +L + E + N PV+M+++ V K + GA DYL KP EL +
Sbjct: 59 HDGWEILKSMRESGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRA 116
Query: 150 VWRRQS 155
+ RR+S
Sbjct: 117 LIRRKS 122
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86
+ +++ +L+++ D+ R+ + A L S+++V +GL+ ++ + DL++ ++
Sbjct: 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLR 58
Query: 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
P I G L+ + + P+I++S +S + + GAADYL+KP+ E +
Sbjct: 59 XPQIDGLELIRRI--RQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKPL---EDLAV 113
Query: 147 WQHVWRR 153
+H RR
Sbjct: 114 LEHSVRR 120
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VE + R++V +L ++ ++ D A L P DLIL + LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 150 VWRRQSSM 157
V RR S M
Sbjct: 119 VMRRISPM 126
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEV 85
+ M R+L+V+ D S +++T +LR + + DG +A ++ RP DL+L ++
Sbjct: 1 MDTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP---DLVLLDL 57
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
LP ++G + ++ +P++M++++ V + GA DY++KP + E
Sbjct: 58 MLPGMNGIDVCRVLRADS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
++++L+V+ + R+I+ L + Y V G++AWE L + +++T+ ++P
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPE 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
++G L+ V K IP+IM++++ + V + G +Y+VKP
Sbjct: 64 MNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
++++L+V+ + R+I+ L + Y V G++AWE L + +++T+ ++P
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPE 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
++G L+ V K IP+IM++++ + V + G +Y+VKP
Sbjct: 64 MNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA VL+VE ++S + LLRK + T V DG A D++L ++ LP
Sbjct: 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD--RAGADIVLLDLMLPG 60
Query: 90 ISGFALLTLVMEHEICK------NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+SG ++CK ++PVIM++++DS + GA DY+ KP EL
Sbjct: 61 MSG---------TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREL 111
Query: 144 RNLWQHVWRR 153
+ V RR
Sbjct: 112 IARIRAVLRR 121
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+++ D+ R+ + A L S+++V +GL+ ++ + DL++ ++ P I G
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRXPQIDGL 65
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
L+ + + P+I++S S + + GAADYL+KP+ E + +H RR
Sbjct: 66 ELIRRI--RQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKPL---EDLAVLEHSVRR 120
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
++++L+V+ + R+I+ L + Y V G++AWE L + +++T ++P
Sbjct: 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITAWNMPE 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
++G L+ V K IP+IM++++ + V + G +Y+VKP
Sbjct: 64 MNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VE + R++V +L ++ ++ D A L P DLIL + LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLDWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA DY+ KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKA 118
Query: 150 VWRRQS 155
V RR S
Sbjct: 119 VMRRIS 124
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP 88
+ VL+V+ T + +T + + + DG +A K NID++ + +P
Sbjct: 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP 94
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G L+ +ME + KN VIM+S+ V C+++GA ++VKP+ R ++
Sbjct: 95 KMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKV 147
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVDLP 88
M+ R+L+V+ ++ +++ A L Y V+ DG A + R++ D+IL +V +P
Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA---RDLPDIILLDVMMP 57
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+ GF + + + ++IPV+++++ D + + GA+D+L KP+
Sbjct: 58 GMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 20 IAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNID 79
IA L + RVL+V+ ++ Q V A L +R D KA ++ G P +D
Sbjct: 142 IAGAAARLDGLGGRVLIVDDNERQAQRVAAEL-GVEHRPVIESDPEKA-KISAGGP--VD 197
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
L++ + G + E + +PV+ M D + K + G D L +P+
Sbjct: 198 LVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPID 257
Query: 140 RNEL 143
EL
Sbjct: 258 PQEL 261
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ +VLLV+ R+IV+ L+K Y V +G A E L DLI+ ++ +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLDIMMPV 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF +L + E E K IPVI+++++ + GA + KP
Sbjct: 59 MDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M+ +VLLV+ R+IV+ L+K Y V +G A E L DLI+ + +P
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS--EFTPDLIVLXIMMPV 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+ GF +L + E E K IPVI+++++ + GA + KP
Sbjct: 59 MDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 11/137 (8%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L++E D ++ L + Y V ++K R + DLIL ++ LP G
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNG--LIKAREDHPDLILLDLGLPDFDG 96
Query: 93 FALLTLVMEHEICKN--IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL--RNLWQ 148
++ + KN +P+I+++++D+V + + GA DYL+KP +EL R Q
Sbjct: 97 GDVV-----QRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQ 151
Query: 149 HVWRRQSSMVSGNETQD 165
R S+ G+ T D
Sbjct: 152 LRQRTSESLSXGDLTLD 168
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 19/135 (14%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP 88
M ++L+V+ + I+ LRK Y V DG +A E+++ +P DLIL ++ LP
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP---DLILLDIMLP 57
Query: 89 SISGFALLTLVMEHEICK------NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
+ G E+C+ ++P+IM++++DS + GA DY+ KP E
Sbjct: 58 NKDGV---------EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRE 108
Query: 143 LRNLWQHVWRRQSSM 157
L + RRQ ++
Sbjct: 109 LLARVKANLRRQLTL 123
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VE + R++V +L ++ ++ D A L P DLIL LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLAWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA D + KP EL +
Sbjct: 59 GSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKA 118
Query: 150 VWRRQSSM 157
V RR S M
Sbjct: 119 VMRRISPM 126
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
MA R+L+VE + R++V +L ++ ++ D A L P DLIL LP
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLN-EPWP-DLILLAWMLPG 58
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
SG + + + ++IPV+M++++ + + GA D + KP EL +
Sbjct: 59 GSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKA 118
Query: 150 VWRRQSSM 157
V RR S M
Sbjct: 119 VMRRISPM 126
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 59 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVDLPSIS 91
R+L+V+ ++ +++ A L Y V+ DG A + R++ D+IL +V +P +
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA---RDLPDIILLDVMMPGMD 59
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
GF + + + ++IPV+++++ D + + GA+D+L KP+
Sbjct: 60 GFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 20 IAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNID 79
IA L + RVL+V+ ++ Q V A L +R D KA ++ G P +D
Sbjct: 141 IAGAAARLDGLGGRVLIVDDNERQAQRVAAEL-GVEHRPVIESDPEKA-KISAGGP--VD 196
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
L++ + G + E + +PV+ M D + K + G D L +P+
Sbjct: 197 LVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPID 256
Query: 140 RNEL 143
EL
Sbjct: 257 PQEL 260
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 19/132 (14%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP 88
M ++L+V+ + I+ LRK Y V DG +A E+++ +P DLIL ++ LP
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP---DLILLDIMLP 57
Query: 89 SISGFALLTLVMEHEICK------NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
+ G E+C+ ++P+IM++++DS + GA DY+ KP E
Sbjct: 58 NKDGV---------EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRE 108
Query: 143 LRNLWQHVWRRQ 154
L + RRQ
Sbjct: 109 LLARVKANLRRQ 120
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSIS 91
++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P +
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIPGMD 59
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 60 GIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKS--SYRVTAVPDGLKAWEVLKGRPRN-------IDL 80
+++ ++ +E D +++ +R++ + + A DG A L G ++ L
Sbjct: 3 LSVTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQL 62
Query: 81 ILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR 140
+L +++LP +G +L LV E+ + PV+++++ D + +C GA Y+ KPV
Sbjct: 63 VLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNY 122
Query: 141 NELRN 145
N
Sbjct: 123 ENFAN 127
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89
M ++L+V+ ++S ++ L +S Y V DG +A + K DLI+ +V LP
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--KAETEKPDLIVLDVMLPK 59
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+ G + + + ++ P++M++++D + GA DY+ KP E+ +
Sbjct: 60 LDGIEVCKQLRQQKLM--FPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKA 117
Query: 150 VWRRQSSMVSGNETQDESV 168
+ RR +E +++ +
Sbjct: 118 ILRRSEIRAPSSEMKNDEM 136
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L + +P
Sbjct: 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLXMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 59 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 59 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 4 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 60
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 61 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+VE + R ++ + DG+ A E+L G DL++ ++ +P ++G
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNG 66
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR-NELRNL 146
LL + PV+++S+ ++++ + K + G D L+KPV+ N LR +
Sbjct: 67 LKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ D+P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+++Q + GA+ Y+VKP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKP 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ + I+ + K Y V +G +A E + D+I+ ++ LP I G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ + + ++P++M+S++DS + GA DY+ KP EL+ + + R
Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 153 R 153
R
Sbjct: 118 R 118
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 51 LRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109
LR S + V DG +A + RP D I+ ++++P + G +++T + + ++P
Sbjct: 27 LRLSGFEVATAVDGAEALRSATENRP---DAIVLDINMPVLDGVSVVTALRAMD--NDVP 81
Query: 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156
V ++S++ SV + GA DYLVKP EL + + RR+ S
Sbjct: 82 VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGS 128
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+RVL+VE + ++T L+K + V DG + P D+++ ++ LP
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP--FDVVILDIXLPVHD 60
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151
G+ +L E + N PV+ +++ V K + GA DYL KP EL + +
Sbjct: 61 GWEILKSXRESGV--NTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALI 118
Query: 152 RRQS-----SMVSGNETQDESV-----GQQKIEATSE 178
RR+S +V G+ D + G ++I+ T +
Sbjct: 119 RRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKK 155
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK-GRPRNIDLILTEVDLPSISG 92
+L+VE + + + +L ++ Y+ V +G +A L RP DLI+++V +P + G
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP---DLIISDVLMPEMDG 66
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+AL + + IPVI+++ V + + GA D++ KP + L + HV R
Sbjct: 67 YALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLAS---HVKR 123
Query: 153 RQSSMVSGNETQDESVGQQKIEATSENDA 181
++SG + +E ++ I N+
Sbjct: 124 ----LLSGVKRTEERYSRESITLAFGNEG 148
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + GA + KP +E+R+
Sbjct: 59 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+A + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 61
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G +L + I +NI VI+M++ + + + GA KP +E+R+
Sbjct: 59 GMDGIEILKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+V+ + I+ + K Y V +G +A E + D+I+ + LP I G
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILXLMLPEIDG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ + + ++P++M+S++DS + GA DY+ KP EL+ + + R
Sbjct: 61 LEVAKTIRK---TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117
Query: 153 R 153
R
Sbjct: 118 R 118
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D S R ++ L + T +G + L + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
ALL + + +PVI+M++ + +GA DYL KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D S R ++ L + T +G + L + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
ALL + + +PVI+M++ + +GA DYL KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D S R ++ L + T +G + L + D++L+++ +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
ALL + + +PVI+M++ + +GA DYL KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ I+++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ D+P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKP 113
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ I+++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 6/117 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLP 88
M ++L+V+ R ++ + K Y+ +GL+A +++ K RP DL+L ++ +P
Sbjct: 2 MNEKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP---DLVLLDMKIP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRN 145
+ G + + I +NI VI+M++ + + + GA + KP +E+R+
Sbjct: 59 GMDGIEIAKRM--KVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ D+P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 113
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSIS 91
RVLLVE S + ++ Y + V G A + + + +P+ LI+ ++ LP +S
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQ---LIILDLKLPDMS 62
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G +L + +++I + VI+ ++ SV + +GA D+L KP+ + L+
Sbjct: 63 GEDVLDWINQNDIPTS--VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLK 113
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ I+ + ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIICDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D S R ++ L + T +G + L + D++L+ + +P + G
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSXIRMPGMDGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
ALL + + +PVI+M++ + +GA DYL KP +E
Sbjct: 64 ALLKQIKQRH--PMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++S+ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+VE ++ ++ LL Y +GL A + R DLIL ++ LP ISG
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI--ARENKPDLILMDIQLPEISG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+ + E + +IPV+ +++ + G Y+ KP+
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M +++ + GA+ Y+VKP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ D+P++
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+++ + GA+ Y+VKP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 113
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
++R+L+ + ++ R ++ LL K+ ++V V + + + + D ++ ++ +P +
Sbjct: 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA--EEDYDAVIVDLHMPGM 71
Query: 91 SGFALLTL--VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
+G +L VM+ + PV+++S+ + + C GA +L KPV
Sbjct: 72 NGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Query: 31 ALRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLK---GRPRNIDLILTEVD 86
++++L+VE + ++++ +L + + DG +A++ +K + N ++I +V
Sbjct: 1 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 60
Query: 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+P + G L T ++ ++ P++ +++ S + +C+ G +L KP++R +L+ +
Sbjct: 61 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLK---GRPRNIDLILTEVD 86
++++L+VE + ++++ +L + DG +A++ +K + N ++I +V
Sbjct: 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQ 61
Query: 87 LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
+P + G L T ++ ++ P++ +++ S + +C+ G +L KP++R +L+ +
Sbjct: 62 MPKVDGL-LSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ V GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKP 110
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+IV LL++ + V DG+ A L+ ++++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKP 110
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + TR + ++ Y V DG + ++L +I+L++ +++LP +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS--EYDINLVIMDINLPGKNGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL----RNL 146
L + E N+ ++ ++ +D+ + GA DY+ KP EL RNL
Sbjct: 64 LLARELREQ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+I LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+IV LL++ + V DG+ A L+ ++++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 30 MALRVLLVEADDST-RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88
M+L +LV D+ST Q + LL V + + +ID+++T++ +P
Sbjct: 1 MSLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMP 60
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+SG +L + +I ++ VI+++ + M GA +YL KPV +L
Sbjct: 61 KLSGMDILREI--KKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 64
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.0 bits (97), Expect = 9e-04, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 35 LLVEADDST-RQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
LV AD ST R+IV LL++ + V DG+ A L+ ++++ ++P++ G
Sbjct: 9 FLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDG 66
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 67 LELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLP 88
M+ ++L+VE+D + + + L + V DG + E + + RP DL++ VDL
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 89 S-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ +G+ + + + + KN+P++++ + D + ++ + A +Y+ KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-FRKLKAHADEYVAKPVDADQL 115
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ VL++E D R ++ L +V + G +A+++L ++ +++L + LP ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--EKHFNVVLLXLLLPDVN 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +L + E VI+++ ++ T + M GA D+L KP E+
Sbjct: 59 GLEILKWIKERS--PETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ +P++
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWKMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ +++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ +++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++ + + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++ + + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKP 110
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ +P++
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 63
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+VE + TR + ++ Y V DG + ++L +I+L++ +++LP +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS--EYDINLVIXDINLPGKNGL 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL----RNL 146
L + E N+ + ++ +D+ + GA DY+ KP EL RNL
Sbjct: 64 LLARELREQ---ANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNL 117
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ +++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISAWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + + R+IV LL++ + V DG+ A L+ ++++ +P++
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
+IL +++LP G +L + + E+ K IPV++M++ + + C + Y+VKP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 140 RNEL 143
+ L
Sbjct: 125 IDRL 128
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+ ++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLP 88
M+ ++L+VE+D + + + L + V DG + E + + RP DL++ VDL
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 89 S-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ +G+ + + + + KN+P++++ + D + ++ + A +Y+ KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEYVAKPVDADQL 115
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
VL+VE + + R+ + L RV + +L+ R DLI+ ++ LP G
Sbjct: 4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRG--LLEAATRKPDLIILDLGLPDGDG- 60
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
+ + + +PVI++S++ S + GA DYL KP EL+ + RR
Sbjct: 61 --IEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118
Query: 154 QS 155
S
Sbjct: 119 HS 120
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D S R+ + LLR + + V E RP ++ ++ +P +SG
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLE--HRRPEQHGCLVLDMRMPGMSGI 64
Query: 94 AL---LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150
L LT I IP++ +++ + + M GA ++L KP L + +
Sbjct: 65 ELQEQLT-----AISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQG 119
Query: 151 WRRQSSMVSGNETQDE 166
+ + ETQD+
Sbjct: 120 LQLNAERRQARETQDQ 135
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ ++VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP 88
M RVL+V+ R ++ ++ K+ Y V +G +A E K + D++ ++ +P
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE--KYKELKPDIVTMDITMP 58
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
++G + +M+ I N +I+ S+ + V + + GA D++VKP +
Sbjct: 59 EMNGIDAIKEIMK--IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ +++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+ ++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEV-LKGRPRNIDLILTEVDLPSIS 91
R++LV+ + L + + + + ++A V +K P LI+TE ++P IS
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPH---LIITEANMPKIS 66
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138
G L + ++ +IPVI +S + + + + G D++ KPV
Sbjct: 67 GMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
RVL+V+ + + ++++ L+ + V +G +A + + R D ++ +V P G
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD--RARETRPDAVILDVXXPGXDG 82
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
F +L + I + P + ++++DS+ + G DY+ KP E+ + + R
Sbjct: 83 FGVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140
Query: 153 R 153
R
Sbjct: 141 R 141
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+ ++ + GA+ ++VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
RVL+V+ R ++ ++ K+ Y V +G +A E K + D++ ++ +P ++
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE--KYKELKPDIVTMDITMPEMN 60
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR 139
G + +M+ I N +I+ S+ + V + + GA D++VKP +
Sbjct: 61 GIDAIKEIMK--IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 32 LRVLLVEADDSTRQIVTALL-RKSSYRVTA-VPDGLKAWE-VLKGRPRNIDLILTEVDLP 88
+RVL+V+ R ++ ++ + +V DGL+A E ++ +P D+I ++++P
Sbjct: 26 IRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELKP---DVITMDIEMP 82
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKP 137
+++G L L+M+ + VIM+SS ++ + + + GA D++ KP
Sbjct: 83 NLNGIEALKLIMKKAPTR---VIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ VL+V+ ++R A LRK +V +A L+ P I L+L + P I
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYXPEID 183
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
G +L+ + E + + +I +S D + + +GA D+L +P EL+
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
Query: 33 RVLLVEADDST---RQIVTALLRKSSYRVTA-VPDGLKAWEVLKGR-PRNIDLILTEVDL 87
+V +V DD +V AL S V DG A E++K P D+ L + +
Sbjct: 15 KVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP---DVALLDYRM 71
Query: 88 PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
P + G + V +E+ V+++S+ D + VY+ + +GAA +L+K R E+
Sbjct: 72 PGMDGAQVAAAVRSYELPTR--VLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEI 125
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136
+IL ++ +P + G LL + ++IP+I++S+++ + GA DYLVK
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVK 122
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+++VE + T+ + + + Y V+ G E+ + + ++DLIL +++LP +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIXQNQ--SVDLILLDINLPDENGL 62
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL----RNLWQH 149
L + E + +I+++ + + GA DY+ KP+ EL +NL
Sbjct: 63 XLTRALRERS---TVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELRELVVRVKNL--- 116
Query: 150 VWR 152
+WR
Sbjct: 117 LWR 119
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ +++ ++P++
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M+ ++ + GA+ ++VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 2/126 (1%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+L+V+ + L + YR G + E L P DL+L ++ G+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEALNATPP--DLVLLDIXXEPXDGW 63
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153
L + ++IPV+ ++++ DY++KP ++L +HV R
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 154 QSSMVS 159
+ S+ +
Sbjct: 124 RHSIAA 129
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+++ D +R + L S Y V + +A E + + DL++ + D+ +
Sbjct: 5 KILIIDQQDFSRIELKNFL-DSEYLVIESKNEKEALEQIDHH--HPDLVILDXDIIGENS 61
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
L + + KN+P+I++ S + + + GA DYL KP RN+L
Sbjct: 62 PNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWE-VLKGRPRNIDLILTEVDLP 88
M+ ++L+VE+D + + + L + V DG + E + + RP DL++ VDL
Sbjct: 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRP---DLVVLAVDLS 60
Query: 89 S-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ +G+ + + + + KN+P++++ + D + ++ + A + + KPV ++L
Sbjct: 61 AGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEAVAKPVDADQL 115
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI--DLILTEVDLPSI 90
RVL+V+ ++S ++A+L + Y PD K + + + + +I+ +V +P
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYH----PDTAKTLREAEKKIKELFFPVIVLDVWMPDG 58
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G + + E+ + VI+++ SV T K + +GA ++L KP
Sbjct: 59 DGVNFIDFIKENS--PDSVVIVITGHGSVDTAVKAIKKGAYEFLEKP 103
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V + + V LL++ + V DG+ A L+ ++++ ++P++
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+M++++ + GA+ Y+VKP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
RVL+VE + R + ++ + ++V D +A L +I ++ ++ LP G
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIV--DLGLPDEDG 59
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+L+ +++ ++P++++++++S + + GA DY+ KP E+ Q + R
Sbjct: 60 LSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXR 117
Query: 153 RQS 155
R S
Sbjct: 118 RNS 120
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 36.6 bits (83), Expect = 0.033, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVDLPS 89
A V L++ D R+ + L + + V++ A E L G + ++++++ +P
Sbjct: 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFA---SATEALAGLSADFAGIVISDIRMPG 59
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G AL ++ + ++P+I+++ + + + GA D++ KP + L
Sbjct: 60 MDGLALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVDLPS 89
A V L++ D R+ + L + + V++ A E L G + ++++++ +P
Sbjct: 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFA---SATEALAGLSADFAGIVISDIRMPG 59
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G AL ++ + ++P+I+++ + + + GA D++ KP + L
Sbjct: 60 MDGLALFRKILALD--PDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
+VL+VE + R+ + LL + T DG + P D+++++V+ G
Sbjct: 6 KVLIVENSWTXRETLRLLL-SGEFDCTTAADGASGLQQALAHPP--DVLISDVNXDGXDG 62
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD------YLVKPVR 139
+AL K+IPVI +S Y G AD YLVKPV+
Sbjct: 63 YALCGHFRSEPTLKHIPVIFVSG-------YAPRTEGPADQPVPDAYLVKPVK 108
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90
L+ L+V+ + R+IV LL++ + V DG+ A L+ ++++ + P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNXPNX 62
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G LL + +PV+ ++++ + GA+ ++VKP
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136
+IL ++ +P + G L+ + + ++IP+I++S+++ GA DYLVK
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVK 120
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+++T++ +P +SG LL + + +I NIP I+++ V + M GA D++ KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 15/144 (10%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI--DLILTEVDLPSI 90
RVL+V+ ++S ++A+L + Y PD K + + + + +I+ +V P
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYH----PDTAKTLREAEKKIKELFFPVIVLDVWXPDG 57
Query: 91 SGFALLTLVMEHEICKNIP---VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147
G + + E N P VI+++ SV T K + +GA ++L KP
Sbjct: 58 DGVNFIDFIKE-----NSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTI 112
Query: 148 QHVWRRQSSMVSGNETQDESVGQQ 171
+H + S E + E VG+
Sbjct: 113 KHAFEEYSKKAPPQE-EIEFVGEH 135
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+LLV++ + Q + LL Y + D +A ++L R +DL+++ LP + G
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGP 74
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA-DYLVKPVRRNELRNLWQHVWR 152
LL + H+ + I+++ + + K + G YL KP EL +
Sbjct: 75 TLLARI--HQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALE 132
Query: 153 RQSSMVSGNETQDE 166
Q S QDE
Sbjct: 133 HQHSERERLRLQDE 146
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 34 VLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGR------PRNIDLILTEV 85
+LLVE + ++V +L+ S+ + + + DGL A L+ + PR +LIL ++
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYENSPRP-NLILLDL 69
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSS---QDSVSTVYKCMMRGAADYLVKPVRRNE 142
+LP G +L + ++ K IPV+++++ +D V Y+ + YL K RN
Sbjct: 70 NLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNC---YLTK--SRN- 123
Query: 143 LRNLWQHV 150
L++L++ V
Sbjct: 124 LKDLFKXV 131
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 18/128 (14%)
Query: 34 VLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGR------PRNIDLILTEV 85
+LLVE + ++V +L+ S+ + + + DGL A L+ + PR +LIL ++
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRP-NLILLDL 69
Query: 86 DLPSISGFALLTLVMEHEICKNIPVIMMSS---QDSVSTVYKCMMRGAADYLVKPVRRNE 142
+LP G +L + ++ K IPV+++++ +D V Y+ + YL K RN
Sbjct: 70 NLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNC---YLTK--SRN- 123
Query: 143 LRNLWQHV 150
L++L++ V
Sbjct: 124 LKDLFKMV 131
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
+++T + +P +SG LL + + +I NIP I+++ V + M GA D++ KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 33 RVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLK--------GRPRNIDLIL 82
++ LVE + + +++ L S+ + V V DG++A L+ RP DLIL
Sbjct: 4 KIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRP---DLIL 60
Query: 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115
++LP G +L + K IPV+++S+
Sbjct: 61 LXLNLPKKDGREVLAEIKSDPTLKRIPVVVLST 93
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++LLVE + + +++++ + + +G++A + + DL+L +V +P + G
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAINSS--SYDLVLMDVCMPVLDG 67
Query: 93 FALLTLVMEHE----------------------IC----KNIPVIMMSSQDSVSTVYKCM 126
L+ +E +C +P+I M++ + +C
Sbjct: 68 LKATRLIRSYEETGNWNAAIEAGVDISTSENEQVCMRPTNRLPIIAMTANTLAESSEECY 127
Query: 127 MRGAADYLVKPVRRNELRNLWQH 149
G ++ KPV +LR Q
Sbjct: 128 ANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88
+ + R+L+V+ D + + +L++ ++V +G A +K ++ ++ +P
Sbjct: 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAG--IKLSTFEPAIMTLDLSMP 61
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ G ++ + ++++ N P I++ S + + + + GA DYL KP + L
Sbjct: 62 KLDGLDVIRSLRQNKVA-NQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDAL 115
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 33 RVLLVEAD-DSTRQIVTALLRKSSY-RVTAVPDGLKA-WEVLKGRPRNIDLILTEVDLPS 89
RVL+VE + D I L RK + ++ V +G KA ++V + + DLI+ ++ LP
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK---YDLIILDIGLPI 63
Query: 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149
+GF + + V + ++ P+++++ S +C GA+ + K N + + +
Sbjct: 64 ANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGASSVVDK--SSNNVTDFYGR 121
Query: 150 VWRRQSSMVSGNETQD 165
++ S ++ N Q+
Sbjct: 122 IYAIFSYWLTVNHCQE 137
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLK-GRPRNIDLILTEVDLPSI 90
RVL+ E + R + +LR+ Y + DG +A E+ + +P DL++ +V +P
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP---DLVIMDVKMPRR 71
Query: 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
G + + I P++++++ V + GA YLVKP
Sbjct: 72 DGIDAASEIASKRIA---PIVVLTAFSQRDLVERARDAGAMAYLVKP 115
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
V +V+ D R V +L + + + + G + ++LK + +L ++ P G+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGV--VLLDIXXPGXDGW 67
Query: 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
+ ++++ + + I ++ ++++++ + DY+ KP +L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
+ VL++E D R ++ L +V + G +A+++L ++ +++L ++ LP ++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS--EKHFNVVLLDLLLPDVN 58
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNEL 143
G +L + E VI+++ ++ T + M GA D+L KP E+
Sbjct: 59 GLEILKWIKER--SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEI 108
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 32.0 bits (71), Expect = 0.97, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 77 NIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135
+I LI+ ++ P G +L+ + + N PVI+ + D+ + + +DY++
Sbjct: 50 SITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYIL 109
Query: 136 KPVRRNELRN 145
KP L N
Sbjct: 110 KPYPTKRLEN 119
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
++L+++ D Q + L + + + +A + K DLI E+ L G
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEA--IGKIFSNKYDLIFLEIILSDGDG 63
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152
+ L + C P++ + + ++ + G DYL+KP+ L + + R
Sbjct: 64 WTLCKKIRNVTTC---PIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120
Query: 153 RQSSMVS 159
R +S V+
Sbjct: 121 RXNSYVN 127
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93
+++V+ + V LL+ +V + + VL R N +++L +++ S
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVL--REENPEVVLLDMNFTSGINN 63
Query: 94 ALLTLVMEHEI---CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137
L HEI +++PV++ ++ + + + GA+D++VKP
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+V+ + + R+++ L++ Y + +G +A + K N DL++ ++++P ISG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+ + + + K+ +I++++ + A +Y+VK +EL+
Sbjct: 61 LEVAGEIRKKK--KDAKIILLTAYSHYRSDLSSW--AADEYVVKSFNFDELK 108
>pdb|3HDV|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
pdb|3HDV|D Chain D, Crystal Structure Of Response Regulator Receiver Protein
From Pseudomonas Putida
Length = 136
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEVDLP 88
+A R L++ DD+ +L S + AV DG + + + I L +T++
Sbjct: 4 VAARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLXITDLRXQ 63
Query: 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146
SG L+ + E + +I++S V G D+L+KPV +L L
Sbjct: 64 PESGLDLIRTIRASERAA-LSIIVVSGDTDVEEAVDVXHLGVVDFLLKPVDLGKLLEL 120
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 79 DLILTEVDLPSISGFALLTLV---MEHEICKNIP-VIMMSSQDSVSTVYKCMMRGAADYL 134
D++L ++ +P + G A+L + EH+ P VIM+++ K + GA+ ++
Sbjct: 50 DILLLDIIMPHLDGLAVLERIRAGFEHQ-----PNVIMLTAFGQEDVTKKAVELGASYFI 104
Query: 135 VKPVRRNELRNLWQHV 150
+KP ++ NL H+
Sbjct: 105 LKPF---DMENLAHHI 117
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+V+ D S + +T +LR + + DG +A + R DL+L ++ LP +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAV--RELRPDLVLLDLXLPGXNG 64
Query: 93 FALLTLVMEHEICK------NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142
++C+ +P++ ++++ V + GA DY+ KP + E
Sbjct: 65 I---------DVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|2I2X|B Chain B, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|D Chain D, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|F Chain F, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|H Chain H, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|J Chain J, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|L Chain L, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|N Chain N, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
pdb|2I2X|P Chain P, Crystal Structure Of Methanol:cobalamin Methyltransferase
Complex Mtabc From Methanosarcina Barkeri
Length = 258
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 41 DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95
D + IVTALLR + Y V + + A EVL + ++LT L + + +A
Sbjct: 137 DIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAF 191
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 79 DLILTEVDLPSISGFALLTLV---MEHEICKNIP-VIMMSSQDSVSTVYKCMMRGAADYL 134
D++L + +P + G A+L + EH+ P VIM+++ K + GA+ ++
Sbjct: 50 DILLLXIIMPHLDGLAVLERIRAGFEHQ-----PNVIMLTAFGQEDVTKKAVELGASYFI 104
Query: 135 VKPVRRNELRNLWQHV 150
+KP ++ NL H+
Sbjct: 105 LKPF---DMENLAHHI 117
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 34 VLLVEADDSTRQIVTALLRK-SSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS 91
V++V+ R + + ++ ++V A +G +A + L +P N+DLIL ++++P +
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMD 74
Query: 92 GFALLTLVMEHEICKNIPVIMMSSQDSVS 120
G L H K I M S +VS
Sbjct: 75 GMEFL----RHAKLKTRAKICMLSSVAVS 99
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92
R+L+V+ + + R+++ L++ Y + +G +A + K N DL++ +++ P ISG
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEXPGISG 60
Query: 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144
+ + + + K+ +I++++ + A +Y+VK +EL+
Sbjct: 61 LEVAGEIRKKK--KDAKIILLTAYSHYRSDXSSW--AADEYVVKSFNFDELK 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,734,175
Number of Sequences: 62578
Number of extensions: 565585
Number of successful extensions: 1361
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 160
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)