Query 009734
Match_columns 527
No_of_seqs 316 out of 1816
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:41:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 1.1E-21 2.4E-26 194.4 16.9 120 32-155 1-120 (229)
2 COG2204 AtoC Response regulato 99.8 5.9E-20 1.3E-24 197.0 16.8 121 30-154 3-123 (464)
3 COG4753 Response regulator con 99.8 4.1E-20 9E-25 198.0 14.7 120 31-154 1-123 (475)
4 COG4566 TtrR Response regulato 99.8 3.2E-19 6.9E-24 169.5 13.6 121 31-155 4-124 (202)
5 PF00072 Response_reg: Respons 99.8 3.8E-18 8.3E-23 146.4 15.8 111 34-148 1-112 (112)
6 COG4565 CitB Response regulato 99.8 9.2E-18 2E-22 162.3 14.1 122 32-157 1-124 (224)
7 COG3706 PleD Response regulato 99.8 8.3E-18 1.8E-22 179.3 14.3 185 30-231 131-315 (435)
8 COG3437 Response regulator con 99.7 1E-17 2.2E-22 172.6 13.1 119 31-151 14-133 (360)
9 COG0784 CheY FOG: CheY-like re 99.7 1.4E-16 3.1E-21 139.9 16.8 120 30-152 4-125 (130)
10 COG2197 CitB Response regulato 99.7 1E-16 2.3E-21 156.8 16.3 121 32-156 1-123 (211)
11 PLN03029 type-a response regul 99.7 4.5E-16 9.7E-21 153.1 16.8 125 30-154 7-149 (222)
12 PRK10046 dpiA two-component re 99.7 5.9E-16 1.3E-20 151.2 17.4 122 31-156 4-127 (225)
13 PRK10161 transcriptional regul 99.7 7.4E-16 1.6E-20 148.2 17.7 122 30-153 1-122 (229)
14 TIGR02154 PhoB phosphate regul 99.7 1.2E-15 2.6E-20 144.8 17.3 123 30-154 1-123 (226)
15 PRK10816 DNA-binding transcrip 99.7 1.2E-15 2.5E-20 146.2 17.3 119 32-154 1-119 (223)
16 PRK10529 DNA-binding transcrip 99.7 1.2E-15 2.6E-20 146.0 17.4 118 32-154 2-119 (225)
17 PRK10766 DNA-binding transcrip 99.7 1.4E-15 3E-20 145.2 17.3 120 30-154 1-120 (221)
18 PRK09836 DNA-binding transcrip 99.7 1.7E-15 3.8E-20 145.4 17.5 119 32-154 1-119 (227)
19 PRK10643 DNA-binding transcrip 99.7 2.3E-15 4.9E-20 142.8 17.6 119 32-154 1-119 (222)
20 PRK11173 two-component respons 99.7 2.6E-15 5.7E-20 145.8 17.2 118 32-154 4-121 (237)
21 PRK10336 DNA-binding transcrip 99.7 4.3E-15 9.3E-20 140.8 17.1 119 32-154 1-119 (219)
22 PRK10430 DNA-binding transcrip 99.6 4.1E-15 8.9E-20 146.4 17.1 121 32-154 2-124 (239)
23 PRK09468 ompR osmolarity respo 99.6 4.6E-15 1E-19 143.8 17.2 121 30-154 4-124 (239)
24 COG4567 Response regulator con 99.6 2.2E-15 4.7E-20 138.7 13.8 115 32-150 10-124 (182)
25 PRK10701 DNA-binding transcrip 99.6 5.5E-15 1.2E-19 143.6 17.3 118 32-154 2-119 (240)
26 PRK11083 DNA-binding response 99.6 6.5E-15 1.4E-19 140.2 17.1 120 31-154 3-122 (228)
27 PRK10955 DNA-binding transcrip 99.6 6.4E-15 1.4E-19 141.1 17.1 117 32-154 2-118 (232)
28 PRK13856 two-component respons 99.6 8.2E-15 1.8E-19 143.1 17.3 118 32-154 2-120 (241)
29 TIGR03787 marine_sort_RR prote 99.6 1.1E-14 2.4E-19 139.6 17.4 118 33-154 2-121 (227)
30 PRK11517 transcriptional regul 99.6 1.1E-14 2.5E-19 138.6 17.2 118 32-154 1-118 (223)
31 CHL00148 orf27 Ycf27; Reviewed 99.6 1.5E-14 3.2E-19 139.4 17.4 120 30-154 5-124 (240)
32 KOG0519 Sensory transduction h 99.6 2.5E-15 5.4E-20 172.3 14.1 120 30-151 665-784 (786)
33 PRK11107 hybrid sensory histid 99.6 5.8E-15 1.3E-19 170.1 17.1 122 31-154 667-788 (919)
34 PRK10841 hybrid sensory kinase 99.6 9.1E-15 2E-19 170.7 17.8 121 30-154 800-920 (924)
35 TIGR02875 spore_0_A sporulatio 99.6 1.8E-14 4E-19 143.2 17.0 121 31-153 2-124 (262)
36 PRK15347 two component system 99.6 1.2E-14 2.5E-19 167.8 17.5 121 31-153 690-812 (921)
37 COG3947 Response regulator con 99.6 3.2E-15 6.8E-20 150.3 10.9 117 32-154 1-117 (361)
38 PRK09958 DNA-binding transcrip 99.6 2.8E-14 6E-19 134.3 16.7 119 32-154 1-120 (204)
39 PRK09483 response regulator; P 99.6 3E-14 6.4E-19 135.4 16.8 121 31-155 1-123 (217)
40 TIGR01387 cztR_silR_copR heavy 99.6 3.3E-14 7.3E-19 134.4 17.0 117 34-154 1-117 (218)
41 PRK09581 pleD response regulat 99.6 8.4E-15 1.8E-19 154.3 13.2 119 31-152 155-273 (457)
42 PRK10840 transcriptional regul 99.6 3.5E-14 7.5E-19 137.2 16.5 120 32-155 4-128 (216)
43 PRK15115 response regulator Gl 99.6 2.9E-14 6.3E-19 152.8 16.2 122 29-154 3-124 (444)
44 PRK10365 transcriptional regul 99.6 2.8E-14 6.1E-19 152.3 15.5 120 30-153 4-123 (441)
45 PRK14084 two-component respons 99.6 6.4E-14 1.4E-18 137.5 16.7 117 32-154 1-119 (246)
46 TIGR02956 TMAO_torS TMAO reduc 99.6 3.5E-14 7.6E-19 164.9 17.2 121 31-153 702-823 (968)
47 PRK11466 hybrid sensory histid 99.6 4E-14 8.7E-19 163.8 16.8 122 30-154 680-801 (914)
48 PRK10923 glnG nitrogen regulat 99.6 8.3E-14 1.8E-18 150.4 17.7 118 32-153 4-121 (469)
49 PRK10360 DNA-binding transcrip 99.6 1.2E-13 2.7E-18 129.1 16.2 115 32-153 2-118 (196)
50 PRK09935 transcriptional regul 99.5 2E-13 4.4E-18 128.2 17.0 120 31-154 3-124 (210)
51 PRK11697 putative two-componen 99.5 1.2E-13 2.6E-18 134.4 15.9 116 31-153 1-118 (238)
52 PRK11361 acetoacetate metaboli 99.5 1.1E-13 2.3E-18 148.7 16.8 119 31-153 4-122 (457)
53 PRK11091 aerobic respiration c 99.5 8.1E-14 1.8E-18 159.1 16.8 121 31-154 525-646 (779)
54 PRK15479 transcriptional regul 99.5 2.4E-13 5.3E-18 128.7 17.3 119 32-154 1-119 (221)
55 PRK09581 pleD response regulat 99.5 2.1E-13 4.5E-18 143.7 17.9 121 31-153 2-122 (457)
56 PRK10610 chemotaxis regulatory 99.5 6.3E-13 1.4E-17 112.1 17.2 121 31-153 5-126 (129)
57 TIGR02915 PEP_resp_reg putativ 99.5 1.5E-13 3.2E-18 147.4 16.0 113 34-152 1-118 (445)
58 PRK10710 DNA-binding transcrip 99.5 5.2E-13 1.1E-17 128.6 17.5 118 32-154 11-128 (240)
59 TIGR01818 ntrC nitrogen regula 99.5 2.1E-13 4.6E-18 146.7 16.4 116 34-153 1-116 (463)
60 PRK09959 hybrid sensory histid 99.5 2E-13 4.2E-18 162.7 17.0 119 31-153 958-1076(1197)
61 PRK12555 chemotaxis-specific m 99.5 3E-13 6.5E-18 140.5 16.2 116 32-152 1-129 (337)
62 PRK13435 response regulator; P 99.5 5.3E-13 1.2E-17 120.4 15.2 120 29-156 3-124 (145)
63 PRK09390 fixJ response regulat 99.5 6.5E-13 1.4E-17 122.7 14.9 120 31-154 3-122 (202)
64 PRK10403 transcriptional regul 99.5 1.6E-12 3.5E-17 121.9 16.3 120 30-153 5-126 (215)
65 PRK00742 chemotaxis-specific m 99.5 1.1E-12 2.3E-17 137.2 16.5 117 30-151 2-131 (354)
66 PRK15369 two component system 99.5 3E-12 6.6E-17 118.8 16.7 119 31-153 3-123 (211)
67 PRK13558 bacterio-opsin activa 99.4 1.1E-12 2.3E-17 147.3 14.9 119 31-153 7-127 (665)
68 COG2201 CheB Chemotaxis respon 99.4 9.8E-13 2.1E-17 137.0 12.9 104 31-139 1-108 (350)
69 PRK10651 transcriptional regul 99.4 4.9E-12 1.1E-16 118.9 16.4 120 31-154 6-127 (216)
70 PRK10100 DNA-binding transcrip 99.4 2.6E-12 5.6E-17 126.4 14.0 118 31-157 10-131 (216)
71 PRK11475 DNA-binding transcrip 99.4 4.2E-12 9.2E-17 124.2 13.9 108 44-155 3-117 (207)
72 PRK09191 two-component respons 99.4 1.4E-11 3.1E-16 121.6 16.7 119 29-154 135-255 (261)
73 PRK15411 rcsA colanic acid cap 99.4 1.5E-11 3.2E-16 120.0 16.2 120 32-156 1-126 (207)
74 PRK13837 two-component VirA-li 99.3 2.7E-11 5.7E-16 140.1 17.1 119 31-154 697-815 (828)
75 COG3707 AmiR Response regulato 99.3 1.5E-11 3.1E-16 118.0 11.9 121 29-154 3-124 (194)
76 cd00156 REC Signal receiver do 99.3 6.4E-11 1.4E-15 94.9 13.1 112 35-150 1-112 (113)
77 PRK13557 histidine kinase; Pro 99.2 1.8E-10 4E-15 124.0 15.7 120 31-153 415-535 (540)
78 PRK10693 response regulator of 99.2 1.7E-10 3.7E-15 118.7 12.8 91 60-154 2-93 (303)
79 COG3279 LytT Response regulato 99.1 8.5E-10 1.8E-14 110.6 11.7 117 31-153 1-119 (244)
80 PRK15029 arginine decarboxylas 99.0 1.6E-09 3.5E-14 123.5 14.1 119 32-154 1-134 (755)
81 PRK11107 hybrid sensory histid 98.5 6.5E-07 1.4E-11 103.8 11.8 115 31-151 536-650 (919)
82 COG3706 PleD Response regulato 98.1 2.2E-06 4.7E-11 92.4 5.3 92 56-153 13-104 (435)
83 PF06490 FleQ: Flagellar regul 97.8 0.00015 3.2E-09 64.3 9.8 107 33-150 1-107 (109)
84 smart00448 REC cheY-homologous 97.7 0.00025 5.4E-09 49.0 8.0 55 32-88 1-55 (55)
85 cd02071 MM_CoA_mut_B12_BD meth 96.6 0.068 1.5E-06 47.9 13.5 111 33-147 1-120 (122)
86 PRK02261 methylaspartate mutas 96.5 0.11 2.4E-06 48.0 14.9 118 31-152 3-135 (137)
87 PF03709 OKR_DC_1_N: Orn/Lys/A 96.4 0.028 6.2E-07 50.1 9.9 105 44-152 6-113 (115)
88 cd02067 B12-binding B12 bindin 95.7 0.15 3.3E-06 45.0 11.2 94 38-136 10-109 (119)
89 PRK10618 phosphotransfer inter 95.5 0.013 2.9E-07 69.2 4.9 49 31-87 689-737 (894)
90 TIGR00640 acid_CoA_mut_C methy 95.4 0.54 1.2E-05 43.1 13.7 110 38-151 13-127 (132)
91 PRK15399 lysine decarboxylase 94.6 0.28 6.1E-06 56.7 11.9 117 32-154 1-124 (713)
92 PRK15400 lysine decarboxylase 94.1 0.35 7.6E-06 55.9 11.2 117 32-154 1-124 (714)
93 TIGR01501 MthylAspMutase methy 94.0 1.6 3.5E-05 40.3 13.3 108 40-151 14-132 (134)
94 TIGR03815 CpaE_hom_Actino heli 93.7 0.32 6.9E-06 50.5 9.1 85 55-151 1-86 (322)
95 cd02070 corrinoid_protein_B12- 93.2 1.2 2.5E-05 43.4 11.7 101 31-136 82-191 (201)
96 cd04728 ThiG Thiazole synthase 92.6 1.9 4.2E-05 43.7 12.4 111 32-153 94-226 (248)
97 cd02069 methionine_synthase_B1 91.9 1.7 3.8E-05 43.0 11.1 105 31-139 88-204 (213)
98 PRK00208 thiG thiazole synthas 91.3 4.3 9.4E-05 41.3 13.2 111 32-153 94-226 (250)
99 cd02072 Glm_B12_BD B12 binding 90.5 7.6 0.00016 35.7 12.9 105 40-148 12-127 (128)
100 PF03602 Cons_hypoth95: Conser 90.0 2.4 5.1E-05 41.0 9.8 95 18-113 53-151 (183)
101 TIGR02370 pyl_corrinoid methyl 89.9 2.8 6E-05 40.9 10.3 100 32-136 85-193 (197)
102 PF02310 B12-binding: B12 bind 88.6 4.1 9E-05 35.5 9.6 91 40-135 13-110 (121)
103 PRK00043 thiE thiamine-phospha 88.3 12 0.00026 35.9 13.5 83 61-149 111-206 (212)
104 COG4999 Uncharacterized domain 88.2 2.3 5E-05 38.7 7.6 109 31-147 11-121 (140)
105 COG2185 Sbm Methylmalonyl-CoA 87.6 22 0.00048 33.3 13.9 117 31-151 12-137 (143)
106 cd02068 radical_SAM_B12_BD B12 86.4 7.2 0.00016 34.7 9.9 106 42-151 3-111 (127)
107 PF01408 GFO_IDH_MocA: Oxidore 86.2 12 0.00026 32.3 11.1 107 32-153 1-112 (120)
108 PRK01130 N-acetylmannosamine-6 85.1 13 0.00028 36.4 11.9 86 45-136 108-202 (221)
109 PRK00278 trpC indole-3-glycero 84.8 25 0.00053 35.8 14.0 90 41-135 146-239 (260)
110 PRK09426 methylmalonyl-CoA mut 83.5 15 0.00032 43.0 13.0 116 32-151 583-707 (714)
111 PF02254 TrkA_N: TrkA-N domain 83.3 19 0.0004 31.0 10.9 95 29-134 19-114 (116)
112 PF10087 DUF2325: Uncharacteri 83.0 10 0.00023 32.4 9.0 90 33-126 1-93 (97)
113 COG0512 PabA Anthranilate/para 83.0 2 4.3E-05 42.1 4.9 77 31-114 1-81 (191)
114 CHL00162 thiG thiamin biosynth 82.8 39 0.00084 34.8 14.1 100 47-153 129-240 (267)
115 TIGR00095 RNA methyltransferas 81.5 23 0.00051 34.1 11.8 88 28-115 69-159 (189)
116 PRK03958 tRNA 2'-O-methylase; 81.2 14 0.0003 35.8 9.8 65 32-98 32-98 (176)
117 TIGR02026 BchE magnesium-proto 81.1 18 0.0004 40.1 12.3 107 40-151 21-136 (497)
118 PRK12704 phosphodiesterase; Pr 79.9 3.3 7.2E-05 46.4 6.1 45 109-153 251-297 (520)
119 PRK11572 copper homeostasis pr 79.9 16 0.00035 37.2 10.4 117 2-134 63-196 (248)
120 cd04729 NanE N-acetylmannosami 79.7 33 0.00072 33.5 12.5 81 50-136 117-206 (219)
121 PF07688 KaiA: KaiA domain; I 79.0 11 0.00023 38.7 8.6 79 33-116 2-80 (283)
122 PF05690 ThiG: Thiazole biosyn 78.8 18 0.0004 36.6 10.2 113 32-151 94-224 (247)
123 TIGR03239 GarL 2-dehydro-3-deo 78.3 24 0.00051 35.9 11.1 100 47-149 3-105 (249)
124 cd02065 B12-binding_like B12 b 78.3 14 0.0003 32.2 8.4 72 38-113 10-86 (125)
125 PRK08385 nicotinate-nucleotide 77.4 24 0.00052 36.6 10.9 97 33-135 156-258 (278)
126 PRK10558 alpha-dehydro-beta-de 77.4 26 0.00057 35.7 11.2 101 46-149 9-112 (256)
127 TIGR03151 enACPred_II putative 77.0 26 0.00057 36.6 11.3 84 47-136 101-190 (307)
128 TIGR02311 HpaI 2,4-dihydroxyhe 76.7 33 0.00072 34.7 11.6 101 47-150 3-106 (249)
129 PRK10128 2-keto-3-deoxy-L-rham 76.6 31 0.00067 35.5 11.5 101 46-149 8-111 (267)
130 TIGR00007 phosphoribosylformim 76.5 43 0.00093 32.8 12.2 68 63-135 146-217 (230)
131 cd04724 Tryptophan_synthase_al 75.0 31 0.00067 34.7 10.9 57 92-151 64-126 (242)
132 COG3836 HpcH 2,4-dihydroxyhept 74.9 28 0.0006 35.4 10.2 98 46-147 7-107 (255)
133 COG0742 N6-adenine-specific me 74.4 24 0.00053 34.5 9.5 68 19-88 55-125 (187)
134 PRK12724 flagellar biosynthesi 73.4 45 0.00097 36.8 12.2 105 29-135 250-366 (432)
135 cd04730 NPD_like 2-Nitropropan 73.4 65 0.0014 31.5 12.6 98 31-136 80-185 (236)
136 cd00452 KDPG_aldolase KDPG and 72.7 32 0.00069 33.0 10.0 79 50-136 92-171 (190)
137 cd00331 IGPS Indole-3-glycerol 72.5 45 0.00097 32.5 11.1 79 52-135 118-200 (217)
138 TIGR00693 thiE thiamine-phosph 71.8 32 0.0007 32.7 9.8 70 60-135 102-179 (196)
139 cd04962 GT1_like_5 This family 71.8 41 0.00088 34.3 11.2 115 23-152 219-335 (371)
140 COG2022 ThiG Uncharacterized e 71.2 39 0.00084 34.4 10.2 98 32-136 101-211 (262)
141 PRK11359 cyclic-di-GMP phospho 70.7 34 0.00074 39.3 11.4 102 45-149 681-793 (799)
142 cd04726 KGPDC_HPS 3-Keto-L-gul 70.1 79 0.0017 30.1 12.1 103 27-136 73-186 (202)
143 PRK07649 para-aminobenzoate/an 69.9 5.7 0.00012 38.6 4.1 49 34-84 2-50 (195)
144 COG2200 Rtn c-di-GMP phosphodi 69.8 40 0.00088 34.0 10.4 103 43-148 137-250 (256)
145 PRK13125 trpA tryptophan synth 69.7 62 0.0014 32.4 11.7 90 42-136 116-214 (244)
146 TIGR00566 trpG_papA glutamine 69.6 13 0.00029 35.7 6.6 76 34-114 2-79 (188)
147 KOG4175 Tryptophan synthase al 69.4 21 0.00045 35.5 7.7 54 94-149 84-143 (268)
148 PLN02871 UDP-sulfoquinovose:DA 68.5 54 0.0012 35.6 11.8 107 31-152 290-399 (465)
149 PF14097 SpoVAE: Stage V sporu 68.4 54 0.0012 31.7 10.1 83 34-116 3-94 (180)
150 cd00564 TMP_TenI Thiamine mono 68.3 48 0.001 30.9 10.0 69 61-136 102-178 (196)
151 PRK08007 para-aminobenzoate sy 68.3 18 0.0004 34.7 7.2 88 34-130 2-91 (187)
152 cd03114 ArgK-like The function 67.7 24 0.00053 32.6 7.7 85 23-116 19-123 (148)
153 TIGR01037 pyrD_sub1_fam dihydr 67.2 67 0.0015 33.0 11.6 59 93-154 223-287 (300)
154 PF03808 Glyco_tran_WecB: Glyc 66.9 44 0.00096 31.7 9.4 78 30-114 47-133 (172)
155 PRK14974 cell division protein 66.8 88 0.0019 33.3 12.5 107 27-136 164-287 (336)
156 PRK13111 trpA tryptophan synth 66.6 21 0.00045 36.5 7.5 59 91-151 75-139 (258)
157 PRK03659 glutathione-regulated 66.5 52 0.0011 37.5 11.5 98 27-135 419-517 (601)
158 PRK05458 guanosine 5'-monophos 66.3 1E+02 0.0022 32.7 12.8 98 33-136 113-230 (326)
159 smart00052 EAL Putative diguan 65.8 33 0.00072 32.9 8.6 92 46-140 137-239 (241)
160 PRK03708 ppnK inorganic polyph 65.7 53 0.0011 33.9 10.4 100 32-154 1-113 (277)
161 PRK03562 glutathione-regulated 65.6 46 0.001 38.2 10.9 98 26-134 418-516 (621)
162 PF04321 RmlD_sub_bind: RmlD s 65.3 13 0.00028 38.0 5.8 83 32-116 1-102 (286)
163 PRK01372 ddl D-alanine--D-alan 65.3 12 0.00026 38.1 5.6 55 28-84 1-63 (304)
164 PRK05749 3-deoxy-D-manno-octul 65.1 71 0.0015 34.0 11.7 111 30-152 261-387 (425)
165 PRK06774 para-aminobenzoate sy 65.0 8.6 0.00019 36.9 4.2 76 34-114 2-79 (191)
166 cd01948 EAL EAL domain. This d 65.0 26 0.00057 33.6 7.7 92 46-140 136-238 (240)
167 COG0673 MviM Predicted dehydro 64.7 1.2E+02 0.0026 31.1 12.9 108 30-151 2-115 (342)
168 cd04727 pdxS PdxS is a subunit 64.2 1.1E+02 0.0023 32.0 12.1 87 61-153 119-247 (283)
169 PRK04302 triosephosphate isome 63.2 1.3E+02 0.0028 29.7 12.2 101 30-136 84-202 (223)
170 PRK07259 dihydroorotate dehydr 63.0 88 0.0019 32.1 11.5 59 93-154 223-287 (301)
171 COG0313 Predicted methyltransf 63.0 59 0.0013 33.7 9.9 113 31-151 30-153 (275)
172 TIGR03088 stp2 sugar transfera 62.8 67 0.0015 33.1 10.7 107 31-152 229-337 (374)
173 TIGR00343 pyridoxal 5'-phospha 62.7 60 0.0013 33.9 10.0 60 91-153 184-250 (287)
174 cd04722 TIM_phosphate_binding 62.6 63 0.0014 29.6 9.5 105 26-135 79-198 (200)
175 PRK05703 flhF flagellar biosyn 62.2 90 0.0019 34.2 11.9 93 29-122 249-347 (424)
176 cd06533 Glyco_transf_WecG_TagA 62.2 55 0.0012 31.0 9.1 77 31-114 46-131 (171)
177 PRK00748 1-(5-phosphoribosyl)- 62.1 40 0.00086 33.0 8.5 67 64-135 148-219 (233)
178 COG3172 NadR Predicted ATPase/ 62.1 61 0.0013 31.4 9.1 93 19-125 66-174 (187)
179 PRK05567 inosine 5'-monophosph 62.0 1.4E+02 0.003 33.2 13.5 111 22-136 229-360 (486)
180 PF05582 Peptidase_U57: YabG p 61.9 1.1E+02 0.0023 32.0 11.6 52 30-83 104-160 (287)
181 KOG1562 Spermidine synthase [A 61.3 26 0.00056 36.8 7.0 80 16-97 130-215 (337)
182 cd06346 PBP1_ABC_ligand_bindin 61.2 1.3E+02 0.0029 30.4 12.4 83 32-120 138-231 (312)
183 PF03060 NMO: Nitronate monoox 60.8 90 0.002 32.8 11.3 84 47-136 128-219 (330)
184 PF01596 Methyltransf_3: O-met 60.8 31 0.00066 34.0 7.3 90 21-115 61-155 (205)
185 TIGR00736 nifR3_rel_arch TIM-b 60.6 1.4E+02 0.0031 30.1 12.1 95 36-135 116-219 (231)
186 PRK10669 putative cation:proto 60.5 1.1E+02 0.0024 34.4 12.6 95 29-134 438-533 (558)
187 PRK13143 hisH imidazole glycer 60.4 32 0.00069 33.4 7.3 44 32-83 1-44 (200)
188 CHL00101 trpG anthranilate syn 60.3 21 0.00044 34.4 5.9 76 34-114 2-79 (190)
189 TIGR01761 thiaz-red thiazoliny 60.2 1.1E+02 0.0024 32.7 11.8 103 31-152 3-113 (343)
190 cd03823 GT1_ExpE7_like This fa 60.1 1.2E+02 0.0025 30.0 11.6 107 31-152 220-328 (359)
191 PRK05581 ribulose-phosphate 3- 60.1 68 0.0015 31.0 9.6 86 48-136 102-198 (220)
192 PTZ00314 inosine-5'-monophosph 59.9 1.1E+02 0.0023 34.4 12.1 31 106-136 343-373 (495)
193 PRK15484 lipopolysaccharide 1, 59.7 1.8E+02 0.0039 30.7 13.4 109 31-152 224-343 (380)
194 PF01729 QRPTase_C: Quinolinat 59.7 33 0.00071 32.8 7.1 70 59-135 85-154 (169)
195 TIGR02855 spore_yabG sporulati 59.6 1.2E+02 0.0027 31.5 11.4 53 29-83 102-159 (283)
196 PF03932 CutC: CutC family; I 59.5 40 0.00087 33.3 7.8 124 2-134 62-197 (201)
197 cd04723 HisA_HisF Phosphoribos 59.3 1.4E+02 0.0029 29.8 11.8 67 64-135 148-217 (233)
198 PF00218 IGPS: Indole-3-glycer 59.1 96 0.0021 31.7 10.7 99 33-136 134-238 (254)
199 PRK07206 hypothetical protein; 58.9 1.4E+02 0.0031 31.8 12.6 30 30-60 1-30 (416)
200 TIGR00262 trpA tryptophan synt 58.8 38 0.00083 34.4 7.8 58 91-150 73-136 (256)
201 PLN02274 inosine-5'-monophosph 58.7 1.6E+02 0.0034 33.2 13.2 100 31-136 260-380 (505)
202 TIGR00735 hisF imidazoleglycer 58.7 1E+02 0.0023 30.9 10.9 65 65-135 158-228 (254)
203 PRK13566 anthranilate synthase 58.7 32 0.00069 40.3 8.0 78 30-114 525-605 (720)
204 cd06338 PBP1_ABC_ligand_bindin 58.3 1.4E+02 0.003 30.4 12.1 78 32-115 142-230 (345)
205 PRK11840 bifunctional sulfur c 58.3 2.6E+02 0.0056 29.8 14.3 114 32-152 168-299 (326)
206 COG0157 NadC Nicotinate-nucleo 58.0 1E+02 0.0022 32.1 10.6 95 33-135 160-261 (280)
207 cd03813 GT1_like_3 This family 58.0 87 0.0019 34.2 11.0 108 31-153 324-442 (475)
208 PRK06895 putative anthranilate 57.9 14 0.00031 35.4 4.4 31 32-62 2-32 (190)
209 cd01424 MGS_CPS_II Methylglyox 57.9 1.1E+02 0.0025 26.4 9.7 22 40-61 11-32 (110)
210 PRK07765 para-aminobenzoate sy 57.9 31 0.00068 34.0 6.8 79 32-114 1-83 (214)
211 PRK09490 metH B12-dependent me 57.8 65 0.0014 40.1 10.7 103 32-138 752-866 (1229)
212 PRK02155 ppnK NAD(+)/NADH kina 57.6 1E+02 0.0022 32.0 10.8 103 32-154 6-120 (291)
213 TIGR02082 metH 5-methyltetrahy 57.4 78 0.0017 39.3 11.3 105 31-139 732-848 (1178)
214 TIGR00064 ftsY signal recognit 57.4 1.5E+02 0.0032 30.5 11.8 57 27-85 96-162 (272)
215 PRK05637 anthranilate synthase 56.6 21 0.00045 35.2 5.3 77 32-114 2-80 (208)
216 PF09936 Methyltrn_RNA_4: SAM- 56.4 99 0.0021 30.3 9.6 101 32-140 43-162 (185)
217 PRK06552 keto-hydroxyglutarate 56.2 1.1E+02 0.0023 30.5 10.2 63 81-146 40-104 (213)
218 KOG1601 GATA-4/5/6 transcripti 56.0 3.1 6.6E-05 40.8 -0.6 112 35-148 19-134 (340)
219 TIGR01303 IMP_DH_rel_1 IMP deh 56.0 1.2E+02 0.0027 33.7 11.8 67 63-134 225-292 (475)
220 cd03825 GT1_wcfI_like This fam 56.0 37 0.0008 34.2 7.3 75 32-113 1-82 (365)
221 PRK14098 glycogen synthase; Pr 55.5 1.6E+02 0.0035 32.7 12.6 112 31-152 336-450 (489)
222 PRK10060 RNase II stability mo 55.1 1.2E+02 0.0026 34.9 11.9 104 43-149 542-656 (663)
223 PRK07028 bifunctional hexulose 54.9 3.1E+02 0.0068 29.8 15.6 126 22-153 73-212 (430)
224 PRK10909 rsmD 16S rRNA m(2)G96 54.8 1.3E+02 0.0029 29.4 10.6 86 27-115 72-159 (199)
225 PRK10818 cell division inhibit 54.8 24 0.00052 35.3 5.6 41 1-41 1-41 (270)
226 PRK00811 spermidine synthase; 54.7 1.1E+02 0.0025 31.3 10.6 68 31-101 100-179 (283)
227 cd03804 GT1_wbaZ_like This fam 54.4 1.1E+02 0.0024 31.1 10.6 107 30-153 220-326 (351)
228 PRK14722 flhF flagellar biosyn 54.3 1E+02 0.0022 33.4 10.4 88 32-121 168-261 (374)
229 TIGR01163 rpe ribulose-phospha 54.1 43 0.00094 32.0 7.1 101 32-136 80-193 (210)
230 PRK02083 imidazole glycerol ph 53.3 1.5E+02 0.0032 29.7 11.0 77 65-147 156-244 (253)
231 cd00429 RPE Ribulose-5-phospha 52.9 59 0.0013 30.9 7.8 85 48-136 98-194 (211)
232 PRK13585 1-(5-phosphoribosyl)- 52.7 1.9E+02 0.0042 28.4 11.6 77 63-144 150-236 (241)
233 TIGR01182 eda Entner-Doudoroff 52.6 90 0.002 30.9 9.0 82 59-146 14-96 (204)
234 PRK12726 flagellar biosynthesi 52.5 1.8E+02 0.0038 32.0 11.8 104 30-135 233-349 (407)
235 TIGR00262 trpA tryptophan synt 52.5 2.2E+02 0.0049 28.9 12.2 110 24-136 105-227 (256)
236 PRK09922 UDP-D-galactose:(gluc 52.4 2.9E+02 0.0062 28.6 13.5 111 31-154 210-325 (359)
237 PRK05458 guanosine 5'-monophos 52.2 53 0.0011 34.8 7.8 67 64-134 99-166 (326)
238 PRK05567 inosine 5'-monophosph 51.9 1.5E+02 0.0032 33.1 11.6 65 65-134 230-295 (486)
239 cd08185 Fe-ADH1 Iron-containin 51.4 94 0.002 33.1 9.7 66 30-100 24-103 (380)
240 cd06326 PBP1_STKc_like Type I 51.4 2.4E+02 0.0053 28.4 12.4 80 32-117 137-227 (336)
241 cd03819 GT1_WavL_like This fam 51.3 2.7E+02 0.0058 27.9 12.8 109 30-151 215-328 (355)
242 PRK07695 transcriptional regul 51.3 1.7E+02 0.0037 28.1 10.7 67 61-134 102-175 (201)
243 TIGR00417 speE spermidine synt 51.0 1.4E+02 0.0031 30.2 10.5 68 31-101 96-174 (270)
244 COG3142 CutC Uncharacterized p 51.0 1.3E+02 0.0028 30.6 9.7 120 2-136 63-200 (241)
245 PLN02335 anthranilate synthase 50.8 19 0.00041 35.7 4.1 77 32-114 19-98 (222)
246 PRK01911 ppnK inorganic polyph 50.7 1.8E+02 0.0038 30.4 11.2 103 32-154 1-121 (292)
247 PRK03378 ppnK inorganic polyph 50.7 1.5E+02 0.0032 30.9 10.8 104 31-154 5-120 (292)
248 PRK01231 ppnK inorganic polyph 50.6 1.6E+02 0.0036 30.6 11.0 103 32-154 5-119 (295)
249 PRK06543 nicotinate-nucleotide 50.5 1.5E+02 0.0033 30.8 10.7 92 33-134 161-263 (281)
250 PRK11889 flhF flagellar biosyn 50.4 1.9E+02 0.0041 32.0 11.7 105 29-135 267-384 (436)
251 COG0421 SpeE Spermidine syntha 50.3 43 0.00093 34.8 6.6 84 16-102 85-179 (282)
252 PRK06843 inosine 5-monophospha 50.3 2E+02 0.0044 31.5 12.0 104 30-136 164-285 (404)
253 PRK13146 hisH imidazole glycer 49.9 62 0.0013 31.7 7.4 45 31-83 1-47 (209)
254 cd08179 NADPH_BDH NADPH-depend 49.5 1.5E+02 0.0034 31.5 11.0 64 32-100 24-101 (375)
255 PRK05670 anthranilate synthase 49.5 23 0.00051 33.8 4.3 48 34-83 2-49 (189)
256 PRK09140 2-dehydro-3-deoxy-6-p 49.3 1.3E+02 0.0028 29.7 9.5 63 82-147 38-100 (206)
257 PRK13587 1-(5-phosphoribosyl)- 49.2 99 0.0021 30.9 8.9 67 65-135 151-220 (234)
258 COG4122 Predicted O-methyltran 49.2 54 0.0012 32.9 6.9 68 31-99 84-155 (219)
259 PF04131 NanE: Putative N-acet 49.1 1.6E+02 0.0034 29.1 9.8 84 46-136 83-173 (192)
260 cd03801 GT1_YqgM_like This fam 49.0 2.6E+02 0.0056 27.1 12.0 108 31-153 230-341 (374)
261 PRK05848 nicotinate-nucleotide 48.9 3.2E+02 0.0069 28.3 12.7 99 28-135 147-256 (273)
262 COG3959 Transketolase, N-termi 48.6 33 0.00071 34.7 5.2 70 18-87 154-242 (243)
263 PRK05718 keto-hydroxyglutarate 48.5 2.9E+02 0.0062 27.5 12.2 99 30-137 15-136 (212)
264 PRK15427 colanic acid biosynth 48.4 3E+02 0.0066 29.4 13.1 108 31-152 253-369 (406)
265 PLN02823 spermine synthase 48.4 1E+02 0.0022 32.8 9.2 56 30-88 126-187 (336)
266 cd04740 DHOD_1B_like Dihydroor 48.0 2.2E+02 0.0048 29.0 11.5 59 93-154 220-284 (296)
267 cd06382 PBP1_iGluR_Kainate N-t 48.0 1.5E+02 0.0032 30.1 10.2 81 32-116 130-218 (327)
268 PLN02591 tryptophan synthase 47.9 91 0.002 31.8 8.5 58 91-151 65-128 (250)
269 PF00563 EAL: EAL domain; Int 47.7 30 0.00064 33.1 4.8 85 45-133 138-228 (236)
270 TIGR00308 TRM1 tRNA(guanine-26 47.5 3.3E+02 0.0072 29.4 13.1 91 32-130 70-167 (374)
271 TIGR03704 PrmC_rel_meth putati 47.3 2.5E+02 0.0053 28.3 11.5 93 31-126 110-228 (251)
272 cd08181 PPD-like 1,3-propanedi 47.2 1.6E+02 0.0034 31.2 10.6 65 31-100 25-103 (357)
273 PRK04539 ppnK inorganic polyph 47.0 2.3E+02 0.0049 29.6 11.4 104 31-154 5-125 (296)
274 PF02581 TMP-TENI: Thiamine mo 46.9 1.5E+02 0.0033 28.0 9.4 69 59-134 100-175 (180)
275 PLN02591 tryptophan synthase 46.9 2.9E+02 0.0064 28.1 11.9 110 23-137 95-219 (250)
276 PLN02274 inosine-5'-monophosph 46.8 1.1E+02 0.0023 34.4 9.6 65 65-135 251-316 (505)
277 PLN02775 Probable dihydrodipic 46.8 3.2E+02 0.007 28.5 12.3 105 30-141 10-139 (286)
278 PRK06978 nicotinate-nucleotide 46.7 84 0.0018 32.9 8.1 92 33-134 178-275 (294)
279 PRK06096 molybdenum transport 46.4 94 0.002 32.4 8.4 71 58-135 193-263 (284)
280 cd02911 arch_FMN Archeal FMN-b 46.3 3E+02 0.0066 27.5 11.9 90 38-135 123-219 (233)
281 PRK14723 flhF flagellar biosyn 46.3 1.9E+02 0.0041 34.4 11.7 102 32-135 216-330 (767)
282 cd06330 PBP1_Arsenic_SBP_like 46.2 1.9E+02 0.0042 29.5 10.8 81 32-116 139-232 (346)
283 TIGR01425 SRP54_euk signal rec 46.1 2.3E+02 0.005 31.3 11.7 103 29-135 126-246 (429)
284 PRK11036 putative S-adenosyl-L 46.0 2.6E+02 0.0056 27.8 11.4 77 22-101 57-137 (255)
285 cd06329 PBP1_SBP_like_3 Peripl 45.9 2.4E+02 0.0052 28.9 11.5 78 32-115 144-235 (342)
286 PRK03372 ppnK inorganic polyph 45.9 2.3E+02 0.0049 29.8 11.2 103 32-154 6-129 (306)
287 cd01573 modD_like ModD; Quinol 45.8 1.6E+02 0.0036 30.2 10.1 71 58-135 187-257 (272)
288 cd03818 GT1_ExpC_like This fam 45.8 2.3E+02 0.0049 29.7 11.5 77 63-153 290-366 (396)
289 CHL00200 trpA tryptophan synth 45.7 68 0.0015 32.9 7.2 57 91-150 78-140 (263)
290 cd02809 alpha_hydroxyacid_oxid 45.6 2.8E+02 0.006 28.6 11.8 72 61-136 180-256 (299)
291 PRK04885 ppnK inorganic polyph 45.6 1.6E+02 0.0035 30.2 9.9 77 44-154 17-94 (265)
292 PF07652 Flavi_DEAD: Flaviviru 45.5 1E+02 0.0023 29.1 7.7 87 30-117 32-136 (148)
293 PRK04296 thymidine kinase; Pro 45.5 22 0.00049 34.1 3.5 80 30-113 29-112 (190)
294 cd00381 IMPDH IMPDH: The catal 45.1 2.9E+02 0.0063 29.1 12.0 101 31-135 106-225 (325)
295 PLN02366 spermidine synthase 45.1 1.5E+02 0.0032 31.1 9.7 70 31-102 115-195 (308)
296 TIGR03449 mycothiol_MshA UDP-N 45.0 3E+02 0.0065 28.7 12.3 107 32-152 253-367 (405)
297 cd05212 NAD_bind_m-THF_DH_Cycl 44.9 80 0.0017 29.3 6.9 53 30-89 27-83 (140)
298 COG0118 HisH Glutamine amidotr 44.9 54 0.0012 32.5 6.0 37 31-67 1-37 (204)
299 PRK06015 keto-hydroxyglutarate 44.9 1.2E+02 0.0025 30.1 8.4 59 84-146 34-92 (201)
300 PRK04180 pyridoxal biosynthesi 44.7 67 0.0015 33.6 7.0 61 91-154 190-257 (293)
301 cd08187 BDH Butanol dehydrogen 44.7 1.4E+02 0.0029 32.0 9.7 80 31-115 28-136 (382)
302 cd06356 PBP1_Amide_Urea_BP_lik 44.7 2.2E+02 0.0047 29.2 10.9 78 31-113 132-220 (334)
303 KOG3040 Predicted sugar phosph 44.7 1.2E+02 0.0025 30.7 8.2 99 26-152 34-136 (262)
304 PF03328 HpcH_HpaI: HpcH/HpaI 44.4 2.2E+02 0.0048 27.8 10.4 86 62-150 8-106 (221)
305 PRK00771 signal recognition pa 44.4 3.5E+02 0.0077 29.8 12.9 87 28-117 120-217 (437)
306 cd06355 PBP1_FmdD_like Peripla 44.3 1.3E+02 0.0029 31.1 9.3 78 31-112 133-222 (348)
307 PRK07428 nicotinate-nucleotide 44.1 2.3E+02 0.0049 29.6 10.8 94 34-134 169-269 (288)
308 PRK10867 signal recognition pa 43.9 3.2E+02 0.0068 30.2 12.4 102 31-135 129-247 (433)
309 PF06283 ThuA: Trehalose utili 43.8 58 0.0013 31.7 6.2 76 33-114 1-88 (217)
310 PRK10416 signal recognition pa 43.7 3.8E+02 0.0083 28.1 12.6 90 29-120 140-247 (318)
311 PRK06559 nicotinate-nucleotide 43.5 1.4E+02 0.003 31.3 9.0 92 33-134 169-267 (290)
312 TIGR01334 modD putative molybd 43.2 1.9E+02 0.0041 30.1 10.0 70 58-134 192-261 (277)
313 cd05844 GT1_like_7 Glycosyltra 43.1 3.7E+02 0.008 27.2 12.9 108 31-152 219-335 (367)
314 PRK11829 biofilm formation reg 43.0 2.7E+02 0.0058 31.6 12.2 100 43-147 540-652 (660)
315 cd04732 HisA HisA. Phosphorib 42.9 2.3E+02 0.0049 27.6 10.3 68 63-135 147-218 (234)
316 cd00532 MGS-like MGS-like doma 42.8 70 0.0015 28.0 6.0 15 67-83 59-74 (112)
317 PRK06843 inosine 5-monophospha 42.7 1.2E+02 0.0026 33.2 8.9 64 66-135 157-221 (404)
318 PRK09522 bifunctional glutamin 42.7 38 0.00083 38.2 5.3 76 32-114 2-84 (531)
319 PRK02649 ppnK inorganic polyph 42.6 2.1E+02 0.0046 30.0 10.4 103 32-154 2-125 (305)
320 cd04731 HisF The cyclase subun 42.6 1.4E+02 0.0031 29.5 8.9 64 66-135 153-222 (243)
321 PF03102 NeuB: NeuB family; I 42.6 91 0.002 31.6 7.5 77 41-125 55-131 (241)
322 PRK04457 spermidine synthase; 42.4 2.7E+02 0.0059 28.2 11.0 69 31-102 90-166 (262)
323 PRK01581 speE spermidine synth 42.4 1.1E+02 0.0025 33.1 8.5 69 31-102 174-257 (374)
324 cd03785 GT1_MurG MurG is an N- 42.4 3.8E+02 0.0082 27.1 13.5 65 78-152 253-323 (350)
325 PRK14340 (dimethylallyl)adenos 42.3 1.8E+02 0.004 31.9 10.4 110 27-150 2-121 (445)
326 PRK08649 inosine 5-monophospha 42.3 3.7E+02 0.0081 29.0 12.4 67 63-136 142-215 (368)
327 PF01564 Spermine_synth: Sperm 42.2 71 0.0015 32.2 6.7 69 31-101 100-179 (246)
328 PRK09016 quinolinate phosphori 42.2 1.1E+02 0.0024 32.0 8.2 68 58-135 212-279 (296)
329 cd04951 GT1_WbdM_like This fam 42.2 2E+02 0.0044 28.7 10.1 105 31-152 219-325 (360)
330 TIGR01579 MiaB-like-C MiaB-lik 42.0 1.7E+02 0.0037 31.5 10.0 94 41-150 10-107 (414)
331 cd03806 GT1_ALG11_like This fa 41.9 3E+02 0.0065 29.6 11.9 110 31-152 273-391 (419)
332 cd03805 GT1_ALG2_like This fam 41.8 3.4E+02 0.0074 27.9 12.0 108 31-153 245-364 (392)
333 cd03115 SRP The signal recogni 41.7 2.8E+02 0.006 25.6 10.2 86 27-117 24-124 (173)
334 PRK03604 moaC bifunctional mol 41.7 53 0.0011 34.6 5.8 65 20-84 146-222 (312)
335 TIGR00696 wecB_tagA_cpsF bacte 41.6 1.8E+02 0.0039 27.9 9.1 62 30-93 47-116 (177)
336 PRK05718 keto-hydroxyglutarate 41.6 3.2E+02 0.0069 27.1 11.0 94 47-146 8-103 (212)
337 PRK12723 flagellar biosynthesi 41.6 3.4E+02 0.0074 29.5 12.1 102 31-135 206-319 (388)
338 cd03802 GT1_AviGT4_like This f 41.5 2.4E+02 0.0053 27.9 10.5 106 30-151 196-306 (335)
339 PRK07896 nicotinate-nucleotide 41.5 4.3E+02 0.0093 27.6 12.3 70 58-134 203-272 (289)
340 cd00331 IGPS Indole-3-glycerol 41.5 2.4E+02 0.0051 27.4 10.1 68 80-150 48-117 (217)
341 PRK03612 spermidine synthase; 41.4 1.4E+02 0.0031 33.5 9.5 68 32-102 322-404 (521)
342 cd01568 QPRTase_NadC Quinolina 41.2 89 0.0019 32.0 7.3 94 33-135 153-254 (269)
343 PRK14329 (dimethylallyl)adenos 41.2 1.7E+02 0.0037 32.3 10.0 104 32-151 24-139 (467)
344 PRK13609 diacylglycerol glucos 41.1 4.3E+02 0.0094 27.4 13.5 105 31-152 230-337 (380)
345 cd01572 QPRTase Quinolinate ph 41.0 3.3E+02 0.0072 27.9 11.4 92 33-134 154-252 (268)
346 PRK14994 SAM-dependent 16S rib 41.0 1.9E+02 0.0042 30.0 9.8 95 31-134 37-140 (287)
347 PRK13789 phosphoribosylamine-- 40.2 3.9E+02 0.0085 29.2 12.5 61 31-93 4-84 (426)
348 TIGR01859 fruc_bis_ald_ fructo 40.1 2.2E+02 0.0047 29.5 10.0 70 61-136 152-230 (282)
349 PRK12727 flagellar biosynthesi 40.0 2.3E+02 0.0051 32.3 10.8 53 32-85 381-436 (559)
350 PF00534 Glycos_transf_1: Glyc 40.0 2.8E+02 0.006 24.9 9.8 110 30-154 46-159 (172)
351 PTZ00314 inosine-5'-monophosph 39.7 1.8E+02 0.0039 32.6 9.9 54 78-134 254-308 (495)
352 PRK08318 dihydropyrimidine deh 39.7 3.6E+02 0.0078 29.2 12.1 62 93-154 239-307 (420)
353 cd06359 PBP1_Nba_like Type I p 39.6 4.2E+02 0.0092 26.9 12.3 48 63-114 174-221 (333)
354 COG0134 TrpC Indole-3-glycerol 39.6 3.7E+02 0.008 27.7 11.2 86 45-136 146-236 (254)
355 cd06296 PBP1_CatR_like Ligand- 39.6 1.2E+02 0.0027 29.3 7.8 65 42-115 16-86 (270)
356 TIGR00959 ffh signal recogniti 39.3 3.1E+02 0.0067 30.2 11.4 86 29-117 126-224 (428)
357 cd06282 PBP1_GntR_like_2 Ligan 39.3 1.7E+02 0.0037 28.1 8.7 65 43-115 17-87 (266)
358 cd06366 PBP1_GABAb_receptor Li 39.1 4.2E+02 0.0091 27.0 12.1 58 43-104 151-217 (350)
359 PRK08883 ribulose-phosphate 3- 39.0 1.8E+02 0.0039 28.9 8.9 85 47-135 98-194 (220)
360 TIGR01305 GMP_reduct_1 guanosi 39.0 5.1E+02 0.011 27.9 12.5 102 31-135 121-240 (343)
361 PRK00025 lpxB lipid-A-disaccha 38.9 3.7E+02 0.008 27.8 11.7 105 32-153 221-341 (380)
362 PRK09860 putative alcohol dehy 38.8 1.7E+02 0.0038 31.3 9.4 64 32-100 32-108 (383)
363 cd02801 DUS_like_FMN Dihydrour 38.8 3.4E+02 0.0074 26.2 10.8 91 39-134 107-211 (231)
364 COG5012 Predicted cobalamin bi 38.6 89 0.0019 31.5 6.5 92 41-137 118-214 (227)
365 PRK15490 Vi polysaccharide bio 38.5 6.1E+02 0.013 29.2 13.8 103 31-148 429-533 (578)
366 PF13380 CoA_binding_2: CoA bi 38.5 30 0.00065 30.7 3.0 88 38-130 10-103 (116)
367 cd04949 GT1_gtfA_like This fam 38.5 3E+02 0.0066 28.1 10.9 66 78-153 279-345 (372)
368 PLN02460 indole-3-glycerol-pho 38.4 4.3E+02 0.0094 28.3 12.0 91 43-136 218-317 (338)
369 PF00977 His_biosynth: Histidi 38.4 1.3E+02 0.0028 29.9 7.8 69 63-135 148-219 (229)
370 COG0159 TrpA Tryptophan syntha 38.3 1.2E+02 0.0026 31.3 7.6 52 91-144 80-137 (265)
371 PLN02935 Bifunctional NADH kin 38.3 4.3E+02 0.0094 29.9 12.4 111 20-154 187-319 (508)
372 TIGR01306 GMP_reduct_2 guanosi 38.2 1.6E+02 0.0035 31.2 8.7 93 23-135 71-164 (321)
373 PRK14967 putative methyltransf 38.2 3.7E+02 0.0079 26.2 10.9 49 32-85 60-109 (223)
374 PRK06731 flhF flagellar biosyn 38.1 3.3E+02 0.0072 28.0 10.9 54 31-85 103-162 (270)
375 cd06388 PBP1_iGluR_AMPA_GluR4 38.1 2.4E+02 0.0051 30.0 10.2 56 45-104 141-203 (371)
376 PLN02589 caffeoyl-CoA O-methyl 38.1 2.4E+02 0.0053 28.6 9.8 56 31-86 104-165 (247)
377 cd04731 HisF The cyclase subun 38.0 1.1E+02 0.0023 30.4 7.2 71 61-136 26-100 (243)
378 TIGR01133 murG undecaprenyldip 37.9 4.4E+02 0.0096 26.6 13.3 93 45-152 222-320 (348)
379 PRK08857 para-aminobenzoate sy 37.8 40 0.00086 32.4 3.9 75 34-114 2-79 (193)
380 TIGR00734 hisAF_rel hisA/hisF 37.8 1.9E+02 0.0042 28.6 8.9 68 63-135 142-212 (221)
381 cd02940 DHPD_FMN Dihydropyrimi 37.6 2.2E+02 0.0048 29.4 9.6 41 93-134 239-279 (299)
382 PLN02316 synthase/transferase 37.6 4.1E+02 0.009 32.7 13.0 112 31-153 869-998 (1036)
383 TIGR01815 TrpE-clade3 anthrani 37.6 1.2E+02 0.0025 35.8 8.2 79 29-114 514-595 (717)
384 COG1171 IlvA Threonine dehydra 37.6 4.3E+02 0.0093 28.5 11.8 105 19-129 109-223 (347)
385 COG1568 Predicted methyltransf 37.5 35 0.00076 35.7 3.5 66 16-84 160-228 (354)
386 cd06348 PBP1_ABC_ligand_bindin 37.3 4E+02 0.0087 27.1 11.5 73 42-120 152-231 (344)
387 TIGR03407 urea_ABC_UrtA urea A 37.2 2.3E+02 0.005 29.5 9.8 78 32-113 135-224 (359)
388 cd06279 PBP1_LacI_like_3 Ligan 37.1 1.5E+02 0.0032 29.3 8.1 64 43-115 22-87 (283)
389 cd04737 LOX_like_FMN L-Lactate 37.0 3.5E+02 0.0076 29.0 11.2 71 61-136 229-305 (351)
390 cd06343 PBP1_ABC_ligand_bindin 37.0 3.6E+02 0.0078 27.7 11.2 78 32-115 145-233 (362)
391 TIGR01302 IMP_dehydrog inosine 36.9 5.1E+02 0.011 28.5 12.8 103 30-136 235-356 (450)
392 COG0269 SgbH 3-hexulose-6-phos 36.9 3.9E+02 0.0085 26.9 10.7 114 32-149 84-210 (217)
393 PRK01362 putative translaldola 36.8 2.3E+02 0.005 28.2 9.2 85 49-137 95-185 (214)
394 cd06345 PBP1_ABC_ligand_bindin 36.7 4.2E+02 0.009 27.0 11.6 79 32-116 145-234 (344)
395 PRK00726 murG undecaprenyldiph 36.4 4.9E+02 0.011 26.7 13.0 65 78-153 253-324 (357)
396 cd02810 DHOD_DHPD_FMN Dihydroo 36.2 3.2E+02 0.0069 27.7 10.5 40 93-133 230-269 (289)
397 cd08186 Fe-ADH8 Iron-containin 36.1 1.7E+02 0.0038 31.2 8.9 64 32-100 27-104 (383)
398 PRK07807 inosine 5-monophospha 36.1 2E+02 0.0044 32.1 9.6 106 23-133 171-293 (479)
399 PRK02645 ppnK inorganic polyph 35.9 2.3E+02 0.0049 29.6 9.4 103 32-153 4-115 (305)
400 cd04724 Tryptophan_synthase_al 35.9 3.7E+02 0.008 26.9 10.7 107 24-136 94-215 (242)
401 PF13941 MutL: MutL protein 35.9 2.3E+02 0.005 31.6 9.8 132 21-156 62-212 (457)
402 PRK04338 N(2),N(2)-dimethylgua 35.9 2.4E+02 0.0053 30.4 9.9 78 32-119 82-162 (382)
403 cd06273 PBP1_GntR_like_1 This 35.9 2E+02 0.0044 27.7 8.7 63 44-115 18-86 (268)
404 cd03313 enolase Enolase: Enola 35.7 2.8E+02 0.006 30.2 10.4 109 38-148 210-347 (408)
405 PRK13111 trpA tryptophan synth 35.7 4.1E+02 0.0089 27.1 11.1 98 34-137 121-229 (258)
406 PRK14075 pnk inorganic polypho 35.7 3.3E+02 0.0072 27.6 10.4 85 39-153 10-94 (256)
407 PRK13170 hisH imidazole glycer 35.6 71 0.0015 30.9 5.3 44 32-83 1-44 (196)
408 TIGR02149 glgA_Coryne glycogen 35.6 4.4E+02 0.0095 27.0 11.6 107 32-152 230-351 (388)
409 PLN02781 Probable caffeoyl-CoA 35.6 1.5E+02 0.0032 29.5 7.7 56 31-86 93-153 (234)
410 TIGR01302 IMP_dehydrog inosine 35.4 1.6E+02 0.0034 32.5 8.5 65 64-134 226-291 (450)
411 cd06336 PBP1_ABC_ligand_bindin 35.3 3.2E+02 0.007 28.1 10.5 81 32-118 139-231 (347)
412 cd06358 PBP1_NHase Type I peri 35.3 2.6E+02 0.0057 28.4 9.8 78 32-115 133-221 (333)
413 cd06349 PBP1_ABC_ligand_bindin 35.2 5E+02 0.011 26.4 11.8 85 32-122 136-231 (340)
414 cd00381 IMPDH IMPDH: The catal 34.9 1.9E+02 0.0042 30.4 8.8 55 78-135 107-162 (325)
415 cd08170 GlyDH Glycerol dehydro 34.7 2E+02 0.0043 30.2 8.9 76 31-114 22-108 (351)
416 cd08189 Fe-ADH5 Iron-containin 34.7 3.1E+02 0.0067 29.2 10.4 64 32-100 27-103 (374)
417 PF13433 Peripla_BP_5: Peripla 34.5 1.5E+02 0.0033 31.9 8.0 84 27-114 129-225 (363)
418 cd08176 LPO Lactadehyde:propan 34.4 2.9E+02 0.0062 29.5 10.2 64 32-100 29-105 (377)
419 COG0626 MetC Cystathionine bet 34.4 2.2E+02 0.0047 31.2 9.2 102 27-134 98-205 (396)
420 cd04736 MDH_FMN Mandelate dehy 34.1 3.1E+02 0.0067 29.6 10.2 72 61-138 244-321 (361)
421 PRK09134 short chain dehydroge 34.0 2.3E+02 0.005 27.6 8.8 39 23-61 1-39 (258)
422 PF01081 Aldolase: KDPG and KH 34.0 1.6E+02 0.0034 29.0 7.4 61 82-146 36-96 (196)
423 PRK04128 1-(5-phosphoribosyl)- 33.9 1.8E+02 0.0039 29.0 8.0 66 63-135 144-210 (228)
424 cd06340 PBP1_ABC_ligand_bindin 33.7 5.4E+02 0.012 26.4 12.9 76 32-113 145-231 (347)
425 cd01575 PBP1_GntR Ligand-bindi 33.5 2.6E+02 0.0057 26.8 9.0 63 44-115 18-86 (268)
426 COG4262 Predicted spermidine s 33.4 2.8E+02 0.0061 30.4 9.5 70 31-102 313-396 (508)
427 cd06327 PBP1_SBP_like_1 Peripl 33.2 3E+02 0.0065 28.0 9.8 78 31-112 135-223 (334)
428 TIGR01163 rpe ribulose-phospha 33.2 3.9E+02 0.0084 25.4 10.0 56 91-149 43-99 (210)
429 PF03830 PTSIIB_sorb: PTS syst 33.1 1.1E+02 0.0023 28.7 5.9 58 13-73 10-70 (151)
430 PRK10742 putative methyltransf 33.1 2.7E+02 0.0058 28.6 9.0 57 31-90 110-177 (250)
431 PRK06849 hypothetical protein; 33.1 3.4E+02 0.0073 28.8 10.4 81 31-115 4-84 (389)
432 TIGR01304 IMP_DH_rel_2 IMP deh 33.0 6.4E+02 0.014 27.3 12.4 65 63-134 143-214 (369)
433 PRK08185 hypothetical protein; 32.9 1.9E+02 0.0042 30.1 8.2 67 61-133 148-225 (283)
434 cd06292 PBP1_LacI_like_10 Liga 32.9 2.1E+02 0.0045 27.8 8.2 67 43-115 17-91 (273)
435 PF08415 NRPS: Nonribosomal pe 32.8 56 0.0012 25.4 3.3 30 89-118 3-34 (58)
436 PRK13561 putative diguanylate 32.7 3.9E+02 0.0084 30.3 11.4 101 43-146 535-646 (651)
437 cd03812 GT1_CapH_like This fam 32.6 4.8E+02 0.01 26.0 11.1 108 31-154 223-332 (358)
438 cd06341 PBP1_ABC_ligand_bindin 32.6 5.4E+02 0.012 26.1 11.9 71 44-120 150-227 (341)
439 cd04509 PBP1_ABC_transporter_G 32.6 4.5E+02 0.0098 25.1 12.4 23 91-113 203-225 (299)
440 PRK11596 cyclic-di-GMP phospho 32.4 2.9E+02 0.0063 27.4 9.3 97 49-148 147-253 (255)
441 PRK13695 putative NTPase; Prov 32.2 2.8E+02 0.006 25.7 8.6 73 77-151 96-172 (174)
442 cd03820 GT1_amsD_like This fam 32.2 4.7E+02 0.01 25.2 12.7 108 31-152 209-318 (348)
443 cd06268 PBP1_ABC_transporter_L 32.2 4.6E+02 0.0099 25.1 12.7 83 32-120 136-229 (298)
444 cd08191 HHD 6-hydroxyhexanoate 32.2 2.5E+02 0.0054 30.1 9.3 70 26-100 17-99 (386)
445 TIGR03499 FlhF flagellar biosy 32.1 1.2E+02 0.0026 31.1 6.6 53 32-85 225-280 (282)
446 TIGR03590 PseG pseudaminic aci 31.9 4.6E+02 0.01 26.6 10.8 76 31-117 31-113 (279)
447 cd06281 PBP1_LacI_like_5 Ligan 31.9 3E+02 0.0066 26.7 9.2 66 43-116 17-88 (269)
448 PRK07107 inosine 5-monophospha 31.9 3E+02 0.0065 30.9 10.1 103 31-136 254-381 (502)
449 PRK14076 pnk inorganic polypho 31.9 3.7E+02 0.008 30.6 11.0 105 30-154 289-405 (569)
450 cd08551 Fe-ADH iron-containing 31.9 2.6E+02 0.0057 29.5 9.3 64 32-100 24-100 (370)
451 PF04131 NanE: Putative N-acet 31.8 1.4E+02 0.0031 29.4 6.5 70 55-135 45-117 (192)
452 COG1922 WecG Teichoic acid bio 31.6 2.6E+02 0.0057 28.7 8.8 72 19-92 93-176 (253)
453 cd06332 PBP1_aromatic_compound 31.6 5.4E+02 0.012 25.7 11.7 53 63-119 174-226 (333)
454 PRK05286 dihydroorotate dehydr 31.6 3.5E+02 0.0076 28.6 10.1 59 93-152 276-341 (344)
455 PRK00654 glgA glycogen synthas 31.6 6.3E+02 0.014 27.5 12.5 108 31-152 311-427 (466)
456 cd06318 PBP1_ABC_sugar_binding 31.6 2.4E+02 0.0051 27.5 8.4 64 44-115 18-88 (282)
457 cd01571 NAPRTase_B Nicotinate 31.4 5E+02 0.011 27.1 11.0 68 64-133 198-270 (302)
458 TIGR00735 hisF imidazoleglycer 31.3 2.3E+02 0.005 28.5 8.4 72 61-136 29-103 (254)
459 COG1091 RfbD dTDP-4-dehydrorha 31.3 1.1E+02 0.0023 31.9 6.0 58 32-92 1-65 (281)
460 cd06267 PBP1_LacI_sugar_bindin 31.3 3.5E+02 0.0075 25.5 9.3 63 45-116 19-87 (264)
461 PRK00955 hypothetical protein; 31.3 3.2E+02 0.0069 31.7 10.3 119 21-151 9-178 (620)
462 PTZ00170 D-ribulose-5-phosphat 31.3 1.3E+02 0.0028 29.9 6.5 88 45-135 104-200 (228)
463 cd03794 GT1_wbuB_like This fam 31.2 5E+02 0.011 25.5 10.8 108 31-152 250-364 (394)
464 cd06375 PBP1_mGluR_groupII Lig 31.2 3E+02 0.0064 30.1 9.8 101 44-149 191-303 (458)
465 PRK14607 bifunctional glutamin 31.2 65 0.0014 36.3 4.8 77 33-114 1-80 (534)
466 PRK05282 (alpha)-aspartyl dipe 31.0 3.2E+02 0.0069 27.6 9.2 64 31-102 31-100 (233)
467 cd06295 PBP1_CelR Ligand bindi 31.0 2.6E+02 0.0056 27.2 8.6 63 43-115 28-95 (275)
468 cd08178 AAD_C C-terminal alcoh 30.8 2.2E+02 0.0047 30.6 8.6 64 32-100 22-98 (398)
469 COG1748 LYS9 Saccharopine dehy 30.5 4.6E+02 0.01 28.6 10.8 91 32-131 2-94 (389)
470 cd01541 PBP1_AraR Ligand-bindi 30.5 2.9E+02 0.0064 26.8 8.9 68 42-115 16-91 (273)
471 cd04726 KGPDC_HPS 3-Keto-L-gul 30.4 1.7E+02 0.0038 27.7 7.1 73 62-138 10-86 (202)
472 TIGR02634 xylF D-xylose ABC tr 30.3 2.2E+02 0.0047 28.8 8.1 67 42-115 15-87 (302)
473 cd03798 GT1_wlbH_like This fam 30.3 5.2E+02 0.011 25.1 11.3 108 31-153 233-344 (377)
474 PRK10624 L-1,2-propanediol oxi 30.3 1.8E+02 0.004 31.0 7.9 63 32-99 31-106 (382)
475 cd01836 FeeA_FeeB_like SGNH_hy 30.3 3.2E+02 0.007 25.3 8.7 83 31-115 2-114 (191)
476 cd08183 Fe-ADH2 Iron-containin 30.2 2.9E+02 0.0063 29.4 9.3 65 31-100 22-95 (374)
477 cd01537 PBP1_Repressors_Sugar_ 30.2 3.2E+02 0.0069 25.7 8.9 68 42-117 16-89 (264)
478 PRK10415 tRNA-dihydrouridine s 30.1 4E+02 0.0087 27.9 10.2 103 36-143 114-237 (321)
479 cd06360 PBP1_alkylbenzenes_lik 30.0 5.8E+02 0.013 25.6 14.3 79 32-114 135-224 (336)
480 TIGR03471 HpnJ hopanoid biosyn 30.0 2E+02 0.0044 31.6 8.3 95 41-144 34-134 (472)
481 PLN02819 lysine-ketoglutarate 30.0 5.9E+02 0.013 31.5 12.7 113 30-152 568-694 (1042)
482 cd08182 HEPD Hydroxyethylphosp 29.9 2.4E+02 0.0053 29.8 8.7 65 32-101 24-98 (367)
483 PRK04148 hypothetical protein; 29.8 2.8E+02 0.0062 25.6 7.9 59 31-93 17-75 (134)
484 PRK05234 mgsA methylglyoxal sy 29.8 1.9E+02 0.0041 26.8 6.9 38 32-69 5-46 (142)
485 PRK15454 ethanol dehydrogenase 29.8 2E+02 0.0043 31.1 8.0 64 32-100 50-126 (395)
486 PRK06106 nicotinate-nucleotide 29.8 6.6E+02 0.014 26.2 11.5 67 58-134 198-264 (281)
487 cd06323 PBP1_ribose_binding Pe 29.8 3E+02 0.0066 26.3 8.8 63 45-116 19-89 (268)
488 cd06272 PBP1_hexuronate_repres 29.8 2.7E+02 0.0059 26.8 8.5 62 45-115 19-82 (261)
489 cd00405 PRAI Phosphoribosylant 29.7 2.9E+02 0.0064 26.5 8.5 52 77-134 120-179 (203)
490 cd08194 Fe-ADH6 Iron-containin 29.7 2.9E+02 0.0062 29.4 9.2 64 32-100 24-100 (375)
491 cd03316 MR_like Mandelate race 29.5 2.6E+02 0.0057 29.2 8.8 97 42-143 174-277 (357)
492 PRK01395 V-type ATP synthase s 29.5 1.9E+02 0.0042 25.4 6.5 53 30-87 2-55 (104)
493 PRK12653 fructose-6-phosphate 29.5 5E+02 0.011 25.9 10.3 84 49-136 97-187 (220)
494 PRK01033 imidazole glycerol ph 29.4 1.7E+02 0.0037 29.6 7.1 69 63-135 153-225 (258)
495 PRK05096 guanosine 5'-monophos 29.2 3.1E+02 0.0066 29.5 9.0 54 77-133 122-176 (346)
496 TIGR00737 nifR3_yhdG putative 29.1 5.6E+02 0.012 26.6 11.1 94 37-135 113-221 (319)
497 cd03817 GT1_UGDG_like This fam 29.1 5.6E+02 0.012 25.1 11.8 108 30-153 232-343 (374)
498 PRK03692 putative UDP-N-acetyl 29.1 3.8E+02 0.0082 27.2 9.4 75 31-112 105-187 (243)
499 cd03795 GT1_like_4 This family 29.0 5.8E+02 0.013 25.3 13.6 110 31-153 218-332 (357)
500 cd05014 SIS_Kpsf KpsF-like pro 29.0 2E+02 0.0043 25.0 6.7 88 40-138 11-100 (128)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.88 E-value=1.1e-21 Score=194.37 Aligned_cols=120 Identities=28% Similarity=0.478 Sum_probs=113.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++|||||||+..+..|...|+..||+|..+.++.+|++.+.. . ||+||+|++||++||+++|++||+. ....+|||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~-~~~~~PIi 76 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAK-KGSGPPII 76 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhh-cCCCCcEE
Confidence 489999999999999999999999999999999999999975 3 9999999999999999999999965 45678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|+|+.++....+.++++||+|||+|||.+.||..+|+.+++|..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 99999999999999999999999999999999999999998864
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.83 E-value=5.9e-20 Score=196.95 Aligned_cols=121 Identities=26% Similarity=0.518 Sum_probs=114.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+.+|||||||+.+|..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||++||++++++|++.. +++|
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~--~~~p 78 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRD--PDLP 78 (464)
T ss_pred CcCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhC--CCCC
Confidence 4568999999999999999999999999999999999999998764 99999999999999999999998875 8999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||+||++.+.+.+++|++.||.|||.|||+.+.|...+++++...
T Consensus 79 VI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 79 VIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998754
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.83 E-value=4.1e-20 Score=198.00 Aligned_cols=120 Identities=24% Similarity=0.480 Sum_probs=111.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHH--hCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLR--KSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~--~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|.+||||||++.+|+.|+.++. .+|++|+. |.+|.+||+++.+.. |||||+|++||+|||+++++.+++.. |+
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~--p~ 76 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQS--PD 76 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 4799999999999999999985 56998665 899999999999876 99999999999999999999998854 89
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+.+||+|++++.+.+.+|+.+|+.|||+||++..+|..+|.++....
T Consensus 77 ~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 77 TEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred ceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887554
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.81 E-value=3.2e-19 Score=169.49 Aligned_cols=121 Identities=22% Similarity=0.388 Sum_probs=111.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..-|.|||||..+|+.+..+|+..||++.++.++.+.|..... ..|-++|+|+.||+|+|+++..+|.+.. ..+||
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~--~~~PV 79 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERG--IRLPV 79 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcC--CCCCE
Confidence 3578999999999999999999999999999999999998544 3489999999999999999999998876 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||+|++++..+.+++|+.||.|||.|||+...|..++++++.+..
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~ 124 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDA 124 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987653
No 5
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.79 E-value=3.8e-18 Score=146.36 Aligned_cols=111 Identities=34% Similarity=0.624 Sum_probs=105.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIi 112 (527)
||||||++..+..++.+|+..|| .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+... +.+|||+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~--~~~~ii~ 76 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQIN--PSIPIIV 76 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHT--TTSEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeecccccccccccccccc--ccccEEE
Confidence 79999999999999999999999 8999999999999998866 99999999999999999999998765 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
+|...+.....+++++|+++||.||++.++|..+|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 999999999999999999999999999999998874
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=9.2e-18 Score=162.31 Aligned_cols=122 Identities=20% Similarity=0.371 Sum_probs=111.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKS-SYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++|||||||+.+.+.-+.+++.. ||.++. +.++++|...++... |||||+|+-||+.+|++++..|+... ..+-
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~--~~~D 76 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQH--YPVD 76 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcC--CCCC
Confidence 58999999999999999999875 898665 889999999998765 89999999999999999999999875 4678
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhccc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~ 157 (527)
||++|+-.+.+.+.+++..||.|||.|||..+.|..+|.+..+++...
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766443
No 7
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.75 E-value=8.3e-18 Score=179.28 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=144.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
...+||||||+...+..++.+|...||+|..+.++.+|+..+.+.+ ||+||+|+.||++||++++.++|.......+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 4589999999999999999999999999999999999999998765 99999999999999999999999988888999
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhccccCCCccccchhhhHHHHHhhcccccccccchh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGY 189 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 189 (527)
||++++.++.....+|++.|++|||.||+...+|..++++.+++.+.. +.+........ .....+.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~-------------~~L~~~~~~~~-~l~~~D~ 274 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE-------------RQLRESLERLQ-ELALVDG 274 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH-------------HHHHHHHHHHH-Hhhcccc
Confidence 999999999999999999999999999999999999988888776432 01111111100 0122445
Q ss_pred hHhhhcchhHhhcCccccccCCCCcccccccCCCCchhHHHH
Q 009734 190 MACIQSKGEFIEKGSDEQSSCTKPDFEAESAHVEDMPDLSRQ 231 (527)
Q Consensus 190 l~~l~~~~~~~e~gs~~~ss~~~~~~e~e~i~~dd~~~~~~~ 231 (527)
++.+.+++.|.+..........+. .+.-++.|-|++.|+.-
T Consensus 275 LTGL~NRR~~~~~L~~~~~ra~~~-~~pls~~m~DID~FK~i 315 (435)
T COG3706 275 LTGLFNRRYFDEHLADLWKRALRE-GRPLSLLMLDIDDFKEI 315 (435)
T ss_pred ccCcccHHHHHHHHHHHHHHHHhc-CCCeeEEEEeccccccc
Confidence 677888887777766655443333 22223345566655543
No 8
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=1e-17 Score=172.57 Aligned_cols=119 Identities=29% Similarity=0.487 Sum_probs=112.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh-cccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME-HEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~-~~~~~~iP 109 (527)
.++||+|||.+..+..++.+|+..||+|..+.+|++|++++...+ +|+||+|++||+|||+++|.+|+. .+.+..||
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip 91 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIP 91 (360)
T ss_pred cceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccccc
Confidence 589999999999999999999999999999999999999998766 999999999999999999999998 77788899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
||++|++.+.+...+++..||+|||.|||++.+|..++...+
T Consensus 92 ~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~ 133 (360)
T COG3437 92 VILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHL 133 (360)
T ss_pred eEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999886554
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-16 Score=139.91 Aligned_cols=120 Identities=32% Similarity=0.550 Sum_probs=105.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGL-KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~-eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
...+||+|||++..+..+..+|...|+.|..+.++. +|++.++... .||+|++|+.||++||++++++|+.. .+.+
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~--~~~~ 80 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRAR--GPNI 80 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhC--CCCC
Confidence 458999999999999999999999999999999995 9999998651 39999999999999999999999876 3578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~ee-L~~~L~~v~r 152 (527)
|||++|++.......+++..|+++||.||+...+ |..++.+++.
T Consensus 81 pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 81 PVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred CEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 8899999998887778899999999999977777 7777775543
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.72 E-value=1e-16 Score=156.84 Aligned_cols=121 Identities=21% Similarity=0.379 Sum_probs=110.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSS-YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~G-y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||||||++.+|..|+.+|...+ ++|+. +.++.++++.++... ||+||+|+.||+++|+++++.|++. .++++
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~--~p~~~ 76 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRAR--GPDIK 76 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHH--CCCCc
Confidence 479999999999999999998764 88665 778999999987655 9999999999999999999999954 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|.+++...+.+++.+||++|+.|..+.++|..+|+.++.+...
T Consensus 77 vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~ 123 (211)
T COG2197 77 VVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTY 123 (211)
T ss_pred EEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeE
Confidence 99999999999999999999999999999999999999999876644
No 11
>PLN03029 type-a response regulator protein; Provisional
Probab=99.70 E-value=4.5e-16 Score=153.12 Aligned_cols=125 Identities=33% Similarity=0.591 Sum_probs=111.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC------------------CCceEEEEeCCCCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP------------------RNIDLILTEVDLPSIS 91 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~------------------~~pDLVLlDl~MP~mD 91 (527)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3589999999999999999999999999999999999999886432 1267999999999999
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|+++++.|++......+|||++|+........+++..|+++||.||+...+|..++.++++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 999999999865556899999999999999999999999999999999999988877766443
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.70 E-value=5.9e-16 Score=151.22 Aligned_cols=122 Identities=20% Similarity=0.318 Sum_probs=109.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++.++..+..+|+. .|+. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~--~~~ 79 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAH--YPG 79 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcC--CCC
Confidence 48999999999999999999986 4785 567999999999998755 99999999999999999999998753 467
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+||++|+..+...+.+++..||++||.||++.++|..+|+++..+...
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765543
No 13
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.69 E-value=7.4e-16 Score=148.15 Aligned_cols=122 Identities=29% Similarity=0.430 Sum_probs=112.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..+...|+..||++..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 m~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~p 78 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIP 78 (229)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCC
Confidence 5679999999999999999999999999999999999999887644 99999999999999999999998754446789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++++..+.....+++.+||++||.||++..+|..+++.++++
T Consensus 79 vi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 79 VVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988766
No 14
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.68 E-value=1.2e-15 Score=144.80 Aligned_cols=123 Identities=31% Similarity=0.471 Sum_probs=112.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.....+.+|
T Consensus 1 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ 78 (226)
T TIGR02154 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIP 78 (226)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCC
Confidence 4578999999999999999999999999999999999999987654 99999999999999999999998754446789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++++..+.....+++..||++||.||++.++|..+++.++++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 79 IIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999887664
No 15
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.68 E-value=1.2e-15 Score=146.23 Aligned_cols=119 Identities=24% Similarity=0.408 Sum_probs=110.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|+||||||++..+..+...|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++... +.+|||
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~--~~~pii 76 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 48999999999999999999999999999999999999887654 99999999999999999999998753 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+......++..||++||.||++..+|..+++.++++.
T Consensus 77 ~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887664
No 16
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.68 E-value=1.2e-15 Score=146.00 Aligned_cols=118 Identities=27% Similarity=0.391 Sum_probs=109.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~pvi 76 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQW---SAIPVI 76 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 68999999999999999999999999999999999999887644 9999999999999999999999864 478999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+.....+++.+||++||.||++..+|..+++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999887664
No 17
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.68 E-value=1.4e-15 Score=145.24 Aligned_cols=120 Identities=23% Similarity=0.420 Sum_probs=111.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|.++||||||++..+..+...|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 1 ~~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~~ 75 (221)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSR---STVG 75 (221)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhC---CCCC
Confidence 5679999999999999999999999999999999999999887654 9999999999999999999999864 4789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++++..+.....+++..||+|||.||++..+|..+++.++++.
T Consensus 76 ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 76 IILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred EEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999888764
No 18
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.67 E-value=1.7e-15 Score=145.36 Aligned_cols=119 Identities=25% Similarity=0.494 Sum_probs=109.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|+||||||++..+..+...|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++... +.+|||
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~--~~~pii 76 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSAN--KGMPIL 76 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 38999999999999999999999999999999999999887654 99999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+......++.+||++||.||++..+|..+++.++++.
T Consensus 77 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (227)
T PRK09836 77 LLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (227)
T ss_pred EEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887653
No 19
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.67 E-value=2.3e-15 Score=142.77 Aligned_cols=119 Identities=25% Similarity=0.415 Sum_probs=110.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..+..+|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~--~~~pii 76 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKK--YTLPVL 76 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 48999999999999999999999999999999999999887654 99999999999999999999998653 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+......++..||++||.||++.++|..+++.++++.
T Consensus 77 ~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 77 ILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887654
No 20
>PRK11173 two-component response regulator; Provisional
Probab=99.66 E-value=2.6e-15 Score=145.78 Aligned_cols=118 Identities=24% Similarity=0.443 Sum_probs=109.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+...|+..||.|..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~---~~~pii 78 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQ---ANVALM 78 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcC---CCCCEE
Confidence 58999999999999999999999999999999999999987654 9999999999999999999999864 468999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+......++..||++||.||++..+|..+++.++++.
T Consensus 79 ~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 79 FLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988764
No 21
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.65 E-value=4.3e-15 Score=140.83 Aligned_cols=119 Identities=26% Similarity=0.417 Sum_probs=109.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..+..+|+..|+++..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~--~~~~ii 76 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKG--QREPVL 76 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCcEE
Confidence 48999999999999999999999999999999999999887644 99999999999999999999998743 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|+..+......++..||++||.||++.++|..+++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 77 ILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred EEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887654
No 22
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.65 E-value=4.1e-15 Score=146.40 Aligned_cols=121 Identities=21% Similarity=0.368 Sum_probs=106.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||||||++.++..+..+|.. .++.++ .+.++.++++.+......||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~--~~~~ 79 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAG--CKSD 79 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhC--CCCC
Confidence 6999999999999999999986 477655 57899999998863223499999999999999999999998753 6889
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....+++..|+++||.||++.++|..+|.+++.+.
T Consensus 80 vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 80 VIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876543
No 23
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.65 E-value=4.6e-15 Score=143.79 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=111.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
...+||||||++..+..+...|+..||++..+.++.++++.+.... ||+||+|+.||+++|+++++.|+... +.+|
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~--~~~p 79 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQN--NPTP 79 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 3468999999999999999999999999999999999999987654 99999999999999999999998753 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++++..+......++..|+++||.||++.++|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 80 IIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999988764
No 24
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.65 E-value=2.2e-15 Score=138.72 Aligned_cols=115 Identities=18% Similarity=0.335 Sum_probs=108.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
...||||||..+...|+..|+.-||.|..+.+..+|+..++... |.-.++|+.|.+.+|+.+++.|++.. ++..||
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~--~d~riv 85 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERR--ADMRIV 85 (182)
T ss_pred ceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcC--CcceEE
Confidence 36899999999999999999999999999999999999999866 99999999999999999999999875 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
++|++.++..+++|+++||++||.||-+.+++..++.+-
T Consensus 86 vLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~ 124 (182)
T COG4567 86 VLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRR 124 (182)
T ss_pred EEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhc
Confidence 999999999999999999999999999999998777653
No 25
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.64 E-value=5.5e-15 Score=143.56 Aligned_cols=118 Identities=24% Similarity=0.335 Sum_probs=108.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~---~~~pii 76 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPK---WQGPIV 76 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 58999999999999999999999999999999999999987654 9999999999999999999999873 367999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+......++..|++|||.||+...+|..+++.++++.
T Consensus 77 ~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 77 LLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999988888889999999999999999999999999888764
No 26
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.64 E-value=6.5e-15 Score=140.19 Aligned_cols=120 Identities=28% Similarity=0.473 Sum_probs=110.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~i 78 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFH--PALPV 78 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 369999999999999999999999999999999999999887644 99999999999999999999998753 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++++..+......++..||++||.||++..+|..+++.++++.
T Consensus 79 i~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 79 IFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999999888999999999999999999999999999887654
No 27
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.64 E-value=6.4e-15 Score=141.14 Aligned_cols=117 Identities=30% Similarity=0.475 Sum_probs=107.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+...|+..||.+..+.++.+++..+.. .||+||+|+.||+++|+++++.|+... + +|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~--~-~~ii 75 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTH--Q-TPVI 75 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcC--C-CcEE
Confidence 589999999999999999999999999999999999998853 399999999999999999999998753 3 8999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|+..+......+++.||++||.||++..+|..+++.++++.
T Consensus 76 ~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 76 MLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888764
No 28
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.63 E-value=8.2e-15 Score=143.11 Aligned_cols=118 Identities=21% Similarity=0.408 Sum_probs=106.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+...|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~---~~~pii 76 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATK---SDVPII 76 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCcEE
Confidence 48999999999999999999999999999999999999887654 9999999999999999999999864 468999
Q ss_pred EEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~-~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++. .+.....+++.+||++||.||++..+|..+++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred EEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 99985 46677789999999999999999999999999888764
No 29
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.63 E-value=1.1e-14 Score=139.59 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=108.8
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeE
Q 009734 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPV 110 (527)
+||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.|+... +.+||
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~--~~~pi 77 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLS--ATLPI 77 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 6999999999999999999999999999999999999987654 999999999998 58999999998753 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+......++.+||++||.||++..+|..+++.++++.
T Consensus 78 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 78 IFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988764
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.63 E-value=1.1e-14 Score=138.58 Aligned_cols=118 Identities=31% Similarity=0.488 Sum_probs=108.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|+||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~---~~~~ii 75 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTA---KQTPVI 75 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcC---CCCCEE
Confidence 48999999999999999999999999999999999999887654 9999999999999999999999864 368999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++..+.....+++.+||++||.||++..+|..+++.++++.
T Consensus 76 ~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 76 CLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999887654
No 31
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.62 E-value=1.5e-14 Score=139.39 Aligned_cols=120 Identities=27% Similarity=0.491 Sum_probs=110.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.+++||||||++..+..+...|+..||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~---~~~~ 79 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKE---SDVP 79 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCc
Confidence 3579999999999999999999999999998999999999887654 9999999999999999999999864 4789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||+++++.+......++..||++||.||++.++|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999887654
No 32
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.62 E-value=2.5e-15 Score=172.26 Aligned_cols=120 Identities=25% Similarity=0.491 Sum_probs=111.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
...+||||||++..+...+.+|++.|.+++++.+|.+|++.+.. ...||+||+|++||.|||+++.++||+... ..+|
T Consensus 665 ~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~-~~~p 742 (786)
T KOG0519|consen 665 TGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKER-WHLP 742 (786)
T ss_pred cCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhc-CCCC
Confidence 35799999999999999999999999999999999999999972 345999999999999999999999998754 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
||.||+........+|++.|+++||.|||+.+.|+..+++++
T Consensus 743 IvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 743 IVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred EEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888765
No 33
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.62 E-value=5.8e-15 Score=170.13 Aligned_cols=122 Identities=25% Similarity=0.416 Sum_probs=113.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..++.+|+..|+.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|++....+.+||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 579999999999999999999999999999999999999998755 999999999999999999999998655578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....+++..|+++||.||++..+|...|.+++...
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 788 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPGP 788 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcccc
Confidence 99999999999999999999999999999999999999886543
No 34
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.61 E-value=9.1e-15 Score=170.65 Aligned_cols=121 Identities=24% Similarity=0.433 Sum_probs=112.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+|+|+++++.|++.. +.+|
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~--~~~p 875 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLG--LTLP 875 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 3479999999999999999999999999999999999999998755 99999999999999999999999764 5799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+....+...++++.|+++||.||++..+|..+|.++..+.
T Consensus 876 II~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 876 VIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998876544
No 35
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.61 E-value=1.8e-14 Score=143.18 Aligned_cols=121 Identities=19% Similarity=0.347 Sum_probs=107.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
.++||||||++..+..+..+|... ++.++ .+.++.++++.+.... ||+||+|+.||++||+++++.|+.......+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 379999999999999999999864 56655 5899999999998755 9999999999999999999999876543448
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||++|+........+++..|+++||.||++..+|..+|++++..
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988654
No 36
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.60 E-value=1.2e-14 Score=167.83 Aligned_cols=121 Identities=21% Similarity=0.411 Sum_probs=111.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc--cCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE--ICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~--~~~~i 108 (527)
.++||||||++..+..+..+|+..||+|..+.++.+|++.++... ||+||+|+.||++||+++++.|++.. ..+.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 469999999999999999999999999999999999999998755 99999999999999999999998642 23679
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||++|+..+.....+++..|+++||.||++.++|..++.++...
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887643
No 37
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.60 E-value=3.2e-15 Score=150.29 Aligned_cols=117 Identities=22% Similarity=0.400 Sum_probs=106.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++|+|||||..+...|..+|.+.|..+..+....+|++.|+... |||||+|+.||+|+|++++++++.+. +.+|||
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~--~~v~ii 76 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPII 76 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhh--ccCcEE
Confidence 48999999999999999999999988888999999999998765 99999999999999999999999876 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|++. +....++.+.++|||+||++++.|-.+|.+..++.
T Consensus 77 fIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 77 FISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred EEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 999985 55667788888999999999999999999887654
No 38
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.60 E-value=2.8e-14 Score=134.34 Aligned_cols=119 Identities=15% Similarity=0.270 Sum_probs=108.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
|+||||||++..+..+...|+..|+.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++... +.+||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 76 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQ--YSGII 76 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeE
Confidence 4899999999999999999999999987 6899999999987654 99999999999999999999998753 57899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++++..+......++..|+++||.||++.++|..+++.+.++.
T Consensus 77 i~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 77 IIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999987553
No 39
>PRK09483 response regulator; Provisional
Probab=99.60 E-value=3e-14 Score=135.40 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=109.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
|++||||||++..+..+..+|+.. |+.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.|++. .+.+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~--~~~~ 76 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRY--TPDV 76 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHH--CCCC
Confidence 379999999999999999999874 88876 6899999999988654 9999999999999999999999764 3689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|||+++...+......++..|+++||.||++.++|..+++.++++..
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~ 123 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQR 123 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999876543
No 40
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.60 E-value=3.3e-14 Score=134.37 Aligned_cols=117 Identities=32% Similarity=0.490 Sum_probs=108.2
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
||||||++..+..+...|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+|||++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~--~~~~iivl 76 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFL 76 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccC--CCCcEEEE
Confidence 689999999999999999999999999999999999987654 99999999999999999999998653 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++..+......++..||++||.||++..+|..+++.++++.
T Consensus 77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999887654
No 41
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.59 E-value=8.4e-15 Score=154.27 Aligned_cols=119 Identities=24% Similarity=0.407 Sum_probs=108.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+..+|.. .+.+..+.++.+|+..+.... |||||+|+.||+++|+++++.|++....+.+||
T Consensus 155 ~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~i 231 (457)
T PRK09581 155 DGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYVPI 231 (457)
T ss_pred CceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCCcE
Confidence 46899999999999999999965 477778999999999887654 999999999999999999999997655678999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|++|++++.+.+.+|+..||+|||.||++.++|...|....+
T Consensus 232 i~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~ 273 (457)
T PRK09581 232 LLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIR 273 (457)
T ss_pred EEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988876554
No 42
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.59 E-value=3.5e-14 Score=137.24 Aligned_cols=120 Identities=11% Similarity=0.219 Sum_probs=107.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCC---CCHHHHHHHHHhcccCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY-R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS---ISGFALLTLVMEHEICK 106 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy-~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~---mDGlelL~~Lr~~~~~~ 106 (527)
++||||||++..+..++.+|+..++ . +..+.++.++++.+.... ||+||+|+.||+ ++|++++++|+.. .+
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~--~~ 79 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRH--FP 79 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHH--CC
Confidence 6999999999999999999987664 4 556899999999987654 999999999999 5999999999865 36
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
.+|||++|...+......+++.||++||.||+..++|..+|+.+..+..
T Consensus 80 ~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~ 128 (216)
T PRK10840 80 SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKK 128 (216)
T ss_pred CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCe
Confidence 7999999999999999999999999999999999999999998876543
No 43
>PRK15115 response regulator GlrR; Provisional
Probab=99.58 E-value=2.9e-14 Score=152.75 Aligned_cols=122 Identities=22% Similarity=0.442 Sum_probs=112.3
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+...+||||||++..+..+...|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+.. .+.+
T Consensus 3 ~~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~--~~~~ 78 (444)
T PRK15115 3 RKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKV--QPGM 78 (444)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhc--CCCC
Confidence 34589999999999999999999999999999999999999997654 9999999999999999999999865 3689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|||++|+..+.....+++..|+.+||.||++..+|..+++.++...
T Consensus 79 pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~~ 124 (444)
T PRK15115 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQS 124 (444)
T ss_pred cEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999887653
No 44
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.57 E-value=2.8e-14 Score=152.30 Aligned_cols=120 Identities=30% Similarity=0.484 Sum_probs=111.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..++||||||++..+..+..+|+..||.|..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+|
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~--~~~~ 79 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALN--PAIP 79 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCe
Confidence 3589999999999999999999999999999999999999987654 99999999999999999999998753 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++|++.+...+..++..|+.+||.||++.++|...+.+++.+
T Consensus 80 vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 80 VLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887654
No 45
>PRK14084 two-component response regulator; Provisional
Probab=99.57 E-value=6.4e-14 Score=137.47 Aligned_cols=117 Identities=20% Similarity=0.353 Sum_probs=101.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSS-Y-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~G-y-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||||||++..+..+..+|...+ + .+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +..+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~--~~~~ 76 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMK--EPPA 76 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCE
Confidence 589999999999999999998765 4 4667899999999987654 99999999999999999999998754 5678
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|++.. ...++++.|+.+||.||++.++|..+++++.++.
T Consensus 77 iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 77 IIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 999988754 5678999999999999999999999999887543
No 46
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.57 E-value=3.5e-14 Score=164.92 Aligned_cols=121 Identities=26% Similarity=0.371 Sum_probs=111.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC-Ce
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN-IP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~-iP 109 (527)
..+||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....... +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 468999999999999999999999999999999999999998754 999999999999999999999998653323 89
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++|++.......+++..|+++||.||++..+|...|.+++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 47
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.56 E-value=4e-14 Score=163.77 Aligned_cols=122 Identities=26% Similarity=0.334 Sum_probs=111.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+... ..||+||+|+.||++||+++++.|+.. .+.+|
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~--~~~~~ 756 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQ--YPSLV 756 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhh--CCCCC
Confidence 357999999999999999999999999999999999999988643 248999999999999999999999875 37899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|++.......+++..|+++||.||++.++|..+|.++++..
T Consensus 757 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 757 LIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999987654
No 48
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.56 E-value=8.3e-14 Score=150.39 Aligned_cols=118 Identities=25% Similarity=0.441 Sum_probs=110.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~--~~~pvI 79 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRH--PMLPVI 79 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhC--CCCeEE
Confidence 58999999999999999999999999999999999999998655 99999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
++|++.+......+++.|+.+||.||++..+|...+.+++..
T Consensus 80 vlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 80 IMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887654
No 49
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.55 E-value=1.2e-13 Score=129.13 Aligned_cols=115 Identities=27% Similarity=0.382 Sum_probs=103.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKS-SYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~-Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||||||++..+..+..+|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++ +.+|
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~-----~~~~ 74 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP-----KGMA 74 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc-----cCCC
Confidence 68999999999999999999754 666 456899999999987654 99999999999999999999985 2579
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||+++...+......++..|+++||.||++.++|..+|+.+.++
T Consensus 75 vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 75 TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998765
No 50
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.54 E-value=2e-13 Score=128.25 Aligned_cols=120 Identities=22% Similarity=0.397 Sum_probs=107.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+||||||++..+..+..+|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~--~~~ 78 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQ--STV 78 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhC--CCC
Confidence 468999999999999999999876 57876 5789999999887654 99999999999999999999998643 678
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|||++++..+......++..|+++|+.||++.++|..+++.++.+.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 79 KVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred cEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999887654
No 51
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.54 E-value=1.2e-13 Score=134.40 Aligned_cols=116 Identities=19% Similarity=0.388 Sum_probs=99.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G-y~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
|++||||||++..+..+..+|+..| +.+ ..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. ...
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~---~~~ 75 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPE---HMP 75 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhccc---CCC
Confidence 3799999999999999999999887 343 45889999999887644 9999999999999999999998532 234
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+||++|++. +.+.+++..||.+||.||++.++|...+.++.+.
T Consensus 76 ~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 76 YIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 788888875 4677999999999999999999999999888654
No 52
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.54 E-value=1.1e-13 Score=148.70 Aligned_cols=119 Identities=24% Similarity=0.468 Sum_probs=109.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+...|+..||+|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++... +.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~--~~~pv 79 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHE--TRTPV 79 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 468999999999999999999999999999999999999998654 99999999999999999999998653 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|++|++.+.....+++..|++|||.||++.++|...+++++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999998877643
No 53
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.54 E-value=8.1e-14 Score=159.10 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=107.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC-Ce
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN-IP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~-iP 109 (527)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||++||+++++.|++....+. +|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 479999999999999999999999999999999999999998654 999999999999999999999987643345 48
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+.... ...+++..|+++||.||++..+|...|++++...
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhccc
Confidence 9999987654 4678999999999999999999999999887543
No 54
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.54 E-value=2.4e-13 Score=128.75 Aligned_cols=119 Identities=26% Similarity=0.475 Sum_probs=108.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..+...|...|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++... +.+|||
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~--~~~~ii 76 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRG--QTLPVL 76 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCEE
Confidence 47999999999999999999999999999999999998887644 99999999999999999999998754 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+++...+.....+++..|+++||.||++..+|...++.++++.
T Consensus 77 ~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 77 LLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred EEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999887654
No 55
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.53 E-value=2.1e-13 Score=143.72 Aligned_cols=121 Identities=24% Similarity=0.385 Sum_probs=110.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+.+||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.....+.+||
T Consensus 2 ~~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~i 79 (457)
T PRK09581 2 TARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPV 79 (457)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 358999999999999999999988999999999999999997654 999999999999999999999987544457899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|++++..+.....+++..|+++||.||++.++|..++..+++.
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (457)
T PRK09581 80 VMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 56
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.53 E-value=6.3e-13 Score=112.10 Aligned_cols=121 Identities=22% Similarity=0.493 Sum_probs=108.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.++||++++++..+..+...|+..|+. +..+.++.+++..+.... ||+|++|+.+++++|+++++.++.....+.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999998985 677889999999887644 99999999999999999999998765446789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+|+++..........++..|+.+|+.||++..+|...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999988765
No 57
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.52 E-value=1.5e-13 Score=147.37 Aligned_cols=113 Identities=19% Similarity=0.356 Sum_probs=104.3
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCC
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-----mDGlelL~~Lr~~~~~~~i 108 (527)
||||||++..+..+...| .||+|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.|+... +.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~--~~~ 74 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIA--PDT 74 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhC--CCC
Confidence 699999999999999988 7899999999999999998654 999999999996 89999999998753 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||++|+..+.+...++++.||+|||.||++.++|..+|++++.
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999987764
No 58
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.52 E-value=5.2e-13 Score=128.59 Aligned_cols=118 Identities=26% Similarity=0.427 Sum_probs=108.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+..+|+..|+.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~---~~~pii 85 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRF---SDIPIV 85 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCCEE
Confidence 48999999999999999999999999999999999999987654 9999999999999999999999853 478999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+++...+......++..|+++||.||+...+|..+++.++++.
T Consensus 86 ~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred EEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9999998888899999999999999999999999998887654
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.52 E-value=2.1e-13 Score=146.72 Aligned_cols=116 Identities=27% Similarity=0.461 Sum_probs=107.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
||||||++..+..+..+|+..||.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+... +.+|||++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~--~~~~vIvl 76 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRH--PQLPVIVM 76 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhC--CCCeEEEE
Confidence 699999999999999999999999999999999999987654 99999999999999999999998753 67899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|++.+.....+++..|+.+||.||++.++|...+++++..
T Consensus 77 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 77 TAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred eCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887653
No 60
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.51 E-value=2e-13 Score=162.67 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=110.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+... +.+||
T Consensus 958 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~--~~~pi 1033 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQN--SSLPI 1033 (1197)
T ss_pred CceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 479999999999999999999999999999999999999997654 99999999999999999999998753 67999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|++|+..+.....+++..|+++||.||++.++|..+|+++...
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 1076 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQV 1076 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999877543
No 61
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.51 E-value=3e-13 Score=140.52 Aligned_cols=116 Identities=24% Similarity=0.401 Sum_probs=99.3
Q ss_pred CEEEEEecCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALL-RKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL-~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||||||++..+..+..+| +..+++++ .+.++.+|++.+.... ||+||+|+.||+|+|++++++|+.. ..+|
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~---~~~p 75 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAE---RPCP 75 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHH---CCCc
Confidence 48999999999999999999 56788886 5899999999998654 9999999999999999999999874 3589
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCC---------CHHHHHHHHHHHHH
Q 009734 110 VIMMSSQD--SVSTVYKCMMRGAADYLVKPV---------RRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa~~--d~~~~~~al~~GA~DyL~KP~---------~~eeL~~~L~~v~r 152 (527)
||++++.. ......++++.|+.+||.||+ ..++|...|+.+.+
T Consensus 76 vivvs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~~ 129 (337)
T PRK12555 76 ILIVTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIGR 129 (337)
T ss_pred EEEEeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHhh
Confidence 99999874 356778999999999999999 55666666666553
No 62
>PRK13435 response regulator; Provisional
Probab=99.50 E-value=5.3e-13 Score=120.36 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=103.1
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICK 106 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~ 106 (527)
.++++|||+|+++..+..+...|...||.++ .+.++.++++.+.... ||+||+|+.|+ +.+|+++++.++.. +
T Consensus 3 ~~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~---~ 77 (145)
T PRK13435 3 LRQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSAD---G 77 (145)
T ss_pred cccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhC---C
Confidence 4468999999999999999999999899977 6899999999886544 99999999998 58999999999753 4
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
.+|||+++...+. ..++..|+++||.||++..+|...|++++.+.+.
T Consensus 78 ~~pii~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~~ 124 (145)
T PRK13435 78 GVEVVFMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARRVG 124 (145)
T ss_pred CCCEEEEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCcc
Confidence 7899999976432 4678899999999999999999999998766543
No 63
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.49 E-value=6.5e-13 Score=122.75 Aligned_cols=120 Identities=23% Similarity=0.395 Sum_probs=109.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+...|...||.+..+.++.+++..+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~--~~~~i 78 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARG--SPLPV 78 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcC--CCCCE
Confidence 368999999999999999999999999999999999998887644 99999999999999999999998653 68899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|+++...+......++..|+.+|+.||+...+|...+..++.+.
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~~ 122 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQA 122 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988877653
No 64
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.47 E-value=1.6e-12 Score=121.85 Aligned_cols=120 Identities=23% Similarity=0.339 Sum_probs=106.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+.++||||||++..+..+...|+. .++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++... +.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~--~~ 80 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDG--VT 80 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhC--CC
Confidence 457999999999999999999975 578875 5889999999887644 99999999999999999999998753 57
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+|+|+++...+......++..|+++|+.||++..+|..+++.+..+
T Consensus 81 ~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 81 AQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred CeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 8999999988888999999999999999999999999999987654
No 65
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.47 E-value=1.1e-12 Score=137.21 Aligned_cols=117 Identities=29% Similarity=0.492 Sum_probs=98.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++++||||||++..+..+..+|+.. ++.++ .+.++.+++..+.... ||+||+|+.||+++|++++++|++.. +
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~--~- 76 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLR--P- 76 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhC--C-
Confidence 4589999999999999999999876 88877 6899999999987654 99999999999999999999998764 3
Q ss_pred CeEEEEecCC--CHHHHHHHHHcCCCEEEeCCCCH---------HHHHHHHHHHH
Q 009734 108 IPVIMMSSQD--SVSTVYKCMMRGAADYLVKPVRR---------NELRNLWQHVW 151 (527)
Q Consensus 108 iPVIilSa~~--d~~~~~~al~~GA~DyL~KP~~~---------eeL~~~L~~v~ 151 (527)
+|||++++.. ......++++.|+++||.||+.. .+|..+++.+.
T Consensus 77 ~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~~~~~~~~~~~~~l~~~i~~~~ 131 (354)
T PRK00742 77 TPVVMVSSLTERGAEITLRALELGAVDFVTKPFLGISLGMDEYKEELAEKVRAAA 131 (354)
T ss_pred CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcccccchHHHHHHHHHHHHHHHh
Confidence 8999999764 45667899999999999999943 44555555543
No 66
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.45 E-value=3e-12 Score=118.81 Aligned_cols=119 Identities=16% Similarity=0.351 Sum_probs=105.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
.++||||||++..+..+..+|... ++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.++... +.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~--~~~ 78 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRW--PAM 78 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHC--CCC
Confidence 479999999999999999999875 56654 6889999998887644 99999999999999999999998753 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|+|++++..+......++..|+.+|+.||++..+|...++.+.++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999887654
No 67
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.43 E-value=1.1e-12 Score=147.32 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=105.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|...||.|..+.++.+++..+.... |||||+|+.||+++|++++++|+.. .+.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~--~~~~pi 82 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQT--TAVPPV 82 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhc--CCCCCE
Confidence 479999999999999999999999999999999999999987654 9999999999999999999999864 368999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHH--HHHHHHHHHHHh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRN--ELRNLWQHVWRR 153 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~e--eL~~~L~~v~rr 153 (527)
|++|+..+.....+++..|+.+||.||.... .+..+++.++..
T Consensus 83 I~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 83 VVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999997643 566666665543
No 68
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.43 E-value=9.8e-13 Score=136.98 Aligned_cols=104 Identities=27% Similarity=0.503 Sum_probs=92.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS-YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G-y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
++|||||||...+|..|+++|...+ ++++ .+.|+.+|++.+.+.. ||+|.+|+.||.|||++++++|+.. ..+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~---~p~ 75 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRL---RPL 75 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcC---CCC
Confidence 4799999999999999999999988 5554 5889999999998765 9999999999999999999999876 478
Q ss_pred eEEEEecCC--CHHHHHHHHHcCCCEEEeCCCC
Q 009734 109 PVIMMSSQD--SVSTVYKCMMRGAADYLVKPVR 139 (527)
Q Consensus 109 PVIilSa~~--d~~~~~~al~~GA~DyL~KP~~ 139 (527)
||||+|+.. ..+...+|+++||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 999998754 4678889999999999999985
No 69
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.43 E-value=4.9e-12 Score=118.88 Aligned_cols=120 Identities=22% Similarity=0.353 Sum_probs=106.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+||||||++..+..+..+|+.. ++.++ .+.++.+++..+.... ||+||+|+.||+++|+++++.++... +.+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~--~~~ 81 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKS--LSG 81 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhC--CCC
Confidence 479999999999999999999764 67654 5889999999887654 99999999999999999999998753 578
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|+|+++...+......++..|+++|+.||++..+|...++.++++.
T Consensus 82 ~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999987653
No 70
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.41 E-value=2.6e-12 Score=126.44 Aligned_cols=118 Identities=11% Similarity=0.135 Sum_probs=97.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH-HHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL-TLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL-~~Lr~~~~~~~i 108 (527)
+.+|+||||+|.++..|+.+|+ .++. +..+.++.+++..+. .|||||+|+.||+++|++++ +.|+... +.+
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~--p~~ 82 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKN--NNI 82 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhC--CCC
Confidence 4679999999999999999998 4455 445789999988653 28999999999999999997 5676543 689
Q ss_pred eEEEEecCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHhhccc
Q 009734 109 PVIMMSSQDSVSTVYKCMM--RGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~--~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~ 157 (527)
+||++|+.++. ...++. .||.+||.|+.+.++|..+|+.+..+....
T Consensus 83 ~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 83 KILLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred cEEEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 99999998774 334555 599999999999999999999998765443
No 71
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.39 E-value=4.2e-12 Score=124.20 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=91.8
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHHcCCCCceEEE---EeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 44 RQIVTALLRK---SSYRVTAVPDGLKAWEVLKGRPRNIDLIL---TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 44 r~~L~~lL~~---~Gy~V~~a~dg~eALe~L~~~~~~pDLVL---lDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
|..++.+|.. .||.|..+.++.++++.+.... ||+|| +|+.||+++|++++++|++.. +.+|||++|+++
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~--p~~~iIvlt~~~ 78 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKF--PRMRRLVIADDD 78 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHC--CCCCEEEEeCCC
Confidence 6778888864 3555678999999999887644 89998 688899999999999998753 789999999988
Q ss_pred CHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 118 SVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 118 d~~~~~~al-~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+......++ ..||.+||.||++.++|..+|+.++++..
T Consensus 79 ~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 79 IEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 777666666 79999999999999999999999987654
No 72
>PRK09191 two-component response regulator; Provisional
Probab=99.38 E-value=1.4e-11 Score=121.55 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=101.8
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICK 106 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~ 106 (527)
.+..+||||||++..+..+...|+..|+.+. .+.++.+++..+.... ||+||+|+.||+ ++|+++++.++...
T Consensus 135 ~~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~--- 209 (261)
T PRK09191 135 QVATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTF--- 209 (261)
T ss_pred cCCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhC---
Confidence 3567999999999999999999998899887 6889999999987654 999999999995 89999999997653
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+|||++|+..+.... +...|+.+||.||++.++|..+|++++...
T Consensus 210 ~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~ 255 (261)
T PRK09191 210 DVPVIFITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFFQ 255 (261)
T ss_pred CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhcc
Confidence 7899999998765543 345678999999999999999998876543
No 73
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.37 E-value=1.5e-11 Score=120.03 Aligned_cols=120 Identities=10% Similarity=0.121 Sum_probs=99.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEeCC--CCCCCHHHHHHHHHhcccCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY--RV-TAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy--~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~mDGlelL~~Lr~~~~~~ 106 (527)
+.||||||++.++..++.+|+..++ .+ ..+.++.+++..+.... |||||+|+. ||+.+|++++++|++.. |
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~--p 76 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQH--P 76 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHC--C
Confidence 4689999999999999999986553 44 45899999999887654 999999976 88889999999998653 6
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAAD-YLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~D-yL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
.++||++|++++..... ++..|+.. |+.|+.+.++|..+|+.+..+...
T Consensus 77 ~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~ 126 (207)
T PRK15411 77 NTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETT 126 (207)
T ss_pred CCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcc
Confidence 89999999998776543 55556554 889999999999999999876544
No 74
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.32 E-value=2.7e-11 Score=140.11 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=108.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+...|...||+++.+.++.++++.+......||+||+ .||+++|+++++.|+... +.+||
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~--~~ipI 772 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAA--PTLPI 772 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhC--CCCCE
Confidence 36899999999999999999999999999999999999999754334899999 799999999999998654 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++++........+++..| ++||.||++..+|..+|++++++.
T Consensus 773 Ivls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 773 ILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999 999999999999999999988654
No 75
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.31 E-value=1.5e-11 Score=117.98 Aligned_cols=121 Identities=23% Similarity=0.361 Sum_probs=103.2
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.+.++||++||++..+..+...|...||.++ ++.++..+.+.+.... ||+||+|+.||..|-++-+....+ ...
T Consensus 3 ~~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~---~~~ 77 (194)
T COG3707 3 AMLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASE---NVA 77 (194)
T ss_pred ccccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhc---CCC
Confidence 4678999999999999999999999999755 5779999988888765 999999999999994444444332 246
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.|||++|++.+...+.++++.|+..||+||++...|+..|.-+..+.
T Consensus 78 ~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 78 RPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred CCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 69999999999999999999999999999999999988887666554
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.30 E-value=6.4e-11 Score=94.90 Aligned_cols=112 Identities=29% Similarity=0.523 Sum_probs=100.3
Q ss_pred EEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 35 LLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 35 LLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
|++++++..+..+...|...|+.+..+.+..+++..+.... ||+||+|+.++..+|+++++.++.. .+.+|+|+++
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~--~~~~~~i~~~ 76 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLT 76 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHh--CCCCCEEEEE
Confidence 57899999999999999998999988999999999887654 9999999999999999999999876 3578999999
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 115 SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
..........++..|+.+|+.||+...+|...++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 77 AHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 888888888999999999999999999998887653
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.22 E-value=1.8e-10 Score=124.00 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=107.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iP 109 (527)
..+||||+|++..+..+..+|+..||.+..+.++.++++.+... ..||+||+|..||+ ++|+++++.|+... +.+|
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~--~~~~ 491 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQ--PKIK 491 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhC--CCCc
Confidence 46899999999999999999999999999999999999988643 24999999999997 99999999998753 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||+++..........++..|+.+||.||++.++|...++.++..
T Consensus 492 ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 492 VLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 99999998888888899999999999999999999999887654
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.18 E-value=1.7e-10 Score=118.65 Aligned_cols=91 Identities=25% Similarity=0.480 Sum_probs=81.1
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC-
Q 009734 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV- 138 (527)
Q Consensus 60 ~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~- 138 (527)
.+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|||++|+..+.+.+.++++.||+|||.||+
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~--~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~ 77 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRG--DQTPVLVISATENMADIAKALRLGVQDVLLKPVK 77 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCC
Confidence 4678999999997654 99999999999999999999998753 679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 009734 139 RRNELRNLWQHVWRRQ 154 (527)
Q Consensus 139 ~~eeL~~~L~~v~rr~ 154 (527)
+.++|..+|.++++..
T Consensus 78 ~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 78 DLNRLREMVFACLYPS 93 (303)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 5899999888876543
No 79
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=8.5e-10 Score=110.62 Aligned_cols=117 Identities=21% Similarity=0.443 Sum_probs=100.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++|++|||++..++.|..++... .+++. .+.++.++++.++.. .+|++|+|+.||+++|+++...|+... +..
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~--~~~ 76 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGD--PRP 76 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccC--CCC
Confidence 479999999999999999999842 34433 588999999999876 499999999999999999999998763 567
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+||++|+++ +.+..+++..|.|||.||+..+.|...+.+..+.
T Consensus 77 ~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 899999985 5566788999999999999999999999876554
No 80
>PRK15029 arginine decarboxylase; Provisional
Probab=99.05 E-value=1.6e-09 Score=123.53 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=93.1
Q ss_pred CEEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH----HHHHHH
Q 009734 32 LRVLLVEADDS--------TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF----ALLTLV 99 (527)
Q Consensus 32 lrVLLVDDD~~--------~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl----elL~~L 99 (527)
|+|||||||.. .++.|+..|+..||+|..+.++.+|+..+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 37999999995 79999999999999999999999999999752 149999999999999997 899999
Q ss_pred HhcccCCCCeEEEEecCCC--HHHHHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHHhh
Q 009734 100 MEHEICKNIPVIMMSSQDS--VSTVYKCMMRGAADYLVKPVRRNEL-RNLWQHVWRRQ 154 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d--~~~~~~al~~GA~DyL~KP~~~eeL-~~~L~~v~rr~ 154 (527)
|+.. +++||||+|+..+ ...... ..--++.|+.+--+..++ ...|....++.
T Consensus 80 R~~~--~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 134 (755)
T PRK15029 80 HERQ--QNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_pred HhhC--CCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHHH
Confidence 8643 5899999999985 333222 223467888886665554 33455554443
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.49 E-value=6.5e-07 Score=103.77 Aligned_cols=115 Identities=17% Similarity=0.173 Sum_probs=95.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+|||+||++..+..+..+|+..|+.+..+.++.+ +... .||++|+|+.||++++...+............++
T Consensus 536 g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~--~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (919)
T PRK11107 536 GKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPEA--HYDILLLGLPVTFREPLTMLHERLAKAKSMTDFL 609 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hccC--CCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcE
Confidence 469999999999999999999999999999888887 3333 3999999999998887766555543332334578
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
|+++..........+...|+++|+.||+...+|...+....
T Consensus 610 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 610 ILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred EEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 88888888888889999999999999999999998887654
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.14 E-value=2.2e-06 Score=92.43 Aligned_cols=92 Identities=26% Similarity=0.373 Sum_probs=80.6
Q ss_pred CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 56 YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 56 y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
|+|..+..|.+|+..+..+. ||++|+|+.||+|+|+++++.+++... ++||+|..++...-.+.+++|+++||.
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~~~~~~~~l~ 86 (435)
T COG3706 13 KEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGLKAGADDFLT 86 (435)
T ss_pred hhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHHhhhhhhhcc
Confidence 46777899999999998765 999999999999999999999987643 388999999888889999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 009734 136 KPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 136 KP~~~eeL~~~L~~v~rr 153 (527)
||+....+..+...+.+.
T Consensus 87 ~~~~~~~~~~r~~~l~~~ 104 (435)
T COG3706 87 KPVNDSQLFLRAKSLVRL 104 (435)
T ss_pred CCCChHHHHHhhhhhccc
Confidence 999999988777766544
No 83
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.81 E-value=0.00015 Score=64.30 Aligned_cols=107 Identities=18% Similarity=0.235 Sum_probs=76.9
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 009734 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIi 112 (527)
||||||||..-|..|..+|+-.|+++..+....- ........ ++.+++-..-.. ...++++.|.+.. +.+|||+
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~-~~~~~l~~l~~~~--~~~Pvll 74 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS-KLAELLKELLKWA--PHIPVLL 74 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch-hHHHHHHHHHhhC--CCCCEEE
Confidence 6999999999999999999999999888775433 23333332 455544332222 5577888886654 7899999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
+......... ..+.+-|.-|++..+|..+|+++
T Consensus 75 lg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 75 LGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred ECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 9887765111 12666789999999999988874
No 84
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.72 E-value=0.00025 Score=49.00 Aligned_cols=55 Identities=38% Similarity=0.660 Sum_probs=48.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
++|+++++++..+..+...|...|+++..+.+..+++..+.... +|+|++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999999999988999999999886544 99999998764
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.57 E-value=0.068 Score=47.94 Aligned_cols=111 Identities=13% Similarity=0.058 Sum_probs=79.5
Q ss_pred EEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcc
Q 009734 33 RVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHE 103 (527)
Q Consensus 33 rVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mD--GlelL~~Lr~~~ 103 (527)
|||+. |.+..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..++..- --+++++|++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 666777777888899999998874 35677778877655 99999988776422 246677777653
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
+.-+.|++.+....+...++.++|++.|+..--..++....|
T Consensus 79 --~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 --AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 223445566655566677888999999999888877776554
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.54 E-value=0.11 Score=47.96 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=89.6
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~m--DGlelL~~Lr~ 101 (527)
..+||+. |.+..-...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|... .-.+++++|++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 3578887 888888888999999999999874 35777888887655 9999999888743 34677888876
Q ss_pred cccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
... ++++|++ .+.. ..+...++.++|++..+...-+.+++...|++.+.
T Consensus 81 ~~~-~~~~i~v-GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 81 AGL-GDILLYV-GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred cCC-CCCeEEE-ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 632 4665553 3332 45566788999999999988899999888887654
No 87
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.40 E-value=0.028 Score=50.07 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEEEecCCCHHH
Q 009734 44 RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIMMSSQDSVST 121 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~ 121 (527)
...|...|+..|++|+.+.+.++++..++... .+..|++++. ++ ....++++.|+... .++||.+++.....+.
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~~~~~ 81 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERDTTED 81 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCCHHHC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCCCccc
Confidence 45677788889999999999999999999764 5999999986 21 23568899998775 6899999998775555
Q ss_pred HHHHHHcCCCEEEeCCCCHHHH-HHHHHHHHH
Q 009734 122 VYKCMMRGAADYLVKPVRRNEL-RNLWQHVWR 152 (527)
Q Consensus 122 ~~~al~~GA~DyL~KP~~~eeL-~~~L~~v~r 152 (527)
+-...-..+++|+...-+..++ ..+|..+.+
T Consensus 82 l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 82 LPAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CCHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CCHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 5555556688999887765554 445555443
No 88
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.71 E-value=0.15 Score=45.05 Aligned_cols=94 Identities=18% Similarity=0.143 Sum_probs=66.3
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCC-CCeEE
Q 009734 38 EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICK-NIPVI 111 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~-~iPVI 111 (527)
|.+..-...+..+|+..||+|... ...++.++.+.+.. ||+|.+-..+.. ....++++.+++.. + +++|+
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~--~~~~~i~ 85 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAG--LDDIPVL 85 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcC--CCCCeEE
Confidence 566777788999999999998763 35667778777655 999999887654 34578888887763 4 55554
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+.+..-......+...|++.|+..
T Consensus 86 -vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 86 -VGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred -EECCCCChhHHHHHHcCCeEEECC
Confidence 555443333457888999777653
No 89
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.55 E-value=0.013 Score=69.18 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=41.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL 87 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M 87 (527)
..+||||||++.++..+..+|+.+|++|+.+.++. .. ..|||||+|+.+
T Consensus 689 g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~~--~~~Dlvl~D~~~ 737 (894)
T PRK10618 689 GVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------IS--QEYDIFLTDNPS 737 (894)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------cC--CCCCEEEECCCC
Confidence 47999999999999999999999999999887632 22 349999999984
No 90
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.35 E-value=0.54 Score=43.14 Aligned_cols=110 Identities=7% Similarity=-0.031 Sum_probs=78.3
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEE
Q 009734 38 EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~~~~~~~iPVIi 112 (527)
|-+..-...+..+|+..||+|+.. .+.++.++.+.+.. +|+|.+-..|.. +. --++++.|++... .+++ |+
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~g~-~~i~-vi 88 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKLGR-PDIL-VV 88 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhcCC-CCCE-EE
Confidence 556667778888999999998873 47888888887755 899998766642 22 2356667766542 2444 44
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+-+....+...+..++|+++|+..--+..+....+...+
T Consensus 89 vGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 89 VGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKL 127 (132)
T ss_pred EeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHH
Confidence 555444556677899999999998888888877776644
No 91
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=94.65 E-value=0.28 Score=56.68 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=78.2
Q ss_pred CEEEEEecCH-HH-----HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 32 LRVLLVEADD-ST-----RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 32 lrVLLVDDD~-~~-----r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
|+||||+++- .. ...|...|++.||+|..+.+..+++..++.. ..+++|++++.-. ..+++..++...
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~-- 74 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLN-- 74 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhC--
Confidence 4788888774 11 4456677888999999999999999998854 3689999996433 356888888765
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHhh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR-RNELRNLWQHVWRRQ 154 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~-~eeL~~~L~~v~rr~ 154 (527)
.++||+++........+....-.-++.|+.--.+ .+.+...|.++.++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (713)
T PRK15399 75 EYLPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNEY 124 (713)
T ss_pred CCCCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHHH
Confidence 6899999876543333333333345666664444 333344455555444
No 92
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.13 E-value=0.35 Score=55.91 Aligned_cols=117 Identities=9% Similarity=0.128 Sum_probs=76.5
Q ss_pred CEEEEEecCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 32 LRVLLVEADD-S-----TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 32 lrVLLVDDD~-~-----~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
|+||||+++. . -.+.|...|++.||+|+.+.+..+++..++.. ..+.+|++|+.- ...+++..++...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~-- 74 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK---YNLELCEEISKMN-- 74 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch---hhHHHHHHHHHhC--
Confidence 4788887762 1 24456677888999999999999999988854 368999999533 2255888888765
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHhh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR-RNELRNLWQHVWRRQ 154 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~-~eeL~~~L~~v~rr~ 154 (527)
.++||+++........+......-+++|+.---+ .+.+...|.+..++.
T Consensus 75 ~~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~y 124 (714)
T PRK15400 75 ENLPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDEY 124 (714)
T ss_pred CCCCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHHH
Confidence 5899999876543332222232335566554333 344444455555444
No 93
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.98 E-value=1.6 Score=40.28 Aligned_cols=108 Identities=8% Similarity=0.000 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEEe
Q 009734 40 DDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 40 D~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~~~~~~~iPVIilS 114 (527)
+..-...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|.. +. --++.++|++... .++ +|++-
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl-~~~-~vivG 89 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGL-EGI-LLYVG 89 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCC-CCC-EEEec
Confidence 4455677888999999999873 57888888887765 999999877753 22 3466677777653 344 45566
Q ss_pred cCC-----CH-HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 115 SQD-----SV-STVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 115 a~~-----d~-~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+.. +. ....++.++|++..+...-..+++...|++.+
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 531 22 23456889999989988888888888877654
No 94
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=93.66 E-value=0.32 Score=50.53 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=56.0
Q ss_pred CCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE-ecCCCHHHHHHHHHcCCCEE
Q 009734 55 SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM-SSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 55 Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIil-Sa~~d~~~~~~al~~GA~Dy 133 (527)
|.++..+.+..++-.... .-.+||+|..+-. .++..+ .+ +...||++ ....+.+....++.+|+.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~----~~~~~~--~p--~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~ 68 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADMAE----ACAAAG--LP--RRRRVVLVGGGEPGGALWRAAAAVGAEHV 68 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchhhh----HHHhcc--CC--CCCCEEEEeCCCCCHHHHHHHHHhChhhe
Confidence 456666776665544332 2568999864411 111111 12 22335544 44667999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHH
Q 009734 134 LVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 134 L~KP~~~eeL~~~L~~v~ 151 (527)
|.+|++..+|..++.++.
T Consensus 69 l~~P~~~~~l~~~l~~~~ 86 (322)
T TIGR03815 69 AVLPEAEGWLVELLADLD 86 (322)
T ss_pred eeCCCCHHHHHHHHHhhc
Confidence 999999999999988764
No 95
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.22 E-value=1.2 Score=43.45 Aligned_cols=101 Identities=13% Similarity=0.148 Sum_probs=72.1
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCC--CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~m--DGlelL~~Lr~ 101 (527)
..+||+. |-+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+-..|+.. ...++++.|++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 3578887 777777888999999999998863 25677778887655 9999999877652 34677788877
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.....+++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 6433367766544333333 4566799888754
No 96
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=92.60 E-value=1.9 Score=43.71 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=75.0
Q ss_pred CEEEEEecCHHHHHHHHHHH------HhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCC---------CCCHHH
Q 009734 32 LRVLLVEADDSTRQIVTALL------RKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP---------SISGFA 94 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL------~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP---------~mDGle 94 (527)
+|+=|+.|+....-.+...+ -+.||.|. ++.|...|-++... . +++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~-G--~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA-G--CAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-C--CCEe-----CCCCcCCCCCCCCCCHH
Confidence 56666666554333333332 34499876 45677777665543 3 7877 77 232268
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 009734 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~rr 153 (527)
+++.|++. .++|||+=.+-...+.+.+++++||+..++ |.-++..+..++..++..
T Consensus 166 ~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 88888775 378999888889999999999999999964 555566666666665543
No 97
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=91.94 E-value=1.7 Score=42.95 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=73.6
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~ 101 (527)
..+||+. |.+..=...+..+|+..||+|+... ..++.++.+.+.. ||+|.+-..|+. + .-.+++++|++
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~~ 165 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMNR 165 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHHh
Confidence 3578887 7788888888999999999998742 5777778887755 999999988874 2 34577888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHH---HHHcCCCEEEeCCCC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYK---CMMRGAADYLVKPVR 139 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~---al~~GA~DyL~KP~~ 139 (527)
.. .+++|++=.+.-+.+.+.. +-..||+.|-.-...
T Consensus 166 ~~--~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~ 204 (213)
T cd02069 166 RG--IKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASR 204 (213)
T ss_pred cC--CCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHH
Confidence 53 4777775444444444332 245799888654433
No 98
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.35 E-value=4.3 Score=41.27 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=75.4
Q ss_pred CEEEEEecCHHHHHHHHHH------HHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCC---------CCCHHH
Q 009734 32 LRVLLVEADDSTRQIVTAL------LRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP---------SISGFA 94 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~l------L~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP---------~mDGle 94 (527)
+|+=|+.|+....-.+... |-+.||.|. ++.|...|-++... . +|+| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~-G--~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA-G--CAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc-C--CCEe-----CCCCcCCCCCCCCCCHH
Confidence 5776777655333333322 334599877 45677777665543 3 7887 77 222267
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 009734 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~rr 153 (527)
+++.|++. .++|||+=.+-...+.+.+++++|++..++ |.-++..+...+..+++.
T Consensus 166 ~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 88888775 378999988889999999999999999964 555666766666665543
No 99
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=90.46 E-value=7.6 Score=35.66 Aligned_cols=105 Identities=11% Similarity=0.028 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEEe
Q 009734 40 DDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 40 D~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~~~~~~~iPVIilS 114 (527)
+..-..++..+|+..||+|+.. ...++.++.+.+.. +|+|.+-..|.. +. --++++.|++... .+++|+ +.
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl-~~v~vi-vG 87 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGL-KDILLY-VG 87 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCC-CCCeEE-EE
Confidence 4445567888999999999863 47788888887654 999999877764 33 3577778877643 355555 44
Q ss_pred cC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 115 SQ------DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 115 a~------~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
+. +..+...++.++|++..+...-+.+++...|+
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 43 22345567889999999988778887766553
No 100
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=90.03 E-value=2.4 Score=40.96 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=61.9
Q ss_pred ccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCE---EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-H
Q 009734 18 EGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYR---VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-F 93 (527)
Q Consensus 18 ~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~---V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-l 93 (527)
.|.+.-| ++.|...+|++||-++.....|++-++.++.. .+...|...++..+......||+|++|=--..... .
T Consensus 53 SGalGlE-ALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~ 131 (183)
T PF03602_consen 53 SGALGLE-ALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYE 131 (183)
T ss_dssp TSHHHHH-HHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHH
T ss_pred cCccHHH-HHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHH
Confidence 3666666 56777789999999999999999999988753 34467888888777433345999999932222332 5
Q ss_pred HHHHHHHhcccCCCCeEEEE
Q 009734 94 ALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIil 113 (527)
+++..|.+......-.+|++
T Consensus 132 ~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 132 ELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp HHHHHHHHTTSEEEEEEEEE
T ss_pred HHHHHHHHCCCCCCCEEEEE
Confidence 68888865544333345544
No 101
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.92 E-value=2.8 Score=40.88 Aligned_cols=100 Identities=13% Similarity=0.055 Sum_probs=67.2
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCC-C-HHHHHHHHHhc
Q 009734 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI-S-GFALLTLVMEH 102 (527)
Q Consensus 32 lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~m-D-GlelL~~Lr~~ 102 (527)
-+||+. |.+..=...+..+|+..||+|+.. ...++.++.+++.. ||+|.+-..|+.. . -.++++.|++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 466554 345666677888899999999863 36677888887755 9999999877642 2 25677788776
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
...++++|++=-..-.. .-+...||+.|-.-
T Consensus 163 ~~~~~v~i~vGG~~~~~---~~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFMVGGAPVTQ---DWADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEEEEChhcCH---HHHHHhCCcEEeCC
Confidence 44445666543322232 24567899988643
No 102
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=88.58 E-value=4.1 Score=35.46 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeC-CCCCC-CHHHHHHHHHhcccCCCCeEEEEe
Q 009734 40 DDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEV-DLPSI-SGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 40 D~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl-~MP~m-DGlelL~~Lr~~~~~~~iPVIilS 114 (527)
.+.-...+..+|++.||+|... ...++..+.+.+.. ||+|.+.. ..+.. ...++++.+++.. ++++||+=-
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~--p~~~iv~GG 88 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERN--PNIPIVVGG 88 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTC--TTSEEEEEE
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcC--CCCEEEEEC
Confidence 4667788999999999998765 24577777777654 99999988 44444 3467777766543 566666544
Q ss_pred cCCCHHHHHHHHH--cCCCEEEe
Q 009734 115 SQDSVSTVYKCMM--RGAADYLV 135 (527)
Q Consensus 115 a~~d~~~~~~al~--~GA~DyL~ 135 (527)
.+. ...-..+++ .|++..+.
T Consensus 89 ~~~-t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 89 PHA-TADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSS-GHHHHHHHHHHHTSEEEEE
T ss_pred Cch-hcChHHHhccCcCcceecC
Confidence 333 333334444 56665554
No 103
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=88.33 E-value=12 Score=35.91 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=57.4
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCCCC--------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCE
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPSI--------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP~m--------DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~D 132 (527)
+.+..++.+..+. .+|+|.+.-..|.. .|++.++++++.. +++||++..+- +.+.+..++..||+.
T Consensus 111 ~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~v~a~GGI-~~~~i~~~~~~Ga~g 184 (212)
T PRK00043 111 THTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV--GDIPIVAIGGI-TPENAPEVLEAGADG 184 (212)
T ss_pred CCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 4566777776653 38999987656543 4688999987653 45899988776 578888999999999
Q ss_pred EEe-----CCCCHHHHHHHHHH
Q 009734 133 YLV-----KPVRRNELRNLWQH 149 (527)
Q Consensus 133 yL~-----KP~~~eeL~~~L~~ 149 (527)
+.. +.-++.+....+..
T Consensus 185 v~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 185 VAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred EEEeHHhhcCCCHHHHHHHHHH
Confidence 974 43344444443433
No 104
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.24 E-value=2.3 Score=38.71 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=72.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHH--HHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT--LVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~--~Lr~~~~~~~i 108 (527)
..+.+.||.+-........+|..-+.+|+.-.... .+-. ..||++|+.+-.+--.-..+.. ..+.... -+.
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~----~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td~ 83 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFS----ALPP--AHYDMMLLGVAVTFRENLTMQHERLAKALSM-TDF 83 (140)
T ss_pred cceeEEecCccHHHHHHHHHHhcCCceEEeccccc----ccCh--hhhceeeecccccccCCchHHHHHHHHHHhh-hcc
Confidence 46899999999999999999999999988754332 2211 2399999998776544332221 1222221 122
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
-|+.+-+ .....+.+.+..|+.++|.||++.-.|...+
T Consensus 84 vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 84 VILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred eEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 2333323 2345567888999999999999999887643
No 105
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=87.63 E-value=22 Score=33.32 Aligned_cols=117 Identities=12% Similarity=0.061 Sum_probs=79.9
Q ss_pred cCEEEE----EecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHh
Q 009734 31 ALRVLL----VEADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLL----VDDD~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~ 101 (527)
..|||| .|-+..=...+..+|+..||+|+. ..+++|++...-+.. .|+|.+-..-.+ ...-++.+.|++
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEeccchHHHHHHHHHHHHHH
Confidence 456665 477778888999999999999886 568999988775443 788877542221 123356666766
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
... .++. ++.-+.-..+...+..+.|++.++.--....+...-+...+
T Consensus 90 ~G~-~~i~-v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 90 AGV-EDIL-VVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred hCC-cceE-EeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 543 2333 35566666777778888999999987777776655544433
No 106
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=86.45 E-value=7.2 Score=34.74 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 42 STRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
.-...+..+|++.|+.+.. ....++.++.+... ..||+|.+-+..+.. ...++++.||+.. ++++||+--.+..
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~--p~~~iv~GG~~~t 79 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVL--PNVIVVVGGPHAT 79 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHC--CCCEEEECCcchh
Confidence 4456788999999987655 34556666766541 249999999855543 4677888888754 6777776443332
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 119 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 119 ~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
.. -...+..-..||++.---..-+..+++.+.
T Consensus 80 ~~-p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 80 FF-PEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred hC-HHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 21 112244445678887655555666666543
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.21 E-value=12 Score=32.29 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=62.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHh-CCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRK-SSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~-a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+||.||-=-..-+..+..+++. .+++++. +. +...+-...+... +. ++.| ++.+-... ..++
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~--~~-~~~~-----------~~~ll~~~-~~D~ 65 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYG--IP-VYTD-----------LEELLADE-DVDA 65 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT--SE-EESS-----------HHHHHHHT-TESE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhc--cc-chhH-----------HHHHHHhh-cCCE
Confidence 4667777666666666676666 4666654 33 3333333333322 34 4444 23332221 1233
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
-+|........+.+..+++.|..=|+-||+ +.+++..+++.+-+.
T Consensus 66 V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 66 VIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 333333344678899999999999999999 788888777765433
No 108
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.11 E-value=13 Score=36.43 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=59.1
Q ss_pred HHHHHHHHh-CCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCC-------CCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 45 QIVTALLRK-SSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVD-------LPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 45 ~~L~~lL~~-~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~-------MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
..+...+++ .++.+.. +.+.+++...... . +|+|.+... .+....++++++|+..- ++|||...+
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~-G--~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~iPvia~GG 181 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQKL-G--FDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---GCPVIAEGR 181 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc-C--CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---CCCEEEECC
Confidence 344444555 6666544 6778887655543 3 788865321 12233578889887652 689999888
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 009734 116 QDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (527)
-.+.+.+.+++..||+.++.=
T Consensus 182 I~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 182 INTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCHHHHHHHHHCCCCEEEEc
Confidence 888999999999999988754
No 109
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=84.78 E-value=25 Score=35.84 Aligned_cols=90 Identities=16% Similarity=0.019 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 41 DSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V-~~a~dg~eALe~L~~~~~~pDLVLlDl---~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+.....+....+..|..+ +.+.+..++...+.. .+|+|-+.- .....| ++...+|...- ...+++|..++-
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~-p~~~~vIaegGI 220 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLI-PSDRLVVSESGI 220 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhC-CCCCEEEEEeCC
Confidence 444445555556678875 458899888766653 278887531 122333 66667775432 124689999999
Q ss_pred CCHHHHHHHHHcCCCEEEe
Q 009734 117 DSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~ 135 (527)
.+.+.+.+++.+|++.+++
T Consensus 221 ~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999864
No 110
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=83.46 E-value=15 Score=43.02 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=79.0
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCC--CHHHHHHHHHhc
Q 009734 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVMEH 102 (527)
Q Consensus 32 lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~m--DGlelL~~Lr~~ 102 (527)
.+|+|. |.+..-...+..+|+..||+|..- .+.+++++.+.+.. +|+|++-..+... ..-++++.|++.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 456654 344555566778889999999642 46788888887654 8998887655432 355788888776
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
. .++++| ++.+..-.+....+.++|+++||..-.+..++...+++.+
T Consensus 661 G-~~~v~v-l~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 661 G-REDIMV-VVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred C-CCCcEE-EEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 4 123434 4555433344456788999999999888888777776655
No 111
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=83.29 E-value=19 Score=31.03 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=59.5
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+...+|++||.++...+ .++..|+.++... .-.+.|+.+.-. ..+.||+...- +..-+.++..+++.. +.
T Consensus 19 ~~~~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~--~~ 89 (116)
T PF02254_consen 19 EGGIDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELN--PD 89 (116)
T ss_dssp HTTSEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHT--TT
T ss_pred hCCCEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHC--CC
Confidence 34468999999998743 3445567766643 334556655433 48888887542 234456666666543 66
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
++||+... +......+..+|++..+
T Consensus 90 ~~ii~~~~--~~~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 90 IRIIARVN--DPENAELLRQAGADHVI 114 (116)
T ss_dssp SEEEEEES--SHHHHHHHHHTT-SEEE
T ss_pred CeEEEEEC--CHHHHHHHHHCCcCEEE
Confidence 78876654 45666677789997765
No 112
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.03 E-value=10 Score=32.40 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=53.6
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCHHH-HHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 33 RVLLVEADDSTRQIVTALLRKSSYRVTAV--PDGLK-AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~~Gy~V~~a--~dg~e-ALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+||||-..+.....++..+++.|++.... ..+.. .-..+...-...|+||+=...-. -.+...+++.....++|
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs---H~~~~~vk~~akk~~ip 77 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS---HNAMWKVKKAAKKYGIP 77 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC---hHHHHHHHHHHHHcCCc
Confidence 58999998888899999999999988777 21111 11122221123698877543333 33444444333335789
Q ss_pred EEEEecCCCHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCM 126 (527)
Q Consensus 110 VIilSa~~d~~~~~~al 126 (527)
+++.-+.+ ...+.+++
T Consensus 78 ~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 78 IIYSRSRG-VSSLERAL 93 (97)
T ss_pred EEEECCCC-HHHHHHHH
Confidence 99875443 33444443
No 113
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=83.01 E-value=2 Score=42.05 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=53.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC--CCCCCCH--HHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISG--FALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl--~MP~mDG--lelL~~Lr~~~~~~ 106 (527)
+++|||||....+-.-|..+|++.|.+|..+.+....++.++... ||.|++-- .-|.-.| +++++++ ..
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~-----~~ 73 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF-----AG 73 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh-----cC
Confidence 368999999999999999999999988887655433334454433 89999864 3344333 4445544 24
Q ss_pred CCeEEEEe
Q 009734 107 NIPVIMMS 114 (527)
Q Consensus 107 ~iPVIilS 114 (527)
.+||+-+.
T Consensus 74 ~~PiLGVC 81 (191)
T COG0512 74 RIPILGVC 81 (191)
T ss_pred CCCEEEEC
Confidence 67888654
No 114
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=82.76 E-value=39 Score=34.76 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=70.2
Q ss_pred HHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-----HHHHHHHHhcccCCCCeEEEEecCCCH
Q 009734 47 VTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-----FALLTLVMEHEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 47 L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-----lelL~~Lr~~~~~~~iPVIilSa~~d~ 119 (527)
..+.|-+.||.|... .|..-|-++.+. . -.+++-+.-|-.+| -..++.|++. +++|||+=.+-...
T Consensus 129 Aae~Lv~eGF~VlPY~~~D~v~a~rLed~-G---c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpVivdAGIgt~ 201 (267)
T CHL00162 129 AAEFLVKKGFTVLPYINADPMLAKHLEDI-G---CATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVIIDAGIGTP 201 (267)
T ss_pred HHHHHHHCCCEEeecCCCCHHHHHHHHHc-C---CeEEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEEeCCcCCH
Confidence 344566789998873 455555454443 3 24555566663333 3567777765 47999999999999
Q ss_pred HHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHHh
Q 009734 120 STVYKCMMRGAADYL-----VKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 120 ~~~~~al~~GA~DyL-----~KP~~~eeL~~~L~~v~rr 153 (527)
+.+.+++++|++..| .|--++.++...++.+.+.
T Consensus 202 sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 202 SEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999985 4667778888888776643
No 115
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=81.53 E-value=23 Score=34.14 Aligned_cols=88 Identities=20% Similarity=0.162 Sum_probs=58.0
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
.+...+|..||.++...+.++.-++..++. +. ...|..+++..+......+|+|++|--.....-.+++..|.....
T Consensus 69 srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~ 148 (189)
T TIGR00095 69 SRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWI 148 (189)
T ss_pred hCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCC
Confidence 344458999999999999999999888763 33 345666666544322123799999975554444567777765544
Q ss_pred CCCCeEEEEec
Q 009734 105 CKNIPVIMMSS 115 (527)
Q Consensus 105 ~~~iPVIilSa 115 (527)
..+-.+|++-.
T Consensus 149 l~~~~iiv~E~ 159 (189)
T TIGR00095 149 LEDTVLIVVEE 159 (189)
T ss_pred CCCCeEEEEEe
Confidence 44555666543
No 116
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=81.18 E-value=14 Score=35.84 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=52.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
-+++|+.+++.+++.++++++.+| |.|..+.+..++++.++.....|.|+..+..+.. .++-++.
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~ 98 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIRE 98 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHH
Confidence 578999999999999999999986 6788899999999998743334888888888766 4444443
No 117
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=81.05 E-value=18 Score=40.13 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEE
Q 009734 40 DDSTRQIVTALLRKSS-YRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 40 D~~~r~~L~~lL~~~G-y~V~~a~------dg~eALe~L~~~~~~pDLVLlDl~MP~mD-GlelL~~Lr~~~~~~~iPVI 111 (527)
.|.-...|...|+..| ++|..+. +.++..+.+.+.. ||+|.+-..-|... ..++++.+++.. |+++||
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~--P~~~iV 96 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERL--PNAIIV 96 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHC--CCCEEE
Confidence 4677788999999999 5776642 3344455565544 99999987666543 457777777653 677777
Q ss_pred EEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 112 MMSSQDSVSTVYKCMM-RGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 112 ilSa~~d~~~~~~al~-~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+=-.+... .-.+++. ....||++.---...+..+++.+.
T Consensus 97 ~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 97 LGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred EcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 54333332 2234443 456789998777777777777654
No 118
>PRK12704 phosphodiesterase; Provisional
Probab=79.94 E-value=3.3 Score=46.43 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=39.1
Q ss_pred eEEEEecCCCHH--HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVS--TVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~--~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+|++|+++... .+..+++.++.|+..||++.+++...++.-+.+
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 588899999776 999999999999999999999998888765543
No 119
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=79.88 E-value=16 Score=37.25 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=79.3
Q ss_pred CccccChhhhhhhcc---------CccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhC-CCEEE------EECCHH
Q 009734 2 GDVVLNDEELKEMNG---------NEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS-SYRVT------AVPDGL 65 (527)
Q Consensus 2 ~~~~~~~~~~~~~~~---------~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~------~a~dg~ 65 (527)
|.++|+.+|++.|.. .+++| +=+ |=.|.....+.++.+++.. ++.++ .+.+..
T Consensus 63 gdF~Ys~~E~~~M~~di~~~~~~GadGvV----------~G~-L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~ 131 (248)
T PRK11572 63 GDFCYSDGEFAAMLEDIATVRELGFPGLV----------TGV-LDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPL 131 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCEEE----------Eee-ECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHH
Confidence 678999999999872 22222 001 1124455666677777654 44443 356999
Q ss_pred HHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 66 KAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
+||+.|.... +|=||+-=.-+ -.+|++.|++|.+.. .. .+||..+--..+.+.+....|+..|-
T Consensus 132 ~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a--~~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 132 NALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAAS--DG-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred HHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhc--CC-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 9999998765 99999976666 478999999997754 23 34666665567777676789988886
No 120
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=79.73 E-value=33 Score=33.53 Aligned_cols=81 Identities=21% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeCC-------CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 009734 50 LLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVD-------LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 50 lL~~~G-y~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~-------MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~ 120 (527)
.+++.+ ..+ ..+.+..++...... . +|+|.+... ....-.+++++.|++.- ++|||...+-.+.+
T Consensus 117 ~~~~~g~~~iiv~v~t~~ea~~a~~~-G--~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~ 190 (219)
T cd04729 117 RIHEEYNCLLMADISTLEEALNAAKL-G--FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSPE 190 (219)
T ss_pred HHHHHhCCeEEEECCCHHHHHHHHHc-C--CCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCHH
Confidence 333344 544 346788888666653 3 788765321 12223578889987642 68999988888999
Q ss_pred HHHHHHHcCCCEEEeC
Q 009734 121 TVYKCMMRGAADYLVK 136 (527)
Q Consensus 121 ~~~~al~~GA~DyL~K 136 (527)
.+.+++..||+.+++-
T Consensus 191 ~~~~~l~~GadgV~vG 206 (219)
T cd04729 191 QAAKALELGADAVVVG 206 (219)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999999998754
No 121
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=78.96 E-value=11 Score=38.66 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEE
Q 009734 33 RVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIi 112 (527)
.|-+.-.++.....+..+|...-|.+..+.++.+.++.++.+.+.+|++|+.... .-..++.+|.+... -+|+|+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~---~~~~~~~~L~e~g~--LLPaVi 76 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSP---LLPPLFNQLYEQGI--LLPAVI 76 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTS---TTHHHHHHHHHCT------EEE
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCC---CcHHHHHHHHHcCc--cccEEE
Confidence 3556667788899999999988899999999999999999888889999998644 44667888877653 579998
Q ss_pred EecC
Q 009734 113 MSSQ 116 (527)
Q Consensus 113 lSa~ 116 (527)
+...
T Consensus 77 l~~~ 80 (283)
T PF07688_consen 77 LGSS 80 (283)
T ss_dssp ES--
T ss_pred EecC
Confidence 8663
No 122
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=78.81 E-value=18 Score=36.64 Aligned_cols=113 Identities=18% Similarity=0.226 Sum_probs=67.4
Q ss_pred CEEEEEecCH----HHHHHH--HHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-----HHHHHH
Q 009734 32 LRVLLVEADD----STRQIV--TALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-----FALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~----~~r~~L--~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-----lelL~~ 98 (527)
+|+=|+.|+. ...+.+ .+.|-+.||.|... .|.--|-++.+. . . .+++-+.-|-.+| -..++.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~-G--c-aavMPlgsPIGSg~Gi~n~~~l~~ 169 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA-G--C-AAVMPLGSPIGSGRGIQNPYNLRI 169 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT-T----SEBEEBSSSTTT---SSTHHHHHH
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC-C--C-CEEEecccccccCcCCCCHHHHHH
Confidence 5666666653 233333 34577889998763 455555554443 3 2 3555566664444 367778
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVW 151 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K-----P~~~eeL~~~L~~v~ 151 (527)
|++.. ++|||+=.+-.....+..+|++|++..|+- --++-.+..+++...
T Consensus 170 i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV 224 (247)
T PF05690_consen 170 IIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAV 224 (247)
T ss_dssp HHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHH
Confidence 87653 899999999999999999999999999865 455666665655554
No 123
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=78.33 E-value=24 Score=35.86 Aligned_cols=100 Identities=11% Similarity=0.030 Sum_probs=66.9
Q ss_pred HHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 009734 47 VTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (527)
Q Consensus 47 L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~ 124 (527)
|++.|+.-..- +........+.+.+.... ||.|++|++--.+|--++...++..... .++.|+=....+...+.+
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~-g~~~~VRvp~~~~~~i~r 79 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGS-ASAPVVRPPWNEPVIIKR 79 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhc-CCCcEEECCCCCHHHHHH
Confidence 45556543322 222233345566666544 9999999999999988888888776543 344444445567889999
Q ss_pred HHHcCCCEEEeCCCC-HHHHHHHHHH
Q 009734 125 CMMRGAADYLVKPVR-RNELRNLWQH 149 (527)
Q Consensus 125 al~~GA~DyL~KP~~-~eeL~~~L~~ 149 (527)
+++.||++.++-=++ .++.+.+++.
T Consensus 80 ~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 80 LLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred HhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 999999999877665 4555555443
No 124
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=78.33 E-value=14 Score=32.21 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=50.7
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCC-CCeEEE
Q 009734 38 EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICK-NIPVIM 112 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~Lr~~~~~~-~iPVIi 112 (527)
|..+.-...+..+|+..|+++.... ...+.++.+... .||+|.+-..+... ..+..+..+++.. + +++|++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~--p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKEL--GIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhc--CCCCeEEE
Confidence 5567777888999999999988643 556666666654 49999999877653 3466666666543 4 677765
Q ss_pred E
Q 009734 113 M 113 (527)
Q Consensus 113 l 113 (527)
=
T Consensus 86 G 86 (125)
T cd02065 86 G 86 (125)
T ss_pred e
Confidence 3
No 125
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.40 E-value=24 Score=36.58 Aligned_cols=97 Identities=9% Similarity=0.030 Sum_probs=62.8
Q ss_pred EEEEEecCHHHHHHHHHHHHh---C-C-CE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 33 RVLLVEADDSTRQIVTALLRK---S-S-YR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~---~-G-y~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.|||-|.+-.+. .+...++. . . .. .+.+.+.++|.+.++.. +|+|++| +|+--+--++...++.....+
T Consensus 156 ~vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LD-n~~~e~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 156 AILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLD-NMTPEEIREVIEALKREGLRE 230 (278)
T ss_pred cEEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHHhcCcCC
Confidence 378888886655 56665532 2 2 22 34588999999999753 7999999 443223334444444322112
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
-..|..|+--..+.+.+....|+|.+-+
T Consensus 231 -~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 231 -RVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred -CEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 2466678888999999999999876643
No 126
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=77.39 E-value=26 Score=35.68 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 46 IVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 46 ~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
.|+..|+.-... +........+.+.+.... ||.|++|++--.+|--++...|+...... ++.|+=....+...+.
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g-~~~lVRvp~~~~~~i~ 85 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSA-SAPVVRVPTNEPVIIK 85 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcC-CCcEEECCCCCHHHHH
Confidence 466666653322 222233345566666554 99999999999999888888887665433 4444444555788999
Q ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHH
Q 009734 124 KCMMRGAADYLVKPVR-RNELRNLWQH 149 (527)
Q Consensus 124 ~al~~GA~DyL~KP~~-~eeL~~~L~~ 149 (527)
++++.||+..+.-=+. .++.+.+++.
T Consensus 86 r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 86 RLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 9999999999877655 5555555544
No 127
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=77.00 E-value=26 Score=36.56 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 009734 47 VTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 47 L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~ 120 (527)
+-..|+..|..|.. +.+.++|.+..+. . +|.|++.-.-. ...-+.++.++++. .++|||+--+-.+..
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~-G--aD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA-G--ADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVIAAGGIADGR 174 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc-C--CCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEEEECCCCCHH
Confidence 55566667877654 6788888766654 3 89998844211 22348889998764 268999988888999
Q ss_pred HHHHHHHcCCCEEEeC
Q 009734 121 TVYKCMMRGAADYLVK 136 (527)
Q Consensus 121 ~~~~al~~GA~DyL~K 136 (527)
.+..++.+||+...+=
T Consensus 175 ~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 175 GMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHcCCCEeecc
Confidence 9999999999988754
No 128
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=76.67 E-value=33 Score=34.71 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=66.6
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 009734 47 VTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (527)
Q Consensus 47 L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~ 124 (527)
|+..|+.-.. -+.........++.+.... +|.|++|++--.+|--++...|+........++|= ....+...+.+
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VR-v~~~~~~~i~~ 79 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVR-PAIGDPVLIKQ 79 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEE-CCCCCHHHHHH
Confidence 4555654322 2222333345566665544 99999999998888888888887654323334444 44456678899
Q ss_pred HHHcCCCEEEe-CCCCHHHHHHHHHHH
Q 009734 125 CMMRGAADYLV-KPVRRNELRNLWQHV 150 (527)
Q Consensus 125 al~~GA~DyL~-KP~~~eeL~~~L~~v 150 (527)
++..||++.++ |--+.++++.+++.+
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 99999999864 566777777666654
No 129
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=76.56 E-value=31 Score=35.49 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=67.0
Q ss_pred HHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 46 IVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 46 ~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
.|++.|+.-... .........+.+.+.... ||.|++|++--.+|--++...|+......-.|+| =....+...+.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lV-Rvp~~~~~~i~ 84 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVI-RPVEGSKPLIK 84 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEE-ECCCCCHHHHH
Confidence 356666553322 222223345556666544 9999999999998888888888766543334444 44556788889
Q ss_pred HHHHcCCCEEEeCCCCH-HHHHHHHHH
Q 009734 124 KCMMRGAADYLVKPVRR-NELRNLWQH 149 (527)
Q Consensus 124 ~al~~GA~DyL~KP~~~-eeL~~~L~~ 149 (527)
+++++||.+.++-=++. ++.+.+++.
T Consensus 85 r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 85 QVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 99999999999887764 444444443
No 130
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=76.50 E-value=43 Score=32.84 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=49.2
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP~m-DG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.+.. ++ ++++|+.--++ .| +++++++++. .++|||+-.+-.+.+.+.+++..||+.+++
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3445556565543 66 77788754322 22 7888888765 478999888888999999999999999875
No 131
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=74.98 E-value=31 Score=34.66 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d------~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
++++++.+|.. .++||++|+-... ...+.++.++|+++.+.-.+..+++...++.+.
T Consensus 64 ~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 56667777654 2679998887553 667888999999999997666677766655553
No 132
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=74.93 E-value=28 Score=35.44 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=71.1
Q ss_pred HHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHH
Q 009734 46 IVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~ 122 (527)
.++..|+.....+-.. .++- ..+++.... ||-+++|.+-...|.-.++.+|+.....+..|||=+.. .+...+
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~-~~Ei~A~aG--fDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~I 82 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPY-MAEILATAG--FDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMI 82 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHH-HHHHHHhcC--CCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHH
Confidence 4666776544444332 2322 345665544 99999999999999999999999887777788886554 568889
Q ss_pred HHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 123 YKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 123 ~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
.+++..||..+|+-=++..|-...+
T Consensus 83 kq~LD~GAqtlliPmV~s~eqAr~~ 107 (255)
T COG3836 83 KQLLDIGAQTLLIPMVDTAEQARQA 107 (255)
T ss_pred HHHHccccceeeeeccCCHHHHHHH
Confidence 9999999999998877655544333
No 133
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=74.36 E-value=24 Score=34.48 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=48.1
Q ss_pred cccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 19 ~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
|...-|- +.|...++++||-+......|++-++.++. ++.. ..|...++..+... ..||+|++|--..
T Consensus 55 GaLGlEA-lSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDPPy~ 125 (187)
T COG0742 55 GALGLEA-LSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDPPYA 125 (187)
T ss_pred cHhHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCCCCc
Confidence 4444444 456668999999999999999999988773 3333 45666777766543 2499999995444
No 134
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=73.45 E-value=45 Score=36.76 Aligned_cols=105 Identities=15% Similarity=0.085 Sum_probs=57.0
Q ss_pred cCcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC--CCCC-CCHHHHHHHHHhc
Q 009734 29 RMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPS-ISGFALLTLVMEH 102 (527)
Q Consensus 29 ~~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl--~MP~-mDGlelL~~Lr~~ 102 (527)
....+|+||+-|.. ....++...+..|+.+..+.+..++.+.++.. .+|+||+|. .+|. .+-++-+..+...
T Consensus 250 ~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLIDTaGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 250 HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILIDTAGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEeCCCCCccCHHHHHHHHHHHHh
Confidence 34578999998862 22334444455677666666677777777643 489999996 2221 1223233332221
Q ss_pred -c-cCCCCeEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 009734 103 -E-ICKNIPVIMMSSQDSVSTVYKCM----MRGAADYLV 135 (527)
Q Consensus 103 -~-~~~~iPVIilSa~~d~~~~~~al----~~GA~DyL~ 135 (527)
. ..+.-.++++++......+..++ ..|.+.+|.
T Consensus 328 ~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 328 FGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred hcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1 01223566777766554444433 355666653
No 135
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=73.41 E-value=65 Score=31.46 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=61.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~-------mDGlelL~~Lr~~ 102 (527)
....+++-+.. . ..+...++..+..+.. +.+..++.+..+ .. .|.|+++-.-++ ...+++++++++.
T Consensus 80 g~d~v~l~~~~-~-~~~~~~~~~~~i~~i~~v~~~~~~~~~~~-~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~ 154 (236)
T cd04730 80 GVPVVSFSFGP-P-AEVVERLKAAGIKVIPTVTSVEEARKAEA-AG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDA 154 (236)
T ss_pred CCCEEEEcCCC-C-HHHHHHHHHcCCEEEEeCCCHHHHHHHHH-cC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHH
Confidence 34555555442 2 2333444445655544 456666555444 33 788887542111 2467888888764
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
. ++||++.-+-...+.+.+++..|++..++-
T Consensus 155 ~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 155 V---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred h---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 2 689999888878888999999999988764
No 136
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=72.72 E-value=32 Score=33.05 Aligned_cols=79 Identities=9% Similarity=0.065 Sum_probs=56.9
Q ss_pred HHHhCCCEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc
Q 009734 50 LLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR 128 (527)
Q Consensus 50 lL~~~Gy~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~ 128 (527)
..+..+..+ ..+.+..++.+.++.. +|+|-++- .+.. |.++++.++.. .+++|++.+.+- +.+.+.+.++.
T Consensus 92 ~~~~~~~~~i~gv~t~~e~~~A~~~G---ad~i~~~p-~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~ 163 (190)
T cd00452 92 AANRAGIPLLPGVATPTEIMQALELG---ADIVKLFP-AEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAA 163 (190)
T ss_pred HHHHcCCcEECCcCCHHHHHHHHHCC---CCEEEEcC-Cccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHC
Confidence 333445543 3477999998887643 79998853 3444 99999999653 357898887776 78899999999
Q ss_pred CCCEEEeC
Q 009734 129 GAADYLVK 136 (527)
Q Consensus 129 GA~DyL~K 136 (527)
|++..-+-
T Consensus 164 G~~~v~v~ 171 (190)
T cd00452 164 GVVAVGGG 171 (190)
T ss_pred CCEEEEEc
Confidence 98777544
No 137
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=72.47 E-value=45 Score=32.49 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=54.1
Q ss_pred HhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEe-C--CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH
Q 009734 52 RKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTE-V--DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM 127 (527)
Q Consensus 52 ~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlD-l--~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~ 127 (527)
...|..+. .+.+..++.+..+. . +|.|.+- . ...+ .+++++++|++.- ..++|||...+-.+.+.+.+++.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~-g--~~~i~~t~~~~~~~~-~~~~~~~~l~~~~-~~~~pvia~gGI~s~edi~~~~~ 192 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL-G--AKIIGINNRDLKTFE-VDLNTTERLAPLI-PKDVILVSESGISTPEDVKRLAE 192 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc-C--CCEEEEeCCCccccC-cCHHHHHHHHHhC-CCCCEEEEEcCCCCHHHHHHHHH
Confidence 44677654 46777776666553 2 6777654 1 1111 2357778886541 13689999999999999999999
Q ss_pred cCCCEEEe
Q 009734 128 RGAADYLV 135 (527)
Q Consensus 128 ~GA~DyL~ 135 (527)
+||+.+++
T Consensus 193 ~Ga~gviv 200 (217)
T cd00331 193 AGADAVLI 200 (217)
T ss_pred cCCCEEEE
Confidence 99999974
No 138
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=71.83 E-value=32 Score=32.72 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=50.0
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeCCCCC--------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCC
Q 009734 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS--------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (527)
Q Consensus 60 ~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~ 131 (527)
.+.+..++.+..+. .+|+|+++-..|. ..|+++++.+.+.. +++||+++.+- ..+.+.+++..|++
T Consensus 102 s~h~~~e~~~a~~~---g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~ 175 (196)
T TIGR00693 102 STHNLEELAEAEAE---GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGAD 175 (196)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCC
Confidence 35677777665543 3899998766552 24789999886542 46898887765 57888899999998
Q ss_pred EEEe
Q 009734 132 DYLV 135 (527)
Q Consensus 132 DyL~ 135 (527)
.+.+
T Consensus 176 gva~ 179 (196)
T TIGR00693 176 GVAV 179 (196)
T ss_pred EEEE
Confidence 8753
No 139
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=71.82 E-value=41 Score=34.29 Aligned_cols=115 Identities=18% Similarity=0.222 Sum_probs=71.8
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
|+.+..+...+++|+.+.+. ...++++.+..+. .|.......+..+++.. .|++++=.. .+.-|+-+++.+.
T Consensus 219 ~~~l~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----~d~~v~ps~-~E~~~~~~~EAma 292 (371)
T cd04962 219 FAKVRKEVPARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLSI----ADLFLLPSE-KESFGLAALEAMA 292 (371)
T ss_pred HHHHHhcCCceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHHh----cCEEEeCCC-cCCCccHHHHHHH
Confidence 44444444567778766543 3456666666554 35544444444455543 588876543 3344677777763
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||... ... ..+.+..|..+|+.+|-+.++|...+..++.
T Consensus 293 -----~g~PvI~s~-~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 293 -----CGVPVVASN-AGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -----cCCCEEEeC-CCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 257888643 222 3455667888999999999999998887764
No 140
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=71.19 E-value=39 Score=34.36 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=65.9
Q ss_pred CEEEEEecCH------HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH-----HHHHH
Q 009734 32 LRVLLVEADD------STRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-----ALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~------~~r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl-----elL~~ 98 (527)
+|+=|+-|+. .-.-.-.+.|-+.||.|... .|.--|-++.+ .. =.+++-+--|-.+|. ..|+.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee-~G---caavMPl~aPIGSg~G~~n~~~l~i 176 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEE-AG---CAAVMPLGAPIGSGLGLQNPYNLEI 176 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHh-cC---ceEeccccccccCCcCcCCHHHHHH
Confidence 5665555543 22233345677789998764 35555544443 33 256666666654443 56777
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
|++.. ++|||+=.+-+....+..+|++|++..|+-
T Consensus 177 iie~a---~VPviVDAGiG~pSdAa~aMElG~DaVL~N 211 (262)
T COG2022 177 IIEEA---DVPVIVDAGIGTPSDAAQAMELGADAVLLN 211 (262)
T ss_pred HHHhC---CCCEEEeCCCCChhHHHHHHhcccceeehh
Confidence 77653 899999999999999999999999999865
No 141
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=70.72 E-value=34 Score=39.35 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
...-..|+..||.+.. +.++...+..|...+ ||.|=+|-.+- +.....+++.|.......++.|| ..+..
T Consensus 681 ~~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe 757 (799)
T PRK11359 681 FKRIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVE 757 (799)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 3445567888998765 678888888887755 99999997542 12234556655443222345555 57888
Q ss_pred CHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 009734 118 SVSTVYKCMMRGAAD----YLVKPVRRNELRNLWQH 149 (527)
Q Consensus 118 d~~~~~~al~~GA~D----yL~KP~~~eeL~~~L~~ 149 (527)
+.+....+.++|++. |+.||...++|...|+.
T Consensus 758 ~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 758 TKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred CHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 999999999999873 57899999999876554
No 142
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=70.12 E-value=79 Score=30.06 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=65.9
Q ss_pred hhcCcCEEEEEecCH--HHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHcCCCCceEEEEeCCC-C----CCCHHHH
Q 009734 27 LQRMALRVLLVEADD--STRQIVTALLRKSSYRVT----AVPDGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFAL 95 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~--~~r~~L~~lL~~~Gy~V~----~a~dg~eALe~L~~~~~~pDLVLlDl~M-P----~mDGlel 95 (527)
........+++.+.. .....+.+.+++.|..+. .+.+..++++.+.. ..|.|.+...- + ...+.+.
T Consensus 73 ~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~ 149 (202)
T cd04726 73 AFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPEDD 149 (202)
T ss_pred HHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCHHH
Confidence 334445566665543 234455566666777654 35588888875542 37888874211 1 2456777
Q ss_pred HHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++++++. .++||++.-+- +.+.+.++++.||+.++.-
T Consensus 150 i~~~~~~---~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 150 LKKVKKL---LGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HHHHHhh---cCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 7877654 46788776665 5889999999999988643
No 143
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=69.87 E-value=5.7 Score=38.60 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=37.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE 84 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD 84 (527)
|||||....+-..|..+|++.|+++..+......++.+... .||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999999888766443333444332 38888873
No 144
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=69.79 E-value=40 Score=33.99 Aligned_cols=103 Identities=15% Similarity=0.190 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
....+-..|+..|+.+.. +..|...+..|..-+ ||+|=+|-.+- ......+++.|-.....-++.|| .-+
T Consensus 137 ~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vv-aEG 213 (256)
T COG2200 137 TALALLRQLRELGVRIALDDFGTGYSSLSYLKRLP--PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVV-AEG 213 (256)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCC--CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEE-Eee
Confidence 444556667788987554 889999999998755 99999987542 23344566666544333355555 456
Q ss_pred CCCHHHHHHHHHcCCC----EEEeCCCCHHHHHHHHH
Q 009734 116 QDSVSTVYKCMMRGAA----DYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~----DyL~KP~~~eeL~~~L~ 148 (527)
....+....+.++|++ .|+.||....++...+.
T Consensus 214 VEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 214 VETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred cCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 6778888888999986 34788999877765554
No 145
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.71 E-value=62 Score=32.43 Aligned_cols=90 Identities=12% Similarity=-0.032 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCEEEEE-C--CHHHHHHHHHcCCCCceEEEEeCCCCCC------CHHHHHHHHHhcccCCCCeEEE
Q 009734 42 STRQIVTALLRKSSYRVTAV-P--DGLKAWEVLKGRPRNIDLILTEVDLPSI------SGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a-~--dg~eALe~L~~~~~~pDLVLlDl~MP~m------DGlelL~~Lr~~~~~~~iPVIi 112 (527)
.....+...+++.|.++..+ . +..+.++.+.... ..++++ -.+|+. +-.+.++++++.. ++.||++
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~--~~~~i~v 190 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLV--GNKYLVV 190 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhc--CCCCEEE
Confidence 34455667778889876553 2 2244444443333 467767 566663 2245666676543 3457654
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeC
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~K 136 (527)
=.+-.+.+.+.++..+||+.+++-
T Consensus 191 ~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 191 GFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEEC
Confidence 444447888889899999999976
No 146
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=69.57 E-value=13 Score=35.67 Aligned_cols=76 Identities=14% Similarity=0.184 Sum_probs=46.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE-eCC-CCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT-EVD-LPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl-Dl~-MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|||||....+-..+..+|+..|+.+....+-...++.+... .||.||+ -=- -|.-++.+ ...|+.. ...+||+
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iilsgGpg~p~~~~~~-~~~i~~~--~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEAL--LPLLIVISPGPCTPNEAGIS-LEAIRHF--AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcchh-HHHHHHh--ccCCCEE
Confidence 89999999999999999999999887765322223333332 3886666 111 22222322 3333332 1368998
Q ss_pred EEe
Q 009734 112 MMS 114 (527)
Q Consensus 112 ilS 114 (527)
-+.
T Consensus 77 GIC 79 (188)
T TIGR00566 77 GVC 79 (188)
T ss_pred EEC
Confidence 765
No 147
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=69.39 E-value=21 Score=35.52 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=39.2
Q ss_pred HHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~ 149 (527)
+++++.|.. .-.+|||+|+-+. ....+..+.++||++||+--+.++|-...-+.
T Consensus 84 emvk~ar~~--gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne 143 (268)
T KOG4175|consen 84 EMVKEARPQ--GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNE 143 (268)
T ss_pred HHHHHhccc--CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHH
Confidence 444444332 2468999998654 67788899999999999998888886644333
No 148
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=68.54 E-value=54 Score=35.63 Aligned_cols=107 Identities=13% Similarity=0.243 Sum_probs=67.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+++||-|.+. +..++++.+.........-..++...++.. .|++++=-. .+.-|+-+++.+. ..+||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA-----~G~PV 358 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA-----SGVPV 358 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH-----cCCCE
Confidence 467888877654 445666555443333334455677777754 578776332 2334666777763 36799
Q ss_pred EEEecCCCHHHHHHHHHc---CCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 111 IMMSSQDSVSTVYKCMMR---GAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~---GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|.... .... +.+.. |-.+|+..|-+.++|...|..++.
T Consensus 359 I~s~~-gg~~---eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 359 VAARA-GGIP---DIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EEcCC-CCcH---hhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 85433 3322 33344 889999999999999999988874
No 149
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=68.38 E-value=54 Score=31.71 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=59.7
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeC-CCCC-CCHHHHHHHHHhccc
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEV-DLPS-ISGFALLTLVMEHEI 104 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-------dg~eALe~L~~~~~~pDLVLlDl-~MP~-mDGlelL~~Lr~~~~ 104 (527)
|||-|-|...++.++..-++.|-++...+ +|.+.++++...+..|=+|++|- ..++ ..|-+.++.+..++.
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667788888889999999999988754 89999999998876677777754 4444 567888888877642
Q ss_pred CCCCeEEEEecC
Q 009734 105 CKNIPVIMMSSQ 116 (527)
Q Consensus 105 ~~~iPVIilSa~ 116 (527)
-.=+-+|.+.+.
T Consensus 83 IeVLG~iAVASn 94 (180)
T PF14097_consen 83 IEVLGAIAVASN 94 (180)
T ss_pred ceEEEEEEEEec
Confidence 222334444443
No 150
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=68.27 E-value=48 Score=30.88 Aligned_cols=69 Identities=19% Similarity=0.175 Sum_probs=49.9
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCCC--------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCE
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPS--------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP~--------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~D 132 (527)
+.+..++.+.++. .+|.|++.-..|. ..|++.++++++. .++||++..+- ..+.+.+++..|++.
T Consensus 102 ~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~ 174 (196)
T cd00564 102 THSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADG 174 (196)
T ss_pred CCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCE
Confidence 4566677666553 2899998755442 3567888888764 46899988776 468888999999998
Q ss_pred EEeC
Q 009734 133 YLVK 136 (527)
Q Consensus 133 yL~K 136 (527)
+.+=
T Consensus 175 i~~g 178 (196)
T cd00564 175 VAVI 178 (196)
T ss_pred EEEe
Confidence 8643
No 151
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=68.27 E-value=18 Score=34.70 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=53.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC--CCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|||||....+-..|..+|++.|+++..+.+....++.+... .||.||+-=. -|..++. ....++. ....+||+
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iils~GPg~p~~~~~-~~~~~~~--~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDAL--KPQKIVISPGPCTPDEAGI-SLDVIRH--YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCEEEEcCCCCChHHCCc-cHHHHHH--hcCCCCEE
Confidence 89999999999999999999999877765432223333332 3888877421 2333332 1222322 12468988
Q ss_pred EEecCCCHHHHHHHHHcCC
Q 009734 112 MMSSQDSVSTVYKCMMRGA 130 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA 130 (527)
-+. .....-+..+|+
T Consensus 77 GIC----lG~Q~la~a~Gg 91 (187)
T PRK08007 77 GVC----LGHQAMAQAFGG 91 (187)
T ss_pred EEC----HHHHHHHHHcCC
Confidence 665 333444555665
No 152
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=67.66 E-value=24 Score=32.60 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=46.0
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHH----------hCCCEEEEEC----------CHHHHHHHHHcCCCCceEEE
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLR----------KSSYRVTAVP----------DGLKAWEVLKGRPRNIDLIL 82 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~----------~~Gy~V~~a~----------dg~eALe~L~~~~~~pDLVL 82 (527)
|-..+.....+|++++-|+.....+..++. ..++.+.... ...++++.++.. .+|+||
T Consensus 19 l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~ii 96 (148)
T cd03114 19 LITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATPEVIRVLDAA--GFDVII 96 (148)
T ss_pred HHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHHHHHHHHHhc--CCCEEE
Confidence 333444556899999977543332222221 1233332222 235566666553 499999
Q ss_pred EeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 83 TEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 83 lDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+|. ++..- ..+..+.. .+..||+++..
T Consensus 97 IDt--aG~~~-~~~~~~~~----Ad~~ivv~tpe 123 (148)
T cd03114 97 VET--VGVGQ-SEVDIASM----ADTTVVVMAPG 123 (148)
T ss_pred EEC--CccCh-hhhhHHHh----CCEEEEEECCC
Confidence 998 77653 33444433 35567776654
No 153
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=67.23 E-value=67 Score=32.96 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCE------EEeCCCCHHHHHHHHHHHHHhh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD------YLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~D------yL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++.++++. .++|||...+-.+.+.+.+++..||+. +|.+|.-..++..-|..++.++
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3667777654 368999999999999999999999876 4667866666666666666554
No 154
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.87 E-value=44 Score=31.67 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=54.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS--SYRVTAVPD-------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~--Gy~V~~a~d-------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
...+|.++-..+...+.+...|++. |..++.+.+ .++.++.+.... ||+|++-+.+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4579999999999999999999865 667776543 344556666654 99999999999876 3455554
Q ss_pred hcccCCCCeEEEEe
Q 009734 101 EHEICKNIPVIMMS 114 (527)
Q Consensus 101 ~~~~~~~iPVIilS 114 (527)
..- +.+|++..
T Consensus 123 ~~l---~~~v~i~v 133 (172)
T PF03808_consen 123 QRL---PAGVIIGV 133 (172)
T ss_pred HHC---CCCEEEEE
Confidence 432 34544443
No 155
>PRK14974 cell division protein FtsY; Provisional
Probab=66.80 E-value=88 Score=33.28 Aligned_cols=107 Identities=14% Similarity=0.205 Sum_probs=56.7
Q ss_pred hhcCcCEEEEEecC---HHHHHHHHHHHHhCCCEEEEECCH-------HHHHHHHHcCCCCceEEEEeCCCCCC-CHHHH
Q 009734 27 LQRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVPDG-------LKAWEVLKGRPRNIDLILTEVDLPSI-SGFAL 95 (527)
Q Consensus 27 ~~~~~lrVLLVDDD---~~~r~~L~~lL~~~Gy~V~~a~dg-------~eALe~L~~~~~~pDLVLlDl~MP~m-DGlel 95 (527)
+.....+|+|++-| ....+.++...+..|..+.....+ .++++.++.. .+|+||+|.. +.+ .-..+
T Consensus 164 l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa-Gr~~~~~~l 240 (336)
T PRK14974 164 LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA-GRMHTDANL 240 (336)
T ss_pred HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC-CccCCcHHH
Confidence 33445789999877 344456666667777766543322 2445554443 3899999973 111 12333
Q ss_pred HHHHHhc--ccCCCCeEEEEecCCCHHHH--HHHH--HcCCCEEEeC
Q 009734 96 LTLVMEH--EICKNIPVIMMSSQDSVSTV--YKCM--MRGAADYLVK 136 (527)
Q Consensus 96 L~~Lr~~--~~~~~iPVIilSa~~d~~~~--~~al--~~GA~DyL~K 136 (527)
+..|+.. ...++..++++++....+.. .+.+ ..+.+.+|.-
T Consensus 241 m~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 241 MDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 3443321 12355556666654433333 2333 3677777543
No 156
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=66.56 E-value=21 Score=36.52 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+.+++++++|+.. .++|+|+|+-+. -.....+|.++|+++.|+-.+..++....+..+-
T Consensus 75 ~~~~~~~~~r~~~--~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~ 139 (258)
T PRK13111 75 DVFELVREIREKD--PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAK 139 (258)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHH
Confidence 4577788887432 578999998543 3456889999999999999888888776666553
No 157
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=66.47 E-value=52 Score=37.55 Aligned_cols=98 Identities=15% Similarity=0.253 Sum_probs=61.1
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
+.+....+++||.|+...+.+ ++.|+.+...+ .-.+.++.+.- .+.|+|++-..-+ .+-+.++..+|+. .
T Consensus 419 L~~~g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~--~ 489 (601)
T PRK03659 419 LMANKMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQH--F 489 (601)
T ss_pred HHhCCCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHH--C
Confidence 444567888888888765544 34577766643 33344444432 2367777754333 2345566666654 3
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
|+++||+-+ .+.....+..++||+..+.
T Consensus 490 p~~~IiaRa--~~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 490 PHLHILARA--RGRVEAHELLQAGVTQFSR 517 (601)
T ss_pred CCCeEEEEe--CCHHHHHHHHhCCCCEEEc
Confidence 778888655 3567777888999987763
No 158
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.28 E-value=1e+02 Score=32.71 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=64.9
Q ss_pred EEEEEe----cCHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHcCCCCceEEEEeCC----------CC-CCC--H
Q 009734 33 RVLLVE----ADDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD----------LP-SIS--G 92 (527)
Q Consensus 33 rVLLVD----DD~~~r~~L~~lL~~~G-y~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~----------MP-~mD--G 92 (527)
.++.|| +.....+.++.+=+... ..|.. +.+.++|..+++.. +|+|.+-.. .. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG---ad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAG---ADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC---cCEEEECCCCCcccccccccCCCCCccH
Confidence 788886 33444444444444443 44443 67889888877643 788764311 11 122 5
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+..+.+. .++|||.-.+-.....+.+|+.+||+....=
T Consensus 190 l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 6667888654 3689999888899999999999999988755
No 159
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=65.85 E-value=33 Score=32.90 Aligned_cols=92 Identities=15% Similarity=0.205 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~-----mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
.....|+..|+.+.. +..+..-+..+..-. ||.|-+|..+-. .....+++.|.......++.|| .++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 445667788998765 556666677777654 999999965431 1134556655443322345554 578888
Q ss_pred HHHHHHHHHcCCC---E-EEeCCCCH
Q 009734 119 VSTVYKCMMRGAA---D-YLVKPVRR 140 (527)
Q Consensus 119 ~~~~~~al~~GA~---D-yL~KP~~~ 140 (527)
.+....+..+|++ + |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 9999999999985 3 35677653
No 160
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.67 E-value=53 Score=33.87 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=59.2
Q ss_pred CEEEEEe--cC---HHHHHHHHHHHHhCCCEEEEECCHHHHHH--------HHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVE--AD---DSTRQIVTALLRKSSYRVTAVPDGLKAWE--------VLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVD--DD---~~~r~~L~~lL~~~Gy~V~~a~dg~eALe--------~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
|||.||- .. ......+..+|+..|+++.......+.+. .+.. ..+|+||+= |.||. +++.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~i----GGDGT-lL~a 73 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEE--MDVDFIIAI----GGDGT-ILRI 73 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccc--cCCCEEEEE----eCcHH-HHHH
Confidence 4677773 22 23445566677788888777532221111 1111 137777762 77884 4455
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++ . ...++||+.+.. |-.+||. .+..+++...|..+.+..
T Consensus 74 ~~-~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 74 EH-K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred HH-h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 54 2 224789887763 4446665 677899998998887553
No 161
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.60 E-value=46 Score=38.17 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=61.0
Q ss_pred hhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
.+.+....+.+||.|+...+.++ +.|+.+.... +-.+.++...- .+.|+|++-..-+.. -..++..+|+.
T Consensus 418 ~L~~~g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~~-n~~i~~~ar~~-- 488 (621)
T PRK03562 418 LLLSSGVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQT-SLQLVELVKEH-- 488 (621)
T ss_pred HHHhCCCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHHH-HHHHHHHHHHh--
Confidence 34555678888888888665554 3578766643 23334443332 347888876533332 35556666654
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.|+++||+-+ .+.....+..++||+..+
T Consensus 489 ~p~~~iiaRa--~d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 489 FPHLQIIARA--RDVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CCCCeEEEEE--CCHHHHHHHHHCCCCEEe
Confidence 3788887655 346777788899998654
No 162
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=65.31 E-value=13 Score=38.01 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=50.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHH----------
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFA---------- 94 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGle---------- 94 (527)
|||||+-..-.+...|...|...|++|+... +..+..+.++... ||+||--..+...+..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 6999999999999999999999999888762 5566666766544 99998765443322211
Q ss_pred --HHHHHHhcccCCCCeEEEEecC
Q 009734 95 --LLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 95 --lL~~Lr~~~~~~~iPVIilSa~ 116 (527)
....|.+.-...++++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1112221111246799999874
No 163
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=65.27 E-value=12 Score=38.10 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=39.9
Q ss_pred hcCcCEEEEEe------cC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 009734 28 QRMALRVLLVE------AD--DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE 84 (527)
Q Consensus 28 ~~~~lrVLLVD------DD--~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD 84 (527)
++|+++|.|+- .+ ......+...|++.||+|..+....+.++.++.. .||+||.=
T Consensus 1 ~~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~--~~D~v~~~ 63 (304)
T PRK01372 1 PKMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKEL--GFDRVFNA 63 (304)
T ss_pred CCCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccC--CCCEEEEe
Confidence 46778888887 22 2245678888899999998886666677777654 49999964
No 164
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=65.13 E-value=71 Score=34.04 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=64.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEE---------------EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRV---------------TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFA 94 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V---------------~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGle 94 (527)
...+++||-+.+.-...+.++++..|+.. ..+....+...++.. -|++++--.....-|..
T Consensus 261 ~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~----aDi~~v~~S~~e~~g~~ 336 (425)
T PRK05749 261 PNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAI----ADIAFVGGSLVKRGGHN 336 (425)
T ss_pred CCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHh----CCEEEECCCcCCCCCCC
Confidence 34678888887765567788887777642 222223344444432 58876632221223555
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al-~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+++.+. ..+|||+--.......+.+.+ .. +++..|-+.++|...|..++.
T Consensus 337 ~lEAma-----~G~PVI~g~~~~~~~e~~~~~~~~---g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 337 PLEPAA-----FGVPVISGPHTFNFKEIFERLLQA---GAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHH-----hCCCEEECCCccCHHHHHHHHHHC---CCeEEECCHHHHHHHHHHHhc
Confidence 666653 257898632223333333333 33 457778899999999988764
No 165
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=64.99 E-value=8.6 Score=36.90 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=46.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC--CCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|||||....+-..|..+|+..|++|..+.+..--++.++.. .||.||+-=. -|..++. .+..++.. ...+||+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~-~~~~i~~~--~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGI-SLAVIRHF--ADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCC-chHHHHHh--cCCCCEE
Confidence 89999999999999999999999888776432122334332 2787776321 1222222 12222221 2467888
Q ss_pred EEe
Q 009734 112 MMS 114 (527)
Q Consensus 112 ilS 114 (527)
-+.
T Consensus 77 GIC 79 (191)
T PRK06774 77 GVC 79 (191)
T ss_pred EEC
Confidence 665
No 166
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=64.98 E-value=26 Score=33.58 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~-----mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
.+...|+..|+.+.. +..+...++.+..-. ||.|-+|..+.. .....+++.|.......+++|| .++-.+
T Consensus 136 ~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 212 (240)
T cd01948 136 ATLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVET 212 (240)
T ss_pred HHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCC
Confidence 344556778998766 456666677776644 999999965431 2335566655543322345555 688889
Q ss_pred HHHHHHHHHcCCCE----EEeCCCCH
Q 009734 119 VSTVYKCMMRGAAD----YLVKPVRR 140 (527)
Q Consensus 119 ~~~~~~al~~GA~D----yL~KP~~~ 140 (527)
.+....+..+|++. |+.||...
T Consensus 213 ~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 213 EEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHHcCCCeeeeceeccCCCC
Confidence 99999999999843 35566643
No 167
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=64.67 E-value=1.2e+02 Score=31.05 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=65.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSS--YRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
+++||.||---..........|...+ +.++.+ .+...|-+..+... +..+..|+ +.+-+.. .
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~~-----------~~ll~~~-~ 67 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTDL-----------EELLADP-D 67 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCCH-----------HHHhcCC-C
Confidence 45889999876566555555555543 466655 46665555555432 22233332 3332221 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHH
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVW 151 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~ 151 (527)
.++-+|........+.+.+|+++|..=|+-||+. .++...+++.+-
T Consensus 68 iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 68 IDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred CCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 2444444445568899999999999999999995 566665555443
No 168
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=64.19 E-value=1.1e+02 Score=31.96 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=60.7
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeC---------------------------------CC--CCCCHHHHHHHHHhcccC
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEV---------------------------------DL--PSISGFALLTLVMEHEIC 105 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl---------------------------------~M--P~mDGlelL~~Lr~~~~~ 105 (527)
+.+..+|+...+.. +|+|=+=+ .. ..--++++++++.+..
T Consensus 119 ~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-- 193 (283)
T cd04727 119 ARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-- 193 (283)
T ss_pred CCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc--
Confidence 67888888887653 78887654 11 1234789999997752
Q ss_pred CCCeEE--EEecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHHh
Q 009734 106 KNIPVI--MMSSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVI--ilSa~~d~~~~~~al~~GA~DyL~K-----P~~~eeL~~~L~~v~rr 153 (527)
.+||| ...+-...+.+.++++.||+.+++= .-++.+....+...+..
T Consensus 194 -~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 -RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred -CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 58997 6666679999999999999999643 33555555555555443
No 169
>PRK04302 triosephosphate isomerase; Provisional
Probab=63.17 E-value=1.3e+02 Score=29.69 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=58.8
Q ss_pred CcCEEEEEecC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC-C-CC---C-----CC-
Q 009734 30 MALRVLLVEAD------DSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV-D-LP---S-----IS- 91 (527)
Q Consensus 30 ~~lrVLLVDDD------~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl-~-MP---~-----mD- 91 (527)
.....+|+.|. ....+.+.. ....|+.+. ++.+..++.. +.... +|+|-..- + +. + -.
T Consensus 84 ~G~~~vii~~ser~~~~~e~~~~v~~-a~~~Gl~~I~~v~~~~~~~~-~~~~~--~~~I~~~p~~~igt~~~~~~~~~~~ 159 (223)
T PRK04302 84 AGAVGTLINHSERRLTLADIEAVVER-AKKLGLESVVCVNNPETSAA-AAALG--PDYVAVEPPELIGTGIPVSKAKPEV 159 (223)
T ss_pred cCCCEEEEeccccccCHHHHHHHHHH-HHHCCCeEEEEcCCHHHHHH-HhcCC--CCEEEEeCccccccCCCCCcCCHHH
Confidence 44555566553 122233333 344688655 4556555554 33333 67765432 1 10 1 11
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
-.++++.+++. ..++|||.-.+-...+.+..++..|++++++-
T Consensus 160 i~~~~~~ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 160 VEDAVEAVKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLA 202 (223)
T ss_pred HHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEe
Confidence 23555666653 24689998888889999999999999999754
No 170
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=63.02 E-value=88 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=42.7
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE------EeCCCCHHHHHHHHHHHHHhh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY------LVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy------L~KP~~~eeL~~~L~~v~rr~ 154 (527)
++++.++++. .++|||...+-.+.+.+.+++..||+.. +..|.-...++.-+.+++.++
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 6788888764 2699999999999999999999998543 334655556665555555443
No 171
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=62.97 E-value=59 Score=33.71 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=69.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCH----HHHHHHHHcCCCCceEEEEeCCCCCCC--HHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV--PDG----LKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a--~dg----~eALe~L~~~~~~pDLVLlDl~MP~mD--GlelL~~Lr~~ 102 (527)
..-++++||...++.+|..+=-... +... .+. ...+..++... -=.++.|-.||..+ |+.+++..++.
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~--~is~h~hne~~~~~~li~~l~~g~--~valVSDAG~P~ISDPG~~LV~~a~~~ 105 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTP--LISYHEHNEKEKLPKLIPLLKKGK--SVALVSDAGTPLISDPGYELVRAAREA 105 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCc--eecccCCcHHHHHHHHHHHHhcCC--eEEEEecCCCCcccCccHHHHHHHHHc
Confidence 3678999999998866655422111 2222 233 33445555432 34677899999865 99999999775
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC---CCCHHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK---PVRRNELRNLWQHVW 151 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K---P~~~eeL~~~L~~v~ 151 (527)
+++|+.+.+....-.+..+-.+-.+.|+.. |-...+-+..++.+.
T Consensus 106 ----gi~V~~lPG~sA~~tAL~~SGl~~~~F~F~GFLP~k~~~R~~~l~~l~ 153 (275)
T COG0313 106 ----GIRVVPLPGPSALITALSASGLPSQRFLFEGFLPRKSKERRKRLEALA 153 (275)
T ss_pred ----CCcEEecCCccHHHHHHHHcCCCCCCeeEeccCCCCccHHHHHHHHHH
Confidence 689999998776655544433334555554 333444444444443
No 172
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=62.77 E-value=67 Score=33.12 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=67.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++||.+.+. +..+...++..+.. +.......+..+++.. .|++++=-. .+.-|+-+++.+. ..+
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~pS~-~Eg~~~~~lEAma-----~G~ 297 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQA----LDLFVLPSL-AEGISNTILEAMA-----SGL 297 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh----cCEEEeccc-cccCchHHHHHHH-----cCC
Confidence 357788876543 45677777766553 3333333444555543 577765322 2334677787773 357
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||+ |.... ..+.+..|..+++..|-+.++|...|..++.
T Consensus 298 Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 298 PVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred CEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 8986 33332 2344556788999999999999999988764
No 173
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=62.71 E-value=60 Score=33.86 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHh
Q 009734 91 SGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVI--ilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~rr 153 (527)
-++++++++++. ..+||| ...+-...+.+..++++||+.+++ |.-++.+....+..++..
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578999999875 368998 666667999999999999999954 444566666555555443
No 174
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=62.61 E-value=63 Score=29.55 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=59.2
Q ss_pred hhhcCcCEEEEEecCHH-----HHHHHHHHHHhC-CCEEEE-ECCHHHHHHH-HHcCCCCceEEEEeCCCCCCCH-----
Q 009734 26 FLQRMALRVLLVEADDS-----TRQIVTALLRKS-SYRVTA-VPDGLKAWEV-LKGRPRNIDLILTEVDLPSISG----- 92 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~-----~r~~L~~lL~~~-Gy~V~~-a~dg~eALe~-L~~~~~~pDLVLlDl~MP~mDG----- 92 (527)
+........+.|..... ..+.++.+-+.. +..+.. +....+.... +.... .|.|.++-..+...+
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g--~d~i~~~~~~~~~~~~~~~~ 156 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAG--VDEVGLGNGGGGGGGRDAVP 156 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcC--CCEEEEcCCcCCCCCccCch
Confidence 33444455555554432 344444444443 454433 2211111111 23323 799998877775432
Q ss_pred --HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 93 --FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 93 --lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
...+..++. ...+||+...+-...+.+.+++..||+.+.+
T Consensus 157 ~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 157 IADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred hHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 233444433 2578999988888878899999999987764
No 175
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.20 E-value=90 Score=34.19 Aligned_cols=93 Identities=14% Similarity=0.067 Sum_probs=51.8
Q ss_pred cCcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC--CCC-CCHHHHHHHHHhc
Q 009734 29 RMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPS-ISGFALLTLVMEH 102 (527)
Q Consensus 29 ~~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~-mDGlelL~~Lr~~ 102 (527)
+...+|++|+-|+. ..+.+..+-+..|+.+..+.+..+....+.... .+|+||+|.- .+. ...++.+..+-..
T Consensus 249 ~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~ 327 (424)
T PRK05703 249 YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEF 327 (424)
T ss_pred cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 34579999998874 223455555556777766677766666665433 4899999962 121 2233344444331
Q ss_pred ccCCCCeEEEEecCCCHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~ 122 (527)
...+.-.++++++......+
T Consensus 328 ~~~~~~~~LVl~a~~~~~~l 347 (424)
T PRK05703 328 SGEPIDVYLVLSATTKYEDL 347 (424)
T ss_pred cCCCCeEEEEEECCCCHHHH
Confidence 11122235667765544433
No 176
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.17 E-value=55 Score=31.02 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=54.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~--Gy~V~~a~-------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+|.++-..+.+.+.+.+.|++. |.+++... +..+.++.+.... ||+|++-+.+|...- ++.+++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE~--~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG--ADILFVGLGAPKQEL--WIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHHH--HHHHHHH
Confidence 589999999999999999888765 56666532 2233467777655 999999999998764 3455544
Q ss_pred cccCCCCeEEEEe
Q 009734 102 HEICKNIPVIMMS 114 (527)
Q Consensus 102 ~~~~~~iPVIilS 114 (527)
.- +.+|++..
T Consensus 122 ~l---~~~v~~~v 131 (171)
T cd06533 122 RL---PVPVAIGV 131 (171)
T ss_pred HC---CCCEEEEe
Confidence 32 44566544
No 177
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=62.07 E-value=40 Score=33.02 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCCce-EEEEeCCCCC-CCH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 009734 64 GLKAWEVLKGRPRNID-LILTEVDLPS-ISG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pD-LVLlDl~MP~-mDG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~G-A~DyL~ 135 (527)
..+..+.+.... ++ ++++|...-+ ..| +++++++.+. .++|||.-.+-.+.+.+.++++.| |+..++
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 356666666543 56 7888875433 234 7888888764 258999988889999999999998 988874
No 178
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=62.07 E-value=61 Score=31.43 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=59.3
Q ss_pred cccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC-CCC-CCCHH---
Q 009734 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV-DLP-SISGF--- 93 (527)
Q Consensus 19 ~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl-~MP-~mDGl--- 93 (527)
|-.+|+.+..+-.-+|+++|-|..+-.....++...++ . -....|.+.+ +||+|+=- +-| .-||+
T Consensus 66 Gq~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~-----P---~~~~~i~~~r--~DL~lLl~p~t~wvaDG~R~~ 135 (187)
T COG3172 66 GQAAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREH-----P---FLQALIAEYR--FDLTLLLEPNTPWVADGLRSL 135 (187)
T ss_pred hhHHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCC-----c---hHHHHHhhcc--cceEEEcCCCCceeCCCcccc
Confidence 55688888888888999999999999998888865321 1 1223444444 99988721 222 23444
Q ss_pred -----------HHHHHHHhcccCCCCeEEEEecCCCHHHHHHH
Q 009734 94 -----------ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKC 125 (527)
Q Consensus 94 -----------elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~a 125 (527)
++-+.|++ .++|+|++.+.+..+....|
T Consensus 136 ~~~~~R~~F~~~l~~~L~~----~~~~~v~i~~~~y~eR~~~~ 174 (187)
T COG3172 136 GSSVQRQEFQNLLEQMLEE----NNIPFVVIEGEDYLERYLQA 174 (187)
T ss_pred ccHhHHHHHHHHHHHHHHH----hCCcEEEEcCCCHHHHHHHH
Confidence 22233333 26899999987655544444
No 179
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=62.01 E-value=1.4e+02 Score=33.24 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=67.4
Q ss_pred chHHh--hhcCcCEEEEEecC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC---
Q 009734 22 KWETF--LQRMALRVLLVEAD----DSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS--- 89 (527)
Q Consensus 22 ~~e~~--~~~~~lrVLLVDDD----~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--- 89 (527)
.|+.. |......+++||.. ......++.+-.+. +..|. .+.+.++|..+++.. .|.|.+-+ =|+
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG---ad~i~vg~-g~gs~~ 304 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAG---ADAVKVGI-GPGSIC 304 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC---CCEEEECC-CCCccc
Confidence 35554 33345788888854 22333344443343 33433 366888888888753 68876532 121
Q ss_pred ---------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 90 ---------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 90 ---------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.--++++..+++......+|||.=.+......+.+|+.+||+-.++=
T Consensus 305 ~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 11244555554322223689998788889999999999999888754
No 180
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=61.93 E-value=1.1e+02 Score=31.99 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=40.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-----CCHHHHHHHHHcCCCCceEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-----PDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-----~dg~eALe~L~~~~~~pDLVLl 83 (527)
++-|||=+|-|+...+..-.+-+++|..+... .-+....++|+... ||||++
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 160 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYR--PDILVI 160 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcC--CCEEEE
Confidence 45699999999999988888888988765542 34555667777765 999887
No 181
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=61.35 E-value=26 Score=36.85 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=62.2
Q ss_pred cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHh--CCC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCC
Q 009734 16 GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK--SSY---RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (527)
Q Consensus 16 ~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~--~Gy---~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~ 89 (527)
+.++.|.=|..+++.--.|+++|-|..+.+.=+.+|.. +|| +|.. ..||...++.+.+.. +|+||+|..-|.
T Consensus 130 ggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpv 207 (337)
T KOG1562|consen 130 GGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPV 207 (337)
T ss_pred cCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCcc
Confidence 45566666777776667899999999999999998875 466 3433 459999999887655 999999999999
Q ss_pred CCHHHHHH
Q 009734 90 ISGFALLT 97 (527)
Q Consensus 90 mDGlelL~ 97 (527)
+.+-.+..
T Consensus 208 gpa~~lf~ 215 (337)
T KOG1562|consen 208 GPACALFQ 215 (337)
T ss_pred chHHHHHH
Confidence 88876554
No 182
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.21 E-value=1.3e+02 Score=30.38 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=53.0
Q ss_pred CEEEEE-ecCHHH---HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLV-EADDST---RQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLV-DDD~~~---r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.|| +|++.- ...++..+++.|.+|+.. .|....+..++... ||+|++-.. ..++..++++++
T Consensus 138 ~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~~--~~~~~~~~~~~~ 213 (312)
T cd06346 138 KSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGG--PDALVVIGY--PETGSGILRSAY 213 (312)
T ss_pred CeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEecc--cchHHHHHHHHH
Confidence 355444 444432 344666777889887642 36677788887654 999997543 448899999998
Q ss_pred hcccCCCCeEEEEecCCCHH
Q 009734 101 EHEICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~ 120 (527)
+... ..++|..++..+..
T Consensus 214 ~~G~--~~~~~~~~~~~~~~ 231 (312)
T cd06346 214 EQGL--FDKFLLTDGMKSDS 231 (312)
T ss_pred HcCC--CCceEeeccccChH
Confidence 7654 55676655444433
No 183
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=60.84 E-value=90 Score=32.78 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=56.6
Q ss_pred HHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCC-C----C-CC-CHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 47 VTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVD-L----P-SI-SGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 47 L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~-M----P-~m-DGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
+...|+..|..|.. +.+..+|...++.. +|+|++-=. - . .. +-+.|+.+++.. .++|||.--+-.+
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iPViaAGGI~d 201 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIPVIAAGGIAD 201 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-EEEESS--S
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCcEEEecCcCC
Confidence 44567778887655 89999998887753 899887622 1 1 22 357788888765 3699998888888
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 009734 119 VSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (527)
...+..++.+||+...+=
T Consensus 202 g~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 202 GRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHHHHCT-SEEEES
T ss_pred HHHHHHHHHcCCCEeecC
Confidence 888999999999998754
No 184
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=60.82 E-value=31 Score=34.01 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=58.5
Q ss_pred cchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCC--CCceEEEEeCCCCCCCHHHH
Q 009734 21 AKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFAL 95 (527)
Q Consensus 21 ~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~--~~pDLVLlDl~MP~mDGlel 95 (527)
+.|=+.++. .-+|.-||-++...+..+..++..|+ +|.. ..++.+.+..+.... ..||+||+|.. .-+-...
T Consensus 61 l~la~~l~~-~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y 137 (205)
T PF01596_consen 61 LWLAEALPE-DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD--KRNYLEY 137 (205)
T ss_dssp HHHHHTSTT-TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST--GGGHHHH
T ss_pred HHHHHhhcc-cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc--ccchhhH
Confidence 344444543 36999999999999999999999887 3544 578888888775432 35999999984 2333444
Q ss_pred HHHHHhcccCCCCeEEEEec
Q 009734 96 LTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa 115 (527)
++.+... ...-.||++-.
T Consensus 138 ~~~~~~l--l~~ggvii~DN 155 (205)
T PF01596_consen 138 FEKALPL--LRPGGVIIADN 155 (205)
T ss_dssp HHHHHHH--EEEEEEEEEET
T ss_pred HHHHhhh--ccCCeEEEEcc
Confidence 4444322 12335665543
No 185
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=60.63 E-value=1.4e+02 Score=30.08 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=63.4
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE-E----C--CHHHHHHHHHcCCCCceEEEEeCCCCCC--CHHHHHHHHHhcccCC
Q 009734 36 LVEADDSTRQIVTALLRKSSYRVTA-V----P--DGLKAWEVLKGRPRNIDLILTEVDLPSI--SGFALLTLVMEHEICK 106 (527)
Q Consensus 36 LVDDD~~~r~~L~~lL~~~Gy~V~~-a----~--dg~eALe~L~~~~~~pDLVLlDl~MP~m--DGlelL~~Lr~~~~~~ 106 (527)
|..|.....+.++.+- ..+.-|.. . . +..+..+.+++.. .|.|.+|...|+. --++.+++|++.- +
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~aG--ad~i~Vd~~~~g~~~a~~~~I~~i~~~~--~ 190 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDDG--FDGIHVDAMYPGKPYADMDLLKILSEEF--N 190 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHcC--CCEEEEeeCCCCCchhhHHHHHHHHHhc--C
Confidence 4455555665555555 33443322 1 1 2234445555544 8999999877764 3488888887742 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
++|||..-+-.+.+.+.+++..||+...+
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 58999888888999999999999988753
No 186
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.55 E-value=1.1e+02 Score=34.41 Aligned_cols=95 Identities=11% Similarity=0.087 Sum_probs=55.2
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+....|++||.|+...+.++ +.|+.+...+ .-.+.++.+.- .+.|.|++-..-.. +-..++..+++.. ++
T Consensus 438 ~~g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~~~~-~~~~iv~~~~~~~--~~ 508 (558)
T PRK10669 438 AAGIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHL--DCARWLLLTIPNGY-EAGEIVASAREKR--PD 508 (558)
T ss_pred HCCCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcCChH-HHHHHHHHHHHHC--CC
Confidence 34567888888877554443 4577766643 33455554443 23787776442221 1223445555543 67
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
++||.... +.+......++|++..+
T Consensus 509 ~~iiar~~--~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 509 IEIIARAH--YDDEVAYITERGANQVV 533 (558)
T ss_pred CeEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 78887654 45566666789988666
No 187
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=60.39 E-value=32 Score=33.38 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=36.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|+|+|||-.......+.++|+..|+++..+.+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 58999999999999999999999999888875432 22 3899887
No 188
>CHL00101 trpG anthranilate synthase component 2
Probab=60.26 E-value=21 Score=34.40 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=46.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC--CCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl--~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|||||-...+-..|.+.|+..|+.+..+......+..+... .||.||+-= ..|..++ +...+.+. ....+||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiiisgGpg~~~~~~--~~~~i~~~-~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIIISPGPGHPRDSG--ISLDVISS-YAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEECCCCCChHHCc--chHHHHHH-hcCCCcEE
Confidence 89999999999999999999999887766443222223222 378877521 1121122 22233222 22468988
Q ss_pred EEe
Q 009734 112 MMS 114 (527)
Q Consensus 112 ilS 114 (527)
-+.
T Consensus 77 GIC 79 (190)
T CHL00101 77 GVC 79 (190)
T ss_pred EEc
Confidence 665
No 189
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=60.18 E-value=1.1e+02 Score=32.65 Aligned_cols=103 Identities=11% Similarity=0.214 Sum_probs=62.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCEEEEE-C-CHHHHHHHHHcCCCCceE-EEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYRVTAV-P-DGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~~a-~-dg~eALe~L~~~~~~pDL-VLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
++||.||.- ..-...+..+.+.. +++++.+ . +.+.|-+..+. +.+ +..|+ +.|-.. .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----~gi~~y~~~-----------eell~d---~ 63 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR----LGVPLYCEV-----------EELPDD---I 63 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----hCCCccCCH-----------HHHhcC---C
Confidence 479999997 54444444444434 6787664 3 44444444433 222 22221 222221 4
Q ss_pred CCeEEEEec----CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 107 NIPVIMMSS----QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 107 ~iPVIilSa----~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
++-+|.+.. ....+.+.+|+++|..=++-||+..+|...+++.+-+
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 666666622 3568899999999999999999998787777666543
No 190
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=60.13 E-value=1.2e+02 Score=30.02 Aligned_cols=107 Identities=13% Similarity=0.155 Sum_probs=62.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+......... ...-.|... -+..+..+++.. .|++|+-....+.-|+.+++.+. ..+
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~----ad~~i~ps~~~e~~~~~~~Ea~a-----~G~ 288 (359)
T cd03823 220 DIELVIVGNGLELEEESYEL--EGDPRVEFLGAYPQEEIDDFYAE----IDVLVVPSIWPENFPLVIREALA-----AGV 288 (359)
T ss_pred CcEEEEEcCchhhhHHHHhh--cCCCeEEEeCCCCHHHHHHHHHh----CCEEEEcCcccCCCChHHHHHHH-----CCC
Confidence 45666666544433222111 112233332 234566666653 57777643333445667777774 257
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||.. .... ..+.+..|..+++.+|-+.++|...+..++.
T Consensus 289 Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 289 PVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 88853 3222 3345566778999999999999999998875
No 191
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=60.13 E-value=68 Score=30.97 Aligned_cols=86 Identities=14% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcccCCCC-eEEEEecC
Q 009734 48 TALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEICKNI-PVIMMSSQ 116 (527)
Q Consensus 48 ~~lL~~~Gy~V~~-a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~~~~i-PVIilSa~ 116 (527)
.+.++..|+.+.. + .+..+.++.+.. .+|.|+++-..|+..| ++.+++++.......+ ++|++.+-
T Consensus 102 ~~~~~~~~~~~g~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG 178 (220)
T PRK05581 102 LQLIKSAGIKAGLVLNPATPLEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGG 178 (220)
T ss_pred HHHHHHcCCEEEEEECCCCCHHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 3444455665433 2 234555554432 2677777665565543 3445555432111122 45556565
Q ss_pred CCHHHHHHHHHcCCCEEEeC
Q 009734 117 DSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K 136 (527)
-..+.+.++.+.|++.+++-
T Consensus 179 I~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 179 INADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 56688888999999977543
No 192
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=59.86 E-value=1.1e+02 Score=34.41 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=26.0
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.++|||.=.+......+.+|+.+||+..+.=
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3689887778788999999999999988754
No 193
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=59.66 E-value=1.8e+02 Score=30.70 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=66.3
Q ss_pred cCEEEEEecCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVEADD--------STRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVDDD~--------~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..+++||.+.+ .....+..+....+-.|.... +..+..+++.. .|++++-....+.=|+-+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH
Confidence 46777776532 233345555555555554432 45666666653 58888644333333566666653
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE-EeCCCCHHHHHHHHHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY-LVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy-L~KP~~~eeL~~~L~~v~r 152 (527)
..+|||... .... .+.+..|..+| +..|.+.++|...|.+++.
T Consensus 300 -----~G~PVI~s~-~gg~---~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 -----AGKPVLAST-KGGI---TEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred -----cCCCEEEeC-CCCc---HhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 367888643 3322 24455688888 5689999999999988874
No 194
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=59.65 E-value=33 Score=32.85 Aligned_cols=70 Identities=17% Similarity=0.069 Sum_probs=47.3
Q ss_pred EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 59 TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 59 ~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+.+.+.+++.+.++.. +|+|.+|=.-| -+--++++.|+... +. ..|.+|+--..+.+.+....|++.+-+
T Consensus 85 VEv~~~ee~~ea~~~g---~d~I~lD~~~~-~~~~~~v~~l~~~~--~~-v~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 85 VEVENLEEAEEALEAG---ADIIMLDNMSP-EDLKEAVEELRELN--PR-VKIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEESSHHHHHHHHHTT----SEEEEES-CH-HHHHHHHHHHHHHT--TT-SEEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEcCCHHHHHHHHHhC---CCEEEecCcCH-HHHHHHHHHHhhcC--Cc-EEEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 4588999999999853 89999995434 33334445454443 33 677788888888888899999876643
No 195
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=59.57 E-value=1.2e+02 Score=31.47 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=41.7
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHcCCCCceEEEE
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTA-----VPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-----a~dg~eALe~L~~~~~~pDLVLl 83 (527)
.|+-+||=+|.|+...+..-.+-++.|..+.. -.-+.....+|+... |||+++
T Consensus 102 ~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~--PDIlVi 159 (283)
T TIGR02855 102 GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVR--PDILVI 159 (283)
T ss_pred CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhC--CCEEEE
Confidence 44679999999999998888888888776543 346667778888765 998887
No 196
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.51 E-value=40 Score=33.29 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=67.5
Q ss_pred CccccChhhhhhhccCccccchHHhhhc--CcCEEEE-EecCHHHHHHHHHHHHh-CCCEEEE------ECCHHHHHHHH
Q 009734 2 GDVVLNDEELKEMNGNEGIAKWETFLQR--MALRVLL-VEADDSTRQIVTALLRK-SSYRVTA------VPDGLKAWEVL 71 (527)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~lrVLL-VDDD~~~r~~L~~lL~~-~Gy~V~~------a~dg~eALe~L 71 (527)
|.++|+.+|++.|...- ..+... -.+-+=+ =+|.......++.+++. .|+.++. +.+..+||+.|
T Consensus 62 gdF~Ys~~E~~~M~~dI-----~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L 136 (201)
T PF03932_consen 62 GDFVYSDEEIEIMKEDI-----RMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQL 136 (201)
T ss_dssp S-S---HHHHHHHHHHH-----HHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHH-----HHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHH
Confidence 67889999999987220 000000 0111112 23445556667777664 3677664 46899999999
Q ss_pred HcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCCEEE
Q 009734 72 KGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYL 134 (527)
Q Consensus 72 ~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL 134 (527)
.... ++-||+.=.-+ -.+|++.|++|.+... ..+- ||..+--..+.+....+ .|+..|-
T Consensus 137 ~~lG--~~rVLTSGg~~~a~~g~~~L~~lv~~a~-~~i~-Im~GgGv~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 137 IELG--FDRVLTSGGAPTALEGIENLKELVEQAK-GRIE-IMPGGGVRAENVPELVEETGVREIH 197 (201)
T ss_dssp HHHT---SEEEESTTSSSTTTCHHHHHHHHHHHT-TSSE-EEEESS--TTTHHHHHHHHT-SEEE
T ss_pred HhcC--CCEEECCCCCCCHHHHHHHHHHHHHHcC-CCcE-EEecCCCCHHHHHHHHHhhCCeEEe
Confidence 7765 99999976554 5799999999976542 2333 33443333334444443 6776653
No 197
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=59.34 E-value=1.4e+02 Score=29.81 Aligned_cols=67 Identities=27% Similarity=0.308 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~m-DG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
..+.++.+.... -.++++|+..-++ .| +++++.+.+. ..+|||+-.+-.+.+.+.+++.+|++..++
T Consensus 148 ~~~~~~~~~~~~--~~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKWP--EELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHhC--CeEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 566666665431 3599999976543 23 6778888654 478999988899999999999999998875
No 198
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=59.05 E-value=96 Score=31.73 Aligned_cols=99 Identities=21% Similarity=0.174 Sum_probs=61.4
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC-CC--CCCCHHHHHHHHHhcccCC
Q 009734 33 RVLLVEA--DDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV-DL--PSISGFALLTLVMEHEICK 106 (527)
Q Consensus 33 rVLLVDD--D~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl-~M--P~mDGlelL~~Lr~~~~~~ 106 (527)
-|||+-. ++.....|...-..+|+++. .+.+..|+-..+... .++|=++- ++ ...| ++...+|... ...
T Consensus 134 aVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~---a~iiGINnRdL~tf~vd-~~~~~~l~~~-ip~ 208 (254)
T PF00218_consen 134 AVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAG---ADIIGINNRDLKTFEVD-LNRTEELAPL-IPK 208 (254)
T ss_dssp EEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEESBCTTTCCBH-THHHHHHHCH-SHT
T ss_pred EeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcC---CCEEEEeCccccCcccC-hHHHHHHHhh-Ccc
Confidence 4555544 23333455555667899854 599999988887643 67776643 22 3333 3444444332 114
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++.+|.-|+-.+.+.+.+....|++.+|+-
T Consensus 209 ~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 209 DVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp TSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred ceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 567777788889999999999999999975
No 199
>PRK07206 hypothetical protein; Provisional
Probab=58.86 E-value=1.4e+02 Score=31.81 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=18.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA 60 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~ 60 (527)
|+.+||||+-...- ..+.+.+++.||+++.
T Consensus 1 ~~k~~liv~~~~~~-~~~~~a~~~~G~~~v~ 30 (416)
T PRK07206 1 MMKKVVIVDPFSSG-KFLAPAFKKRGIEPIA 30 (416)
T ss_pred CCCeEEEEcCCchH-HHHHHHHHHcCCeEEE
Confidence 45677777775443 3455566667776543
No 200
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.82 E-value=38 Score=34.43 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d------~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
+.+++++.||+.. .++|+++|+-+.. ...+.++.++|++.+|.-....++....+..+
T Consensus 73 ~~~~~v~~ir~~~--~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKH--PNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 4577788887542 4789888887654 67788999999999999988888877666555
No 201
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=58.72 E-value=1.6e+02 Score=33.19 Aligned_cols=100 Identities=11% Similarity=0.211 Sum_probs=64.7
Q ss_pred cCEEEEEecCH----HHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeC--------------CCCC
Q 009734 31 ALRVLLVEADD----STRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEV--------------DLPS 89 (527)
Q Consensus 31 ~lrVLLVDDD~----~~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl--------------~MP~ 89 (527)
...|++||--. .+.+.++.+=+.. +..|.. +.+.++|..+++.. .|.|.+-+ ..|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG---aD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG---VDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC---cCEEEECCCCCccccCccccccCCCc
Confidence 45677777422 1222333333333 344543 67888888887643 78886632 2244
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 90 mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..-+..+.++.+. ..+|||.-.+-.....+.+|+.+||+..++=
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 4456666666543 3689999999999999999999999988754
No 202
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=58.66 E-value=1e+02 Score=30.93 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCCceEEEE-eCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILT-EVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLl-Dl~----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~G-A~DyL~ 135 (527)
.+..+.+.+.. +|.|++ |+. +++.+ +++++++++. .++|||...+..+.+.+.+++..| ++..+.
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~~-~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGYD-LELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCCC-HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 44445555444 675444 432 22222 6888888765 378999999999999999999988 887543
No 203
>PRK13566 anthranilate synthase; Provisional
Probab=58.66 E-value=32 Score=40.34 Aligned_cols=78 Identities=28% Similarity=0.393 Sum_probs=50.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe--CCCCC-CCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE--VDLPS-ISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD--l~MP~-mDGlelL~~Lr~~~~~~ 106 (527)
..++|||||....+...|..+|++.|++|..+..... .+.+... .||.||+- -..|. .+-.++++.+.+ .
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~~----~ 597 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAALA----R 597 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHHH----C
Confidence 4589999999999999999999999999887654322 1222222 38988762 11121 123455555433 3
Q ss_pred CCeEEEEe
Q 009734 107 NIPVIMMS 114 (527)
Q Consensus 107 ~iPVIilS 114 (527)
++||+-+.
T Consensus 598 ~iPILGIC 605 (720)
T PRK13566 598 NLPIFGVC 605 (720)
T ss_pred CCcEEEEe
Confidence 68998665
No 204
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=58.35 E-value=1.4e+02 Score=30.42 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=49.2
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-++. .....+...|++.|++|+.. .+....+..++... +|+||+.. ...+...++++++
T Consensus 142 ~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~--~~~~~~~~~~~~~ 217 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAG--HFPDAVLLVRQMK 217 (345)
T ss_pred ceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHH
Confidence 4555554443 33455667778889887631 35555667776544 89999754 4457788889988
Q ss_pred hcccCCCCeEEEEec
Q 009734 101 EHEICKNIPVIMMSS 115 (527)
Q Consensus 101 ~~~~~~~iPVIilSa 115 (527)
+... ..++++.+.
T Consensus 218 ~~g~--~~~~~~~~~ 230 (345)
T cd06338 218 ELGY--NPKALYMTV 230 (345)
T ss_pred HcCC--CCCEEEEec
Confidence 7654 446665543
No 205
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.26 E-value=2.6e+02 Score=29.84 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=72.0
Q ss_pred CEEEEEecCHHHHHHHHHH------HHhCCCEE--EEECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHH
Q 009734 32 LRVLLVEADDSTRQIVTAL------LRKSSYRV--TAVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~l------L~~~Gy~V--~~a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~ 98 (527)
+|+=|+-|++...--+... |-+.||.| +++.|...|-++..- . + +.++-+-=| +..--+.++.
T Consensus 168 iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~-g--~-~avmPl~~pIGsg~gv~~p~~i~~ 243 (326)
T PRK11840 168 VKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDA-G--A-VAVMPLGAPIGSGLGIQNPYTIRL 243 (326)
T ss_pred EEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhc-C--C-EEEeeccccccCCCCCCCHHHHHH
Confidence 4555555544433322222 22448987 446677777666553 3 4 333322222 2334567777
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHH
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWR 152 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~r 152 (527)
+.+. +++|||+=.+-...+.+.++|++|++..|+ |--++-.+..+++.+..
T Consensus 244 ~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 244 IVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 7665 479999988999999999999999999864 55667777766666553
No 206
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=58.02 E-value=1e+02 Score=32.15 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=61.4
Q ss_pred EEEEEecCHHHHHHHHHHHH----hCCCEE---EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 33 RVLLVEADDSTRQIVTALLR----KSSYRV---TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~----~~Gy~V---~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
-|||=|.+-...-.++..++ ..+|.+ +.+++.+++.+.++.. +|+|++| +|+--.--+.++.+ . .
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLD-Nm~~e~~~~av~~l---~-~ 231 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLD-NMSPEELKEAVKLL---G-L 231 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEec-CCCHHHHHHHHHHh---c-c
Confidence 36666666665554666654 346632 3478999999999864 7999999 44432222233332 1 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
..-.++=.|+.-..+.+......|++-+-+
T Consensus 232 ~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 232 AGRALLEASGGITLENIREYAETGVDVISV 261 (280)
T ss_pred CCceEEEEeCCCCHHHHHHHhhcCCCEEEe
Confidence 234566678888999999988999876543
No 207
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.99 E-value=87 Score=34.24 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=68.0
Q ss_pred cCEEEEEec---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEA---DDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDD---D~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
..+++||-+ ++...+.++++.++.|. .|.... ..+..+++.. .|++++--.. +.-|+-+++.+.
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~----aDv~vlpS~~-Eg~p~~vlEAma----- 392 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPK----LDVLVLTSIS-EGQPLVILEAMA----- 392 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHh----CCEEEeCchh-hcCChHHHHHHH-----
Confidence 467777754 34556667777776665 344433 3444445542 6888875433 334677787773
Q ss_pred CCCeEEEEecCCCHHHHHHHHHc------CCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMR------GAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~------GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
..+|||. |...... +.+.- |..+++..|-+.++|...|.+++..
T Consensus 393 ~G~PVVa-td~g~~~---elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 393 AGIPVVA-TDVGSCR---ELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred cCCCEEE-CCCCChH---HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 3578886 4433333 33333 6789999999999999999988643
No 208
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=57.94 E-value=14 Score=35.40 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
+||||||..+..-..+..+|++.|+++..+.
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6999999988888889999999998776654
No 209
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=57.94 E-value=1.1e+02 Score=26.36 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEEE
Q 009734 40 DDSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 40 D~~~r~~L~~lL~~~Gy~V~~a 61 (527)
+......+...|...||.+...
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEEEc
Confidence 4444445555666678877654
No 210
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=57.85 E-value=31 Score=33.97 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=46.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe--CCCCCCCHH--HHHHHHHhcccCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE--VDLPSISGF--ALLTLVMEHEICKN 107 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD--l~MP~mDGl--elL~~Lr~~~~~~~ 107 (527)
|||||||..+.....+...|+..|+++..+......+..+......+|.||+- -..|.-++. .+++++.+ .+
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~----~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAA----AG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHh----CC
Confidence 58999999888888899999999998776543221111111101137877762 122433333 34444432 36
Q ss_pred CeEEEEe
Q 009734 108 IPVIMMS 114 (527)
Q Consensus 108 iPVIilS 114 (527)
+||+-+.
T Consensus 77 ~PiLGIC 83 (214)
T PRK07765 77 TPLLGVC 83 (214)
T ss_pred CCEEEEc
Confidence 8988665
No 211
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.83 E-value=65 Score=40.09 Aligned_cols=103 Identities=18% Similarity=0.240 Sum_probs=69.4
Q ss_pred CEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCC-CCCH-HHHHHHHHhc
Q 009734 32 LRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-SISG-FALLTLVMEH 102 (527)
Q Consensus 32 lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP-~mDG-lelL~~Lr~~ 102 (527)
-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++.. +|+|.+-.-|. .+.. .++++.|++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 578877 6777777788888999999998743 5677778777655 99999987775 3433 5778888776
Q ss_pred ccCCCCeEEEEecCCCHHH-HHHH--HHcCCCEEEeCCC
Q 009734 103 EICKNIPVIMMSSQDSVST-VYKC--MMRGAADYLVKPV 138 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~-~~~a--l~~GA~DyL~KP~ 138 (527)
. .++||++=-+..+... ..+. --.|++.|-.-.+
T Consensus 830 g--~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~ 866 (1229)
T PRK09490 830 G--FTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDAS 866 (1229)
T ss_pred C--CCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHH
Confidence 4 5788887555444332 1111 1128877764433
No 212
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=57.60 E-value=1e+02 Score=32.05 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=61.1
Q ss_pred CEEEEEe--cCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------HHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 32 LRVLLVE--ADDST---RQIVTALLRKSSYRVTAVPDGLKAWEV-------LKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 32 lrVLLVD--DD~~~---r~~L~~lL~~~Gy~V~~a~dg~eALe~-------L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
.+|+||- +.+.. ...+..+|+..|+++.........+.. .+.....+|+||+ -|.||. +++.+
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~ 80 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIG 80 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHH
Confidence 3588873 33333 345556667788887664432221110 0111123788887 377873 45555
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+... ..++||+-+. .|-.+||. .+..+++...|.++++..
T Consensus 81 ~~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 81 RQLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HHhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 5432 2478988554 46667888 788899999999887543
No 213
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=57.42 E-value=78 Score=39.27 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=71.0
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCC-CCCH-HHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-SISG-FALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP-~mDG-lelL~~Lr~ 101 (527)
.-+|||. |-+..=..++.-+|+..||+|+... ..++.++.+++.. +|+|-+-.-|. .+.. .++++.|++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3577777 6677777777888999999998743 5677778887655 99999987765 3443 577888877
Q ss_pred cccCCCCeEEEEecCCCHHHHHH---HHHcCCCEEEeCCCC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYK---CMMRGAADYLVKPVR 139 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~---al~~GA~DyL~KP~~ 139 (527)
.. ..+||++=-+.-+...+.. ....||+.|-.-.+.
T Consensus 810 ~g--~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~ 848 (1178)
T TIGR02082 810 RG--ITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASR 848 (1178)
T ss_pred cC--CCceEEEeccccchhHHHhhhhhhccCCeEEecCHHH
Confidence 64 4688876555444444432 123388777654433
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=57.41 E-value=1.5e+02 Score=30.46 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=34.8
Q ss_pred hhcCcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEeC
Q 009734 27 LQRMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~---dg~----eALe~L~~~~~~pDLVLlDl 85 (527)
+.+...+|+||+-|.. ..+.++.+.+..|..+.... +.. ++++.+... .+|+||+|.
T Consensus 96 l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT 162 (272)
T TIGR00064 96 LKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDT 162 (272)
T ss_pred HHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 3345579999997752 23456666677776665432 222 333333333 399999997
No 215
>PRK05637 anthranilate synthase component II; Provisional
Probab=56.62 E-value=21 Score=35.21 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=47.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE--eCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl--Dl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
-||||||-...+...|...|+..|+.+..+..... ++.+... .||.||+ --.-|...+ ...+.++.. ...+|
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIlsgGPg~~~d~~-~~~~li~~~--~~~~P 75 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICLSPGPGHPRDAG-NMMALIDRT--LGQIP 75 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEEeCCCCCHHHhh-HHHHHHHHH--hCCCC
Confidence 58999999999999999999999998777654322 2333222 3788877 222222122 223333221 13678
Q ss_pred EEEEe
Q 009734 110 VIMMS 114 (527)
Q Consensus 110 VIilS 114 (527)
|+-+.
T Consensus 76 iLGIC 80 (208)
T PRK05637 76 LLGIC 80 (208)
T ss_pred EEEEc
Confidence 88665
No 216
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=56.43 E-value=99 Score=30.27 Aligned_cols=101 Identities=22% Similarity=0.344 Sum_probs=56.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC--CC-------------EEEEECCHHHHHHHHHcC-CCCceEEEEeCC-CCCCCHHH
Q 009734 32 LRVLLVEADDSTRQIVTALLRKS--SY-------------RVTAVPDGLKAWEVLKGR-PRNIDLILTEVD-LPSISGFA 94 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~--Gy-------------~V~~a~dg~eALe~L~~~-~~~pDLVLlDl~-MP~mDGle 94 (527)
.+..||..-+.+++++.++|..+ |+ .|..+.+.++|++.+++. ...|-+|.++.. -|+.=.++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~ 122 (185)
T PF09936_consen 43 KGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA 122 (185)
T ss_dssp SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH
T ss_pred cCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH
Confidence 57899999999999999999642 32 367789999999988742 234999999998 56666676
Q ss_pred HHHHHHhcccCCCCeEEEE--ecCCCHHHHHHHHHcCCCEEEeCCCCH
Q 009734 95 LLTLVMEHEICKNIPVIMM--SSQDSVSTVYKCMMRGAADYLVKPVRR 140 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIil--Sa~~d~~~~~~al~~GA~DyL~KP~~~ 140 (527)
-++++.... +-|++++ |+.+-.+.+ +...||+..|+.-
T Consensus 123 ~lr~~l~~~---~~P~LllFGTGwGL~~ev-----~~~~D~iLePI~g 162 (185)
T PF09936_consen 123 ELRRMLEEE---DRPVLLLFGTGWGLAPEV-----MEQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHHH-----S-EEEEE--TT---HHH-----HTT-SEEB--TTT
T ss_pred HHHHHHhcc---CCeEEEEecCCCCCCHHH-----HHhcCeeEccccc
Confidence 666654222 3466655 555433332 2456899999963
No 217
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.25 E-value=1.1e+02 Score=30.48 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=39.7
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcccCCCC--eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009734 81 ILTEVDLPSISGFALLTLVMEHEICKNI--PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146 (527)
Q Consensus 81 VLlDl~MP~mDGlelL~~Lr~~~~~~~i--PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~ 146 (527)
=++++.|-.-+.++.++.|++.. ++- -+|=.-.--+.+.+.++.++|| +||+-|....++...
T Consensus 40 ~~iEit~~~~~a~~~i~~l~~~~--~~~p~~~vGaGTV~~~~~~~~a~~aGA-~FivsP~~~~~v~~~ 104 (213)
T PRK06552 40 KAIEVTYTNPFASEVIKELVELY--KDDPEVLIGAGTVLDAVTARLAILAGA-QFIVSPSFNRETAKI 104 (213)
T ss_pred CEEEEECCCccHHHHHHHHHHHc--CCCCCeEEeeeeCCCHHHHHHHHHcCC-CEEECCCCCHHHHHH
Confidence 34444444555777788887642 211 2333344557889999999998 567777777776644
No 218
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=56.02 E-value=3.1 Score=40.76 Aligned_cols=112 Identities=23% Similarity=0.281 Sum_probs=72.2
Q ss_pred EEEecCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 35 LLVEADDSTRQIVTALLRKSSY----RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 35 LLVDDD~~~r~~L~~lL~~~Gy----~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+.+|++...+..+..++...-+ ....+....+....... ..+|+++.++.||++.++.++.++.......++|+
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 6777776666666666654321 12222222111111111 34899999999999999999998876444566777
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
+++............+..++.+|+.||....++.....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 134 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQ 134 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCc
Confidence 77776666666777888889999999998444443333
No 219
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=56.01 E-value=1.2e+02 Score=33.73 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=47.0
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mD-GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
+..+-++.|-... .|+|++|...+.-. -++++++|+.. ++++|||+ -.-.+.+.+..++++||+..-
T Consensus 225 ~~~~ra~~Lv~aG--Vd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 225 DVGGKAKALLDAG--VDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred cHHHHHHHHHHhC--CCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 4444445454443 89999999885433 36778888764 36888886 335688899999999997654
No 220
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=55.98 E-value=37 Score=34.20 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=46.2
Q ss_pred CEEEEEecCH------HHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 32 LRVLLVEADD------STRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 32 lrVLLVDDD~------~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
||||++-... .....+...|.+.|++|..+. +.....+.+... .||+|.+-......-.+.++..+.
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~---- 74 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL---- 74 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH----
Confidence 4788886553 466677788888899877643 443444555443 499999865444444444454442
Q ss_pred CCCCeEEEE
Q 009734 105 CKNIPVIMM 113 (527)
Q Consensus 105 ~~~iPVIil 113 (527)
..+|+|+.
T Consensus 75 -~~~~~v~~ 82 (365)
T cd03825 75 -DRKPVVWT 82 (365)
T ss_pred -cCCCEEEE
Confidence 25677753
No 221
>PRK14098 glycogen synthase; Provisional
Probab=55.53 E-value=1.6e+02 Score=32.67 Aligned_cols=112 Identities=7% Similarity=0.068 Sum_probs=66.1
Q ss_pred cCEEEEEecC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEAD-DSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD-~~~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++|+-+- ......++.+.+..+-.|.. .-+..++.+++.. .|+.|+=- ...--|+..++.++. .
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E~~Gl~~lEAma~-----G 405 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIESCGMLQMFAMSY-----G 405 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCCCchHHHHHHHhC-----C
Confidence 5788888763 33556677776655433433 3344445555543 58888532 234457777776642 3
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|+|+...-.-.+.+......+..+|+..|.+.++|..+|.+++.
T Consensus 406 ~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 406 TIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred CCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 455543322222333222223678999999999999999988653
No 222
>PRK10060 RNase II stability modulator; Provisional
Probab=55.14 E-value=1.2e+02 Score=34.94 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~M----P-~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
....+-..|+..|+.+.. +..|...+..|..-+ +|.|=+|-.+ . ......+++.|-.....-++.|| ..+
T Consensus 542 ~~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~vi-AeG 618 (663)
T PRK10060 542 LALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI-AEG 618 (663)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEE-Eec
Confidence 334455667888998766 678888888888765 9999999533 2 23455666666443322355665 467
Q ss_pred CCCHHHHHHHHHcCCC---E-EEeCCCCHHHHHHHHHH
Q 009734 116 QDSVSTVYKCMMRGAA---D-YLVKPVRRNELRNLWQH 149 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~---D-yL~KP~~~eeL~~~L~~ 149 (527)
..+.+....+..+|++ + |+.||...+++...++.
T Consensus 619 VEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 619 VETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 7788888888999985 3 37799999998876654
No 223
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=54.88 E-value=3.1e+02 Score=29.78 Aligned_cols=126 Identities=25% Similarity=0.222 Sum_probs=72.0
Q ss_pred chHHhhhcCcCEEEEEe-cCHHHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHcCCCCceEEEEeCCC----CCCCH
Q 009734 22 KWETFLQRMALRVLLVE-ADDSTRQIVTALLRKSSYRVTA----VPDGLKAWEVLKGRPRNIDLILTEVDL----PSISG 92 (527)
Q Consensus 22 ~~e~~~~~~~lrVLLVD-DD~~~r~~L~~lL~~~Gy~V~~----a~dg~eALe~L~~~~~~pDLVLlDl~M----P~mDG 92 (527)
+++.+..-..--|.+.. .+......+....++.|..+.. ..+..+.++.+.... .|.|.+.... ....+
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~G--aD~I~~~pg~~~~~~~~~~ 150 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELG--VDYINVHVGIDQQMLGKDP 150 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcC--CCEEEEEeccchhhcCCCh
Confidence 55555444333333322 2222223344455567776554 223333333333333 7888765321 22567
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE-----EeCCCCHHHHHHHHHHHHHh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY-----LVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy-----L~KP~~~eeL~~~L~~v~rr 153 (527)
++.+++++.. .++||++..+- ..+.+.+++..||+.+ |.+.-++.+....++..+++
T Consensus 151 ~~~l~~l~~~---~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 151 LELLKEVSEE---VSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHHhh---CCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 8888888764 25899887765 5788889999999976 44555666666666665544
No 224
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=54.85 E-value=1.3e+02 Score=29.37 Aligned_cols=86 Identities=14% Similarity=0.085 Sum_probs=52.9
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
+.+...+|..||-++...+.++.-++..|.. +.. ..|..+.+... ...||+||+|---...-.-++++.|.....
T Consensus 72 lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~---~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~ 148 (199)
T PRK10909 72 LSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP---GTPHNVVFVDPPFRKGLLEETINLLEDNGW 148 (199)
T ss_pred HHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc---CCCceEEEECCCCCCChHHHHHHHHHHCCC
Confidence 3344569999999999999999999887753 333 34555544321 124999999854212223456677765432
Q ss_pred CCCCeEEEEec
Q 009734 105 CKNIPVIMMSS 115 (527)
Q Consensus 105 ~~~iPVIilSa 115 (527)
...-.||++.-
T Consensus 149 l~~~~iv~ve~ 159 (199)
T PRK10909 149 LADEALIYVES 159 (199)
T ss_pred cCCCcEEEEEe
Confidence 22334665553
No 225
>PRK10818 cell division inhibitor MinD; Provisional
Probab=54.82 E-value=24 Score=35.34 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=24.1
Q ss_pred CCccccChhhhhhhccCccccchHHhhhcCcCEEEEEecCH
Q 009734 1 MGDVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVEADD 41 (527)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~lrVLLVDDD~ 41 (527)
|+.||.-.-..+++-++--.+.+-..+.+...+|||||-|+
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 55555433334444433334444445556678999999887
No 226
>PRK00811 spermidine synthase; Provisional
Probab=54.75 E-value=1.1e+02 Score=31.31 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=45.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC------CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCC-----HHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS------SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTL 98 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~------Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-----GlelL~~ 98 (527)
..+|.+||=|+.+.+..++.|... .-+|. ...|+.+.+.. ....||+||+|+.-|..- .-++++.
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~ 176 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPVGPAEGLFTKEFYEN 176 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCCCchhhhhHHHHHHH
Confidence 468999999999999999988642 12343 35677665543 223599999998666322 2455555
Q ss_pred HHh
Q 009734 99 VME 101 (527)
Q Consensus 99 Lr~ 101 (527)
+++
T Consensus 177 ~~~ 179 (283)
T PRK00811 177 CKR 179 (283)
T ss_pred HHH
Confidence 554
No 227
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=54.43 E-value=1.1e+02 Score=31.14 Aligned_cols=107 Identities=9% Similarity=0.111 Sum_probs=66.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
...+++||.+.+... .+++.+ .....+...-+..+..+++.. .|++|+-.. ..-|+-+++.+. ..+|
T Consensus 220 ~~~~l~ivG~g~~~~-~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama-----~G~P 286 (351)
T cd03804 220 LGKRLVVIGDGPELD-RLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA-----SGTP 286 (351)
T ss_pred CCCcEEEEECChhHH-HHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH-----cCCC
Confidence 347788888776533 333311 122333334466667777754 577776544 334666676663 3579
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||....... .+.+..|..+++..|-+.++|...|..++..
T Consensus 287 vi~~~~~~~----~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 287 VIAYGKGGA----LETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred EEEeCCCCC----cceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 987543222 2334567789999999999999999888754
No 228
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.30 E-value=1e+02 Score=33.43 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=50.3
Q ss_pred CEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC-CCCCCHH--HHHHHHHhcccC
Q 009734 32 LRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-LPSISGF--ALLTLVMEHEIC 105 (527)
Q Consensus 32 lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~-MP~mDGl--elL~~Lr~~~~~ 105 (527)
.+|.+|.-|.. ..+.|+.+-+..|..+..+.++.+....+.... .+|+||+|.- +...|.. +.+..|.... .
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~-~ 245 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGAD-T 245 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccC-C
Confidence 57888887765 445666666777887777766555444444322 3799999973 3333332 3444442211 1
Q ss_pred CCCeEEEEecCCCHHH
Q 009734 106 KNIPVIMMSSQDSVST 121 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~ 121 (527)
+.-.++++++....+.
T Consensus 246 ~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 246 PVQRLLLLNATSHGDT 261 (374)
T ss_pred CCeEEEEecCccChHH
Confidence 2234777777654443
No 229
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=54.14 E-value=43 Score=31.97 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=55.3
Q ss_pred CEEEEEecC-HHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHH
Q 009734 32 LRVLLVEAD-DSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD-~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr 100 (527)
...++|-+. ..........++..|..+.. ..+..+.++.+... +|.|+++-.-|+..| ++.+++++
T Consensus 80 adgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~ 156 (210)
T TIGR01163 80 ADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVR 156 (210)
T ss_pred CCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHH
Confidence 344444433 22333344555666665333 23456666665432 577777655454433 34455554
Q ss_pred hccc--CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 101 EHEI--CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 101 ~~~~--~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+... .+.+||++..+- ..+.+.++++.||+.+++-
T Consensus 157 ~~~~~~~~~~~i~v~GGI-~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 157 KMIDENGLSILIEVDGGV-NDDNARELAEAGADILVAG 193 (210)
T ss_pred HHHHhcCCCceEEEECCc-CHHHHHHHHHcCCCEEEEC
Confidence 3211 123576655544 5788889899999988754
No 230
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=53.28 E-value=1.5e+02 Score=29.66 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=50.7
Q ss_pred HHHHHHHHcCCCCce-EEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-CCCEEEe---
Q 009734 65 LKAWEVLKGRPRNID-LILTEVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-GAADYLV--- 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pD-LVLlDl~----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~-GA~DyL~--- 135 (527)
.+..+.+.... ++ ++++++. +.+.| +++++++.+. .++|||.-.+..+.+.+.++++. |++..++
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~a 229 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGYD-LELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALAASI 229 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCcC-HHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence 44445554433 55 6675643 23333 7778888765 36899998888899999999975 9988876
Q ss_pred ---CCCCHHHHHHHH
Q 009734 136 ---KPVRRNELRNLW 147 (527)
Q Consensus 136 ---KP~~~eeL~~~L 147 (527)
.-++..+++..+
T Consensus 230 l~~~~~~~~~~~~~~ 244 (253)
T PRK02083 230 FHFGEITIGELKAYL 244 (253)
T ss_pred HHcCCCCHHHHHHHH
Confidence 345555554433
No 231
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=52.95 E-value=59 Score=30.93 Aligned_cols=85 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhccc--CCCCeEEEEec
Q 009734 48 TALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEI--CKNIPVIMMSS 115 (527)
Q Consensus 48 ~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~--~~~iPVIilSa 115 (527)
.+.++..|..+.. +. +..+.++.+... +|.|+++-..|+..| ++.++++++... .+++||++.-+
T Consensus 98 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG 174 (211)
T cd00429 98 IQLIKELGMKAGVALNPGTPVEVLEPYLDE---VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGG 174 (211)
T ss_pred HHHHHHCCCeEEEEecCCCCHHHHHHHHhh---CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 3334445554333 21 234444444322 688887766666444 445555544320 12478766555
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 009734 116 QDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (527)
-. .+.+.++.+.|++.+++-
T Consensus 175 I~-~env~~~~~~gad~iivg 194 (211)
T cd00429 175 IN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CC-HHHHHHHHHcCCCEEEEC
Confidence 44 588889999999998754
No 232
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.65 E-value=1.9e+02 Score=28.40 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe---
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV--- 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP---~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~--- 135 (527)
+..+..+.+.... ++ ++++|+..- ..-.+++++++.+. .++|||+..+-.+.+.+.+++..||+..++
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVVGSA 224 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHH
Confidence 4555555555433 45 555566321 12347888888765 368999988888889898999999998764
Q ss_pred ---CCCCHHHHH
Q 009734 136 ---KPVRRNELR 144 (527)
Q Consensus 136 ---KP~~~eeL~ 144 (527)
.|+...++.
T Consensus 225 ~~~~~~~~~~~~ 236 (241)
T PRK13585 225 LYKGKFTLEEAI 236 (241)
T ss_pred HhcCCcCHHHHH
Confidence 355555544
No 233
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=52.56 E-value=90 Score=30.88 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=45.8
Q ss_pred EEECCHHHHHHHHHcCC-CCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 009734 59 TAVPDGLKAWEVLKGRP-RNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 59 ~~a~dg~eALe~L~~~~-~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP 137 (527)
+...+.+++++.++.-. ..+.+|=+.+ -.-+.++.+++|++.. +++. |-.-.--+.+.+..+.++|| +||+-|
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~--~~~~-vGAGTVl~~~~a~~a~~aGA-~FivsP 87 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEV--PDAL-IGAGTVLNPEQLRQAVDAGA-QFIVSP 87 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHC--CCCE-EEEEeCCCHHHHHHHHHcCC-CEEECC
Confidence 33445555554433110 1144333333 3345777888887542 4422 33344457888999999998 566777
Q ss_pred CCHHHHHHH
Q 009734 138 VRRNELRNL 146 (527)
Q Consensus 138 ~~~eeL~~~ 146 (527)
....++...
T Consensus 88 ~~~~~v~~~ 96 (204)
T TIGR01182 88 GLTPELAKH 96 (204)
T ss_pred CCCHHHHHH
Confidence 766665543
No 234
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=52.53 E-value=1.8e+02 Score=31.95 Aligned_cols=104 Identities=10% Similarity=0.041 Sum_probs=56.3
Q ss_pred CcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC--CCceEEEEeCC--CCCCCHHHHHHHHHhc
Q 009734 30 MALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP--RNIDLILTEVD--LPSISGFALLTLVMEH 102 (527)
Q Consensus 30 ~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~--~~pDLVLlDl~--MP~mDGlelL~~Lr~~ 102 (527)
...+|.+|+-|+. ..+.++.+-+..|+.+..+.++.+..+.+.... ..+|+||+|.- +|. + -+++..|...
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~-d-~~~l~EL~~l 310 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYL-A-EESVSEISAY 310 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcc-C-HHHHHHHHHH
Confidence 3578999998864 244566666667776666677766554443211 23899999973 332 2 2333333321
Q ss_pred --ccCCCCeEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 009734 103 --EICKNIPVIMMSSQDSVSTVYKCM----MRGAADYLV 135 (527)
Q Consensus 103 --~~~~~iPVIilSa~~d~~~~~~al----~~GA~DyL~ 135 (527)
...++..++++++......+...+ ..+.+.+|.
T Consensus 311 ~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~ 349 (407)
T PRK12726 311 TDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349 (407)
T ss_pred hhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEE
Confidence 122344455556544433333332 355666653
No 235
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.45 E-value=2.2e+02 Score=28.87 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=62.8
Q ss_pred HHhhhc---CcCEEEEEecCH-HHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHcCCCCceEEEEeCCCCCC------
Q 009734 24 ETFLQR---MALRVLLVEADD-STRQIVTALLRKSSYRVT-AVP--DGLKAWEVLKGRPRNIDLILTEVDLPSI------ 90 (527)
Q Consensus 24 e~~~~~---~~lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~-~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~m------ 90 (527)
++|+.. ....-+|+-|.+ .....+...+++.|.... .+. +..+-++.+......+..++.=..-.|.
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~ 184 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAAS 184 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCCh
Confidence 455444 234545555544 445566667778887644 222 3344444443333235555541111121
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+-.+.++++|+. .++||++=-+-.+.+.+.++.+.||+.+++-
T Consensus 185 ~~~~~i~~lr~~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 185 ALNELVKRLKAY---SAKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred hHHHHHHHHHhh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 235667777664 3568775444456899999999999999976
No 236
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=52.35 E-value=2.9e+02 Score=28.60 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=67.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
.++++||-+-+. ++.+.++.+..+. .|... .+..+.+..+-.. .|++++=-.. ..=|+-+++.+.
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~---~d~~v~~s~~-Egf~~~~lEAma----- 279 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKN---VSALLLTSKF-EGFPMTLLEAMS----- 279 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhc---CcEEEECCcc-cCcChHHHHHHH-----
Confidence 467788876554 4556666665554 34443 2333333332111 4777653322 223677777774
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
..+|||..-..... .+.+..|..+++..|-+.++|...|..++...
T Consensus 280 ~G~Pvv~s~~~~g~---~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 280 YGIPCISSDCMSGP---RDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cCCCEEEeCCCCCh---HHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 35788853313333 24556788999999999999999999987654
No 237
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.20 E-value=53 Score=34.84 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~mD-GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+++.++++.. -.+|+|.+|...+... -.+++++|++. .+++|||+ -.-.+.+.+..+.++||+..+
T Consensus 99 ~~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 99 YDFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 35566666542 1259999999997644 46788888764 35667665 223478889999999998865
No 238
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=51.92 E-value=1.5e+02 Score=33.06 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.++++.+.+.. +|+|++|..... ..-+++++.|+... +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~--p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKY--PDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhC--CCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 44555554444 899999975443 34567788887642 5788886 556688999999999997764
No 239
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.40 E-value=94 Score=33.14 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=45.6
Q ss_pred CcCEEEEEecCHH-----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHH
Q 009734 30 MALRVLLVEADDS-----TRQIVTALLRKSSYRVTAV---------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95 (527)
Q Consensus 30 ~~lrVLLVDDD~~-----~r~~L~~lL~~~Gy~V~~a---------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlel 95 (527)
...|+|||-|... ....+...|+..|+++..+ .+..++++.+++.. +|+|| -+.|.+-+++
T Consensus 24 ~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Ii---avGGGS~iD~ 98 (380)
T cd08185 24 PGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVV---GLGGGSSMDT 98 (380)
T ss_pred cCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEE---EeCCccHHHH
Confidence 3469999998765 3356777888878766543 24556777777654 99998 3557777777
Q ss_pred HHHHH
Q 009734 96 LTLVM 100 (527)
Q Consensus 96 L~~Lr 100 (527)
.+.+.
T Consensus 99 aK~ia 103 (380)
T cd08185 99 AKAIA 103 (380)
T ss_pred HHHHH
Confidence 77664
No 240
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=51.37 E-value=2.4e+02 Score=28.38 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=47.2
Q ss_pred CEEEEEe-cCH---HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADD---STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~---~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|- |+. .....+++.+++.|..++.. .+....+..+.... ||+||+-.. +.+.+.+++.++
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~--~dav~~~~~--~~~a~~~i~~~~ 212 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAAR--PQAVIMVGA--YKAAAAFIRALR 212 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcC--CCEEEEEcC--cHHHHHHHHHHH
Confidence 4666663 332 33344556667777654331 35666666666543 888888542 235778888887
Q ss_pred hcccCCCCeEEEEecCC
Q 009734 101 EHEICKNIPVIMMSSQD 117 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~ 117 (527)
+... .+||+.++...
T Consensus 213 ~~G~--~~~~~~~~~~~ 227 (336)
T cd06326 213 KAGG--GAQFYNLSFVG 227 (336)
T ss_pred hcCC--CCcEEEEeccC
Confidence 7653 56777665444
No 241
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=51.31 E-value=2.7e+02 Score=27.92 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred CcCEEEEEecCHH---HHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 30 MALRVLLVEADDS---TRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 30 ~~lrVLLVDDD~~---~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
...+++||-+.+. ..+.+.+.++..+. .|.......+..+++.. .|++|+=..-++.-|..+++.+.
T Consensus 215 ~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a---- 286 (355)
T cd03819 215 PDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA---- 286 (355)
T ss_pred CCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh----
Confidence 3467888875533 33444555555554 35554444455566653 57777643334556777887773
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
..+|||+.. ... ..+.+..|..+++..|-+.++|...|..++
T Consensus 287 -~G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 287 -MGRPVIASD-HGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred -cCCCEEEcC-CCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 367888643 332 234556677899999999999999986544
No 242
>PRK07695 transcriptional regulator TenI; Provisional
Probab=51.29 E-value=1.7e+02 Score=28.09 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=47.9
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP~-------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
+.+.+++.+..+. . .|.|++.-..|. .-|++.++.+... .++|||.+.+- +.+.+..++..|++.+
T Consensus 102 ~~s~e~a~~a~~~-G--adyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 102 VHSLEEAIQAEKN-G--ADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCHHHHHHHHHc-C--CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5677777665443 3 799987653332 2367888888654 26899988777 7888999999999887
Q ss_pred E
Q 009734 134 L 134 (527)
Q Consensus 134 L 134 (527)
.
T Consensus 175 a 175 (201)
T PRK07695 175 A 175 (201)
T ss_pred E
Confidence 3
No 243
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=51.04 E-value=1.4e+02 Score=30.24 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=43.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC-----CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS-----YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G-----y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-----GlelL~~L 99 (527)
..+|.+||-++.+.+..+..|...+ -++.. ..|+.+.++.. ...||+||+|..-|... ..++++.+
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~---~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~ 172 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT---ENTFDVIIVDSTDPVGPAETLFTKEFYELL 172 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---CCCccEEEEeCCCCCCcccchhHHHHHHHH
Confidence 4689999999999998888875431 12322 45666655543 23599999998655322 23555665
Q ss_pred Hh
Q 009734 100 ME 101 (527)
Q Consensus 100 r~ 101 (527)
++
T Consensus 173 ~~ 174 (270)
T TIGR00417 173 KK 174 (270)
T ss_pred HH
Confidence 54
No 244
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=51.00 E-value=1.3e+02 Score=30.62 Aligned_cols=120 Identities=26% Similarity=0.376 Sum_probs=77.1
Q ss_pred CccccChhhhhhhc---------cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhC-CCEEE------EECCHH
Q 009734 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS-SYRVT------AVPDGL 65 (527)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~------~a~dg~ 65 (527)
|.+|++.+|+.-|. +.+++| += .+-.|-......++++++.. |..|+ .+.|..
T Consensus 63 GdFvY~~~E~~iM~~DI~~~~~lG~~GVV----------~G-~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~ 131 (241)
T COG3142 63 GDFVYSDDELEIMLEDIRLARELGVQGVV----------LG-ALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPL 131 (241)
T ss_pred CCcccChHHHHHHHHHHHHHHHcCCCcEE----------Ee-eecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHH
Confidence 78999999998887 333333 11 23345555566777777653 45444 357899
Q ss_pred HHHHHHHcCCCCceEEEEeC-CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHH-HHcCCCEEEeC
Q 009734 66 KAWEVLKGRPRNIDLILTEV-DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKC-MMRGAADYLVK 136 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl-~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~a-l~~GA~DyL~K 136 (527)
+|++.+-+.. +.=||+-= .-.-.+|++.+++|-+.. +.-++||.-+--..+.+... ...|+.+|-..
T Consensus 132 ~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~li~~a--~gri~Im~GaGV~~~N~~~l~~~tg~~e~H~s 200 (241)
T COG3142 132 EALEQLIELG--VERILTSGGKASALEGLDLLKRLIEQA--KGRIIIMAGAGVRAENIAELVLLTGVTEVHGS 200 (241)
T ss_pred HHHHHHHHCC--CcEEecCCCcCchhhhHHHHHHHHHHh--cCCEEEEeCCCCCHHHHHHHHHhcCchhhhhc
Confidence 9999998755 77777743 344578999999886654 34456655555555555554 56777666433
No 245
>PLN02335 anthranilate synthase
Probab=50.81 E-value=19 Score=35.73 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=46.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHcCCCCceEEEEeC-CC-CCCCHHHHHHHHHhcccCCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG-LKAWEVLKGRPRNIDLILTEV-DL-PSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg-~eALe~L~~~~~~pDLVLlDl-~M-P~mDGlelL~~Lr~~~~~~~i 108 (527)
.+|||||-...+...|...|+..|+.+..+... .. ++.+... .||.||+-= -| |...| ..++.++.. ...+
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~-~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~--~~~~ 92 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELT-VEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLEL--GPLV 92 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCC-HHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHh--CCCC
Confidence 589999987888889999999999987776532 22 2323322 377766632 12 32222 234444432 2468
Q ss_pred eEEEEe
Q 009734 109 PVIMMS 114 (527)
Q Consensus 109 PVIilS 114 (527)
||+-+.
T Consensus 93 PiLGIC 98 (222)
T PLN02335 93 PLFGVC 98 (222)
T ss_pred CEEEec
Confidence 888665
No 246
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.73 E-value=1.8e+02 Score=30.39 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=59.2
Q ss_pred CEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH-------------HHcCCCCceEEEEeCCCCCCCHH
Q 009734 32 LRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLKAWEV-------------LKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 32 lrVLLVD--DD~~~r---~~L~~lL~~~Gy~V~~a~dg~eALe~-------------L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
|+|.||- +.+... ..+..+|++.|+++.........+.. .......+|+||+ -|.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 3566662 333333 44555677788887765432222210 0111113677776 277883
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|+..+... ..++||+-+- .|-.+||.- +..+++...|.++++..
T Consensus 77 -~L~aa~~~~-~~~~PilGIN-------------~G~lGFLt~-~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 -FLRTATYVG-NSNIPILGIN-------------TGRLGFLAT-VSKEEIEETIDELLNGD 121 (292)
T ss_pred -HHHHHHHhc-CCCCCEEEEe-------------cCCCCcccc-cCHHHHHHHHHHHHcCC
Confidence 455554432 2478988654 355667754 77899999999887654
No 247
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.72 E-value=1.5e+02 Score=30.86 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred cCEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHHHHH-------HHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 31 ALRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLKAWE-------VLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 31 ~lrVLLVD--DD~~~r---~~L~~lL~~~Gy~V~~a~dg~eALe-------~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
+.+|+||- +.+... ..+..+|++.|+++.........+. ........+|+||+ =|.||. +|+.
T Consensus 5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~a 79 (292)
T PRK03378 5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGA 79 (292)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHH
Confidence 35688873 334433 4455667778888776543322221 00111123677776 277883 4455
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+... ..++||+-+- .|-.+||. .+..+++...|++++...
T Consensus 80 a~~~~-~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 80 ARVLA-RYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HHHhc-CCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 54332 1368888654 35567776 577899999999887543
No 248
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.62 E-value=1.6e+02 Score=30.59 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=59.8
Q ss_pred CEEEEEe--cCH---HHHHHHHHHHHhCCCEEEEECCHHHHHH-----H--HHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 32 LRVLLVE--ADD---STRQIVTALLRKSSYRVTAVPDGLKAWE-----V--LKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 32 lrVLLVD--DD~---~~r~~L~~lL~~~Gy~V~~a~dg~eALe-----~--L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
.+|+||- +.+ ...+.+..+|++.|+++.......+.+. . .......+|+||+ -|.||. +++.+
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~ 79 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAA 79 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHH
Confidence 3688873 233 3444566667788888776543221111 0 0101113788876 277873 34444
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+... ..++||+-+.. |-.+|| -.++.+++...|..+++..
T Consensus 80 ~~~~-~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 80 RALA-RHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HHhc-CCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcCC
Confidence 3322 25789886653 556677 4688999999999987543
No 249
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.52 E-value=1.5e+02 Score=30.78 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=59.0
Q ss_pred EEEEEecCHHHH--H--HHHHHH----HhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 33 RVLLVEADDSTR--Q--IVTALL----RKSSY--RV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 33 rVLLVDDD~~~r--~--~L~~lL----~~~Gy--~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
-|||=|.+-... - .+...+ +..++ .| +.+.+.+++.+.++.. +|+|++| +|+--+--+++..++
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~g---aDiImLD-n~s~e~l~~av~~~~- 235 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAG---VDTIMLD-NFSLDDLREGVELVD- 235 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcC---CCEEEEC-CCCHHHHHHHHHHhC-
Confidence 467766665532 1 233433 34453 33 5589999999998753 7999999 444333333444332
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
...+|-.|+--..+.+.+....|+|-.-
T Consensus 236 -----~~~~leaSGgI~~~ni~~yA~tGVD~Is 263 (281)
T PRK06543 236 -----GRAIVEASGNVNLNTVGAIASTGVDVIS 263 (281)
T ss_pred -----CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2246778888899999888889986543
No 250
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.43 E-value=1.9e+02 Score=32.01 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=55.7
Q ss_pred cCcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCC--CCceEEEEeCC--CCCCCHHHHHHHHHh
Q 009734 29 RMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRP--RNIDLILTEVD--LPSISGFALLTLVME 101 (527)
Q Consensus 29 ~~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~--~~pDLVLlDl~--MP~mDGlelL~~Lr~ 101 (527)
....+|++|+-|+. ..+.++.+-+..|+.+..+.+..+..+.+.... ..+|+||+|.- ++. + .+.+++|.+
T Consensus 267 ~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k-d-~~lm~EL~~ 344 (436)
T PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR-A-SETVEEMIE 344 (436)
T ss_pred HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCc-C-HHHHHHHHH
Confidence 34578999998864 344455555567888777776666555443211 13899999962 222 1 233333332
Q ss_pred c--ccCCCCeEEEEecCCCH---HHHHHHH-HcCCCEEEe
Q 009734 102 H--EICKNIPVIMMSSQDSV---STVYKCM-MRGAADYLV 135 (527)
Q Consensus 102 ~--~~~~~iPVIilSa~~d~---~~~~~al-~~GA~DyL~ 135 (527)
. ...++-.++++++.... ..+.+.+ ..+.+.+|.
T Consensus 345 ~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 345 TMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred HHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 1 11234345556654322 2233332 456666653
No 251
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=50.30 E-value=43 Score=34.75 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=58.4
Q ss_pred cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCC-----CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCC
Q 009734 16 GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSS-----YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (527)
Q Consensus 16 ~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~G-----y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~ 89 (527)
+.+|..-+|=......-+|.+||=|+.+.+..++.|.... -+|.. ..||.+-++... ..+|+||+|..-|.
T Consensus 85 gGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---~~fDvIi~D~tdp~ 161 (282)
T COG0421 85 GGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---EKFDVIIVDSTDPV 161 (282)
T ss_pred CCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC---CcCCEEEEcCCCCC
Confidence 3445666666666667899999999999999999996542 23433 567766665443 34999999998882
Q ss_pred -----CCHHHHHHHHHhc
Q 009734 90 -----ISGFALLTLVMEH 102 (527)
Q Consensus 90 -----mDGlelL~~Lr~~ 102 (527)
+--.++.+.+++.
T Consensus 162 gp~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 162 GPAEALFTEEFYEGCRRA 179 (282)
T ss_pred CcccccCCHHHHHHHHHh
Confidence 1234677776543
No 252
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.27 E-value=2e+02 Score=31.49 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=62.4
Q ss_pred CcCEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCC---------C--CC
Q 009734 30 MALRVLLVEA----DDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLP---------S--IS 91 (527)
Q Consensus 30 ~~lrVLLVDD----D~~~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP---------~--mD 91 (527)
-...|++||- .....+.++.+=+.. +..+.. +.+.++|..+++.. .|.|.+-+.-- + ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG---aD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG---ADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC---CCEEEECCCCCcCCcceeecCCCCC
Confidence 3467888874 223333333332232 333433 77899998888753 78887543110 0 01
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
-+..+..+.+......+|||+=.+......+.+|+.+||+..++=
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 233333333321123689998888889999999999999888754
No 253
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=49.89 E-value=62 Score=31.70 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=36.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
+|+|.|||----....+...|++.|+ ++..+.+..++ . .+|.||+
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l----~----~~d~lIl 47 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV----A----AADRVVL 47 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh----c----CCCEEEE
Confidence 36999999888788899999999998 77778777653 2 2899887
No 254
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=49.52 E-value=1.5e+02 Score=31.48 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=46.2
Q ss_pred CEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHH
Q 009734 32 LRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 32 lrVLLVDDD~~~r-----~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~ 97 (527)
.|+|||-|..... +.+...|+..|+++..+. ...++++.+++.. +|+|| -+.|.+-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWII---ALGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCCccHHHHHH
Confidence 6899998876554 678888888888766543 3556777777654 89888 466777777777
Q ss_pred HHH
Q 009734 98 LVM 100 (527)
Q Consensus 98 ~Lr 100 (527)
.+.
T Consensus 99 ~ia 101 (375)
T cd08179 99 AMW 101 (375)
T ss_pred HHH
Confidence 764
No 255
>PRK05670 anthranilate synthase component II; Provisional
Probab=49.48 E-value=23 Score=33.85 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=33.9
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|||||-...+-..+.++|++.|+++..+.........+... .||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL--NPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC--CCCEEEE
Confidence 89999999999999999999999877754322112222222 2787776
No 256
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=49.26 E-value=1.3e+02 Score=29.66 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=38.8
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 82 LlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
++.+.|-.-++++.++.|++.. +.--+|-.-..-+.+.+..++.+|| +|++-|....++....
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp~~~~~v~~~~ 100 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLADAGG-RLIVTPNTDPEVIRRA 100 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHHcCC-CEEECCCCCHHHHHHH
Confidence 4444555556777888887542 2212333333456788899999999 5666676666665443
No 257
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.24 E-value=99 Score=30.95 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCCC-CH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPSI-SG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~m-DG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.++.+.... --.+|++|+..-++ .| +++++++.+. .++|||+-.+..+.+.+.+++++|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555554432 13699999976553 33 6778888764 378999988889999999999999999885
No 258
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=49.23 E-value=54 Score=32.87 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHc-CCCCceEEEEeCCCCC-CCHHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPS-ISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~-~~~~pDLVLlDl~MP~-mDGlelL~~L 99 (527)
.-+|.-||-++...+..++.|++.|+. |..... -+|++.+.. ....||+||+|..=+. ..=++.+..+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~l 155 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKADYPEYLERALPL 155 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHH
Confidence 358999999999999999999999873 444331 344444443 2245999999974432 2334444443
No 259
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=49.14 E-value=1.6e+02 Score=29.10 Aligned_cols=84 Identities=17% Similarity=0.156 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC------CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 46 IVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV------DLPSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl------~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
.+-..++..+.-+. .+.+.++++...+.. +|+|=+=+ ......-|+|+++|.+. .+|||.=-...+
T Consensus 83 ~li~~i~~~~~l~MADist~ee~~~A~~~G---~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~t 155 (192)
T PF04131_consen 83 ELIREIKEKYQLVMADISTLEEAINAAELG---FDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHT 155 (192)
T ss_dssp HHHHHHHHCTSEEEEE-SSHHHHHHHHHTT----SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--S
T ss_pred HHHHHHHHhCcEEeeecCCHHHHHHHHHcC---CCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCC
Confidence 33344444442222 368999999888743 89987643 11223458999999763 689888777889
Q ss_pred HHHHHHHHHcCCCEEEeC
Q 009734 119 VSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 119 ~~~~~~al~~GA~DyL~K 136 (527)
++.+.+++++||+..++-
T Consensus 156 pe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 156 PEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHHHHHHHTT-SEEEE-
T ss_pred HHHHHHHHhcCCeEEEEC
Confidence 999999999999988754
No 260
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.01 E-value=2.6e+02 Score=27.11 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=65.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.++++|+.+. .....+..+++..+. .|. ..-+..+..+.+.. .|++|+-... +.-|..+++.+. .
T Consensus 230 ~~~l~i~G~~-~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~-----~ 298 (374)
T cd03801 230 DVRLVIVGDG-PLREELEALAAELGLGDRVTFLGFVPDEDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA-----A 298 (374)
T ss_pred CeEEEEEeCc-HHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHh----cCEEEecchh-ccccchHHHHHH-----c
Confidence 3667777644 344455555433332 233 33345777777754 5787764433 344566777663 2
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+|||+... ... .+.+..+-.+++..+.+.++|...|..++..
T Consensus 299 g~pvI~~~~-~~~---~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 341 (374)
T cd03801 299 GLPVVASDV-GGI---PEVVEDGETGLLVPPGDPEALAEAILRLLDD 341 (374)
T ss_pred CCcEEEeCC-CCh---hHHhcCCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 568876443 222 2334457788999999999999999887643
No 261
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.94 E-value=3.2e+02 Score=28.28 Aligned_cols=99 Identities=9% Similarity=0.179 Sum_probs=59.4
Q ss_pred hcCcC--EEEEEecCHHHHHHHHHHH----HhCCC--E-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 28 QRMAL--RVLLVEADDSTRQIVTALL----RKSSY--R-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 28 ~~~~l--rVLLVDDD~~~r~~L~~lL----~~~Gy--~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
+|+.+ -|||=|.+-.....+...+ +..++ . .+.+.+.++|++.++.. +|+|.+| +| + ++.+++
T Consensus 147 HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~G---aDiI~LD-n~---~-~e~l~~ 218 (273)
T PRK05848 147 HRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAG---ADIVMCD-NM---S-VEEIKE 218 (273)
T ss_pred ccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEEC-CC---C-HHHHHH
Confidence 34444 3555554444443444444 33443 2 34588999999999753 7999998 33 2 333333
Q ss_pred HHhc--ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 99 VMEH--EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 99 Lr~~--~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+... ...+++ +|..++.-+.+.+.+....|++-+.+
T Consensus 219 ~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 219 VVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred HHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 3222 111333 56667777999999999999987654
No 262
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=48.58 E-value=33 Score=34.70 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=47.7
Q ss_pred ccccchHHhhhcCc----CEEEEEecCHHHHHH----------HHHHHHhCCCEEEEEC--CHHHHHHHHHcC---CCCc
Q 009734 18 EGIAKWETFLQRMA----LRVLLVEADDSTRQI----------VTALLRKSSYRVTAVP--DGLKAWEVLKGR---PRNI 78 (527)
Q Consensus 18 ~~~~~~e~~~~~~~----lrVLLVDDD~~~r~~----------L~~lL~~~Gy~V~~a~--dg~eALe~L~~~---~~~p 78 (527)
++.-.||-+|.-.- --|.|||.+..+... |...++..|++|+.+. +..+..+.+... ...|
T Consensus 154 ~EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP 233 (243)
T COG3959 154 DEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRP 233 (243)
T ss_pred ccccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCC
Confidence 45678999976532 348899988766543 7777888999998875 455544444322 2368
Q ss_pred eEEEEeCCC
Q 009734 79 DLILTEVDL 87 (527)
Q Consensus 79 DLVLlDl~M 87 (527)
-+||++..+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999988643
No 263
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.51 E-value=2.9e+02 Score=27.45 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=57.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHcCCCCceEEEE-eCCC-----------------
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILT-EVDL----------------- 87 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a----~dg~eALe~L~~~~~~pDLVLl-Dl~M----------------- 87 (527)
.++-.+|-.++......+.+.|...|+++..+ ..+.++++.+++.- |+++|- +..+
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~~~~a~~a~~aGA~Fiv 92 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLNPEQLAQAIEAGAQFIV 92 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccCHHHHHHHHHcCCCEEE
Confidence 33444556667777777777777778865553 46777777776543 565443 3322
Q ss_pred -CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 009734 88 -PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 88 -P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP 137 (527)
|+++- ++++.-++. .+|+| -+..+...+.+++++|++-+-+-|
T Consensus 93 sP~~~~-~vi~~a~~~----~i~~i--PG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 93 SPGLTP-PLLKAAQEG----PIPLI--PGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCCCCH-HHHHHHHHc----CCCEe--CCCCCHHHHHHHHHCCCCEEEEcc
Confidence 56665 566555432 33333 333344556677777776554444
No 264
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=48.36 E-value=3e+02 Score=29.43 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=68.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCC---CCCH--HHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLP---SISG--FALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP---~mDG--lelL~~Lr~ 101 (527)
..+++||-+-+. +..++++++..|. .|... -+..+..+.+.. .|+.++=.... ..+| +-+++.+.
T Consensus 253 ~~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma- 326 (406)
T PRK15427 253 AFRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA- 326 (406)
T ss_pred CEEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh-
Confidence 356777776553 4566777776664 23332 244566666653 57777633211 1244 55667663
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||.. .... +.+.+..|..+++..|-+.++|...|..++.
T Consensus 327 ----~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 ----VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred ----CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 35789853 3332 3355677899999999999999999998875
No 265
>PLN02823 spermine synthase
Probab=48.36 E-value=1e+02 Score=32.78 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=39.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-----CCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-----SYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-----Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
...+|.+||=|+.+.+..+..|... +-++.. ..|+.+.++. ....||+||+|+.-|
T Consensus 126 ~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---~~~~yDvIi~D~~dp 187 (336)
T PLN02823 126 TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---RDEKFDVIIGDLADP 187 (336)
T ss_pred CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh---CCCCccEEEecCCCc
Confidence 3568999999999999999988532 123433 5677766643 234599999998555
No 266
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.97 E-value=2.2e+02 Score=29.02 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=42.0
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE------eCCCCHHHHHHHHHHHHHhh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL------VKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL------~KP~~~eeL~~~L~~v~rr~ 154 (527)
+++++++++. .++|||...+-.+.+.+.+++..||+... .-|.-..++..-+.+.+.++
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 5778888764 26899999998899999999999986552 23555555555555554443
No 267
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=47.96 E-value=1.5e+02 Score=30.13 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=51.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC---EEEE--EC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY---RVTA--VP---DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy---~V~~--a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
.+|.+|-++......+..+++..+. .|.. .. +....+..++... +|+||+.. ...+...+++++++..
T Consensus 130 ~~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~--~d~vv~~~--~~~~~~~~~~qa~~~g 205 (327)
T cd06382 130 KSFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSG--DNRIIIDC--SADILIELLKQAQQVG 205 (327)
T ss_pred cEEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcC--ceEEEEEC--CHHHHHHHHHHHHHhC
Confidence 4666666655567778888877653 3322 22 4566777777654 89999855 3456788888888776
Q ss_pred cCCCCeEEEEecC
Q 009734 104 ICKNIPVIMMSSQ 116 (527)
Q Consensus 104 ~~~~iPVIilSa~ 116 (527)
......+.+++..
T Consensus 206 ~~~~~~~~i~~~~ 218 (327)
T cd06382 206 MMSEYYHYIITNL 218 (327)
T ss_pred ccccceEEEEecC
Confidence 5444334444544
No 268
>PLN02591 tryptophan synthase
Probab=47.87 E-value=91 Score=31.77 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=44.9
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+.+++++++|.. .++|+|+|+-+. -.....+|.++|+++.|+-.+..+|....+..+.
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 457888888743 478999998655 3456788999999999999999888877666653
No 269
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=47.66 E-value=30 Score=33.14 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC----CCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS----ISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~----mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
..|.. |+..|+.+.. +..+...+..+.... ||.|-+|..+.. .....+++.|.......++.|| .++-++
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l~~l~--~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYLASLP--PDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVI-AEGVES 213 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHHHHHC--GSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEE-EECE-S
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhhhhcc--cccceeecccccccchhhHHHHHHHHHHHhhccccccc-eeecCC
Confidence 44554 7788998654 555555566565544 999999986652 2344555544433222345444 688889
Q ss_pred HHHHHHHHHcCCCEE
Q 009734 119 VSTVYKCMMRGAADY 133 (527)
Q Consensus 119 ~~~~~~al~~GA~Dy 133 (527)
.+....+..+|++.+
T Consensus 214 ~~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 214 EEQLELLKELGVDYI 228 (236)
T ss_dssp HHHHHHHHHTTESEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 999999999998643
No 270
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=47.52 E-value=3.3e+02 Score=29.38 Aligned_cols=91 Identities=10% Similarity=0.161 Sum_probs=56.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
-+|+.+|-++...+.++.-++..+.+ +.. ..|....+... ...||+|++|- ++.. ..++..+-+. ...-.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~---~~~fDvIdlDP--fGs~-~~fld~al~~--~~~~g 141 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR---NRKFHVIDIDP--FGTP-APFVDSAIQA--SAERG 141 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh---CCCCCEEEeCC--CCCc-HHHHHHHHHh--cccCC
Confidence 68999999999999999999877653 333 33444444432 22499999986 4432 3455444222 13346
Q ss_pred EEEEecCCCHHH----HHHHH-HcCC
Q 009734 110 VIMMSSQDSVST----VYKCM-MRGA 130 (527)
Q Consensus 110 VIilSa~~d~~~----~~~al-~~GA 130 (527)
++.+|+.|.... ...|+ +.|+
T Consensus 142 lL~vTaTD~~~L~G~~~~~~~rkYga 167 (374)
T TIGR00308 142 LLLVTATDTSALCGNYPKSCLRKYGA 167 (374)
T ss_pred EEEEEecccHHhcCCChHHHHHHhCC
Confidence 888887764432 33444 4465
No 271
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=47.32 E-value=2.5e+02 Score=28.29 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=56.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC-----------------------C
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-----------------------L 87 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~-----------------------M 87 (527)
..+|..||-++...+..+.-++..+.++.. .|..+.+..... ..||+||+|-- .
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~~-~D~~~~l~~~~~--~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~ 186 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVHE-GDLYDALPTALR--GRVDILAANAPYVPTDAIALMPPEARDHEPRVALD 186 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEEE-eechhhcchhcC--CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence 468999999999999988888877765543 344433321111 24999999841 1
Q ss_pred CCCCHHHHHHHHHhc---ccCCCCeEEEEecCCCHHHHHHHH
Q 009734 88 PSISGFALLTLVMEH---EICKNIPVIMMSSQDSVSTVYKCM 126 (527)
Q Consensus 88 P~mDGlelL~~Lr~~---~~~~~iPVIilSa~~d~~~~~~al 126 (527)
.+.||+++++.|-.. -..+.-.+++.........+...+
T Consensus 187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l 228 (251)
T TIGR03704 187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAF 228 (251)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHH
Confidence 235778777766432 122344555556555555444444
No 272
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=47.19 E-value=1.6e+02 Score=31.21 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=44.9
Q ss_pred cCEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH
Q 009734 31 ALRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (527)
Q Consensus 31 ~lrVLLVDDD~~~r-----~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL 96 (527)
..|+|||-|..... ..+...|+..|+++..+. +..++++.+++.. +|+||- ..|.+-+++.
T Consensus 25 g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~a 99 (357)
T cd08181 25 GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAA 99 (357)
T ss_pred CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHH
Confidence 47999999876523 567888888887665442 3556777777654 898884 5677777777
Q ss_pred HHHH
Q 009734 97 TLVM 100 (527)
Q Consensus 97 ~~Lr 100 (527)
+.+.
T Consensus 100 K~ia 103 (357)
T cd08181 100 KAIA 103 (357)
T ss_pred HHHH
Confidence 7553
No 273
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.97 E-value=2.3e+02 Score=29.64 Aligned_cols=104 Identities=15% Similarity=0.272 Sum_probs=60.8
Q ss_pred cCEEEEEe--cCHHHH---HHHHHHHHhCCCEEEEECCHHH---HHH-------H--HHcCCCCceEEEEeCCCCCCCHH
Q 009734 31 ALRVLLVE--ADDSTR---QIVTALLRKSSYRVTAVPDGLK---AWE-------V--LKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 31 ~lrVLLVD--DD~~~r---~~L~~lL~~~Gy~V~~a~dg~e---ALe-------~--L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
+.+|+||- +.+... ..|..+|++.|+++........ ++. . .......+|+||+ -|.||-
T Consensus 5 ~~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT 80 (296)
T PRK04539 5 FHNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT 80 (296)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH
Confidence 35688873 334444 4455566778888776432111 110 0 0001113677776 277883
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|+..+... ..++||+-+- .|-.+||.- +..+++...|..+++..
T Consensus 81 -~L~aa~~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 81 -FLSVAREIA-PRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGK 125 (296)
T ss_pred -HHHHHHHhc-ccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCC
Confidence 445554332 2478998665 466888985 88999999999887553
No 274
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=46.86 E-value=1.5e+02 Score=28.01 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=48.8
Q ss_pred EEECCHHHHHHHHHcCCCCceEEEEeCCCCCC-------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCC
Q 009734 59 TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (527)
Q Consensus 59 ~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-------DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~ 131 (527)
..+.+.+++.+..+. . +|.|++--..|.. -|++.++++.+.. .+||+.+-+-+ .+.+.++.+.|++
T Consensus 100 ~S~h~~~e~~~a~~~-g--~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI~-~~~i~~l~~~Ga~ 172 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL-G--ADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGIT-PENIPELREAGAD 172 (180)
T ss_dssp EEESSHHHHHHHHHC-T--TSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTHHHHHHTT-S
T ss_pred eecCcHHHHHHhhhc-C--CCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCCC-HHHHHHHHHcCCC
Confidence 457899987666543 3 7999998776643 3899999987653 58999998864 5556788899998
Q ss_pred EEE
Q 009734 132 DYL 134 (527)
Q Consensus 132 DyL 134 (527)
++-
T Consensus 173 gvA 175 (180)
T PF02581_consen 173 GVA 175 (180)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 275
>PLN02591 tryptophan synthase
Probab=46.85 E-value=2.9e+02 Score=28.11 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=66.9
Q ss_pred hHHhhhcC---c-CEEEEEecCHHHHHHHHHHHHhCCCEEEE-E-CCH-HHHHHHHHcCCCCceEEEE-e-CCCCC----
Q 009734 23 WETFLQRM---A-LRVLLVEADDSTRQIVTALLRKSSYRVTA-V-PDG-LKAWEVLKGRPRNIDLILT-E-VDLPS---- 89 (527)
Q Consensus 23 ~e~~~~~~---~-lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a-~dg-~eALe~L~~~~~~pDLVLl-D-l~MP~---- 89 (527)
.++|+.+. . --|||.|=.......+...+++.|+..+. + .+. .+=++.+.... .+.|-+ - ..-.+
T Consensus 95 ~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~~~~ 172 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGARAS 172 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCCCcC
Confidence 35555442 2 34666666667777788888888986444 4 222 33334443333 233322 1 11111
Q ss_pred --CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 009734 90 --ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 90 --mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP 137 (527)
.+-.++++++++. .++||++=.+-.+.+.+.++...||++.++--
T Consensus 173 ~~~~~~~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 173 VSGRVESLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CchhHHHHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 1234557777764 48899976666689999999999999999763
No 276
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=46.83 E-value=1.1e+02 Score=34.44 Aligned_cols=65 Identities=11% Similarity=0.175 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+.+.++++ .. .|+|.+|.--.. ..-++++++|++. +++++||+ ..-...+.+..++++||+...+
T Consensus 251 ~r~~~l~~-ag--~d~i~iD~~~g~~~~~~~~i~~ik~~--~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 251 ERLEHLVK-AG--VDVVVLDSSQGDSIYQLEMIKYIKKT--YPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHH-cC--CCEEEEeCCCCCcHHHHHHHHHHHHh--CCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 33444444 33 899999984211 1124788888764 35666653 4456788899999999998754
No 277
>PLN02775 Probable dihydrodipicolinate reductase
Probab=46.81 E-value=3.2e+02 Score=28.54 Aligned_cols=105 Identities=12% Similarity=0.177 Sum_probs=57.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE------------------------CCHHHHHHHHHcCCCCceEEEEeC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV------------------------PDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a------------------------~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
+.++|+|..---.+...+.+.+...+++++.+ .+..+++..+.... ||+|++|+
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~--~~~VvIDF 87 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEY--PNLIVVDY 87 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccC--CCEEEEEC
Confidence 34677777766666665555544455554442 44555554444333 89999999
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCeEEE-EecCCCHHHHHHHHHcCCCEEEeCCCCHH
Q 009734 86 DLPSISGFALLTLVMEHEICKNIPVIM-MSSQDSVSTVYKCMMRGAADYLVKPVRRN 141 (527)
Q Consensus 86 ~MP~mDGlelL~~Lr~~~~~~~iPVIi-lSa~~d~~~~~~al~~GA~DyL~KP~~~e 141 (527)
..|.. -++.++...+. .+|+|+ .|+....+....+-..++--++.-.|...
T Consensus 88 T~P~a-~~~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiG 139 (286)
T PLN02775 88 TLPDA-VNDNAELYCKN----GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQ 139 (286)
T ss_pred CChHH-HHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHH
Confidence 99974 23444444333 455555 45655443332222234444555555544
No 278
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.74 E-value=84 Score=32.93 Aligned_cols=92 Identities=15% Similarity=0.038 Sum_probs=57.5
Q ss_pred EEEEEecCHHHHHHHHHHHH---hC-C-CEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 33 RVLLVEADDSTRQIVTALLR---KS-S-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~---~~-G-y~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
-|||=|.+-...-.+...++ +. . ..| +.+.+.+++.+.++.. +|+|++| +|+--+--+.++.++
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aG---aDiImLD-nmspe~l~~av~~~~------ 247 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAHG---AQSVLLD-NFTLDMMREAVRVTA------ 247 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHhhc------
Confidence 46666666554433444442 21 1 233 4578999999999753 7999999 454333333333332
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.-.+|-.|+--..+.+.+....|++-.-
T Consensus 248 ~~~~lEaSGGIt~~ni~~yA~tGVD~IS 275 (294)
T PRK06978 248 GRAVLEVSGGVNFDTVRAFAETGVDRIS 275 (294)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2246777888899999888889986543
No 279
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=46.38 E-value=94 Score=32.37 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=50.1
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.+.+.++|.+.++.. +|+|++| +|+--+--++.+.+++.. +. .+|-.|+--..+.+......|++-+.+
T Consensus 193 eVEv~tleqa~ea~~ag---aDiI~LD-n~~~e~l~~av~~~~~~~--~~-~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 193 VVEADTPKEAIAALRAQ---PDVLQLD-KFSPQQATEIAQIAPSLA--PH-CTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhhccC--CC-eEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 44578999999999753 7999999 565444444555443221 23 466678888999999999999876644
No 280
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=46.35 E-value=3e+02 Score=27.47 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=58.2
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeE
Q 009734 38 EADDSTRQIVTALLRKSSYRVTA-V-----PDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~V~~-a-----~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPV 110 (527)
.|.....+.++.+ ++.++-|.. . .+..+..+.+++.. .|.|-.+...++ .--++.+++++ .++||
T Consensus 123 ~~p~~l~eiv~av-r~~~~pVsvKir~g~~~~~~~la~~l~~aG--~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipV 194 (233)
T cd02911 123 KDPERLSEFIKAL-KETGVPVSVKIRAGVDVDDEELARLIEKAG--ADIIHVDAMDPGNHADLKKIRDIS-----TELFI 194 (233)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEEcCCcCcCHHHHHHHHHHhC--CCEEEECcCCCCCCCcHHHHHHhc-----CCCEE
Confidence 3444555555554 344554332 2 34555556666544 788877766654 22356666664 36899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
|..-+-.+.+.+.+++..||+...+
T Consensus 195 IgnGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 195 IGNNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9888888999999999999887754
No 281
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.33 E-value=1.9e+02 Score=34.37 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=59.8
Q ss_pred CEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC--CCCCCC-HHHHHHHHHhcccC
Q 009734 32 LRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSIS-GFALLTLVMEHEIC 105 (527)
Q Consensus 32 lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl--~MP~mD-GlelL~~Lr~~~~~ 105 (527)
.+|.||.-|.. ..+.++.+-+..|+.+..+.+..+..+.++... .+|+||+|. .++... -.+.+..|... ..
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDTAGRs~~d~~l~eel~~l~~~-~~ 293 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDTVGMSQRDRNVSEQIAMLCGV-GR 293 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeCCCCCccCHHHHHHHHHHhcc-CC
Confidence 58888887753 235566666777877777778888777776543 479999996 222221 23333333221 22
Q ss_pred CCCeEEEEecCCCHH---HHHHHHHc----CCCEEEe
Q 009734 106 KNIPVIMMSSQDSVS---TVYKCMMR----GAADYLV 135 (527)
Q Consensus 106 ~~iPVIilSa~~d~~---~~~~al~~----GA~DyL~ 135 (527)
+.-.++++++....+ .+.+.+.. +.+.+|.
T Consensus 294 p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIl 330 (767)
T PRK14723 294 PVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCII 330 (767)
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEE
Confidence 344566676654433 34455543 5677754
No 282
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=46.15 E-value=1.9e+02 Score=29.46 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=50.0
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhC--CCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKS--SYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~--Gy~V~~-------a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.+|.+|..+.. ....++..|++. +.+++. ..+....+..+.... +|+||+... ..+...++++
T Consensus 139 ~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~--~d~ii~~~~--~~~~~~~~~~ 214 (346)
T cd06330 139 KTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAK--PDAIFSSLW--GGDLVTFVRQ 214 (346)
T ss_pred cEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcC--CCEEEEecc--cccHHHHHHH
Confidence 45666665522 345566667766 444432 235556666666544 899987533 4677888898
Q ss_pred HHhcccCCCCeEEEEecC
Q 009734 99 VMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~ 116 (527)
+++....+.+++|.....
T Consensus 215 ~~~~g~~~~~~~~~~~~~ 232 (346)
T cd06330 215 ANARGLFDGTTVVLTLTG 232 (346)
T ss_pred HHhcCcccCceEEeeccc
Confidence 887765556777765543
No 283
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.07 E-value=2.3e+02 Score=31.30 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=52.7
Q ss_pred cCcCEEEEEecCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeCCCCCCC--HHHHH
Q 009734 29 RMALRVLLVEADDST---RQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVDLPSIS--GFALL 96 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~---r~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl~MP~mD--GlelL 96 (527)
+...+|+||+-|+.- .+.++.+-+..++.+.... ++ .++++.++... +|+||+|.- |.. --+++
T Consensus 126 ~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~--~DvViIDTa--Gr~~~d~~lm 201 (429)
T TIGR01425 126 RKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN--FDIIIVDTS--GRHKQEDSLF 201 (429)
T ss_pred HCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCC--CCEEEEECC--CCCcchHHHH
Confidence 345789999987633 3333333444565555433 32 24566665433 899999973 222 12344
Q ss_pred HHHHhcc--cCCCCeEEEEecCC--CHHHHHHHHH--cCCCEEEe
Q 009734 97 TLVMEHE--ICKNIPVIMMSSQD--SVSTVYKCMM--RGAADYLV 135 (527)
Q Consensus 97 ~~Lr~~~--~~~~iPVIilSa~~--d~~~~~~al~--~GA~DyL~ 135 (527)
++|.... ..++-.++++.+.. +.....++|. .+...+|.
T Consensus 202 ~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~Il 246 (429)
T TIGR01425 202 EEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVII 246 (429)
T ss_pred HHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEE
Confidence 5554321 22444455555432 2233445553 45666653
No 284
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=45.97 E-value=2.6e+02 Score=27.80 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=48.6
Q ss_pred chHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHH
Q 009734 22 KWETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLT 97 (527)
Q Consensus 22 ~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~ 97 (527)
.+-..+.....+|..||=++...+..++.+...|. .+.. ..+..+..... . ..+|+|++...+.-+ +-..+++
T Consensus 57 ~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-~--~~fD~V~~~~vl~~~~~~~~~l~ 133 (255)
T PRK11036 57 QTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-E--TPVDLILFHAVLEWVADPKSVLQ 133 (255)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-C--CCCCEEEehhHHHhhCCHHHHHH
Confidence 34444444567999999999999999998887765 2333 34554432222 2 249999987654322 3345666
Q ss_pred HHHh
Q 009734 98 LVME 101 (527)
Q Consensus 98 ~Lr~ 101 (527)
.+..
T Consensus 134 ~~~~ 137 (255)
T PRK11036 134 TLWS 137 (255)
T ss_pred HHHH
Confidence 6654
No 285
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=45.91 E-value=2.4e+02 Score=28.89 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=51.1
Q ss_pred CEEEEEecCHH----HHHHHHHHHHh--CCCEEEEE--------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRK--SSYRVTAV--------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~--~Gy~V~~a--------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~ 97 (527)
.+|.||-++.. ..+.++..|++ .|.+|+.. .|....+..++... +|+|++...-+ ++..+++
T Consensus 144 k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~--~d~v~~~~~~~--~~~~~~~ 219 (342)
T cd06329 144 KKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASG--ADTVITGNWGN--DLLLLVK 219 (342)
T ss_pred ceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcC--CCEEEEcccCc--hHHHHHH
Confidence 46666654433 44567777888 88876531 44556677776654 99999966433 6788999
Q ss_pred HHHhcccCCCCeEEEEec
Q 009734 98 LVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa 115 (527)
++++... +.+++..+.
T Consensus 220 ~~~~~g~--~~~~~~~~~ 235 (342)
T cd06329 220 QAADAGL--KLPFYTPYL 235 (342)
T ss_pred HHHHcCC--CceEEeccc
Confidence 9987654 566665443
No 286
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.86 E-value=2.3e+02 Score=29.83 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=61.0
Q ss_pred CEEEEEec--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHcCCCCceEEEEeCCCCCC
Q 009734 32 LRVLLVEA--DDS---TRQIVTALLRKSSYRVTAVPDGLKAWEV----------------LKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 32 lrVLLVDD--D~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~----------------L~~~~~~pDLVLlDl~MP~m 90 (527)
.+|+||-. .+. ....|..+|+..|++|.........+.. .......+|+||+ -|.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 46888843 233 3455666677889888775533222210 0111112677776 277
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|| .+|+..+... ..++||+-+- .|-.+||.- +..+++...|+++++..
T Consensus 82 DG-T~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 82 DG-TILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CH-HHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 88 2344444322 2478988654 366788876 77899999999887654
No 287
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=45.81 E-value=1.6e+02 Score=30.22 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=47.5
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.+.+.+++.+.++. ..|.|.+|-..|. +--++++.++.. .+++|++++-+ -+.+.+.+..+.|++.+..
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~AsGG-I~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAAGG-INIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEECC-CCHHHHHHHHHcCCcEEEE
Confidence 3457899999888754 2799999955553 112334444322 24678776554 4788888999999988754
No 288
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=45.80 E-value=2.3e+02 Score=29.75 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=52.5
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNE 142 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~ee 142 (527)
+..+..+++.. .|+.++ ...|..-|+-+++.+. ..+|||. |.... ..+.+..|..++++.|.+.++
T Consensus 290 ~~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA-----~G~PVIa-s~~~g---~~e~i~~~~~G~lv~~~d~~~ 355 (396)
T cd03818 290 PYDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA-----CGCLVVG-SDTAP---VREVITDGENGLLVDFFDPDA 355 (396)
T ss_pred CHHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH-----CCCCEEE-cCCCC---chhhcccCCceEEcCCCCHHH
Confidence 45666666653 466665 3346666677777763 3678886 33332 334556788999999999999
Q ss_pred HHHHHHHHHHh
Q 009734 143 LRNLWQHVWRR 153 (527)
Q Consensus 143 L~~~L~~v~rr 153 (527)
|...|..++..
T Consensus 356 la~~i~~ll~~ 366 (396)
T cd03818 356 LAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHhC
Confidence 99999988753
No 289
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.65 E-value=68 Score=32.90 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
+.+++++++|.. .++|+|+|+-+. -...+.+|.++|+++.|+--+..+|....++.+
T Consensus 78 ~~~~~~~~~r~~---~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGE---IKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 467888888743 578999998664 355788999999999999988888876555554
No 290
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=45.64 E-value=2.8e+02 Score=28.64 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=50.0
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~M-----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+.+.+.|..+.+. . .|.|.+.-.- .+...++++.++++.- ..++|||.-.+..+...+.+++.+||+...+
T Consensus 180 v~s~~~a~~a~~~-G--~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVDA-G--ADGIVVSNHGGRQLDGAPATIDALPEIVAAV-GGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHHC-C--CCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4566776655543 2 7877774321 1334577777776532 1369999988999999999999999998864
Q ss_pred C
Q 009734 136 K 136 (527)
Q Consensus 136 K 136 (527)
=
T Consensus 256 g 256 (299)
T cd02809 256 G 256 (299)
T ss_pred c
Confidence 3
No 291
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.62 E-value=1.6e+02 Score=30.22 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc-CCCCeEEEEecCCCHHHH
Q 009734 44 RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI-CKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~-~~~iPVIilSa~~d~~~~ 122 (527)
...+..+|+..|+++. .. .+|+||+ =|.|| .+|+.++.... ..++||+-+-
T Consensus 17 ~~~l~~~l~~~g~~~~-------------~~--~~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN-------- 68 (265)
T PRK04885 17 ASKLKKYLKDFGFILD-------------EK--NPDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVH-------- 68 (265)
T ss_pred HHHHHHHHHHcCCccC-------------Cc--CCCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEe--------
Confidence 4445556666676631 01 3788887 27788 35565554321 1478988554
Q ss_pred HHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 123 YKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 123 ~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.|-.+||. .+..+++...+.++.+..
T Consensus 69 -----~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 69 -----TGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred -----CCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 57788998 588899998998887643
No 292
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=45.52 E-value=1e+02 Score=29.09 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=49.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE---------------EECCHHHHHH-HHH-cCCCCceEEEEeCCC-CCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT---------------AVPDGLKAWE-VLK-GRPRNIDLILTEVDL-PSIS 91 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~---------------~a~dg~eALe-~L~-~~~~~pDLVLlDl~M-P~mD 91 (527)
+.+||||+.--..+.+.+.+.|+...+.+. ....+. ... ++. ....+||+||+|--- -+-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCHH
Confidence 568999999999999999999987654322 112222 222 222 112459999999633 2323
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.+.+.-.|+.........+|+||+..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 34444455444433456899999754
No 293
>PRK04296 thymidine kinase; Provisional
Probab=45.50 E-value=22 Score=34.09 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=43.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCC-C-CCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD-L-PSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~-M-P~mDGlelL~~Lr~~~~~ 105 (527)
...+|+++-..-..+.....++.+.|..+. .+....++++.+......+|+|++|=- + +.-.-.++++.++.
T Consensus 29 ~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~v~~l~~~l~~---- 104 (190)
T PRK04296 29 RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQVVQLAEVLDD---- 104 (190)
T ss_pred cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHHHHHHHHHHHH----
Confidence 457899884311223334445666676443 356677777776542234899999952 2 22113445555543
Q ss_pred CCCeEEEE
Q 009734 106 KNIPVIMM 113 (527)
Q Consensus 106 ~~iPVIil 113 (527)
..+.||+.
T Consensus 105 ~g~~vi~t 112 (190)
T PRK04296 105 LGIPVICY 112 (190)
T ss_pred cCCeEEEE
Confidence 34566653
No 294
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=45.12 E-value=2.9e+02 Score=29.07 Aligned_cols=101 Identities=15% Similarity=0.210 Sum_probs=58.2
Q ss_pred cCEEEEEec----CHHHHHHHHHHHHhCC-CEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC------------CC
Q 009734 31 ALRVLLVEA----DDSTRQIVTALLRKSS-YRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (527)
Q Consensus 31 ~lrVLLVDD----D~~~r~~L~~lL~~~G-y~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------mD 91 (527)
...+++||- .+...+.++.+=+... ..|.. +.+.+.|..+++.. .|.|.+.+ -|+ .-
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aG---aD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAG---ADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcC---CCEEEECC-CCCcCcccceeCCCCCC
Confidence 467777763 2333333333332222 34442 56778887777643 78887632 111 11
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
-+.++..+.+.....++|||.--+-.+...+.+++.+||+..++
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23344444332211268998766777889999999999998875
No 295
>PLN02366 spermidine synthase
Probab=45.10 E-value=1.5e+02 Score=31.12 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=45.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC--C---CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCC-----HHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS--S---YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~--G---y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-----GlelL~~L 99 (527)
..+|.+||=|+.+.+..++.|... + -++.. ..|+.+.++.... ..||+||+|..-|..- .-++++.+
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~--~~yDvIi~D~~dp~~~~~~L~t~ef~~~~ 192 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE--GTYDAIIVDSSDPVGPAQELFEKPFFESV 192 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC--CCCCEEEEcCCCCCCchhhhhHHHHHHHH
Confidence 368999999999888888887542 2 23443 4566666654322 3499999998766322 23556666
Q ss_pred Hhc
Q 009734 100 MEH 102 (527)
Q Consensus 100 r~~ 102 (527)
+..
T Consensus 193 ~~~ 195 (308)
T PLN02366 193 ARA 195 (308)
T ss_pred HHh
Confidence 543
No 296
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=44.99 E-value=3e+02 Score=28.66 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=67.4
Q ss_pred CEEEEEec---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 32 LRVLLVEA---DD-STRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 32 lrVLLVDD---D~-~~r~~L~~lL~~~Gy--~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
++++||.+ +. .....+..+.+..+. .|.... +..+..+++.. .|+.++-.. .+.-|+-+++.+.
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--- 324 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--- 324 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH---
Confidence 56677763 11 344556666666554 244432 44566666653 577776533 3344677777774
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||.... .. ..+.+..|..+++..|-+.++|...|.+++.
T Consensus 325 --~G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 325 --CGTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred --cCCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 2678986443 22 2234567888999999999999999988875
No 297
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=44.95 E-value=80 Score=29.26 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=43.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHcCCCCceEEEEeCCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP----DGLKAWEVLKGRPRNIDLILTEVDLPS 89 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~----dg~eALe~L~~~~~~pDLVLlDl~MP~ 89 (527)
...+|+||.......+-|..+|.+.|..|..+. +..+ .++. -|||++-..-|.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~---~v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS---KVHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH---HHhh----CCEEEEecCCCC
Confidence 357999999999999999999999999999887 4443 3332 699999987775
No 298
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=44.88 E-value=54 Score=32.52 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=34.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKA 67 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eA 67 (527)
+++|.|||-.--+...+...|++.|+++....+.++.
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i 37 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEI 37 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHH
Confidence 3689999999999999999999999999999998874
No 299
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.86 E-value=1.2e+02 Score=30.07 Aligned_cols=59 Identities=14% Similarity=0.216 Sum_probs=37.4
Q ss_pred eCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009734 84 EVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146 (527)
Q Consensus 84 Dl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~ 146 (527)
++.|-.-+.++.+++|++.. ++ -+|=.-..-+.+.+.++.++|| +||+-|.-..++...
T Consensus 34 Eit~~tp~a~~~I~~l~~~~--~~-~~vGAGTVl~~e~a~~ai~aGA-~FivSP~~~~~vi~~ 92 (201)
T PRK06015 34 EITLRTPAALDAIRAVAAEV--EE-AIVGAGTILNAKQFEDAAKAGS-RFIVSPGTTQELLAA 92 (201)
T ss_pred EEeCCCccHHHHHHHHHHHC--CC-CEEeeEeCcCHHHHHHHHHcCC-CEEECCCCCHHHHHH
Confidence 33444445677777776542 33 2333344457889999999998 577777766666644
No 300
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=44.73 E-value=67 Score=33.59 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHHhh
Q 009734 91 SGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVI--ilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~rr~ 154 (527)
-++++++++.+. ..+||| ...+-...+.+..++++||+.+++ |.-++.+....+..++...
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 478899999775 368998 666666999999999999999854 3446666666666655443
No 301
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=44.71 E-value=1.4e+02 Score=32.02 Aligned_cols=80 Identities=24% Similarity=0.223 Sum_probs=52.4
Q ss_pred cCEEEEEecCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH
Q 009734 31 ALRVLLVEADDST-----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (527)
Q Consensus 31 ~lrVLLVDDD~~~-----r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL 96 (527)
..|+|||-|.... .+.+...|+..|+++..+. +..++++.++... +|+|| -+.|.+-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~II---aiGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFIL---AVGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEE---EeCChHHHHHH
Confidence 4699999886444 3567888888888765542 3456777777654 89988 35566667777
Q ss_pred HHHHhc---------------ccCCCCeEEEEec
Q 009734 97 TLVMEH---------------EICKNIPVIMMSS 115 (527)
Q Consensus 97 ~~Lr~~---------------~~~~~iPVIilSa 115 (527)
+.+.-. ...+.+|+|.+..
T Consensus 103 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 103 KAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 665331 0024579888754
No 302
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=44.67 E-value=2.2e+02 Score=29.23 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=50.4
Q ss_pred cCEEEEEecCH----HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 31 ALRVLLVEADD----STRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
..+|.+|-.+. .....++..|++.|.+++. + .|....+..++... ||+|++ ...+-++..+++++
T Consensus 132 ~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~--~~~~~~~~~~~~~~ 207 (334)
T cd06356 132 GKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQKIQAAK--PDFVMS--ILVGANHLSFYRQW 207 (334)
T ss_pred CCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHHHHHhcC--CCEEEE--eccCCcHHHHHHHH
Confidence 34565554333 2345667788888988753 2 35555666676654 999996 34455788899999
Q ss_pred HhcccCCCCeEEEE
Q 009734 100 MEHEICKNIPVIMM 113 (527)
Q Consensus 100 r~~~~~~~iPVIil 113 (527)
++... ..+|++..
T Consensus 208 ~~~G~-~~~~~~~~ 220 (334)
T cd06356 208 AAAGL-GNIPMASS 220 (334)
T ss_pred HHcCC-ccCceeee
Confidence 87764 35677653
No 303
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=44.66 E-value=1.2e+02 Score=30.69 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=68.8
Q ss_pred hhhcCcCEEEEEec-CHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 26 FLQRMALRVLLVEA-DDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 26 ~~~~~~lrVLLVDD-D~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
++.+...+|=.|-. .......|..-|.++||+|.. +++...|..++++...+|-+++-|-.|++.+|++.
T Consensus 34 rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT------ 107 (262)
T KOG3040|consen 34 RLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT------ 107 (262)
T ss_pred HHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC------
Confidence 34434466766665 345566778888899998764 67888888999988888999999999999999752
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..|+.-||-+.. +-|+.+.|-.+++-++.
T Consensus 108 --s~pn~VViglap--------------------e~F~y~~ln~AFrvL~e 136 (262)
T KOG3040|consen 108 --SDPNCVVIGLAP--------------------EGFSYQRLNRAFRVLLE 136 (262)
T ss_pred --CCCCeEEEecCc--------------------ccccHHHHHHHHHHHHc
Confidence 235666664433 34566666666665543
No 304
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=44.37 E-value=2.2e+02 Score=27.77 Aligned_cols=86 Identities=10% Similarity=0.104 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeCCCCC---------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH---HHHcC
Q 009734 62 PDGLKAWEVLKGRPRNIDLILTEVDLPS---------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK---CMMRG 129 (527)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MP~---------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~---al~~G 129 (527)
.+-.+.++.+.... +|.|++|+.-.. .+-.+++..++..... ...+++=....+.....+ ++..|
T Consensus 8 ~~~~~~~~~a~~~g--~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~-~~~~~VRvn~~~~~~~~~Dl~~l~~g 84 (221)
T PF03328_consen 8 ANSPKMLEKAAASG--ADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAA-GSEIIVRVNSLDSPHIERDLEALDAG 84 (221)
T ss_dssp STSHHHHHHHHTTC--SSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTS-SSEEEEE-SSTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhcC--CCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccc-cccceecCCCCCcchhhhhhhhcccC
Confidence 34455556665544 999999998866 4555666666553221 234444444444444555 99999
Q ss_pred CCEEEeCCC-CHHHHHHHHHHH
Q 009734 130 AADYLVKPV-RRNELRNLWQHV 150 (527)
Q Consensus 130 A~DyL~KP~-~~eeL~~~L~~v 150 (527)
++.+++-=+ +.++++.+++.+
T Consensus 85 ~~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 85 ADGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SSEEEETT--SHHHHHHHHHHH
T ss_pred CCeeeccccCcHHHHHHHHHHH
Confidence 999876544 566776665544
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=44.35 E-value=3.5e+02 Score=29.85 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=44.6
Q ss_pred hcCcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEEC---CHHHH-HHHHHcCCCCceEEEEeCC--CCCCCHHHHHHH
Q 009734 28 QRMALRVLLVEADDS---TRQIVTALLRKSSYRVTAVP---DGLKA-WEVLKGRPRNIDLILTEVD--LPSISGFALLTL 98 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~---dg~eA-Le~L~~~~~~pDLVLlDl~--MP~mDGlelL~~ 98 (527)
.+...+|+||+-|.. ..+.++.+.+..|..+.... ++.+. .+.++... ..|+||+|.- ++. --+++++
T Consensus 120 ~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTAGr~~~--d~~lm~E 196 (437)
T PRK00771 120 KKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTAGRHAL--EEDLIEE 196 (437)
T ss_pred HHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECCCcccc--hHHHHHH
Confidence 334579999998753 34445555666777665532 33322 22332221 2599999974 332 1233333
Q ss_pred HHhc--ccCCCCeEEEEecCC
Q 009734 99 VMEH--EICKNIPVIMMSSQD 117 (527)
Q Consensus 99 Lr~~--~~~~~iPVIilSa~~ 117 (527)
|+.. ...++-.++++.+..
T Consensus 197 l~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 197 MKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred HHHHHHHhcccceeEEEeccc
Confidence 3322 122455566665544
No 306
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=44.31 E-value=1.3e+02 Score=31.06 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=50.1
Q ss_pred cCEEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 31 ALRVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
..+|.|+-++. ...+.++..|+..|.+|+.. .|....+..++... ||+||+= ..+-+...+++++
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~--pd~v~~~--~~~~~~~~~~~~~ 208 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAK--PDVVVST--VNGDSNVAFFKQL 208 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhC--CCEEEEe--ccCCchHHHHHHH
Confidence 35676665443 44556667788889887642 24555666666554 8999973 4455778899999
Q ss_pred HhcccCCC-CeEEE
Q 009734 100 MEHEICKN-IPVIM 112 (527)
Q Consensus 100 r~~~~~~~-iPVIi 112 (527)
++....+. ++++.
T Consensus 209 ~~~G~~~~~~~~~~ 222 (348)
T cd06355 209 KAAGITASKVPVLS 222 (348)
T ss_pred HHcCCCccCCeeEE
Confidence 88765432 45553
No 307
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.10 E-value=2.3e+02 Score=29.61 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=55.1
Q ss_pred EEEEecCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 34 VLLVEADDSTRQIVTALL----RKSSY--RV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL----~~~Gy--~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
|||=|.+-...-.+...+ +..++ .| +.+.+.++|.+.+... +|+|.+| +|.--+=-++++.++.. .+
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~G---aD~I~LD-n~~~e~l~~av~~~~~~--~~ 242 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEYG---ADIIMLD-NMPVDLMQQAVQLIRQQ--NP 242 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHHHhc--CC
Confidence 555554433332233333 33453 33 3478999999998643 7999999 33322222233333322 24
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
++|+. .++--..+.+.+....|++..-
T Consensus 243 ~i~le-AsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 243 RVKIE-ASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred CeEEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 55544 5656678888899999987664
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=43.88 E-value=3.2e+02 Score=30.22 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=51.9
Q ss_pred cCEEEEEecCHHH---HHHHHHHHHhCCCEEEEEC---CHHH----HHHHHHcCCCCceEEEEeCC--CCC-CCHHHHHH
Q 009734 31 ALRVLLVEADDST---RQIVTALLRKSSYRVTAVP---DGLK----AWEVLKGRPRNIDLILTEVD--LPS-ISGFALLT 97 (527)
Q Consensus 31 ~lrVLLVDDD~~~---r~~L~~lL~~~Gy~V~~a~---dg~e----ALe~L~~~~~~pDLVLlDl~--MP~-mDGlelL~ 97 (527)
..+|+||+-|..- .+.++.+.+..|..+.... ++.+ +++..+.. .+|+||+|.- ++. -..++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcccCHHHHHHHH
Confidence 6789999988432 2344445566777666542 4433 33333333 3899999972 221 23344444
Q ss_pred HHHhcccCCCCeEEEEecCCCHHH--HHHHHH--cCCCEEEe
Q 009734 98 LVMEHEICKNIPVIMMSSQDSVST--VYKCMM--RGAADYLV 135 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa~~d~~~--~~~al~--~GA~DyL~ 135 (527)
.+...- .++-.+.++.+....+. ..+.+. .+...+|.
T Consensus 207 ~i~~~v-~p~evllVlda~~gq~av~~a~~F~~~~~i~giIl 247 (433)
T PRK10867 207 AIKAAV-NPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVIL 247 (433)
T ss_pred HHHHhh-CCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEE
Confidence 454321 23333555555442222 223332 45566654
No 309
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=43.82 E-value=58 Score=31.69 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=44.1
Q ss_pred EEEEEecC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHH
Q 009734 33 RVLLVEAD---------DSTRQIVTALLR-KSSYRVTAVPDGLKAW-EVLKGRPRNIDLILTEVDLPS-ISGFALLTLVM 100 (527)
Q Consensus 33 rVLLVDDD---------~~~r~~L~~lL~-~~Gy~V~~a~dg~eAL-e~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr 100 (527)
|||||... +.....|+.+|+ ..+|+|+...+....- +.|+ .+|+||+....+. ++- +..+.|+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~----~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLK----GYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHC----T-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhc----CCCEEEEECCCCCcCCH-HHHHHHH
Confidence 67777766 367888999998 7799999877633321 2342 3999999877753 333 2233332
Q ss_pred hcccCCCCeEEEEe
Q 009734 101 EHEICKNIPVIMMS 114 (527)
Q Consensus 101 ~~~~~~~iPVIilS 114 (527)
+- .....++|.+=
T Consensus 76 ~~-v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DY-VENGGGLVGLH 88 (217)
T ss_dssp HH-HHTT-EEEEEG
T ss_pred HH-HHcCCCEEEEc
Confidence 21 11356888774
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=43.69 E-value=3.8e+02 Score=28.12 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=45.8
Q ss_pred cCcCEEEEEecCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeCC--CCCCCH-HHH
Q 009734 29 RMALRVLLVEADDSTR---QIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVD--LPSISG-FAL 95 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r---~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl~--MP~mDG-lel 95 (527)
....+|+|++-|..-. +.+...-+..+..++... ++ .+++...... .+|+||+|.- ++..+. ++-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~--~~D~ViIDTaGr~~~~~~l~~e 217 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKAR--GIDVLIIDTAGRLHNKTNLMEE 217 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCCcCCHHHHHH
Confidence 3457999999876322 334444555566655442 22 2333333333 4999999973 332222 233
Q ss_pred HHHHHhc-----ccCCCCeEEEEecCCCHH
Q 009734 96 LTLVMEH-----EICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 96 L~~Lr~~-----~~~~~iPVIilSa~~d~~ 120 (527)
++.+... ...++-.++++.+.....
T Consensus 218 L~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 218 LKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred HHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 3333221 122344566666655443
No 311
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.48 E-value=1.4e+02 Score=31.32 Aligned_cols=92 Identities=14% Similarity=0.077 Sum_probs=58.4
Q ss_pred EEEEEecCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 33 RVLLVEADDSTRQIVTALL----RKSSY--RV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL----~~~Gy--~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
-|||=|.+-...-.+...+ +..++ .| +.+.+.+++.+.+... +|+|++| +|.--+--+.++.++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~ag---aDiImLD-nmspe~l~~av~~~~----- 239 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAG---ADIIMLD-NMSLEQIEQAITLIA----- 239 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHhc-----
Confidence 4677666655543444444 33443 33 4478999999999753 7999999 443322333333332
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.-.+|-.|+--..+.+..-...|+|-.-
T Consensus 240 -~~~~leaSGGI~~~ni~~yA~tGVD~Is 267 (290)
T PRK06559 240 -GRSRIECSGNIDMTTISRFRGLAIDYVS 267 (290)
T ss_pred -CceEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 2246677888899999888889986553
No 312
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=43.25 E-value=1.9e+02 Score=30.05 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=50.2
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+.+.++|.+.++.. +|+|++| +|+--+-.+.++.|++.. +. .+|-.|+--..+.+......|++-+.
T Consensus 192 eVEv~tleea~ea~~~G---aDiI~lD-n~~~e~l~~~v~~l~~~~--~~-~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 192 TVEADTIEQALTVLQAS---PDILQLD-KFTPQQLHHLHERLKFFD--HI-PTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred EEECCCHHHHHHHHHcC---cCEEEEC-CCCHHHHHHHHHHHhccC--CC-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 34578999999999753 8999999 555555555555554322 23 35667888899999999999987654
No 313
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=43.11 E-value=3.7e+02 Score=27.17 Aligned_cols=108 Identities=17% Similarity=0.207 Sum_probs=67.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHcCCCCceEEEEeCCC-C----CCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~M-P----~mDGlelL~~Lr~ 101 (527)
..+++||-+.+. ...++.+.+..|+ .|.... +..+..+.+.. .|++++=... + ..-|+.+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 467888877553 3456666666543 344332 44566666653 5776653221 1 123677788774
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||... ... ..+.+..|..+++..|-+.++|...|.+++.
T Consensus 293 ----~G~PvI~s~-~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 ----SGVPVVATR-HGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred ----cCCCEEEeC-CCC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 367888533 222 2344456778899999999999999988764
No 314
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=42.95 E-value=2.7e+02 Score=31.62 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHc---CCCCceEEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 43 TRQIVTALLRKSSYRVTA--VPDGLKAWEVLKG---RPRNIDLILTEVD----LPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~---~~~~pDLVLlDl~----MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
....+...|+..|+.+.. +..+...+..|.. -+ ||.|=+|-. ++. | -.+++.|.......++.|| .
T Consensus 540 ~~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~--~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l~~~vi-a 614 (660)
T PRK11829 540 EALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLP--IHMIKLDKSFVKNLPE-D-DAIARIISCVSDVLKVRVM-A 614 (660)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCC--CcEEEECHHHHhcccC-C-HHHHHHHHHHHHHcCCeEE-E
Confidence 344455667888998665 6788888888876 55 999999842 332 2 2333433322211345554 5
Q ss_pred ecCCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHHH
Q 009734 114 SSQDSVSTVYKCMMRGAAD----YLVKPVRRNELRNLW 147 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~D----yL~KP~~~eeL~~~L 147 (527)
.+-.+.+....+.++|++. |+.||....++...+
T Consensus 615 egVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 615 EGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred ecCCCHHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 7778888888999999853 478999998876443
No 315
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=42.87 E-value=2.3e+02 Score=27.61 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=47.2
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP~m---DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.... ++ ++++|+..-++ --+++++++++. .++|||.-.+-.+.+.+.++++.|+++.++
T Consensus 147 ~~~~~~~~~~~~g--a~~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG--VKAIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445556565433 34 56677643221 227888888764 368999988888999999999999999875
No 316
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=42.78 E-value=70 Score=28.01 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=8.3
Q ss_pred HHHHHHc-CCCCceEEEE
Q 009734 67 AWEVLKG-RPRNIDLILT 83 (527)
Q Consensus 67 ALe~L~~-~~~~pDLVLl 83 (527)
+.+.++. .. +|+||.
T Consensus 59 i~~~i~~~g~--idlVIn 74 (112)
T cd00532 59 VDAAIAEKGK--FDVVIN 74 (112)
T ss_pred HHHHHhCCCC--EEEEEE
Confidence 5555554 33 666665
No 317
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.73 E-value=1.2e+02 Score=33.17 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=45.7
Q ss_pred HHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 66 KAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.++++. . .|+|++|..-+. ..-++++++|+.. .|+++|| +..-...+.+..++++||+...+
T Consensus 157 ~v~~lv~a-G--vDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 157 RVEELVKA-H--VDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHhc-C--CCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEEE
Confidence 44444443 3 899999998874 5566888888764 3677754 45556788899999999987653
No 318
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=42.66 E-value=38 Score=38.22 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=47.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEEeC--CCCCCCH--HHHHHHHHhccc
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG---LKAWEVLKGRPRNIDLILTEV--DLPSISG--FALLTLVMEHEI 104 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg---~eALe~L~~~~~~pDLVLlDl--~MP~mDG--lelL~~Lr~~~~ 104 (527)
++|||||....+-..|.++|+..|+++..+.+- ...++.+... .||.||+-= .-|...+ .++++.+.
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~--~~~~IIlSpGPg~p~d~~~~~~i~~~~~---- 75 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATM--SNPVLMLSPGPGVPSEAGCMPELLTRLR---- 75 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhc--CcCEEEEcCCCCChhhCCCCHHHHHHHh----
Confidence 589999999999999999999999887765432 2224444332 266777632 2232222 23333331
Q ss_pred CCCCeEEEEe
Q 009734 105 CKNIPVIMMS 114 (527)
Q Consensus 105 ~~~iPVIilS 114 (527)
..+||+-+.
T Consensus 76 -~~iPILGIC 84 (531)
T PRK09522 76 -GKLPIIGIC 84 (531)
T ss_pred -cCCCEEEEc
Confidence 367888665
No 319
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.65 E-value=2.1e+02 Score=29.97 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=61.3
Q ss_pred CEEEEE--ecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHcCCCCceEEEEeCCCCCC
Q 009734 32 LRVLLV--EADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEV----------------LKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 32 lrVLLV--DDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~----------------L~~~~~~pDLVLlDl~MP~m 90 (527)
.+|.|| .+.+. ....|..+|+..|+++....+..+.+.. .......+|+||+ -|.
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGG 77 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGG 77 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeC
Confidence 356776 23332 3455666777889988765433222110 0000112677776 277
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|| .+|+..+... ..++||+-+. .|-.+||.- +..+++...|..+++..
T Consensus 78 DG-TlL~aar~~~-~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 78 DG-TVLSAARQLA-PCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cH-HHHHHHHHhc-CCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 88 4566665432 2478988664 366778876 57889999999887654
No 320
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.62 E-value=1.4e+02 Score=29.51 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCCce-EEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-CCCEEEe
Q 009734 66 KAWEVLKGRPRNID-LILTEVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-GAADYLV 135 (527)
Q Consensus 66 eALe~L~~~~~~pD-LVLlDl~----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~-GA~DyL~ 135 (527)
+..+.+.... +| +++.++. +++. .+++++++.+. .++|||+.-+..+.+.+.++++. |++..++
T Consensus 153 ~~~~~l~~~G--~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEELG--AGEILLTSMDRDGTKKGY-DLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHCC--CCEEEEeccCCCCCCCCC-CHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 3334454443 67 5554543 2332 37888888764 37899998888899999999997 8987765
No 321
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.59 E-value=91 Score=31.63 Aligned_cols=77 Identities=9% Similarity=0.214 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHH
Q 009734 41 DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~ 120 (527)
...-..|.+..++.|+......-..++++.|.+ +++-++=+--.++.-+.+|+.+.+. +.|||+=|+....+
T Consensus 55 ~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlSTG~stl~ 126 (241)
T PF03102_consen 55 EEQHKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAKT----GKPVILSTGMSTLE 126 (241)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE-TT--HH
T ss_pred HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHHh----CCcEEEECCCCCHH
Confidence 344556777888899988887777888888864 4555555566678889999999763 67999999887666
Q ss_pred HHHHH
Q 009734 121 TVYKC 125 (527)
Q Consensus 121 ~~~~a 125 (527)
.+.+|
T Consensus 127 EI~~A 131 (241)
T PF03102_consen 127 EIERA 131 (241)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 322
>PRK04457 spermidine synthase; Provisional
Probab=42.40 E-value=2.7e+02 Score=28.19 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=46.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC--CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCC-----CCHHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS-----ISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~-----mDGlelL~~Lr~~ 102 (527)
..+|..||=|+.+.+..++.+...+ -++.. ..|+.+.+.... ..||+||+|..-+. +.-.++++.+++.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~---~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~ 166 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHR---HSTDVILVDGFDGEGIIDALCTQPFFDDCRNA 166 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCC---CCCCEEEEeCCCCCCCccccCcHHHHHHHHHh
Confidence 4789999999999999998886432 34433 467777665432 35999999963221 2235777777654
No 323
>PRK01581 speE spermidine synthase; Validated
Probab=42.38 E-value=1.1e+02 Score=33.05 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=44.0
Q ss_pred cCEEEEEecCHHHHHHHHHH--HH---hC---CCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCC------CHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTAL--LR---KS---SYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI------SGFAL 95 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~l--L~---~~---Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~m------DGlel 95 (527)
..+|.+||=|+.+.+..+.. |. +. +-++.. +.|+.+.+... ...||+||+|+.-|.. -..++
T Consensus 174 v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---~~~YDVIIvDl~DP~~~~~~~LyT~EF 250 (374)
T PRK01581 174 VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---SSLYDVIIIDFPDPATELLSTLYTSEL 250 (374)
T ss_pred CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---CCCccEEEEcCCCccccchhhhhHHHH
Confidence 36999999999999888862 21 11 224544 57777766543 2359999999754432 22456
Q ss_pred HHHHHhc
Q 009734 96 LTLVMEH 102 (527)
Q Consensus 96 L~~Lr~~ 102 (527)
++.++..
T Consensus 251 y~~~~~~ 257 (374)
T PRK01581 251 FARIATF 257 (374)
T ss_pred HHHHHHh
Confidence 6666543
No 324
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=42.37 E-value=3.8e+02 Score=27.14 Aligned_cols=65 Identities=14% Similarity=0.274 Sum_probs=37.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC----CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ----DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~----~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~ 151 (527)
.|++|+.. + +..+++.+. ..+|||++... +......+.+..+-.++++.+- +.++|..+|..++
T Consensus 253 ad~~v~~s---g--~~t~~Eam~-----~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 253 ADLVISRA---G--ASTVAELAA-----LGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred cCEEEECC---C--HhHHHHHHH-----hCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 57777632 2 455556553 36788875421 1111222333333467888775 8999999988876
Q ss_pred H
Q 009734 152 R 152 (527)
Q Consensus 152 r 152 (527)
.
T Consensus 323 ~ 323 (350)
T cd03785 323 S 323 (350)
T ss_pred c
Confidence 4
No 325
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=42.34 E-value=1.8e+02 Score=31.93 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=62.9
Q ss_pred hhcCcCEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC----CCCCCHHHHHHH
Q 009734 27 LQRMALRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD----LPSISGFALLTL 98 (527)
Q Consensus 27 ~~~~~lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~----MP~mDGlelL~~ 98 (527)
|++|..+|.|+- =+..--+.|...|...||+++.-. ...|+||+..- .....-...++.
T Consensus 2 ~~~~~~~~~i~tlGC~~N~~dse~~~~~l~~~G~~~~~~~-------------~~ADviiiNTC~v~~~A~~k~~~~i~~ 68 (445)
T PRK14340 2 MPRMGRKFYIHTFGCQMNQADSEIITALLQDEGYVPAASE-------------EDADIVLLNTCAVRENAVERIGHYLQH 68 (445)
T ss_pred CCCCCcEEEEEecCCCCcHHHHHHHHHHHHHCcCEECCCc-------------ccCCEEEEEeeeeeccHHHHHHHHHHH
Confidence 567776777764 466667888889998999776421 12588888652 223333444443
Q ss_pred HHhcc-cCCCCeEEEEecCCCHHHHHHHHH-cCCCEEEeCCCCHHHHHHHHHHH
Q 009734 99 VMEHE-ICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 99 Lr~~~-~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
++... ..+..+| ++++.-....-.+.++ .-..|+++-+-....+...+...
T Consensus 69 ~~~~k~~~~~~~i-vv~GC~a~~~~~e~~~~~p~vd~v~g~~~~~~i~~~~~~~ 121 (445)
T PRK14340 69 LKGAKRRRKGLLV-GVLGCVPQYEREEMFSMFPVIDFLAGPDTYRVLPGLIADA 121 (445)
T ss_pred HHHHhhcCCCCEE-EEeCcccccchHHHHhhCCCCcEEECCCCHHHHHHHHHHH
Confidence 43221 2234444 4554432222223333 34567888888888877777654
No 326
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.27 E-value=3.7e+02 Score=28.98 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCC-------CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDL-------PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~M-------P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+..+.+.+.. .|+|.++... +..+-..+.+.+++ .++|||. ..-.+.+.+.++++.||+..++
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666554 8999997532 22255666666654 2688886 4556788889999999999865
Q ss_pred C
Q 009734 136 K 136 (527)
Q Consensus 136 K 136 (527)
=
T Consensus 215 G 215 (368)
T PRK08649 215 G 215 (368)
T ss_pred C
Confidence 3
No 327
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=42.24 E-value=71 Score=32.22 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=46.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC--C---CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-----HHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS--S---YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-----FALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~--G---y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-----lelL~~L 99 (527)
..+|-+||=|+.+.+..++.|... + -++. ...||..-++...+. .||+||+|+.-|...+ .++.+.+
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~--~yDvIi~D~~dp~~~~~~l~t~ef~~~~ 177 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEE--KYDVIIVDLTDPDGPAPNLFTREFYQLC 177 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST---EEEEEEESSSTTSCGGGGSSHHHHHHH
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCC--cccEEEEeCCCCCCCcccccCHHHHHHH
Confidence 478999999999999999988642 2 1333 466777666544322 5999999998875443 4666666
Q ss_pred Hh
Q 009734 100 ME 101 (527)
Q Consensus 100 r~ 101 (527)
++
T Consensus 178 ~~ 179 (246)
T PF01564_consen 178 KR 179 (246)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 328
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=42.20 E-value=1.1e+02 Score=32.02 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=46.2
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.+.+.++|.+.++.. +|+|++|= |.- -++-+.++... .+ .+|..|+--+.+.+.+....|++-+-+
T Consensus 212 eVEv~sleea~ea~~~g---aDiI~LDn-~s~---e~~~~av~~~~--~~-~~ieaSGGI~~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 212 EVEVENLDELDQALKAG---ADIIMLDN-FTT---EQMREAVKRTN--GR-ALLEVSGNVTLETLREFAETGVDFISV 279 (296)
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEeCC-CCh---HHHHHHHHhhc--CC-eEEEEECCCCHHHHHHHHhcCCCEEEe
Confidence 45588999999999753 79999993 432 22333332221 22 466678888999999999999876543
No 329
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=42.19 E-value=2e+02 Score=28.74 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=61.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+.. ..+.+.++..+. .|.......+..+++.. .|++|+-....+ -|+.+++.+.. .+
T Consensus 219 ~~~l~i~G~g~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~e~-~~~~~~Ea~a~-----G~ 287 (360)
T cd04951 219 DIKLLIAGDGPLR-ATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAWEG-FGLVVAEAMAC-----EL 287 (360)
T ss_pred CeEEEEEcCCCcH-HHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccccC-CChHHHHHHHc-----CC
Confidence 4677888765543 456666665543 34444434445555543 577776443322 36777777642 56
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||+ +....... .+.- .+++..|-+.+++...+..++.
T Consensus 288 PvI~-~~~~~~~e---~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 288 PVVA-TDAGGVRE---VVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred CEEE-ecCCChhh---EecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 8875 33222221 1111 5678899999999999988863
No 330
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=41.99 E-value=1.7e+02 Score=31.50 Aligned_cols=94 Identities=9% Similarity=0.069 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCC----CHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 41 DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI----SGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m----DGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
..--+.|...|...||+.+... ..+|||++...-... ..+++++++++.. ++++||+ ++.
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~~-------------~~aD~v~intctv~~~a~~~~~~~i~~~k~~~--p~~~vvv-gGc 73 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPDE-------------DKADVYIINTCTVTAKADSKARRAIRRARRQN--PTAKIIV-TGC 73 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCCc-------------ccCCEEEEeccccchHHHHHHHHHHHHHHhhC--CCcEEEE-ECC
Confidence 3445678888888898755421 137999998654433 4688888887643 5666655 443
Q ss_pred CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 117 DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
.....-.+++.....|+++-+-....+..++...
T Consensus 74 ~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 74 YAQSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred ccccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 3222223344566788999998888888777654
No 331
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=41.95 E-value=3e+02 Score=29.61 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=67.9
Q ss_pred cCEEEEEecCH-----HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADD-----STRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~-----~~r~~L~~lL~~~Gy--~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+++||-+.. ...+.|+++.+..+. .|.... +-.+..++++. .|++|.=.. ..-=|+-+++.+..
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s~-~E~Fgi~~lEAMa~ 347 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTMW-NEHFGIGVVEYMAA 347 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECCc-cCCcccHHHHHHHc
Confidence 37888887642 355667777776665 355543 45666777753 577776333 33348888888742
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
.+|+|....-.....++.-...|..+||.. +.+++..++..++.
T Consensus 348 -----G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 348 -----GLIPLAHASGGPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -----CCcEEEEcCCCCchheeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 457775443222222221111578889974 89999999998875
No 332
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=41.81 E-value=3.4e+02 Score=27.88 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred cCEEEEEecCH-------HHHHHHHHHHHh-CCC--EEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 31 ALRVLLVEADD-------STRQIVTALLRK-SSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 31 ~lrVLLVDDD~-------~~r~~L~~lL~~-~Gy--~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
..++++|.+-+ .....++.+++. .|. .|... -...+....+.. .|++|+-.... .-|+-+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~----ad~~l~~s~~E-~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSS----ARALLYTPSNE-HFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhh----CeEEEECCCcC-CCCchHHHH
Confidence 57888887532 234566666666 554 34443 344555566653 58888743332 235666666
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+. ..+|||..-..... +.+.-|..+|+..| +.+++...|..++..
T Consensus 320 ma-----~G~PvI~s~~~~~~----e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 MY-----AGKPVIACNSGGPL----ETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HH-----cCCCEEEECCCCcH----HHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 53 36788864322222 33455677888876 999999888887643
No 333
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=41.73 E-value=2.8e+02 Score=25.56 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=45.0
Q ss_pred hhcCcCEEEEEecCHHH---HHHHHHHHHhCCCEEEEEC---CHHHH----HHHHHcCCCCceEEEEeCCCCCC-----C
Q 009734 27 LQRMALRVLLVEADDST---RQIVTALLRKSSYRVTAVP---DGLKA----WEVLKGRPRNIDLILTEVDLPSI-----S 91 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~---r~~L~~lL~~~Gy~V~~a~---dg~eA----Le~L~~~~~~pDLVLlDl~MP~m-----D 91 (527)
+.....+|++|+-|..- .+.+..+.+..|..+.... +..+. +..+... .+|+||+|. |+. +
T Consensus 24 ~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~viiDt--~g~~~~~~~ 99 (173)
T cd03115 24 LKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE--NFDVVIVDT--AGRLQIDEN 99 (173)
T ss_pred HHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC--cccchhhHH
Confidence 33456799999977532 2234444455566555432 33332 2333332 389999987 333 3
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.++.+..+... ..++..++++.+..
T Consensus 100 ~l~~l~~l~~~-~~~~~~~lVv~~~~ 124 (173)
T cd03115 100 LMEELKKIKRV-VKPDEVLLVVDAMT 124 (173)
T ss_pred HHHHHHHHHhh-cCCCeEEEEEECCC
Confidence 44445554432 12444555665543
No 334
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=41.66 E-value=53 Score=34.64 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=42.1
Q ss_pred ccchHHhhhcCcCEEEEEecCH-------HHHHHHHHHHHhCCCEEEE---ECCHHHHH-HHHHcC-CCCceEEEEe
Q 009734 20 IAKWETFLQRMALRVLLVEADD-------STRQIVTALLRKSSYRVTA---VPDGLKAW-EVLKGR-PRNIDLILTE 84 (527)
Q Consensus 20 ~~~~e~~~~~~~lrVLLVDDD~-------~~r~~L~~lL~~~Gy~V~~---a~dg~eAL-e~L~~~-~~~pDLVLlD 84 (527)
.-.|++|.++-..-||+|.|.. .....|..+|++.|+++.. +.|-.+.+ +.++.. ...+|+||+-
T Consensus 146 sg~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITT 222 (312)
T PRK03604 146 SGHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITT 222 (312)
T ss_pred CCcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEEC
Confidence 3479988555445599998843 5566899999999997664 44544444 333322 1237888874
No 335
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.62 E-value=1.8e+02 Score=27.95 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=46.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~--Gy~V~~a~------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
...+|.++-..+.+.+.+.+.|++. |.+++... +..+.++.+.... +|+|++-+.+|...-+
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~--~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG--AGIVFVGLGCPKQEIW 116 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEEcCCcHhHHH
Confidence 3479999999999999999999764 56665441 1233456676655 9999999999998743
No 336
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.61 E-value=3.2e+02 Score=27.10 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=58.8
Q ss_pred HHHHHHhCCC-EEEEECCHHHHHHHHHcCC-CCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 009734 47 VTALLRKSSY-RVTAVPDGLKAWEVLKGRP-RNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (527)
Q Consensus 47 L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~-~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~ 124 (527)
+...|.+.+. -|+...+.++|++.++.-. ..+++| ++.|-.-.+++.++.|++.. ++ .+|-.-...+.+.+..
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~--p~-~~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEV--PE-ALIGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHC--CC-CEEEEeeccCHHHHHH
Confidence 3345555554 4555778888887766322 125544 34454557999999998653 44 3333344456788999
Q ss_pred HHHcCCCEEEeCCCCHHHHHHH
Q 009734 125 CMMRGAADYLVKPVRRNELRNL 146 (527)
Q Consensus 125 al~~GA~DyL~KP~~~eeL~~~ 146 (527)
++++||+ |++-|....++...
T Consensus 83 a~~aGA~-FivsP~~~~~vi~~ 103 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKA 103 (212)
T ss_pred HHHcCCC-EEECCCCCHHHHHH
Confidence 9999995 56566555565543
No 337
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=41.57 E-value=3.4e+02 Score=29.48 Aligned_cols=102 Identities=15% Similarity=0.134 Sum_probs=58.3
Q ss_pred cCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC--CCCCCHHHHHHHHHhc-c-
Q 009734 31 ALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSISGFALLTLVMEH-E- 103 (527)
Q Consensus 31 ~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~mDGlelL~~Lr~~-~- 103 (527)
..+|+||.-|.. ..+.++.+.+..|+.+..+.+..+..+.+... ..+|+||+|.- ++ .+-.. +.++++. .
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~-l~el~~~l~~ 282 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMK-LAEMKELLNA 282 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHH-HHHHHHHHHh
Confidence 468999998763 23335555556788777777777666655543 35999999973 33 23332 2222221 1
Q ss_pred cCCC-CeEEEEecCCCHHHHHHHH----HcCCCEEEe
Q 009734 104 ICKN-IPVIMMSSQDSVSTVYKCM----MRGAADYLV 135 (527)
Q Consensus 104 ~~~~-iPVIilSa~~d~~~~~~al----~~GA~DyL~ 135 (527)
..++ -.++++++......+.+.+ ..|.+.+|.
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~ 319 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIF 319 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1122 3567777766544444333 245666653
No 338
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=41.52 E-value=2.4e+02 Score=27.93 Aligned_cols=106 Identities=14% Similarity=0.145 Sum_probs=62.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh---CCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK---SSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~---~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
...+++|+.+.+... .+...+.. ..-.|.. .-+..+..+.+.. .|++++=....+.-|+.+++.+.
T Consensus 196 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma---- 266 (335)
T cd03802 196 AGIPLKLAGPVSDPD-YFYREIAPELLDGPDIEYLGEVGGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA---- 266 (335)
T ss_pred cCCeEEEEeCCCCHH-HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh----
Confidence 346778887664322 22222221 1223333 3345566666653 57888755445566788887773
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
..+|||..-. .. ..+.+..|..+|+..+ .++|...|..+.
T Consensus 267 -~G~PvI~~~~-~~---~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 267 -CGTPVIAFRR-GA---VPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred -cCCCEEEeCC-CC---chhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 2568885432 22 2245567788999988 888888887763
No 339
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.47 E-value=4.3e+02 Score=27.63 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=47.9
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+.+.++|.+.+... +|+|++| +|.--+--+.+..++.. .++ .+|..|+--+.+.+.+....|++-+-
T Consensus 203 eVEv~tl~ea~eal~~g---aDiI~LD-nm~~e~vk~av~~~~~~--~~~-v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 203 EVEVDSLEQLDEVLAEG---AELVLLD-NFPVWQTQEAVQRRDAR--APT-VLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEcCCHHHHHHHHHcC---CCEEEeC-CCCHHHHHHHHHHHhcc--CCC-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 45588999999999753 7999999 55522222333333322 233 46777888899999999999987664
No 340
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.45 E-value=2.4e+02 Score=27.38 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE--eCCCCHHHHHHHHHHH
Q 009734 80 LILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL--VKPVRRNELRNLWQHV 150 (527)
Q Consensus 80 LVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL--~KP~~~eeL~~~L~~v 150 (527)
|-++|...--...++.++.+++. .++||++...-.+...+..+++.||+..+ ..-+..+.+...++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 44455555444567888888775 37899987655566688899999999997 3334445666555554
No 341
>PRK03612 spermidine synthase; Provisional
Probab=41.37 E-value=1.4e+02 Score=33.47 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=43.8
Q ss_pred CEEEEEecCHHHHHHHHH--HHHhC---C---CEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH------HHHH
Q 009734 32 LRVLLVEADDSTRQIVTA--LLRKS---S---YRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISG------FALL 96 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~--lL~~~---G---y~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG------lelL 96 (527)
.+|.+||=|+.+.+..++ .|... . -++.. ..|+.+.++.. ...||+||+|...|...+ -+++
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---~~~fDvIi~D~~~~~~~~~~~L~t~ef~ 398 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---AEKFDVIIVDLPDPSNPALGKLYSVEFY 398 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---CCCCCEEEEeCCCCCCcchhccchHHHH
Confidence 699999999999999888 44321 1 23433 45666655432 235999999986664322 2566
Q ss_pred HHHHhc
Q 009734 97 TLVMEH 102 (527)
Q Consensus 97 ~~Lr~~ 102 (527)
+.+++.
T Consensus 399 ~~~~~~ 404 (521)
T PRK03612 399 RLLKRR 404 (521)
T ss_pred HHHHHh
Confidence 666543
No 342
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.24 E-value=89 Score=32.03 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=56.0
Q ss_pred EEEEEecCHHHHHHH----HHHHHhCC--CE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHH-HHHHHHhccc
Q 009734 33 RVLLVEADDSTRQIV----TALLRKSS--YR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFA-LLTLVMEHEI 104 (527)
Q Consensus 33 rVLLVDDD~~~r~~L----~~lL~~~G--y~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGle-lL~~Lr~~~~ 104 (527)
.|||-|.+-...-.+ ..+-+..+ .. .+.+.+.+++.+.+... +|+|.+|-.-| +.+. +++.++..
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~g---aD~I~ld~~~~--e~l~~~v~~i~~~-- 225 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG---ADIIMLDNMSP--EELKEAVKLLKGL-- 225 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCH--HHHHHHHHHhccC--
Confidence 466666654433222 22223334 22 34578999999988643 89999996544 2221 22223221
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+++||+ .++--..+.+.+....||+.+-+
T Consensus 226 -~~i~i~-asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 226 -PRVLLE-ASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred -CCeEEE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 356654 45656788899999999987753
No 343
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.20 E-value=1.7e+02 Score=32.31 Aligned_cols=104 Identities=17% Similarity=0.127 Sum_probs=63.3
Q ss_pred CEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCC----CHHHHH---HHHH
Q 009734 32 LRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI----SGFALL---TLVM 100 (527)
Q Consensus 32 lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m----DGlelL---~~Lr 100 (527)
.+|.|+- =+..--+.|...|...||+++. . ....|+||+..--.-- .-+..+ +.++
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-----------~--~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k 90 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTE-----------N--LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALK 90 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-----------C--cccCCEEEEeCcceechHHHHHHHHHHHHHHHH
Confidence 4555553 4666778899999999998765 1 1237999998755432 123333 3343
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~-GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+. .++.+|| +++.-....-.+.+.. +..|+++.+-....+..++..+.
T Consensus 91 ~~--~p~~~iv-vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 91 KK--NPKLIVG-VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred hh--CCCcEEE-EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 32 2555555 4544322222334444 44899999999999988887753
No 344
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=41.12 E-value=4.3e+02 Score=27.45 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=55.0
Q ss_pred cCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLV-DDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.+++++| .++...++.++.+.+..+-.|....-..+..+++.. .|++++. ++ |+.+++.+. ..+|
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~g--g~t~~EA~a-----~g~P 295 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---PG--GITLSEAAA-----LGVP 295 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---CC--chHHHHHHH-----hCCC
Confidence 3566555 445556666666665544233333222233344432 5777763 22 666666663 2578
Q ss_pred EEEEecCC--CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 110 VIMMSSQD--SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa~~--d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|+..... ..+.+......|+ ...+-+.++|...|..++.
T Consensus 296 vI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 296 VILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred EEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 77653222 1222222334454 3345678888888887753
No 345
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.03 E-value=3.3e+02 Score=27.93 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=58.0
Q ss_pred EEEEEecCHHHHHHHH----HHHHhCCC---EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 33 RVLLVEADDSTRQIVT----ALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~----~lL~~~Gy---~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
-|||.|++-.+.-.+. .+=+..+. -.+.+.+.+++.+.++.. +|.|.+|- |. .+.++++.+.. .
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~-~~----~e~l~~~~~~~-~ 224 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDN-MS----PEELREAVALL-K 224 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECC-cC----HHHHHHHHHHc-C
Confidence 5777777655442222 22223342 234588999999888643 79999994 32 46666665432 1
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.++||+++ +--..+.+.+..+.|++.+-
T Consensus 225 ~~ipi~Ai-GGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 225 GRVLLEAS-GGITLENIRAYAETGVDYIS 252 (268)
T ss_pred CCCcEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 25776654 44568888899999998764
No 346
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=41.02 E-value=1.9e+02 Score=29.99 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHH----HHHHHcCCCCceEEEE-eCCCCCC--CHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKA----WEVLKGRPRNIDLILT-EVDLPSI--SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eA----Le~L~~~~~~pDLVLl-Dl~MP~m--DGlelL~~Lr~ 101 (527)
...|++++|-.....++. .+.. .-.+.... +..+. ++.+... -+++++ |..+|.. -|..+++.+++
T Consensus 37 ~aDvI~~edtr~t~~ll~-~~~i-~~~~~~~~~~~~~~~~~~i~~~l~~G---~~ValvSdaGdP~I~dpg~~Lv~~~~~ 111 (287)
T PRK14994 37 AVDLIAAEDTRHTGLLLQ-HFAI-NARLFALHDHNEQQKAETLLAKLQEG---QNIALVSDAGTPLINDPGYHLVRTCRE 111 (287)
T ss_pred hCCEEEEeCCcchHHHHh-hcCC-CCEEEEccCCCHHHHHHHHHHHHHCC---CeEEEEccCCCCceeCCHHHHHHHHHH
Confidence 357888998876644332 2221 22333332 23333 3444433 477777 9999975 48999999976
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
. +++|.++-+-.....+..+.......|+
T Consensus 112 ~----gi~v~vIPGiSA~~aA~a~sG~~~~~f~ 140 (287)
T PRK14994 112 A----GIRVVPLPGPCAAITALSAAGLPSDRFC 140 (287)
T ss_pred C----CCCEEEeCCHHHHHHHHHHcCCCCCcce
Confidence 4 6789988877655555444444334444
No 347
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=40.18 E-value=3.9e+02 Score=29.16 Aligned_cols=61 Identities=28% Similarity=0.428 Sum_probs=38.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC-EEEEE-------------------CCHHHHHHHHHcCCCCceEEEEeCCCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAV-------------------PDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a-------------------~dg~eALe~L~~~~~~pDLVLlDl~MP~m 90 (527)
+||||||..-.....+..++.+...+ .+.++ .|..+.++.++... +|+|+....-|-.
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l~ 81 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPLV 81 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHHH
Confidence 47999999987777666666554212 22222 35555556666554 9999997666655
Q ss_pred CHH
Q 009734 91 SGF 93 (527)
Q Consensus 91 DGl 93 (527)
.|+
T Consensus 82 ~gl 84 (426)
T PRK13789 82 AGF 84 (426)
T ss_pred HHH
Confidence 554
No 348
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=40.11 E-value=2.2e+02 Score=29.50 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=49.9
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeC--------CCCCCCHHHHHHHHHhcccCCCCeEEEEecC-CCHHHHHHHHHcCCC
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEV--------DLPSISGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAA 131 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl--------~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~-~d~~~~~~al~~GA~ 131 (527)
+.+.++|.+.+++.. +|.+-+.+ .-|.+ ++++|++|++.- ++|+++.-+. -+.+.+.++++.|+.
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~~~i~~Gi~ 225 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELT---NIPLVLHGASGIPEEQIKKAIKLGIA 225 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHh---CCCEEEECCCCCCHHHHHHHHHcCCC
Confidence 458889988886444 78877542 12444 499999997753 6899988633 367778899999998
Q ss_pred EEEeC
Q 009734 132 DYLVK 136 (527)
Q Consensus 132 DyL~K 136 (527)
.+=+-
T Consensus 226 kiNv~ 230 (282)
T TIGR01859 226 KINID 230 (282)
T ss_pred EEEEC
Confidence 77543
No 349
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.01 E-value=2.3e+02 Score=32.32 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=34.3
Q ss_pred CEEEEEecCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 32 LRVLLVEADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 32 lrVLLVDDD~~~---r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
.+|.||+-|..- .+.+..+-+..|+.+..+.+..+..+.++... .+|+||+|.
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDT 436 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDT 436 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecC
Confidence 578888876522 23344444556777777776666666665432 489999997
No 350
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=39.95 E-value=2.8e+02 Score=24.89 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=69.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
...+++|+.+.+... .+.......++ .+.... ...+..+++.. .|++|+=... +--|..+++.+..
T Consensus 46 ~~~~l~i~G~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~~---- 115 (172)
T PF00534_consen 46 PNYKLVIVGDGEYKK-ELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMAC---- 115 (172)
T ss_dssp TTEEEEEESHCCHHH-HHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHHT----
T ss_pred CCeEEEEEccccccc-cccccccccccccccccccccccccccccccc----ceeccccccc-ccccccccccccc----
Confidence 446778887444433 34555544443 344333 34566677764 5788875555 5556777777742
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+|||+ +.. ....+.+.-+..+++..|.+.++|...|..++...
T Consensus 116 -g~pvI~-~~~---~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 116 -GCPVIA-SDI---GGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp -T-EEEE-ESS---THHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred -ccceee-ccc---cCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 567774 332 23346677788999999999999999999887654
No 351
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=39.74 E-value=1.8e+02 Score=32.61 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 78 IDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 78 pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.|+|.+|..-.. ..-++++++|++. .++++||+ -.-.+.+.+..+.++||+.+.
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~--~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSN--YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhh--CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 899999984322 1237889999875 35677665 344577888999999998764
No 352
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=39.70 E-value=3.6e+02 Score=29.17 Aligned_cols=62 Identities=6% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE------eC-CCCHHHHHHHHHHHHHhh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL------VK-PVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL------~K-P~~~eeL~~~L~~v~rr~ 154 (527)
++++.++++.-...++|||-..+-.+.+.+.+.+.+||+... .+ |.-...|..-|...+.+.
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~ 307 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEK 307 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHc
Confidence 456666654321137999999999999999999999987653 32 555556666565555544
No 353
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=39.60 E-value=4.2e+02 Score=26.89 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.7
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
|....+..++... ||+|++ .+++.+...+++++++....++++++...
T Consensus 174 d~~~~i~~l~~~~--pd~v~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 221 (333)
T cd06359 174 DFSAELAQIRAAK--PDAVFV--FLPGGMGVNFVKQYRQAGLKKDIPLYSPG 221 (333)
T ss_pred chHHHHHHHHhCC--CCEEEE--EccCccHHHHHHHHHHcCcccCCeeeccC
Confidence 4555666666544 899997 35566788889999887655566665433
No 354
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=39.60 E-value=3.7e+02 Score=27.68 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH----HHHHHHHhcccCCCCeEEEEecCCCH
Q 009734 45 QIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF----ALLTLVMEHEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl----elL~~Lr~~~~~~~iPVIilSa~~d~ 119 (527)
..|...-+..|+++. .+.+.+++-..++.. ..|| -++--++..+ +....|... ...+..+|.-|+-.+.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g---a~iI--GINnRdL~tf~vdl~~t~~la~~-~p~~~~~IsESGI~~~ 219 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLG---AKII--GINNRDLTTLEVDLETTEKLAPL-IPKDVILISESGISTP 219 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCC---CCEE--EEeCCCcchheecHHHHHHHHhh-CCCCcEEEecCCCCCH
Confidence 344445567899865 499999988888732 3444 3444443333 334444332 1234566666788899
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009734 120 STVYKCMMRGAADYLVK 136 (527)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (527)
+.+.+....||+.||+-
T Consensus 220 ~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 220 EDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 99999999999999964
No 355
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.56 E-value=1.2e+02 Score=29.25 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVPD---G---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~d---g---~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.....+...+++.||.+..... . .++++.+.... +|.||+....+. . ..++++.. .++|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--~dgiii~~~~~~--~-~~~~~~~~----~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARR--TDGVILVTPELT--S-AQRAALRR----TGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcC--CCEEEEecCCCC--h-HHHHHHhc----CCCCEEEEec
Confidence 3445566667888998776432 2 24555565544 898877544433 2 34566543 3689998854
No 356
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=39.30 E-value=3.1e+02 Score=30.24 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=46.7
Q ss_pred cCcCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEeCC--CC-CCCHHHH
Q 009734 29 RMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEVD--LP-SISGFAL 95 (527)
Q Consensus 29 ~~~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~---dg~----eALe~L~~~~~~pDLVLlDl~--MP-~mDGlel 95 (527)
+...+|+||+-|. ...+.+..+-+..|..+..+. ++. ++++.+... .+|+||+|.. ++ +...++.
T Consensus 126 ~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~e 203 (428)
T TIGR00959 126 KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEE 203 (428)
T ss_pred hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHH
Confidence 3457999999884 234445555556666655543 332 344444443 3899999972 22 1224555
Q ss_pred HHHHHhcccCCCCeEEEEecCC
Q 009734 96 LTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa~~ 117 (527)
+..+... ..++-.++++.+..
T Consensus 204 L~~i~~~-~~p~e~lLVvda~t 224 (428)
T TIGR00959 204 LAAIKEI-LNPDEILLVVDAMT 224 (428)
T ss_pred HHHHHHh-hCCceEEEEEeccc
Confidence 5555442 22444455555543
No 357
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=39.30 E-value=1.7e+02 Score=28.08 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
+...+.+.++..||.+.... +.. ++++.+... .+|.||+....+. ..++++.+.+ .++|+|++..
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii~~~~~~--~~~~~~~~~~----~~ipvV~~~~ 87 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQ--RVDGLILTVADAA--TSPALDLLDA----ERVPYVLAYN 87 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCC--chHHHHHHhh----CCCCEEEEec
Confidence 34456666778899877653 223 344444443 3899988543332 2345666644 3689988754
No 358
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=39.06 E-value=4.2e+02 Score=27.03 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCEEEE---EC------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 43 TRQIVTALLRKSSYRVTA---VP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~---a~------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
..+.+...|++.|.+|+. .. +....+..++... +|+||+... ..+...+++++++...
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~--~dvvi~~~~--~~~~~~~~~~a~~~g~ 217 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKD--SRVIVVHFS--PDLARRVFCEAYKLGM 217 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCC--CeEEEEECC--hHHHHHHHHHHHHcCC
Confidence 345667777777887654 22 3445555665443 899997653 4478888888877654
No 359
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.04 E-value=1.8e+02 Score=28.93 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=51.0
Q ss_pred HHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhccc--CCCCeEEEEe
Q 009734 47 VTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEI--CKNIPVIMMS 114 (527)
Q Consensus 47 L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~--~~~iPVIilS 114 (527)
+-..+++.|..+..+ .+..+.++.+-. ..|.|++=-.-|+..| ++-++++++... ..++||.+.-
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdG 174 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDG 174 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEEC
Confidence 445556777765543 244444443332 2687777456677666 344555554321 1236666544
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 009734 115 SQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~ 135 (527)
+ -..+.+..+.++||+.++.
T Consensus 175 G-I~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 175 G-VKVDNIREIAEAGADMFVA 194 (220)
T ss_pred C-CCHHHHHHHHHcCCCEEEE
Confidence 4 4588999999999998854
No 360
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.96 E-value=5.1e+02 Score=27.87 Aligned_cols=102 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEe------CCCCCCCH-----
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTE------VDLPSISG----- 92 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlD------l~MP~mDG----- 92 (527)
...+++|| ....+.+.++.+=+.+ +..|+. +.+++.|.+++... .|.|.+- ..-...+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG---AD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSG---ADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC---CCEEEEcccCCCcccCceeCCCCcCH
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+..+........+|||+-.+-.....+.+|+.+||+-.+.
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVML 240 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEE
No 361
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.94 E-value=3.7e+02 Score=27.82 Aligned_cols=105 Identities=16% Similarity=0.212 Sum_probs=59.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKS-SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.+++++-+++..++.+.+.+... |+.+..... +...++.. .|++|+. +|.-.++.+ . ..+|+
T Consensus 221 ~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~----aDl~v~~------sG~~~lEa~-a----~G~Pv 283 (380)
T PRK00025 221 LRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG--QKREAMAA----ADAALAA------SGTVTLELA-L----LKVPM 283 (380)
T ss_pred eEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc--cHHHHHHh----CCEEEEC------ccHHHHHHH-H----hCCCE
Confidence 56677655555566666666665 555444331 33344432 5888883 377776443 2 36788
Q ss_pred EEEecCCCHH-HH------------HHHHHcC--CCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 111 IMMSSQDSVS-TV------------YKCMMRG--AADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 111 IilSa~~d~~-~~------------~~al~~G--A~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|++-...... .. .+.+..+ +..++.+..+.++|...+..++..
T Consensus 284 I~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 284 VVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred EEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC
Confidence 8763322111 11 1111111 455777889999999888888653
No 362
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=38.79 E-value=1.7e+02 Score=31.34 Aligned_cols=64 Identities=16% Similarity=0.069 Sum_probs=44.7
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV---------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a---------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.++|||-|... ..+.+...|+..|+.+..+ ++..++.+.++... +|+|| -+.|.+-+++.+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Ii---aiGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVI---SLGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEE---EeCCchHHHHHHH
Confidence 69999988633 3456788888888765543 24556777777654 99988 3557777777777
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 107 ia 108 (383)
T PRK09860 107 IA 108 (383)
T ss_pred HH
Confidence 64
No 363
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=38.76 E-value=3.4e+02 Score=26.19 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHHhCCCEEEE-E---C----CHHHHHHHHHcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccC
Q 009734 39 ADDSTRQIVTALLRKSSYRVTA-V---P----DGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEIC 105 (527)
Q Consensus 39 DD~~~r~~L~~lL~~~Gy~V~~-a---~----dg~eALe~L~~~~~~pDLVLlDl~M----P-~mDGlelL~~Lr~~~~~ 105 (527)
+-....+.++.+-+..++.+.. + . +..+.++.+.... .|.|.+.-.. + +.-.++.++++++.
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G--vd~i~v~~~~~~~~~~~~~~~~~~~~i~~~--- 181 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAG--ASALTVHGRTREQRYSGPADWDYIAEIKEA--- 181 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhC--CCEEEECCCCHHHcCCCCCCHHHHHHHHhC---
Confidence 4444555555555555532221 1 1 2334445555433 6777554321 1 22347888888764
Q ss_pred CCCeEEEEecCCCHHHHHHHHHc-CCCEEE
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMR-GAADYL 134 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~-GA~DyL 134 (527)
.++|||..-+-.+.+.+.+++.. ||+...
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ 211 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcCCCEEE
Confidence 47899988888889999999998 676543
No 364
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=38.61 E-value=89 Score=31.54 Aligned_cols=92 Identities=22% Similarity=0.188 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCC-CCCH-HHHHHHHHhcccCCCCeEEEEec
Q 009734 41 DSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-SISG-FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP-~mDG-lelL~~Lr~~~~~~~iPVIilSa 115 (527)
..=..++..+|+..||+|+-.. ..++.++..++.. ||+|-+-.-|- -|-+ .+++++|++.... -||+++.+
T Consensus 118 dIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k--~d~v~~SalMTttm~~~~~viE~L~eeGiR--d~v~v~vG 193 (227)
T COG5012 118 DIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELK--PDLVSMSALMTTTMIGMKDVIELLKEEGIR--DKVIVMVG 193 (227)
T ss_pred HHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHHHHcC--CcEEechHHHHHHHHHHHHHHHHHHHcCCc--cCeEEeec
Confidence 3445567788899999988642 5667778777765 99998876664 2333 4677788777653 36666643
Q ss_pred CCCHHHHHHHHHcCCCEEEeCC
Q 009734 116 QDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~KP 137 (527)
-. +-...-+-+.||+.|-.-+
T Consensus 194 GA-pvtq~~a~~iGAD~~~~dA 214 (227)
T COG5012 194 GA-PVTQDWADKIGADAYAEDA 214 (227)
T ss_pred Cc-cccHHHHHHhCCCccCcCH
Confidence 22 1222345568888886443
No 365
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=38.55 E-value=6.1e+02 Score=29.21 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=65.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++||-|-+ .+..++.+.+..|. .|.....-.+...++.. .|+.++=-. -+.-|+-+++.+. ..+
T Consensus 429 dirLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS~-~EGfp~vlLEAMA-----~Gl 497 (578)
T PRK15490 429 ATRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFSR-YEGLPNVLIEAQM-----VGV 497 (578)
T ss_pred CeEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEccc-ccCccHHHHHHHH-----hCC
Confidence 46788888754 35567777776665 35554444444455543 688876332 3445777888774 267
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
|||.... ... .+.+.-|.++|+++|.+...|...+.
T Consensus 498 PVVATdv-GG~---~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 498 PVISTPA-GGS---AECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred CEEEeCC-CCc---HHHcccCCcEEEECCCChhhHHHHHH
Confidence 9995433 322 34556799999999998877766553
No 366
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=38.53 E-value=30 Score=30.73 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred ecCHHHHHHHHHHHHhCCCEEEEEC------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 38 EADDSTRQIVTALLRKSSYRVTAVP------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~V~~a~------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++.......+-..|.+.||+|+.+. .|..+...+.+.+..+|++++ -.|.....++++++.+..... |+
T Consensus 10 ~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv--~~~~~~~~~~v~~~~~~g~~~---v~ 84 (116)
T PF13380_consen 10 DNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVV--CVPPDKVPEIVDEAAALGVKA---VW 84 (116)
T ss_dssp SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE---S-HHHHHHHHHHHHHHT-SE---EE
T ss_pred CCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEE--EcCHHHHHHHHHHHHHcCCCE---EE
Q ss_pred EEecCCCHHHHHHHHHcCC
Q 009734 112 MMSSQDSVSTVYKCMMRGA 130 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA 130 (527)
+.++..+.+....|.+.|.
T Consensus 85 ~~~g~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 85 LQPGAESEELIEAAREAGI 103 (116)
T ss_dssp E-TTS--HHHHHHHHHTT-
T ss_pred EEcchHHHHHHHHHHHcCC
No 367
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=38.46 E-value=3e+02 Score=28.14 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=43.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC-CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~-~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.|++|+=-. .+.-|+.+++.+. ..+|||..... ... ..+.-|..+||..|-+.++|...|..++..
T Consensus 279 ad~~v~~S~-~Eg~~~~~lEAma-----~G~PvI~~~~~~g~~----~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 279 AQLSLLTSQ-SEGFGLSLMEALS-----HGLPVISYDVNYGPS----EIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred hhEEEeccc-ccccChHHHHHHh-----CCCCEEEecCCCCcH----HHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 355554222 2344667777763 36788865322 222 345668899999999999999999988753
No 368
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=38.44 E-value=4.3e+02 Score=28.30 Aligned_cols=91 Identities=19% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC-CC--CCCCHHHHHHHHHhc----cc-CCCCeEEEE
Q 009734 43 TRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV-DL--PSISGFALLTLVMEH----EI-CKNIPVIMM 113 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl-~M--P~mDGlelL~~Lr~~----~~-~~~iPVIil 113 (527)
....|..+-+.+|+++. .+.+.+|+-..+.... .+||=++= ++ ...| ++...+|... .. ..++.+|--
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~g--a~iIGINNRdL~Tf~vD-l~~t~~L~~~~~~~~i~~~~~~~VsE 294 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVHDEREMDRVLGIEG--VELIGINNRSLETFEVD-ISNTKKLLEGERGEQIREKGIIVVGE 294 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCcceEC-HHHHHHHhhhccccccCCCCeEEEEC
Confidence 44455556677899865 5999999988886412 56665532 22 2233 4444555431 11 123444545
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (527)
|+-.+.+.+..+..+|++.+|+-
T Consensus 295 SGI~t~~Dv~~l~~~GadAvLVG 317 (338)
T PLN02460 295 SGLFTPDDVAYVQNAGVKAVLVG 317 (338)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEC
Confidence 67778999999999999999864
No 369
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.39 E-value=1.3e+02 Score=29.87 Aligned_cols=69 Identities=26% Similarity=0.303 Sum_probs=50.2
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC-CCH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-ISG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~-mDG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.... --.+|++|+.--| +.| +++++++++.. ++|||+--+-.+.+.+.++...|+++.++
T Consensus 148 ~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 4667777666543 2469999996554 333 57788887653 78999988888999999999999988875
No 370
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=38.26 E-value=1.2e+02 Score=31.33 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELR 144 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~ 144 (527)
+-+++++.+|+.. ..+|+|+|+-+. -.....+|.+.|++++|+--+..++-.
T Consensus 80 ~~lel~~~~r~~~--~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 80 DTLELVEEIRAKG--VKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHHhcC--CCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHH
Confidence 4567778887543 689999999665 244577899999999999866665544
No 371
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.25 E-value=4.3e+02 Score=29.89 Aligned_cols=111 Identities=19% Similarity=0.276 Sum_probs=64.9
Q ss_pred ccchHHhhhcCcCEEEEE--ecCHHHHHHH---HHHHH-hCCCEEEEECCHHHHHH----------------HHHcCCCC
Q 009734 20 IAKWETFLQRMALRVLLV--EADDSTRQIV---TALLR-KSSYRVTAVPDGLKAWE----------------VLKGRPRN 77 (527)
Q Consensus 20 ~~~~e~~~~~~~lrVLLV--DDD~~~r~~L---~~lL~-~~Gy~V~~a~dg~eALe----------------~L~~~~~~ 77 (527)
...|+.- +.+|+|| -+.+...+.+ ..+|+ ..|++|.........+. .+......
T Consensus 187 ~l~w~~~----p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 262 (508)
T PLN02935 187 SLKWESD----PQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTK 262 (508)
T ss_pred EeeecCC----CCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccC
Confidence 4567653 4678888 3445555444 44455 46788776443222210 00000113
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|+||+ -|.||. +|+..+... ...+||+-+ ..|-.+|| -++..+++...|..+++..
T Consensus 263 ~DlVIs----iGGDGT-lL~Aar~~~-~~~iPILGI-------------N~G~LGFL-t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 263 VDLVIT----LGGDGT-VLWAASMFK-GPVPPVVPF-------------SMGSLGFM-TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhc-cCCCcEEEE-------------eCCCccee-cccCHHHHHHHHHHHHcCC
Confidence 677776 377883 455554332 246788754 36778887 5689999999999987653
No 372
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=38.21 E-value=1.6e+02 Score=31.23 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHh
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVME 101 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~ 101 (527)
|..|.++..-..|+| +.-+-...+..+-+..|-+.....|+|++|.--..... ++.++.|++
T Consensus 71 ~~sfvrk~k~~~L~v-----------------~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 71 RIPFIKDMQERGLFA-----------------SISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred HHHHHHhccccccEE-----------------EEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.- ..|+|+.-.....+.+..++++||+.+.+
T Consensus 134 ~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 134 HL---PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred hC---CCCEEEEecCCCHHHHHHHHHcCcCEEEE
No 373
>PRK14967 putative methyltransferase; Provisional
Probab=38.21 E-value=3.7e+02 Score=26.17 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHHcCCCCceEEEEeC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
.+|..||-++......+..++..+..+... .+..+ .+... .||+|+++.
T Consensus 60 ~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~--~fD~Vi~np 109 (223)
T PRK14967 60 GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFR--PFDVVVSNP 109 (223)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCC--CeeEEEECC
Confidence 489999999998888888887777654432 34333 23332 499999973
No 374
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.10 E-value=3.3e+02 Score=28.01 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=34.9
Q ss_pred cCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHH---HHHHHHcCCCCceEEEEeC
Q 009734 31 ALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLK---AWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 31 ~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~e---ALe~L~~~~~~pDLVLlDl 85 (527)
..+|.+|+-|.. ....++...+..|+.+..+.+..+ +++.+... ..+|+||+|.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt 162 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDT 162 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 468888887654 344455555667888877766544 44444332 2489999996
No 375
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=38.10 E-value=2.4e+02 Score=29.96 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCEEEE--EC-----CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 45 QIVTALLRKSSYRVTA--VP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a~-----dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
+.+.+.++..|.+|+. +. +....|..++.. .+|.||+|..- .....+++++++...
T Consensus 141 q~l~~~~~~~g~~v~~~~~~~~~~~d~~~~L~~ik~~--~~~~iil~~~~--~~~~~il~qa~~~gm 203 (371)
T cd06388 141 QAIMEKAGQNGWQVSAICVENFNDASYRRLLEDLDRR--QEKKFVIDCEI--ERLQNILEQIVSVGK 203 (371)
T ss_pred HHHHHhhHhcCCeeeeEEeccCCcHHHHHHHHHhccc--ccEEEEEECCH--HHHHHHHHHHHhcCc
Confidence 3344444555766553 21 344455555544 38999998644 346788888887654
No 376
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=38.07 E-value=2.4e+02 Score=28.59 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=42.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcC---CCCceEEEEeCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGR---PRNIDLILTEVD 86 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~---~~~pDLVLlDl~ 86 (527)
.-+|.-||-++.....-+..++..|+ .|.. ..++.+.|..+... ...||+||+|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 35899999999999999999999886 3443 56777777766421 135999999986
No 377
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.95 E-value=1.1e+02 Score=30.37 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=50.0
Q ss_pred ECCHHHHHHHHHcCCCCce-EEEEeCCCCC---CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 61 VPDGLKAWEVLKGRPRNID-LILTEVDLPS---ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pD-LVLlDl~MP~---mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..+..+..+.+.... +| |+++|+.--+ ..-++++++|++. ..+||++--+-.+.+.+.+++..|++..++=
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 346667667766543 44 7777776321 1126778888765 3689999888889999999999998776543
No 378
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=37.93 E-value=4.4e+02 Score=26.62 Aligned_cols=93 Identities=11% Similarity=0.144 Sum_probs=52.5
Q ss_pred HHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC---CCHH
Q 009734 45 QIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ---DSVS 120 (527)
Q Consensus 45 ~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~---~d~~ 120 (527)
+.+++.++..+. .++... ..+..+++.. .|++|+. .+ +..+++.+. ..+|+|++.-. ....
T Consensus 222 ~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~----ad~~v~~---~g--~~~l~Ea~~-----~g~Pvv~~~~~~~~~~~~ 286 (348)
T TIGR01133 222 EKVKNVYQELGIEAIVTFI-DENMAAAYAA----ADLVISR---AG--ASTVAELAA-----AGVPAILIPYPYAADDQY 286 (348)
T ss_pred HHHHHHHhhCCceEEecCc-ccCHHHHHHh----CCEEEEC---CC--hhHHHHHHH-----cCCCEEEeeCCCCccchh
Confidence 456666666554 232222 1134445542 5888862 12 455556653 36799876321 1222
Q ss_pred HHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 121 TVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 121 ~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
...+.+..+-.++++.|-+ .++|...+.+++.
T Consensus 287 ~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 287 YNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 2223455566788887754 9999999988774
No 379
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=37.85 E-value=40 Score=32.45 Aligned_cols=75 Identities=13% Similarity=0.238 Sum_probs=44.1
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHcCCCCceEEEEeC-C-CCCCCHHHHHHHHHhcccCCCCeE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDG-LKAWEVLKGRPRNIDLILTEV-D-LPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg-~eALe~L~~~~~~pDLVLlDl-~-MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
|||||....+-..+..+|++.|+.+..+... .+. ..+... .||.|++-= - -|.-++. ....++.. ...+||
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~--~~~~iilsgGp~~~~~~~~-~~~~i~~~--~~~~Pi 75 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDI-DGIEAL--NPTHLVISPGPCTPNEAGI-SLQAIEHF--AGKLPI 75 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCH-HHHhhC--CCCEEEEeCCCCChHHCcc-hHHHHHHh--cCCCCE
Confidence 8999999999999999999999987765422 122 222222 267666532 1 1111222 12333321 246788
Q ss_pred EEEe
Q 009734 111 IMMS 114 (527)
Q Consensus 111 IilS 114 (527)
+-+.
T Consensus 76 LGIC 79 (193)
T PRK08857 76 LGVC 79 (193)
T ss_pred EEEc
Confidence 8665
No 380
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=37.84 E-value=1.9e+02 Score=28.63 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=50.5
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC-CCH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-ISG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~-mDG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+..+.+.... .-+|++|+.--+ +.| +++++++.+. ..+|||+--+-.+.+.+.++...||+..++
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4455555555433 479999997643 233 7888988765 368999888888999999999999998875
No 381
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=37.65 E-value=2.2e+02 Score=29.38 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=33.8
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
++++.++++.- .+++|||...+-.+.+.+.+++.+||+...
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67888887642 247999999999999999999999997654
No 382
>PLN02316 synthase/transferase
Probab=37.62 E-value=4.1e+02 Score=32.74 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=65.5
Q ss_pred cCEEEEEec--CHHHHHHHHHHHHhCCC----EEEEECCHHHHH--HHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 31 ALRVLLVEA--DDSTRQIVTALLRKSSY----RVTAVPDGLKAW--EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDD--D~~~r~~L~~lL~~~Gy----~V~~a~dg~eAL--e~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
..+++||-+ ++.....+..+....+. .|...-...+.+ .++.. .|++|+=- +-.--|+-.++.++.
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa----ADiflmPS-~~EP~GLvqLEAMa~- 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG----ADFILVPS-IFEPCGLTQLTAMRY- 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh----CcEEEeCC-cccCccHHHHHHHHc-
Confidence 478888885 44445666666665432 343322223332 33322 68888753 345557888887743
Q ss_pred ccCCCCeEEEEecCCCH-HHHHHH---------HHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 103 EICKNIPVIMMSSQDSV-STVYKC---------MMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~-~~~~~a---------l~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+|+|+ +..+.. +.+... ...+..+|+..|.+...|..+|.+++..
T Consensus 943 ----GtppVv-s~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~ 998 (1036)
T PLN02316 943 ----GSIPVV-RKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISA 998 (1036)
T ss_pred ----CCCeEE-EcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 334444 444333 333221 1125789999999999999999888753
No 383
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=37.62 E-value=1.2e+02 Score=35.79 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=49.2
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe-C-CCCC-CCHHHHHHHHHhcccC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE-V-DLPS-ISGFALLTLVMEHEIC 105 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD-l-~MP~-mDGlelL~~Lr~~~~~ 105 (527)
....+|||||-...+...|..+|++.|+++..+.... ..+.+... .||.||+- = .-|. .+-.++++++..
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~--~~DgLILsgGPGsp~d~~~~~~I~~~~~---- 586 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDER--RPDLVVLSPGPGRPADFDVAGTIDAALA---- 586 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhhc--CCCEEEEcCCCCCchhcccHHHHHHHHH----
Confidence 3568999999988888999999999999887764331 11222222 38888771 1 1121 122444554432
Q ss_pred CCCeEEEEe
Q 009734 106 KNIPVIMMS 114 (527)
Q Consensus 106 ~~iPVIilS 114 (527)
.++||+-+.
T Consensus 587 ~~iPvLGIC 595 (717)
T TIGR01815 587 RGLPVFGVC 595 (717)
T ss_pred CCCCEEEEC
Confidence 468998665
No 384
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=37.60 E-value=4.3e+02 Score=28.45 Aligned_cols=105 Identities=18% Similarity=0.165 Sum_probs=71.2
Q ss_pred cccchHHhhhcCcCEEEEEecCHHHHHHHHHHHH-hCCCEEE--------EECCHHHHHHHHHcCCCCceEEEEeCCCCC
Q 009734 19 GIAKWETFLQRMALRVLLVEADDSTRQIVTALLR-KSSYRVT--------AVPDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (527)
Q Consensus 19 ~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~-~~Gy~V~--------~a~dg~eALe~L~~~~~~pDLVLlDl~MP~ 89 (527)
...+++...... -.|++.+++...+.....-|. +.|+.++ .+--|.-+++++++.+..||.||+-+...+
T Consensus 109 p~~Kv~a~r~~G-aeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQGTi~lEileq~~~~~d~v~vpvGGGG 187 (347)
T COG1171 109 PKIKVDATRGYG-AEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGG 187 (347)
T ss_pred cHHHHHHHHhcC-CEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeecccHHHHHHHHhccccCCEEEEecCccH
Confidence 344555544333 589999999988888888764 5677543 345677888988877644699999987776
Q ss_pred C-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC
Q 009734 90 I-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG 129 (527)
Q Consensus 90 m-DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~G 129 (527)
+ .|+...-+ .. .|.+.||.+-.... ....+++..|
T Consensus 188 LisGia~~~k--~~--~p~~~vIGVEp~~a-~~~~~Sl~~G 223 (347)
T COG1171 188 LISGIATALK--AL--SPEIKVIGVEPEGA-PSMYASLKAG 223 (347)
T ss_pred HHHHHHHHHH--Hh--CCCCeEEEEeeCCC-hHHHHHHHcC
Confidence 3 45544333 22 36789998876554 4455778888
No 385
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=37.51 E-value=35 Score=35.70 Aligned_cols=66 Identities=23% Similarity=0.382 Sum_probs=42.3
Q ss_pred cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCE-EEE-ECCHHHHHH-HHHcCCCCceEEEEe
Q 009734 16 GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYR-VTA-VPDGLKAWE-VLKGRPRNIDLILTE 84 (527)
Q Consensus 16 ~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~-a~dg~eALe-~L~~~~~~pDLVLlD 84 (527)
+.+..-.-.-.+-.|+.+|+|||=|......+.+..++.||. +.. +-|....+- .+. + .||+.++|
T Consensus 160 GDDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~-~--kFDvfiTD 228 (354)
T COG1568 160 GDDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLK-R--KFDVFITD 228 (354)
T ss_pred cCchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHH-h--hCCeeecC
Confidence 333344445566777888888888888888888888888886 333 334444432 222 1 38888887
No 386
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.33 E-value=4e+02 Score=27.13 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 42 STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
.....++..+++.|++++.. .+....+..++... +|+||+.. ...+...+++++++... ..+++...
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~--~d~vi~~~--~~~~~~~~~~~~~~~g~--~~~~~~~~ 225 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSK--PDLIVISA--LAADGGNLVRQLRELGY--NGLIVGGN 225 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEECC--cchhHHHHHHHHHHcCC--CCceeccc
Confidence 44556777788889887642 35567777776655 89999865 34566788888887654 34555333
Q ss_pred cCCCHH
Q 009734 115 SQDSVS 120 (527)
Q Consensus 115 a~~d~~ 120 (527)
+..+..
T Consensus 226 ~~~~~~ 231 (344)
T cd06348 226 GFNTPN 231 (344)
T ss_pred cccCHH
Confidence 333333
No 387
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=37.15 E-value=2.3e+02 Score=29.46 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=49.6
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADD----STRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.++-.+. ...+.++..|+..|++|+. + .|....+..++... ||+||+ .+.+-++..++++++
T Consensus 135 k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~s~~v~~l~~~~--pDav~~--~~~~~~~~~~~~~~~ 210 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFK--PDVVFN--TLNGDSNVAFFKQLK 210 (359)
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCChHhHHHHHHHHHHhC--CCEEEE--eccCCCHHHHHHHHH
Confidence 4666655443 2445577888888998653 2 24555666666544 999885 345556788999998
Q ss_pred hcccCCC-CeEEEE
Q 009734 101 EHEICKN-IPVIMM 113 (527)
Q Consensus 101 ~~~~~~~-iPVIil 113 (527)
+....+. +|++..
T Consensus 211 ~~G~~~~~~~~~~~ 224 (359)
T TIGR03407 211 NAGITAKDVPVVSF 224 (359)
T ss_pred HcCCCccCCcEEEe
Confidence 8765433 455543
No 388
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.12 E-value=1.5e+02 Score=29.34 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCEEEEECC--HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVPD--GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~d--g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
+...+.+.+++.||.+..+.. ..+.++.+.... +|-||+-.. +.. ...+++++. .++|||++-.
T Consensus 22 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~--~dgiii~~~-~~~--~~~~~~~~~----~~ipvV~~~~ 87 (283)
T cd06279 22 FLAGVAEVLDAAGVNLLLLPASSEDSDSALVVSAL--VDGFIVYGV-PRD--DPLVAALLR----RGLPVVVVDQ 87 (283)
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcC--CCEEEEeCC-CCC--hHHHHHHHH----cCCCEEEEec
Confidence 455567778889999877543 345666665544 897777422 111 245666654 3679998854
No 389
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=37.02 E-value=3.5e+02 Score=29.00 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=50.7
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCC------CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLP------SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP------~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
+.+.++|...++.. .|.|++. +.. +...++.+..|+..- ...+|||+-.+-.....+.+++.+||+..+
T Consensus 229 v~~~~dA~~a~~~G---~d~I~vs-nhGGr~ld~~~~~~~~l~~i~~a~-~~~i~vi~dGGIr~g~Di~kaLalGA~~V~ 303 (351)
T cd04737 229 IQSPEDADVAINAG---ADGIWVS-NHGGRQLDGGPASFDSLPEIAEAV-NHRVPIIFDSGVRRGEHVFKALASGADAVA 303 (351)
T ss_pred CCCHHHHHHHHHcC---CCEEEEe-CCCCccCCCCchHHHHHHHHHHHh-CCCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 56778887766542 6877773 111 223467777876542 246999999999999999999999999876
Q ss_pred eC
Q 009734 135 VK 136 (527)
Q Consensus 135 ~K 136 (527)
+=
T Consensus 304 iG 305 (351)
T cd04737 304 VG 305 (351)
T ss_pred EC
Confidence 43
No 390
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.99 E-value=3.6e+02 Score=27.68 Aligned_cols=78 Identities=13% Similarity=0.050 Sum_probs=47.5
Q ss_pred CEEEEEecCH-H---HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADD-S---TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~-~---~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.||-++. . ..+.+++.|+..|++++.. .+....+..++... +|+|++- +...+...++++++
T Consensus 145 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~--~d~v~~~--~~~~~~~~~~~~~~ 220 (362)
T cd06343 145 AKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAG--ADVVVLA--TTPKFAAQAIRKAA 220 (362)
T ss_pred ceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcC--CCEEEEE--cCcHHHHHHHHHHH
Confidence 4565554444 2 3334555567778875432 24556677776654 9999984 34567888999998
Q ss_pred hcccCCCCeEEEEec
Q 009734 101 EHEICKNIPVIMMSS 115 (527)
Q Consensus 101 ~~~~~~~iPVIilSa 115 (527)
+.... .++|+.+.
T Consensus 221 ~~g~~--~~~~~~~~ 233 (362)
T cd06343 221 ELGWK--PTFLLSSV 233 (362)
T ss_pred HcCCC--ceEEEEec
Confidence 77543 24554443
No 391
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=36.93 E-value=5.1e+02 Score=28.49 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=61.1
Q ss_pred CcCEEEEEec---CHH-HHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC------------C
Q 009734 30 MALRVLLVEA---DDS-TRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------I 90 (527)
Q Consensus 30 ~~lrVLLVDD---D~~-~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------m 90 (527)
....++.||- +.. ..+.++.+=+.. ...|.. +.+.++|..+++.. .|.|.+-+ -|+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~-g~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGI-GPGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECC-CCCcCCccceecCCCc
Confidence 3477888886 332 233333332231 333333 67888888877643 67775432 111 1
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
--+.++..+.+.....++|||.-.+......+.+|+.+||+-.++=
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 1234444443322224689998778888999999999999988765
No 392
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=36.91 E-value=3.9e+02 Score=26.87 Aligned_cols=114 Identities=12% Similarity=0.021 Sum_probs=77.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHcCCCCceEEEE----eCCCCCCCH-HHHHHHHHhcc
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILT----EVDLPSISG-FALLTLVMEHE 103 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy---~V~~a~dg~eALe~L~~~~~~pDLVLl----Dl~MP~mDG-lelL~~Lr~~~ 103 (527)
+.|+-+-++..+...++..=+...+ +...+.+..++.+.+++.. +|.+++ |.++-|.+- ++.+..+++..
T Consensus 84 ~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~g--vd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~ 161 (217)
T COG0269 84 VTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELG--VDQVILHRGRDAQAAGKSWGEDDLEKIKKLS 161 (217)
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhC--CCEEEEEecccHhhcCCCccHHHHHHHHHhh
Confidence 4677777777776666655443322 2344678899999998644 899987 667767765 78888887654
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHH
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQH 149 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~ 149 (527)
...-.|.+++--..+.+..+...|++-|++ +--++.+-...++.
T Consensus 162 --~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~ 210 (217)
T COG0269 162 --DLGAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKE 210 (217)
T ss_pred --ccCceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHH
Confidence 222456678888899999999999888764 44444444444433
No 393
>PRK01362 putative translaldolase; Provisional
Probab=36.78 E-value=2.3e+02 Score=28.22 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEE--E-eCCCCCCCHHHHHHHHHhcccCCC-CeEEEEecCCCHHHH
Q 009734 49 ALLRKSSYRV--TAVPDGLKAWEVLKGRPRNIDLIL--T-EVDLPSISGFALLTLVMEHEICKN-IPVIMMSSQDSVSTV 122 (527)
Q Consensus 49 ~lL~~~Gy~V--~~a~dg~eALe~L~~~~~~pDLVL--l-Dl~MP~mDGlelL~~Lr~~~~~~~-iPVIilSa~~d~~~~ 122 (527)
+.|...|+.+ +.+-+..+|+...+.. .+.|- + -+.-.+.||+++++++.+.-...+ -.-|+..+.-+...+
T Consensus 95 ~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v 171 (214)
T PRK01362 95 KALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHV 171 (214)
T ss_pred HHHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHH
Confidence 3466667754 4467888888877654 33322 2 122247899999998876532112 245555666788899
Q ss_pred HHHHHcCCCEEEeCC
Q 009734 123 YKCMMRGAADYLVKP 137 (527)
Q Consensus 123 ~~al~~GA~DyL~KP 137 (527)
.++..+|++ +++=|
T Consensus 172 ~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 172 LEAALAGAD-IATIP 185 (214)
T ss_pred HHHHHcCCC-EEecC
Confidence 999999998 44444
No 394
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.71 E-value=4.2e+02 Score=27.04 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=48.1
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.++-++.. ....++..++..|++|+.. .+....+..+.... +|+|++.. ..-+...++++++
T Consensus 145 ~~va~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~ 220 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAAD--PDVIIAGF--SGNVGVLFTQQWA 220 (344)
T ss_pred ceEEEEecCchhhhHHHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcC--CCEEEEee--cCchHHHHHHHHH
Confidence 34544444333 3334556667778876542 35566777776654 89999865 4446778888887
Q ss_pred hcccCCCCeEEEEecC
Q 009734 101 EHEICKNIPVIMMSSQ 116 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~ 116 (527)
+... ..+++.++..
T Consensus 221 ~~g~--~~~~~~~~~~ 234 (344)
T cd06345 221 EQKV--PIPTIGISVE 234 (344)
T ss_pred HcCC--CCceEEecCC
Confidence 7653 4566655433
No 395
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=36.45 E-value=4.9e+02 Score=26.69 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=38.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC----CCHH-HHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ----DSVS-TVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~----~d~~-~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
.|++|+.- + +..+++.+. ..+|+|++... .... ......+.| ..+++.|-+ .+.|...|..+
T Consensus 253 ~d~~i~~~---g--~~~~~Ea~~-----~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~l 321 (357)
T PRK00726 253 ADLVICRA---G--ASTVAELAA-----AGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLEL 321 (357)
T ss_pred CCEEEECC---C--HHHHHHHHH-----hCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHH
Confidence 58888632 2 345556553 36789876431 2222 222333445 477777655 89999999988
Q ss_pred HHh
Q 009734 151 WRR 153 (527)
Q Consensus 151 ~rr 153 (527)
+..
T Consensus 322 l~~ 324 (357)
T PRK00726 322 LSD 324 (357)
T ss_pred HcC
Confidence 743
No 396
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=36.16 E-value=3.2e+02 Score=27.67 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=31.2
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
++++++|++.- ..++|||...+-.+.+.+.+++.+||+..
T Consensus 230 ~~~v~~i~~~~-~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARL-QLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 56677776542 12799999999999999999999997654
No 397
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=36.15 E-value=1.7e+02 Score=31.22 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=43.4
Q ss_pred CEEEEEecCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHH
Q 009734 32 LRVLLVEADDSTR-----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 32 lrVLLVDDD~~~r-----~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~ 97 (527)
.|+|||-|..... +.+...|+..|+++..+. +..++++.++... +|+||- +.|..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 5899999876543 568888888887766553 3446667776654 898873 45666666666
Q ss_pred HHH
Q 009734 98 LVM 100 (527)
Q Consensus 98 ~Lr 100 (527)
.+.
T Consensus 102 ~ia 104 (383)
T cd08186 102 SAA 104 (383)
T ss_pred HHH
Confidence 553
No 398
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.11 E-value=2e+02 Score=32.08 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred hHHhhhcCcCEEEEEecCHH-----HHHHHHHHHHhCCC-----------EEEEECCHHHHHHHHHcCCCCceEEEEeC-
Q 009734 23 WETFLQRMALRVLLVEADDS-----TRQIVTALLRKSSY-----------RVTAVPDGLKAWEVLKGRPRNIDLILTEV- 85 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~-----~r~~L~~lL~~~Gy-----------~V~~a~dg~eALe~L~~~~~~pDLVLlDl- 85 (527)
++.|.....-++.|||++.. .+..|...+..... -+....+..+.++.|.... .|+|++|.
T Consensus 171 l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~aG--vd~i~~D~a 248 (479)
T PRK07807 171 FDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEAG--VDVLVVDTA 248 (479)
T ss_pred HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHhC--CCEEEEecc
Q ss_pred CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 86 DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 86 ~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
+=....-++++++|++.. |+++||. ......+.+..++++||+..
T Consensus 249 ~~~~~~~~~~i~~ik~~~--p~~~v~a-gnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 249 HGHQEKMLEALRAVRALD--PGVPIVA-GNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred CCccHHHHHHHHHHHHHC--CCCeEEe-eccCCHHHHHHHHHcCCCEE
No 399
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.95 E-value=2.3e+02 Score=29.64 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=54.5
Q ss_pred CEEEEEec--CH---HHHHHHHHHHHhCCCEEEEECCHHHHH--HHH-HcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 32 LRVLLVEA--DD---STRQIVTALLRKSSYRVTAVPDGLKAW--EVL-KGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 32 lrVLLVDD--D~---~~r~~L~~lL~~~Gy~V~~a~dg~eAL--e~L-~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
.+|+||-. .+ .....+...|++.|+++.......+.. ..+ ......+|+||+= |.||. +++.++...
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~----GGDGT-~l~~~~~~~ 78 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVL----GGDGT-VLAAARHLA 78 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEE----CCcHH-HHHHHHHhc
Confidence 35777732 22 334455666778899877643322211 110 1111237888873 77883 344444322
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHh
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVR-RNELRNLWQHVWRR 153 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~-~eeL~~~L~~v~rr 153 (527)
..++||+.+.. -|-.+||.-... ..+ ...|+++.+.
T Consensus 79 -~~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 79 -PHDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred -cCCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 24789887763 256778885421 222 5566666543
No 400
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.94 E-value=3.7e+02 Score=26.89 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=64.8
Q ss_pred HHhhhcC---cCE-EEEEecCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeCCCCCC------
Q 009734 24 ETFLQRM---ALR-VLLVEADDSTRQIVTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSI------ 90 (527)
Q Consensus 24 e~~~~~~---~lr-VLLVDDD~~~r~~L~~lL~~~Gy~V~~-a--~dg~eALe~L~~~~~~pDLVLlDl~MP~m------ 90 (527)
++|+... ... |++.|-.......+...+++.|..... + .+..+.++.+.... .|.|++=-.+|..
T Consensus 94 ~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCC
Confidence 4554432 334 444454555555677777888876543 2 24455555554422 3444331224422
Q ss_pred --CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 --SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 --DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+.++++++. .++||++=.+-.+.+.+.++.++ |+.+++-
T Consensus 172 ~~~~~~~i~~lr~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 PDDLKELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred ChhHHHHHHHHHhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 234667777664 47899987777778888899988 9999986
No 401
>PF13941 MutL: MutL protein
Probab=35.94 E-value=2.3e+02 Score=31.57 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=81.1
Q ss_pred cchHHhhhc----CcCEEEEEecCHH-HHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH
Q 009734 21 AKWETFLQR----MALRVLLVEADDS-TRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (527)
Q Consensus 21 ~~~e~~~~~----~~lrVLLVDDD~~-~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG 92 (527)
+.|..++-= ..+|+.++-=-+. +.+..+..-...|-.|.. ..-.++-++.|+..+ ||+||+-=.-.+.+.
T Consensus 62 ~~~~~~la~SSAaGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~~--PDiILLaGGtDgG~~ 139 (457)
T PF13941_consen 62 DGYDKVLACSSAAGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREIR--PDIILLAGGTDGGNK 139 (457)
T ss_pred cCceEEEEECCCCCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhccC--CCEEEEeCCccCCch
Confidence 556655332 3578777775443 334444444455665554 344566677777655 999999533333222
Q ss_pred ---HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCCEEEeCCC-------CHHHHHHHHHHHHHhhcc
Q 009734 93 ---FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLVKPV-------RRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 93 ---lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL~KP~-------~~eeL~~~L~~v~rr~~~ 156 (527)
+...+.|.... ..+|||+-....-.+.+.+.+. .|..-|++.-+ +.+-.+..|+.++.++-.
T Consensus 140 ~~il~nA~~La~~~--~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii 212 (457)
T PF13941_consen 140 EVILHNAEMLAEAN--LRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRHII 212 (457)
T ss_pred HHHHHHHHHHHhCC--CCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHh
Confidence 55666676543 4689887766666777778887 66777776644 456667788877766533
No 402
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=35.93 E-value=2.4e+02 Score=30.44 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=53.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH-HHhcccCCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYR-V-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL-VMEHEICKNI 108 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~-V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~-Lr~~~~~~~i 108 (527)
.+|+.+|-++...+.++.-++..+.. + +...|..+.+.. . ..||+|++|- |+. +.+++.. |+... .-
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~Gs-~~~~l~~al~~~~---~~ 151 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FGS-PAPFLDSAIRSVK---RG 151 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CCC-cHHHHHHHHHHhc---CC
Confidence 48999999999999999998877764 3 334455444432 2 2499999985 444 4567666 55432 34
Q ss_pred eEEEEecCCCH
Q 009734 109 PVIMMSSQDSV 119 (527)
Q Consensus 109 PVIilSa~~d~ 119 (527)
.+|.+|+.|-.
T Consensus 152 gilyvSAtD~~ 162 (382)
T PRK04338 152 GLLCVTATDTA 162 (382)
T ss_pred CEEEEEecCch
Confidence 68888877643
No 403
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=35.87 E-value=2e+02 Score=27.71 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCEEEEECC---HH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYRVTAVPD---GL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~d---g~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+.+.+++.||.+....+ .. +.++.+.... +|.||+--.+ .--.+++.+++ .++|+|++-.
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii~~~~---~~~~~~~~l~~----~~iPvv~~~~ 86 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERG--VDGLALIGLD---HSPALLDLLAR----RGVPYVATWN 86 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcC--CCEEEEeCCC---CCHHHHHHHHh----CCCCEEEEcC
Confidence 34566667888998777542 23 3344444433 7877762211 12355556543 3689988743
No 404
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=35.73 E-value=2.8e+02 Score=30.22 Aligned_cols=109 Identities=10% Similarity=0.118 Sum_probs=66.5
Q ss_pred ecCHHHHHHHHHHHHhCCCE----EEEEC-----------------------CHHHHHHHHHcCCCCceEEEEeCCCCCC
Q 009734 38 EADDSTRQIVTALLRKSSYR----VTAVP-----------------------DGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy~----V~~a~-----------------------dg~eALe~L~~~~~~pDLVLlDl~MP~m 90 (527)
+++....+.+++.++..||+ |..+- +..+|+++++.....++++.++=-++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888889877663 32222 3377877665422237888888777765
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecC-CCHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAAD-YLVKPVRRNELRNLWQ 148 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~-~d~~~~~~al~~GA~D-yL~KP~~~eeL~~~L~ 148 (527)
| ++-+.+|++.- ...+||+.=-.. .+...+.+++..|+.+ +++||-...-|..+++
T Consensus 290 D-~eg~~~L~~~~-g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKL-GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhc-CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 5 55566665541 124555421111 3578888888888655 5679887554444443
No 405
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.69 E-value=4.1e+02 Score=27.10 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=60.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHcCCCCceEEEE-eC-CCCC------CCHHHHHHHHHhc
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTA-V-P-DGLKAWEVLKGRPRNIDLILT-EV-DLPS------ISGFALLTLVMEH 102 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~-a-~-dg~eALe~L~~~~~~pDLVLl-Dl-~MP~------mDGlelL~~Lr~~ 102 (527)
|||.|=-....+.+...+++.|+..+. + . +..+=++.+.... .+.|-+ .+ .--| .+..++++++++.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 455554555666677777888886544 3 2 3234444444333 344432 22 1111 2345688888774
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP 137 (527)
.++||++=.+-.+.+.+.+++.. |++.++-.
T Consensus 199 ---~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 ---TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred ---CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 37899987777788888888875 99998763
No 406
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.68 E-value=3.3e+02 Score=27.62 Aligned_cols=85 Identities=13% Similarity=0.184 Sum_probs=54.7
Q ss_pred cCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 39 ADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 39 DD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
+.......+...|.+.|+.+....+.. ......|+||+ -|.||. +|+.++.. ++||+-+.
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~----~~Pilgin---- 69 (256)
T PRK14075 10 EKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV----GTPLVGFK---- 69 (256)
T ss_pred cHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc----CCCEEEEe----
Confidence 334455566777777888777654422 11124788887 277884 45555432 78988665
Q ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 119 VSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 119 ~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.|-.+||. .+..+++...|..+...
T Consensus 70 ---------~G~lGfl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 70 ---------AGRLGFLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred ---------CCCCcccc-ccCHHHHHHHHHHHHcC
Confidence 35567776 58888998888887654
No 407
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.62 E-value=71 Score=30.90 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=34.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|+|+|||--.-....+...|++.|+++..+.+..+ +. .+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~~----~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----IL----AADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----hC----CCCEEEE
Confidence 58999997777788888899999999999987643 22 2687775
No 408
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=35.56 E-value=4.4e+02 Score=27.02 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred CEEEEEec---CHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 32 LRVLLVEA---DDSTRQIVTALLRKSSY---RVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 32 lrVLLVDD---D~~~r~~L~~lL~~~Gy---~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
.+++|+-+ .+...+.++..+...+. .|... -+..+..+++.. .|++|+=.. .+.-|+-+++.+.
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a-- 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA-- 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--
Confidence 45555532 34445556666655443 23332 245666666643 688776332 2344677777663
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCH------HHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR------NELRNLWQHVWR 152 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~------eeL~~~L~~v~r 152 (527)
..+|||+. .... ..+.+..|..+++.+|-+. ++|...|..++.
T Consensus 303 ---~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 ---CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred ---cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 36788863 3332 3345567888999999888 888888887764
No 409
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=35.56 E-value=1.5e+02 Score=29.53 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=42.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcC--CCCceEEEEeCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGR--PRNIDLILTEVD 86 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~--~~~pDLVLlDl~ 86 (527)
.-+|.-||-++......+..++..|+. +.. ..+..+.+..+... ...||+||+|..
T Consensus 93 ~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 93 DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 359999999999999999999998873 433 56777777766422 235999999964
No 410
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=35.41 E-value=1.6e+02 Score=32.51 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+..+++. . +|+|.+|..-.. ...++.+++|++. ++++|||+ ..-.+.+.+..++++||+.+.
T Consensus 226 ~~r~~~L~~a-G--~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 226 KERAEALVKA-G--VDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHHh-C--CCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 3455555543 3 899999986543 3457778888764 26788886 445678889999999997773
No 411
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.32 E-value=3.2e+02 Score=28.08 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=50.7
Q ss_pred CEEEEE-ecCHHHHH---HHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHH
Q 009734 32 LRVLLV-EADDSTRQ---IVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLV 99 (527)
Q Consensus 32 lrVLLV-DDD~~~r~---~L~~lL~~~Gy~V~~-------a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~L 99 (527)
.+|-+| .|.+.-+. .++..|++.|++++. ..|....+..++... +|+|++-. .+- +...+++++
T Consensus 139 ~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~--~d~v~~~~--~~~~~~~~~~~~~ 214 (347)
T cd06336 139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEK--PDVIFLGG--PSPAPAALVIKQA 214 (347)
T ss_pred ceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcC--CCEEEEcC--CCchHHHHHHHHH
Confidence 344444 44443333 345566778887753 246777778777654 89998754 344 688999999
Q ss_pred HhcccCCCCeEEEEecCCC
Q 009734 100 MEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d 118 (527)
++... ..+++.++....
T Consensus 215 ~~~g~--~~~~~~~~~~~~ 231 (347)
T cd06336 215 RELGF--KGGFLSCTGDKY 231 (347)
T ss_pred HHcCC--CccEEeccCCCc
Confidence 87754 446776665443
No 412
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=35.28 E-value=2.6e+02 Score=28.44 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=49.5
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADD----STRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.||-++. .....++..|+..|++|+. . .|....+..++... ||+|++.. ...+...+++.++
T Consensus 133 ~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~--pd~v~~~~--~~~~~~~~~~~~~ 208 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASG--ADAVLSTL--VGQDAVAFNRQFA 208 (333)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcC--CCEEEEeC--CCCchHHHHHHHH
Confidence 4666665443 3345677788888988753 2 24455666676654 99999864 3345678899998
Q ss_pred hcccCCCCeEEEEec
Q 009734 101 EHEICKNIPVIMMSS 115 (527)
Q Consensus 101 ~~~~~~~iPVIilSa 115 (527)
+.... .+++..+.
T Consensus 209 ~~G~~--~~~~~~~~ 221 (333)
T cd06358 209 AAGLR--DRILRLSP 221 (333)
T ss_pred HcCCC--ccCceeec
Confidence 76543 35554443
No 413
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.18 E-value=5e+02 Score=26.38 Aligned_cols=85 Identities=20% Similarity=0.097 Sum_probs=53.1
Q ss_pred CEEEEE-ecCHH---HHHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLV-EADDS---TRQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLV-DDD~~---~r~~L~~lL~~~Gy~V~~-------a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.|+ .|.+. ....++..|+..|..++. ..+....+..+.... +|+||+-. .+.+...++++++
T Consensus 136 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~ 211 (340)
T cd06349 136 KKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDAN--PDAIILIS--YYNDGAPIARQAR 211 (340)
T ss_pred cEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcC--CCEEEEcc--ccchHHHHHHHHH
Confidence 355444 44443 345566677778887763 135667777776554 89999854 3456788889887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~ 122 (527)
+.. .+++++..+...+...+
T Consensus 212 ~~g--~~~~~~~~~~~~~~~~~ 231 (340)
T cd06349 212 AVG--LDIPVVASSSVYSPKFI 231 (340)
T ss_pred HcC--CCCcEEccCCcCCHHHH
Confidence 765 35677765544444433
No 414
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=34.86 E-value=1.9e+02 Score=30.38 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred ceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 78 IDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 78 pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+|+|.+|..... ..-++++++|++.. +++|||+ ....+.+.+..+.++||+...+
T Consensus 107 v~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 107 VDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 899999985432 23477888887653 4577775 4446788899999999987764
No 415
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=34.72 E-value=2e+02 Score=30.25 Aligned_cols=76 Identities=11% Similarity=0.148 Sum_probs=49.6
Q ss_pred cCEEEEEecCHHH---HHHHHHHHHhCCCEEEE--E------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 31 ALRVLLVEADDST---RQIVTALLRKSSYRVTA--V------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~---r~~L~~lL~~~Gy~V~~--a------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
..|+|||-|.... .+.+...|+..|..+.. + .+..++++.++... +|+|| -+.|.+-+++.+.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGS~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVI---GIGGGKTLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEE---EecCchhhHHHHHH
Confidence 4689999876543 34455566666665421 2 24556667776644 89887 46788888888887
Q ss_pred HhcccCCCCeEEEEe
Q 009734 100 MEHEICKNIPVIMMS 114 (527)
Q Consensus 100 r~~~~~~~iPVIilS 114 (527)
... ..+|+|.+-
T Consensus 97 a~~---~~~P~iaIP 108 (351)
T cd08170 97 ADY---LGAPVVIVP 108 (351)
T ss_pred HHH---cCCCEEEeC
Confidence 543 367888763
No 416
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=34.71 E-value=3.1e+02 Score=29.20 Aligned_cols=64 Identities=14% Similarity=0.077 Sum_probs=42.8
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~----r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.|||||-|.... .+.+...|+..|+++..+. ...++++.+++.. +|+|| -+.|.+-+++.+.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~d~II---aiGGGS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENG--CDAIL---AVGGGSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCCccHHHHHHH
Confidence 599999886543 3456677877787766542 3457777777654 89887 3456666776665
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 102 ia 103 (374)
T cd08189 102 IA 103 (374)
T ss_pred HH
Confidence 53
No 417
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=34.50 E-value=1.5e+02 Score=31.92 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=53.6
Q ss_pred hhcCc-CEEEEEecCHHHH----HHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHH
Q 009734 27 LQRMA-LRVLLVEADDSTR----QIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFA 94 (527)
Q Consensus 27 ~~~~~-lrVLLVDDD~~~r----~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGle 94 (527)
+.+.. .|+.+|-.|-..- +.++.+|+..|-+|+. + ++....++.++... ||+||.- +-|.+-..
T Consensus 129 ~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I~~~~--Pd~V~st--lvG~s~~a 204 (363)
T PF13433_consen 129 LENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEIKAAK--PDFVFST--LVGDSNVA 204 (363)
T ss_dssp HHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHHHHHT---SEEEEE----TTCHHH
T ss_pred HhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHhhC--CCEEEEe--CcCCcHHH
Confidence 34445 8999999886554 4566667777877653 2 35555666666655 9999984 56788899
Q ss_pred HHHHHHhcccCCC-CeEEEEe
Q 009734 95 LLTLVMEHEICKN-IPVIMMS 114 (527)
Q Consensus 95 lL~~Lr~~~~~~~-iPVIilS 114 (527)
+.+++++....+. +||+-++
T Consensus 205 F~r~~~~aG~~~~~~Pi~S~~ 225 (363)
T PF13433_consen 205 FYRAYAAAGLDPERIPIASLS 225 (363)
T ss_dssp HHHHHHHHH-SSS---EEESS
T ss_pred HHHHHHHcCCCcccCeEEEEe
Confidence 9999998766654 7777544
No 418
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=34.44 E-value=2.9e+02 Score=29.47 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~----r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.|+|||-|.... ...+...|+..|.++..+. ...++++.++... +|+|| -..|.+-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFII---SIGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEE---EeCCcHHHHHHHH
Confidence 589999886543 3467788887787765543 2456667776644 89988 3556677777776
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 104 ia 105 (377)
T cd08176 104 IG 105 (377)
T ss_pred HH
Confidence 64
No 419
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.42 E-value=2.2e+02 Score=31.17 Aligned_cols=102 Identities=18% Similarity=0.184 Sum_probs=63.5
Q ss_pred hhcCcCEEEEEec-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeC-CCCCCCHH--HHHHHHH
Q 009734 27 LQRMALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEV-DLPSISGF--ALLTLVM 100 (527)
Q Consensus 27 ~~~~~lrVLLVDD-D~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl-~MP~mDGl--elL~~Lr 100 (527)
+.+..-+||+.+| -.-.+..+..+|++.|++|..+. +..+.++.+.. .+.++|+++- .-|-|.-. ..+.++.
T Consensus 98 ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A 175 (396)
T COG0626 98 LLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLA 175 (396)
T ss_pred hcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHH
Confidence 3444578999998 56677788889999999998765 55566666653 2379999986 23433322 2222332
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.. .. .++++-..=..-...+.+.+|||-.+
T Consensus 176 ~~---~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 176 KA---YG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred Hh---cC-CEEEEECCcccccccChhhcCCCEEE
Confidence 21 12 44444433334456678888887664
No 420
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=34.07 E-value=3.1e+02 Score=29.59 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=52.5
Q ss_pred ECCHHHHHHHHHcCCCCceEEEE-eCCCCCCC----HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILT-EVDLPSIS----GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLl-Dl~MP~mD----GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+.+.++|...++.. .|.|++ ...-...| .++++..+++.- ++|||+-.+......+.+|+.+||+..++
T Consensus 244 V~~~eda~~a~~~G---~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~---~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 244 IVTAEDAKRCIELG---ADGVILSNHGGRQLDDAIAPIEALAEIVAAT---YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred CCCHHHHHHHHHCC---cCEEEECCCCcCCCcCCccHHHHHHHHHHHh---CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 67888988888743 676654 33333344 388888887542 48999888888999999999999988764
Q ss_pred -CCC
Q 009734 136 -KPV 138 (527)
Q Consensus 136 -KP~ 138 (527)
.|+
T Consensus 318 Gr~~ 321 (361)
T cd04736 318 GRAT 321 (361)
T ss_pred CHHH
Confidence 344
No 421
>PRK09134 short chain dehydrogenase; Provisional
Probab=34.04 E-value=2.3e+02 Score=27.63 Aligned_cols=39 Identities=10% Similarity=0.048 Sum_probs=31.3
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a 61 (527)
|+.++..+..+|||.-....+...+.+.|.+.|+.|+.+
T Consensus 1 ~~~~~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~ 39 (258)
T PRK09134 1 SPPMSMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVH 39 (258)
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 344555667789999999999999999998889988664
No 422
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=33.95 E-value=1.6e+02 Score=28.98 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=37.4
Q ss_pred EEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHH
Q 009734 82 LTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNL 146 (527)
Q Consensus 82 LlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~ 146 (527)
++++.|-.-+.+++++.|++.. ++ -+|-.-.--+.+.+.+|+++||. |++-|.-..++...
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~--p~-~~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~~ 96 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEF--PD-LLVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIEY 96 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHH--TT-SEEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHC--CC-CeeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 4455555557888888887653 55 33444555688999999999995 66666655555533
No 423
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.93 E-value=1.8e+02 Score=29.02 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=48.1
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..++++.++... -.+|++|+.--| +.|++ .|.+. .+++|||.--+-.+.+.+.++...|+++.++
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4456666665442 369999997766 47777 33222 1478999988889999999999999998764
No 424
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.69 E-value=5.4e+02 Score=26.38 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=46.7
Q ss_pred CEEEEEecCHHHH----HHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADDSTR----QIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~~~r----~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-++.... +.++..++..|++|+.. .+....+..++... +|+|++.. ...+...++++++
T Consensus 145 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~i~~l~~~~--~d~v~~~~--~~~~~~~~~~~~~ 220 (347)
T cd06340 145 KTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAAN--PDAILPAS--YTNDAILLVRTMK 220 (347)
T ss_pred ceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHHHHHHHHhcC--CCEEEEcc--cchhHHHHHHHHH
Confidence 4555554443333 44555677788887642 35666677776544 89999753 4456778889988
Q ss_pred hcccCCCCeEEEE
Q 009734 101 EHEICKNIPVIMM 113 (527)
Q Consensus 101 ~~~~~~~iPVIil 113 (527)
+... ..++|+.
T Consensus 221 ~~G~--~~~~~~~ 231 (347)
T cd06340 221 EQRV--EPKAVYS 231 (347)
T ss_pred HcCC--CCcEEEe
Confidence 7654 2344443
No 425
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=33.53 E-value=2.6e+02 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCEEEEECC------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~d------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+.+.++..||.+..+.. ..++++.+.... +|-||+.-..+. -+.+..+.. .++|||++..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii~~~~~~---~~~~~~~~~----~~ipvv~~~~ 86 (268)
T cd01575 18 LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRR--PAGLILTGLEHT---ERTRQLLRA----AGIPVVEIMD 86 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcC--CCEEEEeCCCCC---HHHHHHHHh----cCCCEEEEec
Confidence 34566677888998776432 234556665444 898777533322 344555543 3689998743
No 426
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=33.35 E-value=2.8e+02 Score=30.39 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=50.8
Q ss_pred cCEEEEEecCHHHHHHHH--HHHHhC------CCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH------HHHH
Q 009734 31 ALRVLLVEADDSTRQIVT--ALLRKS------SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG------FALL 96 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~--~lL~~~------Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG------lelL 96 (527)
...|-+||=||.+.+..+ ..|+.. +-+|..+. ++|..+++.....||.||+|+.-|.... .|+-
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY 390 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFY 390 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHH
Confidence 478999999999999988 666653 12566653 4567777766667999999998886543 4666
Q ss_pred HHHHhc
Q 009734 97 TLVMEH 102 (527)
Q Consensus 97 ~~Lr~~ 102 (527)
..++++
T Consensus 391 ~ll~~~ 396 (508)
T COG4262 391 RLLSRH 396 (508)
T ss_pred HHHHHh
Confidence 666544
No 427
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=33.22 E-value=3e+02 Score=28.00 Aligned_cols=78 Identities=9% Similarity=0.056 Sum_probs=48.2
Q ss_pred cCEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 31 ALRVLLVEADDS----TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
..+|.+|-.+.. ....++..|+..|++|+.. .+....+..++... +|+|++- ..+.+...+++++
T Consensus 135 ~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~--~d~v~~~--~~~~~~~~~~~~~ 210 (334)
T cd06327 135 GKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASG--ADVLVLA--NAGADTVNAIKQA 210 (334)
T ss_pred CCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCC--CCEEEEe--ccchhHHHHHHHH
Confidence 346666654443 3444555666778876532 36666667776544 8999884 3455677888888
Q ss_pred HhcccCCCCeEEE
Q 009734 100 MEHEICKNIPVIM 112 (527)
Q Consensus 100 r~~~~~~~iPVIi 112 (527)
++....+.++++.
T Consensus 211 ~~~g~~~~~~~~~ 223 (334)
T cd06327 211 AEFGLTKGQKLAG 223 (334)
T ss_pred HHhCCccCCcEEE
Confidence 8776543455544
No 428
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.15 E-value=3.9e+02 Score=25.36 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=37.4
Q ss_pred CHHHHHHHHHhcccCCCCeE-EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPV-IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQH 149 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPV-IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~ 149 (527)
-|++.+++|++. ...|| +-+..++....+..+.+.|++..++-....++....++.
T Consensus 43 ~~~~~v~~i~~~---~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~ 99 (210)
T TIGR01163 43 FGPPVLEALRKY---TDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQL 99 (210)
T ss_pred cCHHHHHHHHhc---CCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHH
Confidence 578899999863 24565 324444566788888899999987765555555544433
No 429
>PF03830 PTSIIB_sorb: PTS system sorbose subfamily IIB component; InterPro: IPR004720 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families: It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This entry is specific for the IIB components of this family of PTS transporters [].; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 3LFJ_B 1BLE_A 3P3V_B 1NRZ_C 3EYE_A 1VSQ_C 2JZH_A 2JZN_C 2JZO_D.
Probab=33.13 E-value=1.1e+02 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=42.0
Q ss_pred hhccCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHc
Q 009734 13 EMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS---SYRVTAVPDGLKAWEVLKG 73 (527)
Q Consensus 13 ~~~~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~---Gy~V~~a~dg~eALe~L~~ 73 (527)
.+++.+-+..|-+++.-. +|+||||+-..-...+.+|+-. |+.+... +.++|.+.+..
T Consensus 10 RLIHGQV~~~W~~~~~~~--~IiVvdD~~A~D~~~k~~l~ma~P~gvk~~i~-sv~~a~~~l~~ 70 (151)
T PF03830_consen 10 RLIHGQVATAWVKKLNAN--RIIVVDDEVANDPFQKMILKMAAPAGVKLSIF-SVEEAIEKLKK 70 (151)
T ss_dssp TCSCTTHHHHHHHHHTTS--EEEEE-HHHHHSHHHHHHHHHTSHTTSEEEEE--HHHHHHHHCG
T ss_pred ceeeeeeeEEEhhhcccC--EEEEECHHHhcCHHHHHHHHHhhcCCCceEEE-EHHHHHHHHHh
Confidence 356777788999987554 8899999888888888888643 7766654 46777777764
No 430
>PRK10742 putative methyltransferase; Provisional
Probab=33.08 E-value=2.7e+02 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=41.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC------CC----EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS------SY----RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~------Gy----~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~m 90 (527)
.-+|.+||.++.+..+|+.-|+.. +- ++.. ..+..+.+..+ ...||+|++|=+.|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~---~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI---TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC---CCCCcEEEECCCCCCC
Confidence 457999999999999999999874 21 2322 34666555543 2359999999988863
No 431
>PRK06849 hypothetical protein; Provisional
Probab=33.06 E-value=3.4e+02 Score=28.81 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=46.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++|||..........+.+.|.+.|++|+.+......+...... .|-.+. +.-|..+.-+.++.|.+.-...++.+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~---~d~~~~-~p~p~~d~~~~~~~L~~i~~~~~id~ 79 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRA---VDGFYT-IPSPRWDPDAYIQALLSIVQRENIDL 79 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHh---hhheEE-eCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 57999999998888888889998999998876544333222111 222221 22355565434443332211124566
Q ss_pred EEEec
Q 009734 111 IMMSS 115 (527)
Q Consensus 111 IilSa 115 (527)
|+-+.
T Consensus 80 vIP~~ 84 (389)
T PRK06849 80 LIPTC 84 (389)
T ss_pred EEECC
Confidence 66554
No 432
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=33.00 E-value=6.4e+02 Score=27.28 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=43.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCC-------CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDL-------PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~M-------P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
+..+..+.+.+.. .|+|+++-.. ..-+=..+.+.+++ .++|||+ ....+.+.+.++++.||+..+
T Consensus 143 ~~~e~a~~l~eAG--ad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 143 NAREIAPIVVKAG--ADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----LDVPVIA-GGVNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCCCCHHHHHHHHHH----CCCCEEE-eCCCCHHHHHHHHHcCCCEEE
Confidence 4556666666655 8999987321 22333444444433 2689986 556778889999999999987
No 433
>PRK08185 hypothetical protein; Provisional
Probab=32.93 E-value=1.9e+02 Score=30.05 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=48.9
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeC-----C-----CCCCCHHHHHHHHHhcccCCCCeEEEEecCC-CHHHHHHHHHcC
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEV-----D-----LPSISGFALLTLVMEHEICKNIPVIMMSSQD-SVSTVYKCMMRG 129 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl-----~-----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~-d~~~~~~al~~G 129 (527)
.++.++|.+.++... +|.+-+-+ . -|+++ +++++.|++. .++|+++.-+.+ ..+.+.+|...|
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~---~~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINER---VDIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHh---hCCCEEEECCCCCCHHHHHHHHHCC
Confidence 347888888887654 78887722 1 26676 9999999764 379999886653 567788999999
Q ss_pred CCEE
Q 009734 130 AADY 133 (527)
Q Consensus 130 A~Dy 133 (527)
+.-+
T Consensus 222 I~Ki 225 (283)
T PRK08185 222 VGKI 225 (283)
T ss_pred CeEE
Confidence 6443
No 434
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.92 E-value=2.1e+02 Score=27.80 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCC-H-HHHHHHHHhcccCCCCeEEEEe
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSIS-G-FALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mD-G-lelL~~Lr~~~~~~~iPVIilS 114 (527)
+...+...+++.||.+.... +.. +.++.+.... +|-||+.-..+... . ...+..+.. .++|||++-
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~i~~~~~----~~ipvV~i~ 90 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARG--VRGVVFISSLHADTHADHSHYERLAE----RGLPVVLVN 90 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcC--CCEEEEeCCCCCcccchhHHHHHHHh----CCCCEEEEc
Confidence 34556667778899876543 222 4556665544 89877743333221 1 233455533 368888885
Q ss_pred c
Q 009734 115 S 115 (527)
Q Consensus 115 a 115 (527)
.
T Consensus 91 ~ 91 (273)
T cd06292 91 G 91 (273)
T ss_pred C
Confidence 4
No 435
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=32.83 E-value=56 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHhc--ccCCCCeEEEEecCCC
Q 009734 89 SISGFALLTLVMEH--EICKNIPVIMMSSQDS 118 (527)
Q Consensus 89 ~mDGlelL~~Lr~~--~~~~~iPVIilSa~~d 118 (527)
..+|++++++|.+. ....-.||||.+.-+.
T Consensus 3 ~~sGv~vlRel~r~~~~~~~~~PVVFTS~Lg~ 34 (58)
T PF08415_consen 3 SFSGVEVLRELARRGGGRAAVMPVVFTSMLGV 34 (58)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCEEEeCCCCC
Confidence 46899999999876 2234579998776553
No 436
>PRK13561 putative diguanylate cyclase; Provisional
Probab=32.66 E-value=3.9e+02 Score=30.32 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHc-CCCCceEEEEeC----CCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTA--VPDGLKAWEVLKG-RPRNIDLILTEV----DLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~-~~~~pDLVLlDl----~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
....+...|++.|+.+.. +..|-.-+..|.. ...++|.|=+|- .++.. -.+++.|-.....-++.|| ..+
T Consensus 535 ~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~--~~~v~~i~~~a~~l~i~vi-Aeg 611 (651)
T PRK13561 535 AAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPED--DSMVAAIIMLAQSLNLQVI-AEG 611 (651)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCC--HHHHHHHHHHHHHCCCcEE-Eec
Confidence 334455667888987665 5566666666653 112489999884 33422 3456655443322355555 477
Q ss_pred CCCHHHHHHHHHcCCCE----EEeCCCCHHHHHHH
Q 009734 116 QDSVSTVYKCMMRGAAD----YLVKPVRRNELRNL 146 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~D----yL~KP~~~eeL~~~ 146 (527)
..+.+....+.++|++. |+.||...+++...
T Consensus 612 VE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~ 646 (651)
T PRK13561 612 VETEAQRDWLLKAGVGIAQGFLFARALPIEIFEER 646 (651)
T ss_pred CCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHH
Confidence 78889999999999864 47899999998643
No 437
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=32.63 E-value=4.8e+02 Score=26.05 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=63.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++||.+-+. ...++..++..+. .|....-..+..+.+.. .|++++--.. +.-|+-+++.+. ..+
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----adi~v~ps~~-E~~~~~~lEAma-----~G~ 291 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQA----MDVFLFPSLY-EGLPLVLIEAQA-----SGL 291 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHHh----cCEEEecccc-cCCCHHHHHHHH-----hCC
Confidence 468888876553 3345555555543 34433323444455543 5787764433 334777888773 367
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|||+. ....... .+.. ...|+..+-+.+++..+|..++...
T Consensus 292 PvI~s-~~~~~~~---~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 292 PCILS-DTITKEV---DLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred CEEEE-cCCchhh---hhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 89864 3333322 2223 3467777778899999999987654
No 438
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.61 E-value=5.4e+02 Score=26.05 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~-------a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+++.++..|.+++. ..+....+..+.... ||+||+- ...-++..+++.+++... .+|+++....
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~--pdaV~~~--~~~~~a~~~~~~~~~~G~--~~~~~~~~~~ 223 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAG--ADAIITV--LDAAVCASVLKAVRAAGL--TPKVVLSGTC 223 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcC--CCEEEEe--cChHHHHHHHHHHHHcCC--CCCEEEecCC
Confidence 44466677777876533 135667777776544 9999874 334478899999988763 5676655433
Q ss_pred CCHH
Q 009734 117 DSVS 120 (527)
Q Consensus 117 ~d~~ 120 (527)
.+..
T Consensus 224 ~~~~ 227 (341)
T cd06341 224 YDPA 227 (341)
T ss_pred CCHH
Confidence 3333
No 439
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=32.58 E-value=4.5e+02 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=9.5
Q ss_pred CHHHHHHHHHhcccCCCCeEEEE
Q 009734 91 SGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIil 113 (527)
+...+++.+++.....++++|..
T Consensus 203 ~~~~~~~~~~~~g~~~~~~~i~~ 225 (299)
T cd04509 203 DAATILKQAAEAGLTGGYPILGI 225 (299)
T ss_pred HHHHHHHHHHHcCCCCCCcEEec
Confidence 34444454444332223444443
No 440
>PRK11596 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.39 E-value=2.9e+02 Score=27.38 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred HHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHH
Q 009734 49 ALLRKSS-YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 49 ~lL~~~G-y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M----P-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~ 122 (527)
..|.+.| +-+..+..+...+..+...+ ||.|=+|-.+ . ...+..+++.|-.....-++. |+..+-.+.+..
T Consensus 147 ~~l~~~~~laLDDfG~g~s~l~~L~~l~--~d~IKiD~~~i~~i~~~~~~~~~~~~lv~~a~~~~~~-viAeGVEt~eq~ 223 (255)
T PRK11596 147 ASMCEFGPLWLDDFGTGMANFSALSEVR--YDYIKVARELFIMLRQSEEGRNLFSQLLHLMNRYCRG-VIVEGVETPEEW 223 (255)
T ss_pred HHHHHcCCEEEecCCCCHHHHHHHHhCC--CCEEEECHHHHHhhhcChhhHHHHHHHHHHHHHcCCe-EEEEeCCCHHHH
Confidence 3445555 22333566777778777654 9999998532 1 233455554443321112333 456788899999
Q ss_pred HHHHHcCCC---E-EEeCCCCHHHHHHHHH
Q 009734 123 YKCMMRGAA---D-YLVKPVRRNELRNLWQ 148 (527)
Q Consensus 123 ~~al~~GA~---D-yL~KP~~~eeL~~~L~ 148 (527)
..+.++|++ + |+.||....++...+.
T Consensus 224 ~~l~~lG~d~~QGy~~~~P~~~~~~~~l~~ 253 (255)
T PRK11596 224 RDVQRSPAFAAQGYFLSRPAPFETLETLPL 253 (255)
T ss_pred HHHHHCCCCEeecCccCCCCCHHHHHHHHh
Confidence 999999986 3 5788999988875543
No 441
>PRK13695 putative NTPase; Provisional
Probab=32.21 E-value=2.8e+02 Score=25.75 Aligned_cols=73 Identities=21% Similarity=0.187 Sum_probs=40.2
Q ss_pred CceEEEEeC--CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 77 NIDLILTEV--DLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM--RGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 77 ~pDLVLlDl--~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~--~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
.+|++|+|- .+...+ -.+.+.|...- ....|+|+++-..........+. .+..=|-+.|-+.++|...|...+
T Consensus 96 ~~~~lllDE~~~~e~~~-~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKS-PKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhh-HHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 589999996 332333 33344444332 23568887776543322222222 223335567888888887776543
No 442
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=32.19 E-value=4.7e+02 Score=25.22 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=65.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+. ...+..++...+. .|.......+..+.+.. .|++|.-....+ -|+-+++.+. ..+
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~e~-~~~~~~Ea~a-----~G~ 277 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRFEG-FPMVLLEAMA-----FGL 277 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccccc-cCHHHHHHHH-----cCC
Confidence 457777775443 3344555555543 34443333555555543 588887655533 3667777763 267
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||+........ .....|..+++.++.+.+++...|..++.
T Consensus 278 Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 278 PVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred CEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 888543222222 23445568899999999999999998864
No 443
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=32.18 E-value=4.6e+02 Score=25.09 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=46.1
Q ss_pred CEEEEEecCH----HHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADD----STRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-++. .....+...++..|+++... .+....+..+.... +|+|++-. ...+...+++.++
T Consensus 136 ~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~--~~~vi~~~--~~~~~~~~~~~~~ 211 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAG--PDAVFLAG--YGGDAALFLKQAR 211 (298)
T ss_pred CEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhcC--CCEEEEcc--ccchHHHHHHHHH
Confidence 4555554332 33455556666677665432 24555666665443 77777642 2255677777777
Q ss_pred hcccCCCCeEEEEecCCCHH
Q 009734 101 EHEICKNIPVIMMSSQDSVS 120 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~ 120 (527)
+... +++||.+.......
T Consensus 212 ~~g~--~~~~~~~~~~~~~~ 229 (298)
T cd06268 212 EAGL--KVPIVGGDGAAAPA 229 (298)
T ss_pred HcCC--CCcEEecCccCCHH
Confidence 6543 56676665544433
No 444
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=32.15 E-value=2.5e+02 Score=30.06 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=43.4
Q ss_pred hhhcCcCEEEEEecCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHcCCCCceEEEEeCCCCCCCH
Q 009734 26 FLQRMALRVLLVEADDST----RQIVTALLRKSSYRVTAVPD---------GLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~----r~~L~~lL~~~Gy~V~~a~d---------g~eALe~L~~~~~~pDLVLlDl~MP~mDG 92 (527)
++.+...|+|||-|.... ...+...|+..|+++..+.. ..++++.+++. .+|+|| -+.|.+-
T Consensus 17 ~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~--~~D~II---aiGGGS~ 91 (386)
T cd08191 17 LAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARA--GPDVII---GLGGGSC 91 (386)
T ss_pred HHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEE---EeCCchH
Confidence 333333689999876433 34566678777887665432 23455555553 489987 3567777
Q ss_pred HHHHHHHH
Q 009734 93 FALLTLVM 100 (527)
Q Consensus 93 lelL~~Lr 100 (527)
+++.+.+.
T Consensus 92 iD~aK~ia 99 (386)
T cd08191 92 IDLAKIAG 99 (386)
T ss_pred HHHHHHHH
Confidence 77777664
No 445
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=32.08 E-value=1.2e+02 Score=31.06 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=31.0
Q ss_pred CEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 32 LRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 32 lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
.+|.||+-|+. ..+.+..+-+..|+.+..+.+..+..+.++... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 67788777763 233444444445665655666655555555432 378888874
No 446
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=31.93 E-value=4.6e+02 Score=26.57 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=46.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC-------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD-------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~d-------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
..+|.++-.+... .+.+.|+..||.|....+ ..+.++.++... ||+||+|.- ..+. +..+.++..
T Consensus 31 g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~vV~D~y--~~~~-~~~~~~k~~- 102 (279)
T TIGR03590 31 GAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEK--FDILIVDHY--GLDA-DWEKLIKEF- 102 (279)
T ss_pred CCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcC--CCEEEEcCC--CCCH-HHHHHHHHh-
Confidence 4566555443221 235677888998876643 445677777644 999999974 4443 355666542
Q ss_pred cCCCCeEEEEecCC
Q 009734 104 ICKNIPVIMMSSQD 117 (527)
Q Consensus 104 ~~~~iPVIilSa~~ 117 (527)
..+++++.-..
T Consensus 103 ---~~~l~~iDD~~ 113 (279)
T TIGR03590 103 ---GRKILVIDDLA 113 (279)
T ss_pred ---CCeEEEEecCC
Confidence 34677776543
No 447
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.91 E-value=3e+02 Score=26.66 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg---~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||.+.... +. .++++.+.... +|-||+--.. .+.-.+++.+++ .++|||++-..
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgii~~~~~--~~~~~~~~~~~~----~~ipvV~i~~~ 88 (269)
T cd06281 17 LFSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRR--MDGIIIAPGD--ERDPELVDALAS----LDLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcC--CCEEEEecCC--CCcHHHHHHHHh----CCCCEEEEecc
Confidence 44556677788899876542 22 24555555443 8888874322 223345666654 36799988643
No 448
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.89 E-value=3e+02 Score=30.94 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=58.9
Q ss_pred cCEEEEEecCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHcCCCCceEEEE--------------eCCCC
Q 009734 31 ALRVLLVEADDST----RQIVTALLRKSS--YRVTA--VPDGLKAWEVLKGRPRNIDLILT--------------EVDLP 88 (527)
Q Consensus 31 ~lrVLLVDDD~~~----r~~L~~lL~~~G--y~V~~--a~dg~eALe~L~~~~~~pDLVLl--------------Dl~MP 88 (527)
...+++||--+-. .+.++.+=+.++ ..|.. +.+.+.|..++... .|.|.+ ++..|
T Consensus 254 Gvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG---Ad~I~vg~g~Gs~c~tr~~~~~g~~ 330 (502)
T PRK07107 254 GADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG---ADFVKVGIGGGSICITREQKGIGRG 330 (502)
T ss_pred CCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC---CCEEEECCCCCcCcccccccCCCcc
Confidence 4666766633332 333333333333 34444 56777777777643 577744 33333
Q ss_pred CCCHHHHHHHHH-hc--ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 89 SISGFALLTLVM-EH--EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 89 ~mDGlelL~~Lr-~~--~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..+.+.-+.... .. .....+|||+-.+--....+.+|+.+||+..+.=
T Consensus 331 ~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 331 QATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 333332222211 10 1123489999999888999999999999887743
No 449
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.87 E-value=3.7e+02 Score=30.62 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=62.5
Q ss_pred CcCEEEEEec--CHHHHH---HHHHHHHhCCCEEEEECCHHHHHHH-H-H-----cCCCCceEEEEeCCCCCCCHHHHHH
Q 009734 30 MALRVLLVEA--DDSTRQ---IVTALLRKSSYRVTAVPDGLKAWEV-L-K-----GRPRNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 30 ~~lrVLLVDD--D~~~r~---~L~~lL~~~Gy~V~~a~dg~eALe~-L-~-----~~~~~pDLVLlDl~MP~mDGlelL~ 97 (527)
.+++|+||-. .+...+ .+..+|+..|+++.........+.. + . .....+|+||+ -|.|| .+|+
T Consensus 289 ~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDG-T~L~ 363 (569)
T PRK14076 289 KPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDG-TVLR 363 (569)
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcH-HHHH
Confidence 4568888833 344443 4555566778887765433222221 0 0 00112677766 27787 3555
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
..+... ..++||+-+. .|-.+||. .+..+++...|..+++..
T Consensus 364 aa~~~~-~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 364 ASKLVN-GEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHHHhc-CCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 555432 2478988554 46678887 688999999999987653
No 450
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=31.86 E-value=2.6e+02 Score=29.52 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=42.8
Q ss_pred CEEEEEecCHHHH----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDSTR----QIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~r----~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.++|||-|..... ..+...|+..|+.+..+. +..++++.++... +|+|| -+.|..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Ii---aiGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVI---AVGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEE---EeCCchHHHHHHH
Confidence 5899998865543 467778887777655432 2445666666544 89887 3567677777776
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 99 va 100 (370)
T cd08551 99 IA 100 (370)
T ss_pred HH
Confidence 64
No 451
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.80 E-value=1.4e+02 Score=29.41 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCEEEEECCHHHHHHHHHcCCCCceEEEEeCCC---CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCC
Q 009734 55 SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL---PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (527)
Q Consensus 55 Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M---P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~ 131 (527)
++.|....+.+++.++++.. .|+|=+|... | ..--+++++|++.. +++|.--...+....|.++|+
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~- 113 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY------QLVMADISTLEEAINAAELGF- 113 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT--
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCC-
Confidence 56788888999999988864 7999999865 5 77888899997642 566777788999999999996
Q ss_pred EEEe
Q 009734 132 DYLV 135 (527)
Q Consensus 132 DyL~ 135 (527)
||+.
T Consensus 114 D~I~ 117 (192)
T PF04131_consen 114 DIIG 117 (192)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 5553
No 452
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.64 E-value=2.6e+02 Score=28.68 Aligned_cols=72 Identities=21% Similarity=0.278 Sum_probs=52.1
Q ss_pred cccchHHhhhcC---cCEEEEEecCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHcCCCCceEEEEeCC
Q 009734 19 GIAKWETFLQRM---ALRVLLVEADDSTRQIVTALLRKS--SYRVTAVPD-------GLKAWEVLKGRPRNIDLILTEVD 86 (527)
Q Consensus 19 ~~~~~e~~~~~~---~lrVLLVDDD~~~r~~L~~lL~~~--Gy~V~~a~d-------g~eALe~L~~~~~~pDLVLlDl~ 86 (527)
++-=|+.++.++ ..+|.++-..+.+.+.....|++. +..|+...+ .+..++.+.... ||||++-+.
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~--pdil~VgmG 170 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASG--PDILLVGMG 170 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcC--CCEEEEeCC
Confidence 344456666665 389999999999999999999875 356665442 124456666544 999999999
Q ss_pred CCCCCH
Q 009734 87 LPSISG 92 (527)
Q Consensus 87 MP~mDG 92 (527)
+|...-
T Consensus 171 ~P~QE~ 176 (253)
T COG1922 171 VPRQEI 176 (253)
T ss_pred CchhHH
Confidence 998754
No 453
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=31.64 E-value=5.4e+02 Score=25.71 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=34.7
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~ 119 (527)
+....+..++... ||+|++- ....++..+++.+++....+++|++......+.
T Consensus 174 d~~~~i~~l~~~~--~d~i~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 226 (333)
T cd06332 174 DFSAELAQIRAAK--PDAVFVF--LPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQ 226 (333)
T ss_pred chHHHHHHHHhcC--CCEEEEe--cccchHHHHHHHHHHcCcccCCceeccCCCCCH
Confidence 5555566666544 8999973 344578888999987765556787754444443
No 454
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=31.63 E-value=3.5e+02 Score=28.63 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=40.3
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE------EeC-CCCHHHHHHHHHHHHH
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY------LVK-PVRRNELRNLWQHVWR 152 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy------L~K-P~~~eeL~~~L~~v~r 152 (527)
++.+.++++. ...++|||.+.+-.+.+.+.+.+.+||+.. +.+ |.-..++..-|..++.
T Consensus 276 l~~v~~l~~~-~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 276 TEVIRRLYKE-LGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4466777654 223699999999999999999999998654 333 5555555555554443
No 455
>PRK00654 glgA glycogen synthase; Provisional
Probab=31.58 E-value=6.3e+02 Score=27.46 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=64.4
Q ss_pred cCEEEEEecC-HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEAD-DSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD-~~~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++|+-+- +.....++.+.++.+-.+.. .-+...+-.++.. .|++++--. -+.-|+-+++.+.. .
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~~----aDv~v~PS~-~E~~gl~~lEAma~-----G 380 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYAG----ADMFLMPSR-FEPCGLTQLYALRY-----G 380 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHhh----CCEEEeCCC-CCCchHHHHHHHHC-----C
Confidence 5778888764 44566677776666554432 2232323334432 588887432 34557777777632 4
Q ss_pred CeEEEEecCCCHHHHHHHHHcC------CCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRG------AADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~G------A~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|+|+ +....... .+.-| .++|+..|-+.++|...|.+++.
T Consensus 381 ~p~V~-~~~gG~~e---~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 381 TLPIV-RRTGGLAD---TVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred CCEEE-eCCCCccc---eeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 56665 33332222 22233 78999999999999999988764
No 456
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.56 E-value=2.4e+02 Score=27.52 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+...+++.||++.... +.. +.++.+.... +|.||+-- ...+. .++++++.. .++|||++-.
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~--~Dgiii~~--~~~~~~~~~i~~~~~----~~iPvV~~~~ 88 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRG--VNVLIINP--VDPEGLVPAVAAAKA----AGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEec--CCccchHHHHHHHHH----CCCCEEEecC
Confidence 3345566778899877653 222 3455555444 89888742 22222 345566643 3689998854
No 457
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=31.36 E-value=5e+02 Score=27.11 Aligned_cols=68 Identities=15% Similarity=-0.007 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcc--c-CCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHE--I-CKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~--~-~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
..+|++.++.....+|+|.+| .|.+ .+..++++++++.- . .+.+ .|..|+--+.+.+.+....|+|-|
T Consensus 198 v~eal~~~~~~~~~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 198 KEEALKAAKALGDKLDGVRLD-TPSSRRGVFRYLIREVRWALDIRGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred hHHHHHHHHHhCCCCcEEEEC-CCCCCCCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 447888876543348999999 5541 22445555554431 1 1333 466788889999999999996555
No 458
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.34 E-value=2.3e+02 Score=28.45 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=52.6
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCCC---CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPS---ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP~---mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..++.+..+.+.... --.|+++|+.-.+ ..-++++++|++. .++||++--+-.+.+.+.+++.+||+..++-
T Consensus 29 ~~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776543 2357888887543 2336777777664 3689999889999999999999999887754
No 459
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.31 E-value=1.1e+02 Score=31.94 Aligned_cols=58 Identities=16% Similarity=0.296 Sum_probs=44.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG 92 (527)
|+|||+-+.-.....|.+.|. .+++|+.. .+.....+.+++.+ ||+||--.-+...|.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD~ 65 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVDK 65 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECcccccccc
Confidence 359999999999999999998 66777653 46677777887655 999997766665554
No 460
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=31.31 E-value=3.5e+02 Score=25.53 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 45 QIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~a~dg------~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
..++..++..|+.+...... .++++.+.... +|.||+....+ .... ++.+.. .++|||++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~iii~~~~~--~~~~-~~~~~~----~~ipvv~~~~~ 87 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRR--VDGIILAPSRL--DDEL-LEELAA----LGIPVVLVDRP 87 (264)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--cCEEEEecCCc--chHH-HHHHHH----cCCCEEEeccc
Confidence 44555566678887664322 34445554433 89888754333 2333 454433 37899988654
No 461
>PRK00955 hypothetical protein; Provisional
Probab=31.26 E-value=3.2e+02 Score=31.68 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=70.3
Q ss_pred cchHHhhhcCcCEEEEEe------cCHHHHHHHHHHHHhCCCEEEEECCH----HHHHHHHHcCCCCceEEEE------e
Q 009734 21 AKWETFLQRMALRVLLVE------ADDSTRQIVTALLRKSSYRVTAVPDG----LKAWEVLKGRPRNIDLILT------E 84 (527)
Q Consensus 21 ~~~e~~~~~~~lrVLLVD------DD~~~r~~L~~lL~~~Gy~V~~a~dg----~eALe~L~~~~~~pDLVLl------D 84 (527)
..|+. +-|++|- ..+.-..+|.++|+..||+|..+..+ .+.+..| ..|+|++. |
T Consensus 9 ~gw~~------~d~i~v~gdayvdhp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~~----g~P~l~~~vs~g~~d 78 (620)
T PRK00955 9 RGWDE------LDFILVTGDAYVDHPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKKL----GKPRLFFLVSAGNMD 78 (620)
T ss_pred cCCCc------cCEEEEeCcccccCCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHhh----CCCcEEEEeccccHH
Confidence 35666 5666664 44555678899999999999876422 2333333 23888885 1
Q ss_pred ----------------CCCC--------CCCHHHHHHHHHhcccCCCCeEEEEecCCCHH-----------HHHHHHHcC
Q 009734 85 ----------------VDLP--------SISGFALLTLVMEHEICKNIPVIMMSSQDSVS-----------TVYKCMMRG 129 (527)
Q Consensus 85 ----------------l~MP--------~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~-----------~~~~al~~G 129 (527)
.--| +-.-+..++.|++. .+++|||+=.-+.+.. .....+...
T Consensus 79 smv~~yt~~~~~r~~d~ytpgg~~~~rpdra~i~y~~~ik~~--~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~ 156 (620)
T PRK00955 79 SMVNHYTASKKLRSKDAYSPGGKMGLRPDRATIVYCNKIKEA--YPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDS 156 (620)
T ss_pred HHHhhcchhhhcccccccCCCCccCCCcchHHHHHHHHHHHH--CCCCcEEeCChhhhccccccchhhhhhhhHHHhhcc
Confidence 1112 22335557777765 4889888633222221 111223333
Q ss_pred CCEEEeCCCCHHHHHHHHHHHH
Q 009734 130 AADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 130 A~DyL~KP~~~eeL~~~L~~v~ 151 (527)
..|||+.---...+..+++++.
T Consensus 157 ~aD~vv~GeGE~t~~eL~~~L~ 178 (620)
T PRK00955 157 GADLLVYGMGEKPIVEIARRLK 178 (620)
T ss_pred CCCEEEECCcHHHHHHHHHHHH
Confidence 4599999888777877777653
No 462
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=31.26 E-value=1.3e+02 Score=29.92 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCEEEEE----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHH----HHHHHhccc-CCCCeEEEEec
Q 009734 45 QIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL----LTLVMEHEI-CKNIPVIMMSS 115 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlel----L~~Lr~~~~-~~~iPVIilSa 115 (527)
......+++.|..+..+ .+.+++..+++.. ..|.|++=..-||.+|..+ +.+|++... .+. -.|.+.+
T Consensus 104 ~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~--~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~-~~I~VdG 180 (228)
T PTZ00170 104 KAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTD--LVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPH-LNIQVDG 180 (228)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccc--hhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhccc-CeEEECC
Confidence 34445555667654432 2334443343211 2676654223377777533 334433221 122 3466677
Q ss_pred CCCHHHHHHHHHcCCCEEEe
Q 009734 116 QDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~ 135 (527)
--..+.+..+.++||+-+++
T Consensus 181 GI~~~ti~~~~~aGad~iVv 200 (228)
T PTZ00170 181 GINLETIDIAADAGANVIVA 200 (228)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 77889999999999987654
No 463
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=31.21 E-value=5e+02 Score=25.48 Aligned_cols=108 Identities=17% Similarity=0.152 Sum_probs=57.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC-EEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCC----HHHHHHHHHhcc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS----GFALLTLVMEHE 103 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD----GlelL~~Lr~~~ 103 (527)
..++.|+.+.+. ...+..++...+. .|.. .-+..+..+.+.. .|++|+=....+.. +..+++.+.
T Consensus 250 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----~di~i~~~~~~~~~~~~~p~~~~Ea~~--- 321 (394)
T cd03794 250 DIRFLIVGDGPE-KEELKELAKALGLDNVTFLGRVPKEELPELLAA----ADVGLVPLKPGPAFEGVSPSKLFEYMA--- 321 (394)
T ss_pred CeEEEEeCCccc-HHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHh----hCeeEEeccCcccccccCchHHHHHHH---
Confidence 456666655433 2233333332222 2222 2344566666643 46766644333221 233556552
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||+.......+ .+..+..+++..+-+.++|...|..++.
T Consensus 322 --~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 364 (394)
T cd03794 322 --AGKPVLASVDGESAE----LVEEAGAGLVVPPGDPEALAAAILELLD 364 (394)
T ss_pred --CCCcEEEecCCCchh----hhccCCcceEeCCCCHHHHHHHHHHHHh
Confidence 257887643332222 3334467789999999999999998873
No 464
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=31.21 E-value=3e+02 Score=30.11 Aligned_cols=101 Identities=12% Similarity=0.077 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCEEEE---EC---CHHH---HHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 44 RQIVTALLRKSSYRVTA---VP---DGLK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~---a~---dg~e---ALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
.+.+.+.+++.|..|+. +. ...+ .+..++.. ..+|+||+... ..++..+++++++... ..++|.-.
T Consensus 191 ~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~-~~a~vVvl~~~--~~~~~~ll~~a~~~g~--~~~wigs~ 265 (458)
T cd06375 191 IEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQK-PNARVVVLFTR--SEDARELLAAAKRLNA--SFTWVASD 265 (458)
T ss_pred HHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhcc-CCCEEEEEecC--hHHHHHHHHHHHHcCC--cEEEEEec
Confidence 34455555666766543 21 1122 33333322 24788887654 3456777777776543 23333222
Q ss_pred cCCCHHHHHH---HHHcCCCEEEeCCCCHHHHHHHHHH
Q 009734 115 SQDSVSTVYK---CMMRGAADYLVKPVRRNELRNLWQH 149 (527)
Q Consensus 115 a~~d~~~~~~---al~~GA~DyL~KP~~~eeL~~~L~~ 149 (527)
+-........ ..-.|+..|..+-.....+..-++.
T Consensus 266 ~~~~~~~~~~~~~~~~~G~i~~~~~~~~i~~f~~yl~~ 303 (458)
T cd06375 266 GWGAQESIVKGSEDVAEGAITIELASHPIPDFDRYFQS 303 (458)
T ss_pred cccccchhhhccchhhceEEEEEeccccchhHHHHHHh
Confidence 2222211111 1234777777777666666655544
No 465
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=31.20 E-value=65 Score=36.30 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=46.3
Q ss_pred EEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeC--CCCCCCHHHHHHHHHhcccCCCCe
Q 009734 33 RVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEV--DLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 33 rVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl--~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+|||||....+-..|..+|++.|+. |........-++.+... .||.||+-= .-|..++.. +..++.. ...+|
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~--~~d~vIlsgGP~~p~~~~~~-~~li~~~--~~~~P 75 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEAL--NPSHIVISPGPGRPEEAGIS-VEVIRHF--SGKVP 75 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhc--CCCEEEECCCCCChhhCCcc-HHHHHHh--hcCCC
Confidence 4899999999999999999999985 66553221113333332 388887742 222233322 2233322 24679
Q ss_pred EEEEe
Q 009734 110 VIMMS 114 (527)
Q Consensus 110 VIilS 114 (527)
|+-+.
T Consensus 76 vLGIC 80 (534)
T PRK14607 76 ILGVC 80 (534)
T ss_pred EEEEc
Confidence 88665
No 466
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.00 E-value=3.2e+02 Score=27.58 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=45.9
Q ss_pred cCEEEEE------ecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 31 ALRVLLV------EADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLV------DDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
..+|++| +|........+..++..|+++..+....+.++.|.. .|+|++ +|.+-+.+++.++..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~----ad~I~v----~GGnt~~l~~~l~~~ 100 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN----AEAIFV----GGGNTFQLLKQLYER 100 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc----CCEEEE----CCccHHHHHHHHHHC
Confidence 4678887 444555667888899999998887777766666653 577776 577777777776544
No 467
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=30.95 E-value=2.6e+02 Score=27.20 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC-C---HHHHHHHHHcCCCCceEEEEe-CCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVP-D---GLKAWEVLKGRPRNIDLILTE-VDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~-d---g~eALe~L~~~~~~pDLVLlD-l~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
+.+.+.+.++..||.+..+. + -....+.+... .+|.||+. ... + -..++++.. .++|||++..
T Consensus 28 ~~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~--~~dgiii~~~~~---~-~~~~~~~~~----~~ipvV~~~~ 95 (275)
T cd06295 28 LLGGIADALAERGYDLLLSFVSSPDRDWLARYLASG--RADGVILIGQHD---Q-DPLPERLAE----TGLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhC--CCCEEEEeCCCC---C-hHHHHHHHh----CCCCEEEECC
Confidence 34457777888899876543 2 22344445433 38977663 221 2 244555543 3789998854
No 468
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=30.76 E-value=2.2e+02 Score=30.65 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=43.4
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.|||||-|... ..+.+...|+..|+++..+. ...++++.++... +|+|| -+.|.+-+++.+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~II---aiGGGS~iD~AK~ 96 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFK--PDTII---ALGGGSPMDAAKI 96 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCCccHHHHHHH
Confidence 58999987543 33457778888888765542 4557777777654 89888 3556666777766
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 97 iA 98 (398)
T cd08178 97 MW 98 (398)
T ss_pred HH
Confidence 64
No 469
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=30.51 E-value=4.6e+02 Score=28.63 Aligned_cols=91 Identities=12% Similarity=0.213 Sum_probs=44.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHH-HcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVL-KGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~G-y~V~~a~dg~eALe~L-~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++|||+-- -.+...+...|.+.+ ++|+.+.-..+..+.+ .........+.+|+ .|.-.+.+.|+.. ++-
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~----~d~~al~~li~~~----d~V 72 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDA----ADVDALVALIKDF----DLV 72 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecc----cChHHHHHHHhcC----CEE
Confidence 46666666 455555555554444 6666665443333333 22112355566664 2222333333221 334
Q ss_pred EEEEecCCCHHHHHHHHHcCCC
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAA 131 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~ 131 (527)
|.++-.+-....+..|++.|++
T Consensus 73 In~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 73 INAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred EEeCCchhhHHHHHHHHHhCCC
Confidence 4444445566666666777753
No 470
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=30.46 E-value=2.9e+02 Score=26.77 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccCCCCeEEEE
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg---~eALe~L~~~~~~pDLVLlDl~MP~mD--GlelL~~Lr~~~~~~~iPVIil 113 (527)
.+...+.+.+++.||.+.... +. .++++.+.... +|.||+--..+... -.+.++.+.. .++|||++
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgii~~~~~~~~~~~~~~~~~~~~~----~~ipvV~~ 89 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQG--IDGLIIEPTKSALPNPNIDLYLKLEK----LGIPYVFI 89 (273)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEeccccccccccHHHHHHHHH----CCCCEEEE
Confidence 344556677778899877643 22 23555555544 89998732222111 1245555533 36899988
Q ss_pred ec
Q 009734 114 SS 115 (527)
Q Consensus 114 Sa 115 (527)
-.
T Consensus 90 ~~ 91 (273)
T cd01541 90 NA 91 (273)
T ss_pred ec
Confidence 64
No 471
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.45 E-value=1.7e+02 Score=27.67 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCC
Q 009734 62 PDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP 137 (527)
.+.++++++++..... +-.+.+.+|- -.|+++++.|++.. +++||++.. .......+..+.++|++..+.-.
T Consensus 10 ~~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~--~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 10 LDLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAF--PDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred CCHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHC--CCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 3556666655543322 3334444442 35688888887652 467777632 22222345677889988776543
Q ss_pred C
Q 009734 138 V 138 (527)
Q Consensus 138 ~ 138 (527)
.
T Consensus 86 ~ 86 (202)
T cd04726 86 A 86 (202)
T ss_pred e
Confidence 3
No 472
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=30.33 E-value=2.2e+02 Score=28.78 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVPD---G---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~d---g---~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+.+.+.++..||.+..+.. . .++++.+.... +|.||+--..+. .-...++.+++ .++|||++-.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~--vDgIIi~~~~~~-~~~~~l~~~~~----~~iPvV~~d~ 87 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARG--VDVLVIIPQNGQ-VLSNAVQEAKD----EGIKVVAYDR 87 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChh-HHHHHHHHHHH----CCCeEEEecC
Confidence 4556788888888998776532 2 24555555544 898887422111 11345566644 3689998854
No 473
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=30.31 E-value=5.2e+02 Score=25.13 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=62.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.++++|+.+.+. ...+...++..+. .|.. .-+..+..+.+.. .|++|+-... +.-|..+++.+. .
T Consensus 233 ~~~l~i~g~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~i~~~~~-~~~~~~~~Ea~~-----~ 301 (377)
T cd03798 233 DVHLVIVGDGPL-REALEALAAELGLEDRVTFLGAVPHEEVPAYYAA----ADVFVLPSLR-EGFGLVLLEAMA-----C 301 (377)
T ss_pred CeEEEEEcCCcc-hHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHh----cCeeecchhh-ccCChHHHHHHh-----c
Confidence 355555554332 3345555544332 2332 2244555666653 4676653322 333556666663 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+|||+. ..... .+.+..+..+++.+|-+.+++...|..++..
T Consensus 302 G~pvI~~-~~~~~---~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 302 GLPVVAT-DVGGI---PEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred CCCEEEe-cCCCh---HHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 5688753 33332 3445667778999999999999999988754
No 474
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=30.28 E-value=1.8e+02 Score=31.02 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=42.0
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.|+|||-|... ..+.+...|++.|+++..+. ...++++.++... +|+|| -+.|.+-+++.+.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~II---aiGGGS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASG--ADYLI---AIGGGSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCChHHHHHHHH
Confidence 58999988654 34457778888887665542 3356777777654 89887 3456666777765
Q ss_pred H
Q 009734 99 V 99 (527)
Q Consensus 99 L 99 (527)
+
T Consensus 106 i 106 (382)
T PRK10624 106 I 106 (382)
T ss_pred H
Confidence 4
No 475
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.27 E-value=3.2e+02 Score=25.26 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=43.4
Q ss_pred cCEEEEEecCHHHHH-----------HHHHHHHhC---CCEEEE-E---CCHHHHHHHHHc-CCCCceEEEEeCCCCC--
Q 009734 31 ALRVLLVEADDSTRQ-----------IVTALLRKS---SYRVTA-V---PDGLKAWEVLKG-RPRNIDLILTEVDLPS-- 89 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~-----------~L~~lL~~~---Gy~V~~-a---~dg~eALe~L~~-~~~~pDLVLlDl~MP~-- 89 (527)
+++||++-|.-.... .+...|.+. ++.+.- . ....+.++.+.. ....||+|++-+..-+
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~ 81 (191)
T cd01836 2 PLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVT 81 (191)
T ss_pred CeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcC
Confidence 356777766554442 244555432 344433 2 234445555542 1245999999433222
Q ss_pred --CC-------HHHHHHHHHhcccCCCCeEEEEec
Q 009734 90 --IS-------GFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 90 --mD-------GlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+ =.++++.|+.. .++++||+++-
T Consensus 82 ~~~~~~~~~~~l~~li~~i~~~--~~~~~iiv~~~ 114 (191)
T cd01836 82 HLTSIARWRKQLAELVDALRAK--FPGARVVVTAV 114 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHhh--CCCCEEEEECC
Confidence 11 12455666543 26788888774
No 476
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=30.18 E-value=2.9e+02 Score=29.40 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=42.4
Q ss_pred cCEEEEEecCHH-HHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVEADDS-TRQIVTALLRKSSYRVTAV--------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVDDD~~-~r~~L~~lL~~~Gy~V~~a--------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..|+|||-|... ..+.+...|+..|+++..+ ....++++.++... +|+||- +.|.+-+++.+.+.
T Consensus 22 ~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~aK~ia 95 (374)
T cd08183 22 GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAG--CDVVIA---IGGGSVIDAGKAIA 95 (374)
T ss_pred CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcC--CCEEEE---ecCchHHHHHHHHH
Confidence 468999987644 4555667788777765443 13556677776654 899874 56666666666553
No 477
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.17 E-value=3.2e+02 Score=25.70 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~d------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...++..++..||++..... ..++++.+... .+|.||+-...+.... ++..+.. .++|+|++..
T Consensus 16 ~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~--~~d~ii~~~~~~~~~~--~~~~l~~----~~ip~v~~~~ 87 (264)
T cd01537 16 QVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIAR--GVDGIIIAPSDLTAPT--IVKLARK----AGIPVVLVDR 87 (264)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHc--CCCEEEEecCCCcchh--HHHHhhh----cCCCEEEecc
Confidence 3455667777888998766532 23444444433 3888877543333221 4555533 3689998865
Q ss_pred CC
Q 009734 116 QD 117 (527)
Q Consensus 116 ~~ 117 (527)
..
T Consensus 88 ~~ 89 (264)
T cd01537 88 DI 89 (264)
T ss_pred CC
Confidence 43
No 478
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=30.08 E-value=4e+02 Score=27.90 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=62.9
Q ss_pred EEecCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHcCCCCceEEEEeCCC-C----CCCHHHHHHHHHh
Q 009734 36 LVEADDSTRQIVTALLRKSSYRVTA-V-----P---DGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFALLTLVME 101 (527)
Q Consensus 36 LVDDD~~~r~~L~~lL~~~Gy~V~~-a-----~---dg~eALe~L~~~~~~pDLVLlDl~M-P----~mDGlelL~~Lr~ 101 (527)
++.|-....+.++.+-...++.|.. . . +..+..+.++... .|.|.+.-.. + +...+++++++++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G--~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG--IQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhC--CCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455566666666665555543332 1 1 2334445555443 6777654332 2 2233888888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHH-cCCCEEEe------CCCCHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLV------KPVRRNEL 143 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL~------KP~~~eeL 143 (527)
. .++|||..-+-.+.+.+.++++ .|++..+. .|+-..++
T Consensus 192 ~---~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~ 237 (321)
T PRK10415 192 K---VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREI 237 (321)
T ss_pred h---cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHH
Confidence 5 3799998888889999999997 58887753 57644443
No 479
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=30.04 E-value=5.8e+02 Score=25.60 Aligned_cols=79 Identities=9% Similarity=0.012 Sum_probs=50.0
Q ss_pred CEEEEE-ecCHHH---HHHHHHHHHhCCCEEEE-------ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLV-EADDST---RQIVTALLRKSSYRVTA-------VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLV-DDD~~~---r~~L~~lL~~~Gy~V~~-------a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+| .|.... ...++..|++.|++++. ..|....+..++... ||+|++ ....-+...++++++
T Consensus 135 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~--pd~v~~--~~~~~~~~~~~~~~~ 210 (336)
T cd06360 135 KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDV--PDAVFV--FFAGGDAIKFVKQYD 210 (336)
T ss_pred CeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcC--CCEEEE--ecccccHHHHHHHHH
Confidence 345555 444433 34566777778887642 246667777777654 899986 344667788899998
Q ss_pred hcccCCCCeEEEEe
Q 009734 101 EHEICKNIPVIMMS 114 (527)
Q Consensus 101 ~~~~~~~iPVIilS 114 (527)
+.....++|++-.+
T Consensus 211 ~~g~~~~~~~~~~~ 224 (336)
T cd06360 211 AAGLKAKIPLIGSG 224 (336)
T ss_pred HcCCccCCeEEecc
Confidence 77654456666433
No 480
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=30.02 E-value=2e+02 Score=31.58 Aligned_cols=95 Identities=14% Similarity=0.175 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEec
Q 009734 41 DSTRQIVTALLRKSSYRVTAVP----DGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~a~----dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
|.-...|+.+|+. .+++.+. +..+.++.. ..||+|.+-..-+.. ..+++++.+++.. ++++||+--.
T Consensus 34 Pl~L~ylAa~l~~--~~iiD~~~~~~~~~~~~~~~----~~~Dlv~is~~t~~~~~~~~ia~~iK~~~--p~~~vv~GG~ 105 (472)
T TIGR03471 34 PTWLAQPAAMIPG--SRLVDAPPHGVTIDDTLAIA----KDYDLVVLHTSTPSFPSDVKTAEALKEQN--PATKIGFVGA 105 (472)
T ss_pred ChHHHHHHHhccC--ceEEeCCcccCCHHHHHHHh----cCCCEEEEECCCcchHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 5677788888864 3444322 223444432 238999998766654 5788889998764 6777776555
Q ss_pred CCCHHHHHHHHH-cCCCEEEeCCCCHHHHH
Q 009734 116 QDSVSTVYKCMM-RGAADYLVKPVRRNELR 144 (527)
Q Consensus 116 ~~d~~~~~~al~-~GA~DyL~KP~~~eeL~ 144 (527)
+.+... .+++. ....||++..--...|.
T Consensus 106 h~t~~p-e~~l~~~~~vD~Vv~GEgE~~l~ 134 (472)
T TIGR03471 106 HVAVLP-EKTLKQGPAIDFVCRREFDYTIK 134 (472)
T ss_pred CcccCH-HHHHhcCCCeeEEEeCchHHHHH
Confidence 543322 23444 35678998865444443
No 481
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=30.00 E-value=5.9e+02 Score=31.45 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=66.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCE-------------EEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYR-------------VTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-------------V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlel 95 (527)
.+.+||||--=..-+..+..+.+..+++ |+.+. +...|-++.+... ....|-+|+. |--++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-~~~~v~lDv~----D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-NAEAVQLDVS----DSESL 642 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcC-CCceEEeecC----CHHHH
Confidence 3579999997555554444444444544 55555 3334433333221 2455777752 33344
Q ss_pred HHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 96 LTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
...+.. .++-|+++-..-....+..|+++|..-+..| +..++...+...+-+
T Consensus 643 ~~~v~~----~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 643 LKYVSQ----VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred HHhhcC----CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHHH
Confidence 444433 2444444444557889999999999888888 777777766655543
No 482
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=29.87 E-value=2.4e+02 Score=29.80 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=44.3
Q ss_pred CEEEEEecCHH-HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 32 LRVLLVEADDS-TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 32 lrVLLVDDD~~-~r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
.|+|||-|... ....+...|+..|+.+..+. +..++++.+++.. +|+|| -+.|..-+++.+.+..
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGs~~D~aK~ia~ 98 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVL---AVGGGSVLDTAKALAA 98 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEE---EeCCcHHHHHHHHHHH
Confidence 58999988755 45667888888777655432 3556777776644 89887 4567677777776643
No 483
>PRK04148 hypothetical protein; Provisional
Probab=29.85 E-value=2.8e+02 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=45.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
.++||.|-== +...+...|.+.|++|+.+.--.++++.++... .+++.-|+.-|.++-+
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--LNAFVDDLFNPNLEIY 75 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CeEEECcCCCCCHHHH
Confidence 3578877754 444567777788999999988888888887654 7899999998887644
No 484
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=29.84 E-value=1.9e+02 Score=26.85 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=21.5
Q ss_pred CEEEEE--ecCHHHHHHHHHHHHhC--CCEEEEECCHHHHHH
Q 009734 32 LRVLLV--EADDSTRQIVTALLRKS--SYRVTAVPDGLKAWE 69 (527)
Q Consensus 32 lrVLLV--DDD~~~r~~L~~lL~~~--Gy~V~~a~dg~eALe 69 (527)
++|+|. |.+......+...|... ||.+.......+.|+
T Consensus 5 ~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~ 46 (142)
T PRK05234 5 KRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQ 46 (142)
T ss_pred cEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHH
Confidence 344443 33444455566666677 898876655555444
No 485
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=29.80 E-value=2e+02 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.040 Sum_probs=43.0
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~~----r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
-++|||-|.... .+.+...|+..|.++..+. ...++++.+++.. +|+|| -+.|.+-+++.+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Ii---avGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVI---AFGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEE---EeCChHHHHHHHH
Confidence 578888775332 2557888888887765442 3557777777654 99998 4567777777766
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 125 ia 126 (395)
T PRK15454 125 VA 126 (395)
T ss_pred HH
Confidence 53
No 486
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.79 E-value=6.6e+02 Score=26.16 Aligned_cols=67 Identities=15% Similarity=-0.018 Sum_probs=45.7
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+.+.+++.+.++.. +|+|++| +|.- -++-+.+.... ...+ |..|+--..+.+.+....|+|-+-
T Consensus 198 eVEv~tleea~ea~~~g---aDiI~LD-n~s~---e~l~~av~~~~--~~~~-leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 198 EVEVDTLDQLEEALELG---VDAVLLD-NMTP---DTLREAVAIVA--GRAI-TEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEeC-CCCH---HHHHHHHHHhC--CCce-EEEECCCCHHHHHHHHhcCCCEEE
Confidence 35588999999999753 7999999 4433 23333332221 2233 777888899999999999986553
No 487
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=29.79 E-value=3e+02 Score=26.32 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCH--HHHHHHHHhcccCCCCeEEEEecC
Q 009734 45 QIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG--FALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDG--lelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
..+...+++.||.+..+. +.. ++++.+... .+|-||+- |.... .++++.++. .++|+|++...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~dgii~~---~~~~~~~~~~l~~l~~----~~ipvv~~~~~ 89 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITR--GVDAIIIN---PTDSDAVVPAVKAANE----AGIPVFTIDRE 89 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHc--CCCEEEEc---CCChHHHHHHHHHHHH----CCCcEEEEccC
Confidence 445566777899887753 233 344444443 38987762 22222 356666644 36899988653
No 488
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=29.79 E-value=2.7e+02 Score=26.79 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 45 QIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
..+...+++.||.+.... +..+.++.+.... +|.||+-- ...+ -..++++.. ..+|+|++-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~--vdgii~~~--~~~~-~~~~~~~~~----~~ipvV~~~~ 82 (261)
T cd06272 19 TGINQAISKNGYNMNVSITPSLAEAEDLFKENR--FDGVIIFG--ESAS-DVEYLYKIK----LAIPVVSYGV 82 (261)
T ss_pred HHHHHHHHHcCCEEEEEecccHHHHHHHHHHcC--cCEEEEeC--CCCC-hHHHHHHHH----cCCCEEEEcc
Confidence 455666778899876643 3455666665544 89777632 1222 233455543 3688988743
No 489
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.73 E-value=2.9e+02 Score=26.51 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=35.1
Q ss_pred CceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcC-CCEEE
Q 009734 77 NIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRG-AADYL 134 (527)
Q Consensus 77 ~pDLVLlDl~MP~-------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~G-A~DyL 134 (527)
..|.+|+|..-++ .-++++++.+. ..+||++..+- +.+.+.+++..| ++.+-
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-----~~~PvilaGGI-~~~Nv~~~i~~~~~~gvd 179 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA-----SRKPVILAGGL-TPDNVAEAIRLVRPYGVD 179 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc-----cCCCEEEECCC-ChHHHHHHHHhcCCCEEE
Confidence 3789999986553 23466666664 35798876665 677788888877 65543
No 490
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=29.72 E-value=2.9e+02 Score=29.43 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=43.3
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.|+|||-|... ..+.+...|+..|+++..+. ...++++.++... +|+|| -..|.+-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~II---aiGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVII---ALGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEE---EeCCchHHHHHHH
Confidence 58999987644 33557778888787665442 3556777776654 89887 3556677777776
Q ss_pred HH
Q 009734 99 VM 100 (527)
Q Consensus 99 Lr 100 (527)
+.
T Consensus 99 ia 100 (375)
T cd08194 99 IA 100 (375)
T ss_pred HH
Confidence 64
No 491
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=29.53 E-value=2.6e+02 Score=29.17 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhCCC--EEEE-E---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSY--RVTA-V---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy--~V~~-a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+.++.+-+..|. .+.. + -+.++|++.++.-. .+++.+++--+|. +-++.++.|++. ..+||++--.
T Consensus 174 ~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~-~~~i~~iEqP~~~-~~~~~~~~l~~~---~~ipi~~dE~ 248 (357)
T cd03316 174 EDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALE-EYDLFWFEEPVPP-DDLEGLARLRQA---TSVPIAAGEN 248 (357)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhC-ccCCCeEcCCCCc-cCHHHHHHHHHh---CCCCEEeccc
Confidence 345555555555543 2222 2 26677777766532 3566666655554 346667777665 3688876555
Q ss_pred CCCHHHHHHHHHcCCCEEE-eCCCCHHHH
Q 009734 116 QDSVSTVYKCMMRGAADYL-VKPVRRNEL 143 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL-~KP~~~eeL 143 (527)
..+...+.++++.|+.|++ .||....=+
T Consensus 249 ~~~~~~~~~~i~~~~~d~v~~k~~~~GGi 277 (357)
T cd03316 249 LYTRWEFRDLLEAGAVDIIQPDVTKVGGI 277 (357)
T ss_pred cccHHHHHHHHHhCCCCEEecCccccCCH
Confidence 5678888899998887776 666664333
No 492
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=29.47 E-value=1.9e+02 Score=25.44 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=34.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcC-CCCceEEEEeCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR-PRNIDLILTEVDL 87 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~-~~~pDLVLlDl~M 87 (527)
|+++|.||-| +.+.. -|+-.|.++..+.+.+++.+.++.- ...+.+|++.-.+
T Consensus 2 ~~~kIaVIGD-~dtv~----GFrLaGi~~~~v~~~ee~~~~i~~l~~~d~gII~Ite~~ 55 (104)
T PRK01395 2 TMYKIGVVGD-KDSIL----PFKALGIDVFPVIDEQEAINTLRKLAMEDYGIIYITEQI 55 (104)
T ss_pred cceeEEEEEC-HHHHH----HHHHcCCeeEEecChHHHHHHHHHHhcCCcEEEEEcHHH
Confidence 4578999998 44332 3445688888887777766655431 2348888886433
No 493
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=29.46 E-value=5e+02 Score=25.91 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHhCCCEE--EEECCHHHHHHHHHcCCCCceEEE--Ee-CCCCCCCHHHHHHHHHhccc--CCCCeEEEEecCCCHHH
Q 009734 49 ALLRKSSYRV--TAVPDGLKAWEVLKGRPRNIDLIL--TE-VDLPSISGFALLTLVMEHEI--CKNIPVIMMSSQDSVST 121 (527)
Q Consensus 49 ~lL~~~Gy~V--~~a~dg~eALe~L~~~~~~pDLVL--lD-l~MP~mDGlelL~~Lr~~~~--~~~iPVIilSa~~d~~~ 121 (527)
+.|...|+.+ +.+-+..+|+-..... .+.|= +. +.--+.||+.+++.++..-. ..++ -|+..+.-....
T Consensus 97 ~~L~~~GI~vn~T~vfs~~Qa~~Aa~aG---a~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~t-kILaAS~r~~~~ 172 (220)
T PRK12653 97 KMLKAEGIPTLGTAVYGAAQGLLSALAG---AEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQA-KVLAASFKTPRQ 172 (220)
T ss_pred HHHHHcCCCeeEEEecCHHHHHHHHhcC---CcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCc-EEEEEecCCHHH
Confidence 3467778754 4467888887766543 23322 11 11237799999998876532 2233 444555667888
Q ss_pred HHHHHHcCCCEEEeC
Q 009734 122 VYKCMMRGAADYLVK 136 (527)
Q Consensus 122 ~~~al~~GA~DyL~K 136 (527)
+.+++.+|++-+-+-
T Consensus 173 v~~~~~~G~d~vTip 187 (220)
T PRK12653 173 ALDCLLAGCESITLP 187 (220)
T ss_pred HHHHHHcCCCEEECC
Confidence 888999998766443
No 494
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.37 E-value=1.7e+02 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=48.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC-CC--HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS-IS--GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~-mD--GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al-~~GA~DyL~ 135 (527)
+..+.++.+.... --.++++|+.--+ +. -+++++++++. .++|||.-.+..+.+.+.+++ ..|++..++
T Consensus 153 ~~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 153 DPLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred CHHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 3556666665543 1247888774322 22 36778888764 479999988899999999998 799988753
No 495
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.18 E-value=3.1e+02 Score=29.51 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=40.2
Q ss_pred CceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 77 NIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 77 ~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
.+|+|++|.--..... +++++.|++. +|+++|| .-.....+.+...+.+||+..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~--~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREA--WPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHh--CCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 3899999987765443 6788888764 3677755 455567888888999999965
No 496
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.14 E-value=5.6e+02 Score=26.56 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=55.8
Q ss_pred EecCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHcCCCCceEEEEeCCCC--CC---CHHHHHHHHHhc
Q 009734 37 VEADDSTRQIVTALLRKSSYRVTA-V-----P---DGLKAWEVLKGRPRNIDLILTEVDLP--SI---SGFALLTLVMEH 102 (527)
Q Consensus 37 VDDD~~~r~~L~~lL~~~Gy~V~~-a-----~---dg~eALe~L~~~~~~pDLVLlDl~MP--~m---DGlelL~~Lr~~ 102 (527)
..+-....+.++.+-+..++-|.. . . +..+..+.++... .|.|.+.-..+ +. --++++++|++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G--~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG--AQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC--CCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455555555554455543322 1 1 2334445555443 67776643221 12 237777888764
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHH-HcCCCEEEe
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLV 135 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al-~~GA~DyL~ 135 (527)
.++|||...+-.+.+.+.+++ ..||+..++
T Consensus 191 ---~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 ---VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred ---CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 358999988888999999999 567776643
No 497
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=29.13 E-value=5.6e+02 Score=25.13 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=63.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
...+++|+.+.+. ...+..+.+..+. .|.. .-+..+..+.+.. .|++|.-... +.-|+.+++.+.
T Consensus 232 ~~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~l~~s~~-e~~~~~~~Ea~~----- 300 (374)
T cd03817 232 PDVKLVIVGDGPE-REELEELARELGLADRVIFTGFVPREELPDYYKA----ADLFVFASTT-ETQGLVLLEAMA----- 300 (374)
T ss_pred CCeEEEEEeCCch-HHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHH----cCEEEecccc-cCcChHHHHHHH-----
Confidence 3467777776543 3345555444332 2322 3345666666653 5777764333 334677777763
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
..+|||..- ... ..+.+..|..+++.++.+. ++...+..++..
T Consensus 301 ~g~PvI~~~-~~~---~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~ 343 (374)
T cd03817 301 AGLPVVAVD-APG---LPDLVADGENGFLFPPGDE-ALAEALLRLLQD 343 (374)
T ss_pred cCCcEEEeC-CCC---hhhheecCceeEEeCCCCH-HHHHHHHHHHhC
Confidence 267888533 222 3355567788999999887 788787777643
No 498
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=29.08 E-value=3.8e+02 Score=27.19 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=51.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEEC----C---HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVP----D---GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~----d---g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
..+|.++-..+.+.+.+.+.|+. .|.+++.+. + ..+.++.+.... +|+|++-+.+|...-+ +.+++..
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~--~dil~VglG~PkQE~~--~~~~~~~ 180 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASG--AKIVTVAMGSPKQEIF--MRDCRLV 180 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcC--CCEEEEECCCcHHHHH--HHHHHHh
Confidence 47999999999999999998865 366655432 1 233456666654 9999999999997654 4454433
Q ss_pred ccCCCCeEEE
Q 009734 103 EICKNIPVIM 112 (527)
Q Consensus 103 ~~~~~iPVIi 112 (527)
- ..+|++
T Consensus 181 ~---~~~v~~ 187 (243)
T PRK03692 181 Y---PDALYM 187 (243)
T ss_pred C---CCCEEE
Confidence 1 345554
No 499
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=28.99 E-value=5.8e+02 Score=25.31 Aligned_cols=110 Identities=18% Similarity=0.152 Sum_probs=66.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHcCCCCceEEEEeCC-CCCCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVD-LPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~-MP~mDGlelL~~Lr~~~~~ 105 (527)
..+++|+.+-+. ...+..+++..+. .|... -+..+..+.+.. .|++++-.. ..+.-|+.+++.+..
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~~---- 288 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMAF---- 288 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHHc----
Confidence 367788876543 3455666654443 34443 344555666643 577775321 123446777777742
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+|||..-.....+.+.. .|..+|+..|-+.+++...|..++..
T Consensus 289 -g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 289 -GKPVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred -CCCEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 578886322222222222 47889999999999999999988753
No 500
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.96 E-value=2e+02 Score=24.97 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 40 DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 40 D~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.....+.++..|...|+.+....+.......+... ..-|+||+ +-.++ .+-+++++..++. ++|||.+|...
T Consensus 11 S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~~----g~~vi~iT~~~ 84 (128)
T cd05014 11 SGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKRR----GAPIIAITGNP 84 (128)
T ss_pred hHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHHC----CCeEEEEeCCC
Confidence 34455677777888888877765554332222211 12356555 34444 3456777776553 68999999976
Q ss_pred CHHHHHHHHHcCCCEEEeCCC
Q 009734 118 SVSTVYKCMMRGAADYLVKPV 138 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL~KP~ 138 (527)
+..... .++..|.-|.
T Consensus 85 ~s~la~-----~ad~~l~~~~ 100 (128)
T cd05014 85 NSTLAK-----LSDVVLDLPV 100 (128)
T ss_pred CCchhh-----hCCEEEECCC
Confidence 554432 3566665554
Done!