Query 009734
Match_columns 527
No_of_seqs 316 out of 1816
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:49:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 5.5E-27 1.9E-31 212.4 15.6 127 24-153 6-133 (134)
2 3gl9_A Response regulator; bet 99.9 6.3E-23 2.2E-27 177.8 17.6 121 30-152 1-121 (122)
3 3t6k_A Response regulator rece 99.9 4E-22 1.4E-26 176.0 18.0 123 31-155 4-126 (136)
4 3f6p_A Transcriptional regulat 99.9 6.6E-22 2.3E-26 170.6 16.8 119 30-153 1-119 (120)
5 2lpm_A Two-component response 99.9 2E-24 6.8E-29 193.1 -1.4 115 28-151 5-120 (123)
6 3h1g_A Chemotaxis protein CHEY 99.9 2.9E-21 1E-25 168.2 16.5 122 31-153 5-127 (129)
7 2r25_B Osmosensing histidine p 99.9 5.5E-21 1.9E-25 168.0 16.9 120 31-153 2-127 (133)
8 3gt7_A Sensor protein; structu 99.9 1.1E-20 3.9E-25 170.0 18.7 125 30-156 6-130 (154)
9 1srr_A SPO0F, sporulation resp 99.9 1.1E-20 3.8E-25 162.6 15.9 119 30-152 2-120 (124)
10 3m6m_D Sensory/regulatory prot 99.9 1.5E-20 5.1E-25 167.5 17.0 122 30-153 13-136 (143)
11 3crn_A Response regulator rece 99.9 2.2E-20 7.5E-25 163.3 17.8 120 31-154 3-122 (132)
12 1dbw_A Transcriptional regulat 99.9 3.3E-20 1.1E-24 160.3 18.5 120 31-154 3-122 (126)
13 2pl1_A Transcriptional regulat 99.9 3.5E-20 1.2E-24 158.1 18.4 119 32-154 1-119 (121)
14 3rqi_A Response regulator prot 99.9 3.7E-21 1.3E-25 179.0 13.2 120 31-154 7-126 (184)
15 1zgz_A Torcad operon transcrip 99.9 3.8E-20 1.3E-24 158.5 18.3 120 30-154 1-120 (122)
16 3kht_A Response regulator; PSI 99.8 2E-20 6.7E-25 165.4 16.7 126 29-156 3-131 (144)
17 1tmy_A CHEY protein, TMY; chem 99.8 1.8E-20 6.3E-25 159.9 15.6 118 30-151 1-119 (120)
18 3heb_A Response regulator rece 99.8 4.3E-20 1.5E-24 165.0 18.6 127 30-156 3-138 (152)
19 3lua_A Response regulator rece 99.8 7.8E-21 2.7E-25 167.2 13.2 125 30-156 3-130 (140)
20 3grc_A Sensor protein, kinase; 99.8 1.4E-20 4.9E-25 165.2 14.4 124 31-156 6-130 (140)
21 1jbe_A Chemotaxis protein CHEY 99.8 5.6E-20 1.9E-24 158.7 17.7 122 31-154 4-126 (128)
22 1mb3_A Cell division response 99.8 2E-20 6.8E-25 160.3 14.6 120 32-153 2-121 (124)
23 1p6q_A CHEY2; chemotaxis, sign 99.8 2.2E-20 7.4E-25 161.5 14.9 121 31-153 6-127 (129)
24 3cfy_A Putative LUXO repressor 99.8 2.8E-20 9.7E-25 164.2 15.3 121 30-154 3-123 (137)
25 2jba_A Phosphate regulon trans 99.8 6.7E-21 2.3E-25 164.0 11.0 123 30-154 1-123 (127)
26 3jte_A Response regulator rece 99.8 9.9E-20 3.4E-24 160.4 18.6 124 31-156 3-126 (143)
27 3i42_A Response regulator rece 99.8 1.3E-20 4.6E-25 162.7 12.8 121 31-154 3-123 (127)
28 3kto_A Response regulator rece 99.8 1.7E-20 5.9E-25 164.8 13.6 122 31-156 6-129 (136)
29 3luf_A Two-component system re 99.8 4.1E-20 1.4E-24 182.8 18.0 128 28-156 121-248 (259)
30 3hv2_A Response regulator/HD d 99.8 7.3E-20 2.5E-24 164.0 17.8 121 31-155 14-135 (153)
31 1mvo_A PHOP response regulator 99.8 3.9E-20 1.3E-24 161.3 15.6 122 30-155 2-123 (136)
32 3nhm_A Response regulator; pro 99.8 4.1E-20 1.4E-24 160.5 15.6 123 30-156 3-125 (133)
33 1i3c_A Response regulator RCP1 99.8 9.1E-20 3.1E-24 162.9 18.2 124 31-154 8-138 (149)
34 2a9o_A Response regulator; ess 99.8 7.5E-20 2.6E-24 155.5 16.6 117 32-153 2-118 (120)
35 3eod_A Protein HNR; response r 99.8 4.4E-20 1.5E-24 160.1 15.2 121 30-154 6-127 (130)
36 3hdv_A Response regulator; PSI 99.8 1E-19 3.6E-24 158.9 17.8 124 30-155 6-129 (136)
37 3hdg_A Uncharacterized protein 99.8 4.1E-20 1.4E-24 161.7 15.1 123 30-156 6-128 (137)
38 4e7p_A Response regulator; DNA 99.8 8.4E-20 2.9E-24 163.0 17.3 129 23-155 12-142 (150)
39 1xhf_A DYE resistance, aerobic 99.8 1.4E-19 4.8E-24 155.1 18.0 119 31-154 3-121 (123)
40 3cnb_A DNA-binding response re 99.8 1.5E-19 5E-24 158.3 18.3 125 30-156 7-133 (143)
41 1dz3_A Stage 0 sporulation pro 99.8 4.4E-20 1.5E-24 160.4 14.7 122 30-154 1-124 (130)
42 3ilh_A Two component response 99.8 1.1E-19 3.7E-24 159.7 17.3 123 30-154 8-140 (146)
43 3c3m_A Response regulator rece 99.8 7.1E-20 2.4E-24 161.3 16.1 122 31-154 3-124 (138)
44 1k66_A Phytochrome response re 99.8 1E-19 3.5E-24 160.0 17.1 128 28-155 3-140 (149)
45 3b2n_A Uncharacterized protein 99.8 7.7E-20 2.6E-24 160.1 15.8 121 31-155 3-125 (133)
46 3r0j_A Possible two component 99.8 8.2E-20 2.8E-24 177.9 17.5 122 30-155 22-143 (250)
47 3hzh_A Chemotaxis response reg 99.8 5.6E-20 1.9E-24 166.0 15.1 121 30-152 35-156 (157)
48 1k68_A Phytochrome response re 99.8 2.2E-19 7.4E-24 156.0 18.2 125 31-155 2-133 (140)
49 3n0r_A Response regulator; sig 99.8 1E-20 3.4E-25 190.8 10.8 119 30-155 159-279 (286)
50 2qzj_A Two-component response 99.8 1.2E-19 4E-24 160.1 16.3 119 31-154 4-122 (136)
51 3f6c_A Positive transcription 99.8 3.6E-20 1.2E-24 161.1 12.7 123 31-157 1-124 (134)
52 3h5i_A Response regulator/sens 99.8 4E-20 1.4E-24 163.3 12.7 122 30-155 4-126 (140)
53 2zay_A Response regulator rece 99.8 8.6E-20 2.9E-24 161.5 14.7 125 30-156 7-131 (147)
54 1zh2_A KDP operon transcriptio 99.8 1.4E-19 4.8E-24 154.0 15.4 118 32-154 2-119 (121)
55 3snk_A Response regulator CHEY 99.8 9.5E-21 3.2E-25 166.0 8.1 120 30-153 13-133 (135)
56 3lte_A Response regulator; str 99.8 2.4E-19 8.1E-24 155.5 16.8 122 30-154 5-126 (132)
57 3mm4_A Histidine kinase homolo 99.8 8.9E-20 3.1E-24 173.6 15.3 123 30-154 60-197 (206)
58 3cg4_A Response regulator rece 99.8 5.4E-20 1.9E-24 161.5 12.5 126 29-156 5-130 (142)
59 2qxy_A Response regulator; reg 99.8 2E-19 6.9E-24 158.2 16.0 121 30-155 3-123 (142)
60 1kgs_A DRRD, DNA binding respo 99.8 1.6E-19 5.6E-24 171.4 16.0 123 30-156 1-123 (225)
61 4dad_A Putative pilus assembly 99.8 9.4E-20 3.2E-24 161.4 13.3 121 30-154 19-142 (146)
62 3cu5_A Two component transcrip 99.8 8.8E-20 3E-24 161.8 12.8 121 30-154 1-124 (141)
63 3kcn_A Adenylate cyclase homol 99.8 4.8E-19 1.6E-23 158.3 16.8 122 30-155 3-125 (151)
64 2qr3_A Two-component system re 99.8 5.2E-19 1.8E-23 154.6 16.4 122 31-156 3-129 (140)
65 3n53_A Response regulator rece 99.8 8.9E-20 3E-24 160.4 11.5 123 31-156 3-125 (140)
66 2gkg_A Response regulator homo 99.8 2.2E-19 7.4E-24 153.5 13.5 121 30-153 4-125 (127)
67 3a10_A Response regulator; pho 99.8 1.9E-19 6.5E-24 152.7 12.5 114 32-151 2-115 (116)
68 3cg0_A Response regulator rece 99.8 6.1E-19 2.1E-23 154.1 16.0 122 30-156 8-131 (140)
69 1yio_A Response regulatory pro 99.8 2.4E-19 8.1E-24 168.6 14.1 120 31-154 4-123 (208)
70 1a04_A Nitrate/nitrite respons 99.8 6.9E-19 2.4E-23 166.5 17.3 122 30-155 4-127 (215)
71 3eq2_A Probable two-component 99.8 1.2E-19 4.3E-24 188.7 13.1 124 27-154 1-125 (394)
72 2rjn_A Response regulator rece 99.8 1.3E-18 4.5E-23 155.6 17.8 121 31-155 7-128 (154)
73 3eul_A Possible nitrate/nitrit 99.8 9.6E-19 3.3E-23 156.2 16.7 123 30-156 14-138 (152)
74 3cz5_A Two-component response 99.8 6.5E-19 2.2E-23 157.4 15.6 122 30-155 4-127 (153)
75 3dzd_A Transcriptional regulat 99.8 2.1E-19 7.1E-24 187.6 14.2 120 32-155 1-120 (368)
76 2ayx_A Sensor kinase protein R 99.8 4E-19 1.4E-23 174.8 15.4 120 31-154 129-248 (254)
77 1dcf_A ETR1 protein; beta-alph 99.8 1.1E-18 3.7E-23 152.7 16.0 121 31-154 7-130 (136)
78 1s8n_A Putative antiterminator 99.8 4E-19 1.4E-23 167.2 14.3 120 30-154 12-132 (205)
79 2qvg_A Two component response 99.8 1.1E-18 3.8E-23 153.4 15.8 121 31-151 7-133 (143)
80 3q9s_A DNA-binding response re 99.8 6E-19 2E-23 172.9 15.4 120 31-155 37-156 (249)
81 1qkk_A DCTD, C4-dicarboxylate 99.8 1.5E-18 5.2E-23 155.4 15.7 121 31-155 3-123 (155)
82 2jk1_A HUPR, hydrogenase trans 99.8 2.6E-18 9E-23 151.1 16.7 118 32-154 2-120 (139)
83 1w25_A Stalked-cell differenti 99.8 1.1E-18 3.7E-23 184.5 16.6 121 32-154 2-122 (459)
84 2gwr_A DNA-binding response re 99.8 5.6E-19 1.9E-23 170.5 12.8 122 28-154 2-123 (238)
85 2oqr_A Sensory transduction pr 99.8 9.3E-19 3.2E-23 167.0 13.8 120 30-154 3-122 (230)
86 2qv0_A Protein MRKE; structura 99.8 4.7E-18 1.6E-22 149.6 16.3 121 29-155 7-129 (143)
87 2rdm_A Response regulator rece 99.8 4.6E-18 1.6E-22 147.1 15.9 121 30-155 4-125 (132)
88 1ys7_A Transcriptional regulat 99.8 1.2E-18 4E-23 166.4 13.3 121 31-155 7-127 (233)
89 1p2f_A Response regulator; DRR 99.8 2.4E-18 8.3E-23 163.3 15.0 118 30-154 1-118 (220)
90 3eqz_A Response regulator; str 99.8 7.6E-19 2.6E-23 152.3 10.4 119 31-154 3-126 (135)
91 1ny5_A Transcriptional regulat 99.8 2.6E-18 8.8E-23 180.3 16.3 119 32-154 1-119 (387)
92 2qsj_A DNA-binding response re 99.8 2.1E-18 7.3E-23 154.0 12.9 122 31-156 3-127 (154)
93 3c97_A Signal transduction his 99.8 2.2E-18 7.5E-23 151.8 12.4 120 30-154 9-131 (140)
94 3t8y_A CHEB, chemotaxis respon 99.8 5.8E-18 2E-22 154.3 15.0 128 21-153 12-155 (164)
95 2pln_A HP1043, response regula 99.8 1.3E-17 4.5E-22 146.0 16.4 118 28-154 15-134 (137)
96 3bre_A Probable two-component 99.8 2.9E-18 1E-22 174.7 13.2 120 31-152 18-138 (358)
97 2j48_A Two-component sensor ki 99.8 3E-18 1E-22 143.7 10.9 115 32-151 2-116 (119)
98 3c3w_A Two component transcrip 99.7 1.2E-18 4.1E-23 167.3 8.0 121 31-155 1-123 (225)
99 3sy8_A ROCR; TIM barrel phosph 99.7 4.7E-18 1.6E-22 178.0 13.1 149 31-184 3-158 (400)
100 3klo_A Transcriptional regulat 99.7 1.4E-18 4.7E-23 166.4 8.1 123 30-155 6-131 (225)
101 3kyj_B CHEY6 protein, putative 99.7 6.4E-18 2.2E-22 149.7 11.4 114 30-147 12-129 (145)
102 2b4a_A BH3024; flavodoxin-like 99.7 5E-18 1.7E-22 148.8 9.2 123 23-153 7-131 (138)
103 1dc7_A NTRC, nitrogen regulati 99.7 2.1E-19 7.1E-24 153.3 -0.5 120 31-154 3-122 (124)
104 1qo0_D AMIR; binding protein, 99.7 1.5E-17 5.1E-22 155.4 11.0 116 30-154 11-126 (196)
105 2hqr_A Putative transcriptiona 99.7 6.3E-17 2.1E-21 153.9 14.4 115 32-154 1-116 (223)
106 3luf_A Two-component system re 99.7 1.9E-16 6.6E-21 156.4 9.9 104 31-141 4-108 (259)
107 1a2o_A CHEB methylesterase; ba 99.7 9.8E-16 3.3E-20 158.9 15.6 119 31-154 3-134 (349)
108 2vyc_A Biodegradative arginine 99.6 6.3E-16 2.1E-20 175.2 9.8 120 32-154 1-134 (755)
109 1w25_A Stalked-cell differenti 99.2 1.1E-10 3.6E-15 123.3 17.0 161 31-209 152-312 (459)
110 3cwo_X Beta/alpha-barrel prote 99.1 6.4E-11 2.2E-15 112.4 6.9 93 57-153 7-101 (237)
111 3n75_A LDC, lysine decarboxyla 97.2 0.00034 1.1E-08 79.0 7.0 105 44-154 19-124 (715)
112 2ayx_A Sensor kinase protein R 97.1 0.00044 1.5E-08 67.2 5.9 95 31-152 11-105 (254)
113 3q7r_A Transcriptional regulat 96.9 0.0023 7.9E-08 54.8 7.7 108 30-154 11-119 (121)
114 3cwo_X Beta/alpha-barrel prote 96.3 0.0095 3.3E-07 55.7 7.9 82 63-148 131-221 (237)
115 2yxb_A Coenzyme B12-dependent 95.5 0.31 1.1E-05 44.5 14.4 119 31-153 18-145 (161)
116 1wv2_A Thiazole moeity, thiazo 92.2 1.1 3.7E-05 44.5 11.5 101 44-151 124-236 (265)
117 1ccw_A Protein (glutamate muta 92.1 1.7 5.8E-05 38.4 11.8 108 39-150 15-133 (137)
118 3q58_A N-acetylmannosamine-6-p 92.0 0.98 3.4E-05 43.6 11.0 98 32-136 102-210 (229)
119 1y80_A Predicted cobalamin bin 91.8 0.7 2.4E-05 43.5 9.4 101 31-136 88-197 (210)
120 3kp1_A D-ornithine aminomutase 90.8 2 7E-05 47.6 12.8 124 26-154 597-736 (763)
121 3igs_A N-acetylmannosamine-6-p 90.6 1.7 5.8E-05 42.0 11.1 89 41-136 115-210 (232)
122 3qja_A IGPS, indole-3-glycerol 89.2 5 0.00017 39.7 13.4 100 32-136 137-242 (272)
123 2i2x_B MTAC, methyltransferase 89.0 3 0.0001 40.7 11.6 111 31-151 123-242 (258)
124 3ezx_A MMCP 1, monomethylamine 88.8 1.3 4.3E-05 42.4 8.4 101 31-136 92-203 (215)
125 1xrs_B D-lysine 5,6-aminomutas 88.5 4.3 0.00015 40.2 12.3 116 31-151 120-256 (262)
126 2htm_A Thiazole biosynthesis p 86.1 1.4 4.9E-05 43.7 7.2 98 48-151 117-227 (268)
127 3tsm_A IGPS, indole-3-glycerol 82.6 12 0.00042 37.0 12.3 99 33-136 145-249 (272)
128 3fkq_A NTRC-like two-domain pr 81.5 2.7 9.2E-05 42.9 7.3 107 27-151 17-126 (373)
129 3f4w_A Putative hexulose 6 pho 81.1 13 0.00043 34.4 11.2 114 32-150 78-206 (211)
130 3ffs_A Inosine-5-monophosphate 80.9 19 0.00065 37.7 13.5 103 31-136 156-275 (400)
131 3rht_A (gatase1)-like protein; 79.0 1.4 4.7E-05 43.6 3.9 81 31-117 4-89 (259)
132 1yad_A Regulatory protein TENI 78.2 14 0.00047 34.6 10.6 74 55-135 110-191 (221)
133 3o63_A Probable thiamine-phosp 78.2 15 0.0005 35.7 11.0 87 60-151 141-239 (243)
134 2xij_A Methylmalonyl-COA mutas 77.8 16 0.00054 41.4 12.4 120 31-154 604-732 (762)
135 1r8j_A KAIA; circadian clock p 77.5 14 0.00047 36.8 10.4 84 29-116 7-90 (289)
136 1req_A Methylmalonyl-COA mutas 76.9 14 0.00048 41.6 11.6 118 31-152 596-722 (727)
137 2bfw_A GLGA glycogen synthase; 76.8 39 0.0013 29.8 13.0 106 31-152 70-179 (200)
138 4fo4_A Inosine 5'-monophosphat 76.7 27 0.00091 36.0 13.0 103 30-136 119-240 (366)
139 1xi3_A Thiamine phosphate pyro 76.1 19 0.00066 32.9 10.8 75 54-135 107-189 (215)
140 2bdq_A Copper homeostasis prot 75.9 8.2 0.00028 37.4 8.3 120 2-136 66-207 (224)
141 2q5c_A NTRC family transcripti 75.5 49 0.0017 30.7 13.5 54 30-83 3-57 (196)
142 2ekc_A AQ_1548, tryptophan syn 75.4 10 0.00035 37.0 9.0 57 92-150 81-143 (262)
143 1xm3_A Thiazole biosynthesis p 72.4 6.8 0.00023 38.3 7.0 76 55-136 126-207 (264)
144 2gek_A Phosphatidylinositol ma 72.2 28 0.00094 34.3 11.5 108 31-153 240-349 (406)
145 2oo3_A Protein involved in cat 71.6 7.2 0.00025 39.0 6.9 71 31-101 113-184 (283)
146 3fwz_A Inner membrane protein 71.1 35 0.0012 29.2 10.6 96 27-134 26-123 (140)
147 2gjl_A Hypothetical protein PA 70.6 39 0.0013 33.6 12.3 83 48-136 111-201 (328)
148 4gud_A Imidazole glycerol phos 70.0 9.8 0.00033 35.2 7.2 46 30-83 1-46 (211)
149 4a29_A Engineered retro-aldol 69.6 73 0.0025 31.3 13.5 99 33-136 129-233 (258)
150 3khj_A Inosine-5-monophosphate 69.2 35 0.0012 34.9 11.8 102 31-136 117-236 (361)
151 3s83_A Ggdef family protein; s 69.1 11 0.00039 35.8 7.6 101 46-149 143-254 (259)
152 2v82_A 2-dehydro-3-deoxy-6-pho 69.1 8.9 0.0003 35.6 6.7 79 49-136 95-176 (212)
153 3iwp_A Copper homeostasis prot 69.0 13 0.00046 37.2 8.2 124 2-135 101-237 (287)
154 3bo9_A Putative nitroalkan dio 68.7 31 0.001 34.6 11.0 83 48-136 117-205 (326)
155 3vnd_A TSA, tryptophan synthas 68.7 8.7 0.0003 38.0 6.8 56 93-150 83-144 (267)
156 1thf_D HISF protein; thermophI 68.3 39 0.0013 31.9 11.2 79 64-147 153-241 (253)
157 3usb_A Inosine-5'-monophosphat 68.0 77 0.0026 33.9 14.6 105 29-136 266-388 (511)
158 2v5j_A 2,4-dihydroxyhept-2-ENE 67.4 77 0.0026 31.3 13.5 99 47-149 30-132 (287)
159 3beo_A UDP-N-acetylglucosamine 66.8 76 0.0026 30.7 13.3 101 31-152 238-341 (375)
160 3fro_A GLGA glycogen synthase; 66.4 60 0.0021 32.0 12.7 107 30-152 284-394 (439)
161 1ka9_F Imidazole glycerol phos 66.0 39 0.0013 31.8 10.7 77 65-147 155-242 (252)
162 1qop_A Tryptophan synthase alp 65.6 14 0.00047 36.1 7.5 57 92-150 81-143 (268)
163 3bul_A Methionine synthase; tr 65.4 22 0.00077 38.9 9.8 100 31-136 98-211 (579)
164 1y0e_A Putative N-acetylmannos 65.3 43 0.0015 30.9 10.7 87 44-136 107-204 (223)
165 3bw2_A 2-nitropropane dioxygen 65.1 60 0.0021 32.8 12.6 78 52-135 142-236 (369)
166 1ka9_F Imidazole glycerol phos 65.1 25 0.00084 33.3 9.1 69 63-136 32-104 (252)
167 4e5v_A Putative THUA-like prot 65.1 11 0.00038 37.3 6.8 80 30-114 3-93 (281)
168 2w6r_A Imidazole glycerol phos 65.1 21 0.00073 34.0 8.7 67 64-136 158-229 (266)
169 2vws_A YFAU, 2-keto-3-deoxy su 64.8 1E+02 0.0036 29.8 13.7 100 47-150 9-112 (267)
170 3qz6_A HPCH/HPAI aldolase; str 64.5 55 0.0019 31.8 11.6 101 47-150 6-110 (261)
171 1h1y_A D-ribulose-5-phosphate 64.3 49 0.0017 31.1 11.0 86 48-136 106-201 (228)
172 1qo2_A Molecule: N-((5-phospho 64.0 45 0.0015 31.4 10.7 77 63-145 145-238 (241)
173 1eep_A Inosine 5'-monophosphat 63.7 72 0.0025 32.7 13.0 92 41-135 179-284 (404)
174 2z6i_A Trans-2-enoyl-ACP reduc 63.7 48 0.0016 33.1 11.3 80 50-135 105-190 (332)
175 4eyg_A Twin-arginine transloca 63.7 58 0.002 31.6 11.8 85 32-120 140-236 (368)
176 1twd_A Copper homeostasis prot 63.6 25 0.00084 34.7 8.8 117 2-134 63-196 (256)
177 3u3x_A Oxidoreductase; structu 63.1 21 0.0007 36.1 8.5 113 21-151 18-136 (361)
178 3ezy_A Dehydrogenase; structur 63.0 26 0.00089 34.8 9.2 107 30-152 1-113 (344)
179 2fhp_A Methylase, putative; al 63.0 55 0.0019 28.5 10.5 73 28-100 64-139 (187)
180 3ovp_A Ribulose-phosphate 3-ep 62.7 12 0.0004 35.9 6.3 85 46-136 103-197 (228)
181 4dzz_A Plasmid partitioning pr 62.6 14 0.00048 33.2 6.5 70 26-100 25-96 (206)
182 4eg0_A D-alanine--D-alanine li 62.4 25 0.00084 34.5 8.8 57 28-86 10-74 (317)
183 1geq_A Tryptophan synthase alp 62.4 18 0.00061 34.3 7.5 53 92-147 68-126 (248)
184 2c6q_A GMP reductase 2; TIM ba 62.2 1.2E+02 0.0039 30.8 14.0 104 31-138 132-255 (351)
185 1geq_A Tryptophan synthase alp 62.1 36 0.0012 32.1 9.6 98 32-136 109-220 (248)
186 3usb_A Inosine-5'-monophosphat 61.6 28 0.00097 37.3 9.6 68 63-135 256-324 (511)
187 3mz0_A Inositol 2-dehydrogenas 61.2 72 0.0025 31.5 12.1 107 30-152 1-115 (344)
188 2lci_A Protein OR36; structura 60.7 20 0.0007 30.2 6.4 38 35-72 81-118 (134)
189 3sc6_A DTDP-4-dehydrorhamnose 59.8 22 0.00074 33.7 7.6 81 30-116 4-107 (287)
190 3ec7_A Putative dehydrogenase; 59.3 45 0.0015 33.4 10.3 111 29-153 21-137 (357)
191 1rzu_A Glycogen synthase 1; gl 59.3 89 0.0031 31.7 12.7 107 31-151 320-438 (485)
192 1j8m_F SRP54, signal recogniti 58.8 21 0.00073 35.3 7.6 57 27-85 122-188 (297)
193 3c48_A Predicted glycosyltrans 58.8 57 0.002 32.5 10.9 109 31-153 276-391 (438)
194 3l9w_A Glutathione-regulated p 58.3 29 0.001 36.1 8.8 99 27-136 23-122 (413)
195 4avf_A Inosine-5'-monophosphat 58.3 1.3E+02 0.0044 31.9 14.0 102 31-136 241-361 (490)
196 2xxa_A Signal recognition part 58.2 23 0.00079 37.2 8.0 53 31-85 129-191 (433)
197 2qzs_A Glycogen synthase; glyc 58.1 80 0.0027 32.1 12.1 107 31-151 321-439 (485)
198 2f9f_A First mannosyl transfer 58.0 62 0.0021 28.3 9.9 108 31-154 50-163 (177)
199 1vzw_A Phosphoribosyl isomeras 57.8 43 0.0015 31.5 9.3 78 63-146 147-238 (244)
200 1ep3_A Dihydroorotate dehydrog 57.6 57 0.0019 31.7 10.4 104 44-152 153-292 (311)
201 3l4e_A Uncharacterized peptida 57.4 39 0.0013 31.7 8.7 64 31-102 27-100 (206)
202 2qfm_A Spermine synthase; sper 57.2 44 0.0015 34.5 9.7 70 30-99 210-296 (364)
203 3ic5_A Putative saccharopine d 57.2 35 0.0012 27.3 7.5 54 30-86 4-58 (118)
204 3p9n_A Possible methyltransfer 57.1 58 0.002 28.8 9.6 86 27-114 63-153 (189)
205 3rc1_A Sugar 3-ketoreductase; 56.9 54 0.0018 32.8 10.3 108 28-152 24-138 (350)
206 2fpo_A Methylase YHHF; structu 56.4 61 0.0021 29.4 9.8 70 29-101 75-146 (202)
207 4avf_A Inosine-5'-monophosphat 56.4 26 0.00089 37.4 8.2 68 63-135 229-297 (490)
208 3ia7_A CALG4; glycosysltransfe 56.3 27 0.00093 34.4 7.9 16 47-62 24-39 (402)
209 2iw1_A Lipopolysaccharide core 56.2 48 0.0016 32.1 9.6 107 31-153 228-337 (374)
210 4hkt_A Inositol 2-dehydrogenas 56.1 60 0.0021 31.8 10.4 105 30-152 2-112 (331)
211 3ohs_X Trans-1,2-dihydrobenzen 55.3 39 0.0013 33.3 8.9 108 30-153 1-116 (334)
212 4adt_A Pyridoxine biosynthetic 55.3 85 0.0029 31.3 11.3 87 59-151 130-258 (297)
213 2tps_A Protein (thiamin phosph 54.7 66 0.0022 29.6 9.9 69 61-135 123-199 (227)
214 3r2g_A Inosine 5'-monophosphat 54.4 1.2E+02 0.0042 31.1 12.5 99 30-136 111-228 (361)
215 3qhp_A Type 1 capsular polysac 53.6 47 0.0016 28.3 8.2 108 30-153 31-140 (166)
216 2fli_A Ribulose-phosphate 3-ep 52.1 22 0.00077 32.8 6.1 86 46-135 100-197 (220)
217 1h5y_A HISF; histidine biosynt 51.4 54 0.0018 30.4 8.7 69 62-135 33-105 (253)
218 1h5y_A HISF; histidine biosynt 51.3 70 0.0024 29.6 9.5 79 64-147 156-244 (253)
219 1vgv_A UDP-N-acetylglucosamine 51.3 80 0.0027 30.7 10.4 101 31-152 238-341 (384)
220 2y88_A Phosphoribosyl isomeras 51.1 36 0.0012 31.9 7.5 76 64-145 151-240 (244)
221 1i4n_A Indole-3-glycerol phosp 51.0 97 0.0033 30.1 10.6 90 42-136 137-230 (251)
222 2p10_A MLL9387 protein; putati 50.5 77 0.0026 31.7 9.9 82 52-136 160-259 (286)
223 2xci_A KDO-transferase, 3-deox 50.4 59 0.002 32.6 9.4 111 31-153 225-346 (374)
224 3snr_A Extracellular ligand-bi 50.3 67 0.0023 30.8 9.5 86 32-123 136-232 (362)
225 2jjm_A Glycosyl transferase, g 50.1 28 0.00097 34.4 6.9 108 31-153 241-350 (394)
226 3nav_A Tryptophan synthase alp 50.1 18 0.00061 35.8 5.3 56 91-148 83-144 (271)
227 2w6r_A Imidazole glycerol phos 50.0 36 0.0012 32.4 7.4 69 63-136 31-103 (266)
228 2gk3_A Putative cytoplasmic pr 49.9 25 0.00087 33.9 6.3 63 46-116 44-127 (256)
229 4had_A Probable oxidoreductase 49.9 38 0.0013 33.5 7.8 112 24-151 16-134 (350)
230 3jy6_A Transcriptional regulat 49.7 66 0.0023 30.0 9.1 63 44-116 26-94 (276)
231 3inp_A D-ribulose-phosphate 3- 49.5 26 0.00089 34.1 6.3 86 47-136 126-223 (246)
232 1zh8_A Oxidoreductase; TM0312, 49.5 66 0.0023 31.9 9.5 106 30-151 17-130 (340)
233 1jcn_A Inosine monophosphate d 49.4 1.1E+02 0.0037 32.5 11.7 102 31-138 267-390 (514)
234 1rd5_A Tryptophan synthase alp 49.1 29 0.00099 33.3 6.5 42 92-136 189-230 (262)
235 3e9m_A Oxidoreductase, GFO/IDH 49.0 42 0.0014 33.1 7.9 109 30-152 4-116 (330)
236 1yxy_A Putative N-acetylmannos 48.6 80 0.0027 29.4 9.5 85 44-136 121-215 (234)
237 1dxe_A 2-dehydro-3-deoxy-galac 48.5 1.9E+02 0.0065 27.7 13.6 100 47-149 10-112 (256)
238 1f0k_A MURG, UDP-N-acetylgluco 48.0 50 0.0017 32.0 8.2 32 30-61 5-40 (364)
239 1uf3_A Hypothetical protein TT 47.9 38 0.0013 30.5 6.9 70 27-119 1-75 (228)
240 1v4v_A UDP-N-acetylglucosamine 47.7 1.5E+02 0.005 28.8 11.7 101 31-152 230-333 (376)
241 1thf_D HISF protein; thermophI 47.4 81 0.0028 29.6 9.4 69 63-136 31-103 (253)
242 1qdl_B Protein (anthranilate s 47.4 8.8 0.0003 35.3 2.4 48 34-83 4-51 (195)
243 1pii_A N-(5'phosphoribosyl)ant 47.1 1.1E+02 0.0039 32.2 11.2 94 43-142 145-247 (452)
244 1wa3_A 2-keto-3-deoxy-6-phosph 46.5 29 0.00098 31.8 5.8 65 63-135 113-177 (205)
245 2ho3_A Oxidoreductase, GFO/IDH 46.5 1.1E+02 0.0038 29.8 10.5 103 32-151 2-110 (325)
246 3td9_A Branched chain amino ac 46.2 1.1E+02 0.0036 29.8 10.3 85 32-122 150-245 (366)
247 1sui_A Caffeoyl-COA O-methyltr 45.7 1.4E+02 0.0046 28.2 10.7 69 31-101 104-178 (247)
248 1ws6_A Methyltransferase; stru 45.7 90 0.0031 26.5 8.7 71 29-100 61-132 (171)
249 1vc4_A Indole-3-glycerol phosp 45.7 26 0.0009 34.0 5.6 98 32-136 130-236 (254)
250 2nvw_A Galactose/lactose metab 45.6 62 0.0021 34.2 9.0 123 14-151 21-162 (479)
251 3m2p_A UDP-N-acetylglucosamine 45.5 1.1E+02 0.0038 29.1 10.2 32 30-61 1-32 (311)
252 1rd5_A Tryptophan synthase alp 45.0 41 0.0014 32.2 6.9 55 92-150 82-139 (262)
253 2fn9_A Ribose ABC transporter, 44.9 1.4E+02 0.0047 27.8 10.6 67 43-116 20-92 (290)
254 1hyq_A MIND, cell division inh 44.4 11 0.00036 35.7 2.5 16 26-41 26-41 (263)
255 4fxs_A Inosine-5'-monophosphat 44.2 2.8E+02 0.0094 29.4 13.8 102 31-136 243-363 (496)
256 3sgz_A Hydroxyacid oxidase 2; 44.2 1.4E+02 0.0049 30.4 11.1 88 45-136 207-301 (352)
257 4e38_A Keto-hydroxyglutarate-a 43.9 36 0.0012 32.9 6.2 93 48-148 28-124 (232)
258 3okp_A GDP-mannose-dependent a 43.8 60 0.002 31.5 8.0 107 31-152 229-343 (394)
259 4fxs_A Inosine-5'-monophosphat 43.5 54 0.0018 34.9 8.1 66 64-135 233-299 (496)
260 2r6o_A Putative diguanylate cy 43.1 56 0.0019 32.1 7.6 102 45-149 166-278 (294)
261 3m2t_A Probable dehydrogenase; 42.4 46 0.0016 33.4 7.1 107 31-152 5-117 (359)
262 2px0_A Flagellar biosynthesis 42.3 53 0.0018 32.3 7.4 60 30-92 133-195 (296)
263 2yw3_A 4-hydroxy-2-oxoglutarat 42.0 84 0.0029 29.3 8.4 91 52-152 101-199 (207)
264 3tdn_A FLR symmetric alpha-bet 41.9 67 0.0023 30.3 7.8 68 63-135 36-107 (247)
265 1p0k_A Isopentenyl-diphosphate 41.9 2.7E+02 0.0093 27.6 12.9 46 89-136 235-280 (349)
266 1ka9_H Imidazole glycerol phos 41.6 26 0.00089 32.1 4.7 34 30-63 1-34 (200)
267 3gjy_A Spermidine synthase; AP 41.2 71 0.0024 32.1 8.2 71 30-102 112-189 (317)
268 1jvn_A Glutamine, bifunctional 41.0 1.4E+02 0.0047 32.3 10.9 78 65-148 455-544 (555)
269 3k4h_A Putative transcriptiona 40.7 71 0.0024 29.8 7.8 65 43-116 31-101 (292)
270 1gox_A (S)-2-hydroxy-acid oxid 40.5 1.6E+02 0.0053 30.0 10.8 88 45-136 215-309 (370)
271 1tqx_A D-ribulose-5-phosphate 40.3 45 0.0015 31.9 6.3 83 50-136 109-201 (227)
272 2yxd_A Probable cobalt-precorr 40.2 1.7E+02 0.0059 24.8 11.9 79 25-114 51-131 (183)
273 3tsa_A SPNG, NDP-rhamnosyltran 40.2 41 0.0014 33.2 6.2 72 31-113 1-141 (391)
274 3qk7_A Transcriptional regulat 40.1 88 0.003 29.5 8.4 64 44-116 29-97 (294)
275 1qop_A Tryptophan synthase alp 40.1 93 0.0032 30.0 8.6 96 34-136 126-234 (268)
276 1iow_A DD-ligase, DDLB, D-ALA\ 40.0 16 0.00056 35.0 3.1 54 30-85 1-62 (306)
277 2ydy_A Methionine adenosyltran 40.0 90 0.0031 29.7 8.5 33 30-62 1-33 (315)
278 2p9j_A Hypothetical protein AQ 39.8 1.6E+02 0.0056 24.9 9.5 41 93-137 42-82 (162)
279 3i45_A Twin-arginine transloca 39.8 1.4E+02 0.0049 29.1 10.3 80 32-115 143-235 (387)
280 1izc_A Macrophomate synthase i 39.8 2.5E+02 0.0085 28.3 12.1 87 61-150 50-139 (339)
281 1wa3_A 2-keto-3-deoxy-6-phosph 39.7 2.1E+02 0.0073 25.7 10.9 66 78-148 36-101 (205)
282 1i1q_B Anthranilate synthase c 39.7 34 0.0012 31.1 5.1 51 32-83 1-54 (192)
283 4gnr_A ABC transporter substra 39.5 1.7E+02 0.0059 28.1 10.6 88 33-126 146-241 (353)
284 1z0s_A Probable inorganic poly 39.5 17 0.00059 36.1 3.2 93 32-152 30-122 (278)
285 3q9l_A Septum site-determining 39.4 18 0.0006 33.9 3.2 19 23-41 23-41 (260)
286 3u81_A Catechol O-methyltransf 39.4 68 0.0023 29.3 7.3 59 31-89 83-146 (221)
287 4fzr_A SSFS6; structural genom 39.4 58 0.002 32.3 7.2 76 28-114 12-151 (398)
288 1g3q_A MIND ATPase, cell divis 39.4 13 0.00044 34.4 2.2 18 25-42 25-42 (237)
289 3lkb_A Probable branched-chain 39.3 1.1E+02 0.0039 29.9 9.4 85 32-122 144-239 (392)
290 3r2g_A Inosine 5'-monophosphat 39.2 85 0.0029 32.2 8.5 66 65-135 102-168 (361)
291 2r60_A Glycosyl transferase, g 39.0 1.4E+02 0.0048 30.5 10.3 95 44-152 321-423 (499)
292 3sr7_A Isopentenyl-diphosphate 38.9 1.8E+02 0.0063 29.7 11.0 86 45-136 196-307 (365)
293 1rpx_A Protein (ribulose-phosp 38.8 29 0.00098 32.5 4.6 58 78-136 141-207 (230)
294 3oqb_A Oxidoreductase; structu 38.7 74 0.0025 31.9 8.0 38 115-152 93-132 (383)
295 3iwp_A Copper homeostasis prot 38.5 1.3E+02 0.0043 30.1 9.3 89 56-150 40-151 (287)
296 3db2_A Putative NADPH-dependen 38.4 86 0.0029 31.1 8.3 106 30-152 4-115 (354)
297 1tqj_A Ribulose-phosphate 3-ep 38.2 54 0.0018 31.1 6.4 87 46-136 103-201 (230)
298 4fyk_A Deoxyribonucleoside 5'- 38.1 1.6E+02 0.0054 26.5 9.1 112 31-153 2-142 (152)
299 3ius_A Uncharacterized conserv 38.1 26 0.00089 33.1 4.2 32 30-62 4-35 (286)
300 3oti_A CALG3; calicheamicin, T 38.1 67 0.0023 31.9 7.5 31 31-61 20-54 (398)
301 2qjg_A Putative aldolase MJ040 38.1 2E+02 0.0068 27.3 10.6 75 69-152 173-258 (273)
302 2iuy_A Avigt4, glycosyltransfe 37.9 86 0.0029 30.1 8.1 57 31-89 3-96 (342)
303 3o07_A Pyridoxine biosynthesis 37.9 57 0.0019 32.7 6.6 59 92-153 186-251 (291)
304 3e18_A Oxidoreductase; dehydro 37.9 81 0.0028 31.5 8.1 105 31-152 5-114 (359)
305 1vrd_A Inosine-5'-monophosphat 37.9 3E+02 0.01 28.7 12.8 102 31-135 249-368 (494)
306 3h5l_A Putative branched-chain 37.8 93 0.0032 31.0 8.5 85 32-121 165-260 (419)
307 3p3v_A PTS system, N-acetylgal 37.7 70 0.0024 29.1 6.8 57 13-73 15-74 (163)
308 3i23_A Oxidoreductase, GFO/IDH 37.6 43 0.0015 33.3 6.0 108 30-152 1-114 (349)
309 2nli_A Lactate oxidase; flavoe 37.6 1.6E+02 0.0055 30.0 10.4 90 43-136 217-313 (368)
310 3rot_A ABC sugar transporter, 37.6 77 0.0026 29.9 7.5 66 44-116 22-95 (297)
311 1o2d_A Alcohol dehydrogenase, 37.6 60 0.0021 33.0 7.1 79 31-114 40-147 (371)
312 3evn_A Oxidoreductase, GFO/IDH 37.1 40 0.0014 33.2 5.6 107 30-152 4-116 (329)
313 1qpo_A Quinolinate acid phosph 37.1 1.2E+02 0.004 30.1 8.9 95 34-135 168-268 (284)
314 2gjl_A Hypothetical protein PA 37.0 2.4E+02 0.0083 27.7 11.4 62 63-136 84-145 (328)
315 2ift_A Putative methylase HI07 37.0 69 0.0023 29.0 6.8 73 27-101 72-149 (201)
316 3ceu_A Thiamine phosphate pyro 37.0 39 0.0013 31.4 5.2 70 60-135 94-171 (210)
317 3euw_A MYO-inositol dehydrogen 36.9 1.8E+02 0.0063 28.4 10.5 103 31-150 4-112 (344)
318 3l0g_A Nicotinate-nucleotide p 36.7 52 0.0018 33.1 6.2 66 58-133 211-276 (300)
319 3ajx_A 3-hexulose-6-phosphate 36.6 26 0.00088 32.1 3.8 82 63-149 11-98 (207)
320 3dr5_A Putative O-methyltransf 36.5 46 0.0016 31.0 5.6 78 31-114 81-162 (221)
321 3tfw_A Putative O-methyltransf 36.4 1.3E+02 0.0046 28.0 9.0 80 31-115 88-170 (248)
322 3moi_A Probable dehydrogenase; 36.3 57 0.002 33.0 6.7 106 30-152 1-113 (387)
323 3p9z_A Uroporphyrinogen III co 36.2 2.3E+02 0.008 26.2 10.6 107 31-150 110-224 (229)
324 1x1o_A Nicotinate-nucleotide p 36.1 2.4E+02 0.0083 27.8 11.0 92 34-135 169-267 (286)
325 3pfn_A NAD kinase; structural 36.0 41 0.0014 34.7 5.5 112 19-154 30-165 (365)
326 2avd_A Catechol-O-methyltransf 35.9 1.6E+02 0.0056 26.5 9.3 69 31-101 94-167 (229)
327 3d54_D Phosphoribosylformylgly 35.9 29 0.00099 31.8 4.0 46 30-83 1-47 (213)
328 3c6k_A Spermine synthase; sper 35.8 83 0.0028 32.6 7.8 59 30-88 227-295 (381)
329 3l49_A ABC sugar (ribose) tran 35.5 1.8E+02 0.0063 26.8 9.8 67 43-116 23-95 (291)
330 1f0k_A MURG, UDP-N-acetylgluco 35.3 1E+02 0.0035 29.7 8.2 103 31-150 212-322 (364)
331 3bbl_A Regulatory protein of L 35.2 1.6E+02 0.0054 27.5 9.3 66 42-116 25-96 (287)
332 4hjf_A Ggdef family protein; s 35.2 58 0.002 32.7 6.4 105 44-151 214-329 (340)
333 1k1e_A Deoxy-D-mannose-octulos 35.1 2.3E+02 0.0078 24.8 10.1 48 93-144 41-88 (180)
334 3q2i_A Dehydrogenase; rossmann 34.8 76 0.0026 31.5 7.2 106 30-152 12-124 (354)
335 3kux_A Putative oxidoreductase 34.7 1.4E+02 0.0047 29.6 9.2 105 31-152 7-116 (352)
336 2vpi_A GMP synthase; guanine m 34.5 22 0.00075 33.5 3.0 39 24-62 17-55 (218)
337 2esr_A Methyltransferase; stru 34.3 1E+02 0.0034 26.7 7.2 67 31-100 54-123 (177)
338 1tqj_A Ribulose-phosphate 3-ep 34.2 48 0.0016 31.5 5.3 83 63-151 18-109 (230)
339 4fo4_A Inosine 5'-monophosphat 34.2 2.2E+02 0.0076 29.0 10.7 67 64-135 109-176 (366)
340 3hcw_A Maltose operon transcri 34.2 93 0.0032 29.4 7.5 64 44-116 31-100 (295)
341 3duw_A OMT, O-methyltransferas 34.1 2.6E+02 0.0088 25.0 12.4 81 31-115 83-167 (223)
342 1ypf_A GMP reductase; GUAC, pu 33.8 3.6E+02 0.012 26.7 14.4 97 32-135 121-238 (336)
343 3huu_A Transcription regulator 33.8 2.2E+02 0.0075 26.8 10.1 64 44-116 46-115 (305)
344 3l6u_A ABC-type sugar transpor 33.8 1E+02 0.0034 28.8 7.6 66 44-116 27-98 (293)
345 3tb6_A Arabinose metabolism tr 33.7 1.5E+02 0.0051 27.5 8.8 69 42-116 32-108 (298)
346 3sg0_A Extracellular ligand-bi 33.3 1.1E+02 0.0038 29.6 8.1 87 32-124 160-257 (386)
347 2f6u_A GGGPS, (S)-3-O-geranylg 33.3 86 0.0029 30.2 7.0 58 65-136 23-84 (234)
348 3iwt_A 178AA long hypothetical 33.3 80 0.0027 28.4 6.5 47 41-87 39-91 (178)
349 3tr6_A O-methyltransferase; ce 33.2 1.6E+02 0.0056 26.4 8.8 68 31-100 89-161 (225)
350 1wl8_A GMP synthase [glutamine 33.2 36 0.0012 30.7 4.2 76 34-114 3-79 (189)
351 1fy2_A Aspartyl dipeptidase; s 32.9 1E+02 0.0036 29.0 7.5 71 23-102 24-100 (229)
352 2gek_A Phosphatidylinositol ma 32.9 85 0.0029 30.6 7.2 31 31-61 20-58 (406)
353 3uuw_A Putative oxidoreductase 32.8 1.2E+02 0.004 29.3 8.1 105 31-152 6-115 (308)
354 3hut_A Putative branched-chain 32.7 2.2E+02 0.0075 27.3 10.1 86 32-123 140-236 (358)
355 3o9z_A Lipopolysaccaride biosy 32.5 79 0.0027 31.1 6.8 111 31-153 3-122 (312)
356 3h2s_A Putative NADH-flavin re 32.5 65 0.0022 28.9 5.8 57 32-90 1-57 (224)
357 1kjq_A GART 2, phosphoribosylg 32.4 85 0.0029 31.3 7.2 32 30-62 10-41 (391)
358 2cvh_A DNA repair and recombin 32.4 68 0.0023 28.7 5.9 85 31-115 45-154 (220)
359 3axs_A Probable N(2),N(2)-dime 32.4 2.5E+02 0.0086 28.8 10.9 78 32-117 78-160 (392)
360 2nzl_A Hydroxyacid oxidase 1; 32.3 1.5E+02 0.0051 30.5 9.1 73 60-136 259-336 (392)
361 3e82_A Putative oxidoreductase 32.3 1.6E+02 0.0055 29.3 9.3 103 31-152 7-116 (364)
362 3lop_A Substrate binding perip 32.2 86 0.003 30.4 7.1 81 32-118 142-233 (364)
363 3gdo_A Uncharacterized oxidore 32.1 1.6E+02 0.0054 29.3 9.1 105 31-152 5-114 (358)
364 1vlj_A NADH-dependent butanol 31.9 1.9E+02 0.0065 29.6 9.9 86 24-114 35-150 (407)
365 2rgy_A Transcriptional regulat 31.8 1.9E+02 0.0065 27.0 9.3 65 43-116 26-99 (290)
366 3kts_A Glycerol uptake operon 31.7 59 0.002 30.5 5.4 77 50-135 96-178 (192)
367 3dm5_A SRP54, signal recogniti 31.5 1.8E+02 0.0063 30.5 9.7 58 27-86 124-191 (443)
368 3fwz_A Inner membrane protein 31.4 1.4E+02 0.0046 25.3 7.4 55 30-87 6-60 (140)
369 3e8x_A Putative NAD-dependent 31.4 50 0.0017 30.3 4.9 59 26-86 16-75 (236)
370 3oa2_A WBPB; oxidoreductase, s 31.4 76 0.0026 31.3 6.5 113 31-153 3-123 (318)
371 3e3m_A Transcriptional regulat 31.3 1.1E+02 0.0036 30.0 7.6 63 43-114 88-156 (355)
372 3abi_A Putative uncharacterize 31.3 1.3E+02 0.0044 30.1 8.3 98 24-135 9-106 (365)
373 2xw6_A MGS, methylglyoxal synt 31.3 80 0.0027 27.9 5.9 52 67-126 66-122 (134)
374 3c3y_A Pfomt, O-methyltransfer 31.2 1.6E+02 0.0053 27.4 8.4 69 31-101 95-169 (237)
375 2d59_A Hypothetical protein PH 31.2 68 0.0023 28.0 5.5 101 23-130 15-125 (144)
376 4ew6_A D-galactose-1-dehydroge 30.9 91 0.0031 30.9 7.0 102 31-153 25-131 (330)
377 2gl5_A Putative dehydratase pr 30.7 1.7E+02 0.0059 29.7 9.3 98 44-146 205-309 (410)
378 3fhl_A Putative oxidoreductase 30.6 69 0.0023 32.0 6.1 106 30-153 4-115 (362)
379 1kbi_A Cytochrome B2, L-LCR; f 30.5 1.6E+02 0.0054 31.5 9.2 89 44-136 332-432 (511)
380 2dul_A N(2),N(2)-dimethylguano 30.5 1.6E+02 0.0055 30.0 9.0 78 31-116 71-165 (378)
381 1mjf_A Spermidine synthase; sp 30.4 1.8E+02 0.0061 28.0 8.9 66 31-101 98-181 (281)
382 2i7c_A Spermidine synthase; tr 30.4 1.2E+02 0.0042 29.2 7.7 69 31-102 102-181 (283)
383 4fb5_A Probable oxidoreductase 30.2 92 0.0031 30.7 7.0 113 24-152 17-143 (393)
384 3lp8_A Phosphoribosylamine-gly 30.0 1.2E+02 0.004 31.4 8.0 55 28-84 18-90 (442)
385 4h08_A Putative hydrolase; GDS 29.9 2.2E+02 0.0076 24.9 8.9 80 32-116 21-120 (200)
386 1uir_A Polyamine aminopropyltr 29.8 1.3E+02 0.0046 29.4 8.0 69 31-102 101-184 (314)
387 3cea_A MYO-inositol 2-dehydrog 29.8 2.4E+02 0.0082 27.4 9.9 105 31-150 8-118 (346)
388 2fep_A Catabolite control prot 29.7 1.7E+02 0.0058 27.4 8.5 65 43-116 34-104 (289)
389 2hnk_A SAM-dependent O-methylt 29.6 1.3E+02 0.0046 27.6 7.6 69 31-101 85-169 (239)
390 3kjx_A Transcriptional regulat 29.5 1.4E+02 0.0049 28.8 8.2 64 42-114 85-154 (344)
391 3o74_A Fructose transport syst 29.5 1.1E+02 0.0038 28.0 7.0 65 44-116 21-91 (272)
392 1ls1_A Signal recognition part 29.4 4E+02 0.014 25.8 11.5 63 28-92 123-196 (295)
393 1xea_A Oxidoreductase, GFO/IDH 29.4 1.6E+02 0.0054 28.7 8.5 104 30-150 1-110 (323)
394 3ot5_A UDP-N-acetylglucosamine 29.4 3E+02 0.01 27.7 10.9 101 31-152 257-360 (403)
395 2d00_A V-type ATP synthase sub 29.3 2E+02 0.007 24.1 8.0 74 31-114 3-79 (109)
396 2iuy_A Avigt4, glycosyltransfe 29.0 90 0.0031 29.9 6.5 106 31-151 188-306 (342)
397 4e38_A Keto-hydroxyglutarate-a 29.0 1.6E+02 0.0054 28.3 8.1 75 51-134 123-200 (232)
398 3ctl_A D-allulose-6-phosphate 28.9 90 0.0031 29.8 6.3 88 45-136 96-195 (231)
399 3tqv_A Nicotinate-nucleotide p 28.9 1.1E+02 0.0038 30.4 7.2 69 78-150 169-239 (287)
400 3b0p_A TRNA-dihydrouridine syn 28.9 2.1E+02 0.007 28.8 9.3 40 93-135 185-224 (350)
401 2i2c_A Probable inorganic poly 28.9 1E+02 0.0035 29.8 6.8 87 33-153 2-93 (272)
402 2x6q_A Trehalose-synthase TRET 28.8 4.2E+02 0.014 25.9 12.5 107 31-153 262-379 (416)
403 1viz_A PCRB protein homolog; s 28.8 92 0.0031 30.1 6.4 58 66-136 24-84 (240)
404 2an1_A Putative kinase; struct 28.7 82 0.0028 30.5 6.2 97 32-153 6-119 (292)
405 3gnn_A Nicotinate-nucleotide p 28.6 3E+02 0.01 27.5 10.2 66 58-133 213-278 (298)
406 3ajx_A 3-hexulose-6-phosphate 28.6 1.6E+02 0.0054 26.6 7.8 98 31-135 77-185 (207)
407 2dri_A D-ribose-binding protei 28.6 1.8E+02 0.0063 26.8 8.4 64 44-115 20-90 (271)
408 4f3h_A Fimxeal, putative uncha 28.5 2.2E+02 0.0074 26.5 9.0 86 45-133 146-238 (250)
409 3c24_A Putative oxidoreductase 28.5 1.3E+02 0.0044 28.7 7.5 74 26-101 6-89 (286)
410 3v5n_A Oxidoreductase; structu 28.4 1.9E+02 0.0066 29.4 9.2 113 31-152 37-159 (417)
411 1ujp_A Tryptophan synthase alp 28.4 1.2E+02 0.0041 29.6 7.3 95 34-136 123-229 (271)
412 3dty_A Oxidoreductase, GFO/IDH 28.4 2E+02 0.007 28.9 9.3 113 31-152 12-134 (398)
413 3f4w_A Putative hexulose 6 pho 28.3 57 0.002 29.8 4.7 84 63-150 11-99 (211)
414 1t0b_A THUA-like protein; treh 28.3 1.6E+02 0.0054 28.4 8.0 77 31-113 7-103 (252)
415 3ggo_A Prephenate dehydrogenas 28.3 4.1E+02 0.014 25.9 11.4 89 23-115 25-129 (314)
416 2h6r_A Triosephosphate isomera 28.2 2.9E+02 0.01 25.7 9.8 100 31-136 82-199 (219)
417 3orh_A Guanidinoacetate N-meth 28.1 1.1E+02 0.0039 28.3 6.9 56 30-87 82-138 (236)
418 3hm2_A Precorrin-6Y C5,15-meth 28.0 1.8E+02 0.0061 24.8 7.7 65 31-101 49-115 (178)
419 4htf_A S-adenosylmethionine-de 28.0 1E+02 0.0035 29.1 6.6 78 22-102 81-162 (285)
420 2px2_A Genome polyprotein [con 27.8 71 0.0024 31.6 5.3 58 77-150 139-198 (269)
421 2ffh_A Protein (FFH); SRP54, s 27.7 5.3E+02 0.018 26.7 13.2 58 26-85 121-188 (425)
422 3dqp_A Oxidoreductase YLBE; al 27.7 3E+02 0.01 24.5 9.5 30 32-61 1-30 (219)
423 1me8_A Inosine-5'-monophosphat 27.6 1.1E+02 0.0038 32.4 7.4 69 62-135 241-311 (503)
424 2ioy_A Periplasmic sugar-bindi 27.5 1.9E+02 0.0064 26.9 8.4 65 43-115 19-90 (283)
425 2ixa_A Alpha-N-acetylgalactosa 27.3 3.1E+02 0.011 28.1 10.6 113 30-152 19-140 (444)
426 1jcn_A Inosine monophosphate d 27.3 1.9E+02 0.0064 30.6 9.1 67 64-135 256-323 (514)
427 3kwp_A Predicted methyltransfe 27.3 3.5E+02 0.012 26.6 10.5 95 32-135 42-145 (296)
428 3btv_A Galactose/lactose metab 27.3 87 0.003 32.4 6.3 106 31-151 20-143 (438)
429 1vmd_A MGS, methylglyoxal synt 27.2 1.2E+02 0.0042 28.1 6.6 67 67-142 90-161 (178)
430 3cbg_A O-methyltransferase; cy 27.1 1.8E+02 0.0063 26.7 8.1 80 31-114 97-181 (232)
431 3egc_A Putative ribose operon 27.0 99 0.0034 28.9 6.3 66 43-117 26-97 (291)
432 3sho_A Transcriptional regulat 27.0 3E+02 0.01 24.1 9.2 96 32-138 40-140 (187)
433 1me8_A Inosine-5'-monophosphat 26.9 4E+02 0.014 28.1 11.6 101 31-136 254-381 (503)
434 2vpt_A Lipolytic enzyme; ester 26.8 76 0.0026 28.6 5.2 85 30-116 4-129 (215)
435 2dwc_A PH0318, 433AA long hypo 26.8 1.2E+02 0.0041 30.8 7.3 32 30-62 18-49 (433)
436 3m9w_A D-xylose-binding peripl 26.8 2.3E+02 0.0078 26.7 8.9 68 42-116 19-92 (313)
437 2xj4_A MIPZ; replication, cell 26.7 66 0.0022 30.9 5.0 16 26-41 28-43 (286)
438 3brq_A HTH-type transcriptiona 26.7 2.4E+02 0.0081 26.0 8.9 67 42-116 38-110 (296)
439 2al1_A Enolase 1, 2-phospho-D- 26.7 68 0.0023 33.7 5.4 100 38-143 219-352 (436)
440 1p4c_A L(+)-mandelate dehydrog 26.5 1.9E+02 0.0064 29.5 8.6 88 43-136 213-307 (380)
441 1zco_A 2-dehydro-3-deoxyphosph 26.5 3.6E+02 0.012 26.0 10.3 78 66-150 148-255 (262)
442 3gv0_A Transcriptional regulat 26.5 2.2E+02 0.0074 26.6 8.6 64 44-116 29-98 (288)
443 1vma_A Cell division protein F 26.5 4E+02 0.014 26.1 10.9 55 29-85 130-194 (306)
444 1ujp_A Tryptophan synthase alp 26.4 57 0.002 32.0 4.5 55 93-150 80-140 (271)
445 1usg_A Leucine-specific bindin 26.4 1.8E+02 0.0063 27.5 8.2 81 32-118 139-230 (346)
446 3ffs_A Inosine-5-monophosphate 26.4 1.3E+02 0.0044 31.3 7.4 65 65-135 146-211 (400)
447 3llv_A Exopolyphosphatase-rela 26.4 87 0.003 26.3 5.2 16 30-45 28-43 (141)
448 3sy8_A ROCR; TIM barrel phosph 26.3 70 0.0024 32.4 5.4 98 49-149 283-391 (400)
449 3njr_A Precorrin-6Y methylase; 26.3 1.8E+02 0.0061 26.3 7.7 68 26-101 72-142 (204)
450 3vk5_A MOEO5; TIM barrel, tran 26.1 1.4E+02 0.0049 29.7 7.3 57 78-136 200-256 (286)
451 3ipc_A ABC transporter, substr 26.1 1.5E+02 0.0051 28.5 7.5 85 32-122 139-234 (356)
452 3ou2_A SAM-dependent methyltra 26.0 1.4E+02 0.0047 26.4 6.8 83 23-114 60-146 (218)
453 3llv_A Exopolyphosphatase-rela 26.0 2.8E+02 0.0096 22.9 10.7 51 31-84 6-56 (141)
454 1ydw_A AX110P-like protein; st 26.0 2.5E+02 0.0085 27.7 9.3 107 31-150 6-118 (362)
455 3kl4_A SRP54, signal recogniti 25.8 1.9E+02 0.0065 30.3 8.6 57 27-85 121-187 (433)
456 2yvq_A Carbamoyl-phosphate syn 25.8 59 0.002 28.6 4.1 29 34-62 27-57 (143)
457 2khz_A C-MYC-responsive protei 25.8 71 0.0024 28.7 4.7 111 31-154 11-152 (165)
458 3tj4_A Mandelate racemase; eno 25.8 2.8E+02 0.0097 27.9 9.8 99 43-146 183-288 (372)
459 4ef8_A Dihydroorotate dehydrog 25.7 1.3E+02 0.0045 30.6 7.2 60 93-154 265-331 (354)
460 1l3i_A Precorrin-6Y methyltran 25.7 2.2E+02 0.0076 24.2 7.9 69 27-101 51-122 (192)
461 3inp_A D-ribulose-phosphate 3- 25.6 1.2E+02 0.004 29.4 6.5 84 63-150 41-130 (246)
462 1req_B Methylmalonyl-COA mutas 25.4 82 0.0028 34.9 5.9 97 44-148 527-630 (637)
463 3st7_A Capsular polysaccharide 25.3 2.9E+02 0.0099 27.0 9.6 79 32-116 1-95 (369)
464 3fro_A GLGA glycogen synthase; 25.3 1.3E+02 0.0046 29.4 7.1 32 31-62 2-42 (439)
465 3r75_A Anthranilate/para-amino 25.2 84 0.0029 34.7 6.0 75 30-114 445-528 (645)
466 3d8u_A PURR transcriptional re 24.8 3.3E+02 0.011 24.8 9.4 64 43-115 21-90 (275)
467 4egb_A DTDP-glucose 4,6-dehydr 24.8 2.3E+02 0.0078 27.2 8.6 32 29-60 22-55 (346)
468 2a1i_A DNA excision repair pro 24.7 1.6E+02 0.0055 26.5 6.6 51 22-72 75-129 (146)
469 3slg_A PBGP3 protein; structur 24.6 2.3E+02 0.0079 27.5 8.7 32 30-61 23-55 (372)
470 2f62_A Nucleoside 2-deoxyribos 24.6 3.1E+02 0.011 24.6 8.8 73 38-116 22-107 (161)
471 2qr6_A IMP dehydrogenase/GMP r 24.4 3.4E+02 0.012 27.4 10.2 87 41-135 142-238 (393)
472 3dzc_A UDP-N-acetylglucosamine 24.4 2.1E+02 0.0073 28.7 8.6 101 31-152 263-366 (396)
473 3k9c_A Transcriptional regulat 24.3 1.7E+02 0.0057 27.4 7.3 63 44-116 30-97 (289)
474 4fe7_A Xylose operon regulator 24.2 88 0.003 31.5 5.6 87 18-115 12-105 (412)
475 3dbi_A Sugar-binding transcrip 24.2 4.7E+02 0.016 24.9 11.3 67 42-116 80-152 (338)
476 3khj_A Inosine-5-monophosphate 24.2 4.1E+02 0.014 26.9 10.6 65 65-135 107-172 (361)
477 1p9l_A Dihydrodipicolinate red 24.2 4.7E+02 0.016 24.9 11.9 74 32-114 1-76 (245)
478 3ajd_A Putative methyltransfer 24.1 2.1E+02 0.007 27.2 8.0 54 32-85 109-164 (274)
479 1oj7_A Hypothetical oxidoreduc 24.1 2.2E+02 0.0075 29.1 8.7 66 31-101 50-127 (408)
480 1vcf_A Isopentenyl-diphosphate 24.0 3.3E+02 0.011 26.9 9.8 48 90-139 241-289 (332)
481 3nkl_A UDP-D-quinovosamine 4-d 24.0 3.1E+02 0.011 22.7 8.4 31 31-61 4-34 (141)
482 2rdx_A Mandelate racemase/muco 23.9 2.9E+02 0.01 27.7 9.5 95 41-143 173-274 (379)
483 3uhj_A Probable glycerol dehyd 23.8 82 0.0028 32.4 5.3 84 21-113 42-136 (387)
484 2akz_A Gamma enolase, neural; 23.8 85 0.0029 33.0 5.5 101 38-144 217-350 (439)
485 2b2c_A Spermidine synthase; be 23.7 1.4E+02 0.0047 29.6 6.8 68 31-101 132-210 (314)
486 8abp_A L-arabinose-binding pro 23.7 2.1E+02 0.0071 26.7 7.9 66 43-115 20-90 (306)
487 3mti_A RRNA methylase; SAM-dep 23.6 87 0.003 27.3 4.8 61 23-85 36-97 (185)
488 1y81_A Conserved hypothetical 23.6 91 0.0031 27.1 4.8 95 31-130 14-117 (138)
489 1zfj_A Inosine monophosphate d 23.6 3.5E+02 0.012 28.1 10.3 108 23-135 176-301 (491)
490 3ntv_A MW1564 protein; rossman 23.5 1.7E+02 0.0059 26.8 7.1 67 30-101 94-164 (232)
491 2glx_A 1,5-anhydro-D-fructose 23.4 2.8E+02 0.0097 26.7 9.0 44 108-151 63-110 (332)
492 1u0t_A Inorganic polyphosphate 23.4 1.3E+02 0.0044 29.6 6.5 100 32-153 5-131 (307)
493 1tlt_A Putative oxidoreductase 23.4 1.4E+02 0.0047 29.0 6.7 101 31-150 5-112 (319)
494 2qv7_A Diacylglycerol kinase D 23.4 2E+02 0.0068 28.4 7.9 80 30-115 23-114 (337)
495 1qap_A Quinolinic acid phospho 23.4 5.4E+02 0.019 25.3 11.3 91 34-134 182-278 (296)
496 3oy2_A Glycosyltransferase B73 23.3 2E+02 0.007 28.1 8.1 107 31-152 215-354 (413)
497 3c0k_A UPF0064 protein YCCW; P 23.3 1.8E+02 0.0063 29.3 7.8 55 31-85 243-301 (396)
498 3g1w_A Sugar ABC transporter; 23.3 1.4E+02 0.0049 27.9 6.7 66 44-116 23-95 (305)
499 4evq_A Putative ABC transporte 23.2 3.1E+02 0.01 26.3 9.2 77 32-114 152-239 (375)
500 3s2u_A UDP-N-acetylglucosamine 23.2 1.9E+02 0.0065 28.7 7.8 97 30-135 1-143 (365)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.95 E-value=5.5e-27 Score=212.42 Aligned_cols=127 Identities=27% Similarity=0.545 Sum_probs=114.4
Q ss_pred HHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 24 ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 24 e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
|.+|.+ .+|||||||++.+|..++.+|+..||+ |..+.+|.+|++.++... ||+||+|+.||+|||++++++||+.
T Consensus 6 e~~m~k-~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~ 82 (134)
T 3to5_A 6 EAILNK-NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRAD 82 (134)
T ss_dssp ---CCT-TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred HHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhC
Confidence 334433 479999999999999999999999996 667999999999998765 9999999999999999999999987
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
...+++|||++|++.+.+...+++++||+|||.|||+..+|..+|+++++|
T Consensus 83 ~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 83 EELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 777899999999999999999999999999999999999999999988754
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.90 E-value=6.3e-23 Score=177.80 Aligned_cols=121 Identities=29% Similarity=0.431 Sum_probs=112.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+.+||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|++++++|++....+.+|
T Consensus 1 m~~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~p 78 (122)
T 3gl9_A 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIP 78 (122)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCC
Confidence 4569999999999999999999999999999999999999998654 99999999999999999999999876567899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
||++|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 79 ii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 79 VIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.89 E-value=4e-22 Score=175.96 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=114.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999998755678999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.....+++..||++||.||++.++|..+|++++++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987654
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.88 E-value=6.6e-22 Score=170.56 Aligned_cols=119 Identities=30% Similarity=0.447 Sum_probs=111.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|++++++|++. ..+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~---~~~~ 75 (120)
T 3f6p_A 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKK---YDMP 75 (120)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTT---CCSC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhc---CCCC
Confidence 4579999999999999999999999999999999999999998755 9999999999999999999999864 3789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++|+..+.....+++..||++||.||++.++|..++++++++
T Consensus 76 ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 76 IIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988754
No 5
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.88 E-value=2e-24 Score=193.11 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=102.5
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
....+|||||||++.++..++.+|+..||+|+ .+.+|.+|++.++... ||+||+|+.||+|||++++++|++.
T Consensus 5 ~~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~~---- 78 (123)
T 2lpm_A 5 TERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAER---- 78 (123)
T ss_dssp CCCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHHT----
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHcC----
Confidence 34568999999999999999999999999986 6899999999998865 9999999999999999999999863
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
++|||++|++.+... +.++|+.+||.|||+.++|..+|+++.
T Consensus 79 ~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 79 NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 689999999987654 346799999999999999998887654
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.87 E-value=2.9e-21 Score=168.25 Aligned_cols=122 Identities=25% Similarity=0.540 Sum_probs=111.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+.... .||+||+|+.||+++|++++++|++....+.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 479999999999999999999999995 888999999999887542 499999999999999999999999865557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++|+..+.....++++.||++||.||++.++|..+|+.++.+
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988753
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.86 E-value=5.5e-21 Score=167.97 Aligned_cols=120 Identities=18% Similarity=0.453 Sum_probs=108.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHc-----CCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKG-----RPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~-----~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
.++||||||++..+..++.+|+..||. |..+.++.+|++.++. .. ||+||+|+.||+++|++++++|++..
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~- 78 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGEN--YNMIFMDVQMPKVDGLLSTKMIRRDL- 78 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCC--CSEEEECSCCSSSCHHHHHHHHHHHS-
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCC--CCEEEEeCCCCCCChHHHHHHHHhhc-
Confidence 468999999999999999999998985 7889999999999875 44 99999999999999999999998642
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.+.+|||++|++.+.....++++.||++||.||++.++|..+|++++..
T Consensus 79 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 79 GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999999999999999987643
No 8
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.86 E-value=1.1e-20 Score=170.00 Aligned_cols=125 Identities=23% Similarity=0.381 Sum_probs=116.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 4589999999999999999999999999999999999999998755 99999999999999999999999875557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|+..+.....+++..||++||.||++.++|..+|++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543
No 9
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.85 E-value=1.1e-20 Score=162.56 Aligned_cols=119 Identities=22% Similarity=0.441 Sum_probs=110.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (124)
T 1srr_A 2 MNEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVID--ENIR 77 (124)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHC--TTCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhC--CCCC
Confidence 4579999999999999999999999999999999999999998654 99999999999999999999998753 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
||++|+..+.....+++..|+++||.||++.++|..+++++++
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 78 VIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp EEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988754
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.85 E-value=1.5e-20 Score=167.50 Aligned_cols=122 Identities=19% Similarity=0.393 Sum_probs=107.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc--cCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE--ICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~--~~~~ 107 (527)
+.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+... ..+.
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~ 90 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMRY 90 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCCC
Confidence 4589999999999999999999999999999999999999998755 99999999999999999999998542 2356
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+|||++|+..+.+...+++..||++||.||++.++|..+|..+...
T Consensus 91 ~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 91 TPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887543
No 11
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.85 E-value=2.2e-20 Score=163.33 Aligned_cols=120 Identities=21% Similarity=0.319 Sum_probs=112.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLR--PGMKK 78 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHC--TTSEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhC--CCCcE
Confidence 479999999999999999999999999999999999999998755 99999999999999999999998754 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 79 IMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887654
No 12
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.85 E-value=3.3e-20 Score=160.29 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=111.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..++.+|+..||.|..+.++.++++.+.... ||+||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 78 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLK--INIPS 78 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 469999999999999999999999999999999999999988754 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 79 IVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887543
No 13
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.85 E-value=3.5e-20 Score=158.12 Aligned_cols=119 Identities=23% Similarity=0.396 Sum_probs=111.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+... +.+|||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~--~~~~ii 76 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSND--VSLPIL 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTT--CCSCEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcC--CCCCEE
Confidence 48999999999999999999999999999999999999998755 99999999999999999999998653 689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|+..+.....++++.|+++||.||++.++|..++++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 77 VLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887653
No 14
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.85 E-value=3.7e-21 Score=179.01 Aligned_cols=120 Identities=16% Similarity=0.283 Sum_probs=112.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 82 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQ--PDARI 82 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHC--TTCEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcC--CCCCE
Confidence 579999999999999999999999999999999999999998755 99999999999999999999998754 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|++.+.+...+++..||++||.||++.++|..+|+.++++.
T Consensus 83 i~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 83 LVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998776554
No 15
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.85 E-value=3.8e-20 Score=158.46 Aligned_cols=120 Identities=23% Similarity=0.410 Sum_probs=110.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..++.+|+..||.|..+.++.++++.+.... ||+||+|+.||+++|+++++.|++ .+.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~---~~~~~ 75 (122)
T 1zgz_A 1 MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRE---RSTVG 75 (122)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHT---TCCCE
T ss_pred CCcEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHh---cCCCC
Confidence 4579999999999999999999999999999999999999998755 999999999999999999999987 25799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 76 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 76 IILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887653
No 16
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.85 E-value=2e-20 Score=165.43 Aligned_cols=126 Identities=20% Similarity=0.343 Sum_probs=115.0
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.++++||||||++..+..++.+|+..||. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~ 80 (144)
T 3kht_A 3 LRSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQ 80 (144)
T ss_dssp --CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhccccc
Confidence 34689999999999999999999999987 888999999999998755 99999999999999999999999855567
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHhhcc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~-~~eeL~~~L~~v~rr~~~ 156 (527)
.+|||++|+..+.....+++..||++||.||+ +.++|..+|++++++...
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 81 HTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp TCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999 999999999999877643
No 17
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.85 E-value=1.8e-20 Score=159.94 Aligned_cols=118 Identities=23% Similarity=0.421 Sum_probs=108.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
|+++||||||++..+..++.+|+..||+ +..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~--~~~ 76 (120)
T 1tmy_A 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKID--PNA 76 (120)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHC--TTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhC--CCC
Confidence 4579999999999999999999999999 457999999999998755 99999999999999999999998764 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
|||++|+..+.....++++.|+++||.||++.++|..++++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 77 KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred eEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988763
No 18
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.85 E-value=4.3e-20 Score=165.00 Aligned_cols=127 Identities=24% Similarity=0.464 Sum_probs=113.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHc-------CCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKG-------RPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~-------~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
++++||||||++..+..++.+|+..|+ .|..+.++.+|++.++. ....|||||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 458999999999999999999999998 89999999999999961 123599999999999999999999999
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+....+.+|||++|+..+.....+++..|+++||.||++.++|..+|+++.+....
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFSV 138 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 86556789999999999999999999999999999999999999999998765543
No 19
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.85 E-value=7.8e-21 Score=167.22 Aligned_cols=125 Identities=21% Similarity=0.351 Sum_probs=114.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHc-CCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLP-SISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~-~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~ 106 (527)
++++||||||++..+..++.+|+. .||+|..+.++.+|++.+.. .. |||||+|+.|| +++|++++++|++....+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 357999999999999999999999 99999999999999999986 54 99999999999 999999999999854457
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
.+|||++|+..+.....+++..||++||.||++.++|..+|++++++...
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999877644
No 20
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.84 E-value=1.4e-20 Score=165.23 Aligned_cols=124 Identities=17% Similarity=0.321 Sum_probs=114.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+||
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~i 83 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAI 83 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 479999999999999999999999999999999999999998765 999999999999999999999998545578999
Q ss_pred EEEecCCCHHHHH-HHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 111 IMMSSQDSVSTVY-KCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 111 IilSa~~d~~~~~-~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
|++|+..+..... .++..|+++||.||++.++|..+|++++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 84 VVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 9999988777776 899999999999999999999999999987654
No 21
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.84 E-value=5.6e-20 Score=158.67 Aligned_cols=122 Identities=22% Similarity=0.480 Sum_probs=111.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ 81 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSALP 81 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTCC
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCc
Confidence 46899999999999999999999999 6888999999999997654 99999999999999999999999754456899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....++++.|+++||.||++.++|..+|++++++.
T Consensus 82 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 82 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887653
No 22
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.84 E-value=2e-20 Score=160.31 Aligned_cols=120 Identities=23% Similarity=0.406 Sum_probs=105.5
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 58999999999999999999999999999999999999998654 9999999999999999999999986545689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
++|+..+.....++++.|+++||.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888889999999999999999999999999988754
No 23
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.84 E-value=2.2e-20 Score=161.48 Aligned_cols=121 Identities=22% Similarity=0.456 Sum_probs=111.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ 83 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKKAA 83 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTTCE
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccCCC
Confidence 47999999999999999999999999 7888999999999998754 99999999999999999999998765457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
||++|+..+.....++++.|+++||.||++.++|..+|++++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 84 FIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988754
No 24
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=2.8e-20 Score=164.21 Aligned_cols=121 Identities=25% Similarity=0.419 Sum_probs=112.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|..+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 3 m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~--~~~~ 78 (137)
T 3cfy_A 3 LRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQND--IPTS 78 (137)
T ss_dssp CCCEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTT--CCCE
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcC--CCCC
Confidence 3458999999999999999999999999999999999999998755 99999999999999999999998753 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 79 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 79 VIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 25
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.84 E-value=6.7e-21 Score=163.96 Aligned_cols=123 Identities=28% Similarity=0.390 Sum_probs=112.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+|
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ 78 (127)
T 2jba_A 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIP 78 (127)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCC
Confidence 4579999999999999999999999999999999999999887644 99999999999999999999998765456899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....++++.|+++||.||++.++|..++++++++.
T Consensus 79 ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 79 VVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999988654
No 26
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.84 E-value=9.9e-20 Score=160.39 Aligned_cols=124 Identities=19% Similarity=0.390 Sum_probs=114.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+......||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~i 80 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKIT--PHMAV 80 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHC--TTCEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCCeE
Confidence 5799999999999999999999999999999999999999984223499999999999999999999998763 78999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
|++|+..+.....+++..||++||.||++.++|..+|++++++...
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 81 IILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999876643
No 27
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.84 E-value=1.3e-20 Score=162.70 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=109.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 469999999999999999999999999999999999999998765 999999999999999999999998754578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+... .+++..|+++||.||++.++|..++++.++..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999988877 88999999999999999999999999887554
No 28
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.84 E-value=1.7e-20 Score=164.83 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=113.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++..+..++.+|+..||+|..+.++.+|++.++... ||+||+|+.||+ ++|++++++|++.. +.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~--~~~ 81 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRG--FHL 81 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTT--CCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCC--CCC
Confidence 479999999999999999999999999999999999999987654 999999999999 99999999999864 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
|||++|+..+.....+++..||++||.||++.++|..+|++++.....
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999877643
No 29
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.84 E-value=4.1e-20 Score=182.76 Aligned_cols=128 Identities=24% Similarity=0.379 Sum_probs=116.5
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
....++||||||++..+..+...|+..||.|..+.++.+|++.++... .||+||+|+.||++||++++++|++......
T Consensus 121 ~~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~ 199 (259)
T 3luf_A 121 LNQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQ 199 (259)
T ss_dssp HHTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTT
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCC
Confidence 345689999999999999999999999999999999999999997642 3899999999999999999999998765567
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+|||++|+..+.....+++++||+|||.||++.++|..+|++++++...
T Consensus 200 ~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 200 LAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp SEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999999999999999999999999876543
No 30
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.84 E-value=7.3e-20 Score=163.97 Aligned_cols=121 Identities=23% Similarity=0.383 Sum_probs=113.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|++++++|++.. +.+||
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 89 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQY--PSTTR 89 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHC--TTSEE
T ss_pred CceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHC--CCCeE
Confidence 579999999999999999999999999999999999999998765 99999999999999999999998753 78999
Q ss_pred EEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~G-A~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.....+++..| |++||.||++.++|..+|++++++..
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99999999999999999999987653
No 31
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.84 E-value=3.9e-20 Score=161.34 Aligned_cols=122 Identities=25% Similarity=0.424 Sum_probs=112.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+.+||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 2 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ 77 (136)
T 1mvo_A 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQK--LMFP 77 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCC--CCCC
Confidence 5689999999999999999999999999999999999999998654 99999999999999999999998764 5789
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||++|+..+......+++.|+++||.||++.++|..+|++++++..
T Consensus 78 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 78 ILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999999888888899999999999999999999999999887643
No 32
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.84 E-value=4.1e-20 Score=160.54 Aligned_cols=123 Identities=24% Similarity=0.374 Sum_probs=108.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..++.+|+ .||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 35799999999999999999999 8999999999999999998765 99999999999999999999999875557899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|+..+... .+++..|+++||.||++.++|..+|++++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999988777 8999999999999999999999999999987644
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.84 E-value=9.1e-20 Score=162.91 Aligned_cols=124 Identities=23% Similarity=0.338 Sum_probs=111.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC-----CCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGR-----PRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~-----~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|++..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 46899999999999999999999887 788899999999999752 12499999999999999999999999864
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
..+.+|||++|+..+...+.++++.||++||.||++.++|..+|+++.+..
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999999999887654
No 34
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.84 E-value=7.5e-20 Score=155.50 Aligned_cols=117 Identities=26% Similarity=0.467 Sum_probs=109.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~---~~~~ii 76 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKT---SSVPIL 76 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHH---CCCCEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhC---CCCCEE
Confidence 58999999999999999999999999999999999999998654 9999999999999999999999863 578999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
++|+..+.....++++.|+++||.||++.++|..++++++++
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 77 MLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988754
No 35
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.84 E-value=4.4e-20 Score=160.09 Aligned_cols=121 Identities=24% Similarity=0.457 Sum_probs=105.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+.++||||||++..+..++.+|+..||.+..+.++.+|++.++... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRG--DQTP 81 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTT--CCCC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcC--CCCC
Confidence 4579999999999999999999999999999999999999997655 99999999999999999999998754 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~-~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....+++..|+++||.||+ +.++|..+|++++++.
T Consensus 82 ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 82 VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 99999999999999999999999999999 8999999999987654
No 36
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.84 E-value=1e-19 Score=158.88 Aligned_cols=124 Identities=21% Similarity=0.317 Sum_probs=112.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++.+||||||++..+..++.+|+..||+|..+.++.+|+..+.... .||+||+|+.||+++|+++++.|++.. .+.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~-~~~~~ 83 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASE-RAALS 83 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTST-TTTCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcC-CCCCC
Confidence 3589999999999999999999999999999999999999987642 499999999999999999999998763 47899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||++|+..+.....+++..|+++||.||++.++|..+|+++.....
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 9999999999999999999999999999999999999999876543
No 37
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.84 E-value=4.1e-20 Score=161.70 Aligned_cols=123 Identities=20% Similarity=0.340 Sum_probs=114.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..++.+|+..||.|..+.++.+|++.++... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~ 81 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGG--AKPY 81 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTT--CCCE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 4589999999999999999999999999999999999999998765 99999999999999999999998764 7899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|+..+.....+++..||++||.||++.++|..+|++++++...
T Consensus 82 ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 82 VIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp EEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999876543
No 38
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.83 E-value=8.4e-20 Score=163.03 Aligned_cols=129 Identities=16% Similarity=0.290 Sum_probs=113.0
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
|..-....+++||||||++..+..++.+|+..| +.|..+.++.+|++.+.... |||||+|+.||+++|+++++.|+
T Consensus 12 ~~~~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~ 89 (150)
T 4e7p_A 12 SGLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIR 89 (150)
T ss_dssp --------CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHH
Confidence 333344456899999999999999999999887 78889999999999998755 99999999999999999999998
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+.. +.+|||++|+..+.....++++.||++||.||++.++|..+|++++++..
T Consensus 90 ~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 90 SEK--LETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp HTT--CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred HhC--CCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 763 78999999999999999999999999999999999999999999987653
No 39
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.83 E-value=1.4e-19 Score=155.08 Aligned_cols=119 Identities=24% Similarity=0.435 Sum_probs=110.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~---~~~~i 77 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQ---ANVAL 77 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHH---CCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhC---CCCcE
Confidence 358999999999999999999999999999999999999998755 9999999999999999999999875 47899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....++++.|+++||.||++.++|..++++++++.
T Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 78 MFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887653
No 40
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.83 E-value=1.5e-19 Score=158.32 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=114.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++++||||||++..+..++.+|+. .||+ |..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 458999999999999999999999 9999 889999999999998765 999999999999999999999998544578
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999876543
No 41
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.83 E-value=4.4e-20 Score=160.40 Aligned_cols=122 Identities=17% Similarity=0.361 Sum_probs=110.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|.++||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.... ||+||+|+.||+++|++++++|++. ..+.
T Consensus 1 m~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ 77 (130)
T 1dz3_A 1 MSIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAG-FEHQ 77 (130)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHH-CSSC
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhc-CCCC
Confidence 4579999999999999999999987 88876 6899999999998655 9999999999999999999999874 2357
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|||++|+..+.....+++..||++||.||++.++|..+|++++++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 78 PNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999987654
No 42
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.83 E-value=1.1e-19 Score=159.70 Aligned_cols=123 Identities=25% Similarity=0.368 Sum_probs=112.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHc-----CCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKG-----RPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~-----~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
.+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.|++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~ 85 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQH 85 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 357999999999999999999999999 88999999999999986 54 9999999999999999999999984
Q ss_pred c--cCCCCeEEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 103 E--ICKNIPVIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 103 ~--~~~~iPVIilSa~~d~~~~~~al~~G-A~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
. ..+.+|||++|+..+.....+++..| +++||.||++.++|..+|++++...
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 86 FQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp CGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 3 45789999999999999999999999 9999999999999999999987654
No 43
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.83 E-value=7.1e-20 Score=161.29 Aligned_cols=122 Identities=21% Similarity=0.406 Sum_probs=109.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 369999999999999999999999999999999999999998755 999999999999999999999998654568999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+.........++..|+++||.||++.++|..+|+.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 99999877666666777788999999999999999999987654
No 44
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.83 E-value=1e-19 Score=160.05 Aligned_cols=128 Identities=22% Similarity=0.345 Sum_probs=115.2
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCC--------CCceEEEEeCCCCCCCHHHHHH
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRP--------RNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~--------~~pDLVLlDl~MP~mDGlelL~ 97 (527)
..++++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++
T Consensus 3 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~ 82 (149)
T 1k66_A 3 GNATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQ 82 (149)
T ss_dssp SCTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CCCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHH
Confidence 34568999999999999999999999998 8999999999999998610 2499999999999999999999
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+|++....+.+|||++|+..+.....++++.|+++||.||++.++|..+|++++++..
T Consensus 83 ~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 83 EIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp HHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 9987643468999999999999999999999999999999999999999999987653
No 45
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.83 E-value=7.7e-20 Score=160.06 Aligned_cols=121 Identities=17% Similarity=0.322 Sum_probs=108.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++..+..++.+|+..| +.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++. .+.+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~--~~~~ 78 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKK--HLNI 78 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHT--TCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHH--CCCC
Confidence 3689999999999999999999876 45677999999999998755 9999999999999999999999874 3689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|||++|+..+.....+++..||++||.||++.++|..+|++++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999876543
No 46
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.83 E-value=8.2e-20 Score=177.91 Aligned_cols=122 Identities=20% Similarity=0.420 Sum_probs=114.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 97 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMPGMDGFGVLRRLRADG--IDAP 97 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 3589999999999999999999999999999999999999998755 99999999999999999999998764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||++|+..+.....+++++||++||.||++.++|..+|+.++++..
T Consensus 98 ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 98 ALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999987653
No 47
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.83 E-value=5.6e-20 Score=165.97 Aligned_cols=121 Identities=26% Similarity=0.475 Sum_probs=111.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
++++||||||++..+..|+.+|+..||+++ .+.++.+|++.+......|||||+|+.||+++|++++++|++.. +.+
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~--~~~ 112 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFD--KNA 112 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHC--TTC
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhC--CCC
Confidence 458999999999999999999999999998 89999999999987511389999999999999999999998764 789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|||++|+..+.....+++.+|+++||.||++.++|..+|+++++
T Consensus 113 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 113 RVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred cEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988753
No 48
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.83 E-value=2.2e-19 Score=156.02 Aligned_cols=125 Identities=22% Similarity=0.331 Sum_probs=113.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCC-----CCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRP-----RNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~-----~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 46999999999999999999999998 8999999999999998610 2499999999999999999999999864
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
..+.+|||++|+..+.....+++..|+++||.||++.++|..+|++++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 4467999999999999999999999999999999999999999999987653
No 49
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.83 E-value=1e-20 Score=190.80 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=109.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~ 107 (527)
...+||||||++.++..++.+|+..||.|. .+.+|.+|++.+.... |||||+|+.|| +|||+++++.||+.. +
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~---~ 233 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRM---D 233 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHT---T
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcC---C
Confidence 457999999999999999999999999999 8999999999998765 99999999999 899999999999875 8
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+|||++|++.+ ...+++.+||++||.|||+.++|..+|+.++.+..
T Consensus 234 ~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 234 VPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp CCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 99999999853 46779999999999999999999999999987754
No 50
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.83 E-value=1.2e-19 Score=160.06 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=111.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. .+||
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~---~~~i 78 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVT---TCPI 78 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTC---CCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCC---CCCE
Confidence 479999999999999999999999999999999999999998755 99999999999999999999998753 7899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 79 VYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987664
No 51
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.83 E-value=3.6e-20 Score=161.11 Aligned_cols=123 Identities=15% Similarity=0.267 Sum_probs=111.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+++||||||++..+..++.+|+..||.+. .+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~--~~~~ 76 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQ--YSGI 76 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTT--CCSE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcC--CCCe
Confidence 36999999999999999999999999988 7999999999998765 99999999999999999999998764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhccc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSM 157 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~ 157 (527)
||++|+..+.....++++.|+++||.||++.++|..+|++++++....
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 999999999889999999999999999999999999999998776544
No 52
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.82 E-value=4e-20 Score=163.25 Aligned_cols=122 Identities=21% Similarity=0.313 Sum_probs=110.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~i 108 (527)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+... ..|||||+|+.||+ ++|+++++.|++. +.+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~ 79 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQI---SEL 79 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHH---CCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhC---CCC
Confidence 357999999999999999999999999999999999999999762 24999999999995 9999999999875 589
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|||++|+..+.....+++..||++||.||++.++|..+|++++++.+
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp CEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999987654
No 53
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.82 E-value=8.6e-20 Score=161.52 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=114.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 4689999999999999999999999999999999999999998755 99999999999999999999999854457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543
No 54
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.82 E-value=1.4e-19 Score=154.02 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=109.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..++.+|+..||.+..+.++.+++..+.... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~---~~~~~ii 76 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQ---WSAVPVI 76 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHT---TCCCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHh---CCCCcEE
Confidence 68999999999999999999999999999999999999887654 999999999999999999999984 2579999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|+..+.....++++.|+++||.||++.++|..++++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 77 VLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp EEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999887654
No 55
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.82 E-value=9.5e-21 Score=165.97 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=110.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~G-y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
.+++||||||++..+..++.+|+..| |+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~ 88 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALW--ATV 88 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGG--TTC
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhC--CCC
Confidence 35799999999999999999999999 99999999999999887654 99999999999999999999998865 589
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||++|+..+.....+++..||++||.||++.++|..+|++++++
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999887543
No 56
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.82 E-value=2.4e-19 Score=155.52 Aligned_cols=122 Identities=17% Similarity=0.379 Sum_probs=107.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++....+.++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 3579999999999999999999999999999999999999998765 99999999999999999999999765434567
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||+++..... ...++++.|+++||.||++.++|..+|+++....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 7777776665 7889999999999999999999999999887554
No 57
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.82 E-value=8.9e-20 Score=173.60 Aligned_cols=123 Identities=20% Similarity=0.349 Sum_probs=108.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcC-----------CCCceEEEEeCCCCCCCHHHHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGR-----------PRNIDLILTEVDLPSISGFALLT 97 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~-----------~~~pDLVLlDl~MP~mDGlelL~ 97 (527)
..++||||||++.++..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 357999999999999999999999999 899999999999999763 12499999999999999999999
Q ss_pred HHHhccc--CCCCeEEEEecCC-CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 98 LVMEHEI--CKNIPVIMMSSQD-SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 98 ~Lr~~~~--~~~iPVIilSa~~-d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|++... .+.+|||++|++. +.+...+++..|+++||.||++ +|..+|++++++.
T Consensus 140 ~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp HHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC---
T ss_pred HHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhh
Confidence 9997532 2689999999998 8889999999999999999999 9999999887654
No 58
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=5.4e-20 Score=161.54 Aligned_cols=126 Identities=15% Similarity=0.337 Sum_probs=114.9
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
.++++||||||++..+..+..+|+..||+|..+.++.+|++.++... ||+||+|+.||+++|++++++|++....+.+
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 82 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGI 82 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 35689999999999999999999999999999999999999998765 9999999999999999999999985445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
|||++|+..+.....+++..|+++||.||++.++|..+|++++++.+.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 999999998888888999999999999999999999999999876543
No 59
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.82 E-value=2e-19 Score=158.20 Aligned_cols=121 Identities=21% Similarity=0.321 Sum_probs=111.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+ ||+++|+++++.|++.. +.+|
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~--~~~p 77 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEF--PDTK 77 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHC--TTCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHC--CCCC
Confidence 4579999999999999999999999999999999999999998754 99999999 99999999999998753 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||++|+..+.....+++..|+++||.||++.++|..+|++++++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999987653
No 60
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.82 E-value=1.6e-19 Score=171.40 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=114.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+++||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 1 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~--~~~~ 76 (225)
T 1kgs_A 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESG--VNTP 76 (225)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTT--CCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCC
Confidence 4689999999999999999999999999999999999999998755 99999999999999999999998764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
||++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 77 ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~ 123 (225)
T 1kgs_A 77 VLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123 (225)
T ss_dssp EEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999877643
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.82 E-value=9.4e-20 Score=161.40 Aligned_cols=121 Identities=15% Similarity=0.216 Sum_probs=111.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHc--CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKG--RPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~G-y~V~~a~dg~eALe~L~~--~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
...+||||||++..+..++.+|+..| |+|..+.++.+++..+.. .. |||||+|+.||+++|++++++|+... +
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~--~ 94 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLH--P 94 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHC--T
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhC--C
Confidence 35899999999999999999999998 999999999988877654 44 99999999999999999999998764 7
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+|||++|+..+.+...+++..||++||.||++.++|..+|++++++.
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999998765
No 62
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.82 E-value=8.8e-20 Score=161.83 Aligned_cols=121 Identities=23% Similarity=0.396 Sum_probs=103.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHH--hCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLR--KSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~--~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
|+++||||||++..+..+..+|. ..||.++ .+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +
T Consensus 1 m~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~--~ 76 (141)
T 3cu5_A 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLY--P 76 (141)
T ss_dssp -CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHC--T
T ss_pred CcceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--C
Confidence 45799999999999999999997 3688877 7999999999997654 99999999999999999999998753 6
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+|||++|+..+.....+++..|+++||.||++.++|..+|++++++.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 77 DCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp TCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 899999999988888889999999999999999999999999887654
No 63
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.81 E-value=4.8e-19 Score=158.29 Aligned_cols=122 Identities=18% Similarity=0.320 Sum_probs=111.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++++||||||++..+..+..+|+. ||+|..+.++.+|++.+.... .||+||+|+.||+++|+++++.|+... +.+|
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~ 78 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLIS--PNSV 78 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHC--SSCE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcC--CCcE
Confidence 457999999999999999999986 899999999999999998653 269999999999999999999998754 7899
Q ss_pred EEEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 110 VIMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~G-A~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
||++|+..+.....+++..| +++||.||++.++|..+|+.++++..
T Consensus 79 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 79 YLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999999999999987653
No 64
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.81 E-value=5.2e-19 Score=154.59 Aligned_cols=122 Identities=16% Similarity=0.326 Sum_probs=111.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~ 105 (527)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.|+.. .
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--~ 78 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--Y 78 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHH--C
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhh--C
Confidence 479999999999999999999999999999999999999998765 99999999999 99999999999875 3
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+.+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 79 ~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 79 RDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp TTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred cCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999999999999876543
No 65
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.81 E-value=8.9e-20 Score=160.43 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=104.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+.. |.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|+.....+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999988 99999999999999998765 999999999999999999999998754578999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
|++|+..+.+...+++..||++||.||++.++|..+|++++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999888889999999999999999999999999999877644
No 66
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.81 E-value=2.2e-19 Score=153.45 Aligned_cols=121 Identities=21% Similarity=0.346 Sum_probs=110.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~i 108 (527)
|.++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|++++++|++....+.+
T Consensus 4 m~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~ 81 (127)
T 2gkg_A 4 MSKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNV 81 (127)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCC
Confidence 4469999999999999999999999999999999999999998755 99999999999 99999999999987445789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||++ +..+.....+++..|+++||.||++..+|..+|+++++.
T Consensus 82 ~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 82 PIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp CEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 99999 888888899999999999999999999999999988653
No 67
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.81 E-value=1.9e-19 Score=152.73 Aligned_cols=114 Identities=19% Similarity=0.413 Sum_probs=104.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~--~~~~ii 77 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKK--KDAKII 77 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHC--TTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccC--CCCeEE
Confidence 58999999999999999999999999999999999999998755 99999999999999999999998764 688999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
++|+..+.. .+++..|+++||.||++.++|..++++++
T Consensus 78 ~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 78 LLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred EEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 999886655 67889999999999999999999888763
No 68
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.81 E-value=6.1e-19 Score=154.12 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=112.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~ 107 (527)
.+++||||||++..+..++.+|+..||+|. .+.++.+|++.+.... ||+||+|+.|| +++|+++++.|++. +.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~---~~ 82 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAG---CN 82 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHH---SC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhC---CC
Confidence 357999999999999999999999999999 5999999999998755 99999999999 79999999999876 68
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 83 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 83 LPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp CCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999876543
No 69
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.80 E-value=2.4e-19 Score=168.60 Aligned_cols=120 Identities=19% Similarity=0.349 Sum_probs=111.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~i 79 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAIS--DGIPI 79 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 469999999999999999999999999999999999999987654 99999999999999999999998764 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|++.+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 80 i~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 80 VFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999888999999999999999999999999999988654
No 70
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.80 E-value=6.9e-19 Score=166.52 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=111.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++++||||||++..+..++.+|+.. +|.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~--~~ 79 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKS--LS 79 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSC--CC
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhC--CC
Confidence 3579999999999999999999986 4887 67999999999998755 99999999999999999999998753 68
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+|||++|+..+.+...+++..||++||.||++.++|..+|+.++++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 80 GRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp SEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred CcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 999999999999999999999999999999999999999999987653
No 71
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.80 E-value=1.2e-19 Score=188.70 Aligned_cols=124 Identities=23% Similarity=0.519 Sum_probs=109.7
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
|.+++++||||||++..+..++.+|+..||+|..+.++.+|++.++... |||||+|+.||+|||++++++|++.. +
T Consensus 1 M~~~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~--~ 76 (394)
T 3eq2_A 1 MHKVSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTA--S 76 (394)
T ss_dssp ---CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTT--C
T ss_pred CCCCCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhC--C
Confidence 3456789999999999999999999999999999999999999998765 99999999999999999999998763 7
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~-~~eeL~~~L~~v~rr~ 154 (527)
++|||++|++.+.+.+.++++.||+|||.||+ ..++|..+|++++++.
T Consensus 77 ~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 77 ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp CCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 89999999999999999999999999999999 6889998888887654
No 72
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.80 E-value=1.3e-18 Score=155.61 Aligned_cols=121 Identities=18% Similarity=0.369 Sum_probs=112.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~~~~i 82 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSY--PDIER 82 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHC--TTSEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhC--CCCcE
Confidence 579999999999999999999999999999999999999998755 99999999999999999999998754 68999
Q ss_pred EEEecCCCHHHHHHHHHcC-CCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRG-AADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~G-A~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.....+++..| +++||.||++.++|..+|++++++..
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 83 VVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 99999999999999999999886543
No 73
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.80 E-value=9.6e-19 Score=156.18 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=111.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
...+||||||++..+..++.+|+..|+. |..+.++.+|++.++... |||||+|+.||+++|++++++|++.. +.
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~--~~ 89 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYE--LP 89 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTT--CS
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CC
Confidence 4579999999999999999999998854 457999999999998765 99999999999999999999998764 78
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+|||++|+..+.....+++..||++||.||++.++|..+|+.++++...
T Consensus 90 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 138 (152)
T 3eul_A 90 TRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDV 138 (152)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC--
T ss_pred CeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCee
Confidence 9999999999999999999999999999999999999999999877644
No 74
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.80 E-value=6.5e-19 Score=157.44 Aligned_cols=122 Identities=16% Similarity=0.328 Sum_probs=112.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.+++||||||++..+..++.+|+. .||.++ .+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. +.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~--~~ 79 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWD--GA 79 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHC--TT
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhC--CC
Confidence 357999999999999999999998 799988 7999999999998765 99999999999999999999998864 68
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
+|||++|+..+.....+++..|+++||.||++.++|..+|++++++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 127 (153)
T 3cz5_A 80 ARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR 127 (153)
T ss_dssp CCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999876553
No 75
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.80 E-value=2.1e-19 Score=187.59 Aligned_cols=120 Identities=23% Similarity=0.364 Sum_probs=113.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++.++..++.+|+..||.|..+.++.+|++.++... ||+||+|+.||+|||++++++|++.. +.+|||
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~--~~~pvI 76 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENS--PDSVVI 76 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHC--TTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCeEE
Confidence 38999999999999999999999999999999999999998765 99999999999999999999998764 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
++|++.+.+.+.++++.||+|||.||++.++|..+|++++.+..
T Consensus 77 ~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 77 VITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp EEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred EEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999987654
No 76
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.80 E-value=4e-19 Score=174.79 Aligned_cols=120 Identities=23% Similarity=0.443 Sum_probs=112.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|+..||+|..+.++.+|++.++... ||+||+|+.||+|+|++++++|++.. +.+||
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~--~~~pi 204 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPV 204 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHH--CCSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcC--CCCcE
Confidence 579999999999999999999999999999999999999998765 99999999999999999999999865 58999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.+...++++.|+++||.||++.++|..+|++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887654
No 77
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.80 E-value=1.1e-18 Score=152.74 Aligned_cols=121 Identities=21% Similarity=0.366 Sum_probs=106.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC---CC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC---KN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~---~~ 107 (527)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+... +|+||+|+.||+++|+++++.|++.... ..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 83 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQR 83 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCC
Confidence 47999999999999999999999999999999999999988542 4999999999999999999999853211 12
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+||++|+..+.....++++.||++||.||++.++|..+|++++++.
T Consensus 84 ~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 84 PLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred ceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 36888999999999999999999999999999999999999887544
No 78
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.80 E-value=4e-19 Score=167.20 Aligned_cols=120 Identities=23% Similarity=0.366 Sum_probs=111.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
|..+||||||++..+..+..+|+..||.|+ .+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... ..
T Consensus 12 m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~---~~ 86 (205)
T 1s8n_A 12 VPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKR---IA 86 (205)
T ss_dssp CCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTT---CS
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcC---CC
Confidence 457999999999999999999999999988 8999999999998755 99999999999999999999998753 35
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|||++|++.+.....+++..||++||.||++.++|..+|++++++.
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988664
No 79
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.1e-18 Score=153.35 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=109.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC----CCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGR----PRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~----~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|++...
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 47999999999999999999999998 899999999999999851 024999999999999999999999987654
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
.+.+|||++|+..+.....++++.|+++||.||++.++|..++....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998877654
No 80
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.79 E-value=6e-19 Score=172.85 Aligned_cols=120 Identities=23% Similarity=0.421 Sum_probs=112.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++.++..++.+|+..||.|..+.++.+|++.+.... |||||+|+.||+++|++++++|++. +.+||
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~---~~~~i 111 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKN---SALPI 111 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTT---CCCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcC---CCCCE
Confidence 479999999999999999999999999999999999999998765 9999999999999999999999863 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.+.+.+++.+||++||.||++.++|..+|+.++++..
T Consensus 112 I~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 112 IVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp EEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999987643
No 81
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.79 E-value=1.5e-18 Score=155.40 Aligned_cols=121 Identities=17% Similarity=0.417 Sum_probs=112.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~--~~~pi 78 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALD--PDLPM 78 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHC--TTSCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCCE
Confidence 469999999999999999999999999999999999999987654 99999999999999999999998763 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.....+++..|+++||.||++.++|..+|++++++..
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 79 ILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887653
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.79 E-value=2.6e-18 Score=151.07 Aligned_cols=118 Identities=18% Similarity=0.269 Sum_probs=107.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+... +.+|||
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~--~~~~ii 76 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERW--PETVRI 76 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHC--TTSEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhC--CCCcEE
Confidence 47999999999999999999876 99999999999999998755 99999999999999999999998753 678999
Q ss_pred EEecCCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMR-GAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~-GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|+..+.....+++.. ||++||.||++.++|..++++++++.
T Consensus 77 ~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 77 IITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp EEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 99999888888888876 59999999999999999999887654
No 83
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.79 E-value=1.1e-18 Score=184.46 Aligned_cols=121 Identities=24% Similarity=0.404 Sum_probs=112.6
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+.... |||||+|+.||+|+|+++++.|++....+.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 58999999999999999999999999999999999999998755 9999999999999999999999986545689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|++.+.....+++++||++||.||++.++|..+|+.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887543
No 84
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=5.6e-19 Score=170.54 Aligned_cols=122 Identities=25% Similarity=0.489 Sum_probs=112.5
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..|+++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. +.
T Consensus 2 ~~m~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~---~~ 76 (238)
T 2gwr_A 2 DTMRQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRAD---SG 76 (238)
T ss_dssp CCCCCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTT---CC
T ss_pred CcccCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhC---CC
Confidence 346689999999999999999999999999999999999999998754 9999999999999999999999875 37
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
+|||++|+..+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 77 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 77 VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp CCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 89999999999888999999999999999999999999999987654
No 85
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.78 E-value=9.3e-19 Score=167.03 Aligned_cols=120 Identities=33% Similarity=0.461 Sum_probs=111.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. +.+|
T Consensus 3 M~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~---~~~~ 77 (230)
T 2oqr_A 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRAR---SSVP 77 (230)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHH---CSCS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcC---CCCC
Confidence 5689999999999999999999999999999999999999998754 9999999999999999999999874 5799
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....+++..||++||.||++.++|..+|++++++.
T Consensus 78 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 78 VIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp EEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999998889999999999999999999999999999998764
No 86
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.78 E-value=4.7e-18 Score=149.61 Aligned_cols=121 Identities=18% Similarity=0.355 Sum_probs=105.1
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
..+++||||||++..+..+..+|+.. ||.++ .+.++.+|++.+.... |||||+|+.||+++|+++++.|++.. +
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~--~ 82 (143)
T 2qv0_A 7 GEKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFA--H 82 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTST--T
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccC--C
Confidence 34589999999999999999999875 89854 7999999999998765 99999999999999999999998753 5
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
.+|||++|+..+ ...+++..|+++||.||++.++|..+|++++++..
T Consensus 83 ~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 83 KPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp CCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 678999998744 56789999999999999999999999999886653
No 87
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.78 E-value=4.6e-18 Score=147.06 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=108.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDGlelL~~Lr~~~~~~~i 108 (527)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+... ..||+||+|+.||+ ++|++++++|++.. +.+
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~--~~~ 80 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREID--PNM 80 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHC--TTC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcC--CCC
Confidence 357999999999999999999999999999999999999999875 13999999999997 99999999998764 689
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|||++|+..+.....+++..| +||.||++.++|..+|+++++...
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 81 PIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp CEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 999999998888877777765 899999999999999999987653
No 88
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.78 E-value=1.2e-18 Score=166.37 Aligned_cols=121 Identities=28% Similarity=0.441 Sum_probs=112.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
.++||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~--~~~~i 82 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMD--NDVPV 82 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTT--CCCCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCCCE
Confidence 369999999999999999999999999999999999999998765 99999999999999999999998764 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|++|+..+.....+++..||++||.||++.++|..+|+.++++..
T Consensus 83 i~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 999999988888899999999999999999999999999987754
No 89
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.77 E-value=2.4e-18 Score=163.34 Aligned_cols=118 Identities=22% Similarity=0.338 Sum_probs=109.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
|+++||||||++..+..+..+|+..| .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|++.. +.+|
T Consensus 1 Mm~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~--~~~~ 73 (220)
T 1p2f_A 1 MMWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETR--PETW 73 (220)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHC--TTSE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcC--CCCc
Confidence 56899999999999999999999988 888999999999877 3 399999999999999999999998764 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|+..+.....+++..||++||.||++.++|..+|+.++++.
T Consensus 74 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 74 VILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999998764
No 90
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.77 E-value=7.6e-19 Score=152.25 Aligned_cols=119 Identities=19% Similarity=0.281 Sum_probs=107.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
+++||||||++..+..++.+|+..++.|..+.++.+|++.+.. . ||+||+|+.||+++|++++++|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~--~~~~i 77 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHK--SPASL 77 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTT--CCCEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCC--CCCCE
Confidence 5799999999999999999999888899999999999987754 3 99999999999999999999998754 78999
Q ss_pred EEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~-----~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+. ....+++..|+++||.||++.++|..+|++++...
T Consensus 78 i~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 78 ILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 999998874 77778999999999999999999999999987554
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.77 E-value=2.6e-18 Score=180.28 Aligned_cols=119 Identities=23% Similarity=0.449 Sum_probs=111.4
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
++||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.||++||++++++|++.. +++|||
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~--~~~pvI 76 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERS--PETEVI 76 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHC--TTSEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhC--CCCcEE
Confidence 48999999999999999999999999999999999999998755 99999999999999999999998753 789999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
++|++.+.+.+.++++.||+|||.||++.++|..+|+++++..
T Consensus 77 vlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 77 VITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887543
No 92
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.77 E-value=2.1e-18 Score=153.98 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=101.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHc-CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SY-RVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy-~V~~a~dg~eALe~L~~-~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+++||||||++..+..++.+|+.. || .|..+.++.+|++.+.. .. ||+||+|+.||+++|+++++.|++. .+.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~--~~~ 78 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRF--DPS 78 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHH--CTT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHh--CCC
Confidence 469999999999999999999987 88 67889999999999987 54 9999999999999999999999876 368
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhcc
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSS 156 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~ 156 (527)
+|||++|+..+.....+++..|+++||.||++.++|..+|++++++...
T Consensus 79 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 79 NAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp SEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred CeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 9999999999889999999999999999999999999999999876644
No 93
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.77 E-value=2.2e-18 Score=151.76 Aligned_cols=120 Identities=23% Similarity=0.415 Sum_probs=103.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc---cCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE---ICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~---~~~ 106 (527)
|.++||||||++..+..++.+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|++++++|++.. ..+
T Consensus 9 ~~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 86 (140)
T 3c97_A 9 MPLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTK 86 (140)
T ss_dssp -CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCC
Confidence 4579999999999999999999999999999999999999998755 99999999999999999999998742 235
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
.+|||++|+........ ..|+++||.||++.++|..+|+.++.+.
T Consensus 87 ~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 87 RASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred ceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 78999999876544322 7899999999999999999999987654
No 94
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.76 E-value=5.8e-18 Score=154.31 Aligned_cols=128 Identities=24% Similarity=0.368 Sum_probs=101.7
Q ss_pred cchHHhhhcC---cCEEEEEecCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHH
Q 009734 21 AKWETFLQRM---ALRVLLVEADDSTRQIVTALLRKSS-YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFAL 95 (527)
Q Consensus 21 ~~~e~~~~~~---~lrVLLVDDD~~~r~~L~~lL~~~G-y~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlel 95 (527)
--|..+..+| +++||||||++..+..++.+|+..| +.+ ..+.++.+|++.+.... |||||+|+.||+++|+++
T Consensus 12 ~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l 89 (164)
T 3t8y_A 12 SGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEA 89 (164)
T ss_dssp ------------CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHH
T ss_pred CCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHH
Confidence 3455555554 4799999999999999999999875 444 46899999999998765 999999999999999999
Q ss_pred HHHHHhcccCCCCeEEEEecCCCH--HHHHHHHHcCCCEEEeCCCC---------HHHHHHHHHHHHHh
Q 009734 96 LTLVMEHEICKNIPVIMMSSQDSV--STVYKCMMRGAADYLVKPVR---------RNELRNLWQHVWRR 153 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa~~d~--~~~~~al~~GA~DyL~KP~~---------~eeL~~~L~~v~rr 153 (527)
+++|++.. + +|||++++..+. ..+.+++..||++||.||++ .++|..+|++++.+
T Consensus 90 ~~~lr~~~--~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 90 LKLIMKKA--P-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp HHHHHHHS--C-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred HHHHHhcC--C-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 99998764 4 899999997764 37779999999999999999 67777777766543
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.76 E-value=1.3e-17 Score=145.96 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=108.0
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC-
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK- 106 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~- 106 (527)
.....+||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+|| ||+++|+++++.|+.. +
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~---~~ 85 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEK---HS 85 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHH---ST
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhc---CC
Confidence 345689999999999999999999999999999999999999998765 99999 9999999999999876 5
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHhh
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~-~~eeL~~~L~~v~rr~ 154 (527)
.+|||++|+..+.....+++..|+++||.||+ +.++|..+|++++++.
T Consensus 86 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999 9999999999886543
No 96
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.76 E-value=2.9e-18 Score=174.72 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=109.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~-~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..+||||||++.++..++.+|. ..||.|..+.++.+|++.+.... |||||+|+.||+|||+++++.|+.....+.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 3579999999999999999996 46999999999999999998755 99999999999999999999998765457899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
||++|++.+...+.+++..||+|||.||++..+|..+++.+.+
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998887643
No 97
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.76 E-value=3e-18 Score=143.74 Aligned_cols=115 Identities=23% Similarity=0.300 Sum_probs=105.2
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
.+||||||++..+..+..+|+..||+|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++....+.+|||
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii 79 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPLV 79 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 58999999999999999999999999999999999999998755 9999999999999999999999987544689999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
++++..+.. .++..|+++||.||++..+|..++++++
T Consensus 80 ~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 80 LFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 999987766 8999999999999999999998887654
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.75 E-value=1.2e-18 Score=167.29 Aligned_cols=121 Identities=21% Similarity=0.317 Sum_probs=111.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS-YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G-y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++..+..++.+|+..| |.++ .+.++.+|++.+.... ||+||+|+.||+++|+++++.|++. .+.+
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~--~~~~ 76 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSR--MPDL 76 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHH--CTTC
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHh--CCCC
Confidence 3699999999999999999999886 8855 6999999999998755 9999999999999999999999875 3789
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
|||++|+..+.....+++..||++||.||++.++|..+|+.++++..
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 123 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS 123 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999987754
No 99
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.75 E-value=4.7e-18 Score=178.05 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=119.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHc-CCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~-~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++.++..++.+|+. .||.|..+.++.+|++.++. .. |||||+|+.||+|||++++++|+... +.+
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~~~--~DlvllDi~mP~~dG~ell~~l~~~~--~~~ 78 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGH--VDIAICDLQMSGMDGLAFLRHASLSG--KVH 78 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHHSC--EEEEEECSSCSSSCHHHHHHHHHHHT--CEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhCCC--CCEEEEeCCCCCCCHHHHHHHHHhcC--CCc
Confidence 47999999999999999999998 67899999999999999986 34 99999999999999999999998764 567
Q ss_pred eEEEEecCCCH-----HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhccccCCCccccchhhhHHHHHhhcccccc
Q 009734 109 PVIMMSSQDSV-----STVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAAS 183 (527)
Q Consensus 109 PVIilSa~~d~-----~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (527)
|||++|+.++. ..+.+++.+||++||.||++.++|..+|++++++........ ..........+..+..++...
T Consensus 79 ~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~al~~~~~~ 157 (400)
T 3sy8_A 79 SVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQDLPRQI-EVAELPSVADVVRGLDNGEFE 157 (400)
T ss_dssp EEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTTSCCCC----CCCCCHHHHHHHHHTTCEE
T ss_pred eEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhhhhhhhh-hhhcccHHHHHHHHHHCCcEE
Confidence 88888888776 678899999999999999999999999999987654321111 111122345556666665544
Q ss_pred c
Q 009734 184 N 184 (527)
Q Consensus 184 ~ 184 (527)
.
T Consensus 158 ~ 158 (400)
T 3sy8_A 158 A 158 (400)
T ss_dssp E
T ss_pred E
Confidence 3
No 100
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.75 E-value=1.4e-18 Score=166.39 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=106.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHH-hCCCEEEE-ECCHHHHHHH-HHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLR-KSSYRVTA-VPDGLKAWEV-LKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~-~~Gy~V~~-a~dg~eALe~-L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
++++||||||++.++..++.+|+ ..||.|+. +.++.+++.. +.... ||+||+|+.||+++|++++++|++. ..+
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~-~~~ 82 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHI-SCP 82 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHH-HCT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHh-hCC
Confidence 45899999999999999999998 46898865 4567766653 55443 9999999999999999999999872 237
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhc
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQS 155 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~ 155 (527)
++|||++|++.+......++..||++||.||++.++|..+|+.++++..
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 131 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEM 131 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCE
Confidence 8999999999998889999999999999999999999999999987654
No 101
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.74 E-value=6.4e-18 Score=149.67 Aligned_cols=114 Identities=20% Similarity=0.358 Sum_probs=95.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
...+||||||++..+..++.+|+.. ||.++ .+.++.+|++.+.... .|||||+|+.||+++|++++++|+... .
T Consensus 12 ~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~---~ 87 (145)
T 3kyj_B 12 SPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKT---R 87 (145)
T ss_dssp CSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHC---C
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcC---C
Confidence 4579999999999999999999988 89865 7999999999998761 399999999999999999999998764 3
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 108 iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
+|||++++ ..+...+.+++..||++||.||++..+|..++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 89999987 56667788999999999999999966665443
No 102
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.73 E-value=5e-18 Score=148.82 Aligned_cols=123 Identities=24% Similarity=0.292 Sum_probs=102.6
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHc-CCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKG-RPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~-~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
|...-.....+||||||++..+..++.+|+..||.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|++
T Consensus 7 ~~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~ 84 (138)
T 2b4a_A 7 HHHHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKE 84 (138)
T ss_dssp -------CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTT
T ss_pred hhccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 344445566899999999999999999999999999999999999999876 55 999999999999999999999987
Q ss_pred cccCCCCeEEEEe-cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 102 HEICKNIPVIMMS-SQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 102 ~~~~~~iPVIilS-a~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
. .+.+|||++| +..+... .+++ +++||.||++.++|..+|++++++
T Consensus 85 ~--~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 85 Q--TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp S--SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred h--CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 4 4689999999 8776655 5665 999999999999999999877543
No 103
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.73 E-value=2.1e-19 Score=153.27 Aligned_cols=120 Identities=24% Similarity=0.417 Sum_probs=109.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|++.. +.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~--~~~~i 78 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRH--PMLPV 78 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHC--TTSCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhC--CCCCE
Confidence 358999999999999999999999999999999999999987654 99999999999999999999998753 68999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
|++|+..+.....+++..|+++||.||++.++|..++++++++.
T Consensus 79 i~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99999988888889999999999999999999999999887653
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.72 E-value=1.5e-17 Score=155.37 Aligned_cols=116 Identities=10% Similarity=0.132 Sum_probs=104.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
..++||||||++..+..+..+|+..||.|+.+.++.+|+ .. .||+||+|+.||+++|+ +++.++... +.+|
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~~--~~dlvl~D~~mp~~~g~-l~~~~~~~~--~~~~ 81 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----DV--PVDVVFTSIFQNRHHDE-IAALLAAGT--PRTT 81 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----SS--CCSEEEEECCSSTHHHH-HHHHHHHSC--TTCE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----CC--CCCEEEEeCCCCccchH-HHHHHhccC--CCCC
Confidence 357999999999999999999999999999988887766 22 49999999999999999 888887653 6899
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
||++|++.+.+.+.+++..||++||.||++..+|..+|+.++.+.
T Consensus 82 ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 82 LVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887654
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.71 E-value=6.3e-17 Score=153.88 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=106.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|+||||||++..+..+..+|+..||.|..+.++.+|++.+.... ||+|| ||+++|+++++.|++. .+++|||
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~--~~~~~ii 72 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEK--HSSIVVL 72 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHH--CTTSEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhC--CCCCcEE
Confidence 47999999999999999999999999999999999999998654 99999 9999999999999876 2389999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHhh
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPV-RRNELRNLWQHVWRRQ 154 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~-~~eeL~~~L~~v~rr~ 154 (527)
++|+..+.....+++..||++||.||+ +.++|..+|+.++++.
T Consensus 73 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 73 VSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999 9999999999987654
No 106
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.65 E-value=1.9e-16 Score=156.40 Aligned_cols=104 Identities=19% Similarity=0.378 Sum_probs=87.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+.+||||||++.++..|...|.. .||.+..+ ++.+++..+... .||+||+|+.||++||++++++|++. .+|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~----~~p 76 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER----GLP 76 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT----TCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC----CCC
Confidence 46899999999999999999976 47877654 555665555443 49999999999999999999999863 589
Q ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHH
Q 009734 110 VIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141 (527)
Q Consensus 110 VIilSa~~d~~~~~~al~~GA~DyL~KP~~~e 141 (527)
||++|++.+.+...+++++||+|||.||+...
T Consensus 77 vi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 77 VVILTADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp EEEEECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred EEEEEccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 99999999999999999999999999997543
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.65 E-value=9.8e-16 Score=158.91 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=104.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS-SYR-VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~-Gy~-V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++||||||++..+..++.+|+.. ||+ |..+.++.+|++.++... ||+||+|+.||++||++++++|++.. + +
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~--p-~ 77 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLR--P-M 77 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSS--C-C
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcC--C-C
Confidence 479999999999999999999986 898 557999999999998755 99999999999999999999998764 4 8
Q ss_pred eEEEEecCCCH--HHHHHHHHcCCCEEEeCCCC---------HHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSV--STVYKCMMRGAADYLVKPVR---------RNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~--~~~~~al~~GA~DyL~KP~~---------~eeL~~~L~~v~rr~ 154 (527)
|||++|+..+. +...++++.||+|||.||++ .++|...|+++.+..
T Consensus 78 pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 78 PVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp CEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999998765 45889999999999999998 378888888876543
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.61 E-value=6.3e-16 Score=175.21 Aligned_cols=120 Identities=13% Similarity=0.210 Sum_probs=109.9
Q ss_pred CEEEEEecCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCC----CCHHHHHHHH
Q 009734 32 LRVLLVEADD-ST-------RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPS----ISGFALLTLV 99 (527)
Q Consensus 32 lrVLLVDDD~-~~-------r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~----mDGlelL~~L 99 (527)
|+|||||||+ .. ++.|+..|+..||+|..+.++.+|+..++... .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 3899999999 88 99999999999999999999999999998642 3999999999999 9999999999
Q ss_pred HhcccCCCCeEEEEecCCC-HHHHHHHHHcCCCEEEeCCCCHHH-HHHHHHHHHHhh
Q 009734 100 MEHEICKNIPVIMMSSQDS-VSTVYKCMMRGAADYLVKPVRRNE-LRNLWQHVWRRQ 154 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d-~~~~~~al~~GA~DyL~KP~~~ee-L~~~L~~v~rr~ 154 (527)
|+.. +++||||+|+.++ .+.....+..||+|||.||++..+ |..+|+.+++|.
T Consensus 80 R~~~--~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQ--QNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHS--TTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 9864 5799999999887 778888999999999999999999 888999988775
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.24 E-value=1.1e-10 Score=123.26 Aligned_cols=161 Identities=18% Similarity=0.237 Sum_probs=120.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||+|||+...+..+...|.. .+.+....++.+++.. ... .||+|++|+.||+|+|+++++.|+.......+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~-~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS-AGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH-HHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh-ccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 46899999999999888888865 4677778888888633 333 3899999999999999999999998776678999
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhhccccCCCccccchhhhHHHHHhhcccccccccchhh
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQSSMVSGNETQDESVGQQKIEATSENDAASNHSSGYM 190 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 190 (527)
|++|+........+++..|++||+.||+...++...+..+.++.... ..+.... .........+.+
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~~-------------~~l~~~~-~~~~~~~~~D~l 293 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYT-------------DYLRNNL-DHSLELAVTDQL 293 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHH-------------HHHHSSS-SCCSTTCCBCTT
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHH-------------HHHHHHH-HhHHHHHhcCcc
Confidence 99999999999999999999999999999999988887766543211 1111110 011112233456
Q ss_pred HhhhcchhHhhcCcccccc
Q 009734 191 ACIQSKGEFIEKGSDEQSS 209 (527)
Q Consensus 191 ~~l~~~~~~~e~gs~~~ss 209 (527)
+.+.++..|.+........
T Consensus 294 Tgl~nr~~~~~~l~~~~~~ 312 (459)
T 1w25_A 294 TGLHNRRYMTGQLDSLVKR 312 (459)
T ss_dssp TCCBCHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHHHHHHHHHH
Confidence 6777777777666555443
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.11 E-value=6.4e-11 Score=112.43 Aligned_cols=93 Identities=20% Similarity=0.354 Sum_probs=76.8
Q ss_pred EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 57 RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 57 ~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.|..+.++.+|++.+.... |||||+|+.||+++|++++++|++.. +..++++++.....+...++++.|+++||.|
T Consensus 7 ~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~k 82 (237)
T 3cwo_X 7 IVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVN 82 (237)
T ss_dssp EEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHHHTTCCEEEES
T ss_pred EEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHHHCCHHheEeC
Confidence 4445789999999998755 99999999999999999999998764 3455666666666889999999999999999
Q ss_pred C--CCHHHHHHHHHHHHHh
Q 009734 137 P--VRRNELRNLWQHVWRR 153 (527)
Q Consensus 137 P--~~~eeL~~~L~~v~rr 153 (527)
| ++..+|...+.+.+..
T Consensus 83 p~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 83 TAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp HHHHHCTHHHHHHHHHHTG
T ss_pred CcccChHHHHHHHHHHhCC
Confidence 9 7777888877776644
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.23 E-value=0.00034 Score=78.96 Aligned_cols=105 Identities=10% Similarity=0.119 Sum_probs=78.9
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 44 RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
...|...|++.||+|+.+.++.+|+..++... .+++||+|+.|+ +.+++++||+.. .++||++++.......+.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~--~~iPVFl~~~~~~~~~~~ 92 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMN--ENLPLYAFANTYSTLDVS 92 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHC--TTCEEEEECCTTCCCCGG
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 34566888889999999999999999998763 599999999986 789999998875 699999999875433221
Q ss_pred HHHHcCCCEEEeCCCCHHH-HHHHHHHHHHhh
Q 009734 124 KCMMRGAADYLVKPVRRNE-LRNLWQHVWRRQ 154 (527)
Q Consensus 124 ~al~~GA~DyL~KP~~~ee-L~~~L~~v~rr~ 154 (527)
-....++++|+.+..+..+ +...|.+..++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 124 (715)
T 3n75_A 93 LNDLRLQISFFEYALGAAEDIANKIKQTTDEY 124 (715)
T ss_dssp GTTSCCEEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhccCeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1123578999998875444 445555554443
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.14 E-value=0.00044 Score=67.22 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=70.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
..+||||||++..+..|..+|+.+|++|..+.+. . ...+|+||+|+.||...+. ..+
T Consensus 11 ~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~-------~--~~~~~~ii~d~~~~~~~~~--------------~~~ 67 (254)
T 2ayx_A 11 GKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ-------E--PTPEDVLITDEVVSKKWQG--------------RAV 67 (254)
T ss_dssp TEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC-------C--CCTTCEEEEESSCSCCCCS--------------SEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC-------C--CCcCcEEEEcCCCcccccc--------------ceE
Confidence 4799999999999999999999999999887641 1 2349999999999876431 135
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
|.++...... ....+...++.||+...+|...+.+++.
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 5566542110 0123456899999999999888887764
No 113
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.94 E-value=0.0023 Score=54.81 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=83.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCC-CCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL-PSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M-P~mDGlelL~~Lr~~~~~~~i 108 (527)
.+..||+|-.|-...-.++.++....|+++...... .. ..-|+|+|++-+ |. .|...++....
T Consensus 11 ~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~-------~e-~~AdlIfCEYlLLPe--------~ifS~k~~~~~ 74 (121)
T 3q7r_A 11 GPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYK-------QE-LSADLVVCEYSLLPR--------EIRSPKSLEGS 74 (121)
T ss_dssp CCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCC-------CC-TTEEEEEEEGGGSCT--------TCCCCTTCCSC
T ss_pred CCcEEEEEecCchhhHHHHHhcCCcceeEEeccccC-------Cc-ccceeEEEeeecChH--------HhcCCCCCCcc
Confidence 357899999999999999999988889988865322 11 237999999844 43 23444444555
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
-+|++=..=+.+.+++.+..||. ||..|++..-|.++|+..++..
T Consensus 75 dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 75 FVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred cEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 66666666678899999999999 9999999999999999888754
No 114
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.27 E-value=0.0095 Score=55.68 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=61.5
Q ss_pred CHHHHHHHHHcCCCCceEEEEeC-CCCCCCHHH--HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE-----
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEV-DLPSISGFA--LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL----- 134 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl-~MP~mDGle--lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL----- 134 (527)
+..+.++.+.... ..+++++++ .++.++|+. ++++++. ..++|||.+++....+...++++.||++++
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~---~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHH---hcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence 4456656555432 257999997 677777754 5555544 358999999999999999999999999995
Q ss_pred -eCCCCHHHHHHHHH
Q 009734 135 -VKPVRRNELRNLWQ 148 (527)
Q Consensus 135 -~KP~~~eeL~~~L~ 148 (527)
.+|++..++...++
T Consensus 207 ~~~~~~~~~~~~~l~ 221 (237)
T 3cwo_X 207 HFREIDVRELKEYLK 221 (237)
T ss_dssp HTTSSCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHH
Confidence 67999999876544
No 115
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.50 E-value=0.31 Score=44.55 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=84.1
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~ 101 (527)
..+||+. |-++.=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+-..|.. + .--++++.|++
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4688888 778888889999999999999863 47788888888755 999999887653 2 23466677776
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
... ++++|++ .+..-......+...|++.++..--+..+....++.++..
T Consensus 96 ~g~-~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~ 145 (161)
T 2yxb_A 96 LGA-DDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEE 145 (161)
T ss_dssp TTC-TTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCC-CCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHH
Confidence 432 3567664 5554444444567899998676555666666666666544
No 116
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.20 E-value=1.1 Score=44.53 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
.....+.|.+.||.|. ++.+...|.++.+. . +++| +.+..| ++.-+++++.|++. .++|||+=.+-
T Consensus 124 tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~-G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPVI~eGGI 196 (265)
T 1wv2_A 124 TLKAAEQLVKDGFDVMVYTSDDPIIARQLAEI-G--CIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPVLVDAGV 196 (265)
T ss_dssp HHHHHHHHHTTTCEEEEEECSCHHHHHHHHHS-C--CSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHh-C--CCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCEEEeCCC
Confidence 3344556667799977 45677766665543 3 6777 555554 23337899999874 57999987778
Q ss_pred CCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHH
Q 009734 117 DSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVW 151 (527)
Q Consensus 117 ~d~~~~~~al~~GA~DyL~K-----P~~~eeL~~~L~~v~ 151 (527)
...+.+..++++||+..++- --++..+...+..++
T Consensus 197 ~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 197 GTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp CSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 89999999999999998754 444555555554443
No 117
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.06 E-value=1.7 Score=38.42 Aligned_cols=108 Identities=8% Similarity=-0.046 Sum_probs=73.1
Q ss_pred cCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEE
Q 009734 39 ADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 39 DD~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~~~~~~~iPVIil 113 (527)
-+..=...+..+|+..||+|+. ....++.++.+.+.. +|+|.+-..|.. +. --++++.|++... ++++|++
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~-~~i~v~v- 90 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGL-EGILLYV- 90 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTC-TTCEEEE-
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCC-CCCEEEE-
Confidence 4556666788899999999884 457888888887655 999999887753 21 2356777776542 3577654
Q ss_pred ecC-----CCHH-HHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 114 SSQ-----DSVS-TVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 114 Sa~-----~d~~-~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
.+. .+.. ....+.++|++.|+.---+..++...+...
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~ 133 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKD 133 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 443 2222 245678999998887666777766555543
No 118
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.99 E-value=0.98 Score=43.63 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=68.8
Q ss_pred CEEEEEec----CHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCC------CCCCCHHHHHHHHH
Q 009734 32 LRVLLVEA----DDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVD------LPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDD----D~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~------MP~mDGlelL~~Lr 100 (527)
..+++++- ++.....+.+.+++.|..+.. +.+.+++....+.. +|+|.+-+. .+..-+++++++++
T Consensus 102 ad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G---ad~Ig~~~~g~t~~~~~~~~~~~li~~l~ 178 (229)
T 3q58_A 102 ADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKG---IEFIGTTLSGYTGPITPVEPDLAMVTQLS 178 (229)
T ss_dssp CSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTSSSSCCCSSCCHHHHHHHH
T ss_pred CCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCC---CCEEEecCccCCCCCcCCCCCHHHHHHHH
Confidence 34455542 343444455555666877554 78888888777643 799865321 23344689999987
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+. ++|||.-.+-.+.+.+.+++.+||+.+++=
T Consensus 179 ~~----~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 179 HA----GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp TT----TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hc----CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 53 789999999889999999999999999864
No 119
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=91.76 E-value=0.7 Score=43.53 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=70.2
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~ 101 (527)
..+||+. |-+..-...+..+|+..||+|.... ..++.++.++... ||+|.+-..|+. +. --++++.|++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4578888 6778888899999999999998632 5666677776654 999999887764 33 3466777876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
....+++||++--..-+.+.. ...|++.|..-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECC
Confidence 543345787765544454433 55798876543
No 120
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=90.77 E-value=2 Score=47.65 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=84.8
Q ss_pred hhhcCcCEEEEE----ecCHHHHHHH----HHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC----C
Q 009734 26 FLQRMALRVLLV----EADDSTRQIV----TALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS----I 90 (527)
Q Consensus 26 ~~~~~~lrVLLV----DDD~~~r~~L----~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~----m 90 (527)
+.+....+||+. |-+..=...+ ..+|+..||+|+.. ...++.++.+.+.. +|+|.+-.-|.. +
T Consensus 597 ~i~e~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL 674 (763)
T 3kp1_A 597 DIEKTPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHY 674 (763)
T ss_dssp HHHHSCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHH
T ss_pred hhhccCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhH
Confidence 344456788888 4444433333 57899999999863 37888888888765 999999988876 4
Q ss_pred CHH-HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 91 SGF-ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 91 DGl-elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
..+ ++++.|++......++||+=-+.-..+. +...||+.|........++...|...++..
T Consensus 675 ~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 675 KNMKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 443 5777787765433467665333344443 458999999988888888877766665544
No 121
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.64 E-value=1.7 Score=42.02 Aligned_cols=89 Identities=15% Similarity=0.088 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCC------CCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 41 DSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVD------LPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~------MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
|.....+.+.+++.|..+.. +.+.+++.+..+. . +|+|.+.+. .+..-+++++++++.. ++|||.-
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~-G--ad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~ipvIA~ 187 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADCSSVDDGLACQRL-G--ADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GCRVIAE 187 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT-T--CSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC-C--CCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CCcEEEE
Confidence 43444455555666876554 7888888777664 3 798864321 1233468999998763 7899999
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (527)
.+-.+.+.+.+++.+||+.+++=
T Consensus 188 GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 188 GRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp SCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCHHHHHHHHHcCCCEEEEe
Confidence 99889999999999999999864
No 122
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=89.20 E-value=5 Score=39.69 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=67.7
Q ss_pred CEEEEEec--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccC
Q 009734 32 LRVLLVEA--DDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 32 lrVLLVDD--D~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl---~MP~mDGlelL~~Lr~~~~~ 105 (527)
--|+|+.. ++.....+....+..|..+. .+.+.+++...++. . +|+|-+.- ..... +++.+.+|... ..
T Consensus 137 D~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~-v~ 211 (272)
T 3qja_A 137 DMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPG-LP 211 (272)
T ss_dssp SEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGG-SC
T ss_pred CEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHh-Cc
Confidence 45666432 33334445556667898754 48888887776654 2 78887752 22222 35667777543 22
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.++|||..++-.+.+.+.++..+|++.+++-
T Consensus 212 ~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 212 SSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp TTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred ccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3789999999888999999999999999864
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=89.00 E-value=3 Score=40.73 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=74.5
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCH-HHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISG-FALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDG-lelL~~Lr~ 101 (527)
..+||+. |-+..-...+..+|+..||+|+. -...++.++.++... ||+|.+-..|+. +.. -++++.|++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHHHh
Confidence 4678888 66778888999999999999864 246777777777654 999999887764 443 467788876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
.. +++||++--..-..+. +...|++.|-... .+....++.++
T Consensus 201 ~~--~~~~v~vGG~~~~~~~---~~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 201 NG--IKIPFACGGGAVNQDF---VSQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TT--CCCCEEEESTTCCHHH---HHTSTTEEECSST---THHHHHHHHHH
T ss_pred cC--CCCcEEEECccCCHHH---HHHcCCeEEECCH---HHHHHHHHHHH
Confidence 54 4577776544444443 2378986665433 34444444444
No 124
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=88.77 E-value=1.3 Score=42.43 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=71.4
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEE--eCCCC-CCC-HHHHHHHH
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILT--EVDLP-SIS-GFALLTLV 99 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLl--Dl~MP-~mD-GlelL~~L 99 (527)
..+||+. |-+..=...+..+|+..||+|+.. ...++.++.+.+.. ||+|.+ -..|. .+. --++++.|
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~l 169 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDRL 169 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHHH
Confidence 3578877 667788888999999999998863 36777778888765 999999 77664 333 35677888
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++.....++||++=-+.-..+. +...||+.|-..
T Consensus 170 ~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~d 203 (215)
T 3ezx_A 170 NEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAEN 203 (215)
T ss_dssp HHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSS
T ss_pred HHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECC
Confidence 7764323688776555455543 345799887543
No 125
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=88.55 E-value=4.3 Score=40.17 Aligned_cols=116 Identities=8% Similarity=0.016 Sum_probs=78.4
Q ss_pred cCEEEEE----ecCHHHHHHHHHH--------HHhC-CCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC----C
Q 009734 31 ALRVLLV----EADDSTRQIVTAL--------LRKS-SYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS----I 90 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~l--------L~~~-Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~----m 90 (527)
..+||+. |-+..=...+..+ |+.. ||+|+.. ...++.++.+.+.. +|+|.+-..|.. +
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccchH
Confidence 4566664 5566666677777 9999 9999762 36777888887765 999999988875 2
Q ss_pred CH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 91 SG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 91 DG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
.. -++++.|++.....+++||+=-..-+.+ .+.+.|++.|..--....++...|...+
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~ 256 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTL 256 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHH
Confidence 32 2466777665433346775444333433 3667899988877777777766655444
No 126
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=86.06 E-value=1.4 Score=43.73 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=64.2
Q ss_pred HHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCCCC-----HHHHHHHHHhcccCCC-CeEEEEecCCCH
Q 009734 48 TALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS-----GFALLTLVMEHEICKN-IPVIMMSSQDSV 119 (527)
Q Consensus 48 ~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-----GlelL~~Lr~~~~~~~-iPVIilSa~~d~ 119 (527)
.+.|.+.||.|. +..|...|-++.+ .. +++| +.+..|-.. -.++++.|++.. .+ +|||+=.+-...
T Consensus 117 a~~L~k~Gf~Vlpy~~~D~~~ak~l~~-~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~--~~~vPVI~~GGI~tp 190 (268)
T 2htm_A 117 AERLIEEDFLVLPYMGPDLVLAKRLAA-LG--TATV-MPLAAPIGSGWGVRTRALLELFAREK--ASLPPVVVDAGLGLP 190 (268)
T ss_dssp HHHHHHTTCEECCEECSCHHHHHHHHH-HT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTT--TTSSCBEEESCCCSH
T ss_pred HHHHHHCCCEEeeccCCCHHHHHHHHh-cC--CCEE-EecCccCcCCcccCCHHHHHHHHHhc--CCCCeEEEeCCCCCH
Confidence 344556699876 4567655544443 33 6776 555554222 256688887632 46 999987788899
Q ss_pred HHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 009734 120 STVYKCMMRGAADYLV-----KPVRRNELRNLWQHVW 151 (527)
Q Consensus 120 ~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~ 151 (527)
+.+..++++||+..++ |.-++..+...+..++
T Consensus 191 sDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 191 SHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999874 4444555555555443
No 127
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=82.56 E-value=12 Score=37.00 Aligned_cols=99 Identities=13% Similarity=0.067 Sum_probs=65.9
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCC
Q 009734 33 RVLLVEA--DDSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 33 rVLLVDD--D~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl---~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.|||+-. ++.....+....+..|..+. .+.+.+++...+.. .+|+|=+.- .--..| ++...+|... ...
T Consensus 145 ~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~-ip~ 219 (272)
T 3tsm_A 145 CILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKM-APS 219 (272)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHH-SCT
T ss_pred EEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHh-CCC
Confidence 4555532 23334445555567899754 58999998776653 378887652 112233 4555566543 224
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++|+|.-++-.+.+.+.++..+|++.+|+-
T Consensus 220 ~~~vIaesGI~t~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 220 DRLLVGESGIFTHEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp TSEEEEESSCCSHHHHHHHHTTTCCEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 789999999999999999999999999863
No 128
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.54 E-value=2.7 Score=42.94 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRK---SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~---~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
.+.|++++.|+|.|+...+.|..+|.+ ..|+|..+++.+.+.+.++... +||+|+|-.++.-. ..+
T Consensus 17 ~~~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-----~~~---- 85 (373)
T 3fkq_A 17 FQGMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-----SEF---- 85 (373)
T ss_dssp ---CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-----GGG----
T ss_pred ccCceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-----hhh----
Confidence 456789999999999999999999954 3678999999999999998755 99999998776521 111
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
....+|++++.....+ ...-...+.|--..+++...+...+
T Consensus 86 -~~~~~v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 86 -KRNCGLAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp -CSSCEEEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred -cccCcEEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 1245676666543211 0112246888888888876666554
No 129
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=81.06 E-value=13 Score=34.39 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=67.3
Q ss_pred CEEEEEecCH--HHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHcCCCCceEEEEeCCCC----CCCHHHHHHHHHh
Q 009734 32 LRVLLVEADD--STRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILTEVDLP----SISGFALLTLVME 101 (527)
Q Consensus 32 lrVLLVDDD~--~~r~~L~~lL~~~Gy~V~~a----~dg~eALe~L~~~~~~pDLVLlDl~MP----~mDGlelL~~Lr~ 101 (527)
...++|-+.+ .....+.+.+++.|..+... .+..+.++.+.... .|.|.++.... ...+++.+++|++
T Consensus 78 ad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~~ 155 (211)
T 3f4w_A 78 ADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITMLK 155 (211)
T ss_dssp CSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHHH
T ss_pred CCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHHH
Confidence 4455555543 33455666667778776542 34434344443333 68887762210 1135778888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHV 150 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v 150 (527)
.. +++||++-.+-. .+.+.+++++||+.+++ +.-++.+....++..
T Consensus 156 ~~--~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~ 206 (211)
T 3f4w_A 156 VR--RKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQV 206 (211)
T ss_dssp HC--SSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHH
T ss_pred Hc--CCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHH
Confidence 52 478888766664 77888899999999865 344554444444433
No 130
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=80.87 E-value=19 Score=37.65 Aligned_cols=103 Identities=13% Similarity=0.126 Sum_probs=69.2
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCC-----------CCCCCHH
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD-----------LPSISGF 93 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~-----------MP~mDGl 93 (527)
...++++| +.....+.++.+-+..+..|. .+.+.++|..+++.. .|.|++-.. -.+.-.+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aG---AD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTT---CSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcC---CCEEEEeCCCCcCcccccccccchhHH
Confidence 46777775 233445566555555577665 478999988877643 799988321 0112346
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.++..+.+.....++|||.-.+-.+...+.+++.+||+...+=
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6677775432224799998888888999999999999888643
No 131
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=79.04 E-value=1.4 Score=43.57 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=48.5
Q ss_pred cCEEEEEecC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEAD--DSTRQIVTALLRKSSYRVTAVPDGLK--AWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDDD--~~~r~~L~~lL~~~Gy~V~~a~dg~e--ALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~ 105 (527)
|.+||||+++ +.....|..+|+..||+|.......- -.+.|. .||+||++-... .++- +.++.|++- ..
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~d~~~~~l~~-~~~~~L~~y-V~ 77 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILSDYPAERMTA-QAIDQLVTM-VK 77 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEESCCGGGBCH-HHHHHHHHH-HH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEcCCccccCCH-HHHHHHHHH-HH
Confidence 4699999988 66788999999999999887653221 123443 289998873222 1332 233333321 11
Q ss_pred CCCeEEEEecCC
Q 009734 106 KNIPVIMMSSQD 117 (527)
Q Consensus 106 ~~iPVIilSa~~ 117 (527)
..--+|++.+..
T Consensus 78 ~GGgLi~~gG~~ 89 (259)
T 3rht_A 78 AGCGLVMLGGWE 89 (259)
T ss_dssp TTCEEEEECSTT
T ss_pred hCCeEEEecCcc
Confidence 245688776654
No 132
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=78.23 E-value=14 Score=34.55 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=53.1
Q ss_pred CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH
Q 009734 55 SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM 126 (527)
Q Consensus 55 Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al 126 (527)
|..+. .+.+..++.+.... . .|.|+++-..+. .-|++.++.+++.. ++|||+..+- +.+.+.+++
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~-g--aD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~nv~~~~ 182 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE-D--ADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPDRLRDVK 182 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT-T--CSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGGGHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHhC-C--CCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHHHHH
Confidence 55433 46788888776653 2 799999765432 23678888886542 7899988877 788889999
Q ss_pred HcCCCEEEe
Q 009734 127 MRGAADYLV 135 (527)
Q Consensus 127 ~~GA~DyL~ 135 (527)
..||+.+.+
T Consensus 183 ~~Ga~gv~v 191 (221)
T 1yad_A 183 QAGADGIAV 191 (221)
T ss_dssp HTTCSEEEE
T ss_pred HcCCCEEEE
Confidence 999998864
No 133
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=78.17 E-value=15 Score=35.69 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=60.0
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCE
Q 009734 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (527)
Q Consensus 60 ~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~D 132 (527)
.+.+.+++.+..+. . +|.|.+.-..|. .-|++.+++++... ..++|||.+.+- +.+.+.+++..||+.
T Consensus 141 S~ht~~Ea~~A~~~-G--aDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~aGa~g 215 (243)
T 3o63_A 141 STHDPDQVAAAAAG-D--ADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLDAGARR 215 (243)
T ss_dssp EECSHHHHHHHHHS-S--CSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCC
T ss_pred eCCCHHHHHHHhhC-C--CCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHHcCCCE
Confidence 47889998877664 2 899998654443 23788889887541 137899999887 677788999999999
Q ss_pred EEe-----CCCCHHHHHHHHHHHH
Q 009734 133 YLV-----KPVRRNELRNLWQHVW 151 (527)
Q Consensus 133 yL~-----KP~~~eeL~~~L~~v~ 151 (527)
+.+ +.-++.+....+...+
T Consensus 216 vav~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 216 IVVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp EEESHHHHTCSSHHHHHHHHHHHH
T ss_pred EEEeHHHhCCCCHHHHHHHHHHHH
Confidence 875 4445555444444443
No 134
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=77.82 E-value=16 Score=41.42 Aligned_cols=120 Identities=8% Similarity=-0.039 Sum_probs=81.9
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~ 101 (527)
..+|||. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-.-|.. + ..-++++.|++
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4677776 345555667778999999999873 36788888887765 999999876653 2 24567788877
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
... .+++|| +.+..-......+.+.|++.|+..--+..+....+...+...
T Consensus 682 ~G~-~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 682 LGR-PDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TTC-TTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCC-CCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 643 355444 454222223345678999999986668888777777666443
No 135
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=77.50 E-value=14 Score=36.76 Aligned_cols=84 Identities=13% Similarity=0.142 Sum_probs=69.2
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+..+.|-+.-.++.....+..+|...-|.++.+.+..+.++.++.+.+.+|++|+... +..-..++.+|.+... -+
T Consensus 7 ~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~--lL 82 (289)
T 1r8j_A 7 LSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGV--VV 82 (289)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTC--CC
T ss_pred ccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCc--cc
Confidence 3457888899999999999999988889999999999999999888788999998751 3346778888887653 57
Q ss_pred eEEEEecC
Q 009734 109 PVIMMSSQ 116 (527)
Q Consensus 109 PVIilSa~ 116 (527)
|+|++...
T Consensus 83 P~vil~~~ 90 (289)
T 1r8j_A 83 PAIVVGDR 90 (289)
T ss_dssp CEEEESCC
T ss_pred cEEEeccC
Confidence 99988654
No 136
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=76.91 E-value=14 Score=41.62 Aligned_cols=118 Identities=10% Similarity=0.009 Sum_probs=80.6
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~ 101 (527)
..+|||. |.+..=...+..+|+..||+|+.. ...++.++.+.+.. +|+|.+-.-|.. + ..-++++.|++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4677776 455566667778899999999874 36788888887765 999999877653 2 24577788877
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
... .+++| ++-+..-......+.+.|++.|+.---+..++...|...++
T Consensus 674 ~G~-~~i~V-ivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 674 LGR-PDILI-TVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp TTC-TTSEE-EEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCC-CCCEE-EEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 643 34444 44543222233456889999999876777777666655543
No 137
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=76.77 E-value=39 Score=29.75 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=72.7
Q ss_pred cCEEEEEecCH-HHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADD-STRQIVTALLRKSSYRVTA---VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~~---a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
..+++|+.+.+ .....+..+++..+ .|.. .-+..+..+++.. .|++|+-... ..-|+-+++.+..
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a~----- 138 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMCL----- 138 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHHT-----
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHHC-----
Confidence 57888887644 35667888888776 4544 3355577777753 6888885443 3336777877742
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
.+|||+. .. ....+.+ .|..+++..|-+.++|...|..++.
T Consensus 139 G~PvI~~-~~---~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 139 GAIPIAS-AV---GGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp TCEEEEE-SC---HHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEe-CC---CChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 5687754 22 2333444 6888999999999999999998875
No 138
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=76.66 E-value=27 Score=36.01 Aligned_cols=103 Identities=15% Similarity=0.188 Sum_probs=69.2
Q ss_pred CcCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC------------C
Q 009734 30 MALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------I 90 (527)
Q Consensus 30 ~~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------m 90 (527)
-...+++|| +.+...+.++.+-+.. +..|. .+.+.++|.++.+.. .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 346778875 3455555566665554 56654 378999998887653 799988321 22 2
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..+.++..+.+.....++|||..-+-.+...+.+++.+||+...+=
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3456666665422123789998888888899999999999887643
No 139
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=76.10 E-value=19 Score=32.95 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCCC-------CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHH
Q 009734 54 SSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLPS-------ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKC 125 (527)
Q Consensus 54 ~Gy~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-------mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~a 125 (527)
.+..+ +.+.+..++.+.... . +|.|+++-..|. .-+++.++++++.. ++||++..+-. .+.+.++
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~~-g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~ 179 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEKK-G--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREV 179 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHHH-T--CSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHH
T ss_pred CCCEEEEecCCHHHHHHHHhc-C--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHH
Confidence 34433 236778887665543 2 899998765553 35788999887642 78998877766 7777788
Q ss_pred HHcCCCEEEe
Q 009734 126 MMRGAADYLV 135 (527)
Q Consensus 126 l~~GA~DyL~ 135 (527)
+..|++.+.+
T Consensus 180 ~~~Ga~gv~v 189 (215)
T 1xi3_A 180 LKTGVDGIAV 189 (215)
T ss_dssp HTTTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 8999999854
No 140
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=75.88 E-value=8.2 Score=37.35 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=73.5
Q ss_pred CccccChhhhhhhc---------cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHh-CCCEEEE------E--CC
Q 009734 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTA------V--PD 63 (527)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~------a--~d 63 (527)
|.++|+.+|++-|. +.+++|= = .|=+|-......++.+++. .|+.|+. + .+
T Consensus 66 GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~----------G-~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d 134 (224)
T 2bdq_A 66 GNFVYNDLELRIMEEDILRAVELESDALVL----------G-ILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSD 134 (224)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHTTCSEEEE----------C-CBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTT
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEE----------e-eECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcC
Confidence 67899999999887 2222220 0 0012333334445555543 3566654 4 78
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH-HcCCCEEEeC
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM-MRGAADYLVK 136 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP---~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al-~~GA~DyL~K 136 (527)
..+|++.|.... +|=||+.=.-+ -.+|+++|++|.+... .-..||.-+--..+.+.+.+ ..|+..|-..
T Consensus 135 ~~~ale~L~~lG--v~rILTSG~~~~~~a~~g~~~L~~Lv~~a~--~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 135 QKKSIDQLVALG--FTRILLHGSSNGEPIIENIKHIKALVEYAN--NRIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp HHHHHHHHHHTT--CCEEEECSCSSCCCGGGGHHHHHHHHHHHT--TSSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHHcC--CCEEECCCCCCCCcHHHHHHHHHHHHHhhC--CCeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 899999998865 99999975555 4899999999976532 22344443333444444444 5788888644
No 141
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=75.46 E-value=49 Score=30.69 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=38.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|..+|+++-..+..+..+..++...+.++.. ..+.+++++..+.....+|+||.
T Consensus 3 ~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 3 LSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 5578899988888888888888876666544 45677777665542234788876
No 142
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=75.43 E-value=10 Score=36.99 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d------~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
.+++++.+++. .+++||++|+-... ...+..|.+.|+++++.-.+..+++...+..+
T Consensus 81 ~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 81 VLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 45667788764 24789999854331 35567788999999999888888776655544
No 143
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=72.45 E-value=6.8 Score=38.32 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCC-C---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc
Q 009734 55 SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-P---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR 128 (527)
Q Consensus 55 Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~M-P---~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~ 128 (527)
|+.+. .+.+..++.+..+.. .|.|+.=... + +..+.++++++++. .++|||+..+-.+.+.+.+++.+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~g---ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~ 199 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEELG---VHAIMPGASPIGSGQGILNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMEL 199 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHHT---CSCBEECSSSTTCCCCCSCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHT
T ss_pred CeEEEEEcCCCHHHHHHHHHhC---CCEEEECCcccCCCCCCCCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHc
Confidence 77655 355776666555433 5666330000 1 23357888998864 47999999998889999999999
Q ss_pred CCCEEEeC
Q 009734 129 GAADYLVK 136 (527)
Q Consensus 129 GA~DyL~K 136 (527)
||+.+++=
T Consensus 200 GAdgViVG 207 (264)
T 1xm3_A 200 GADGVLLN 207 (264)
T ss_dssp TCSEEEES
T ss_pred CCCEEEEc
Confidence 99999754
No 144
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=72.17 E-value=28 Score=34.26 Aligned_cols=108 Identities=11% Similarity=0.103 Sum_probs=71.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+. ..++.+++...-.|.. .-+..+..+++.. .|++|+-..-.+.-|+-+++.+.. .+
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a~-----G~ 308 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMAA-----GT 308 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHHH-----TC
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHHc-----CC
Confidence 578888887766 5666666543222333 3355666677764 578887532123336677877743 56
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||+.. .....+.+..|..+++.+|-+.++|...|..++..
T Consensus 309 PvI~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 309 AVVASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EEEECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred CEEEec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 887532 24455677778899999999999999999988753
No 145
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=71.58 E-value=7.2 Score=39.03 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=50.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~ 101 (527)
.-++.+||-++.....|++-++...--.+...|+.+++..+......+|+||+|=--. ..+.-.+++.|.+
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~ 184 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKN 184 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHH
Confidence 3799999999999999999887643223345789999887765434599999995343 2345566666654
No 146
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=71.06 E-value=35 Score=29.16 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=57.0
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHHHhccc
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEI 104 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~Lr~~~~ 104 (527)
+......|++||.++...+.+. ..|+.++... .-.+.|+.+.- ...|+||+-+ |.. .-..++..++..
T Consensus 26 L~~~g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i--~~ad~vi~~~--~~~~~n~~~~~~a~~~-- 95 (140)
T 3fwz_A 26 LLASDIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHL--ECAKWLILTI--PNGYEAGEIVASARAK-- 95 (140)
T ss_dssp HHHTTCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTG--GGCSEEEECC--SCHHHHHHHHHHHHHH--
T ss_pred HHHCCCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCc--ccCCEEEEEC--CChHHHHHHHHHHHHH--
Confidence 3445678999999987665443 3678766532 22334443322 2378888754 332 223344555544
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+.||.... +.+......++|++..+
T Consensus 96 ~~~~~iiar~~--~~~~~~~l~~~G~d~vi 123 (140)
T 3fwz_A 96 NPDIEIIARAH--YDDEVAYITERGANQVV 123 (140)
T ss_dssp CSSSEEEEEES--SHHHHHHHHHTTCSEEE
T ss_pred CCCCeEEEEEC--CHHHHHHHHHCCCCEEE
Confidence 35677776553 45666677789998766
No 147
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=70.64 E-value=39 Score=33.61 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=59.3
Q ss_pred HHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC----C---CCHHHHHHHHHhcccCCCCeEEEEecCCCH
Q 009734 48 TALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP----S---ISGFALLTLVMEHEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 48 ~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP----~---mDGlelL~~Lr~~~~~~~iPVIilSa~~d~ 119 (527)
.+.++..|..+.. +.+..++....... .|.|+++-.-+ + ...++++.++++. .++|||+-.+-.+.
T Consensus 111 ~~~l~~~gi~vi~~v~t~~~a~~~~~~G---aD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPviaaGGI~~~ 184 (328)
T 2gjl_A 111 IAEFRRHGVKVIHKCTAVRHALKAERLG---VDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPIIASGGFADG 184 (328)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHTT---CSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEEEESSCCSH
T ss_pred HHHHHHcCCCEEeeCCCHHHHHHHHHcC---CCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEEEECCCCCH
Confidence 3445555776554 77888887766542 79888853222 1 2567888888754 37899998888888
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009734 120 STVYKCMMRGAADYLVK 136 (527)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (527)
+.+.+++.+||+...+=
T Consensus 185 ~~v~~al~~GAdgV~vG 201 (328)
T 2gjl_A 185 RGLVAALALGADAINMG 201 (328)
T ss_dssp HHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 89999999999988754
No 148
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=69.99 E-value=9.8 Score=35.20 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=34.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|..+|+|||=-.-+...+...|++.|+++..+.+.++. .. +|.||+
T Consensus 1 M~~~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~~----~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----LA----ADKLFL 46 (211)
T ss_dssp --CCEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----HH----CSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----hC----CCEEEE
Confidence 45689999976666678889999999999988886543 22 688876
No 149
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=69.62 E-value=73 Score=31.33 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=67.8
Q ss_pred EEEEEec--CHHHHHHHHHHHHhCCCEE-EEECCHHHHHHHHHcCCCCceEEEE---eCCCCCCCHHHHHHHHHhcccCC
Q 009734 33 RVLLVEA--DDSTRQIVTALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILT---EVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 33 rVLLVDD--D~~~r~~L~~lL~~~Gy~V-~~a~dg~eALe~L~~~~~~pDLVLl---Dl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
-|||+-. ++.....|..+-..+|+++ +.+.+.+|+-..+... .++|=+ |+.-...| ++...+|... ...
T Consensus 129 aILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~---a~iIGINNRnL~tf~vd-l~~t~~L~~~-ip~ 203 (258)
T 4a29_A 129 TVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---ARFIGIMSRDFETGEIN-KENQRKLISM-IPS 203 (258)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTT---CSEEEECSBCTTTCCBC-HHHHHHHHTT-SCT
T ss_pred eeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCC---CcEEEEeCCCccccccC-HHHHHHHHhh-CCC
Confidence 4555543 3444556666667889975 4599999988777643 677755 23333445 4445555433 224
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++.+|.-|+-.+.+.+.+....|++.||+-
T Consensus 204 ~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 204 NVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 677787889999999999999999999976
No 150
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=69.25 E-value=35 Score=34.93 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=65.9
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCC------------CCCH
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP------------SISG 92 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP------------~mDG 92 (527)
...+++|+ +.....+.++.+-+..+..|. .+.+.++|..+++.. .|.|.+-.. | +.-.
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG---aD~I~VG~~-~Gs~~~tr~~~g~g~p~ 192 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENG---ADGIKVGIG-PGSICTTRIVAGVGVPQ 192 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CCTTCCHHHHTCBCCCH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcC---cCEEEEecC-CCcCCCcccccCCCCCc
Confidence 45667664 334455566665555577655 478888887777643 798887311 1 1234
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++++..+.+.....++|||.--+-.+...+.+++.+||+...+=
T Consensus 193 ~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 193 ITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 55555554321113689998888878899999999999988643
No 151
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=69.14 E-value=11 Score=35.79 Aligned_cols=101 Identities=10% Similarity=0.111 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCC----C-CCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 46 IVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----P-SISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~M----P-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
..-..|+..|+.+.. +..|...+..+..-+ ||.|=+|-.+ . ......+++.|.......++.|| ..+-.+
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt 219 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVEN 219 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCC
Confidence 344567778998765 567777888888755 9999999532 1 22234455555433222355555 577788
Q ss_pred HHHHHHHHHcCCCEE----EeCCCCHHHHHHHHHH
Q 009734 119 VSTVYKCMMRGAADY----LVKPVRRNELRNLWQH 149 (527)
Q Consensus 119 ~~~~~~al~~GA~Dy----L~KP~~~eeL~~~L~~ 149 (527)
.+....+..+|++.+ +.||...+++...+..
T Consensus 220 ~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 220 AEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 888989999997644 6799999999876654
No 152
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=69.13 E-value=8.9 Score=35.58 Aligned_cols=79 Identities=13% Similarity=0.108 Sum_probs=55.4
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCC-CCeEEEEecCCCHHHHHHH
Q 009734 49 ALLRKSSYRV-TAVPDGLKAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICK-NIPVIMMSSQDSVSTVYKC 125 (527)
Q Consensus 49 ~lL~~~Gy~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~-~iPVIilSa~~d~~~~~~a 125 (527)
...+..|..+ ..+.+..++.+..+. . +|.|++ .| ...|++.++++++.. + ++|||+..+-. .+.+.++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~-G--~d~v~v---~~t~~~g~~~~~~l~~~~--~~~ipvia~GGI~-~~~i~~~ 165 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA-G--AQALKI---FPSSAFGPQYIKALKAVL--PSDIAVFAVGGVT-PENLAQW 165 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT-T--CSEEEE---TTHHHHCHHHHHHHHTTS--CTTCEEEEESSCC-TTTHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC-C--CCEEEE---ecCCCCCHHHHHHHHHhc--cCCCeEEEeCCCC-HHHHHHH
Confidence 4455567653 337888888776653 2 799886 23 123678888887642 3 58999888776 7778888
Q ss_pred HHcCCCEEEeC
Q 009734 126 MMRGAADYLVK 136 (527)
Q Consensus 126 l~~GA~DyL~K 136 (527)
+.+||+.+.+=
T Consensus 166 ~~~Ga~gv~vG 176 (212)
T 2v82_A 166 IDAGCAGAGLG 176 (212)
T ss_dssp HHHTCSEEEEC
T ss_pred HHcCCCEEEEC
Confidence 99999999743
No 153
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=68.97 E-value=13 Score=37.16 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=72.8
Q ss_pred CccccChhhhhhhccCccccchHHhhhcCcCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE------ECCHHHHHHH
Q 009734 2 GDVVLNDEELKEMNGNEGIAKWETFLQRMALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA------VPDGLKAWEV 70 (527)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~~------a~dg~eALe~ 70 (527)
|.+||+.+|++.|... -+.|... ...-+++- |-......++.+++.. ++.|+. +.+..+|++.
T Consensus 101 GdF~Ys~~E~~~M~~d-----I~~~~~~-GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~ 174 (287)
T 3iwp_A 101 GDFLYSDREIEVMKAD-----IRLAKLY-GADGLVFGALTEDGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALET 174 (287)
T ss_dssp SCSCCCHHHHHHHHHH-----HHHHHHT-TCSEEEECCBCTTSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHH
T ss_pred CCcccCHHHHHHHHHH-----HHHHHHc-CCCEEEEeeeCCCCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHH
Confidence 6788898999888721 0111111 11222222 3223344445555432 344443 3478999999
Q ss_pred HHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCCEEEe
Q 009734 71 LKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLV 135 (527)
Q Consensus 71 L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL~ 135 (527)
|.... +|-||+-=.-| ..+|+++|++|.+... ..++|++-.+- ..+.+.+.++ .|+..|-.
T Consensus 175 Li~lG--vdrILTSG~~~~a~~Gl~~Lk~Lv~~a~-~rI~ImaGGGV-~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 175 LLTLG--FERVLTSGCDSSALEGLPLIKRLIEQAK-GRIVVMPGGGI-TDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHHHT--CSEEEECTTSSSTTTTHHHHHHHHHHHT-TSSEEEECTTC-CTTTHHHHHHHHCCSEEEE
T ss_pred HHHcC--CCEEECCCCCCChHHhHHHHHHHHHHhC-CCCEEEECCCc-CHHHHHHHHHhhCCCEEeE
Confidence 98754 99999976555 4799999999976532 34555544333 3444445444 88888864
No 154
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=68.75 E-value=31 Score=34.60 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=60.0
Q ss_pred HHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC-C----CCHHHHHHHHHhcccCCCCeEEEEecCCCHHH
Q 009734 48 TALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP-S----ISGFALLTLVMEHEICKNIPVIMMSSQDSVST 121 (527)
Q Consensus 48 ~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP-~----mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~ 121 (527)
...++..|..|.. +.+.++|....+. . +|.|+++-.-. + ...++++.++++. .++|||+-.+-.+.+.
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~~-G--aD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPviaaGGI~~~~d 190 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVERA-G--ADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIAAGGIADGRG 190 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHHT-T--CSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHH
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHHc-C--CCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 3445556776655 6788888776653 3 78888853222 2 3568888888754 2789999888888999
Q ss_pred HHHHHHcCCCEEEeC
Q 009734 122 VYKCMMRGAADYLVK 136 (527)
Q Consensus 122 ~~~al~~GA~DyL~K 136 (527)
+.+++.+||+...+=
T Consensus 191 v~~al~~GA~gV~vG 205 (326)
T 3bo9_A 191 MAAAFALGAEAVQMG 205 (326)
T ss_dssp HHHHHHHTCSEEEES
T ss_pred HHHHHHhCCCEEEec
Confidence 999999999998754
No 155
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=68.71 E-value=8.7 Score=37.96 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=40.0
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
+++++++|+.. .++||++|+-+. -...+.+|.++|++..|+--+..++....+..+
T Consensus 83 ~~~v~~ir~~~--~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQH--PDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHC--TTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcC--CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 56777776542 478999997543 255788899999999999877777655444443
No 156
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=68.30 E-value=39 Score=31.87 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCce-EEEEeCCCCC-CC--HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC---
Q 009734 64 GLKAWEVLKGRPRNID-LILTEVDLPS-IS--GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK--- 136 (527)
Q Consensus 64 g~eALe~L~~~~~~pD-LVLlDl~MP~-mD--GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K--- 136 (527)
..+.++.+.... ++ +++++..-.+ .. .++++++|++. .++|||...+-.+.+.+.++++.||+.+++=
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal 227 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVF 227 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHH
Confidence 345455554433 67 4445654221 12 28899999764 3789999888888899999999999998754
Q ss_pred ---CCCHHHHHHHH
Q 009734 137 ---PVRRNELRNLW 147 (527)
Q Consensus 137 ---P~~~eeL~~~L 147 (527)
|++..++...+
T Consensus 228 ~~~~~~~~~~~~~l 241 (253)
T 1thf_D 228 HFREIDVRELKEYL 241 (253)
T ss_dssp HTTCSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 55666655444
No 157
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=67.98 E-value=77 Score=33.87 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=67.5
Q ss_pred cCcCEEEEEec----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC-----------C
Q 009734 29 RMALRVLLVEA----DDSTRQIVTALLRKSS-YRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-----------I 90 (527)
Q Consensus 29 ~~~lrVLLVDD----D~~~r~~L~~lL~~~G-y~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-----------m 90 (527)
.....+++|+. .....+.++.+-+..+ ..|+ .+.+.+.|..+++.. .|.|++.+.-.. .
T Consensus 266 eaGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~ 342 (511)
T 3usb_A 266 KASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGV 342 (511)
T ss_dssp HTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCC
T ss_pred hhccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCC
Confidence 34577888873 3444555555555543 4444 367888888777653 788887432111 2
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
-.+.++..+.+.....++|||.-.+-.+...+.+|+.+||+..++=
T Consensus 343 p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 343 PQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 2345555543322123689998888889999999999999988754
No 158
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=67.42 E-value=77 Score=31.27 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHhCCC-EE--EEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 47 VTALLRKSSY-RV--TAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 47 L~~lL~~~Gy-~V--~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
++..|+. |. .+ ..-.+..+.++.+.... +|.|++|+.-...+--.+...++.... ...++++=+...+...+.
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~G--aD~v~lDlEh~~~~~~~~~~~l~a~~~-~~~~~~VRv~~~d~~di~ 105 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGAG--FDWLLIDGEHAPNNVQTVLTQLQAIAP-YPSQPVVRPSWNDPVQIK 105 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTSC--CSEEEEESSSSSCCHHHHHHHHHHHTT-SSSEEEEECSSSCHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhCC--CCEEEEeCCCccchHHHHHHHHHHHHh-cCCCEEEEECCCCHHHHH
Confidence 5666654 43 33 22223444555555544 999999997766666666666654433 256777777777788889
Q ss_pred HHHHcCCCEEE-eCCCCHHHHHHHHHH
Q 009734 124 KCMMRGAADYL-VKPVRRNELRNLWQH 149 (527)
Q Consensus 124 ~al~~GA~DyL-~KP~~~eeL~~~L~~ 149 (527)
.++..|++..+ .|--+.++++.+++.
T Consensus 106 ~~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 106 QLLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999998764 444567887766554
No 159
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=66.75 E-value=76 Score=30.74 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=60.3
Q ss_pred cCEEEEEec-CHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDD-D~~~r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..++++.+. +...++.++.++.... .|... -...+...++.. .|++++.- |.-+++.+.. .
T Consensus 238 ~~~~i~~~g~~~~~~~~~~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~s------g~~~lEA~a~-----G 301 (375)
T 3beo_A 238 DVQVVYPVHMNPVVRETANDILGDYG-RIHLIEPLDVIDFHNVAAR----SYLMLTDS------GGVQEEAPSL-----G 301 (375)
T ss_dssp TEEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----CSEEEECC------HHHHHHHHHH-----T
T ss_pred CeEEEEeCCCCHHHHHHHHHHhhccC-CEEEeCCCCHHHHHHHHHh----CcEEEECC------CChHHHHHhc-----C
Confidence 356555433 2334555666554322 34332 334466666653 68888753 5556666632 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|||+....... .+....| .++++.| +.++|...|..++.
T Consensus 302 ~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 302 VPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 799865322222 2345678 8999877 99999999998875
No 160
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=66.35 E-value=60 Score=31.98 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=73.2
Q ss_pred CcCEEEEEecCH-HHHHHHHHHHHhCCCEEEEE-C--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADD-STRQIVTALLRKSSYRVTAV-P--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~~a-~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
...+++||-+.+ .....++.+.+..+ +++.. . +..+..+++.. .|++|+-... +.-|+-+++.+.
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma----- 352 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC----- 352 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH-----
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH-----
Confidence 457888888754 34477788888777 54443 3 56666677753 6888875544 445677787774
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
..+|||.. ... ...+.+..| .+++..|-+.++|...|..++.
T Consensus 353 ~G~Pvi~s-~~~---~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 353 LGAIPIAS-AVG---GLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp TTCEEEEE-SST---HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred CCCCeEEc-CCC---CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 25788863 332 233444456 8999999999999999999886
No 161
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=66.00 E-value=39 Score=31.80 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCCCce-EEEEeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC---
Q 009734 65 LKAWEVLKGRPRNID-LILTEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK--- 136 (527)
Q Consensus 65 ~eALe~L~~~~~~pD-LVLlDl~M----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K--- 136 (527)
.+.++.+.... ++ +++++..- .+. .++++++|++. .++|||...+-.+.+.+.++++.|++..++=
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal 228 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGY-DLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALAASVF 228 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCC-CHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHH
Confidence 44444444332 55 55565532 222 28899999865 3789999988888899999999999998753
Q ss_pred ---CCCHHHHHHHH
Q 009734 137 ---PVRRNELRNLW 147 (527)
Q Consensus 137 ---P~~~eeL~~~L 147 (527)
|++..++...+
T Consensus 229 ~~~~~~~~~~~~~l 242 (252)
T 1ka9_F 229 HFGEIPIPKLKRYL 242 (252)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 66777766544
No 162
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=65.60 E-value=14 Score=36.07 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
++++++.|++.. .++||++|+-.. -...+..+.++|++.++.-.+..+++...++.+
T Consensus 81 ~~~~v~~ir~~~--~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 81 CFEMLAIIREKH--PTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp HHHHHHHHHHHC--SSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 456677777642 368999886322 256778899999999999877776665555544
No 163
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=65.38 E-value=22 Score=38.92 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=68.2
Q ss_pred cCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHh
Q 009734 31 ALRVLLV----EADDSTRQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~ 101 (527)
..+|||. |-+..-..++..+|+..||+|+.. ...++.++.++... +|+|.+-..|.. +. --++++.|++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4688888 567777888999999999999763 36777777777655 999999887753 22 2356777776
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHc-----CCCEEEeC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMR-----GAADYLVK 136 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~-----GA~DyL~K 136 (527)
.. .++||++--.....+... .++ ||+.|-..
T Consensus 176 ~g--~~i~ViVGGa~~~~~~a~--~~i~p~~~GAD~ya~D 211 (579)
T 3bul_A 176 QG--FTIPLLIGGATTSKAHTA--VKIEQNYSGPTVYVQN 211 (579)
T ss_dssp TT--CCSCEEEESTTCCHHHHH--HHTGGGCSSCEEECCS
T ss_pred cC--CCCeEEEEccccchhhhh--hhhhhcccCCeEEECC
Confidence 44 478887655444554432 133 88776543
No 164
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=65.34 E-value=43 Score=30.93 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=57.0
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCC-----CC----CCCHHHHHHHHHhcccCCCCeEEE
Q 009734 44 RQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVD-----LP----SISGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 44 r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~-----MP----~mDGlelL~~Lr~~~~~~~iPVIi 112 (527)
.+.++.+-+.. |..+. .+.+..++.+..+. . .|+|.+-.. .+ ...++++++++++. .++|||.
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~-G--~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~---~~ipvia 180 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL-G--FDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS---VDAKVIA 180 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT-T--CSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH---CCSEEEE
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc-C--CCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh---CCCCEEE
Confidence 33444443332 56543 46778887775543 2 688765321 01 12246778888764 2689999
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeC
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..+-.+.+.+.+++.+||+.+++=
T Consensus 181 ~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 181 EGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ecCCCCHHHHHHHHHcCCCEEEEC
Confidence 888889999999999999998764
No 165
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=65.14 E-value=60 Score=32.85 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=55.6
Q ss_pred HhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCC---------C-----C--CCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 52 RKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDL---------P-----S--ISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 52 ~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~M---------P-----~--mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
+..|..|.. +.+..+|....+. . +|.|+++-.- + + ...+++++++++. .++|||+..
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~~-G--aD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~---~~iPViaaG 215 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEAA-G--ADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA---VDIPVVAAG 215 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHHT-T--CSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---CSSCEEEES
T ss_pred HHCCCeEEEECCCHHHHHHHHHc-C--CCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---cCceEEEEC
Confidence 345665543 6788887766553 3 7999985311 1 1 3448889988764 378999888
Q ss_pred cCCCHHHHHHHHHcCCCEEEe
Q 009734 115 SQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~ 135 (527)
+-.+.+.+.+++.+||+.+.+
T Consensus 216 GI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 216 GIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp SCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEE
Confidence 887899999999999988764
No 166
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=65.09 E-value=25 Score=33.25 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=46.8
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCCCCCH---HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLPSISG---FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP~mDG---lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+..+.+.... .| |.+.|....+... ++++++|++. .++|||+.....+.+.+.+++..||+..++-
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 5555555554433 44 4555765443332 4556666543 4799999999999999999999999888754
No 167
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=65.08 E-value=11 Score=37.31 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=50.0
Q ss_pred CcCEEEEEec-----CHHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 30 MALRVLLVEA-----DDSTRQIVTALLRKSS-YRVTAVPDGL-----KAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 30 ~~lrVLLVDD-----D~~~r~~L~~lL~~~G-y~V~~a~dg~-----eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.++|||||.. -+.....|..+|++.| |+|..+.+.. +.+. ..-..+|+||++..+..++--. ...
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~~-~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEET-NRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHHH-HHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHHH-HHH
Confidence 3589999986 3677789999999888 9998876531 2221 1113499999988665554322 222
Q ss_pred HHhcccCCCCeEEEEe
Q 009734 99 VMEHEICKNIPVIMMS 114 (527)
Q Consensus 99 Lr~~~~~~~iPVIilS 114 (527)
|.+- .....++|++=
T Consensus 79 l~~y-V~~Ggglv~~H 93 (281)
T 4e5v_A 79 FLEY-VQNGGGVVIYH 93 (281)
T ss_dssp HHHH-HHTTCEEEEEG
T ss_pred HHHH-HHcCCCEEEEe
Confidence 2211 11356788774
No 168
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=65.05 E-value=21 Score=34.05 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCceEEEE-eCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 64 GLKAWEVLKGRPRNIDLILT-EVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLl-Dl~----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..+.++.+.... ++.|++ ++. +.+. .++++++|++. .++|||...+-.+.+.+.+++..||+.+++=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGY-DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCC-CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCC-CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 345445554443 565554 443 2233 28889998764 3789999999999999999999999998754
No 169
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=64.78 E-value=1e+02 Score=29.82 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=63.2
Q ss_pred HHHHHHhCCC---EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 47 VTALLRKSSY---RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 47 L~~lL~~~Gy---~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
++..|+. |. .+...-...+.++.+.... +|.|++|+.-.-.+--++...++.... ...++++=+...+...+.
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~G--aD~v~lDlE~~~~~~~~~~~~~~a~~~-~~~~~~VRv~~~~~~~i~ 84 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAVAP-YASQPVIRPVEGSKPLIK 84 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTTC--CSEEEEETTTSCCCHHHHHHHHHHHTT-SSSEEEEECSSCCHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHHH
Confidence 5566654 43 2222223444455555544 999999997765666666666655433 246677666666788889
Q ss_pred HHHHcCCCEEE-eCCCCHHHHHHHHHHH
Q 009734 124 KCMMRGAADYL-VKPVRRNELRNLWQHV 150 (527)
Q Consensus 124 ~al~~GA~DyL-~KP~~~eeL~~~L~~v 150 (527)
.++..|++..+ .|--+.++++.+++.+
T Consensus 85 ~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 85 QVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 99999998754 4555678877665543
No 170
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=64.51 E-value=55 Score=31.82 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=63.9
Q ss_pred HHHHHHhCCCEE--EEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 47 VTALLRKSSYRV--TAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 47 L~~lL~~~Gy~V--~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
+++.|+.-...+ .... +..+.++.+.... +|.||+|++-.-.+.-.+...|+..... ..++++=....+...+.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~-~~~~~VRVn~~~~~di~ 82 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNA-GVSVLVRIPQVDRAHVQ 82 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHH-TCEEEEECSSCCHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHH
Confidence 556665433322 2222 3344555555444 9999999998877777777777654332 34445444445667888
Q ss_pred HHHHcCCCEEE-eCCCCHHHHHHHHHHH
Q 009734 124 KCMMRGAADYL-VKPVRRNELRNLWQHV 150 (527)
Q Consensus 124 ~al~~GA~DyL-~KP~~~eeL~~~L~~v 150 (527)
.++..|++..+ .|--+.++++.+++.+
T Consensus 83 ~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 83 RLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999998875 4555677777666554
No 171
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=64.31 E-value=49 Score=31.07 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeCCCCCCC-------HHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 48 TALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSIS-------GFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 48 ~~lL~~~Gy~V~~-a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-------GlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.+.++..|..+.. + .+..+.++.+.......|.|+++-..|+.. +++.++++++.. +++||++.-+-.
T Consensus 106 ~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~--~~~pi~v~GGI~ 183 (228)
T 1h1y_A 106 IQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY--PSLDIEVDGGLG 183 (228)
T ss_dssp HHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTSEEEEESSCS
T ss_pred HHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc--CCCCEEEECCcC
Confidence 3444555765544 3 344455555543100279999988887633 356677776643 378887765554
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 009734 118 SVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (527)
.+.+.++...||+.+++=
T Consensus 184 -~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 184 -PSTIDVAASAGANCIVAG 201 (228)
T ss_dssp -TTTHHHHHHHTCCEEEES
T ss_pred -HHHHHHHHHcCCCEEEEC
Confidence 467778888899998753
No 172
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=64.04 E-value=45 Score=31.39 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCC----CCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc-----C-CC
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVD----LPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR-----G-AA 131 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~----MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~-----G-A~ 131 (527)
+..+..+.+.... ++ +++.++. +.+. .++++++|++.- ++|||...+-.+.+.+.++++. | ++
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~---~iPvia~GGI~~~~d~~~~~~~~~~~~G~ad 218 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEH-DFSLTKKIAIEA---EVKVLAAGGISSENSLKTAQKVHTETNGLLK 218 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCC-CHHHHHHHHHHH---TCEEEEESSCCSHHHHHHHHHHHHHTTTSEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcC-CHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHhcccccCCeEe
Confidence 4556555555443 67 5555643 3344 389999998753 7899999888899999999998 9 98
Q ss_pred EEEeC------CCCHHHHHH
Q 009734 132 DYLVK------PVRRNELRN 145 (527)
Q Consensus 132 DyL~K------P~~~eeL~~ 145 (527)
..++= +++..++..
T Consensus 219 gv~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 219 GVIVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp EEEECHHHHTTSSCHHHHHH
T ss_pred EEEeeHHHHcCCCCHHHHHH
Confidence 88653 777666654
No 173
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=63.73 E-value=72 Score=32.74 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCC---------C--CCCHHHHHHHHHhcccCC
Q 009734 41 DSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL---------P--SISGFALLTLVMEHEICK 106 (527)
Q Consensus 41 ~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~M---------P--~mDGlelL~~Lr~~~~~~ 106 (527)
....+.++.+-+.. +..|. .+.+.++|..+.+. . +|.|++-..- . +.-.++.+..+++.....
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~-G--ad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISV-G--ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTT-T--CSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhc-C--CCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34454554444444 66655 36777777666543 3 7988882100 0 222456666665432223
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
++|||...+-.+...+.+++.+||+...+
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999988888899999999999988875
No 174
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=63.69 E-value=48 Score=33.14 Aligned_cols=80 Identities=21% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCC-----CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 50 LLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLP-----SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 50 lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP-----~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
.++..|+.|.. +.+.+.|....+. . +|.|+++-.-. ....+++++++++. .++|||+..+-.+.+.+.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~~-G--aD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaGGI~~~~~~~ 178 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEKI-G--ADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAGGIADGEGAA 178 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT-T--CSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEESSCCSHHHHH
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHc-C--CCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEECCCCCHHHHH
Confidence 34445776554 6777776655543 3 78888863211 23568888888764 378999988888899999
Q ss_pred HHHHcCCCEEEe
Q 009734 124 KCMMRGAADYLV 135 (527)
Q Consensus 124 ~al~~GA~DyL~ 135 (527)
+++.+||+...+
T Consensus 179 ~al~~GAdgV~v 190 (332)
T 2z6i_A 179 AGFMLGAEAVQV 190 (332)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEe
Confidence 999999988764
No 175
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=63.69 E-value=58 Score=31.56 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=54.7
Q ss_pred CEEEEE-ecCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLV-EADDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLV-DDD~~~---r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+| +|+..- .+.+++.|+..|..++. + .+....+..+.... ||+|++.. ++.+...++++++
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAK--PDAMFVFV--PAGQGGNFMKQFA 215 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHC--CSEEEEEC--CTTCHHHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcC--CCEEEEec--cchHHHHHHHHHH
Confidence 466555 444433 35566777888887653 2 36677777776644 89999854 3448899999998
Q ss_pred hcccCCC-CeEEEEecCCCHH
Q 009734 101 EHEICKN-IPVIMMSSQDSVS 120 (527)
Q Consensus 101 ~~~~~~~-iPVIilSa~~d~~ 120 (527)
+...... +|+|......+..
T Consensus 216 ~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HTTGGGTTCEEEEETTTTCHH
T ss_pred HcCCCcCCceEEecCcccCHH
Confidence 8765443 7777654333433
No 176
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=63.57 E-value=25 Score=34.68 Aligned_cols=117 Identities=17% Similarity=0.256 Sum_probs=71.9
Q ss_pred CccccChhhhhhhc---------cCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHh-CCCEEEE------ECCHH
Q 009734 2 GDVVLNDEELKEMN---------GNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTA------VPDGL 65 (527)
Q Consensus 2 ~~~~~~~~~~~~~~---------~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~------a~dg~ 65 (527)
|.++|+.+|++.|. +.+++|= = .|=.|-......++.+++. .|..|+. +.|..
T Consensus 63 GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~----------G-~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~ 131 (256)
T 1twd_A 63 GDFCYSDGEFAAILEDVRTVRELGFPGLVT----------G-VLDVDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPL 131 (256)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHTTCSEEEE----------C-CBCTTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEE----------e-eECCCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHH
Confidence 67899999999887 2333220 0 0012223334445555543 3666664 57999
Q ss_pred HHHHHHHcCCCCceEEEEeCCCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 66 KAWEVLKGRPRNIDLILTEVDLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
+|++.|.... +|=||+-=.-+ -.+|+++|++|.+.. . -+.||..+--..+.+.+.+..|+..|-
T Consensus 132 ~ale~L~~lG--~~rILTSG~~~~a~~g~~~L~~Lv~~a--~-~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 132 YTLNNLAELG--IARVLTSGQKSDALQGLSKIMELIAHR--D-APIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp HHHHHHHHHT--CCEEEECTTSSSTTTTHHHHHHHHTSS--S-CCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred HHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhh--C-CcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 9999998765 99999975444 489999999997653 2 233333333344444444477888776
No 177
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=63.08 E-value=21 Score=36.10 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=61.8
Q ss_pred cchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 21 AKWETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 21 ~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.+|..+|. ++||.||-=-..-...+...|...+++++.+. +.+.|-+..+... ..-+..| ++.
T Consensus 18 ~~~~~Mm~--~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ 82 (361)
T 3u3x_A 18 LYFQSMMD--ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIAT-----------AEE 82 (361)
T ss_dssp ----------CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESC-----------HHH
T ss_pred chhhhhcc--CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHH
Confidence 45655432 47999998654333445555566789877643 4444444444321 1112222 133
Q ss_pred HHhcccCCCCeEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 009734 99 VMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~--~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~ 151 (527)
|-.. +++-+|++... ...+.+..|+++|..=|+-||+ +.++...+++.+-
T Consensus 83 ll~~---~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 83 ILED---ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp HHTC---TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred HhcC---CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 3222 23444444433 3677889999999999999997 5677776666553
No 178
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=63.03 E-value=26 Score=34.80 Aligned_cols=107 Identities=12% Similarity=0.155 Sum_probs=59.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|++||.||---..-...+..+.+..+++++.+ . +...+-+..+... ..-+..|+ +.+-.. ++
T Consensus 1 M~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~~~-----------~~ll~~---~~ 64 (344)
T 3ezy_A 1 MSLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLG--VEKAYKDP-----------HELIED---PN 64 (344)
T ss_dssp -CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHT--CSEEESSH-----------HHHHHC---TT
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhC--CCceeCCH-----------HHHhcC---CC
Confidence 45789998876555554554445457777654 3 3344333333211 22233221 222222 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 65 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 65 VDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444433 33567788999999999999995 56777666655443
No 179
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=62.98 E-value=55 Score=28.46 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=48.8
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSY--RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+...+|.-||-++...+..+..+...++ .+. ...|..+.+..+......||+|++|...-..+.-.+++.+.
T Consensus 64 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~ 139 (187)
T 2fhp_A 64 SRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKML 139 (187)
T ss_dssp HTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHH
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHH
Confidence 33446999999999999999998887665 243 35677765554421123499999985432345566677764
No 180
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=62.72 E-value=12 Score=35.92 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcccCCCCeEEEEec
Q 009734 46 IVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...+++.|..+..+- +..+.++.+.. .+|.|++.-..||..| ++-+++|++.. ++++|.+ .+
T Consensus 103 ~~i~~i~~~G~k~gval~p~t~~e~l~~~l~---~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~--~~~~I~V-dG 176 (228)
T 3ovp_A 103 ALIKDIRENGMKVGLAIKPGTSVEYLAPWAN---QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQF--PSLDIEV-DG 176 (228)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCGGGTGGGGG---GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHC--TTCEEEE-ES
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc---cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhc--CCCCEEE-eC
Confidence 34445567787654432 33344433322 3799998777888776 44466666542 4566554 44
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 009734 116 QDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (527)
--..+.+..+.++||+-++.=
T Consensus 177 GI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 177 GVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp SCSTTTHHHHHHHTCCEEEES
T ss_pred CcCHHHHHHHHHcCCCEEEEe
Confidence 456788889999999998753
No 181
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.64 E-value=14 Score=33.19 Aligned_cols=70 Identities=17% Similarity=0.210 Sum_probs=38.9
Q ss_pred hhhcCcCEEEEEecCHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 26 FLQRMALRVLLVEADDSTRQIVTALLR--KSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~r~~L~~lL~--~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+.+...+||+||-|+.. .+..++. ..++.+..+.. ....+.+......||+||+|.- |+. +......+.
T Consensus 25 ~la~~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~-~~~-~~~~~~~l~ 96 (206)
T 4dzz_A 25 ALSRSGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA-GSL-SVITSAAVM 96 (206)
T ss_dssp HHHHTTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC-SSS-SHHHHHHHH
T ss_pred HHHHCCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC-CCC-CHHHHHHHH
Confidence 344567899999988643 3344443 33566766543 3333333322234999999962 344 444444443
No 182
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=62.41 E-value=25 Score=34.49 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=38.2
Q ss_pred hcCcCEEEEEec----CH----HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC
Q 009734 28 QRMALRVLLVEA----DD----STRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86 (527)
Q Consensus 28 ~~~~lrVLLVDD----D~----~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~ 86 (527)
+.|++||+|+-. +. .....+.+.|++.||+|+.+......+..+.... +|+||.=+.
T Consensus 10 ~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~--~D~v~~~~h 74 (317)
T 4eg0_A 10 PKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEG--FVRAFNALH 74 (317)
T ss_dssp GGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTT--CCEEEECCC
T ss_pred hhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcC--CCEEEEcCC
Confidence 456789999975 22 2466778888999999998874333233444433 899997543
No 183
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=62.38 E-value=18 Score=34.26 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCC------HHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDS------VSTVYKCMMRGAADYLVKPVRRNELRNLW 147 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d------~~~~~~al~~GA~DyL~KP~~~eeL~~~L 147 (527)
+++++++|++. .++||++++.... .+.+..++++||+..+.-.+..++....+
T Consensus 68 ~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~ 126 (248)
T 1geq_A 68 AFWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFT 126 (248)
T ss_dssp HHHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHH
T ss_pred HHHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHH
Confidence 37788888764 2679998875333 57888899999999998755555544333
No 184
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=62.21 E-value=1.2e+02 Score=30.85 Aligned_cols=104 Identities=12% Similarity=0.086 Sum_probs=66.2
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC------------CC
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------mD 91 (527)
...++.++ +.....+.++.+-+.. +..|. .+.+.++|..+++.. .|.|.+-. -|+ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aG---aD~I~v~~-g~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSG---ADIIKVGI-GPGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECS-SCSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhC---CCEEEECC-CCCcCcCccccCCCCcc
Confidence 35677776 3334455555554554 55544 478889998877653 79887742 122 12
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE-eCCC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL-VKPV 138 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL-~KP~ 138 (527)
-+.++..+.+.....++|||.-.+-.+...+.+|+.+||+... -+||
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 3444555543211136899988888899999999999998764 4555
No 185
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=62.11 E-value=36 Score=32.12 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=59.4
Q ss_pred CEEEEEecCH-HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCce-EEEEeCCCCCCC---------HHHHHH
Q 009734 32 LRVLLVEADD-STRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNID-LILTEVDLPSIS---------GFALLT 97 (527)
Q Consensus 32 lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pD-LVLlDl~MP~mD---------GlelL~ 97 (527)
...+++.+.+ .....+...+++.|..+.. +. +..+.++.+... .| +|.+ +..|+.. +++.++
T Consensus 109 ad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~ 184 (248)
T 1geq_A 109 VDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLR 184 (248)
T ss_dssp CCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHH
T ss_pred CCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHH
Confidence 3444444422 2233455566666776544 32 456666666543 24 5544 3335433 356777
Q ss_pred HHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 98 LVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+|++.. ++||++-.+-...+.+.+++.+||+.+++=
T Consensus 185 ~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 185 RAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 777642 689998888878788999999999999865
No 186
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=61.61 E-value=28 Score=37.30 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=48.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.+.. +|+|.+|...|...+ ++++++|++.. +++|||+- ...+.+.+..+.++||+...+
T Consensus 256 d~~era~aLveaG--vd~I~Id~a~g~~~~v~~~i~~i~~~~--~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKAS--VDAIVLDTAHGHSQGVIDKVKEVRAKY--PSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHC--TTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhhc--cceEEecccccchhhhhhHHHHHHHhC--CCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 3344444454444 899999998876555 46888887653 56788853 345788899999999988875
No 187
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=61.19 E-value=72 Score=31.51 Aligned_cols=107 Identities=13% Similarity=0.218 Sum_probs=61.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHH-HhCCCEEEEE-C-CHHHHHHHHHcCCCCc-eEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALL-RKSSYRVTAV-P-DGLKAWEVLKGRPRNI-DLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL-~~~Gy~V~~a-~-dg~eALe~L~~~~~~p-DLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
|++||.||---..-...+..+. +..+++++.+ . +...+-+..+... + .-+..|+ +.+-..
T Consensus 1 M~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g--~~~~~~~~~-----------~~ll~~--- 64 (344)
T 3mz0_A 1 MSLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQ--LNATVYPND-----------DSLLAD--- 64 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTT--CCCEEESSH-----------HHHHHC---
T ss_pred CeEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhC--CCCeeeCCH-----------HHHhcC---
Confidence 4578899888665555565555 3457887654 3 3333333333321 2 1223221 222222
Q ss_pred CCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 106 KNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 106 ~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+++-+|++. .....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 65 ~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 65 ENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 233344333 334677888999999999999996 46677766665543
No 188
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=60.69 E-value=20 Score=30.16 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=27.6
Q ss_pred EEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Q 009734 35 LLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK 72 (527)
Q Consensus 35 LLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~ 72 (527)
|+-|.|....+.++.-++..||+|.-+.+-++|++.++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivr 118 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVR 118 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHH
Confidence 44555666677777777777888888888888877765
No 189
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=59.79 E-value=22 Score=33.70 Aligned_cols=81 Identities=11% Similarity=0.138 Sum_probs=53.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHcCCCCceEEEEeCCCCCCCH----------
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-------DGLKAWEVLKGRPRNIDLILTEVDLPSISG---------- 92 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-------dg~eALe~L~~~~~~pDLVLlDl~MP~mDG---------- 92 (527)
|+|+|||.--.-.+...+...|...|++|+.+. +.....+.++... +|+||--......+.
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~~ 81 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIR--PHIIIHCAAYTKVDQAEKERDLAYV 81 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHC--CSEEEECCCCCCHHHHTTCHHHHHH
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcC--CCEEEECCcccChHHHhcCHHHHHH
Confidence 446999999999999999999988899988763 4444444554323 899986554433211
Q ss_pred ------HHHHHHHHhcccCCCCeEEEEecC
Q 009734 93 ------FALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 93 ------lelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
..+++.++.. .+.||++|+.
T Consensus 82 ~n~~~~~~l~~~~~~~----~~~~v~~SS~ 107 (287)
T 3sc6_A 82 INAIGARNVAVASQLV----GAKLVYISTD 107 (287)
T ss_dssp HHTHHHHHHHHHHHHH----TCEEEEEEEG
T ss_pred HHHHHHHHHHHHHHHc----CCeEEEEchh
Confidence 2355555443 3478888763
No 190
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=59.33 E-value=45 Score=33.42 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=63.1
Q ss_pred cCcCEEEEEecCHHHHHHHHHHH-HhCCCEEEEEC--CHHHHHHHHHcCCCCce-EEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 29 RMALRVLLVEADDSTRQIVTALL-RKSSYRVTAVP--DGLKAWEVLKGRPRNID-LILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL-~~~Gy~V~~a~--dg~eALe~L~~~~~~pD-LVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
++++||.||---..-...+..+. ...+++++.+. +...+-+..+... +. -+..| ++.+-...
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g--~~~~~~~~-----------~~~ll~~~- 86 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYA--IEAKDYND-----------YHDLINDK- 86 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHT--CCCEEESS-----------HHHHHHCT-
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhC--CCCeeeCC-----------HHHHhcCC-
Confidence 35689999998776666666666 34578877543 3333333333211 11 22222 12222221
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
..++-+|........+.+..|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 87 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 87 DVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 1233333333344678889999999999999997 567777666655433
No 191
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=59.26 E-value=89 Score=31.73 Aligned_cols=107 Identities=15% Similarity=0.163 Sum_probs=72.2
Q ss_pred cCEEEEEecCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADD-STRQIVTALLRKSSYRVT-AVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~-~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++||-+.+ ..+..++.+.+..+-.|. ... +..+..+++.. .|++++-... +.-|+-+++.+.. .
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~~-E~~~~~~lEAma~-----G 389 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSRF-EPCGLTQLYALRY-----G 389 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCSC-CSSCSHHHHHHHH-----T
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECccc-CCCCHHHHHHHHC-----C
Confidence 57888888764 467777777777654444 222 44444566654 5888875432 3446677787743 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRG---------AADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~G---------A~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+|||+.. . .-..+.+.-| ..+|+..|-+.++|...|..++
T Consensus 390 ~PvI~s~-~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 390 CIPVVAR-T---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp CEEEEES-S---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred CCEEEeC-C---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 7888632 2 3344556666 7899999999999999999887
No 192
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.80 E-value=21 Score=35.32 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred hhcCcCEEEEEecC---HHHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEeC
Q 009734 27 LQRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 27 ~~~~~lrVLLVDDD---~~~r~~L~~lL~~~Gy~V~~a~---dg~----eALe~L~~~~~~pDLVLlDl 85 (527)
+.....+|+++|-| +...+.++.+.+..|+.+.... ++. ++++.++.. .+|+||+|.
T Consensus 122 ~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 122 YKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp HHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 33446799999988 4455555555566677666542 333 455555433 389999997
No 193
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=58.76 E-value=57 Score=32.50 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=70.9
Q ss_pred cCEEEEEecC---HHHHHHHHHHHHhCCC--EEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 31 ALRVLLVEAD---DSTRQIVTALLRKSSY--RVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 31 ~lrVLLVDDD---~~~r~~L~~lL~~~Gy--~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
..+++||.+. ......++.+++..|. .|... -+..+..+++.. .|++|+-... +.-|+-+++.+.
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~Eama--- 347 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSFN-ESFGLVAMEAQA--- 347 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCSC-CSSCHHHHHHHH---
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECccc-cCCchHHHHHHH---
Confidence 4688888762 2345667777777664 34443 345777777764 5888774432 334677777773
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
..+|||+.. ... ..+.+..|..+++..|.+.++|..+|..++..
T Consensus 348 --~G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 348 --SGTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp --TTCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred --cCCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 267888643 332 23445567889999999999999999988753
No 194
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=58.35 E-value=29 Score=36.08 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=62.0
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
+......|++||.++...+.++ ..|+.++... .-.+.|+.+.- ...|+||+-+.-+ ..-+.++..++...
T Consensus 23 L~~~g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~agi--~~A~~viv~~~~~-~~n~~i~~~ar~~~-- 93 (413)
T 3l9w_A 23 LLSSGVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDP-QTNLQLTEMVKEHF-- 93 (413)
T ss_dssp HHHTTCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHTTT--TTCSEEEECCSSH-HHHHHHHHHHHHHC--
T ss_pred HHHCCCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhcCC--CccCEEEECCCCh-HHHHHHHHHHHHhC--
Confidence 4445688999999988765543 4677766532 22334544422 3478998855321 22345556665543
Q ss_pred CCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 106 KNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 106 ~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++++||+.+. +.........+||+..+.-
T Consensus 94 p~~~Iiara~--~~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 94 PHLQIIARAR--DVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp TTCEEEEEES--SHHHHHHHHHTTCSSCEET
T ss_pred CCCeEEEEEC--CHHHHHHHHHCCCCEEECc
Confidence 6778887664 4667777889999876643
No 195
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=58.27 E-value=1.3e+02 Score=31.93 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=68.0
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCC------------CC
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------mD 91 (527)
...+++|| ..+...+.++.+-+.. +..|.. +.+.++|..+++.. .|.|.+-+. |+ .-
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAG---ADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTT---CSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcC---CCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 4455556666666655 444443 67888887777643 798887321 11 22
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.++++..+.+.-...++|||.-.+-.+...+.+++.+||+..++=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 455666665432123699999888889999999999999887654
No 196
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.22 E-value=23 Score=37.18 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=31.4
Q ss_pred cCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeC
Q 009734 31 ALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 31 ~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl 85 (527)
..+|||||-|+ ...+.+...-...|+.+.... +. .++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 67888888885 333333333344566665543 22 3345555433 389999998
No 197
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=58.14 E-value=80 Score=32.09 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=71.9
Q ss_pred cCEEEEEecCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADD-STRQIVTALLRKSSYRVT-AVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~-~~r~~L~~lL~~~Gy~V~-~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++||-+.+ .....++.+.+..+-.|. ... ...+..+++.. .|++++--. .+.-|+-+++.+.. .
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma~-----G 390 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLKY-----G 390 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHHH-----T
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHHC-----C
Confidence 57888887654 467777777777654453 322 44444466654 588887543 23446777777743 5
Q ss_pred CeEEEEecCCCHHHHHHHHHcC---------CCEEEeCCCCHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRG---------AADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~G---------A~DyL~KP~~~eeL~~~L~~v~ 151 (527)
+|||+.. ..-..+.+..| ..+|+..|-+.++|...|..++
T Consensus 391 ~PvI~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 391 TLPLVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp CEEEEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred CCEEECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 7888642 23344556666 8899999999999999999887
No 198
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=57.95 E-value=62 Score=28.29 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=68.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 31 ALRVLLVEADDSTRQIVTALLR--KS----SYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~--~~----Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
..+++||-+.+.. ..++.+++ .. .+.+...-+..+..+++.. .|++|+=.. .+.-|+.+++.+.
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama---- 119 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA---- 119 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH----
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH----
Confidence 4678888764432 23444443 22 2344445566677777764 588887333 2334677777774
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
..+|||+.. .....+.+..|..+++. |-+.++|...|..++...
T Consensus 120 -~G~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 120 -SGKPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp -TTCCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred -cCCcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 267888642 23445556668889999 999999999999987543
No 199
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=57.79 E-value=43 Score=31.48 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=52.1
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc---CCCEEE
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR---GAADYL 134 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~M----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~---GA~DyL 134 (527)
+..+.++.+.... +| +++++..- .+. .++++++|++. .++|||...+-.+.+.+.+++++ ||+.++
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~-~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~ 220 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGP-NLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAI 220 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CC-CHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCC-CHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceee
Confidence 4556555555443 67 45566542 222 37889999764 37899999888888999999999 999987
Q ss_pred eC------CCCHHHHHHH
Q 009734 135 VK------PVRRNELRNL 146 (527)
Q Consensus 135 ~K------P~~~eeL~~~ 146 (527)
+= |++..++...
T Consensus 221 vG~al~~~~~~~~~~~~~ 238 (244)
T 1vzw_A 221 VGKALYAKAFTLEEALEA 238 (244)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 53 5665555443
No 200
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=57.59 E-value=57 Score=31.72 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHcCCCCceEEEE---------eCCC--C-------CCCH-------H
Q 009734 44 RQIVTALLRKSSYRVTA-----VPDGLKAWEVLKGRPRNIDLILT---------EVDL--P-------SISG-------F 93 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~-----a~dg~eALe~L~~~~~~pDLVLl---------Dl~M--P-------~mDG-------l 93 (527)
.+.++.+-+..++-|.. +.+..+..+.+.+.. .|.|.+ +..- | ++.| +
T Consensus 153 ~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~ 230 (311)
T 1ep3_A 153 AALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVAL 230 (311)
T ss_dssp HHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHH
Confidence 44444444444554432 235566566666554 788877 3311 1 1222 4
Q ss_pred HHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe------CCCCHHHHHHHHHHHHH
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV------KPVRRNELRNLWQHVWR 152 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~------KP~~~eeL~~~L~~v~r 152 (527)
++++++++. .++|||...+-.+.+.+.+++.+||+...+ .|....++..-+..++.
T Consensus 231 ~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~ 292 (311)
T 1ep3_A 231 KLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMD 292 (311)
T ss_dssp HHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHH
Confidence 777788654 379999888888899999999999887643 35555555555555443
No 201
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=57.40 E-value=39 Score=31.74 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=48.2
Q ss_pred cCEEEEEe------cCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVE------ADDSTRQIVTALLRKSSYRVTAV----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVD------DD~~~r~~L~~lL~~~Gy~V~~a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..+|++|+ |.......+...|+..|+++..+ .+..+..+.++. .|.|++ ||.+-+.+++.|+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 47999997 44457778889999999998887 477777777764 578775 7777777777776
Q ss_pred hc
Q 009734 101 EH 102 (527)
Q Consensus 101 ~~ 102 (527)
+.
T Consensus 99 ~~ 100 (206)
T 3l4e_A 99 RT 100 (206)
T ss_dssp HH
T ss_pred HC
Confidence 54
No 202
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=57.20 E-value=44 Score=34.48 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=47.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCC---C------EEE-EECCHHHHHHHHHcCCCCceEEEEeCCC-CC------CCH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSS---Y------RVT-AVPDGLKAWEVLKGRPRNIDLILTEVDL-PS------ISG 92 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~G---y------~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~M-P~------mDG 92 (527)
...+|.+||=|+.+.+..++.|...+ + ++. ...|+.+.++.+......||+||+|.-- |. .-.
T Consensus 210 ~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t 289 (364)
T 2qfm_A 210 KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDST 289 (364)
T ss_dssp CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhH
Confidence 34789999999999999999875321 1 233 3678888887652112349999999865 41 244
Q ss_pred HHHHHHH
Q 009734 93 FALLTLV 99 (527)
Q Consensus 93 lelL~~L 99 (527)
.++.+.+
T Consensus 290 ~eFy~~~ 296 (364)
T 2qfm_A 290 WEFLRLI 296 (364)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666665
No 203
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=57.18 E-value=35 Score=27.32 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=37.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHcCCCCceEEEEeCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSS-YRVTAVPDGLKAWEVLKGRPRNIDLILTEVD 86 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~G-y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~ 86 (527)
|+++|+|+-- -.+...+...|...| ++|+.+....+.++.+... ....+..|+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCC
Confidence 4578999988 788888888888888 8887765444555555432 2566666654
No 204
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=57.15 E-value=58 Score=28.84 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=53.6
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhc
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSY-RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEH 102 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~ 102 (527)
..+...+|.-||-++...+..+..++..+. .+.. ..|..+.+..+.. ..||+|++|.-... .+-..+++.+...
T Consensus 63 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~~fD~i~~~~p~~~~~~~~~~~l~~~~~~ 140 (189)
T 3p9n_A 63 LSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTT--SPVDLVLADPPYNVDSADVDAILAALGTN 140 (189)
T ss_dssp HHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCS--SCCSEEEECCCTTSCHHHHHHHHHHHHHS
T ss_pred HHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccC--CCccEEEECCCCCcchhhHHHHHHHHHhc
Confidence 334446899999999999999999887775 3433 5677665543323 34999999854333 2344666666552
Q ss_pred cc-CCCCeEEEEe
Q 009734 103 EI-CKNIPVIMMS 114 (527)
Q Consensus 103 ~~-~~~iPVIilS 114 (527)
.. .++-.+|+-+
T Consensus 141 ~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 141 GWTREGTVAVVER 153 (189)
T ss_dssp SSCCTTCEEEEEE
T ss_pred CccCCCeEEEEEe
Confidence 22 2344444433
No 205
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=56.92 E-value=54 Score=32.75 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=62.6
Q ss_pred hcCcCEEEEEecCHHHH-HHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 28 QRMALRVLLVEADDSTR-QIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r-~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
++.++||.||---..-+ ..+..+.+..+++++.+ .+...+-+..+... ...+ .|+ +.+-..
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~~-----------~~ll~~-- 87 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EGY-----------PALLER-- 87 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ESH-----------HHHHTC--
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CCH-----------HHHhcC--
Confidence 33458999999876665 34555555457887654 34444444443322 2222 332 233222
Q ss_pred CCCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 105 ~~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+++-+|+++ .....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 88 -~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 88 -DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp -TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 233344443 334677888999999999999998 56677766665543
No 206
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=56.42 E-value=61 Score=29.37 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=47.8
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSY-RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
+...+|.-||-++...+..+..++..|+ .+.. ..|..+.+. .....||+|++|......+-.++++.+.+
T Consensus 75 ~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 75 RYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp TTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 3335899999999999999999988776 4444 345554332 22235999999865333455567777765
No 207
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=56.42 E-value=26 Score=37.36 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=47.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mD-GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.+.. +|+|.+|...+... -+++++++++.- +++|||+ ....+.+.+..+.++||+...+
T Consensus 229 ~~~~~a~~l~~aG--~d~I~id~a~g~~~~~~~~v~~i~~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAG--VDVVVVDTAHGHSKGVIERVRWVKQTF--PDVQVIG-GNIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTT--CSEEEEECSCCSBHHHHHHHHHHHHHC--TTSEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhcc--cceEEecccCCcchhHHHHHHHHHHHC--CCceEEE-eeeCcHHHHHHHHHcCCCEEEE
Confidence 3344444444444 89999998876543 357888887653 5788886 3345678889999999988876
No 208
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=56.28 E-value=27 Score=34.39 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.8
Q ss_pred HHHHHHhCCCEEEEEC
Q 009734 47 VTALLRKSSYRVTAVP 62 (527)
Q Consensus 47 L~~lL~~~Gy~V~~a~ 62 (527)
|...|.+.|++|+.+.
T Consensus 24 La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 24 LVSELARRGHRITYVT 39 (402)
T ss_dssp HHHHHHHTTCEEEEEE
T ss_pred HHHHHHhCCCEEEEEc
Confidence 4444445555555443
No 209
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=56.16 E-value=48 Score=32.05 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=67.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+ ...+..+++..|. .|.......+..+++.. .|++|+-... +.-|+-+++.+.. .+
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~~-e~~~~~~~Ea~a~-----G~ 295 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAYQ-EAAGIVLLEAITA-----GL 295 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCSC-CSSCHHHHHHHHH-----TC
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEecccc-CCcccHHHHHHHC-----CC
Confidence 35778887754 2455666665553 35544434455555553 5788875433 3346778887743 56
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVK-PVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~K-P~~~eeL~~~L~~v~rr 153 (527)
|||+.....-. +.+..|..+++.. |.+.++|...|..++..
T Consensus 296 Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 296 PVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp CEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred CEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 89875433322 3344567889998 99999999999988753
No 210
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=56.13 E-value=60 Score=31.84 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=59.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|++||.||--=..-...+..+.+..+++++. +. +...+-+..+.. .+-..| - +.+-.. ++
T Consensus 2 m~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----~~~~~~-------~----~~~l~~---~~ 63 (331)
T 4hkt_A 2 MTVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY----GCEVRT-------I----DAIEAA---AD 63 (331)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT----TCEECC-------H----HHHHHC---TT
T ss_pred CceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh----CCCcCC-------H----HHHhcC---CC
Confidence 4689999987655555555554555788775 33 333333333332 221222 1 222222 23
Q ss_pred CeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|++. .....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 64 ~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 64 IDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 3344443 334577888999999999999995 56777766665543
No 211
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=55.29 E-value=39 Score=33.33 Aligned_cols=108 Identities=22% Similarity=0.239 Sum_probs=60.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC--CCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS--SYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~--Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
|++||.||---..-+..+..+.... +++++.+. +...|-+..+... ..-+..|+ +.|-..
T Consensus 1 M~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~--~~~~~~~~-----------~~ll~~--- 64 (334)
T 3ohs_X 1 MALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD--IPKAYGSY-----------EELAKD--- 64 (334)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT--CSCEESSH-----------HHHHHC---
T ss_pred CccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC--CCcccCCH-----------HHHhcC---
Confidence 4689999987665555444443322 35666543 4444444433321 11122221 222222
Q ss_pred CCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 106 KNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
+++=+|+++ .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 65 ~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~ 116 (334)
T 3ohs_X 65 PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSR 116 (334)
T ss_dssp TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 233344443 334678888999999999999998 677877777665443
No 212
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.26 E-value=85 Score=31.31 Aligned_cols=87 Identities=15% Similarity=0.165 Sum_probs=56.8
Q ss_pred EEECCHHHHHHHHHcCCCCceEEEEeCC-------------------------CCC----------CCHHHHHHHHHhcc
Q 009734 59 TAVPDGLKAWEVLKGRPRNIDLILTEVD-------------------------LPS----------ISGFALLTLVMEHE 103 (527)
Q Consensus 59 ~~a~dg~eALe~L~~~~~~pDLVLlDl~-------------------------MP~----------mDGlelL~~Lr~~~ 103 (527)
+.+.+..+|...+... +|+|.+... |+. .-.+++++++++.
T Consensus 130 v~v~~~~Ea~~a~~~G---ad~I~v~g~~gTG~~~~~v~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~- 205 (297)
T 4adt_A 130 CGCTNLGEALRRISEG---ASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKL- 205 (297)
T ss_dssp EEESSHHHHHHHHHHT---CSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHH-
T ss_pred EEeCCHHHHHHHHhCC---CCEEEECCCcCCCchHHHHHHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHHh-
Confidence 3478888888877653 688887743 110 1235777787664
Q ss_pred cCCCCeEEE--EecCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHH
Q 009734 104 ICKNIPVIM--MSSQDSVSTVYKCMMRGAADYLV-----KPVRRNELRNLWQHVW 151 (527)
Q Consensus 104 ~~~~iPVIi--lSa~~d~~~~~~al~~GA~DyL~-----KP~~~eeL~~~L~~v~ 151 (527)
..+|||+ ..+-.+.+.+.+++.+||+.+++ |--++......+...+
T Consensus 206 --~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 206 --KRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp --TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred --cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 2567774 45556899999999999999975 4445555444444443
No 213
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=54.71 E-value=66 Score=29.62 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=46.8
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCC--------CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCE
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLP--------SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAAD 132 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP--------~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~D 132 (527)
+.+..++.+..+. . +|.|++....| ..-|++.++++++.. +++|||+..+-. .+.+.+++..|++.
T Consensus 123 ~~t~~e~~~a~~~-g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~--~~~pvia~GGI~-~~nv~~~~~~Ga~g 196 (227)
T 2tps_A 123 AHTMSEVKQAEED-G--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQG--ISIPIVGIGGIT-IDNAAPVIQAGADG 196 (227)
T ss_dssp ECSHHHHHHHHHH-T--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTT--CCCCEEEESSCC-TTTSHHHHHTTCSE
T ss_pred cCCHHHHHHHHhC-C--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhC--CCCCEEEEcCCC-HHHHHHHHHcCCCE
Confidence 4777776655543 2 79998632222 123688888887642 248999877766 67777888899998
Q ss_pred EEe
Q 009734 133 YLV 135 (527)
Q Consensus 133 yL~ 135 (527)
+.+
T Consensus 197 v~v 199 (227)
T 2tps_A 197 VSM 199 (227)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 214
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=54.41 E-value=1.2e+02 Score=31.06 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=62.3
Q ss_pred CcCEEEEEec----CHHHHHHHHHHHHhC-CCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCCCCC------------
Q 009734 30 MALRVLLVEA----DDSTRQIVTALLRKS-SYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDLPSI------------ 90 (527)
Q Consensus 30 ~~lrVLLVDD----D~~~r~~L~~lL~~~-Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~MP~m------------ 90 (527)
....++.||- ...+.+.++.+-+.. +..|.. +.+.++|..+++.. .|.|.+.. -|+.
T Consensus 111 aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aG---aD~I~Vg~-g~G~~~~tr~~~g~g~ 186 (361)
T 3r2g_A 111 AGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCG---ADIIKAGI-GGGSVCSTRIKTGFGV 186 (361)
T ss_dssp TTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTT---CSEEEECC-SSSSCHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcC---CCEEEEcC-CCCcCccccccCCccH
Confidence 3467888872 233333444333332 565554 78999998887653 79999853 2332
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.-++.+.++... .. |||.-.+-.+...+.+++.+||+...+=
T Consensus 187 p~l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 187 PMLTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp CHHHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 223444444322 12 9998888888999999999999877643
No 215
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=53.59 E-value=47 Score=28.26 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=68.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
...+++|+.+.+. ...+..+++..+..+.. .-+..+..+++.. .|++|+-.. ...-|+-+++.+. ..+
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama-----~G~ 99 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS-----VGI 99 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH-----TTC
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh-----cCC
Confidence 3578888887554 46777888777765554 2234666666643 688887544 3344677888773 254
Q ss_pred -eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 -PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 -PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||..+.......+ ...+ .++..|-+.++|...|..++..
T Consensus 100 vPvi~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 100 VPVIANSPLSATRQF---ALDE--RSLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp CEEEECCTTCGGGGG---CSSG--GGEECTTCHHHHHHHHHHHHHC
T ss_pred CcEEeeCCCCchhhh---ccCC--ceEEcCCCHHHHHHHHHHHHhC
Confidence 99873322222211 1222 2388999999999999988753
No 216
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=52.07 E-value=22 Score=32.78 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=49.3
Q ss_pred HHHHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH-------HHHHHHHhcc--cCCCCeEEEE
Q 009734 46 IVTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGF-------ALLTLVMEHE--ICKNIPVIMM 113 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~-a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl-------elL~~Lr~~~--~~~~iPVIil 113 (527)
.+.+.++..|..+.. + .+..++++.+. ...|.|+++-..|+.+|. +-++++++.. ...++||++.
T Consensus 100 ~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~---~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~ 176 (220)
T 2fli_A 100 GALQKIKAAGMKAGVVINPGTPATALEPLL---DLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVD 176 (220)
T ss_dssp HHHHHHHHTTSEEEEEECTTSCGGGGGGGT---TTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHcCCcEEEEEcCCCCHHHHHHHH---hhCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 334444555665443 3 23344444332 237899988777766652 3355555432 1125787765
Q ss_pred ecCCCHHHHHHHHHcCCCEEEe
Q 009734 114 SSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~ 135 (527)
-+-. .+.+.+++++|++.+++
T Consensus 177 GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 177 GGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp SSCC-TTTHHHHHHHTCCEEEE
T ss_pred CcCC-HHHHHHHHHcCCCEEEE
Confidence 4444 66777788889998864
No 217
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=51.35 E-value=54 Score=30.37 Aligned_cols=69 Identities=16% Similarity=0.144 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHcCCCCce-EEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 62 PDGLKAWEVLKGRPRNID-LILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 62 ~dg~eALe~L~~~~~~pD-LVLlDl~MP~m---DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+..+.++.+.... .| |.+.|...... ..+++++.|++. .++|||+.....+.+.+.+++.+||+..++
T Consensus 33 ~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35566666666544 67 44555543221 246777888754 368999888888888899999999887764
No 218
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=51.35 E-value=70 Score=29.57 Aligned_cols=79 Identities=19% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCceEEEE-eCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC---
Q 009734 64 GLKAWEVLKGRPRNIDLILT-EVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK--- 136 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLl-Dl~MP~m---DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K--- 136 (527)
..+.++.+.... .|.|++ .+...+. -.+++++++++. .++|||+..+-...+.+.+++..||+.+++=
T Consensus 156 ~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal 230 (253)
T 1h5y_A 156 AVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLAASLF 230 (253)
T ss_dssp HHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHH
Confidence 345444444333 676654 4442211 146788888764 3789999888888888899999999998743
Q ss_pred ---CCCHHHHHHHH
Q 009734 137 ---PVRRNELRNLW 147 (527)
Q Consensus 137 ---P~~~eeL~~~L 147 (527)
+....++...+
T Consensus 231 ~~~~~~~~~~~~~l 244 (253)
T 1h5y_A 231 HFRVLSIAQVKRYL 244 (253)
T ss_dssp HTTSSCHHHHHHHH
T ss_pred HcCCCCHHHHHHHH
Confidence 55555555443
No 219
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=51.26 E-value=80 Score=30.75 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=60.0
Q ss_pred cCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLV-DDD~~~r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++++ .+.+..++.+++++.... .|... -...+..+++.. .|++++.- .|. +++.+ ...
T Consensus 238 ~~~l~i~~g~~~~~~~~l~~~~~~~~-~v~~~g~~~~~~~~~~~~~----ad~~v~~S-----g~~-~lEA~-----a~G 301 (384)
T 1vgv_A 238 DIQIVYPVHLNPNVREPVNRILGHVK-NVILIDPQEYLPFVWLMNH----AWLILTDS-----GGI-QEEAP-----SLG 301 (384)
T ss_dssp TEEEEEECCBCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHH----CSEEEESS-----STG-GGTGG-----GGT
T ss_pred CeEEEEEcCCCHHHHHHHHHHhhcCC-CEEEeCCCCHHHHHHHHHh----CcEEEECC-----cch-HHHHH-----HcC
Confidence 3566665 445556666666654322 34442 233555666654 58888754 222 33333 236
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|||+.-....... ....| .++++.| +.++|...|..++.
T Consensus 302 ~PvI~~~~~~~~~e---~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 302 KPVLVMRDTTERPE---AVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp CCEEEESSCCSCHH---HHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred CCEEEccCCCCcch---hhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 79997643233222 34567 8899988 99999999988874
No 220
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=51.11 E-value=36 Score=31.92 Aligned_cols=76 Identities=16% Similarity=0.147 Sum_probs=52.2
Q ss_pred HHHHHHHHHcCCCCceEE-EEeCCCC----CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc---CCCEEEe
Q 009734 64 GLKAWEVLKGRPRNIDLI-LTEVDLP----SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR---GAADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLV-LlDl~MP----~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~---GA~DyL~ 135 (527)
..+.++.+.... +|.| +++..-. +. .++++++|++. .++|||...+-.+.+.+.++++. ||+.+++
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGP-NLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCC-CHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCC-CHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 355555555443 6644 5665432 33 47888888754 37899999888888999999998 9998865
Q ss_pred C------CCCHHHHHH
Q 009734 136 K------PVRRNELRN 145 (527)
Q Consensus 136 K------P~~~eeL~~ 145 (527)
= |+...++..
T Consensus 225 G~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 225 GKALYARRFTLPQALA 240 (244)
T ss_dssp CHHHHTTSSCHHHHHH
T ss_pred cHHHHCCCcCHHHHHH
Confidence 3 655555443
No 221
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=50.99 E-value=97 Score=30.13 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC-CC--CCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 42 STRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV-DL--PSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl-~M--P~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.....+....+..|..+. .+.+.+++...+.... +|+|-+.. ++ ...| ++...+|... ..+++++|.-++-.
T Consensus 137 ~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g--~~iIGinnr~l~t~~~d-~~~~~~l~~~-ip~~~~vIaEsGI~ 212 (251)
T 1i4n_A 137 EQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIR--PKIIGINTRDLDTFEIK-KNVLWELLPL-VPDDTVVVAESGIK 212 (251)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCC--CSEEEEECBCTTTCCBC-TTHHHHHGGG-SCTTSEEEEESCCC
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCC--CCEEEEeCcccccCCCC-HHHHHHHHHh-CCCCCEEEEeCCCC
Confidence 334444455566899754 5899999877775402 78886643 22 2233 4555565443 22457788778888
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 009734 118 SVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (527)
+.+.+.++..+ ++.||+-
T Consensus 213 t~edv~~~~~~-a~avLVG 230 (251)
T 1i4n_A 213 DPRELKDLRGK-VNAVLVG 230 (251)
T ss_dssp CGGGHHHHTTT-CSEEEEC
T ss_pred CHHHHHHHHHh-CCEEEEc
Confidence 89999999999 9999864
No 222
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=50.53 E-value=77 Score=31.67 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=52.7
Q ss_pred HhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCC--CCCH----------HHHHHHHHhc--ccCCCCeEEEEe-c
Q 009734 52 RKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLP--SISG----------FALLTLVMEH--EICKNIPVIMMS-S 115 (527)
Q Consensus 52 ~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP--~mDG----------lelL~~Lr~~--~~~~~iPVIilS-a 115 (527)
++.|+ .+.++.+.++|.+..+.. ||+|++...+- +.-| .+.++.+.+. ...+++.|+.-. .
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGp 236 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGP 236 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTT
T ss_pred HHCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCC
Confidence 45575 577899999999888753 89999865432 3333 2344333221 223666555444 3
Q ss_pred CCCHHHHHHHHHc--CCCEEEeC
Q 009734 116 QDSVSTVYKCMMR--GAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~--GA~DyL~K 136 (527)
-...+.+..+++. |+++|+.=
T Consensus 237 IstpeDv~~~l~~t~G~~G~~gA 259 (286)
T 2p10_A 237 IANPEDARFILDSCQGCHGFYGA 259 (286)
T ss_dssp CCSHHHHHHHHHHCTTCCEEEES
T ss_pred CCCHHHHHHHHhcCCCccEEEee
Confidence 4578899999999 99999865
No 223
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=50.40 E-value=59 Score=32.64 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=64.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR----------VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~----------V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..+++||-+.+.....+.++++..|.. |.......+...++.. .|++++--..-+.-|.-+++.+.
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~----aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPV----GKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGG----EEEEEECSSSSSSCCCCCHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHh----CCEEEECCcccCCCCcCHHHHHH
Confidence 478888888776555677777777654 2222222344444432 68877632121222344666652
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHH-HHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKC-MMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~a-l~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
..+|||.-+.......+.+. ...| ++..|-+.++|...|.+++..
T Consensus 301 -----~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 301 -----WGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -----TTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred -----hCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 36799852222333333332 3444 477777999999999998864
No 224
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=50.26 E-value=67 Score=30.82 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=55.1
Q ss_pred CEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~~---~r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.||.+|. ++.. ..+.+++.|++.|..++. + .+....+..+.... ||+||+.. .+.+...+++.++
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~ 211 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAAN--PDAILVGA--SGTAAALPQTTLR 211 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHC--CSEEEEEC--CHHHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 4666664 4433 334566677888987542 2 35566677666544 89999853 3445777888888
Q ss_pred hcccCCCCeEEEEecCCCHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
+.. ..+|+|.+.+.++.....
T Consensus 212 ~~g--~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 212 ERG--YNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp HTT--CCSEEEECGGGCSHHHHH
T ss_pred HcC--CCccEEeccCcCcHHHHH
Confidence 765 367887777777765543
No 225
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=50.12 E-value=28 Score=34.37 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=66.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..+++|+.+.+. ...+..+++..|. .|.......+..+++.. .|++|+-.. .+.-|+-+++.+. ..+
T Consensus 241 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~EAma-----~G~ 309 (394)
T 2jjm_A 241 DAKLLLVGDGPE-FCTILQLVKNLHIEDRVLFLGKQDNVAELLAM----SDLMLLLSE-KESFGLVLLEAMA-----CGV 309 (394)
T ss_dssp CCEEEEECCCTT-HHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHT----CSEEEECCS-CCSCCHHHHHHHH-----TTC
T ss_pred CCEEEEECCchH-HHHHHHHHHHcCCCCeEEEeCchhhHHHHHHh----CCEEEeccc-cCCCchHHHHHHh-----cCC
Confidence 467777776543 4556666666553 23332223444455543 588887543 2334677777763 257
Q ss_pred eEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 109 PVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 109 PVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|||+.....- .+.+..|-.+++..|-+.++|...|..++..
T Consensus 310 PvI~~~~~~~----~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 310 PCIGTRVGGI----PEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CEEEECCTTS----TTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CEEEecCCCh----HHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 8886543221 2334457789999999999999999988753
No 226
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=50.07 E-value=18 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEecC------CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSSQ------DSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa~------~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
+.+++++++|+.. .++|||+|+-+ .-...+.+|.++|++++|+--+..++....+.
T Consensus 83 ~~~~~v~~~r~~~--~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~ 144 (271)
T 3nav_A 83 ICFELIAQIRARN--PETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVA 144 (271)
T ss_dssp HHHHHHHHHHHHC--TTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Confidence 4567788887642 47899999733 33567889999999999987666666444333
No 227
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=50.04 E-value=36 Score=32.38 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=46.4
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCCCCC---HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLPSIS---GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP~mD---GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+..+.+.... .| |.|.|....+.. -++++++|++. .++|||+..+..+.+.+.+++..||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4445555544332 44 444675443211 27888888754 3799999888788888999999999998764
No 228
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=49.94 E-value=25 Score=33.95 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCEEEEECCH--HH----HHHHHHcCCCCceEEEEe-CCC---CC-----------CCHHHHHHHHHhccc
Q 009734 46 IVTALLRKSSYRVTAVPDG--LK----AWEVLKGRPRNIDLILTE-VDL---PS-----------ISGFALLTLVMEHEI 104 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~a~dg--~e----ALe~L~~~~~~pDLVLlD-l~M---P~-----------mDGlelL~~Lr~~~~ 104 (527)
.|+.+|+..+++|...... .+ .++.|. .||+||++ +.- .. .+-++++++..+.
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~----~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~-- 117 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELN----RYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKN-- 117 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHH----TCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHT--
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcChhHHh----cCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHh--
Confidence 4556666679998887311 11 123443 28998886 321 00 3445566655442
Q ss_pred CCCCeEEEEecC
Q 009734 105 CKNIPVIMMSSQ 116 (527)
Q Consensus 105 ~~~iPVIilSa~ 116 (527)
...+|++.+.
T Consensus 118 --GGgll~igG~ 127 (256)
T 2gk3_A 118 --GGGLLMIGGY 127 (256)
T ss_dssp --TCEEEEECST
T ss_pred --CCEEEEECCh
Confidence 5688888764
No 229
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=49.87 E-value=38 Score=33.47 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=63.9
Q ss_pred HHhhhcCcCEEEEEecCHHHHHHHHHHHHh-CCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 24 ETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 24 e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
|++....|+||-||--=..-+..+...|+. .+++++.+. +.+.|-+..++.. ..-++.|+ +.|-
T Consensus 16 ~n~~~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-----------~ell 82 (350)
T 4had_A 16 ENLYFQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-----------EEML 82 (350)
T ss_dssp ------CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-----------HHHH
T ss_pred ccccccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-----------HHHh
Confidence 445455569999999776665555555554 477877643 4444544444322 22344442 3332
Q ss_pred hcccCCCCeEEEEecC--CCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHH
Q 009734 101 EHEICKNIPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVW 151 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~--~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~ 151 (527)
+. +++=+|+++.. ...+.+.+|+++|..=|+-||+. .++...+++.+-
T Consensus 83 ~~---~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 134 (350)
T 4had_A 83 AS---DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARD 134 (350)
T ss_dssp HC---SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHH
T ss_pred cC---CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHH
Confidence 22 23444444433 35788999999999999999985 556665555443
No 230
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=49.71 E-value=66 Score=29.96 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+. +.. +.++.+.... +|-||+--..+ .+.++.+.+ ..+|||++...
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~~----~~iPvV~i~~~ 94 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEILH----QQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHHT----TSSCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHHH----CCCCEEEEecc
Confidence 4445566778899877653 222 3455555544 89888754333 567777754 37899988654
No 231
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=49.52 E-value=26 Score=34.10 Aligned_cols=86 Identities=12% Similarity=0.173 Sum_probs=47.7
Q ss_pred HHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEEEe
Q 009734 47 VTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIMMS 114 (527)
Q Consensus 47 L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~--~~~~iPVIilS 114 (527)
..+.+++.|..+..+- +..+.++.+.. .+|+|++=-..|+..| ++-+++||+.. ...+++|. +.
T Consensus 126 ~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~---~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~-VD 201 (246)
T 3inp_A 126 SLQLIKSFGIQAGLALNPATGIDCLKYVES---NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE-ID 201 (246)
T ss_dssp HHHHHHTTTSEEEEEECTTCCSGGGTTTGG---GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE-EE
T ss_pred HHHHHHHcCCeEEEEecCCCCHHHHHHHHh---cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE-EE
Confidence 3334466676654432 23333332222 3788876555677766 34455555431 12345554 45
Q ss_pred cCCCHHHHHHHHHcCCCEEEeC
Q 009734 115 SQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~K 136 (527)
+--..+.+..+.++||+-++.=
T Consensus 202 GGI~~~ti~~~~~aGAD~~V~G 223 (246)
T 3inp_A 202 GGVNPYNIAEIAVCGVNAFVAG 223 (246)
T ss_dssp SSCCTTTHHHHHTTTCCEEEES
T ss_pred CCcCHHHHHHHHHcCCCEEEEe
Confidence 5555788889999999998763
No 232
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=49.51 E-value=66 Score=31.89 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=60.6
Q ss_pred CcCEEEEEecCHHHHH-HHHHHHHh-CCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 30 MALRVLLVEADDSTRQ-IVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~-~L~~lL~~-~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
.++||.||--=..... .+..+.+. .+++++.+ . +...+-+..+... ..-+..| ++.+-..
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-----------~~~ll~~--- 80 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-----------YEELLES--- 80 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-----------HHHHHHS---
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-----------HHHHhcC---
Confidence 4689999987633444 44444443 46777654 3 4444433333211 1123333 2222222
Q ss_pred CCCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 009734 106 KNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (527)
Q Consensus 106 ~~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~ 151 (527)
+++=+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+-
T Consensus 81 ~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 81 GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 2333444433 34578899999999999999997 6777777766553
No 233
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=49.36 E-value=1.1e+02 Score=32.46 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=66.2
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeC--------------CCCC
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEV--------------DLPS 89 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl--------------~MP~ 89 (527)
...++.|+ +.....+.++.+-+.. ++-|. .+.+.++|..+.+.. .|.|.+-. .+|.
T Consensus 267 G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~ 343 (514)
T 1jcn_A 267 GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQ 343 (514)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCH
T ss_pred CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccc
Confidence 45566652 2334455566655555 66655 377888887776653 68887732 1222
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-CCC
Q 009734 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPV 138 (527)
Q Consensus 90 mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-KP~ 138 (527)
...+.++.+++.. .++|||...+-.+...+.+++.+||+...+ .+|
T Consensus 344 ~~~~~~~~~~~~~---~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 344 GTAVYKVAEYARR---FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHHHHHHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred hhHHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 2345666666543 378999988888899999999999987753 444
No 234
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=49.11 E-value=29 Score=33.35 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.+++++++++. .++||++-.+-.+.+.+.+++.+||+.+++=
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 55688888765 2789999888888999999999999999854
No 235
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=48.95 E-value=42 Score=33.15 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=60.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+++||.||--=..-...+..+.+..+++++.+. +...+-+..+... ..-+.. |--+++. .. ..+
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~--~~~~~~-------~~~~ll~----~~-~~D 69 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA--IPVAYG-------SYEELCK----DE-TID 69 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT--CCCCBS-------SHHHHHH----CT-TCS
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC--CCceeC-------CHHHHhc----CC-CCC
Confidence 457899988765555555555555678877643 3344434333321 111111 2122222 11 123
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|.+......+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 70 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 70 IIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3333333344677888999999999999996 45677666655543
No 236
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=48.61 E-value=80 Score=29.38 Aligned_cols=85 Identities=18% Similarity=0.145 Sum_probs=56.5
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEE---EEeCCCCC-----CCHHHHHHHHHhcccCCCCeEEEE
Q 009734 44 RQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLI---LTEVDLPS-----ISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 44 r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLV---LlDl~MP~-----mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
.+.++.+-+.. +..+. .+.+..++...+... .|+| +..+ .|+ .-.++++++++.. ++|||+.
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~G---ad~i~~~v~g~-~~~~~~~~~~~~~~i~~~~~~----~ipvia~ 192 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAG---IDFVGTTLSGY-TPYSRQEAGPDVALIEALCKA----GIAVIAE 192 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTT---CSEEECTTTTS-STTSCCSSSCCHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcC---CCEEeeecccc-CCCCcCCCCCCHHHHHHHHhC----CCCEEEE
Confidence 34444443333 55554 367788887776543 6888 3322 122 1236778888653 6899998
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (527)
.+-.+.+.+.+++.+||+.+++=
T Consensus 193 GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 193 GKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp SCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCHHHHHHHHHCCCCEEEEc
Confidence 88888999999999999998753
No 237
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=48.49 E-value=1.9e+02 Score=27.67 Aligned_cols=100 Identities=10% Similarity=0.014 Sum_probs=62.3
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHH
Q 009734 47 VTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYK 124 (527)
Q Consensus 47 L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~ 124 (527)
++..|+.-.. .+...-...+.++.+.... +|.|++|+.-.-.+--++...++... ....++++=+...+...+..
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~g--aD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~~~~~~~i~~ 86 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLAG--FDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVPTNEPVIIKR 86 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTSC--CSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECCCCCHHHHHH
Confidence 5566654322 2333224445556665444 99999999776444444444444432 24567777777777888899
Q ss_pred HHHcCCCEEE-eCCCCHHHHHHHHHH
Q 009734 125 CMMRGAADYL-VKPVRRNELRNLWQH 149 (527)
Q Consensus 125 al~~GA~DyL-~KP~~~eeL~~~L~~ 149 (527)
++..|++..+ .|--+.++++.+++.
T Consensus 87 ~l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 87 LLDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HHhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999998854 555578888655544
No 238
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=48.00 E-value=50 Score=31.96 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=17.1
Q ss_pred CcCEEEEEecCH----HHHHHHHHHHHhCCCEEEEE
Q 009734 30 MALRVLLVEADD----STRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 30 ~~lrVLLVDDD~----~~r~~L~~lL~~~Gy~V~~a 61 (527)
|.||||++-... .....|...|.+.|++|..+
T Consensus 5 m~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~ 40 (364)
T 1f0k_A 5 QGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWL 40 (364)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEE
Confidence 346777775432 11124555666667776654
No 239
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=47.91 E-value=38 Score=30.54 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=40.3
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE--eCCCCCCCHH---HHHHHHHh
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISGF---ALLTLVME 101 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl--Dl~MP~mDGl---elL~~Lr~ 101 (527)
|.+|++||+++-|--.....+..++ +.+.... +|+||+ |+.-.+..-- ++++.|++
T Consensus 1 ~~~~~mri~~iSD~H~~~~~~~~~~-----------------~~~~~~~--~D~vi~~GDl~~~~~~~~~~~~~~~~l~~ 61 (228)
T 1uf3_A 1 MRRTVRYILATSNPMGDLEALEKFV-----------------KLAPDTG--ADAIALIGNLMPKAAKSRDYAAFFRILSE 61 (228)
T ss_dssp CCCCCCEEEEEECCTTCHHHHHHHH-----------------THHHHHT--CSEEEEESCSSCTTCCHHHHHHHHHHHGG
T ss_pred CccceEEEEEEeeccCCHHHHHHHH-----------------HHHhhcC--CCEEEECCCCCCCCCCHHHHHHHHHHHHh
Confidence 4567789999999765443333332 3333222 898887 5543332222 45666643
Q ss_pred cccCCCCeEEEEecCCCH
Q 009734 102 HEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~ 119 (527)
. .+|++++.+..+.
T Consensus 62 ~----~~pv~~v~GNHD~ 75 (228)
T 1uf3_A 62 A----HLPTAYVPGPQDA 75 (228)
T ss_dssp G----CSCEEEECCTTSC
T ss_pred c----CCcEEEECCCCCc
Confidence 2 4688888876653
No 240
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=47.68 E-value=1.5e+02 Score=28.84 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=57.6
Q ss_pred cCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLV-DDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+++++ .+.+..+..++.++.... .|.... ...+..+++.. .|++++.- .|+ +++.+. ..
T Consensus 230 ~~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~a-----~G 293 (376)
T 1v4v_A 230 HLTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGAA-----LG 293 (376)
T ss_dssp TSEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHHH-----TT
T ss_pred CeEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHHH-----cC
Confidence 3566665 555555666666554321 344432 23344555542 68887642 344 445542 36
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|||+.........+ ...| ..+++. .+.++|...+.+++.
T Consensus 294 ~PvI~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 294 VPVVVLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp CCEEECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred CCEEeccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 799976433333333 3445 467774 499999999988874
No 241
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=47.39 E-value=81 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=44.7
Q ss_pred CHHHHHHHHHcCCCCceEE-EEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 63 DGLKAWEVLKGRPRNIDLI-LTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLV-LlDl~MP~m---DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+..+.+.... .|.| +.|..-... ..+++++.|++. .++|||+.....+.+.+.+++..||+..++-
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg 103 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSIN 103 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4555555555433 4543 444432211 235666777653 4799999888888899999999999887754
No 242
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=47.35 E-value=8.8 Score=35.34 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=32.5
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|||||........+..+|++.|+++..+......++.+.... +|.||+
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 999997777677888999999998777654321133333212 787777
No 243
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=47.11 E-value=1.1e+02 Score=32.24 Aligned_cols=94 Identities=13% Similarity=0.036 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC---CCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 43 TRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV---DLPSISGFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl---~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
....+....+..|..+. .+.+.+|+...+... +|+|-+.. .-...| ++...+|...- ..++++|.-++-.+
T Consensus 145 ~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lg---a~iIGinnr~L~t~~~d-l~~~~~L~~~i-p~~~~vIaEsGI~t 219 (452)
T 1pii_A 145 QYRQLAAVAHSLEMGVLTEVSNEEEQERAIALG---AKVVGINNRDLRDLSID-LNRTRELAPKL-GHNVTVISESGINT 219 (452)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTT---CSEEEEESEETTTTEEC-THHHHHHHHHH-CTTSEEEEESCCCC
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCC---CCEEEEeCCCCCCCCCC-HHHHHHHHHhC-CCCCeEEEECCCCC
Confidence 33444445566899855 589999998888753 78887743 222333 55566665432 24678888889999
Q ss_pred HHHHHHHHHcCCCEEEe-----CCCCHHH
Q 009734 119 VSTVYKCMMRGAADYLV-----KPVRRNE 142 (527)
Q Consensus 119 ~~~~~~al~~GA~DyL~-----KP~~~ee 142 (527)
.+.+.++..+ ++.||+ ||-++..
T Consensus 220 ~edv~~~~~~-a~avLVGealmr~~d~~~ 247 (452)
T 1pii_A 220 YAQVRELSHF-ANGFLIGSALMAHDDLHA 247 (452)
T ss_dssp HHHHHHHTTT-CSEEEECHHHHTCSCHHH
T ss_pred HHHHHHHHHh-CCEEEEcHHHcCCcCHHH
Confidence 9999999999 999975 4555544
No 244
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=46.49 E-value=29 Score=31.79 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=44.6
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
++.++...++.. .|+|-+.-. ..-|++.+++++.. .+++||+...+-. .+.+.+++.+||+.+.+
T Consensus 113 t~~e~~~a~~~G---ad~vk~~~~--~~~g~~~~~~l~~~--~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKLG---HTILKLFPG--EVVGPQFVKAMKGP--FPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHTT---CCEEEETTH--HHHHHHHHHHHHTT--CTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHcC---CCEEEEcCc--cccCHHHHHHHHHh--CCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 566766666532 677765321 12378888888753 2478998877665 56788899999998864
No 245
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=46.48 E-value=1.1e+02 Score=29.83 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=56.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+||.||---..-...+..+.+..+++++. +. +...+-+..+... ..-+..| ++.+-. +++-
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~~--~~~~~~~-----------~~~~l~----~~~D 64 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ--NIQLFDQ-----------LEVFFK----SSFD 64 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGSS--SCEEESC-----------HHHHHT----SSCS
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CCeEeCC-----------HHHHhC----CCCC
Confidence 67888876555444455544444677654 33 3333333332211 1122222 122211 1333
Q ss_pred EEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 009734 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (527)
Q Consensus 110 VIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~ 151 (527)
+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+-
T Consensus 65 ~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 110 (325)
T 2ho3_A 65 LVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAE 110 (325)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHH
Confidence 444443 33567888999999988999998 5677666665543
No 246
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=46.15 E-value=1.1e+02 Score=29.75 Aligned_cols=85 Identities=12% Similarity=-0.003 Sum_probs=54.5
Q ss_pred CEEEEE-e-cCHHH---HHHHHHHHHhCCCEEEEE------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLV-E-ADDST---RQIVTALLRKSSYRVTAV------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLV-D-DD~~~---r~~L~~lL~~~Gy~V~~a------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.|| + ++... .+.++..|+..|+.++.. .+....+..+.... ||+||+.. .+.+...++++++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFN--PDAIYITG--YYPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTC--CSEEEECS--CHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcC--CCEEEEcc--chhHHHHHHHHHH
Confidence 578887 4 44433 345667778889876532 36667777777654 99999843 2345677888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~ 122 (527)
+... .+|+|...........
T Consensus 226 ~~g~--~~~~~~~~~~~~~~~~ 245 (366)
T 3td9_A 226 QLGF--TGYILAGDGADAPELI 245 (366)
T ss_dssp HTTC--CSEEEECGGGCSTHHH
T ss_pred HcCC--CceEEeeCCcCCHHHH
Confidence 7653 5787765555444433
No 247
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=45.73 E-value=1.4e+02 Score=28.17 Aligned_cols=69 Identities=9% Similarity=0.195 Sum_probs=48.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcC---CCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGR---PRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~---~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+|..||-++......+..++..|+ .|.. ..+..+.+..+... ...||+||+|...+ +-..+++.+..
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~ 178 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKD--NYLNYHKRLID 178 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCST--THHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchH--HHHHHHHHHHH
Confidence 46999999999999999999988886 3443 56777776655311 12499999996533 34555666543
No 248
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=45.69 E-value=90 Score=26.48 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=46.3
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
+...+|.-||-++...+..+..+...+..+.. ..+..+.+..+......+|+|+++...- .+--++++.+.
T Consensus 61 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 61 SEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp HTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred HCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 33456999999999999999988776654443 4566665554433222499999985432 33345666665
No 249
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=45.66 E-value=26 Score=34.02 Aligned_cols=98 Identities=12% Similarity=-0.025 Sum_probs=60.3
Q ss_pred CEEEEEecCHHHHHHHHHHHH---hCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeC-CC--CCCCHHHHHHHHHhccc
Q 009734 32 LRVLLVEADDSTRQIVTALLR---KSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEV-DL--PSISGFALLTLVMEHEI 104 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~---~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl-~M--P~mDGlelL~~Lr~~~~ 104 (527)
-.|+|.-..-. ..++.++. ..|..+. .+.+..++...++.. .|+|=+.- .+ .+. .++.+.+|...-.
T Consensus 130 D~VlL~~~~l~--~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~-dl~~~~~L~~~i~ 203 (254)
T 1vc4_A 130 SAALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHI-NLETAPRLGRLAR 203 (254)
T ss_dssp SEEEEEHHHHG--GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCB-CTTHHHHHHHHHH
T ss_pred CEEEECccchH--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCC-CHHHHHHHHHhCc
Confidence 35555544222 45666554 5688754 478888877666543 57775532 11 111 1344444433210
Q ss_pred --CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 105 --CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 105 --~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..++|+|..++-.+.+.+.++.. |++.+++-
T Consensus 204 ~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 204 KRGFGGVLVAESGYSRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp HTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEEC
T ss_pred cccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEe
Confidence 01679999899889999999999 99999854
No 250
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=45.64 E-value=62 Score=34.15 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=67.1
Q ss_pred hccCccccchHHhhhcC-cCEEEEEec----CHHHHHHHHHHHHh-CCCEEEEE-C-CHHHHHHHHHcCCCCce-EEEEe
Q 009734 14 MNGNEGIAKWETFLQRM-ALRVLLVEA----DDSTRQIVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNID-LILTE 84 (527)
Q Consensus 14 ~~~~~~~~~~e~~~~~~-~lrVLLVDD----D~~~r~~L~~lL~~-~Gy~V~~a-~-dg~eALe~L~~~~~~pD-LVLlD 84 (527)
|..+.....|-..++.| ++||.||-- -..-...+..+.+. .+++++.+ . +...+-+..+... -+. .+..|
T Consensus 21 ~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g-~~~~~~~~d 99 (479)
T 2nvw_A 21 MLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ-LKHATGFDS 99 (479)
T ss_dssp CCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT-CTTCEEESC
T ss_pred HHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC
Confidence 44444444444444433 489999987 44444455555554 57887654 3 3444433333322 111 23322
Q ss_pred CCCCCCCHHHHHHHHHhcccCCCCeEEEEecC--CCHHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHHHHH
Q 009734 85 VDLPSISGFALLTLVMEHEICKNIPVIMMSSQ--DSVSTVYKCMMRG------AADYLVKPVR--RNELRNLWQHVW 151 (527)
Q Consensus 85 l~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~--~d~~~~~~al~~G------A~DyL~KP~~--~eeL~~~L~~v~ 151 (527)
++.|-+. +++-+|+++.. ...+.+..|+++| ..=|+-||+. .++...+++.+-
T Consensus 100 -----------~~ell~~---~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~ 162 (479)
T 2nvw_A 100 -----------LESFAQY---KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQ 162 (479)
T ss_dssp -----------HHHHHHC---TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred -----------HHHHhcC---CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHH
Confidence 2233222 23444444433 3577888999999 7888999974 667766666543
No 251
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=45.48 E-value=1.1e+02 Score=29.10 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=26.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a 61 (527)
|+++|||.--.-.+...|...|.+.|++|..+
T Consensus 1 M~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 32 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLGQYVVESIKNDGNTPIIL 32 (311)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 45789999999999888888888889987764
No 252
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=44.95 E-value=41 Score=32.24 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHH---HHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVS---TVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~---~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
++++++++++. .++||++|.-.. .. .+..+.+.||+.++.-....+++...+..+
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~~-~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYYK-PIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCSH-HHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 56777888764 478999885222 11 122488999999998755555555554443
No 253
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=44.91 E-value=1.4e+02 Score=27.78 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||++..+. +.. +.++.+.... +|.||+--..+. .-.+.++++++ ..+|||++...
T Consensus 20 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 92 (290)
T 2fn9_A 20 LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAG--YDAIIFNPTDAD-GSIANVKRAKE----AGIPVFCVDRG 92 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCSCTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEecCChH-HHHHHHHHHHH----CCCeEEEEecC
Confidence 34455667778899877643 333 2345554443 898887432221 11345666654 36899988653
No 254
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=44.45 E-value=11 Score=35.72 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=11.9
Q ss_pred hhhcCcCEEEEEecCH
Q 009734 26 FLQRMALRVLLVEADD 41 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~ 41 (527)
.+.+...+||+||-|+
T Consensus 26 ~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 26 ALAQLGHDVTIVDADI 41 (263)
T ss_dssp HHHHTTCCEEEEECCC
T ss_pred HHHhCCCcEEEEECCC
Confidence 3444578999999876
No 255
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=44.21 E-value=2.8e+02 Score=29.39 Aligned_cols=102 Identities=15% Similarity=0.192 Sum_probs=66.6
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC------------CC
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------IS 91 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------mD 91 (527)
...+++|+ +.....+.++.+-+.. +..|. .+.+.+.|..+++.. .|.|++... |+ .-
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4455566666666665 44443 367888887777653 799987532 21 12
Q ss_pred HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 92 GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
-+.++..+.+.....++|||.-.+-.+...+.+++.+||+..++=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 345555554321112689998888888999999999999887754
No 256
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=44.15 E-value=1.4e+02 Score=30.44 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCC----C-CCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 45 QIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVD----L-PSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 45 ~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~----M-P~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
+.++.+-+..+.- +-.+.+.++|....+.. +|.|++.-. + .+...++++.++++. ....+|||+-.+-.
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~G---aD~I~vsn~GG~~~d~~~~~~~~L~~i~~a-v~~~ipVia~GGI~ 282 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMKHN---VQGIVVSNHGGRQLDEVSASIDALREVVAA-VKGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHHTT---CSEEEECCGGGTSSCSSCCHHHHHHHHHHH-HTTSSEEEEESSCC
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC---CCEEEEeCCCCCccCCCccHHHHHHHHHHH-hCCCCeEEEECCCC
Confidence 3444444444443 33467888887776643 788887321 0 123457888888654 23479999999999
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 009734 118 SVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (527)
+...+.+++.+||+...+=
T Consensus 283 ~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFLG 301 (352)
T ss_dssp SHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 9999999999999988654
No 257
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=43.93 E-value=36 Score=32.86 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=56.2
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHH---cCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 48 TALLRKSSY-RVTAVPDGLKAWEVLK---GRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 48 ~~lL~~~Gy-~V~~a~dg~eALe~L~---~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
...|.+.+. -|+...+.++++++++ ... +++|=+.++ .-++++.+++|++.- ++ .+|-....-+.+.+.
T Consensus 28 ~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gG--i~~iEvt~~--t~~a~e~I~~l~~~~--~~-~~iGaGTVlt~~~a~ 100 (232)
T 4e38_A 28 NNQLKALKVIPVIAIDNAEDIIPLGKVLAENG--LPAAEITFR--SDAAVEAIRLLRQAQ--PE-MLIGAGTILNGEQAL 100 (232)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHHHHTT--CCEEEEETT--STTHHHHHHHHHHHC--TT-CEEEEECCCSHHHHH
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCC--CCEEEEeCC--CCCHHHHHHHHHHhC--CC-CEEeECCcCCHHHHH
Confidence 344444454 3444566666665444 222 555554444 456899999997652 44 455444556799999
Q ss_pred HHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 124 KCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 124 ~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
.++.+|| +|++-|-...++....+
T Consensus 101 ~Ai~AGA-~fIvsP~~~~~vi~~~~ 124 (232)
T 4e38_A 101 AAKEAGA-TFVVSPGFNPNTVRACQ 124 (232)
T ss_dssp HHHHHTC-SEEECSSCCHHHHHHHH
T ss_pred HHHHcCC-CEEEeCCCCHHHHHHHH
Confidence 9999999 55666665555554433
No 258
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=43.80 E-value=60 Score=31.54 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=68.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeCCC------CCCCHHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL------PSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M------P~mDGlelL~~Lr~~ 102 (527)
..+++|+-+.+.. ..++.+..... +.+...-+.++..+++.. .|++|+-... ++.-|+-+++.+..
T Consensus 229 ~~~l~i~G~g~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~- 302 (394)
T 3okp_A 229 DAQLLIVGSGRYE-STLRRLATDVSQNVKFLGRLEYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQAC- 302 (394)
T ss_dssp TCEEEEECCCTTH-HHHHHHTGGGGGGEEEEESCCHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHHT-
T ss_pred CeEEEEEcCchHH-HHHHHHHhcccCeEEEcCCCCHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHHc-
Confidence 5788888765433 34444443322 233334455777777764 5888875443 14446777887742
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
.+|||+ +..... .+.+..| .+++..|-+.++|...|..++.
T Consensus 303 ----G~PvI~-~~~~~~---~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 303 ----GVPVIA-GTSGGA---PETVTPA-TGLVVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp ----TCCEEE-CSSTTG---GGGCCTT-TEEECCTTCHHHHHHHHHHHHT
T ss_pred ----CCCEEE-eCCCCh---HHHHhcC-CceEeCCCCHHHHHHHHHHHHh
Confidence 578886 333322 2344567 8999999999999999998875
No 259
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=43.45 E-value=54 Score=34.95 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPSIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~mD-GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.+.++++ .. +|+|.+|...|... -++++++|++.- +++|||+ ......+.+..+.++||+.+.+
T Consensus 233 ~~~a~~l~~-aG--~d~I~id~a~g~~~~~~~~i~~ir~~~--p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 233 EERVKALVE-AG--VDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHH-TT--CSEEEEECSCTTSHHHHHHHHHHHHHC--TTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHh-cc--CceEEeccccccchHHHHHHHHHHHHC--CCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 344444444 33 89999999887543 357888887653 5788886 3345678889999999988875
No 260
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=43.06 E-value=56 Score=32.09 Aligned_cols=102 Identities=14% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCC----CC-CCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----PS-ISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~M----P~-mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
...-..|+..|+.+.. +..|...+..|..-+ ||.|=+|-.+ .. .....+++.|-.....-++.|| ..+..
T Consensus 166 ~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~--~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~vv-AEGVE 242 (294)
T 2r6o_A 166 RTCLDALRARGVRLALDDFGTGYSSLSYLSQLP--FHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVV-AEGIE 242 (294)
T ss_dssp HHHHHHHHHHTCEEEEEEETSSCBCHHHHHHSC--CCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEE-ECCCC
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEEE-EecCC
Confidence 3444556777987554 777777777887655 9999998432 21 1234455555433222345554 57788
Q ss_pred CHHHHHHHHHcCCCE----EEeCCCCHHHHHHHHHH
Q 009734 118 SVSTVYKCMMRGAAD----YLVKPVRRNELRNLWQH 149 (527)
Q Consensus 118 d~~~~~~al~~GA~D----yL~KP~~~eeL~~~L~~ 149 (527)
+.+....+.++|++. |+.||...+++...+.+
T Consensus 243 t~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~~ 278 (294)
T 2r6o_A 243 TAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLDR 278 (294)
T ss_dssp SHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHHh
Confidence 899999999999865 37899999998876654
No 261
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=42.36 E-value=46 Score=33.40 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=59.6
Q ss_pred cCEEEEEecCHHHHH-HHHHHHHhCCCEEEEE-CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQ-IVTALLRKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~-~L~~lL~~~Gy~V~~a-~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
++||.||---..-.. .+..+.+..+++++.+ ....+..+.+...- ...-+.. |--+++. . +++
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-~~~~~~~-------~~~~ll~----~---~~v 69 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFI-SDIPVLD-------NVPAMLN----Q---VPL 69 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTS-CSCCEES-------SHHHHHH----H---SCC
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhc-CCCcccC-------CHHHHhc----C---CCC
Confidence 479999998776665 4444444457887754 32233333333221 0111221 2222222 2 233
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 109 PVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
-+|++.. ....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 70 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 70 DAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp SEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 3444433 33577888999999999999996 56677766665543
No 262
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=42.33 E-value=53 Score=32.34 Aligned_cols=60 Identities=3% Similarity=-0.057 Sum_probs=32.2
Q ss_pred CcCEEEEEecCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH
Q 009734 30 MALRVLLVEADDS---TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG 92 (527)
Q Consensus 30 ~~lrVLLVDDD~~---~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG 92 (527)
...+|++|+-|.. ..+.+..+.+..|..+....++.+....+... ..||+||+| .|+.+.
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 4568888887762 23334444444555443334443332222221 248999999 555554
No 263
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=42.00 E-value=84 Score=29.28 Aligned_cols=91 Identities=8% Similarity=-0.018 Sum_probs=62.3
Q ss_pred HhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHc
Q 009734 52 RKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMR 128 (527)
Q Consensus 52 ~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~ 128 (527)
+..|..+. .+.+..++.+.++.. .|.|-+ .|. . -|++.++.++.. .+++||+.+-+-. .+.+...+.+
T Consensus 101 ~~~g~~~i~G~~t~~e~~~A~~~G---ad~v~~---fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~-~~n~~~~l~a 171 (207)
T 2yw3_A 101 QARGVPYLPGVLTPTEVERALALG---LSALKF---FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIK-EEHLPHYAAL 171 (207)
T ss_dssp HHHTCCEEEEECSHHHHHHHHHTT---CCEEEE---TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCC-GGGHHHHHTC
T ss_pred HHhCCCEEecCCCHHHHHHHHHCC---CCEEEE---ecCccccCHHHHHHHHhh--CCCCcEEEeCCCC-HHHHHHHHhC
Confidence 33455433 488899998887643 788877 553 2 388999999764 3589999766654 6788899999
Q ss_pred CCCEEE-----eCCCCHHHHHHHHHHHHH
Q 009734 129 GAADYL-----VKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 129 GA~DyL-----~KP~~~eeL~~~L~~v~r 152 (527)
|++.+. .+ -+..++..+.+.+..
T Consensus 172 Ga~~vavgSai~~-~d~~~i~~~a~~~~~ 199 (207)
T 2yw3_A 172 PNLLAVGGSWLLQ-GNLEAVRAKVRAAKA 199 (207)
T ss_dssp SSBSCEEESGGGS-SCHHHHHHHHHHHHH
T ss_pred CCcEEEEehhhhC-CCHHHHHHHHHHHHH
Confidence 987764 33 455566666665543
No 264
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=41.93 E-value=67 Score=30.29 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=45.5
Q ss_pred CHHHHHHHHHcCCCCce-EEEEeCCCC---CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNID-LILTEVDLP---SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pD-LVLlDl~MP---~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+..+.+.+.. +| |.+.|+.-. ...-++++++|++. ..+|||+--+-.+.+.+.+++..||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 3445555554433 45 344565321 12237888888765 379999988888999999999999877764
No 265
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=41.90 E-value=2.7e+02 Score=27.61 Aligned_cols=46 Identities=20% Similarity=0.069 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 89 SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 89 ~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+....+.+..+++.- .++|||...+-.+.+.+.+++.+||+..++=
T Consensus 235 g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 235 GISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp SCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 456778888886632 5799999999999999999999999988754
No 266
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=41.64 E-value=26 Score=32.11 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=22.6
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD 63 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~d 63 (527)
|+++|+|||........+...|++.|+++..+.+
T Consensus 1 M~~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~ 34 (200)
T 1ka9_H 1 MRMKALLIDYGSGNLRSAAKALEAAGFSVAVAQD 34 (200)
T ss_dssp --CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS
T ss_pred CccEEEEEeCCCccHHHHHHHHHHCCCeEEEecC
Confidence 4579999974322334567888888988887764
No 267
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=41.15 E-value=71 Score=32.11 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=47.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCC-----CHHHHHHHHHhc
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-----SGFALLTLVMEH 102 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-----DGlelL~~Lr~~ 102 (527)
...+|.+||=++.+.+..++.+... +-++. ...|+.+.++.+.. ..||+||+|+..+.. ...++++.+++.
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~--~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~ 189 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTP--ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRG 189 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCT--TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccC--CCCCEEEECCCCccccchhhhHHHHHHHHHHh
Confidence 4569999999999999999888643 22343 35777776543322 349999999865532 124667766543
No 268
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=41.00 E-value=1.4e+02 Score=32.26 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCceEEE-EeCCC----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH-cCCCEEEeC--
Q 009734 65 LKAWEVLKGRPRNIDLIL-TEVDL----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM-RGAADYLVK-- 136 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVL-lDl~M----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~-~GA~DyL~K-- 136 (527)
.+..+.+++.. .+.|| +++.- .+.| ++++++|++. ..+|||.-.+-.+.+.+.++++ .|++..++=
T Consensus 455 ~e~a~~~~~~G--a~~il~t~~~~dG~~~G~d-~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a 528 (555)
T 1jvn_A 455 WELTRACEALG--AGEILLNCIDKDGSNSGYD-LELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM 528 (555)
T ss_dssp HHHHHHHHHTT--CCEEEECCGGGTTTCSCCC-HHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCCCCCCC-HHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence 34445555443 55555 45432 3333 7899999765 3789998777889999999998 899998654
Q ss_pred ----CCCHHHHHHHHH
Q 009734 137 ----PVRRNELRNLWQ 148 (527)
Q Consensus 137 ----P~~~eeL~~~L~ 148 (527)
|+...+++..++
T Consensus 529 ~~~~~~~~~e~~~~l~ 544 (555)
T 1jvn_A 529 FHRGEFTVNDVKEYLL 544 (555)
T ss_dssp HHTTSCCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 788888776543
No 269
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.70 E-value=71 Score=29.84 Aligned_cols=65 Identities=12% Similarity=0.213 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~dg------~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||.+..+... .+.++.+.... +|.||+--.. .+ -+.++.+.. ..+|||++...
T Consensus 31 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~~~~--~~-~~~~~~l~~----~~iPvV~~~~~ 101 (292)
T 3k4h_A 31 VIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILLYSR--EN-DRIIQYLHE----QNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEESCCB--TT-CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEeCCC--CC-hHHHHHHHH----CCCCEEEECCC
Confidence 3445666678889988775422 22445555444 8988873211 11 256666654 36899988654
No 270
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=40.53 E-value=1.6e+02 Score=29.96 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCC----CC-CCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 45 QIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD----LP-SISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~----MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
+.++.+-+..+.-|. .+.+.++|...++. . .|.|.+.-. +. +..-++++.++++. ...++|||...+-.
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~-G--ad~I~vs~~ggr~~~~~~~~~~~l~~v~~~-~~~~ipvia~GGI~ 290 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQH-G--AAGIIVSNHGARQLDYVPATIMALEEVVKA-AQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHHT-T--CSEEEECCGGGTSSTTCCCHHHHHHHHHHH-TTTSSCEEEESSCC
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHHc-C--CCEEEECCCCCccCCCcccHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence 445555555565444 35677777766654 3 788887421 11 12456778888654 22379999999999
Q ss_pred CHHHHHHHHHcCCCEEEeC
Q 009734 118 SVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL~K 136 (527)
+...+.+++.+||+...+=
T Consensus 291 ~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 9999999999999988754
No 271
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=40.28 E-value=45 Score=31.89 Aligned_cols=83 Identities=12% Similarity=0.140 Sum_probs=55.6
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhcccCCCCeEEEEecCCCH
Q 009734 50 LLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEICKNIPVIMMSSQDSV 119 (527)
Q Consensus 50 lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~~~~iPVIilSa~~d~ 119 (527)
.+++.|..+..+- +..+.++.+... ..+|+|++=-.-|+.+| ++-++++++.. ++++|. +.+--..
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~I~-VdGGI~~ 184 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLNIQ-VDGGLNI 184 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCEEE-EESSCCH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCeEE-EECCCCH
Confidence 6778888765542 445555554431 02799988777787766 45566776543 355554 4555678
Q ss_pred HHHHHHHHcCCCEEEeC
Q 009734 120 STVYKCMMRGAADYLVK 136 (527)
Q Consensus 120 ~~~~~al~~GA~DyL~K 136 (527)
+.+..+.++||+-++.=
T Consensus 185 ~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 185 ETTEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 89999999999998754
No 272
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=40.21 E-value=1.7e+02 Score=24.82 Aligned_cols=79 Identities=9% Similarity=0.016 Sum_probs=54.0
Q ss_pred HhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 25 TFLQRMALRVLLVEADDSTRQIVTALLRKSSY-RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 25 ~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
..+.+...+|..||-++...+..+..++..|. .+.. ..+..+ .+... .+|+|+++.. .+-..+++.+.+.
T Consensus 51 ~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~--~~D~i~~~~~---~~~~~~l~~~~~~ 122 (183)
T 2yxd_A 51 VEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKL--EFNKAFIGGT---KNIEKIIEILDKK 122 (183)
T ss_dssp HHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGC--CCSEEEECSC---SCHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCC--CCcEEEECCc---ccHHHHHHHHhhC
Confidence 33333667999999999999999999988775 3433 456655 23333 4999999765 5667788888765
Q ss_pred ccCCCCeEEEEe
Q 009734 103 EICKNIPVIMMS 114 (527)
Q Consensus 103 ~~~~~iPVIilS 114 (527)
++-.+++.+
T Consensus 123 ---~gG~l~~~~ 131 (183)
T 2yxd_A 123 ---KINHIVANT 131 (183)
T ss_dssp ---TCCEEEEEE
T ss_pred ---CCCEEEEEe
Confidence 444455444
No 273
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=40.18 E-value=41 Score=33.23 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=0.0
Q ss_pred cCEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECC-------------------------------------------
Q 009734 31 ALRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPD------------------------------------------- 63 (527)
Q Consensus 31 ~lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~~a~d------------------------------------------- 63 (527)
.||||++- .+..-...|...|+..|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 64 ----------------------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 64 ----------------------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
..+..+.++... ||+|++|. +...|.-+.+.+ .+|+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~-------giP~v~~ 141 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLL-------DLPVVLH 141 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHT-------TCCEEEE
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHh-------CCCEEEE
No 274
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.10 E-value=88 Score=29.52 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~-----dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+. ...+.++.+.... +|-||+--..+.. +.++.+... ++|||++...
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~~~---~~~~~l~~~----~iPvV~~~~~ 97 (294)
T 3qk7_A 29 ISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRR--VDALIVAHTQPED---FRLQYLQKQ----NFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTC--CSEEEECSCCSSC---HHHHHHHHT----TCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCC--CCEEEEeCCCCCh---HHHHHHHhC----CCCEEEECCC
Confidence 4445566778899876643 2345667666544 8888874333222 566666543 6899988653
No 275
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=40.06 E-value=93 Score=30.04 Aligned_cols=96 Identities=14% Similarity=0.064 Sum_probs=56.0
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEE-EC--CHHH-HHHHHHcCCCCceEEEEeCCCCCCCH---------HHHHHHHH
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTA-VP--DGLK-AWEVLKGRPRNIDLILTEVDLPSISG---------FALLTLVM 100 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~--dg~e-ALe~L~~~~~~pDLVLlDl~MP~mDG---------lelL~~Lr 100 (527)
|++.|-.......+...+++.|..+.. +. +..+ ...++.. . .+.|++.- +.+.-| .+++++|+
T Consensus 126 ii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~-~--~g~v~~~s-~~G~tG~~~~~~~~~~~~i~~lr 201 (268)
T 1qop_A 126 VLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASY-G--RGYTYLLS-RSGVTGAENRGALPLHHLIEKLK 201 (268)
T ss_dssp EEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHH-C--CSCEEEES-SSSCCCSSSCC--CCHHHHHHHH
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhh-C--CCcEEEEe-cCCcCCCccCCCchHHHHHHHHH
Confidence 444433333345566667777876432 22 2333 3333333 2 12344432 223222 58888888
Q ss_pred hcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+.. ++||++=.+-.+.+.+.+++..||+.+++=
T Consensus 202 ~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 202 EYH---AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred hcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 753 689887566667999999999999999865
No 276
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=39.97 E-value=16 Score=35.03 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=35.0
Q ss_pred CcCEEEEEecCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 30 MALRVLLVEADDS--------TRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 30 ~~lrVLLVDDD~~--------~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
|+++|+|+-+-.. ....+...|++.||+|..+......+..+.. ..+|+|+.-+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~--~~~d~v~~~~ 62 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKS--MGFQKVFIAL 62 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTT--TTEEEEEECC
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhc--cCCCEEEEcC
Confidence 4578999987542 3456777888899998887643222233332 2489888765
No 277
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=39.96 E-value=90 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=26.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
|.++|||.--.-.+...|...|...|++|+.+.
T Consensus 1 m~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLVTGATGLLGRAVHKEFQQNNWHAVGCG 33 (315)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHhCCCeEEEEc
Confidence 356899999988888888888888889887654
No 278
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=39.84 E-value=1.6e+02 Score=24.90 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCC
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP 137 (527)
.++++.|++. .++++++|+.........+-.+|...|+..+
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 4788888653 5799999998877776677788998888653
No 279
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=39.84 E-value=1.4e+02 Score=29.14 Aligned_cols=80 Identities=10% Similarity=-0.018 Sum_probs=52.7
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhC--CCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKS--SYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~--Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
.+|.+|-++.. ....++..|+.. |+.++.. .+....+..++... ||+||+.. .+.+...++++
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~--~d~v~~~~--~~~~~~~~~~~ 218 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAE--PEGLFNVL--FGADLPKFVRE 218 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTC--CSEEEECC--CTTHHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCC--CCEEEEcC--ccHHHHHHHHH
Confidence 57777754433 334566667766 7776531 35667777777654 99999864 34567888899
Q ss_pred HHhcccCCCCeEEEEec
Q 009734 99 VMEHEICKNIPVIMMSS 115 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa 115 (527)
+++.....+++|+-...
T Consensus 219 ~~~~g~~~~~~i~~~~~ 235 (387)
T 3i45_A 219 GRVRGLFAGRQVVSMLT 235 (387)
T ss_dssp HHHHTSSTTCEEEEEEE
T ss_pred HHHcCCCCCCeEEeecC
Confidence 98876655677775543
No 280
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=39.77 E-value=2.5e+02 Score=28.34 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=55.9
Q ss_pred ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC--CCCeEEEEecCCCHHHHHHHHHcCCCEEE-eCC
Q 009734 61 VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC--KNIPVIMMSSQDSVSTVYKCMMRGAADYL-VKP 137 (527)
Q Consensus 61 a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~--~~iPVIilSa~~d~~~~~~al~~GA~DyL-~KP 137 (527)
+.+... ++.+.... +|.|++|+.-.-.+--.+...|+..... ...++++=+...+...+..++..|++..+ .|-
T Consensus 50 i~~p~~-~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V 126 (339)
T 1izc_A 50 IPSTFV-TKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHV 126 (339)
T ss_dssp SCCHHH-HHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTC
T ss_pred CCCHHH-HHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCC
Confidence 344444 44444444 9999999977655655565656543211 12567766666677888999999998754 445
Q ss_pred CCHHHHHHHHHHH
Q 009734 138 VRRNELRNLWQHV 150 (527)
Q Consensus 138 ~~~eeL~~~L~~v 150 (527)
-+.++++.+...+
T Consensus 127 ~saee~~~~~~~~ 139 (339)
T 1izc_A 127 ETVEEVREFVKEM 139 (339)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh
Confidence 5678887665543
No 281
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=39.69 E-value=2.1e+02 Score=25.73 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
+++|-+.+..| ++.+.++.+|+.- .++. +|.+....+.+.+..+.+.||+.. +-|....++....+
T Consensus 36 ~~~iev~~~~~--~~~~~i~~ir~~~-~~~~-~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~ 101 (205)
T 1wa3_A 36 VHLIEITFTVP--DADTVIKELSFLK-EKGA-IIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEISQFCK 101 (205)
T ss_dssp CCEEEEETTST--THHHHHHHTHHHH-HTTC-EEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHHHHHHH
T ss_pred CCEEEEeCCCh--hHHHHHHHHHHHC-CCCc-EEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHHHHHHH
Confidence 56665555544 5677788887652 1133 333434456788899999999766 66766665554443
No 282
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=39.66 E-value=34 Score=31.15 Aligned_cols=51 Identities=22% Similarity=0.192 Sum_probs=34.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHcCCCCceEEEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDG---LKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg---~eALe~L~~~~~~pDLVLl 83 (527)
++|||||.-..+...+.+.|++.|+++..+... ++..+.+... ..+++||+
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~ 54 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLS 54 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEEC
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEEC
Confidence 479999976667788899999999987776543 4443444321 12456665
No 283
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=39.55 E-value=1.7e+02 Score=28.09 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=56.0
Q ss_pred EEEEEecCHHHHH-HHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 33 RVLLVEADDSTRQ-IVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 33 rVLLVDDD~~~r~-~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
.+++.+++..... ....+.+..|.+++.. .|....+..++... +|+|++- ....++..+++++++..
T Consensus 146 ~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~--~d~v~~~--~~~~~~~~~~~~~~~~g- 220 (353)
T 4gnr_A 146 VVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKMKGKD--FDAIVVP--GYYNEAGKIVNQARGMG- 220 (353)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHHHTSC--CSEEECC--SCHHHHHHHHHHHHHTT-
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEe--cCcHHHHHHHHHHHHcC-
Confidence 3455555444444 4444555678776542 36777888887655 9999963 34456778888888765
Q ss_pred CCCCeEEEEecCCCHHHHHHHH
Q 009734 105 CKNIPVIMMSSQDSVSTVYKCM 126 (527)
Q Consensus 105 ~~~iPVIilSa~~d~~~~~~al 126 (527)
...|++...+.........+.
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~ 241 (353)
T 4gnr_A 221 -IDKPIVGGDGFNGEEFVQQAT 241 (353)
T ss_dssp -CCSCEEECGGGCSHHHHHHHC
T ss_pred -CCCcEEEecccccchhhhhhh
Confidence 356777766666666655543
No 284
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=39.53 E-value=17 Score=36.10 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=59.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVI 111 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVI 111 (527)
|+|.||-......+.+..+|+..|++|.......+.+ . .+|+||+= |.||. +|+..+.... . +||+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~---~----~~DlvIvl----GGDGT-~L~aa~~~~~-~-~Pil 95 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL---E----NFDFIVSV----GGDGT-ILRILQKLKR-C-PPIF 95 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG---G----GSSEEEEE----ECHHH-HHHHHTTCSS-C-CCEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc---C----CCCEEEEE----CCCHH-HHHHHHHhCC-C-CcEE
Confidence 5788885422227788889999999988765433222 1 27888762 66773 4454443321 2 8999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
-+.. |-.+||. ++..+++..+|..++.
T Consensus 96 GIN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 96 GINT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred EECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 8763 5566776 4667777777777765
No 285
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=39.44 E-value=18 Score=33.87 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=13.8
Q ss_pred hHHhhhcCcCEEEEEecCH
Q 009734 23 WETFLQRMALRVLLVEADD 41 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~ 41 (527)
.-..+.+...+||+||-|+
T Consensus 23 LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 23 IATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp HHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHhCCCcEEEEECCC
Confidence 3344555678999999886
No 286
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=39.43 E-value=68 Score=29.25 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=42.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcC--CCCceEEEEeCCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGR--PRNIDLILTEVDLPS 89 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~--~~~pDLVLlDl~MP~ 89 (527)
..+|.-||-++...+..++.++..|.. |.. ..+..+.+..+... ...||+|++|.....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~ 146 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDR 146 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCccc
Confidence 469999999999999999999887762 443 56777665544320 024999999975443
No 287
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=39.42 E-value=58 Score=32.33 Aligned_cols=76 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred hcCcCEEEEEecC----HHHHHHHHHHHHhCCCEEEEECCHH--------------------------------------
Q 009734 28 QRMALRVLLVEAD----DSTRQIVTALLRKSSYRVTAVPDGL-------------------------------------- 65 (527)
Q Consensus 28 ~~~~lrVLLVDDD----~~~r~~L~~lL~~~Gy~V~~a~dg~-------------------------------------- 65 (527)
...+||||++-.- ..-...|...|++.|++|..+..+.
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPR 91 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCS
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCccccccc
Q ss_pred ----------------------HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 66 ----------------------KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 66 ----------------------eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
+..+.++... ||+|+.|. ...-|.-+.+.+ .+|+|.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~-------giP~v~~~ 151 (398)
T 4fzr_A 92 EEKPLLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATL-------GIPWIEQS 151 (398)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHH-------TCCEEEEC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhh-------CCCEEEec
No 288
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=39.37 E-value=13 Score=34.39 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=13.0
Q ss_pred HhhhcCcCEEEEEecCHH
Q 009734 25 TFLQRMALRVLLVEADDS 42 (527)
Q Consensus 25 ~~~~~~~lrVLLVDDD~~ 42 (527)
..+.+...+||+||-|+.
T Consensus 25 ~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 25 VALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp HHHHHTTCCEEEEECCTT
T ss_pred HHHHhcCCeEEEEeCCCC
Confidence 334455789999998863
No 289
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=39.33 E-value=1.1e+02 Score=29.91 Aligned_cols=85 Identities=8% Similarity=0.018 Sum_probs=53.4
Q ss_pred CEEEEEecCHHH----HHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADDST----RQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~~~----r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-++... .+.+++.|++.|..++.. .+....+..++... ||+||+.. .+.+...++++++
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~--~dav~~~~--~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAG--VEYVVHQN--VAGPVANILKDAK 219 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 567666554333 235666777788876531 35667777776654 89999743 3445677888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~ 122 (527)
+.. ..+|++......+....
T Consensus 220 ~~g--~~~~~~~~~~~~~~~~~ 239 (392)
T 3lkb_A 220 RLG--LKMRHLGAHYTGGPDLI 239 (392)
T ss_dssp HTT--CCCEEEECGGGCSHHHH
T ss_pred HcC--CCceEEEecCcccHHHH
Confidence 765 35677765544454443
No 290
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=39.23 E-value=85 Score=32.22 Aligned_cols=66 Identities=12% Similarity=-0.012 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.++.+.+.. +|+|.+|........ ++++++|++.- +++|||+ -...+.+.+..+.++||+...+
T Consensus 102 ~e~~~~a~~aG--vdvI~id~a~G~~~~~~e~I~~ir~~~--~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDAG--ADFFCVDVAHAHAKYVGKTLKSLRQLL--GSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHTT--CCEEEEECSCCSSHHHHHHHHHHHHHH--TTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcHhHHHHHHHHHHhc--CCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 34445554444 899999976543222 57888887652 5778886 1234678889999999988876
No 291
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=39.02 E-value=1.4e+02 Score=30.47 Aligned_cols=95 Identities=11% Similarity=0.130 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCE--EEE--ECCHHHHHHHHHcCCCCc----eEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYR--VTA--VPDGLKAWEVLKGRPRNI----DLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~--V~~--a~dg~eALe~L~~~~~~p----DLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...++.+++..|.. |.. .-+..+..+++.. . |++|+=... +.-|+-+++.+. ..+|||...
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~~-Eg~~~~~lEAma-----~G~PvI~s~- 389 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSFY-EPFGLAPVEAMA-----SGLPAVVTR- 389 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCSC-BCCCSHHHHHHH-----TTCCEEEES-
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECccc-CCCCcHHHHHHH-----cCCCEEEec-
Confidence 67788888877652 444 3345777777764 5 888874332 334667777774 267888643
Q ss_pred CCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 116 QDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
. ....+.+..|..+++..|-+.++|...|..++.
T Consensus 390 ~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 390 N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 2 233455667778999999999999999998874
No 292
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=38.92 E-value=1.8e+02 Score=29.67 Aligned_cols=86 Identities=8% Similarity=0.028 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCEEEE--E---CCHHHHHHHHHcCCCCceEEEEeCCCC---------------------CCCHHHHHHH
Q 009734 45 QIVTALLRKSSYRVTA--V---PDGLKAWEVLKGRPRNIDLILTEVDLP---------------------SISGFALLTL 98 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a---~dg~eALe~L~~~~~~pDLVLlDl~MP---------------------~mDGlelL~~ 98 (527)
+.|+.+-+..+.-|.. + .+.+.|..+.+.. +|.|.++-. . +....+.+..
T Consensus 196 ~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~aG---ad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~ 271 (365)
T 3sr7_A 196 KHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDLG---VKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVLLN 271 (365)
T ss_dssp HHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHHT---CCEEECCCB-C--------------CGGGTTCSCBHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHcC---CCEEEEeCC-CCcccchhhccccccccccccccccHHHHHHH
Confidence 4455555555543333 3 4667776666543 688776422 1 2223455665
Q ss_pred HHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 99 VMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 99 Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++. ....+|||.-.+-.+...+.+++.+||+...+=
T Consensus 272 v~~--~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 272 AQP--LMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HGG--GTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHH--hcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 543 235799998888889999999999999988653
No 293
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=38.81 E-value=29 Score=32.53 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.9
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHHhcc--cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 78 IDLILTEVDLPSISG-------FALLTLVMEHE--ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 78 pDLVLlDl~MP~mDG-------lelL~~Lr~~~--~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.|.|+++-..|+..| ++.+++|++.. ...++||++.-+-. .+.+.+++++||+.+.+=
T Consensus 141 ~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 141 VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAG 207 (230)
T ss_dssp CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEES
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 789988887775544 45556665432 01257877655544 667777888999988653
No 294
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=38.71 E-value=74 Score=31.90 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.8
Q ss_pred cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 115 SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
.....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 93 ~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 93 TQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp SSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999998 56677776665543
No 295
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=38.54 E-value=1.3e+02 Score=30.09 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=59.8
Q ss_pred CEE-EEECCHHHHHHHHHcCCCCceEEEEeCC--CCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCH------------
Q 009734 56 YRV-TAVPDGLKAWEVLKGRPRNIDLILTEVD--LPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSV------------ 119 (527)
Q Consensus 56 y~V-~~a~dg~eALe~L~~~~~~pDLVLlDl~--MP~m-DGlelL~~Lr~~~~~~~iPVIilSa~~d~------------ 119 (527)
+.+ +++.+.+.|+...+... |-|=++-. .++. -++.+++.+++. .++||.+|.-.-.-
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGA---dRIELc~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Ys~~E~~~M 113 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGA---DRIELCSGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLYSDREIEVM 113 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTC---SEEEECBCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCCCHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHhCC---CEEEECCCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCcccCHHHHHHH
Confidence 443 34788888988887654 43333333 3443 478899999764 36999888654432
Q ss_pred -HHHHHHHHcCCCEEEeCC------CCHHHHHHHHHHH
Q 009734 120 -STVYKCMMRGAADYLVKP------VRRNELRNLWQHV 150 (527)
Q Consensus 120 -~~~~~al~~GA~DyL~KP------~~~eeL~~~L~~v 150 (527)
+.+..+.++||+++..=- ++.+.++.++...
T Consensus 114 ~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a 151 (287)
T 3iwp_A 114 KADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAIC 151 (287)
T ss_dssp HHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc
Confidence 577788999999998763 5666777666653
No 296
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=38.39 E-value=86 Score=31.07 Aligned_cols=106 Identities=9% Similarity=0.178 Sum_probs=58.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+++||.||---..-...+..+.+..+++++.+ . +...+-+..+. +.+ +..+. ++.+-.. ++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~----~g~-------~~~~~---~~~~l~~---~~ 66 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR----YNC-------AGDAT---MEALLAR---ED 66 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH----HTC-------CCCSS---HHHHHHC---SS
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH----cCC-------CCcCC---HHHHhcC---CC
Confidence 35799999876655444444433347887654 3 33333333332 111 11111 1222212 23
Q ss_pred CeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|+++ .....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 67 ~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 67 VEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp CCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 3344433 334577888999999999999996 46677766665543
No 297
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=38.22 E-value=54 Score=31.10 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=53.1
Q ss_pred HHHHHHHhCCCEEEE-E--CCHHHHHHHHHcCCCCceEEEEeCCCCCCC-------HHHHHHHHHhccc--CCCCeEEEE
Q 009734 46 IVTALLRKSSYRVTA-V--PDGLKAWEVLKGRPRNIDLILTEVDLPSIS-------GFALLTLVMEHEI--CKNIPVIMM 113 (527)
Q Consensus 46 ~L~~lL~~~Gy~V~~-a--~dg~eALe~L~~~~~~pDLVLlDl~MP~mD-------GlelL~~Lr~~~~--~~~iPVIil 113 (527)
.+.+.++..|..+.. + .+..++++.+.. ..|.|++=-..|+.. +++.++++++... ..++||.+.
T Consensus 103 ~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~---~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~ 179 (230)
T 1tqj_A 103 RTLCQIRELGKKAGAVLNPSTPLDFLEYVLP---VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVD 179 (230)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCCcHHHHHHHHh---cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344445566776544 3 355555554443 268887766777633 3667777765421 126788876
Q ss_pred ecCCCHHHHHHHHHcCCCEEEeC
Q 009734 114 SSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 114 Sa~~d~~~~~~al~~GA~DyL~K 136 (527)
-+-. .+.+.++.++||+.+++=
T Consensus 180 GGI~-~~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 180 GGLK-PNNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SSCC-TTTTHHHHHHTCCEEEES
T ss_pred CCcC-HHHHHHHHHcCCCEEEEC
Confidence 6654 377778889999999754
No 298
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=38.09 E-value=1.6e+02 Score=26.54 Aligned_cols=112 Identities=22% Similarity=0.353 Sum_probs=63.6
Q ss_pred cCEEEEEe------cCHHHHHHHHHHHHhCCCEEEE--EC------CHHH-----------HHHHHHcCCCCceEEEEeC
Q 009734 31 ALRVLLVE------ADDSTRQIVTALLRKSSYRVTA--VP------DGLK-----------AWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 31 ~lrVLLVD------DD~~~r~~L~~lL~~~Gy~V~~--a~------dg~e-----------ALe~L~~~~~~pDLVLlDl 85 (527)
+++|.|.. .+......+...|++.| .|.. +. .+++ -++.++. .|+||..+
T Consensus 2 ~mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~----aD~vvA~l 76 (152)
T 4fyk_A 2 RRSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ----ADVVVAEV 76 (152)
T ss_dssp -CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH----CCEEEEeC
Confidence 45666653 34355577888888888 5532 11 1111 2344443 69999988
Q ss_pred CCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCC---CEEEeCCCCHHHHHHHHHHHHHh
Q 009734 86 DLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGA---ADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 86 ~MP~m-DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA---~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
.-|+. -++|+--... .+.||+++..... .....+|-.|. ..|.++.+...+|...|...+..
T Consensus 77 ~~~d~Gt~~EiG~A~a-----lgkPV~~l~~~~~-~~~ls~mi~G~~~~~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 77 TQPSLGVGYELGRAVA-----LGKPILCLFRPQS-GRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp SSCCHHHHHHHHHHHH-----TTCCEEEEECGGG-SCCCCHHHHHHCCSSSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHH-----cCCeEEEEEeCCc-cchhHHHHcCCCCCCeEEEEEecHHHHHHHHHHHHHh
Confidence 85532 2455554442 3569998775331 11123333444 45888888888888888877643
No 299
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=38.09 E-value=26 Score=33.11 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
|+++|||.-- -.+...|...|.+.|++|+.+.
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~ 35 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTS 35 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEE
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999997 8888899888888899988754
No 300
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=38.07 E-value=67 Score=31.89 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=15.7
Q ss_pred cCEEEEEecC----HHHHHHHHHHHHhCCCEEEEE
Q 009734 31 ALRVLLVEAD----DSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 31 ~lrVLLVDDD----~~~r~~L~~lL~~~Gy~V~~a 61 (527)
+||||++-.. -.-...|...|+..|++|..+
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~ 54 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIA 54 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEE
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEe
Confidence 3566666532 111223555566667766654
No 301
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=38.07 E-value=2e+02 Score=27.28 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCC--HHH----HHHHHHcCCCEEEe-----CC
Q 009734 69 EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDS--VST----VYKCMMRGAADYLV-----KP 137 (527)
Q Consensus 69 e~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d--~~~----~~~al~~GA~DyL~-----KP 137 (527)
+.+.+.. .|+|.+.. | -|++.++++... .++|||+..+-.. .+. +..++..||+.+.+ +.
T Consensus 173 ~~a~~~G--ad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 173 RLGAELG--ADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQH 243 (273)
T ss_dssp HHHHHTT--CSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTS
T ss_pred HHHHHcC--CCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCC
Confidence 4444443 79998874 2 468888888764 2689999887663 444 66677899998864 22
Q ss_pred CCHHHHHHHHHHHHH
Q 009734 138 VRRNELRNLWQHVWR 152 (527)
Q Consensus 138 ~~~eeL~~~L~~v~r 152 (527)
-++.+....+..++.
T Consensus 244 ~~~~~~~~~l~~~~~ 258 (273)
T 2qjg_A 244 DDVVGITRAVCKIVH 258 (273)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 344444444444443
No 302
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=37.95 E-value=86 Score=30.10 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=38.7
Q ss_pred cCEEEEEecC--------------------HHHHHHHHHHHHhCCCEEEEECCHH-----------------HHHHHHHc
Q 009734 31 ALRVLLVEAD--------------------DSTRQIVTALLRKSSYRVTAVPDGL-----------------KAWEVLKG 73 (527)
Q Consensus 31 ~lrVLLVDDD--------------------~~~r~~L~~lL~~~Gy~V~~a~dg~-----------------eALe~L~~ 73 (527)
+||||+|-.. ......+...|.+.|++|..+.... ...+.++.
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3799999877 2345556777788899988764321 45566665
Q ss_pred CCCCceEEEEeCCCCC
Q 009734 74 RPRNIDLILTEVDLPS 89 (527)
Q Consensus 74 ~~~~pDLVLlDl~MP~ 89 (527)
.. ||+|++-...+.
T Consensus 83 ~~--~Dvi~~~~~~~~ 96 (342)
T 2iuy_A 83 AD--VDVVHDHSGGVI 96 (342)
T ss_dssp CC--CSEEEECSSSSS
T ss_pred cC--CCEEEECCchhh
Confidence 44 999998765543
No 303
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=37.93 E-value=57 Score=32.67 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcccCCCCeEEEE--ecCCCHHHHHHHHHcCCCEEEeC-----CCCHHHHHHHHHHHHHh
Q 009734 92 GFALLTLVMEHEICKNIPVIMM--SSQDSVSTVYKCMMRGAADYLVK-----PVRRNELRNLWQHVWRR 153 (527)
Q Consensus 92 GlelL~~Lr~~~~~~~iPVIil--Sa~~d~~~~~~al~~GA~DyL~K-----P~~~eeL~~~L~~v~rr 153 (527)
.++++++|++. ..+|||++ .+-.+.+.+.+++++|+++.++= --++......+..++..
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 37888998775 47899987 34447899999999999999754 44566666666665543
No 304
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=37.91 E-value=81 Score=31.55 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=59.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||.||--=..-...+..+.+..+++++.+ ..-.+..+..+. +.+-.. .|--+++. . +++-
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~~------~~~~~ll~----~---~~~D 67 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ----KGLKIY------ESYEAVLA----D---EKVD 67 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT----TTCCBC------SCHHHHHH----C---TTCC
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh----cCCcee------CCHHHHhc----C---CCCC
Confidence 4799999876655555554444447887764 322233343332 222111 12122222 2 2333
Q ss_pred EEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 110 VIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+|++. .....+.+..|+++|..=|+-||+ +.++...++..+-+
T Consensus 68 ~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 68 AVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 44443 334577889999999999999997 46677766665543
No 305
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=37.86 E-value=3e+02 Score=28.75 Aligned_cols=102 Identities=13% Similarity=0.169 Sum_probs=62.8
Q ss_pred cCEEEEEec----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCC-----------CCCH
Q 009734 31 ALRVLLVEA----DDSTRQIVTALLRKS-SYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLP-----------SISG 92 (527)
Q Consensus 31 ~lrVLLVDD----D~~~r~~L~~lL~~~-Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP-----------~mDG 92 (527)
...+++++- .....+.++.+-+.. ++-|. .+.+.++|..+.+. . +|.|.+...-. +.-.
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~-G--~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA-G--ADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT-T--CSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc-C--CCEEEEcCCCCccccccccCCCCccH
Confidence 345566532 233555555555554 45443 36778887666553 3 78888743210 1234
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
++++..+.+.....++|||.-.+-.+...+.+++.+||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 5555555443222378999988888999999999999987764
No 306
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=37.78 E-value=93 Score=31.03 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=51.1
Q ss_pred CEEEEEecCHH----HHHHHHHHHHhCCCEEEEE-------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEADDS----TRQIVTALLRKSSYRVTAV-------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDDD~~----~r~~L~~lL~~~Gy~V~~a-------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.||-++.. ..+.++..+++.|.+|+.. .+....+..++... +|+||+....| .+...++++++
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~--~d~v~~~~~~~-~~~~~~~~~~~ 241 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADP--PAVIVVTHFYP-QDQALFMNQFM 241 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSC--CSEEEECCCCH-HHHHHHHHHHT
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcC--CCEEEEccccC-chHHHHHHHHH
Confidence 56666655444 3445556667778887642 36677788887654 89999853222 24667888887
Q ss_pred hcccCCCCeEEEEecCCCHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVST 121 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~ 121 (527)
+... ..+++...+....+.
T Consensus 242 ~~g~--~~~~~~~~~~~~~~~ 260 (419)
T 3h5l_A 242 TDPT--NSLVYLQYGASLAAF 260 (419)
T ss_dssp TSCC--SCEEEECSGGGSHHH
T ss_pred HcCC--CceEEecCCCCcHHH
Confidence 6543 445544334444443
No 307
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=37.74 E-value=70 Score=29.15 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=42.6
Q ss_pred hhccCccccchHHhhhcCcCEEEEEecCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHc
Q 009734 13 EMNGNEGIAKWETFLQRMALRVLLVEADDSTRQIVTALLRKS---SYRVTAVPDGLKAWEVLKG 73 (527)
Q Consensus 13 ~~~~~~~~~~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~---Gy~V~~a~dg~eALe~L~~ 73 (527)
.+++.+ +..|-+++.-. +|+||+|+-..-...+.+|+.. |..+... +.++|++.+..
T Consensus 15 RLIHGQ-~~~W~k~~~~~--~IiVvnD~vA~D~~~k~~lk~A~P~gvk~~i~-sve~ai~~~~~ 74 (163)
T 3p3v_A 15 RLIHGQ-GQLWVKFLNCN--TVIVANDAVSEDKIQQSLMKTVIPSSIAIRFF-SIQKVIDIIHK 74 (163)
T ss_dssp TGGGST-HHHHHHHTTCS--EEEEECHHHHHCHHHHHHHGGGSCTTSEEEEE-CHHHHHHHGGG
T ss_pred cchhhh-hhhhhhhcCCC--EEEEEcccccCCHHHHHHHHhhCCCCceEEEE-EHHHHHHHHhc
Confidence 355888 99999987544 8999999888888888888643 6666554 56778777764
No 308
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=37.64 E-value=43 Score=33.33 Aligned_cols=108 Identities=9% Similarity=0.113 Sum_probs=60.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceE-EEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~~~~~pDL-VLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|++||.||---..-+......|.. .+++++.+.+...+-+..+... .+.+ +..|+ +.|-.. ++
T Consensus 1 M~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~-~~~~~~~~~~-----------~~ll~~---~~ 65 (349)
T 3i23_A 1 MTVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFK-EKGVNFTADL-----------NELLTD---PE 65 (349)
T ss_dssp CCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHH-TTTCEEESCT-----------HHHHSC---TT
T ss_pred CeeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhC-CCCCeEECCH-----------HHHhcC---CC
Confidence 567888888766655444555544 4778776544332211111100 0122 22222 233222 23
Q ss_pred CeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 108 IPVIMMS--SQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
+-+|+++ .....+.+.+|+++|..=|+-||+. .++...+++.+-+
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 114 (349)
T 3i23_A 66 IELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQE 114 (349)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 3344443 3345778889999999999999976 7777776665543
No 309
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=37.64 E-value=1.6e+02 Score=29.97 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCC----C-CCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVD----L-PSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~----M-P~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
..+.++.+-+..+.-|+ .+.+.++|....+. . .|.|.+.-. + -+..-++++.++++.- ...+|||+-.+
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~-G--ad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ipVia~GG 292 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR-G--ASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKRVPIVFDSG 292 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT-T--CSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTSSCEEECSS
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc-C--CCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCCCeEEEECC
Confidence 33445554444454333 46788888776654 3 788887421 1 1234578888887542 23699999999
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 009734 116 QDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (527)
-.+...+.+++.+||+...+=
T Consensus 293 I~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 293 VRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 899999999999999988754
No 310
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.63 E-value=77 Score=29.95 Aligned_cols=66 Identities=17% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYRVTAVP-----DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~-----dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+...+++.||++..+. +.. +.++.+.... +|.||+--..+. .-...++++++. ++|||++..
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiii~~~~~~-~~~~~~~~~~~~----giPvV~~~~ 94 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATY--PSGIATTIPSDT-AFSKSLQRANKL----NIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTC--CSEEEECCCCSS-TTHHHHHHHHHH----TCCEEEESC
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcC--CCEEEEeCCCHH-HHHHHHHHHHHC----CCCEEEEcC
Confidence 3445566677899987754 223 3455554444 898887422221 114566666553 689998865
Q ss_pred C
Q 009734 116 Q 116 (527)
Q Consensus 116 ~ 116 (527)
.
T Consensus 95 ~ 95 (297)
T 3rot_A 95 R 95 (297)
T ss_dssp C
T ss_pred C
Confidence 4
No 311
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=37.59 E-value=60 Score=32.97 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=51.4
Q ss_pred cCEEEEEecCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH
Q 009734 31 ALRVLLVEADDS-----TRQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (527)
Q Consensus 31 ~lrVLLVDDD~~-----~r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL 96 (527)
..|+|||-|... ..+.+...|+..|+++..+. ...++++.+++.. +|+||- +.|..-+++.
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~IIa---vGGGsv~D~A 114 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDS--FDFVVG---LGGGSPMDFA 114 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSC--CSEEEE---EESHHHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eCChHHHHHH
Confidence 468999998733 35677888888888754431 3455666666543 898883 4465667777
Q ss_pred HHHHhcccC---------------CCCeEEEEe
Q 009734 97 TLVMEHEIC---------------KNIPVIMMS 114 (527)
Q Consensus 97 ~~Lr~~~~~---------------~~iPVIilS 114 (527)
+.+...-.. +.+|+|.+-
T Consensus 115 K~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IP 147 (371)
T 1o2d_A 115 KAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIP 147 (371)
T ss_dssp HHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEe
Confidence 777653211 578888763
No 312
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=37.11 E-value=40 Score=33.23 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=58.2
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPD--GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~d--g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.++||.||---..-...+..+.+..+++++.+.+ ...+-+..+... ..-+..| ++.+-.. ++
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~--~~~~~~~-----------~~~ll~~---~~ 67 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYH--LPKAYDK-----------LEDMLAD---ES 67 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCC--CSCEESC-----------HHHHHTC---TT
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcC---CC
Confidence 3479999987655555555555555677765432 222222222111 1112222 1223222 23
Q ss_pred CeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|++. .....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 68 ~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 68 IDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 3344443 334577888999999999999997 46777766665543
No 313
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=37.05 E-value=1.2e+02 Score=30.09 Aligned_cols=95 Identities=14% Similarity=0.018 Sum_probs=57.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCC--CEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 34 VLLVEADDST----RQIVTALLRKSS--YRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 34 VLLVDDD~~~----r~~L~~lL~~~G--y~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
+||-|++-.. ...++..-+..+ .-.+.+.+.+++.+.++.. .|+|++|-.-| -+-.+..+.++... +.
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~aG---aD~I~LDn~~~-~~~~~~v~~l~~~~--~~ 241 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEK---PELILLDNFAV-WQTQTAVQRRDSRA--PT 241 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGC---CSEEEEETCCH-HHHHHHHHHHHHHC--TT
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEECCCCH-HHHHHHHHHhhccC--CC
Confidence 5666654333 223333333333 2344578899999988753 79999996333 22233444444321 34
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+ .|..|+--..+.+......|++.|.+
T Consensus 242 v-~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 242 V-MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp C-EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred e-EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 4 45567777888888899999877653
No 314
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=37.04 E-value=2.4e+02 Score=27.67 Aligned_cols=62 Identities=15% Similarity=0.080 Sum_probs=46.0
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..+.++.+.+.. +|+|.+....| .++++.+++. .++|+... .+.+.+.++...|++.+++-
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 3456777776654 89999988776 5788888764 56777543 45677888999999999874
No 315
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=37.01 E-value=69 Score=28.99 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=47.7
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCC---EEEE-ECCHHHHHHHHHcCCCC-ceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSY---RVTA-VPDGLKAWEVLKGRPRN-IDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy---~V~~-a~dg~eALe~L~~~~~~-pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
+.+...+|.-||-++...+..+..++..|+ .+.. ..|..+.+..+ .... ||+|++|.-+...+--++++.+.+
T Consensus 72 ~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~--~~~~~fD~I~~~~~~~~~~~~~~l~~~~~ 149 (201)
T 2ift_A 72 LSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP--QNQPHFDVVFLDPPFHFNLAEQAISLLCE 149 (201)
T ss_dssp HHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC--CSSCCEEEEEECCCSSSCHHHHHHHHHHH
T ss_pred HHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh--ccCCCCCEEEECCCCCCccHHHHHHHHHh
Confidence 333346899999999999999999988775 4544 34554432211 1246 899999865433344566777754
No 316
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=36.96 E-value=39 Score=31.36 Aligned_cols=70 Identities=10% Similarity=-0.021 Sum_probs=48.0
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeCCCCCC--------CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCC
Q 009734 60 AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI--------SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA 131 (527)
Q Consensus 60 ~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m--------DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~ 131 (527)
.+.+..++.+.. .. .|.|+++-..|.. -|++.++.+...- ..++|||.+-+-. .+.+.+++..|++
T Consensus 94 s~~t~~e~~~A~--~G--aDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~-~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 94 SCHSVEEVKNRK--HF--YDYVFMSPIYDSISKVNYYSTYTAEELREAQKAK-IIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EECSHHHHHTTG--GG--SSEEEECCCC---------CCCCHHHHHHHHHTT-CSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred ecCCHHHHHHHh--hC--CCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhc-CCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 467888876553 22 7999987655422 3678888886531 0368999887765 6778889999999
Q ss_pred EEEe
Q 009734 132 DYLV 135 (527)
Q Consensus 132 DyL~ 135 (527)
.+-+
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8853
No 317
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=36.91 E-value=1.8e+02 Score=28.43 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=58.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
++||.||--=..-...+..+.+..+++++.+ . +...+-+..+... + -+..| ++.+-.. +++
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~-~~~~~-----------~~~~l~~---~~~ 66 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG--A-EAVAS-----------PDEVFAR---DDI 66 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTT--C-EEESS-----------HHHHTTC---SCC
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--C-ceeCC-----------HHHHhcC---CCC
Confidence 4789999876555555555555557887753 3 3333333333211 1 12222 1233221 233
Q ss_pred eEEEEe--cCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 109 PVIMMS--SQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 109 PVIilS--a~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
-+|++. .....+.+..|++.|..=|+-||+. .++...++..+
T Consensus 67 D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 67 DGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp CEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred CEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 344443 3345778889999999999999964 56666655544
No 318
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=36.70 E-value=52 Score=33.09 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
.+.+.+.+++.+.++.. .|+|++| +|+--+--+.++.++.+ .+|..|+--..+.+......|++.+
T Consensus 211 eVEv~tl~e~~eAl~aG---aDiImLD-n~s~~~l~~av~~~~~~------v~leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 211 AIECDNISQVEESLSNN---VDMILLD-NMSISEIKKAVDIVNGK------SVLEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSHHHHHHHHHTT---CSEEEEE-SCCHHHHHHHHHHHTTS------SEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHhhcCc------eEEEEECCCCHHHHHHHHHcCCCEE
No 319
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=36.62 E-value=26 Score=32.11 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=47.8
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEE--EecCC-CHHHHHHHHHcCCCEEEeCC
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIM--MSSQD-SVSTVYKCMMRGAADYLVKP 137 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPVIi--lSa~~-d~~~~~~al~~GA~DyL~KP 137 (527)
+.+++++.++... ..+-++++.+|- .+|.++++.|++. .++.||++ +.. + ....+..+.++||+...+-+
T Consensus 11 ~~~~~~~~~~~~~--~~v~~iev~~~~~~~~g~~~i~~l~~~--~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 11 STEAALELAGKVA--EYVDIIELGTPLIKAEGLSVITAVKKA--HPDKIVFADMKTM-DAGELEADIAFKAGADLVTVLG 85 (207)
T ss_dssp CHHHHHHHHHHHG--GGCSEEEECHHHHHHHCTHHHHHHHHH--STTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEET
T ss_pred CHHHHHHHHHHhh--ccCCEEEECcHHHHhhCHHHHHHHHHh--CCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEec
Confidence 4555555554332 112235555542 3567788888765 24678884 443 3 23347889999999887766
Q ss_pred CCH-HHHHHHHHH
Q 009734 138 VRR-NELRNLWQH 149 (527)
Q Consensus 138 ~~~-eeL~~~L~~ 149 (527)
... ..+..+++.
T Consensus 86 ~~~~~~~~~~~~~ 98 (207)
T 3ajx_A 86 SADDSTIAGAVKA 98 (207)
T ss_dssp TSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHH
Confidence 654 444444443
No 320
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=36.51 E-value=46 Score=30.99 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=51.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE---EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR---VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~---V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
..+|..||-++...+..+..++..|+. |.. ..+..+.+..+.. ..||+||+|...+. -.++++.+... . +
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~--~~fD~V~~d~~~~~--~~~~l~~~~~~-L-k 154 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLAN--DSYQLVFGQVSPMD--LKALVDAAWPL-L-R 154 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCT--TCEEEEEECCCTTT--HHHHHHHHHHH-E-E
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcC--CCcCeEEEcCcHHH--HHHHHHHHHHH-c-C
Confidence 469999999999999999999988864 555 4466665543322 34999999975443 33455555432 1 2
Q ss_pred CCeEEEEe
Q 009734 107 NIPVIMMS 114 (527)
Q Consensus 107 ~iPVIilS 114 (527)
.-.+|++.
T Consensus 155 pGG~lv~d 162 (221)
T 3dr5_A 155 RGGALVLA 162 (221)
T ss_dssp EEEEEEET
T ss_pred CCcEEEEe
Confidence 23455553
No 321
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=36.35 E-value=1.3e+02 Score=28.01 Aligned_cols=80 Identities=23% Similarity=0.239 Sum_probs=52.2
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
..+|..||-++......+..++..|+. |.. ..+..+.+..+.. ...||+|++|...+ +-..+++.+... ..++
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~~~~-LkpG 163 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWALRY-SRPG 163 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHHHHT-CCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHHHHh-cCCC
Confidence 469999999999999999999887763 443 5677665554421 12599999987433 334566666433 2233
Q ss_pred CeEEEEec
Q 009734 108 IPVIMMSS 115 (527)
Q Consensus 108 iPVIilSa 115 (527)
-+|++..
T Consensus 164 -G~lv~~~ 170 (248)
T 3tfw_A 164 -TLIIGDN 170 (248)
T ss_dssp -CEEEEEC
T ss_pred -eEEEEeC
Confidence 4555543
No 322
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=36.26 E-value=57 Score=32.99 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=57.1
Q ss_pred CcCEEEEEecCHHH-HHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDST-RQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~-r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
|++||.||---... ...+..+....+++++.+. +...+-+..+... +. +.. |--+++. . +
T Consensus 1 ~~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~-~~~-------~~~ell~----~---~ 63 (387)
T 3moi_A 1 MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG--IP-VFA-------TLAEMMQ----H---V 63 (387)
T ss_dssp CCEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHT--CC-EES-------SHHHHHH----H---S
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcC--CC-eEC-------CHHHHHc----C---C
Confidence 35788888776333 3344444444567776543 3333333332211 11 221 2222222 2 1
Q ss_pred CCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 107 NIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 107 ~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
++-+|+++ .....+.+..|+++|..=|+-||+. .++...++..+-+
T Consensus 64 ~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 64 QMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHH
Confidence 23333333 3345778889999999999999975 6677766665543
No 323
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=36.23 E-value=2.3e+02 Score=26.21 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhc
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV--------PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a--------~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
..+||++-.+. .+..|...|+..|++|..+ ....+..+.+... .+|+|++= .-.+.+.+-.+ .
T Consensus 110 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~--~~d~v~ft----S~s~v~~~~~~--~ 180 (229)
T 3p9z_A 110 KKSVLYLRAKE-IVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPK--EKSILIFT----AISHAKAFLHY--F 180 (229)
T ss_dssp TCEEEEEEESS-CSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCC--TTCEEEEC----SHHHHHHHHHH--S
T ss_pred CCEEEEECCcc-chHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcC--CCeEEEEE----CHHHHHHHHHH--h
Confidence 46888887764 3677888999888865432 2333455566543 48888762 11233322222 1
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
.....++++.+. ......+.+.|..-++.+-.+.+.|..++..+
T Consensus 181 ~~~~~~~~~aIG----~~Ta~~l~~~G~~v~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 181 EFLENYTAISIG----NTTALYLQEQGIPSYIAKKPSLEACLELALSL 224 (229)
T ss_dssp CCCTTCEEEESS----HHHHHHHHHTTCCEEECSSSSHHHHHHHHHHT
T ss_pred CcccCCEEEEEC----HHHHHHHHHcCCCceeCCCCCHHHHHHHHHHH
Confidence 222345666544 45566667778776677878889998887764
No 324
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=36.06 E-value=2.4e+02 Score=27.81 Aligned_cols=92 Identities=20% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEEecCHHH----HHHHHHHHHhCCCE---EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 34 VLLVEADDST----RQIVTALLRKSSYR---VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 34 VLLVDDD~~~----r~~L~~lL~~~Gy~---V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
+||.||+-.. ...++..-+..+.. .+.+.+.+++.+.++.. .|+|.+| .+.--.+-+.++... .
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld----~~~~~~~k~av~~v~--~ 239 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLD----NFPLEALREAVRRVG--G 239 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEE----SCCHHHHHHHHHHHT--T
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEEC----CCCHHHHHHHHHHhC--C
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+|+++ ++--..+.+......|++.+-+
T Consensus 240 ~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 240 RVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp SSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred CCeEEE-EcCCCHHHHHHHHHcCCCEEEE
No 325
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=36.04 E-value=41 Score=34.71 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=68.3
Q ss_pred cccchHHhhhcCcCEEEEEe--cCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------cC
Q 009734 19 GIAKWETFLQRMALRVLLVE--ADDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLK-------------------GR 74 (527)
Q Consensus 19 ~~~~~e~~~~~~~lrVLLVD--DD~~~---r~~L~~lL~~~Gy~V~~a~dg~eALe~L~-------------------~~ 74 (527)
.-..|.+ ...+|+||- +++.. ...|..+|...|++|..-....+.+.... ..
T Consensus 30 ~~l~w~~----~~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (365)
T 3pfn_A 30 QRLTWNK----SPKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDI 105 (365)
T ss_dssp CBEEESS----CCCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCC
T ss_pred cccccCC----CCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhc
Confidence 4567876 346899996 33434 44455666677998876544333322111 11
Q ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 75 PRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 75 ~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
...+|+||+= |.||. +|+..+... ...+|||-+. .|-.+||. ++..+++..+|.+++...
T Consensus 106 ~~~~DlvI~l----GGDGT-~L~aa~~~~-~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 106 SNQIDFIICL----GGDGT-LLYASSLFQ-GSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp TTTCSEEEEE----SSTTH-HHHHHHHCS-SSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred ccCCCEEEEE----cChHH-HHHHHHHhc-cCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 2347888762 77883 344443221 2467998765 36677887 788888988999888654
No 326
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.88 E-value=1.6e+02 Score=26.45 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=47.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCC--CCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~--~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+|..||-++...+..+..++..|+ .+.. ..+..+.+..+.... ..||+|++|.. ..+-..+++.+..
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~ 167 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERCLQ 167 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHHHH
Confidence 46999999999999999999988775 3443 567777666554311 24999999864 3333455555543
No 327
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=35.86 E-value=29 Score=31.77 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=31.3
Q ss_pred CcCEEEEEecCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE
Q 009734 30 MALRVLLVEADDSTR-QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT 83 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r-~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl 83 (527)
|+++|+|++.+.... ..+...|+..|+++..+.... ....+|.||+
T Consensus 1 m~~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--------~~~~~d~lil 47 (213)
T 3d54_D 1 MKPRACVVVYPGSNCDRDAYHALEINGFEPSYVGLDD--------KLDDYELIIL 47 (213)
T ss_dssp CCCEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTTC--------CCSSCSEEEE
T ss_pred CCcEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecCC--------CcccCCEEEE
Confidence 457999998776553 456888888899888776431 1123777776
No 328
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=35.75 E-value=83 Score=32.63 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=42.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS------SYR---V-TAVPDGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~------Gy~---V-~~a~dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
...+|-+||=|+.+.+..++.|... ..+ + +.+.|+.+.++...+....||+||+|+.-|
T Consensus 227 ~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 227 KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 3468999999999999999987431 112 3 346899888876543333599999998653
No 329
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.46 E-value=1.8e+02 Score=26.85 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg---~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||++.... +. .+.++.+.... +|.||+--.-+. ...+.++++.+ .++|||++...
T Consensus 23 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 95 (291)
T 3l49_A 23 AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQK--PDAIIEQLGNLD-VLNPWLQKIND----AGIPLFTVDTA 95 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHC--CSEEEEESSCHH-HHHHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChh-hhHHHHHHHHH----CCCcEEEecCC
Confidence 34556667788899877653 22 33455554443 898887522110 12345566644 36899988654
No 330
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=35.26 E-value=1e+02 Score=29.69 Aligned_cols=103 Identities=8% Similarity=0.061 Sum_probs=59.0
Q ss_pred cCEE-EEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRV-LLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrV-LLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
..++ +++.+.+ ...+.+.++..|. .|.......+..+++.. .|++|+-- + |..+++.+.. .+
T Consensus 212 ~~~~l~i~G~~~--~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s---g--~~~~~EAma~-----G~ 275 (364)
T 1f0k_A 212 SVTIWHQSGKGS--QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAW----ADVVVCRS---G--ALTVSEIAAA-----GL 275 (364)
T ss_dssp GEEEEEECCTTC--HHHHHHHHHHTTCTTSEEESCCSCHHHHHHH----CSEEEECC---C--HHHHHHHHHH-----TC
T ss_pred CcEEEEEcCCch--HHHHHHHHhhcCCCceEEecchhhHHHHHHh----CCEEEECC---c--hHHHHHHHHh-----CC
Confidence 3564 4455544 2456666665542 23333222333444443 57888742 2 7888888743 57
Q ss_pred eEEEEecCC--C--HHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 109 PVIMMSSQD--S--VSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 109 PVIilSa~~--d--~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
|||+..... + ..........|. ++++.|-+ .++|...|..+
T Consensus 276 Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 276 PALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 898764321 1 112334556777 99999866 89998887754
No 331
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=35.24 E-value=1.6e+02 Score=27.54 Aligned_cols=66 Identities=8% Similarity=0.066 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~d------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...+...+++.||.+..+.. ..+.++.+.... +|.||+--..+. + +.++.+.. ..+|||++..
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~--~~~~~l~~----~~iPvV~~~~ 95 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGN--VDGFVLSSINYN-D--PRVQFLLK----QKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTC--CSEEEECSCCTT-C--HHHHHHHH----TTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCC--CCEEEEeecCCC-c--HHHHHHHh----cCCCEEEECC
Confidence 4455667777888999876531 245667666544 898887432222 2 55666654 3689998865
Q ss_pred C
Q 009734 116 Q 116 (527)
Q Consensus 116 ~ 116 (527)
.
T Consensus 96 ~ 96 (287)
T 3bbl_A 96 S 96 (287)
T ss_dssp C
T ss_pred c
Confidence 3
No 332
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=35.24 E-value=58 Score=32.72 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCCC----CC-CCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVDL----PS-ISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~M----P~-mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
....-..|+..|+.+.. +..|...+..|..-+ +|.|=+|-.+ .. .....+++.|-.....-++.|| .-+.
T Consensus 214 ~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~lp--~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vv-AEGV 290 (340)
T 4hjf_A 214 AAVILKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGV 290 (340)
T ss_dssp HHHHHHHHHHHTCEEEEECTTSSSCGGGTGGGSC--CSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEE-EECC
T ss_pred HHHHHHHHHHcCCCccccCCCCCcchHHHHHhCC--CChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEE-EEeC
Confidence 33444556777887655 667777777887655 8999888533 21 2233455554332221245555 4677
Q ss_pred CCHHHHHHHHHcCCCEE----EeCCCCHHHHHHHHHHHH
Q 009734 117 DSVSTVYKCMMRGAADY----LVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 117 ~d~~~~~~al~~GA~Dy----L~KP~~~eeL~~~L~~v~ 151 (527)
.+.+....+..+|++.+ +.||+..+++...|++..
T Consensus 291 Et~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~~~~ 329 (340)
T 4hjf_A 291 ENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNEAY 329 (340)
T ss_dssp CSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHHhcc
Confidence 88888888999998643 689999999988777644
No 333
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=35.05 E-value=2.3e+02 Score=24.75 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHH
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELR 144 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~ 144 (527)
.++++.|++. .++++++|+.........+-.+|..+|+.......+..
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k~~~~ 88 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEKETAC 88 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCHHHHH
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCcHHHH
Confidence 4778888653 67999999988777766777889998886655555443
No 334
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=34.77 E-value=76 Score=31.48 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHh-CCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.++||.||---..-...+..+.+. .+++++.+ . +...+-+..+. +.+-..+ |--+++. . +
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~----~~~~~~~------~~~~ll~----~---~ 74 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER----TGARGHA------SLTDMLA----Q---T 74 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH----HCCEEES------CHHHHHH----H---C
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH----cCCceeC------CHHHHhc----C---C
Confidence 358999998765555566655555 57887654 3 33333333332 2222221 2122222 1 2
Q ss_pred CCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 107 NIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 107 ~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
++-+|+++. ....+.+..|++.|..=|+-||+ +.++...+++.+-+
T Consensus 75 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 75 DADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 333444433 33567888999999999999996 56677666665543
No 335
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=34.70 E-value=1.4e+02 Score=29.57 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=58.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||.||---..-+......|.. .+++++.+.+....-. +... +.+-+.+ | ++.|-.. +++=
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~--~~~~--~~~~~~~------~----~~~ll~~---~~vD 69 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKV--HADW--PAIPVVS------D----PQMLFND---PSID 69 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHH--HTTC--SSCCEES------C----HHHHHHC---SSCC
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHH--HhhC--CCCceEC------C----HHHHhcC---CCCC
Confidence 48999999766655534444444 4788776443322211 1111 1211111 1 1223222 2343
Q ss_pred EEEEec--CCCHHHHHHHHHcCCCEEEeCC--CCHHHHHHHHHHHHH
Q 009734 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKP--VRRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa--~~d~~~~~~al~~GA~DyL~KP--~~~eeL~~~L~~v~r 152 (527)
+|+++. ....+.+..|+++|..=|+-|| .+.++...+++.+-+
T Consensus 70 ~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 70 LIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 444433 3457888999999999999999 457777776665543
No 336
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=34.46 E-value=22 Score=33.52 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=26.8
Q ss_pred HHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 24 ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 24 e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
+.+...|..+|+|||-.......+...|+..|+++..+.
T Consensus 17 ~~~~~~~~~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~ 55 (218)
T 2vpi_A 17 NLYFQSMEGAVVILDAGAQYGKVIDRRVRELFVQSEIFP 55 (218)
T ss_dssp ------CTTCEEEEECSTTTTHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEecCCeEEEEECCCchHHHHHHHHHHCCCEEEEEE
Confidence 334444567999999877777788899999998777654
No 337
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=34.31 E-value=1e+02 Score=26.67 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=44.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..+|..||-++...+..+..++..|+. +.. ..+..+.+..+. ..+|+|++|.......-.++++.+.
T Consensus 54 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~~~l~ 123 (177)
T 2esr_A 54 MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT---GRFDLVFLDPPYAKETIVATIEALA 123 (177)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC---SCEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc---CCCCEEEECCCCCcchHHHHHHHHH
Confidence 469999999999999999999887763 544 456665444322 2499999984331122345566664
No 338
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.24 E-value=48 Score=31.47 Aligned_cols=83 Identities=13% Similarity=0.058 Sum_probs=50.3
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCC---C-CC-CCHHHHHHHHHhcccCCCCeEE--EEecCCCHHHHHHHHHcCCCEEEe
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVD---L-PS-ISGFALLTLVMEHEICKNIPVI--MMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~---M-P~-mDGlelL~~Lr~~~~~~~iPVI--ilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+..+.++.+.+.. .|+|=+|+. . |. ..|.++++.||+.. ++|+. +|+. +....+..+.++||+.+.+
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~---~~~~~vhlmv~-dp~~~i~~~~~aGadgv~v 91 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIV-EPEKYVEDFAKAGADIISV 91 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC---CSEEEEEEESS-SGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhc---CCcEEEEEEcc-CHHHHHHHHHHcCCCEEEE
Confidence 4445566655433 566666651 1 22 23679999998652 45666 6774 3344677889999999866
Q ss_pred CCC--CHHHHHHHHHHHH
Q 009734 136 KPV--RRNELRNLWQHVW 151 (527)
Q Consensus 136 KP~--~~eeL~~~L~~v~ 151 (527)
-.. ..+++...++.+.
T Consensus 92 h~e~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 92 HVEHNASPHLHRTLCQIR 109 (230)
T ss_dssp ECSTTTCTTHHHHHHHHH
T ss_pred CcccccchhHHHHHHHHH
Confidence 655 3344555555543
No 339
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=34.17 E-value=2.2e+02 Score=29.04 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
..+.++.+.+.. +|+|.+|...... .-++.++++++.- +++|||+- ...+.+.+.++.++||+...+
T Consensus 109 ~~~~~~~lieaG--vd~I~idta~G~~~~~~~~I~~ik~~~--p~v~Vi~G-~v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 109 NEERVKALVEAG--VDVLLIDSSHGHSEGVLQRIRETRAAY--PHLEIIGG-NVATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CHHHHHHHHHTT--CSEEEEECSCTTSHHHHHHHHHHHHHC--TTCEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCC--CCEEEEeCCCCCCHHHHHHHHHHHHhc--CCCceEee-eeCCHHHHHHHHHcCCCEEEE
Confidence 345555555444 8999998643222 2356677787642 57787752 234678888999999988877
No 340
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.17 E-value=93 Score=29.38 Aligned_cols=64 Identities=9% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~dg------~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+... .+.++.+.... +|-||+--.. .+ -++++.+.. ..+|||++...
T Consensus 31 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiI~~~~~--~~-~~~~~~l~~----~~iPvV~i~~~ 100 (295)
T 3hcw_A 31 LLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRM--VDAFILLYSK--EN-DPIKQMLID----ESMPFIVIGKP 100 (295)
T ss_dssp HHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTC--CSEEEESCCC--TT-CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCC--cCEEEEcCcc--cC-hHHHHHHHh----CCCCEEEECCC
Confidence 344556677889998775422 23455565544 8988874211 11 256666654 36899988643
No 341
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=34.05 E-value=2.6e+02 Score=25.03 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=53.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCC-CCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRP-RNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~-~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
..+|..||-++......+..+...|+ .+.. ..+..+.+..+.... ..||+|++|...+ .-..+++.+... ..+
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~-L~p 159 (223)
T 3duw_A 83 GGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKL-SRP 159 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHT-CCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHh-cCC
Confidence 46999999999999999999988776 2443 568877776654321 2499999996533 234566666443 223
Q ss_pred CCeEEEEec
Q 009734 107 NIPVIMMSS 115 (527)
Q Consensus 107 ~iPVIilSa 115 (527)
+ -+|++..
T Consensus 160 g-G~lv~~~ 167 (223)
T 3duw_A 160 G-TVIIGDN 167 (223)
T ss_dssp T-CEEEEES
T ss_pred C-cEEEEeC
Confidence 3 3555543
No 342
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=33.81 E-value=3.6e+02 Score=26.70 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=65.3
Q ss_pred CEEEEEe----cCHHHHHHHHHHHHhC-CCEEE-E-ECCHHHHHHHHHcCCCCceEEEEeCCCCCC--C-----------
Q 009734 32 LRVLLVE----ADDSTRQIVTALLRKS-SYRVT-A-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI--S----------- 91 (527)
Q Consensus 32 lrVLLVD----DD~~~r~~L~~lL~~~-Gy~V~-~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~m--D----------- 91 (527)
..++.++ +.....+.++.+-+.. +.-|. . +.+.++|..+++.. .|.|++-- -++. +
T Consensus 121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~-hgG~~~~~~~~~~~g~~g 196 (336)
T 1ypf_A 121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGI-GPGKVCITKIKTGFGTGG 196 (336)
T ss_dssp CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECS-SCSTTCHHHHHHSCSSTT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEec-CCCceeecccccCcCCch
Confidence 4555555 4455666666666655 34333 2 67788887777653 68888732 2321 1
Q ss_pred -HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 92 -GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 92 -GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
-++++.++++. .++|||.-.+-.+...+.+++.+||+...+
T Consensus 197 ~~~~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 197 WQLAALRWCAKA---ASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp CHHHHHHHHHHT---CSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 36677777653 379999988888999999999999988754
No 343
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.79 E-value=2.2e+02 Score=26.78 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~dg------~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+... .+.++.+.... +|-||+--.... -+.++.+.. ..+|||++...
T Consensus 46 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~i~~~ 115 (305)
T 3huu_A 46 LNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKS--VDGFILLYSLKD---DPIEHLLNE----FKVPYLIVGKS 115 (305)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTC--CSEEEESSCBTT---CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCcCC---cHHHHHHHH----cCCCEEEECCC
Confidence 344556667789998875422 23455555544 898887322221 256666654 36899988654
No 344
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=33.77 E-value=1e+02 Score=28.77 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+. +.. +.++.+.... +|.||+--.-+.. -.++++++.+. ++|||++...
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~~-~~~~~~~~~~~----~iPvV~~~~~ 98 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLK--VDAIFITTLDDVY-IGSAIEEAKKA----GIPVFAIDRM 98 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTT--CSEEEEECSCTTT-THHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEecCChHH-HHHHHHHHHHc----CCCEEEecCC
Confidence 3445666778899877643 232 3455555444 8988874322221 12666777543 6899988654
No 345
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=33.67 E-value=1.5e+02 Score=27.51 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCC-C-CHHHHHHHHHhcccCCCCeEEEE
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPS-I-SGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~-m-DGlelL~~Lr~~~~~~~iPVIil 113 (527)
.+...+.+.+++.||.+..+. +.. +.++.+.... +|-||+--..+. . ...+++++++.. ++|||++
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~~~~----~iPvV~~ 105 (298)
T 3tb6_A 32 SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQH--IDGLIVEPTKSALQTPNIGYYLNLEKN----GIPFAMI 105 (298)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEECCSSTTSCCTTHHHHHHHHHT----TCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCC--CCEEEEecccccccCCcHHHHHHHHhc----CCCEEEE
Confidence 345566777788899877653 233 2445554444 898887432221 1 234677777553 6899988
Q ss_pred ecC
Q 009734 114 SSQ 116 (527)
Q Consensus 114 Sa~ 116 (527)
...
T Consensus 106 ~~~ 108 (298)
T 3tb6_A 106 NAS 108 (298)
T ss_dssp SSC
T ss_pred ecC
Confidence 654
No 346
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=33.31 E-value=1.1e+02 Score=29.60 Aligned_cols=87 Identities=8% Similarity=0.012 Sum_probs=55.0
Q ss_pred CEEEEEe-cCHH---HHHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADDS---TRQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~~---~r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|. |+.. ..+.+++.|++.|.+++. . .+....+..+.... ||+||+... +.+...+++.++
T Consensus 160 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~--~dav~~~~~--~~~a~~~~~~~~ 235 (386)
T 3sg0_A 160 KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATK--PDAVFIASA--GTPAVLPQKALR 235 (386)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTC--CSEEEEECC--SGGGHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcC--CCEEEEecC--cchHHHHHHHHH
Confidence 4666665 4433 334456667777887641 2 35667777776654 899988542 345778899998
Q ss_pred hcccCCCCeEEEEecCCCHHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVYK 124 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~~ 124 (527)
+... ..|+|...+..+......
T Consensus 236 ~~g~--~~~~~~~~~~~~~~~~~~ 257 (386)
T 3sg0_A 236 ERGF--KGAIYQTHGVATEEFIKL 257 (386)
T ss_dssp HTTC--CSEEECCGGGCSHHHHHH
T ss_pred HcCC--CCcEEeccccCCHHHHHh
Confidence 7764 467776666666555443
No 347
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=33.30 E-value=86 Score=30.19 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCC---HHHHHHHHHhcccCCCCeEEEEecC-CCHHHHHHHHHcCCCEEEeC
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPSIS---GFALLTLVMEHEICKNIPVIMMSSQ-DSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~mD---GlelL~~Lr~~~~~~~iPVIilSa~-~d~~~~~~al~~GA~DyL~K 136 (527)
.++++.+.+.. .|+|.+-.. -++. -+++++++|+ .++|||+|+.. ... ..|++.+|+-
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S-~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~i-------~~gvDg~iip 84 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGT-QNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSNV-------VYDVDYLFVP 84 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCC-TTCCHHHHHHHHHHHTT----SCCCEEECCSSCCCC-------CCCSSEEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCC-CCCCHHHHHHHHHHhcC----CCCCEEEecCCcchh-------hcCCCEEEEc
Confidence 33445555443 688888763 2222 3566666654 47999999988 333 7799999876
No 348
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=33.29 E-value=80 Score=28.38 Aligned_cols=47 Identities=19% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCEEEE---ECCHHHHHH-HHH--cCCCCceEEEEeCCC
Q 009734 41 DSTRQIVTALLRKSSYRVTA---VPDGLKAWE-VLK--GRPRNIDLILTEVDL 87 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~---a~dg~eALe-~L~--~~~~~pDLVLlDl~M 87 (527)
......|.++|++.|++|.. +.|-.+.+. .++ .....+|+||+-=.+
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGT 91 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCC
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCc
Confidence 35667899999999998653 556544432 222 111247888886443
No 349
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.25 E-value=1.6e+02 Score=26.36 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=47.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCC--CCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~~--~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
..+|..||-++...+..+..++..|+. |.. ..+..+.+..+.... ..||+|++|...+ +-..+++.+.
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~--~~~~~l~~~~ 161 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA--NTDLYYEESL 161 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG--GHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH--HHHHHHHHHH
Confidence 579999999999999999999887753 443 567777776654310 2499999987432 2344555554
No 350
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=33.23 E-value=36 Score=30.75 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=44.9
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCC-CCCCCHHHHHHHHHhcccCCCCeEEE
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVD-LPSISGFALLTLVMEHEICKNIPVIM 112 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~-MP~mDGlelL~~Lr~~~~~~~iPVIi 112 (527)
|+|||-.......+...|++.|+++..+.... .++.+... .+|.||+-=. -|...+. +.+.|+.. ...++||+-
T Consensus 3 i~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~--~~dglil~Gg~~~~~~~~-~~~~i~~~-~~~~~PilG 77 (189)
T 1wl8_A 3 IVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKAM--NPKGIIFSGGPSLENTGN-CEKVLEHY-DEFNVPILG 77 (189)
T ss_dssp EEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHHT--CCSEEEECCCSCTTCCTT-HHHHHHTG-GGTCSCEEE
T ss_pred EEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhccc--CCCEEEECCCCChhhhhh-HHHHHHHH-hhCCCeEEE
Confidence 99999888778899999999999887765332 22333322 2787776211 2222221 23444432 124678876
Q ss_pred Ee
Q 009734 113 MS 114 (527)
Q Consensus 113 lS 114 (527)
+.
T Consensus 78 IC 79 (189)
T 1wl8_A 78 IC 79 (189)
T ss_dssp ET
T ss_pred Ec
Confidence 65
No 351
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=32.93 E-value=1e+02 Score=29.02 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=45.2
Q ss_pred hHHhhhcCcCEEEEEecC------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH
Q 009734 23 WETFLQRMALRVLLVEAD------DSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL 96 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD------~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL 96 (527)
+..|+. ...+|++|+-- +.....+...|++.|+++..+....+..+.|+. .|.|++ ||.+-..++
T Consensus 24 l~~~~~-~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l----pGG~~~~~~ 94 (229)
T 1fy2_A 24 IANQLN-GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV----GGGNTFQLL 94 (229)
T ss_dssp HHHHHT-TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE----CCSCHHHHH
T ss_pred HHHHhc-CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE----CCCcHHHHH
Confidence 455554 34799999754 366777888899999988877322222234432 466664 677777777
Q ss_pred HHHHhc
Q 009734 97 TLVMEH 102 (527)
Q Consensus 97 ~~Lr~~ 102 (527)
+.|++.
T Consensus 95 ~~l~~~ 100 (229)
T 1fy2_A 95 KESRER 100 (229)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 766553
No 352
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=32.87 E-value=85 Score=30.64 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=21.2
Q ss_pred cCEEEEEecCH--------HHHHHHHHHHHhCCCEEEEE
Q 009734 31 ALRVLLVEADD--------STRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 31 ~lrVLLVDDD~--------~~r~~L~~lL~~~Gy~V~~a 61 (527)
+||||+|-... .....+...|.+.||+|..+
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~ 58 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVL 58 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 47999998642 34555667777789987653
No 353
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=32.75 E-value=1.2e+02 Score=29.34 Aligned_cols=105 Identities=11% Similarity=0.112 Sum_probs=60.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~-a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++||.||---..-...+...|.. .+++++. +. +...+-+..+... ... . .|--+++. . .+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~--~~~-~-------~~~~~ll~-----~--~D 68 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR--IMP-F-------DSIESLAK-----K--CD 68 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT--CCB-C-------SCHHHHHT-----T--CS
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCC-c-------CCHHHHHh-----c--CC
Confidence 47999998876665535555544 5788775 33 3443433333211 111 1 12222222 1 24
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+-+|.+-.....+.+..+++.|..=|+-||+ +.++...+++.+-+
T Consensus 69 ~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 69 CIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred EEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 3443333344677888999999998999998 56677766665543
No 354
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=32.68 E-value=2.2e+02 Score=27.26 Aligned_cols=86 Identities=13% Similarity=0.032 Sum_probs=53.7
Q ss_pred CEEEEEe-cCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~~~---r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|- |+... .+.++..|++.|..+.. + .+...+++.+.... ||+||+-... .+...+++.++
T Consensus 140 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~--~d~i~~~~~~--~~a~~~~~~~~ 215 (358)
T 3hut_A 140 TSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEA--PQAIYLAMAY--EDAAPFLRALR 215 (358)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHC--CSEEEEESCH--HHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcC--CCEEEEccCc--hHHHHHHHHHH
Confidence 4666664 44433 33456667778887653 2 36667777776544 8999986422 24577888888
Q ss_pred hcccCCCCeEEEEecCCCHHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
+... .+|||............
T Consensus 216 ~~g~--~~p~~~~~~~~~~~~~~ 236 (358)
T 3hut_A 216 ARGS--ALPVYGSSALYSPKFID 236 (358)
T ss_dssp HTTC--CCCEEECGGGCSHHHHH
T ss_pred HcCC--CCcEEecCcccCHHHHH
Confidence 7653 67887665555555443
No 355
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=32.53 E-value=79 Score=31.09 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=61.0
Q ss_pred cCEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceE-EEEeCCCCCCCHHHHH---HHHHhcccC
Q 009734 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALL---TLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDD-D~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDL-VLlDl~MP~mDGlelL---~~Lr~~~~~ 105 (527)
++||.||-- -......+..+. ..+.+++.+.+.......+.... +.+ ++.| --+++ +.|+...
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~-~~~~~lvav~d~~~~~~~~~~~~--~~~~~~~~-------~~~ll~~~~~l~~~~-- 70 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIK-EVGGVLVASLDPATNVGLVDSFF--PEAEFFTE-------PEAFEAYLEDLRDRG-- 70 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHH-HTTCEEEEEECSSCCCGGGGGTC--TTCEEESC-------HHHHHHHHHHHHHTT--
T ss_pred ceEEEEECCChHHHHHHHHHHH-hCCCEEEEEEcCCHHHHHHHhhC--CCCceeCC-------HHHHHHHhhhhcccC--
Confidence 478999987 334444444444 45788776544332222222211 222 2222 12333 3333211
Q ss_pred CCCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 106 KNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 106 ~~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
+++=+|++.. ....+.+..|+++|..=|+-||+ +.++...++..+-+.
T Consensus 71 ~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 71 EGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 3444444443 34678899999999999999997 467777776655433
No 356
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=32.49 E-value=65 Score=28.94 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=39.7
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m 90 (527)
|+|||.--.-.+...|...|.+.|++|+.+.-..+.+..+... ...++..|+.-+..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~--~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA--TVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT--TSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC--CceEEecccccccH
Confidence 4789999988888888888888899988765434444444332 36777777765543
No 357
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=32.39 E-value=85 Score=31.26 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=23.3
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
++++|||+..-... ..+...++..||+|+.+.
T Consensus 10 ~~~~ili~g~g~~~-~~~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 10 AATRVMLLGSGELG-KEVAIECQRLGVEVIAVD 41 (391)
T ss_dssp TCCEEEEESCSHHH-HHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHcCCEEEEEE
Confidence 45799999877544 455666778899887754
No 358
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=32.38 E-value=68 Score=28.72 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=42.0
Q ss_pred cCEEEEEecCH-HHHHHHHHHHHhCCC---------EEEEECCHHH---HHHHHHcCCC-CceEEEEeCCCCCCCH----
Q 009734 31 ALRVLLVEADD-STRQIVTALLRKSSY---------RVTAVPDGLK---AWEVLKGRPR-NIDLILTEVDLPSISG---- 92 (527)
Q Consensus 31 ~lrVLLVDDD~-~~r~~L~~lL~~~Gy---------~V~~a~dg~e---ALe~L~~~~~-~pDLVLlDl~MP~mDG---- 92 (527)
..+|++++-+. .....+..+++..|+ .+....++.+ .++.++.... .|++||+|--...++.
T Consensus 45 ~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 45 GKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp CSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 45788888654 122334445555444 2222334422 3433322111 3999999976555543
Q ss_pred -------HHHHHHHHhcccCCCCeEEEEec
Q 009734 93 -------FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 93 -------lelL~~Lr~~~~~~~iPVIilSa 115 (527)
.++++.|+......+++||+++-
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h 154 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQ 154 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 23444444332112567776654
No 359
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=32.35 E-value=2.5e+02 Score=28.85 Aligned_cols=78 Identities=6% Similarity=-0.006 Sum_probs=51.0
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCE---EEE-ECCHHHHHH-HHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYR---VTA-VPDGLKAWE-VLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICK 106 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~---V~~-a~dg~eALe-~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~ 106 (527)
.+|+.||-++...+.+++-++..|.+ +.. ..|..+.+. .+ ...||+|++|- ++.. .++++.+...- .
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~L--k 149 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSM--K 149 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHE--E
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHh--C
Confidence 58999999999999999999988873 544 346665544 32 23499999997 4432 24555443321 1
Q ss_pred CCeEEEEecCC
Q 009734 107 NIPVIMMSSQD 117 (527)
Q Consensus 107 ~iPVIilSa~~ 117 (527)
.-.+|++|..+
T Consensus 150 ~gGll~~t~t~ 160 (392)
T 3axs_A 150 RGGILSLTATD 160 (392)
T ss_dssp EEEEEEEEECC
T ss_pred CCCEEEEEecc
Confidence 22477676644
No 360
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=32.32 E-value=1.5e+02 Score=30.54 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=52.2
Q ss_pred EECCHHHHHHHHHcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 60 AVPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 60 ~a~dg~eALe~L~~~~~~pDLVLlDl~M-----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
.+.+.++|..+.+. . +|.|++.-.- -+..-++++.++++. ....+|||+-.+-.+...+.+++.+||+...
T Consensus 259 gv~~~e~A~~a~~a-G--ad~I~vs~~ggr~~~~g~~~~~~l~~v~~a-v~~~ipVia~GGI~~g~Dv~kalalGAd~V~ 334 (392)
T 2nzl_A 259 GILRGDDAREAVKH-G--LNGILVSNHGARQLDGVPATIDVLPEIVEA-VEGKVEVFLDGGVRKGTDVLKALALGAKAVF 334 (392)
T ss_dssp EECCHHHHHHHHHT-T--CCEEEECCGGGTSSTTCCCHHHHHHHHHHH-HTTSSEEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred ecCCHHHHHHHHHc-C--CCEEEeCCCCCCcCCCCcChHHHHHHHHHH-cCCCCEEEEECCCCCHHHHHHHHHhCCCeeE
Confidence 46778888777654 3 7888884211 123456777777654 2236999998888899999999999998886
Q ss_pred eC
Q 009734 135 VK 136 (527)
Q Consensus 135 ~K 136 (527)
+=
T Consensus 335 iG 336 (392)
T 2nzl_A 335 VG 336 (392)
T ss_dssp EC
T ss_pred EC
Confidence 43
No 361
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=32.32 E-value=1.6e+02 Score=29.33 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=58.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++||.||---..-+......|.. .+++++.+. +...+- .... ---+..| ++.+-.. ++
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~--~~~~~~~-----------~~~ll~~---~~ 67 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---RDLP--DVTVIAS-----------PEAAVQH---PD 67 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---HHCT--TSEEESC-----------HHHHHTC---TT
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---hhCC--CCcEECC-----------HHHHhcC---CC
Confidence 58999999866555435555554 478877643 333222 1111 1112222 1233222 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+=+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 68 ~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 68 VDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHH
Confidence 33444433 34678889999999999999997 56777766665543
No 362
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=32.17 E-value=86 Score=30.44 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=49.1
Q ss_pred CEEEEEe-cCHH---HHHHHHHHHHhCCCEEE---EE----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADDS---TRQIVTALLRKSSYRVT---AV----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~~---~r~~L~~lL~~~Gy~V~---~a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|- ++.. ....+++.|++.|..++ .+ .+....+..++... ||+||+.. .+.+...+++.++
T Consensus 142 ~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 217 (364)
T 3lop_A 142 TRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAAD--VQAIFLGA--TAEPAAQFVRQYR 217 (364)
T ss_dssp CCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSC--CSEEEEES--CHHHHHHHHHHHH
T ss_pred ceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCC--CCEEEEec--CcHHHHHHHHHHH
Confidence 4565554 4443 33456666777787543 12 36677777777654 89999853 2345677888887
Q ss_pred hcccCCCCeEEEEecCCC
Q 009734 101 EHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d 118 (527)
+.. -.+|||.......
T Consensus 218 ~~g--~~~~~i~~~~~~~ 233 (364)
T 3lop_A 218 ARG--GEAQLLGLSSIDP 233 (364)
T ss_dssp HTT--CCCEEEECTTSCH
T ss_pred HcC--CCCeEEEeccCCh
Confidence 765 3568664444333
No 363
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=32.09 E-value=1.6e+02 Score=29.28 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=58.6
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||.||---..-+......|.. .+++++.+.+....- ..+... .--+..|+ +.+-.. +++=
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~--~~~~~~~~-----------~~ll~~---~~vD 67 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFP--DAEVVHEL-----------EEITND---PAIE 67 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCT--TSEEESST-----------HHHHTC---TTCC
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCC--CCceECCH-----------HHHhcC---CCCC
Confidence 47899998766555434455544 477876654322211 111111 11222232 222222 2343
Q ss_pred EEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 110 VIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+|+++. ....+.+..|+++|..=|+-||+ +.++...++..+-+
T Consensus 68 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 114 (358)
T 3gdo_A 68 LVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADE 114 (358)
T ss_dssp EEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 444433 34578889999999999999996 56777766665543
No 364
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.86 E-value=1.9e+02 Score=29.57 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHhhhcCc-CEEEEEecCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 24 ETFLQRMA-LRVLLVEADDST-----RQIVTALLRKSSYRVTAVP---------DGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 24 e~~~~~~~-lrVLLVDDD~~~-----r~~L~~lL~~~Gy~V~~a~---------dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
..++.+.. .|+|||-|+... .+.+...|+..|+.+..+. ...++++.+++.. +|+||- +.
T Consensus 35 ~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vG 109 (407)
T 1vlj_A 35 GEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEK--VEAVLG---VG 109 (407)
T ss_dssp HHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTT--CSEEEE---EE
T ss_pred HHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcC--CCEEEE---eC
Confidence 34444433 689999885533 4556777777888776553 3455667776654 898883 44
Q ss_pred CCCHHHHHHHHHhcc---------------cCCCCeEEEEe
Q 009734 89 SISGFALLTLVMEHE---------------ICKNIPVIMMS 114 (527)
Q Consensus 89 ~mDGlelL~~Lr~~~---------------~~~~iPVIilS 114 (527)
|..-+++.+.+...- ..+.+|+|.+-
T Consensus 110 GGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IP 150 (407)
T 1vlj_A 110 GGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVL 150 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEE
T ss_pred ChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEe
Confidence 666677777775431 01578988763
No 365
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=31.81 E-value=1.9e+02 Score=27.00 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HH---HHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEE
Q 009734 43 TRQIVTALLRKSSYRVTAVPD---G---LK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~d---g---~e---ALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
+...+...+++.||.+..+.. . .+ .++.+.... +|-||+--..+ + -+.++.++.. .+|||++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~-~~~~~~l~~~----~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRD--CDGVVVISHDL--H-DEDLDELHRM----HPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTT--CSEEEECCSSS--C-HHHHHHHHHH----CSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcC--ccEEEEecCCC--C-HHHHHHHhhc----CCCEEEE
Confidence 344556667788998776532 1 23 566665544 89888743222 2 3566666542 6899988
Q ss_pred ecC
Q 009734 114 SSQ 116 (527)
Q Consensus 114 Sa~ 116 (527)
...
T Consensus 97 ~~~ 99 (290)
T 2rgy_A 97 NRA 99 (290)
T ss_dssp SSC
T ss_pred ccc
Confidence 653
No 366
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=31.73 E-value=59 Score=30.53 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=53.1
Q ss_pred HHHhCCCEEEE---ECCH---HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHH
Q 009734 50 LLRKSSYRVTA---VPDG---LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVY 123 (527)
Q Consensus 50 lL~~~Gy~V~~---a~dg---~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~ 123 (527)
..++.|..+.. .-|. ..+++.++... ||+| -.||+.-- ++++++++.- ++|||+=-.-.+.+.+.
T Consensus 96 ~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~--PD~i---EiLPGi~p-~iI~~i~~~~---~~PiIaGGlI~~~edv~ 166 (192)
T 3kts_A 96 KAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQ--PDCI---ELLPGIIP-EQVQKMTQKL---HIPVIAGGLIETSEQVN 166 (192)
T ss_dssp HHHHTTCEEEEEEECCSHHHHHHHHHHHHHHC--CSEE---EEECTTCH-HHHHHHHHHH---CCCEEEESSCCSHHHHH
T ss_pred HHHHCCCeEEEEEEEEEcchHHHHHHHHhhcC--CCEE---EECCchhH-HHHHHHHHhc---CCCEEEECCcCCHHHHH
Confidence 34556764332 2233 34677777655 8987 34688654 7889987753 78999755667899999
Q ss_pred HHHHcCCCEEEe
Q 009734 124 KCMMRGAADYLV 135 (527)
Q Consensus 124 ~al~~GA~DyL~ 135 (527)
.|+++||+..-+
T Consensus 167 ~al~aGA~aVsT 178 (192)
T 3kts_A 167 QVIASGAIAVTT 178 (192)
T ss_dssp HHHTTTEEEEEE
T ss_pred HHHHcCCeEEEe
Confidence 999999977654
No 367
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=31.46 E-value=1.8e+02 Score=30.53 Aligned_cols=58 Identities=21% Similarity=0.353 Sum_probs=35.3
Q ss_pred hhcCcCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeCC
Q 009734 27 LQRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEVD 86 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl~ 86 (527)
+.+...+|+||+-|+ ...+.|+.+-+..|..+.... ++ .++++.++... +|+||+|.-
T Consensus 124 l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~--~DvVIIDTa 191 (443)
T 3dm5_A 124 FQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKG--VDIIIVDTA 191 (443)
T ss_dssp HHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTT--CSEEEEECC
T ss_pred HHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCC--CCEEEEECC
Confidence 334567888888664 334445555556677665532 32 35566665543 899999963
No 368
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=31.43 E-value=1.4e+02 Score=25.31 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=38.9
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDL 87 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~M 87 (527)
+..+|+|+--- .+...+...|...|++|+.+..-.+.++.++... +.++..|..-
T Consensus 6 ~~~~viIiG~G-~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g--~~~i~gd~~~ 60 (140)
T 3fwz_A 6 ICNHALLVGYG-RVGSLLGEKLLASDIPLVVIETSRTRVDELRERG--VRAVLGNAAN 60 (140)
T ss_dssp CCSCEEEECCS-HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT--CEEEESCTTS
T ss_pred CCCCEEEECcC-HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcC--CCEEECCCCC
Confidence 45689999875 4566777788888999888776666667666543 6667666543
No 369
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=31.37 E-value=50 Score=30.29 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=38.9
Q ss_pred hhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCc-eEEEEeCC
Q 009734 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNI-DLILTEVD 86 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~p-DLVLlDl~ 86 (527)
+...+.++|||.--.-.+...+...|.+.|++|+.+.-..+.++.+.... + .++..|+.
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~--~~~~~~~Dl~ 75 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERG--ASDIVVANLE 75 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTT--CSEEEECCTT
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCC--CceEEEcccH
Confidence 33345679999999999999988888888999887543333333343322 6 67777776
No 370
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=31.35 E-value=76 Score=31.28 Aligned_cols=113 Identities=10% Similarity=0.003 Sum_probs=60.9
Q ss_pred cCEEEEEec-CHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHH---HHHHhcccCC
Q 009734 31 ALRVLLVEA-DDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALL---TLVMEHEICK 106 (527)
Q Consensus 31 ~lrVLLVDD-D~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL---~~Lr~~~~~~ 106 (527)
++||.||-- -..-...+..+ ...+.+++.+.+.......+.... +.+-+.+ |--+++ +.|.+. ..+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~~~~~~~--~~~~~~~------~~~~ll~~~~~l~~~-~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVGIIDSIS--PQSEFFT------EFEFFLDHASNLKRD-SAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCGGGGGTC--TTCEEES------SHHHHHHHHHHHTTS-TTT
T ss_pred ceEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHHHHHhhC--CCCcEEC------CHHHHHHhhhhhhhc-cCC
Confidence 478888887 33334444444 445788776544332222222211 2222221 112333 233210 013
Q ss_pred CCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 107 NIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 107 ~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
++=+|++.. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 444444443 34678899999999999999995 577777766655443
No 371
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=31.35 E-value=1.1e+02 Score=29.99 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
+...+...+++.||.+..+. +.. +.++.+.... +|-||+- |....-+.++.+.. ..+|||++.
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiI~~---~~~~~~~~~~~l~~----~~iPvV~i~ 156 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRR--PEAMVLS---YDGHTEQTIRLLQR----ASIPIVEIW 156 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTC--CSEEEEE---CSCCCHHHHHHHHH----CCSCEEEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEe---CCCCCHHHHHHHHh----CCCCEEEEC
Confidence 34456666778899887653 232 3455554444 8877773 22112356666654 368999884
No 372
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=31.35 E-value=1.3e+02 Score=30.12 Aligned_cols=98 Identities=9% Similarity=0.073 Sum_probs=56.1
Q ss_pred HHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcc
Q 009734 24 ETFLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHE 103 (527)
Q Consensus 24 e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~ 103 (527)
...|.-..|||||+-- -.+...+...|.+ .++|..+.-..+.++.+... ...+-+|+. |--.+.+.++.
T Consensus 9 ~~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~---~~~~~~d~~----d~~~l~~~~~~-- 77 (365)
T 3abi_A 9 HHHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF---ATPLKVDAS----NFDKLVEVMKE-- 77 (365)
T ss_dssp -------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT---SEEEECCTT----CHHHHHHHHTT--
T ss_pred cccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc---CCcEEEecC----CHHHHHHHHhC--
Confidence 3445556789999987 8888888888865 47887765455556666532 455656652 33334444432
Q ss_pred cCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 104 ICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 104 ~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.++-|.++-.+-....+..|++.|++ |+.
T Consensus 78 --~DvVi~~~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 78 --FELVIGALPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp --CSEEEECCCGGGHHHHHHHHHHHTCE-EEE
T ss_pred --CCEEEEecCCcccchHHHHHHhcCcc-eEe
Confidence 23322222233356778888999974 554
No 373
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=31.30 E-value=80 Score=27.91 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=25.3
Q ss_pred HHHHHHcCCCCceEEEEeC----CCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHH
Q 009734 67 AWEVLKGRPRNIDLILTEV----DLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCM 126 (527)
Q Consensus 67 ALe~L~~~~~~pDLVLlDl----~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al 126 (527)
..++++... +|+||.=. ..| .-||+.+.+.--.. +||++ |..+....+.+++
T Consensus 66 I~d~I~~ge--IdlVInt~~pl~~~~h~~D~~~IrR~A~~~----~IP~~--T~latA~a~v~al 122 (134)
T 2xw6_A 66 MGARVAEGR--ILAVIFFRDPLTAQPHEPDVQALLRVCDVH----GVPLA--TNPMAAEALIPWL 122 (134)
T ss_dssp HHHHHHTTC--EEEEEEECCTTTCCTTSCCSHHHHHHHHHH----TCCEE--CSHHHHHHHHHHH
T ss_pred HHHHHHCCC--ccEEEEccCcccCCCccchHHHHHHHHHHc----CCCeE--cCHHHHHHHHHHH
Confidence 345555433 66666522 244 55666555544332 45554 4444444444444
No 374
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=31.25 E-value=1.6e+02 Score=27.38 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=48.1
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcC---CCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGR---PRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~---~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+|..||-++...+..+..++..|+ .|.. ..+..+.+..+... ...||+||+|...+ +-..+++.+..
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHHHH
Confidence 46999999999999999999998887 2443 56787777655311 13499999996432 23455555543
No 375
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=31.24 E-value=68 Score=27.97 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=52.0
Q ss_pred hHHhhhcCcCEEEEEecC---HHHHHHHHHHHHhCCCEEEEECCHH------HHHHHHHcCCCCceEEEEeCCCCCCCHH
Q 009734 23 WETFLQRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVPDGL------KAWEVLKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD---~~~r~~L~~lL~~~Gy~V~~a~dg~------eALe~L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
.+.++.. +.+|.||--. ......+...|...||+|..+.... .+...+.+-...+|++++ ..|.-.-.
T Consensus 15 l~~ll~~-p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi--~vp~~~~~ 91 (144)
T 2d59_A 15 IREILTR-YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL--FVKPKLTM 91 (144)
T ss_dssp HHHHHHH-CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEE--CSCHHHHH
T ss_pred HHHHHcC-CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEE--EeCHHHHH
Confidence 3455532 3588999763 2344455556777899877765321 111222222234677776 34555556
Q ss_pred HHHHHHHhcccCCCCeEEEE-ecCCCHHHHHHHHHcCC
Q 009734 94 ALLTLVMEHEICKNIPVIMM-SSQDSVSTVYKCMMRGA 130 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIil-Sa~~d~~~~~~al~~GA 130 (527)
++++.+.+.. ++.|++ ++....+.+..+.+.|+
T Consensus 92 ~vv~~~~~~g----i~~i~~~~g~~~~~l~~~a~~~Gi 125 (144)
T 2d59_A 92 EYVEQAIKKG----AKVVWFQYNTYNREASKKADEAGL 125 (144)
T ss_dssp HHHHHHHHHT----CSEEEECTTCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcC----CCEEEECCCchHHHHHHHHHHcCC
Confidence 6666654432 233333 33334444444555554
No 376
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=30.86 E-value=91 Score=30.86 Aligned_cols=102 Identities=16% Similarity=0.229 Sum_probs=60.2
Q ss_pred cCEEEEEecCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 31 ALRVLLVEADDSTR-QIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 31 ~lrVLLVDDD~~~r-~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
++||.||---..-+ ..+..+....+++++.+.+... .. +.+-..+ |--+++. .. +++-
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~-------~~--~g~~~~~------~~~~ll~---~~---~~vD 83 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHG-------TV--EGVNSYT------TIEAMLD---AE---PSID 83 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSC-------CC--TTSEEES------SHHHHHH---HC---TTCC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCCh-------hh--cCCCccC------CHHHHHh---CC---CCCC
Confidence 48999999876665 4555555556788777554331 11 2221111 2122222 21 1333
Q ss_pred EEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 110 VIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 110 VIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
+|++.. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 84 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~ 131 (330)
T 4ew6_A 84 AVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQ 131 (330)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 444433 34677889999999999999997 667777766655443
No 377
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=30.74 E-value=1.7e+02 Score=29.72 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=61.8
Q ss_pred HHHHHHHHHhCCC--EEEE-EC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 44 RQIVTALLRKSSY--RVTA-VP---DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 44 r~~L~~lL~~~Gy--~V~~-a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
.+.++.+-+..|. .+.. +. +..+|++.++.- ..+++.+++--+|. +-++.+++|++.- .+||+.--...
T Consensus 205 ~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~~---~iPIa~dE~~~ 279 (410)
T 2gl5_A 205 EARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRST---TIPIATGERSY 279 (410)
T ss_dssp HHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHHC---SSCEEECTTCC
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhhC---CCCEEecCCcC
Confidence 3444444444453 3322 22 677887777643 23788888866664 3377778887652 68988654555
Q ss_pred CHHHHHHHHHcCCCEEE-eCCCCHHHHHHH
Q 009734 118 SVSTVYKCMMRGAADYL-VKPVRRNELRNL 146 (527)
Q Consensus 118 d~~~~~~al~~GA~DyL-~KP~~~eeL~~~ 146 (527)
+.....++++.|+.|++ +||-...-|...
T Consensus 280 ~~~~~~~~i~~~~~d~v~ik~~~~GGit~~ 309 (410)
T 2gl5_A 280 TRWGYRELLEKQSIAVAQPDLCLCGGITEG 309 (410)
T ss_dssp TTHHHHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred CHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 77888899999976665 788775444433
No 378
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=30.59 E-value=69 Score=32.02 Aligned_cols=106 Identities=12% Similarity=0.140 Sum_probs=59.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHH-HhCCCEEEEECCHHHHHHHHHcCCCCceE-EEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALL-RKSSYRVTAVPDGLKAWEVLKGRPRNIDL-ILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL-~~~Gy~V~~a~dg~eALe~L~~~~~~pDL-VLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.++||.||---..-+......| ...+++++.+.+.... .+...- +.+ +..|+ +.|-.. ++
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~~~--~~~~~~~~~-----------~~ll~~---~~ 65 (362)
T 3fhl_A 4 EIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKE--LSKERY--PQASIVRSF-----------KELTED---PE 65 (362)
T ss_dssp CCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGTTC--TTSEEESCS-----------HHHHTC---TT
T ss_pred CceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHHhC--CCCceECCH-----------HHHhcC---CC
Confidence 3478999887665554334444 4447887765433211 122111 121 22232 233222 23
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHh
Q 009734 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWRR 153 (527)
Q Consensus 108 iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~rr 153 (527)
+-+|+++. ....+.+..|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 66 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (362)
T 3fhl_A 66 IDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKK 115 (362)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 44444433 33578889999999999999998 677777776655443
No 379
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=30.52 E-value=1.6e+02 Score=31.54 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC------CCHHHHHHHHHhcc----cCCCCeEE
Q 009734 44 RQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------ISGFALLTLVMEHE----ICKNIPVI 111 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~------mDGlelL~~Lr~~~----~~~~iPVI 111 (527)
.+.++.+-+..+.-|+ .+.+.++|..+.+. . +|.|++.- ..+ ...++++..+.+.- ....+|||
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a-G--ad~I~vs~-hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVi 407 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEI-G--VSGVVLSN-HGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVF 407 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHT-T--CSEEEECC-TTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc-C--CCEEEEcC-CCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEE
Confidence 3444444444454333 46777777766654 3 78888842 122 23467777765432 12479999
Q ss_pred EEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 112 MMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 112 ilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+-.+-.+...+.+++.+||+...+=
T Consensus 408 a~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 408 VDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEC
Confidence 9999999999999999999887643
No 380
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=30.49 E-value=1.6e+02 Score=29.96 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=50.7
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC---------------CCE-EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS---------------SYR-VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~---------------Gy~-V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
..+|+.||-++...+.++.-++.. |.. +.. ..|..+.+..+. ..||+|++|- |+ ...
T Consensus 71 ~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~~---~~fD~I~lDP--~~-~~~ 144 (378)
T 2dul_A 71 AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERH---RYFHFIDLDP--FG-SPM 144 (378)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHST---TCEEEEEECC--SS-CCH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhcc---CCCCEEEeCC--CC-CHH
Confidence 368999999999999999988876 653 443 467776655431 2499999884 33 334
Q ss_pred HHHHHHHhcccCCCCeEEEEecC
Q 009734 94 ALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa~ 116 (527)
++++.....- +.-.+|++|..
T Consensus 145 ~~l~~a~~~l--k~gG~l~vt~t 165 (378)
T 2dul_A 145 EFLDTALRSA--KRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHHE--EEEEEEEEEEC
T ss_pred HHHHHHHHhc--CCCCEEEEEee
Confidence 5665543221 22246666654
No 381
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=30.45 E-value=1.8e+02 Score=27.95 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=43.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC--C----------CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCC-----CH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS--S----------YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSI-----SG 92 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~--G----------y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-----DG 92 (527)
..+|..||=++...+..++.+ .. + -++. ...|+.+.+.. . ..||+||+|...|.. ..
T Consensus 98 ~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~--~--~~fD~Ii~d~~~~~~~~~~l~~ 172 (281)
T 1mjf_A 98 VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--N--RGFDVIIADSTDPVGPAKVLFS 172 (281)
T ss_dssp CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--C--CCEEEEEEECCCCC-----TTS
T ss_pred CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc--c--CCeeEEEECCCCCCCcchhhhH
Confidence 469999999999999988877 32 2 2233 35677665543 2 349999999865421 12
Q ss_pred HHHHHHHHh
Q 009734 93 FALLTLVME 101 (527)
Q Consensus 93 lelL~~Lr~ 101 (527)
.++++.+++
T Consensus 173 ~~~l~~~~~ 181 (281)
T 1mjf_A 173 EEFYRYVYD 181 (281)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666654
No 382
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=30.36 E-value=1.2e+02 Score=29.24 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=46.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCCCC--H---HHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSS-----YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPSIS--G---FALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~G-----y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD--G---lelL~~L 99 (527)
..+|..||=++...+..++.+...+ -++. ...|+.+.+... ...||+||+|...|... . .++++.+
T Consensus 102 ~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~ 178 (283)
T 2i7c_A 102 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPIGPAETLFNQNFYEKI 178 (283)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTTTGGGGGSSHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 4699999999999999998886431 2333 356777655432 23599999998665321 1 3666666
Q ss_pred Hhc
Q 009734 100 MEH 102 (527)
Q Consensus 100 r~~ 102 (527)
++.
T Consensus 179 ~~~ 181 (283)
T 2i7c_A 179 YNA 181 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 383
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=30.23 E-value=92 Score=30.74 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=59.0
Q ss_pred HHhhhcC-cCEEEEEecCHHHHHHHHHH------HHh-CCCEEEEECCH--HHHHHHHHcCCCCceEEEEeCCCCCCCHH
Q 009734 24 ETFLQRM-ALRVLLVEADDSTRQIVTAL------LRK-SSYRVTAVPDG--LKAWEVLKGRPRNIDLILTEVDLPSISGF 93 (527)
Q Consensus 24 e~~~~~~-~lrVLLVDDD~~~r~~L~~l------L~~-~Gy~V~~a~dg--~eALe~L~~~~~~pDLVLlDl~MP~mDGl 93 (527)
+-+++.| ++||-||-==..-+..+..+ +.. .+++++.+.|. +.|-+..++.. ..-+..|+
T Consensus 17 ~~~~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------- 86 (393)
T 4fb5_A 17 NLYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFG--FEKATADW-------- 86 (393)
T ss_dssp -------CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHT--CSEEESCH--------
T ss_pred CccccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhC--CCeecCCH--------
Confidence 3456656 48999998654433333222 222 35677765432 22333333222 23344442
Q ss_pred HHHHHHHhcccCCCCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 94 ALLTLVMEHEICKNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 94 elL~~Lr~~~~~~~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
+.|-+. +++=+|+++. ....+.+..|+++|..=|+-||+. .++...+++.+-+
T Consensus 87 ---~ell~~---~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 87 ---RALIAD---PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAER 143 (393)
T ss_dssp ---HHHHHC---TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred ---HHHhcC---CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHh
Confidence 333222 2343444433 346889999999999999999975 5666666665533
No 384
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=29.98 E-value=1.2e+02 Score=31.43 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=33.3
Q ss_pred hcCcCEEEEEecCHHHHHHHHHHHHhCCCE-EEEE-----------------CCHHHHHHHHHcCCCCceEEEEe
Q 009734 28 QRMALRVLLVEADDSTRQIVTALLRKSSYR-VTAV-----------------PDGLKAWEVLKGRPRNIDLILTE 84 (527)
Q Consensus 28 ~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~-V~~a-----------------~dg~eALe~L~~~~~~pDLVLlD 84 (527)
..+.||||||-.......+..++.+..++. |.++ .+.+..++.++... +|+|+..
T Consensus 18 ~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~~--id~vv~g 90 (442)
T 3lp8_A 18 GPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKEK--IELVVIG 90 (442)
T ss_dssp --CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHTT--CCEEEEC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHhC--CCEEEEC
Confidence 345689999999865544444544444543 3332 24456667776654 9999974
No 385
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=29.89 E-value=2.2e+02 Score=24.93 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=44.0
Q ss_pred CEEEEEecCHHHH--HHHHHHHHhCCCEEEE--EC---CHHHHHHH----HHcCCCCceEEEEeCCCCCCC--H------
Q 009734 32 LRVLLVEADDSTR--QIVTALLRKSSYRVTA--VP---DGLKAWEV----LKGRPRNIDLILTEVDLPSIS--G------ 92 (527)
Q Consensus 32 lrVLLVDDD~~~r--~~L~~lL~~~Gy~V~~--a~---dg~eALe~----L~~~~~~pDLVLlDl~MP~mD--G------ 92 (527)
.|||++-|.-... ..+.+.|... +.|.. .. .....++. +... .||+|++.+..-++. -
T Consensus 21 prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~pd~Vvi~~G~ND~~~~~~~~~~~ 97 (200)
T 4h08_A 21 PHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVLKNT--KFDVIHFNNGLHGFDYTEEEYDKS 97 (200)
T ss_dssp CEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHHHHS--CCSEEEECCCSSCTTSCHHHHHHH
T ss_pred CeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHHhcC--CCCeEEEEeeeCCCCCCHHHHHHH
Confidence 4899999986542 3455555443 33332 11 22233332 2233 499999976554431 1
Q ss_pred -HHHHHHHHhcccCCCCeEEEEecC
Q 009734 93 -FALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 93 -lelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
-+++++|++.. ++.+||+++..
T Consensus 98 l~~ii~~l~~~~--p~~~ii~~~~~ 120 (200)
T 4h08_A 98 FPKLIKIIRKYA--PKAKLIWANTT 120 (200)
T ss_dssp HHHHHHHHHHHC--TTCEEEEECCC
T ss_pred HHHHHHHHhhhC--CCccEEEeccC
Confidence 24556666543 67788887653
No 386
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=29.83 E-value=1.3e+02 Score=29.43 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=46.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHh--CC----CEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCCC-CCH-------HHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRK--SS----YRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLPS-ISG-------FAL 95 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~--~G----y~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP~-mDG-------lel 95 (527)
..+|..||=++...+..++.+.. .| -++. ...|+.+.+... ...||+||+|...|. ++| .++
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~ 177 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT---EERYDVVIIDLTDPVGEDNPARLLYTVEF 177 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC---CCCEEEEEEECCCCBSTTCGGGGGSSHHH
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc---CCCccEEEECCCCcccccCcchhccHHHH
Confidence 46899999999999998887753 22 2333 356777655432 235999999987765 222 466
Q ss_pred HHHHHhc
Q 009734 96 LTLVMEH 102 (527)
Q Consensus 96 L~~Lr~~ 102 (527)
++.+++.
T Consensus 178 l~~~~~~ 184 (314)
T 1uir_A 178 YRLVKAH 184 (314)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7777543
No 387
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=29.81 E-value=2.4e+02 Score=27.44 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=57.1
Q ss_pred cCEEEEEecCHHHHHHHHHHH-HhCCCEEEEE-CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALL-RKSSYRVTAV-PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL-~~~Gy~V~~a-~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
+++|.||--=..-...+..+. +..+++++.+ ....+..+.+...- ..+.++.| ++.+-.. +++
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~-----------~~~~l~~---~~~ 72 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN-----------YKDMIDT---ENI 72 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC-----------HHHHHTT---SCC
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC-----------HHHHhcC---CCC
Confidence 479999987555444555554 3457886653 33333333333221 12223322 1222221 133
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 109 PVIilSa--~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
-+|+++. ....+.+..+++.|..=++-||+. .++...+++.+
T Consensus 73 D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 73 DAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred CEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 3444433 335678889999998888899975 66666555544
No 388
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=29.69 E-value=1.7e+02 Score=27.38 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||.+..+. +.. +.++.+.... +|-||+--. ..+ -+.++.+.. ..+|||++...
T Consensus 34 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~--~~~-~~~~~~l~~----~~iPvV~~~~~ 104 (289)
T 2fep_A 34 LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQ--VDGIVFMGG--NIT-DEHVAEFKR----SPVPIVLAASV 104 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCS--CCC-HHHHHHHHH----SSSCEEEESCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecC--CCC-HHHHHHHHh----cCCCEEEEccc
Confidence 34455666778899876643 222 3455555444 898877421 122 345666643 36899988653
No 389
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=29.59 E-value=1.3e+02 Score=27.58 Aligned_cols=69 Identities=13% Similarity=0.245 Sum_probs=46.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHcC------------C-CCceEEEEeCCCCCCCHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VT-AVPDGLKAWEVLKGR------------P-RNIDLILTEVDLPSISGFA 94 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~-~a~dg~eALe~L~~~------------~-~~pDLVLlDl~MP~mDGle 94 (527)
..+|..||-++...+..+..++..|+. +. ...+..+.+..+... . ..||+|++|...+. -..
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHH
Confidence 469999999999999999999887762 43 356777766544221 0 24999999965432 234
Q ss_pred HHHHHHh
Q 009734 95 LLTLVME 101 (527)
Q Consensus 95 lL~~Lr~ 101 (527)
+++.+..
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 390
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.51 E-value=1.4e+02 Score=28.76 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
.+...+...+++.||.+..+. +.. +.++.+.... +|-||+--. ..+ -++++.+.. ..+|||++.
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdGiIi~~~--~~~-~~~~~~l~~----~~iPvV~i~ 154 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWR--PSGVIIAGL--EHS-EAARAMLDA----AGIPVVEIM 154 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEECS--CCC-HHHHHHHHH----CSSCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEECC--CCC-HHHHHHHHh----CCCCEEEEe
Confidence 345566777788899877643 233 2445554443 888777321 122 256666654 368999883
No 391
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.46 E-value=1.1e+02 Score=28.01 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+. +.. +.++.+.... +|-||+--..+. ..+.++.+.+ .++|||++...
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~--~~~~~~~~~~----~~iPvV~~~~~ 91 (272)
T 3o74_A 21 AKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPP--EDDSYRELQD----KGLPVIAIDRR 91 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCS--SCCHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccc--cHHHHHHHHH----cCCCEEEEccC
Confidence 4445566677899877643 222 3445554444 888887443322 1345556644 36899887654
No 392
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=29.39 E-value=4e+02 Score=25.79 Aligned_cols=63 Identities=27% Similarity=0.208 Sum_probs=36.4
Q ss_pred hcCcCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHcCCCCceEEEEeCC-CCCCCH
Q 009734 28 QRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DGL----KAWEVLKGRPRNIDLILTEVD-LPSISG 92 (527)
Q Consensus 28 ~~~~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~---dg~----eALe~L~~~~~~pDLVLlDl~-MP~mDG 92 (527)
.....+|+++|-|. .....+..+.+..|+.+..+. ++. .+++.+... .||+||+|.- ..+.|.
T Consensus 123 ~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~--~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 123 KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDTAGRLQIDE 196 (295)
T ss_dssp HHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH--TCCEEEEECCCCSSCCH
T ss_pred HHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhC--CCCEEEEeCCCCccccH
Confidence 33457999999874 222334445555677666542 332 345554322 3899999974 334454
No 393
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=29.38 E-value=1.6e+02 Score=28.66 Aligned_cols=104 Identities=12% Similarity=0.187 Sum_probs=54.8
Q ss_pred CcCEEEEEecCHHHHH-HHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 30 MALRVLLVEADDSTRQ-IVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~-~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|++||.||---..-.. .+..+++..+++++.+. +...+-+..+... ...++.| -.++ | . ++
T Consensus 1 m~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g--~~~~~~~-------~~~~---l-~----~~ 63 (323)
T 1xea_A 1 MSLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR--VSATCTD-------YRDV---L-Q----YG 63 (323)
T ss_dssp -CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT--CCCCCSS-------TTGG---G-G----GC
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC--CCccccC-------HHHH---h-h----cC
Confidence 3578888887554443 44444444477777444 3333333333221 1111111 1222 2 1 12
Q ss_pred CeEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 108 IPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 108 iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
+-+|+++. ....+.+..+++.|..=|+-||+. .++...+++.+
T Consensus 64 ~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a 110 (323)
T 1xea_A 64 VDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELA 110 (323)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHH
T ss_pred CCEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHH
Confidence 33444433 335677778999999889999975 66666555544
No 394
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=29.36 E-value=3e+02 Score=27.73 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=57.5
Q ss_pred cCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLV-DDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.++++++ .+++..++.+..++... -.|..+. ...+...++.. -|+||++- .|+. ++. ....
T Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~~~-~~v~l~~~l~~~~~~~l~~~----ad~vv~~S-----Gg~~-~EA-----~a~g 320 (403)
T 3ot5_A 257 DTELVYPMHLNPAVREKAMAILGGH-ERIHLIEPLDAIDFHNFLRK----SYLVFTDS-----GGVQ-EEA-----PGMG 320 (403)
T ss_dssp TEEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHH----EEEEEECC-----HHHH-HHG-----GGTT
T ss_pred CceEEEecCCCHHHHHHHHHHhCCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC-----ccHH-HHH-----HHhC
Confidence 3566665 45566666666655432 1233333 33455555543 57888763 1322 222 2247
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|+|++-...+... ..+.| ..+++.+ +.++|...+..++.
T Consensus 321 ~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 321 VPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp CCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 89997633232222 34567 5677776 99999999888764
No 395
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=29.28 E-value=2e+02 Score=24.12 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=45.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH---cCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK---GRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~---~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.++|.||-| +.+.. -++-.|+++..+.+.+++.+.++ .. ..+.||++.-.+-.. --+.+..++.. ..
T Consensus 3 ~mkiaVIgD-~dtv~----GFrLaGi~~~~v~~~ee~~~~~~~l~~~-~digIIlIte~~a~~-i~~~i~~~~~~---~~ 72 (109)
T 2d00_A 3 PVRMAVIAD-PETAQ----GFRLAGLEGYGASSAEEAQSLLETLVER-GGYALVAVDEALLPD-PERAVERLMRG---RD 72 (109)
T ss_dssp CCCEEEEEC-HHHHH----HHHHTTSEEEECSSHHHHHHHHHHHHHH-CCCSEEEEETTTCSC-HHHHHHHHTTC---CC
T ss_pred ccEEEEEeC-HHHHH----HHHHcCCeEEEeCCHHHHHHHHHHHhhC-CCeEEEEEeHHHHHh-hHHHHHHHHhC---CC
Confidence 368899998 44332 34556888888888777655444 22 248899998776552 33445555422 34
Q ss_pred CeEEEEe
Q 009734 108 IPVIMMS 114 (527)
Q Consensus 108 iPVIilS 114 (527)
.|+|+.-
T Consensus 73 ~P~Il~I 79 (109)
T 2d00_A 73 LPVLLPI 79 (109)
T ss_dssp CCEEEEE
T ss_pred CeEEEEE
Confidence 6776643
No 396
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=29.03 E-value=90 Score=29.92 Aligned_cols=106 Identities=11% Similarity=0.101 Sum_probs=65.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeCC---------CCCCCHHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEVD---------LPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl~---------MP~mDGlelL~~L 99 (527)
..+++||-+-+ ....++++.+..+-.|.. .-+..+..+.+.. .|++++=.. ..+.-|+-+++.+
T Consensus 188 ~~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAm 262 (342)
T 2iuy_A 188 GRRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAA 262 (342)
T ss_dssp TCCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHH
T ss_pred CcEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHH
Confidence 57888887754 334444444443333433 3455666677764 578776443 1344467788877
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHc--CCCEEEeCCCCHHHHHHHHHHHH
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMR--GAADYLVKPVRRNELRNLWQHVW 151 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~--GA~DyL~KP~~~eeL~~~L~~v~ 151 (527)
. ..+|||... ... ..+.+.. |..+++..| +.++|...|.+++
T Consensus 263 a-----~G~PvI~s~-~~~---~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 263 V-----SGTPVVGTG-NGC---LAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp H-----TTCCEEECC-TTT---HHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred h-----cCCCEEEcC-CCC---hHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 4 257888533 222 3455556 778889999 9999998888764
No 397
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=28.98 E-value=1.6e+02 Score=28.29 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=54.8
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCC-CCC-HHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHH
Q 009734 51 LRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-SIS-GFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMM 127 (527)
Q Consensus 51 L~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~mD-GlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~ 127 (527)
.++.|..+. .+.+..|+.+.++.. +|+|=+ .| ..- |.++++.|+.. .+++|++..-+- +.+.+.+++.
T Consensus 123 ~~~~gi~~ipGv~TptEi~~A~~~G---ad~vK~---FPa~~~gG~~~lkal~~p--~p~ip~~ptGGI-~~~n~~~~l~ 193 (232)
T 4e38_A 123 CQEIGIDIVPGVNNPSTVEAALEMG---LTTLKF---FPAEASGGISMVKSLVGP--YGDIRLMPTGGI-TPSNIDNYLA 193 (232)
T ss_dssp HHHHTCEEECEECSHHHHHHHHHTT---CCEEEE---CSTTTTTHHHHHHHHHTT--CTTCEEEEBSSC-CTTTHHHHHT
T ss_pred HHHcCCCEEcCCCCHHHHHHHHHcC---CCEEEE---CcCccccCHHHHHHHHHH--hcCCCeeeEcCC-CHHHHHHHHH
Confidence 344466554 378999999998753 788876 66 343 89999999763 478999875554 5788889999
Q ss_pred cCCCEEE
Q 009734 128 RGAADYL 134 (527)
Q Consensus 128 ~GA~DyL 134 (527)
+|+....
T Consensus 194 aGa~~~v 200 (232)
T 4e38_A 194 IPQVLAC 200 (232)
T ss_dssp STTBCCE
T ss_pred CCCeEEE
Confidence 9986544
No 398
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=28.92 E-value=90 Score=29.77 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCEEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCH-------HHHHHHHHhccc--CCCCeEEE
Q 009734 45 QIVTALLRKSSYRVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLPSISG-------FALLTLVMEHEI--CKNIPVIM 112 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-------lelL~~Lr~~~~--~~~iPVIi 112 (527)
..+.+.+++.|..+..+- +..+.++.+.. ..|+|++=-.-|+..| ++-+++||+... ..+++| .
T Consensus 96 ~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~---~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I-~ 171 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILNPETPVEAMKYYIH---KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEI-E 171 (231)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG---GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEE-E
T ss_pred HHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh---cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceE-E
Confidence 455566677788755532 33444443332 3788876444565554 455566665421 124554 4
Q ss_pred EecCCCHHHHHHHHHcCCCEEEeC
Q 009734 113 MSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 113 lSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+.+--..+.+..+.++||+-++.=
T Consensus 172 VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 172 VDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp EESCCSTTTHHHHHHHTCCEEEEC
T ss_pred EECCcCHHHHHHHHHcCCCEEEEc
Confidence 565566788889999999999876
No 399
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.91 E-value=1.1e+02 Score=30.41 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=47.8
Q ss_pred ceEEEE-eCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 78 IDLILT-EVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 78 pDLVLl-Dl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
.|.|++ |=++--..| -+.++++++.. +..+|.+ ..++.+.+.+++.+|++-.+...+++++|+..++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~--~~~~IeV--Ev~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLD--SNKVVEV--EVTNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHC--TTSCEEE--EESSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhC--CCCcEEE--EeCCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 566666 322222222 35667776643 5678776 345678899999999999999999999999888765
No 400
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=28.89 E-value=2.1e+02 Score=28.82 Aligned_cols=40 Identities=3% Similarity=0.000 Sum_probs=32.1
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
++++.+|++.- +++|||+--+-.+.+.+.+++. ||+...+
T Consensus 185 ~~~i~~ik~~~--~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 185 HDWVHRLKGDF--PQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHHHHHHhC--CCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 67888887642 4799998888788999999998 9887754
No 401
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=28.88 E-value=1e+02 Score=29.82 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=50.7
Q ss_pred EEEEEec-CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccC-CC
Q 009734 33 RVLLVEA-DDST---RQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEIC-KN 107 (527)
Q Consensus 33 rVLLVDD-D~~~---r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~-~~ 107 (527)
+|+||-. .+.. .+.+...|+..|+++. . ..+|+||+= |.||. +++.++..... .+
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~--~~~D~vv~l----GGDGT-~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------D--VEPEIVISI----GGDGT-FLSAFHQYEERLDE 61 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------S--SSCSEEEEE----ESHHH-HHHHHHHTGGGTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------C--CCCCEEEEE----cCcHH-HHHHHHHHhhcCCC
Confidence 5666543 2322 3445666888888872 1 238988873 67773 33333332211 37
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+||+-+.. |-.+||. .+.++++..++..++..
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 89987742 5556665 45567777777777654
No 402
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=28.82 E-value=4.2e+02 Score=25.87 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=68.1
Q ss_pred cCEEEEEecC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHH
Q 009734 31 ALRVLLVEAD----DSTRQIVTALLRKSSY--RVTAVP-----DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD----~~~r~~L~~lL~~~Gy--~V~~a~-----dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~L 99 (527)
..+++||-+. +.....+..+.+..+. .|.... +..+..+++.. .|++++--.. +.-|+-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~~-E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSIR-EGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCSS-CSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCCc-CCCccHHHHHH
Confidence 5788888876 3445566666655443 344432 23456666654 5788774332 33467777777
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
. ..+|||... . ....+.+..|..+++.. +.++|...|..++..
T Consensus 337 a-----~G~PvI~~~-~---~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~ 379 (416)
T 2x6q_A 337 W-----KGKPVIGRA-V---GGIKFQIVDGETGFLVR--DANEAVEVVLYLLKH 379 (416)
T ss_dssp H-----TTCCEEEES-C---HHHHHHCCBTTTEEEES--SHHHHHHHHHHHHHC
T ss_pred H-----cCCCEEEcc-C---CCChhheecCCCeEEEC--CHHHHHHHHHHHHhC
Confidence 4 267888633 2 33445666788899997 999999999888753
No 403
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=28.81 E-value=92 Score=30.08 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHcCCCCceEEEEeCCCCCC---CHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 66 KAWEVLKGRPRNIDLILTEVDLPSI---SGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlDl~MP~m---DGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
++++.+.+.. .|+|.+-.. -++ +.+++++++|+ .++|||+|+.... .+..|++.||+-
T Consensus 24 ~~~~~l~~~G--aD~ielG~S-~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n------~i~~G~dg~iiP 84 (240)
T 1viz_A 24 EQLEILCESG--TDAVIIGGS-DGVTEDNVLRMMSKVRR----FLVPCVLEVSAIE------AIVPGFDLYFIP 84 (240)
T ss_dssp HHHHHHHTSC--CSEEEECC-----CHHHHHHHHHHHTT----SSSCEEEECSCGG------GCCSCCSEEEEE
T ss_pred HHHHHHHHcC--CCEEEECCC-CCCCHHHHHHHHHHhhC----cCCCEEEecCccc------cccCCCCEEEEc
Confidence 3444554433 677777652 122 25666777754 3799999998731 227899999976
No 404
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=28.75 E-value=82 Score=30.53 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=55.1
Q ss_pred CEEEEEecC-----HHHHHHHHHHHHhCCCEEEEECCHHHH----------HHHHHcCCCCceEEEEeCCCCCCCH--HH
Q 009734 32 LRVLLVEAD-----DSTRQIVTALLRKSSYRVTAVPDGLKA----------WEVLKGRPRNIDLILTEVDLPSISG--FA 94 (527)
Q Consensus 32 lrVLLVDDD-----~~~r~~L~~lL~~~Gy~V~~a~dg~eA----------Le~L~~~~~~pDLVLlDl~MP~mDG--le 94 (527)
.+|+||-.. ......+...|++.|++|.......+. .+.+.. .+|+||+= |.|| ++
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vi~~----GGDGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQ---QADLAVVV----GGDGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHH---HCSEEEEC----SCHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhccc---CCCEEEEE----cCcHHHHH
Confidence 578777542 123455777788889998765433222 112221 27988872 7777 34
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
+++.+.. .++|++-+- .|-.+||.. +.+.++..+++.++..
T Consensus 79 a~~~~~~----~~~P~lGI~-------------~Gt~gfla~-~~~~~~~~al~~i~~g 119 (292)
T 2an1_A 79 AARTLAR----YDINVIGIN-------------RGNLGFLTD-LDPDNALQQLSDVLEG 119 (292)
T ss_dssp HHHHHTT----SSCEEEEBC-------------SSSCCSSCC-BCTTSHHHHHHHHHTT
T ss_pred HHHHhhc----CCCCEEEEE-------------CCCcccCCc-CCHHHHHHHHHHHHcC
Confidence 4444422 257887653 355666654 3455666667766544
No 405
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=28.64 E-value=3e+02 Score=27.48 Aligned_cols=66 Identities=14% Similarity=-0.019 Sum_probs=44.8
Q ss_pred EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEE
Q 009734 58 VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADY 133 (527)
Q Consensus 58 V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~Dy 133 (527)
.+.+.+.+++.+.++.. +|+|.+|- | +--++-+.++.. .++ ..|..|+--+.+.+.+....|++.|
T Consensus 213 eVEvdtlde~~eAl~aG---aD~I~LDn-~---~~~~l~~av~~i--~~~-v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAHG---ARSVLLDN-F---TLDMMRDAVRVT--EGR-AVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHTT---CEEEEEES-C---CHHHHHHHHHHH--TTS-EEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHcC---CCEEEECC-C---CHHHHHHHHHHh--CCC-CeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 34588999998888753 79999994 3 333333333322 123 4566788888888888889999655
No 406
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=28.60 E-value=1.6e+02 Score=26.63 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=52.5
Q ss_pred cCEEEEEec--CHHHHHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHcCCCCceEE-EEeCCC---CCCCHH-HHHHHH
Q 009734 31 ALRVLLVEA--DDSTRQIVTALLRKSSYRVTA-VP---DGLKAWEVLKGRPRNIDLI-LTEVDL---PSISGF-ALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDD--D~~~r~~L~~lL~~~Gy~V~~-a~---dg~eALe~L~~~~~~pDLV-LlDl~M---P~mDGl-elL~~L 99 (527)
....+.|.. .......+.+.+++.|..+.. +. +..+.++.+.... .|+| +.=... ++.+.. +.++++
T Consensus 77 Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g--~d~v~~~~~~~~~~~g~~~~~~~i~~~ 154 (207)
T 3ajx_A 77 GADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALG--AKFVEMHAGLDEQAKPGFDLNGLLAAG 154 (207)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTT--CSEEEEECCHHHHTSTTCCTHHHHHHH
T ss_pred CCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhC--CCEEEEEecccccccCCCchHHHHHHh
Confidence 344555433 223344455555555766533 32 5556444444333 7888 541111 232222 445554
Q ss_pred HhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 100 MEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 100 r~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+.. ++||++.-+-. .+.+.+++++||+.+++
T Consensus 155 ~~~----~~pi~v~GGI~-~~~~~~~~~aGad~vvv 185 (207)
T 3ajx_A 155 EKA----RVPFSVAGGVK-VATIPAVQKAGAEVAVA 185 (207)
T ss_dssp HHH----TSCEEEESSCC-GGGHHHHHHTTCSEEEE
T ss_pred hCC----CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 332 56887665544 67888899999998863
No 407
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=28.58 E-value=1.8e+02 Score=26.78 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 009734 44 RQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa 115 (527)
...+...++..||.+..+. +.. +.++.+... .+|-||+--. ..+. .+.++.+++ ..+|||++..
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~i~~ 90 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVR--GTKILLINPT--DSDAVGNAVKMANQ----ANIPVITLDR 90 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTT--TEEEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHc--CCCEEEEeCC--ChHHHHHHHHHHHH----CCCcEEEecC
Confidence 3445666777899877643 322 234444443 3998887422 2222 245666654 3689998864
No 408
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=28.55 E-value=2.2e+02 Score=26.53 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHcCCCCceEEEEeC----CCCC-CCHHHHHHHHHhcccCCCCeEEEEecCC
Q 009734 45 QIVTALLRKSSYRVTA--VPDGLKAWEVLKGRPRNIDLILTEV----DLPS-ISGFALLTLVMEHEICKNIPVIMMSSQD 117 (527)
Q Consensus 45 ~~L~~lL~~~Gy~V~~--a~dg~eALe~L~~~~~~pDLVLlDl----~MP~-mDGlelL~~Lr~~~~~~~iPVIilSa~~ 117 (527)
...-..|+..|+.+.. +..|...+..|..-+ ||.|=+|- .+.. .....+++.|.......++.|| ..+..
T Consensus 146 ~~~l~~L~~~G~~ialDdfG~g~s~l~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l~~~vi-aeGVE 222 (250)
T 4f3h_A 146 QQFLASVSAMGCKVGLEQFGSGLDSFQLLAHFQ--PAFLKLDRSITGDIASARESQEKIREITSRAQPTGILTV-AEFVA 222 (250)
T ss_dssp HHHHHHHHTTTCEEEEEEETSSTHHHHHHTTSC--CSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHHTCEEE-ECCCC
T ss_pred HHHHHHHHHCCCEEEEeCCCCCchHHHHHhhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCEEE-EeccC
Confidence 3444566788997654 788888999998755 99999993 2222 2345555555433222245554 57778
Q ss_pred CHHHHHHHHHcCCCEE
Q 009734 118 SVSTVYKCMMRGAADY 133 (527)
Q Consensus 118 d~~~~~~al~~GA~Dy 133 (527)
+.+....+..+|++.+
T Consensus 223 t~~~~~~l~~~G~~~~ 238 (250)
T 4f3h_A 223 DAQSMSSFFTAGVDYV 238 (250)
T ss_dssp CHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHcCCCEE
Confidence 8888888899997643
No 409
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=28.46 E-value=1.3e+02 Score=28.75 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=44.4
Q ss_pred hhhcCcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcC----------CCCceEEEEeCCCCCCCHHHH
Q 009734 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGR----------PRNIDLILTEVDLPSISGFAL 95 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~----------~~~pDLVLlDl~MP~mDGlel 95 (527)
||..|+++|.||--.-.+...+...|...|++|..+.-..+.++.+... ....|+||+-+ |...-.++
T Consensus 6 ~~~~mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av--~~~~~~~v 83 (286)
T 3c24_A 6 KNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLAL--PDNIIEKV 83 (286)
T ss_dssp CCSCCCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECS--CHHHHHHH
T ss_pred cccccCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcC--CchHHHHH
Confidence 4445567888887756777777777777888887765333333333210 01368888755 33224566
Q ss_pred HHHHHh
Q 009734 96 LTLVME 101 (527)
Q Consensus 96 L~~Lr~ 101 (527)
++.|..
T Consensus 84 ~~~l~~ 89 (286)
T 3c24_A 84 AEDIVP 89 (286)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 666643
No 410
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=28.44 E-value=1.9e+02 Score=29.44 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=60.5
Q ss_pred cCEEEEEecCH---HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 31 ALRVLLVEADD---STRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 31 ~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
++||.||---. .-...+..+....+++++. +. +.+.+-+..+......+-+.. |--+++..-....
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~-------~~~~ll~~~~~~~- 108 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYS-------DFKEMAIREAKLK- 108 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCS-------CHHHHHHHHHHCT-
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccC-------CHHHHHhcccccC-
Confidence 47999999775 3334444444444577764 43 444444443321100001111 2234444321111
Q ss_pred CCCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVWR 152 (527)
Q Consensus 105 ~~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~r 152 (527)
+++=+|++. .....+.+..|+++|..=|+-||+ +.++...+++.+-+
T Consensus 109 -~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 109 -NGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp -TCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -CCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 233333333 334688899999999999999996 56677766665543
No 411
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=28.44 E-value=1.2e+02 Score=29.62 Aligned_cols=95 Identities=11% Similarity=0.094 Sum_probs=53.8
Q ss_pred EEEEecCHHHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCH---------HHHHHHHHh
Q 009734 34 VLLVEADDSTRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISG---------FALLTLVME 101 (527)
Q Consensus 34 VLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDG---------lelL~~Lr~ 101 (527)
|++.|=.......+...+++.|+.++. +. +..+-++.+......|+ ++. .+.+.-| .++++++++
T Consensus 123 viv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi--y~v-s~~G~TG~~~~~~~~~~~~v~~vr~ 199 (271)
T 1ujp_A 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV--YAV-SVTGVTGMRERLPEEVKDLVRRIKA 199 (271)
T ss_dssp EECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE--EEE-CC------------CCHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE--EEE-ecCcccCCCCCCCccHHHHHHHHHh
Confidence 444444334445555666666765332 32 33343444443332344 333 3343333 478888876
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
. .++||++=.+-.+.+.+.++ .||+..++=
T Consensus 200 ~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 200 R---TALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp T---CCSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred h---cCCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 5 37899877777778888885 999999875
No 412
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=28.38 E-value=2e+02 Score=28.93 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=61.6
Q ss_pred cCEEEEEecCH---HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 31 ALRVLLVEADD---STRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 31 ~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
++||.||---. .-...+..+....+++++. +. +...+-+..+.......-+. .|--+++..-....
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~-------~~~~~ll~~~~~~~- 83 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCY-------ADYLSMFEQEARRA- 83 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBC-------SSHHHHHHHHTTCT-
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceee-------CCHHHHHhcccccC-
Confidence 48999998765 3344444444444578775 43 44555444443220000111 12234444311111
Q ss_pred CCCCeEEEEe--cCCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMS--SQDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 105 ~~~iPVIilS--a~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
+++-+|++. .....+.+..|+++|..=|+-||+. .++...+++.+-+
T Consensus 84 -~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 84 -DGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp -TCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred -CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 223333333 3346788999999999999999984 5677766665543
No 413
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=28.32 E-value=57 Score=29.78 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=47.1
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCCCC--CCHHHHHHHHHhcccCCCCeEEE--EecCCCHHHHHHHHHcCCCEEEeCCC
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDLPS--ISGFALLTLVMEHEICKNIPVIM--MSSQDSVSTVYKCMMRGAADYLVKPV 138 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~MP~--mDGlelL~~Lr~~~~~~~iPVIi--lSa~~d~~~~~~al~~GA~DyL~KP~ 138 (527)
+.+++++.++.....+|+|-. .+|- ..|+++++.||+.. +++||.+ +........+..+.++||+.+++-..
T Consensus 11 ~~~~~~~~~~~~~~~~diie~--G~p~~~~~g~~~i~~ir~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~ 86 (211)
T 3f4w_A 11 TLPEAMVFMDKVVDDVDIIEV--GTPFLIREGVNAIKAIKEKY--PHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGV 86 (211)
T ss_dssp CHHHHHHHHHHHGGGCSEEEE--CHHHHHHHTTHHHHHHHHHC--TTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHHhhcCccEEEe--CcHHHHhccHHHHHHHHHhC--CCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCC
Confidence 455555555432112454332 3343 35788999998752 4678753 33333333488999999998887544
Q ss_pred CH-HHHHHHHHHH
Q 009734 139 RR-NELRNLWQHV 150 (527)
Q Consensus 139 ~~-eeL~~~L~~v 150 (527)
.. +.+...++.+
T Consensus 87 ~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 87 TDVLTIQSCIRAA 99 (211)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHH
Confidence 43 3344444433
No 414
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=28.31 E-value=1.6e+02 Score=28.36 Aligned_cols=77 Identities=12% Similarity=0.268 Sum_probs=44.3
Q ss_pred cCEEEEEecCHHH--------------HHHHHHHHHhCCCEEEEEC--CHHHHH--HHHHcCCCCceEEEE--eCCCCCC
Q 009734 31 ALRVLLVEADDST--------------RQIVTALLRKSSYRVTAVP--DGLKAW--EVLKGRPRNIDLILT--EVDLPSI 90 (527)
Q Consensus 31 ~lrVLLVDDD~~~--------------r~~L~~lL~~~Gy~V~~a~--dg~eAL--e~L~~~~~~pDLVLl--Dl~MP~m 90 (527)
.+||||-.+-.-- ...|.++|+..||+|..+. +....+ +.|.. +|+||. |..+..+
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~----~DvvV~~~~~~~~~l 82 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDR----CDVLVWWGHIAHDEV 82 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHT----CSEEEEECSSCGGGS
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhc----CCEEEEecCCCCCcC
Confidence 4788888763311 1246888999999998865 544332 34542 899997 3444444
Q ss_pred CHHHHHHHHHhcccCCCCeEEEE
Q 009734 91 SGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIil 113 (527)
+-- ....|++- ......+|.+
T Consensus 83 ~~~-~~~al~~~-V~~GgG~vgi 103 (252)
T 1t0b_A 83 KDE-VVERVHRR-VLEGMGLIVL 103 (252)
T ss_dssp CHH-HHHHHHHH-HHTTCEEEEE
T ss_pred CHH-HHHHHHHH-HHcCCCEEEE
Confidence 432 22333222 1135678777
No 415
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=28.27 E-value=4.1e+02 Score=25.93 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=51.1
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHcC--------------CCCceEEEEeCC
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTAVPDGLKAWEVLKGR--------------PRNIDLILTEVD 86 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~--------------~~~pDLVLlDl~ 86 (527)
|+..+..|.++|.||- --.+...+...|...|+ +|..+.--.+.++.+... -...|+||+-+
T Consensus 25 ~~~~~~~~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav- 102 (314)
T 3ggo_A 25 IKILKSLSMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS- 102 (314)
T ss_dssp ----CCCSCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-
T ss_pred CchhhhcCCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-
Confidence 3333344457888887 67888888888888898 887776444333322210 11368999854
Q ss_pred CCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 87 LPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 87 MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
|...-.++++.|... ..++..|+-+++
T Consensus 103 -p~~~~~~vl~~l~~~-l~~~~iv~d~~S 129 (314)
T 3ggo_A 103 -PVRTFREIAKKLSYI-LSEDATVTDQGS 129 (314)
T ss_dssp -CGGGHHHHHHHHHHH-SCTTCEEEECCS
T ss_pred -CHHHHHHHHHHHhhc-cCCCcEEEECCC
Confidence 444456777777543 223444443443
No 416
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=28.22 E-value=2.9e+02 Score=25.65 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=57.4
Q ss_pred cCEEEEEecC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHcCCCCceEEEEeCCCC-C---------CC-H
Q 009734 31 ALRVLLVEAD------DSTRQIVTALLRKSSYRVT-AVPDGLKAWEVLKGRPRNIDLILTEVDLP-S---------IS-G 92 (527)
Q Consensus 31 ~lrVLLVDDD------~~~r~~L~~lL~~~Gy~V~-~a~dg~eALe~L~~~~~~pDLVLlDl~MP-~---------mD-G 92 (527)
....++|.+. ...++.+.. .+..|..+. ++.+..++.. +.... .++|-..-... + .+ -
T Consensus 82 Gad~Vll~~ser~l~~~e~~~~~~~-a~~~Gl~~iv~v~~~~e~~~-~~~~~--~~~i~~~~~~~iGtG~~~~t~~~~~~ 157 (219)
T 2h6r_A 82 GCKGTLINHSEKRMLLADIEAVINK-CKNLGLETIVCTNNINTSKA-VAALS--PDCIAVEPPELIGTGIPVSKANPEVV 157 (219)
T ss_dssp TCCEEEESBTTBCCBHHHHHHHHHH-HHHHTCEEEEEESSSHHHHH-HTTTC--CSEEEECCCC--------------CS
T ss_pred CCCEEEECCccccCCHHHHHHHHHH-HHHCCCeEEEEeCCchHHHH-HHhCC--CCEEEEEeccccccCCCCccCCHHHH
Confidence 3455566542 233333333 345588754 4666666433 33322 56776654332 1 11 1
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
-++++.++... .++||+.-.+-...+.+..+...|++.+|+=
T Consensus 158 ~~~~~~ir~~~--~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVG 199 (219)
T 2h6r_A 158 EGTVRAVKEIN--KDVKVLCGAGISKGEDVKAALDLGAEGVLLA 199 (219)
T ss_dssp HHHHHHHHHHC--TTCEEEECSSCCSHHHHHHHHTTTCCCEEES
T ss_pred HHHHHHHHhcc--CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEc
Confidence 24455555432 3689988888888888888999999999853
No 417
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=28.14 E-value=1.1e+02 Score=28.31 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=41.5
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHcCCCCceEEEEeCCC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTA-VPDGLKAWEVLKGRPRNIDLILTEVDL 87 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~M 87 (527)
..-+|..||-++.+.+..++..+..+..+.. ..+..+.+..+... .||.|+.|...
T Consensus 82 ~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~FD~i~~D~~~ 138 (236)
T 3orh_A 82 PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDG--HFDGILYDTYP 138 (236)
T ss_dssp CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTT--CEEEEEECCCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhccccccc--CCceEEEeeee
Confidence 3458999999999999999988888876655 45666655444433 49999999643
No 418
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=28.03 E-value=1.8e+02 Score=24.78 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=43.8
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYR--VTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
..+|..||-++...+..+..++..|+. +....+..+.+ ......||+|++...+.. ..+++.+.+
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~D~i~~~~~~~~---~~~l~~~~~ 115 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAF---DDVPDNPDVIFIGGGLTA---PGVFAAAWK 115 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGG---GGCCSCCSEEEECC-TTC---TTHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhh---hccCCCCCEEEECCcccH---HHHHHHHHH
Confidence 578999999999999999999887763 54445544332 321134999999876665 445555543
No 419
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=27.97 E-value=1e+02 Score=29.10 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=50.0
Q ss_pred chHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCC-CHHHHHH
Q 009734 22 KWETFLQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSI-SGFALLT 97 (527)
Q Consensus 22 ~~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~m-DGlelL~ 97 (527)
.|-..+.....+|..||-++......+..+...|. .+.. ..+..+... +.. ..+|+|++...+.-+ +-..+++
T Consensus 81 ~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~--~~fD~v~~~~~l~~~~~~~~~l~ 157 (285)
T 4htf_A 81 QTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-HLE--TPVDLILFHAVLEWVADPRSVLQ 157 (285)
T ss_dssp HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-GCS--SCEEEEEEESCGGGCSCHHHHHH
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-hcC--CCceEEEECchhhcccCHHHHHH
Confidence 34444444567999999999999999999987765 2333 445544321 122 349999998655432 4456777
Q ss_pred HHHhc
Q 009734 98 LVMEH 102 (527)
Q Consensus 98 ~Lr~~ 102 (527)
.+...
T Consensus 158 ~~~~~ 162 (285)
T 4htf_A 158 TLWSV 162 (285)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77653
No 420
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=27.78 E-value=71 Score=31.64 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCH--HHHHHHHHHH
Q 009734 77 NIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRR--NELRNLWQHV 150 (527)
Q Consensus 77 ~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~--eeL~~~L~~v 150 (527)
.+|+||+|+ .|. .|...+.+.|... -.+.+.+.+.-|...|++|=|.. .++...++.+
T Consensus 139 ~~DvVLSDM-APn-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~l 198 (269)
T 2px2_A 139 ISDTLLCDI-GES-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESL 198 (269)
T ss_dssp CCSEEEECC-CCC-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHH
T ss_pred CCCEEEeCC-CCC-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHH
Confidence 489999995 555 8888888776542 24666777888877899998886 6665544443
No 421
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.75 E-value=5.3e+02 Score=26.71 Aligned_cols=58 Identities=28% Similarity=0.259 Sum_probs=35.7
Q ss_pred hhhcCcCEEEEEecC---HHHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeC
Q 009734 26 FLQRMALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD---~~~r~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl 85 (527)
++.....+|++++-| +...+.+..+-+..|+.+.... ++ .++++.++.. .+|+||+|.
T Consensus 121 ~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~--~~DvVIIDT 188 (425)
T 2ffh_A 121 YYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDT 188 (425)
T ss_dssp HHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred HHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 344456799999987 3444445554455677777653 22 2345554333 389999996
No 422
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=27.68 E-value=3e+02 Score=24.48 Aligned_cols=30 Identities=13% Similarity=0.326 Sum_probs=22.3
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a 61 (527)
|+|||.--.-.+...+...|.+.|++|+.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 377888877778777777777777776653
No 423
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=27.55 E-value=1.1e+02 Score=32.41 Aligned_cols=69 Identities=10% Similarity=-0.114 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCC-CeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 62 PDGLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKN-IPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 62 ~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~-iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+..+.++.+.+.. +++|.+|..-....+ ++.++.|++.. ++ +||| +..-.+.+.+..+.++||+...+
T Consensus 241 ~~~~e~~~~l~e~g--v~~l~Vd~~~g~~~~~~~~i~~lk~~~--~~~~~Vi-~G~V~t~~~a~~l~~aGad~I~V 311 (503)
T 1me8_A 241 RDFRERVPALVEAG--ADVLCIDSSDGFSEWQKITIGWIREKY--GDKVKVG-AGNIVDGEGFRYLADAGADFIKI 311 (503)
T ss_dssp SSHHHHHHHHHHHT--CSEEEECCSCCCSHHHHHHHHHHHHHH--GGGSCEE-EEEECSHHHHHHHHHHTCSEEEE
T ss_pred hhHHHHHHHHHhhh--ccceEEecccCcccchhhHHHHHHHhC--CCCceEe-eccccCHHHHHHHHHhCCCeEEe
Confidence 45556666665544 789999876443333 56677776653 34 6777 34455678888999999977654
No 424
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.45 E-value=1.9e+02 Score=26.90 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa 115 (527)
+...+...+++.||.+..+. +.. +.++.+.... +|-||+--. ..+. .+.++.+.+ ..+|||++..
T Consensus 19 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~--~~~~~~~~~~~~~~----~~iPvV~~~~ 90 (283)
T 2ioy_A 19 LKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQK--VDVLLINPV--DSDAVVTAIKEANS----KNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCS--STTTTHHHHHHHHH----TTCCEEEESS
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcC--CCEEEEeCC--chhhhHHHHHHHHH----CCCeEEEecC
Confidence 34445666777899877653 232 2344444443 898887321 2222 245666644 3689998754
No 425
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=27.28 E-value=3.1e+02 Score=28.06 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=62.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHH---cCCCCceEEEEeCCCCCCCHHHHHHHHHhccc
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLK---GRPRNIDLILTEVDLPSISGFALLTLVMEHEI 104 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~---~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~ 104 (527)
.++||.||-=-..-...+..+....+++++.+. +...+-+..+ ... -++.-+.+- ...| ++.|-+.
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g-~~~~~~~~~--~~~~----~~~ll~~-- 89 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNG-KKPAKVFGN--GNDD----YKNMLKD-- 89 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTT-CCCCEEECS--STTT----HHHHTTC--
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcC-CCCCceecc--CCCC----HHHHhcC--
Confidence 358999998766655566555554578876543 3333322221 111 012222210 0112 2333222
Q ss_pred CCCCeEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHHHH
Q 009734 105 CKNIPVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHVWR 152 (527)
Q Consensus 105 ~~~iPVIilSa--~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v~r 152 (527)
+++-+|+++. ....+.+.+|+++|..=|+-||+. .++...+++.+-+
T Consensus 90 -~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 90 -KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp -TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred -CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2344444443 345788889999999999999985 6777666665533
No 426
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=27.27 E-value=1.9e+02 Score=30.60 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 64 GLKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 64 g~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
..+.++.+.+.. +|+|.+|........ +++++.+++.- +++|||+-. ....+.+..+.++||+.+.+
T Consensus 256 ~~~~a~~~~~aG--~d~v~i~~~~G~~~~~~~~i~~i~~~~--~~~pvi~~~-v~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQAG--VDVIVLDSSQGNSVYQIAMVHYIKQKY--PHLQVIGGN-VVTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHTT--CSEEEECCSCCCSHHHHHHHHHHHHHC--TTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHcC--CCEEEeeccCCcchhHHHHHHHHHHhC--CCCceEecc-cchHHHHHHHHHcCCCEEEE
Confidence 344444444444 899999887644433 58889998752 578988632 25678889999999988766
No 427
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU genomics, PSI-2, protein structure initiative; 2.29A {Lactobacillus brevis atcc 367}
Probab=27.27 E-value=3.5e+02 Score=26.59 Aligned_cols=95 Identities=14% Similarity=0.258 Sum_probs=57.9
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCCEEEEEC--CHHH----HHHHHHcCCCCceEEEE-eCCCCCCCH--HHHHHHHHhc
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSYRVTAVP--DGLK----AWEVLKGRPRNIDLILT-EVDLPSISG--FALLTLVMEH 102 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~--dg~e----ALe~L~~~~~~pDLVLl-Dl~MP~mDG--lelL~~Lr~~ 102 (527)
-.|++.+|-.....+|.. +. .+..+.... +..+ .++.++.. -+++++ |..+|...| .++++.+++.
T Consensus 42 aDvI~~edtr~~~~lL~~-~~-~~~~~i~~~~~~~~~~~~~li~~l~~G---~~Va~lsdaGdP~i~~~g~~lv~~~~~~ 116 (296)
T 3kwp_A 42 VDLIAAEDTRNTQKLLNH-FE-ITTKQISFHEHNTQERIPQLIAKLKQG---MQIAQVSDAGMPSISDPGHELVNACIDA 116 (296)
T ss_dssp SSEEEESCHHHHHHHHHH-TT-CCCEEEECSTTTHHHHHHHHHHHHHTT---CEEEEECSSBCTTSSHHHHHHHHHHHHT
T ss_pred hhhhhhhccccHHHHhhh-ee-eeeeeeehhhcchhhHhHHHHHHHhcC---ceEEEeccCCCCCCCCCchHHHHHHHHc
Confidence 467888775444443332 11 123444433 2223 33444433 378888 899999875 6777777653
Q ss_pred ccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 103 EICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 103 ~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
+++|.++-+-.....+..+..+-.++|..
T Consensus 117 ----gi~v~viPGiSA~~aA~a~~Glp~~~f~f 145 (296)
T 3kwp_A 117 ----HIPVVPLPGANAGLTALIASGLAPQPFYF 145 (296)
T ss_dssp ----TCCEEECCCCCHHHHHHHHHSSCCSSEEE
T ss_pred ----CCCeeeCCCcccchHHHHhccCCCCceeE
Confidence 67899988887777766666655666654
No 428
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=27.26 E-value=87 Score=32.38 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=58.2
Q ss_pred cCEEEEEec----CHHHHHHHHHHHHh-CCCEEEEE-C-CHHHHHHHHHcCCCCce-EEEEeCCCCCCCHHHHHHHHHhc
Q 009734 31 ALRVLLVEA----DDSTRQIVTALLRK-SSYRVTAV-P-DGLKAWEVLKGRPRNID-LILTEVDLPSISGFALLTLVMEH 102 (527)
Q Consensus 31 ~lrVLLVDD----D~~~r~~L~~lL~~-~Gy~V~~a-~-dg~eALe~L~~~~~~pD-LVLlDl~MP~mDGlelL~~Lr~~ 102 (527)
++||.||-- -..-...+..+.+. .+++++.+ . +...+-+..+... .++ .+..| ++.|-..
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g-~~~~~~~~~-----------~~~ll~~ 87 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLK-LSNATAFPT-----------LESFASS 87 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTT-CTTCEEESS-----------HHHHHHC
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcC-CCcceeeCC-----------HHHHhcC
Confidence 489999986 33233344444444 57887654 3 3333333333322 111 12222 2233222
Q ss_pred ccCCCCeEEEEecC--CCHHHHHHHHHcC------CCEEEeCCCC--HHHHHHHHHHHH
Q 009734 103 EICKNIPVIMMSSQ--DSVSTVYKCMMRG------AADYLVKPVR--RNELRNLWQHVW 151 (527)
Q Consensus 103 ~~~~~iPVIilSa~--~d~~~~~~al~~G------A~DyL~KP~~--~eeL~~~L~~v~ 151 (527)
+++-+|+++.. ...+.+..|+++| ..=|+-||+. .++...+++.+-
T Consensus 88 ---~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~ 143 (438)
T 3btv_A 88 ---STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAA 143 (438)
T ss_dssp ---SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred ---CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHH
Confidence 23444444433 3577888999999 8889999975 677766666543
No 429
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=27.22 E-value=1.2e+02 Score=28.09 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=37.5
Q ss_pred HHHHHHcCCCCceEEEEeC----CCC-CCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHH
Q 009734 67 AWEVLKGRPRNIDLILTEV----DLP-SISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRN 141 (527)
Q Consensus 67 ALe~L~~~~~~pDLVLlDl----~MP-~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~e 141 (527)
..++++... +|+||.=. ..| .-||+.+.+.--. .+||++ |..+....+.+++-.+- +|-..-.+..
T Consensus 90 I~d~I~~ge--IdlVInt~dPl~~~~h~~D~~~IRR~A~~----~~IP~~--TnlatA~A~v~ail~~~-~~~~~~~d~~ 160 (178)
T 1vmd_A 90 IGAMIAEGK--IDVLIFFWDPLEPQAHDVDVKALIRIATV----YNIPVA--ITRSTADFLISSPLMND-VYEKIQIDYE 160 (178)
T ss_dssp HHHHHHTTS--CCEEEEECCSSSCCTTSCCHHHHHHHHHH----TTCCEE--SSHHHHHHHHHSGGGGS-CEEEEEECHH
T ss_pred HHHHHHCCC--ccEEEEccCccCCCcccccHHHHHHHHHH----cCCCEE--eCHHHHHHHHHHHhccc-ccccCCCCHH
Confidence 456666544 88887733 356 6788776665433 367775 65555555555544443 2433333444
Q ss_pred H
Q 009734 142 E 142 (527)
Q Consensus 142 e 142 (527)
+
T Consensus 161 ~ 161 (178)
T 1vmd_A 161 E 161 (178)
T ss_dssp H
T ss_pred H
Confidence 3
No 430
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=27.08 E-value=1.8e+02 Score=26.68 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=51.5
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCC--CCceEEEEeCCCCCCCHHHHHHHHHhcccC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRP--RNIDLILTEVDLPSISGFALLTLVMEHEIC 105 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~--~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~ 105 (527)
..+|..||-++......+..++..|+ .+.. ..+..+.+..+.... ..||+||+|... .+-..+++.+... .
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~--L 172 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLNL--L 172 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHHT--E
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHHH--c
Confidence 35899999999999999999887776 2443 567777766654311 249999999652 2234555555432 1
Q ss_pred CCCeEEEEe
Q 009734 106 KNIPVIMMS 114 (527)
Q Consensus 106 ~~iPVIilS 114 (527)
+.--+|++.
T Consensus 173 kpgG~lv~~ 181 (232)
T 3cbg_A 173 RRGGLMVID 181 (232)
T ss_dssp EEEEEEEEE
T ss_pred CCCeEEEEe
Confidence 223455554
No 431
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=27.03 E-value=99 Score=28.90 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
+...+...+++.||.+..+. +.. +.++.+.... +|.||+--..+ ..++++.+.. ..+|||++...
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~---~~~~~~~~~~----~~iPvV~~~~~ 96 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG---EHDYLRTELP----KTFPIVAVNRE 96 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS---CCHHHHHSSC----TTSCEEEESSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC---ChHHHHHhhc----cCCCEEEEecc
Confidence 34456666778899877753 222 2455555444 89888743322 2245555532 47899988754
Q ss_pred C
Q 009734 117 D 117 (527)
Q Consensus 117 ~ 117 (527)
.
T Consensus 97 ~ 97 (291)
T 3egc_A 97 L 97 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 432
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.99 E-value=3e+02 Score=24.10 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=60.7
Q ss_pred CEEEEEe--cCHHHHHHHHHHHHhCCCEEEEEC-CHHHHHHHHHcCCCCceEEEEeCCCCCCC--HHHHHHHHHhcccCC
Q 009734 32 LRVLLVE--ADDSTRQIVTALLRKSSYRVTAVP-DGLKAWEVLKGRPRNIDLILTEVDLPSIS--GFALLTLVMEHEICK 106 (527)
Q Consensus 32 lrVLLVD--DD~~~r~~L~~lL~~~Gy~V~~a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mD--GlelL~~Lr~~~~~~ 106 (527)
-+|+++- ........+...|...|..+.... ++.+....+.... .=|+||+ +-..|.. -+++++.+++ .
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~-iS~sG~t~~~~~~~~~ak~----~ 113 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIG-VSVWRYLRDTVAALAGAAE----R 113 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEE-ECCSSCCHHHHHHHHHHHH----T
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEE-EeCCCCCHHHHHHHHHHHH----C
Confidence 4777775 466677778888888999988887 6666655554332 2366555 5555543 3555666554 3
Q ss_pred CCeEEEEecCCCHHHHHHHHHcCCCEEEeCCC
Q 009734 107 NIPVIMMSSQDSVSTVYKCMMRGAADYLVKPV 138 (527)
Q Consensus 107 ~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~ 138 (527)
+++||.+|......... -++..|.=|.
T Consensus 114 g~~vi~IT~~~~s~l~~-----~ad~~l~~~~ 140 (187)
T 3sho_A 114 GVPTMALTDSSVSPPAR-----IADHVLVAAT 140 (187)
T ss_dssp TCCEEEEESCTTSHHHH-----HCSEEEECCC
T ss_pred CCCEEEEeCCCCCcchh-----hCcEEEEecC
Confidence 68999999876543322 2555555444
No 433
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=26.94 E-value=4e+02 Score=28.08 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=61.0
Q ss_pred cCEEEEEecC----HHHHHHHHHHHHhC--C-CEEE--EECCHHHHHHHHHcCCCCceEEEEeCCCCC------------
Q 009734 31 ALRVLLVEAD----DSTRQIVTALLRKS--S-YRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDLPS------------ 89 (527)
Q Consensus 31 ~lrVLLVDDD----~~~r~~L~~lL~~~--G-y~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~MP~------------ 89 (527)
..++++|+-. ......+ ..|+.. + ..|. .+.+.+.|..+++.. .|+|.+-+ =|+
T Consensus 254 gv~~l~Vd~~~g~~~~~~~~i-~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aG---ad~I~Vg~-~~g~~~~~r~~~~~g 328 (503)
T 1me8_A 254 GADVLCIDSSDGFSEWQKITI-GWIREKYGDKVKVGAGNIVDGEGFRYLADAG---ADFIKIGI-GGGSICITREQKGIG 328 (503)
T ss_dssp TCSEEEECCSCCCSHHHHHHH-HHHHHHHGGGSCEEEEEECSHHHHHHHHHHT---CSEEEECS-SCSTTCCSTTTTCCC
T ss_pred hccceEEecccCcccchhhHH-HHHHHhCCCCceEeeccccCHHHHHHHHHhC---CCeEEecc-cCCcCcccccccCCC
Confidence 5778888532 2233333 333322 3 3333 477888888877654 68888733 121
Q ss_pred CCHHHHHHHHHhccc------CCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 90 ISGFALLTLVMEHEI------CKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 90 mDGlelL~~Lr~~~~------~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
..-+.++..+.+... ...+|||.=.+-.....+.+|+.+||+...+-
T Consensus 329 ~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG 381 (503)
T 1me8_A 329 RGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG 381 (503)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 223445544432210 01589987778888999999999999987754
No 434
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=26.84 E-value=76 Score=28.60 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=47.0
Q ss_pred CcCEEEEEecCHHH----------HHHHHHHHHhCCCEEEEE-----------------C---CHHHHHHHHHcC--CCC
Q 009734 30 MALRVLLVEADDST----------RQIVTALLRKSSYRVTAV-----------------P---DGLKAWEVLKGR--PRN 77 (527)
Q Consensus 30 ~~lrVLLVDDD~~~----------r~~L~~lL~~~Gy~V~~a-----------------~---dg~eALe~L~~~--~~~ 77 (527)
..++|+++-|.-.. ...|...|...++.+..+ - ...+.+..+... ...
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~~ 83 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTHN 83 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhccC
Confidence 35788888887654 456777887767765432 1 123333333210 123
Q ss_pred ceEEEEeCCCCCC--------C-HHHHHHHHHhcccCCCCeEEEEecC
Q 009734 78 IDLILTEVDLPSI--------S-GFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 78 pDLVLlDl~MP~m--------D-GlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
||+|++.+..-+. . =-.+++.|++. .+..+||+++-.
T Consensus 84 pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~--~p~~~ii~~~~~ 129 (215)
T 2vpt_A 84 PDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTV--KPNVTLFVADYY 129 (215)
T ss_dssp CSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHH--CTTCEEEEECCC
T ss_pred CCEEEEEccccccCCCCChhHHHHHHHHHHHHHh--CCCCEEEEEeCC
Confidence 8999986632211 1 12456666654 356778777643
No 435
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=26.84 E-value=1.2e+02 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=23.0
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEEC
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
++++|||+..-...+. +...+++.||+|+.+.
T Consensus 18 ~~~~ili~g~g~~g~~-~~~a~~~~G~~v~~v~ 49 (433)
T 2dwc_A 18 SAQKILLLGSGELGKE-IAIEAQRLGVEVVAVD 49 (433)
T ss_dssp TCCEEEEESCSHHHHH-HHHHHHHTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHH-HHHHHHHCCCEEEEEE
Confidence 4579999988765554 4555667899987754
No 436
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=26.82 E-value=2.3e+02 Score=26.69 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...+...+++.||.+..+. +.. +.++.+.... +|.||+--..+.. -.++++++++ ..+|||++..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~-~~~~~~~~~~----~~iPvV~~~~ 91 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRG--VDVLVIIPYNGQV-LSNVVKEAKQ----EGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEECSSTTS-CHHHHHHHHT----TTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhh-hHHHHHHHHH----CCCeEEEECC
Confidence 455667777788899877643 222 3445554444 8888875433321 1356666644 3689988765
Q ss_pred C
Q 009734 116 Q 116 (527)
Q Consensus 116 ~ 116 (527)
.
T Consensus 92 ~ 92 (313)
T 3m9w_A 92 M 92 (313)
T ss_dssp C
T ss_pred c
Confidence 4
No 437
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=26.74 E-value=66 Score=30.94 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=12.6
Q ss_pred hhhcCcCEEEEEecCH
Q 009734 26 FLQRMALRVLLVEADD 41 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~ 41 (527)
.+.+...+||+||-|+
T Consensus 28 ~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 28 ALLYGGAKVAVIDLDL 43 (286)
T ss_dssp HHHHTTCCEEEEECCT
T ss_pred HHHHCCCcEEEEECCC
Confidence 3445678999999998
No 438
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=26.69 E-value=2.4e+02 Score=26.02 Aligned_cols=67 Identities=9% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...+...+++.||++.... +.. +.++.+.... +|.||+--.. .+. +.++.+.+. ..+|||++..
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgii~~~~~--~~~-~~~~~l~~~---~~iPvV~~~~ 109 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPRF--LSV-DEIDDIIDA---HSQPIMVLNR 109 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTT--CSEEEEECSS--SCH-HHHHHHHHT---CSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcC--CCEEEEecCC--CCh-HHHHHHHhc---CCCCEEEEcc
Confidence 345566777788899987754 222 3455554443 8887774322 222 455666541 3689998865
Q ss_pred C
Q 009734 116 Q 116 (527)
Q Consensus 116 ~ 116 (527)
.
T Consensus 110 ~ 110 (296)
T 3brq_A 110 R 110 (296)
T ss_dssp C
T ss_pred c
Confidence 3
No 439
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=26.68 E-value=68 Score=33.68 Aligned_cols=100 Identities=10% Similarity=0.200 Sum_probs=62.9
Q ss_pred ecCHHHHHHHHHHHHhCCC--EEEE---EC-------------------------CHHHHHHHHHcCCCCceEEEEeCCC
Q 009734 38 EADDSTRQIVTALLRKSSY--RVTA---VP-------------------------DGLKAWEVLKGRPRNIDLILTEVDL 87 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy--~V~~---a~-------------------------dg~eALe~L~~~~~~pDLVLlDl~M 87 (527)
+++....+.++..++..|| +|.. +. +..++++.+...-..++|++++--+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4556677778888876665 3221 21 4567765543211137899998878
Q ss_pred CCCCHHHHHHHHHhcccCCCCeEEEEecC---CCHHHHHHHHHcCCCEE-EeCCCCHHHH
Q 009734 88 PSISGFALLTLVMEHEICKNIPVIMMSSQ---DSVSTVYKCMMRGAADY-LVKPVRRNEL 143 (527)
Q Consensus 88 P~mDGlelL~~Lr~~~~~~~iPVIilSa~---~d~~~~~~al~~GA~Dy-L~KP~~~eeL 143 (527)
+.-| ++-+++|++. ..+||+ ... .....+.++++.|+.++ ++|+-...-|
T Consensus 299 ~~dD-~~g~~~l~~~---~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGi 352 (436)
T 2al1_A 299 AEDD-WEAWSHFFKT---AGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTL 352 (436)
T ss_dssp CTTC-HHHHHHHHTT---CCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCH
T ss_pred CCcC-HHHHHHHHhc---CCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCH
Confidence 7655 6667777665 357885 332 35788889999997666 5677543333
No 440
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=26.54 E-value=1.9e+02 Score=29.55 Aligned_cols=88 Identities=16% Similarity=0.118 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCC-C----CCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-P----SISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~M-P----~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
..+.++.+-+..+.-|. .+.+.++|..+++.. .|.|.+.-.- + +..-++++.++++.- .+|||.-.+
T Consensus 213 ~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~aG---ad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~---~~pVia~GG 286 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVKGLLSAEDADRCIAEG---ADGVILSNHGGRQLDCAISPMEVLAQSVAKT---GKPVLIDSG 286 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHTT---CSEEEECCGGGTSCTTCCCGGGTHHHHHHHH---CSCEEECSS
T ss_pred cHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHcC---CCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc---CCeEEEECC
Confidence 34566666666665544 467888887777643 7888773210 0 112266777776542 459998888
Q ss_pred CCCHHHHHHHHHcCCCEEEeC
Q 009734 116 QDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 116 ~~d~~~~~~al~~GA~DyL~K 136 (527)
-.+...+.+++.+||+...+=
T Consensus 287 I~~~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 287 FRRGSDIVKALALGAEAVLLG 307 (380)
T ss_dssp CCSHHHHHHHHHTTCSCEEES
T ss_pred CCCHHHHHHHHHhCCcHhheh
Confidence 889999999999999888653
No 441
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=26.53 E-value=3.6e+02 Score=26.03 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=47.0
Q ss_pred HHHHHHHcCCCCceEEEEe----C--CCC----CCCHHHHHHHHHhcccCCCCeEEEEecCCC-H-----HHHHHHHHcC
Q 009734 66 KAWEVLKGRPRNIDLILTE----V--DLP----SISGFALLTLVMEHEICKNIPVIMMSSQDS-V-----STVYKCMMRG 129 (527)
Q Consensus 66 eALe~L~~~~~~pDLVLlD----l--~MP----~mDGlelL~~Lr~~~~~~~iPVIilSa~~d-~-----~~~~~al~~G 129 (527)
.|++.+... ..++++|+. . .-| ++..+.. |++. .++|||+.+++.. . .....+..+|
T Consensus 148 ~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~---lk~~---~~~pVi~d~sH~~g~~~~v~~~~~aAva~G 220 (262)
T 1zco_A 148 YSAEYIMAQ-GNENVILCERGIRTFETATRFTLDISAVPV---VKEL---SHLPIIVDPSHPAGRRSLVIPLAKAAYAIG 220 (262)
T ss_dssp HHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHHH---HHHH---BSSCEEECSSTTTCSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcCHHHHHH---HHhh---hCCCEEEEcCCCCCccchHHHHHHHHHHcC
Confidence 345555544 347899987 2 122 3345544 4433 2578989888862 2 5567788999
Q ss_pred CCEEE-eCC-------------CCHHHHHHHHHHH
Q 009734 130 AADYL-VKP-------------VRRNELRNLWQHV 150 (527)
Q Consensus 130 A~DyL-~KP-------------~~~eeL~~~L~~v 150 (527)
|++++ -|- +.+++|..+++.+
T Consensus 221 a~Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i 255 (262)
T 1zco_A 221 ADGIMVEVHPEPEKALSDSQQQLTFDDFLQLLKEL 255 (262)
T ss_dssp CSEEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccCChhhcCCCHHHHHHHHHHH
Confidence 98765 454 3456666665554
No 442
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=26.53 E-value=2.2e+02 Score=26.56 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCEEEEECC------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVPD------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~d------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+.. ..+.++.+.... +|-||+--..+. -+.++.+.+ ..+|||++...
T Consensus 29 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~---~~~~~~l~~----~~iPvV~i~~~ 98 (288)
T 3gv0_A 29 VFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGS--ADGVIISKIEPN---DPRVRFMTE----RNMPFVTHGRS 98 (288)
T ss_dssp HHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTC--CSEEEEESCCTT---CHHHHHHHH----TTCCEEEESCC
T ss_pred HHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCC--ccEEEEecCCCC---cHHHHHHhh----CCCCEEEECCc
Confidence 33455566778998877531 233445554443 887776321111 255666654 36899987654
No 443
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=26.45 E-value=4e+02 Score=26.11 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=32.1
Q ss_pred cCcCEEEEEecCH---HHHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHcCCCCceEEEEeC
Q 009734 29 RMALRVLLVEADD---STRQIVTALLRKSSYRVTAVPD---GL----KAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 29 ~~~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~d---g~----eALe~L~~~~~~pDLVLlDl 85 (527)
....+|++++-|. ...+.+..+++..|+.+..... .. +++...... .||+||+|.
T Consensus 130 ~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~--~~dvvIiDt 194 (306)
T 1vma_A 130 DEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR--NKDVVIIDT 194 (306)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT--TCSEEEEEE
T ss_pred hcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc--CCCEEEEEC
Confidence 3456899998764 2333455666666776654322 22 234332333 389999995
No 444
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=26.45 E-value=57 Score=31.95 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=38.3
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCC------CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHH
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQD------SVSTVYKCMMRGAADYLVKPVRRNELRNLWQHV 150 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~------d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v 150 (527)
+++++++|+. .++|||+|+-.. -...+..|...|++++|.--+..+++...+..+
T Consensus 80 ~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 5677888765 478999985222 245667789999999998877666655544443
No 445
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=26.44 E-value=1.8e+02 Score=27.54 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=47.0
Q ss_pred CEEEEEec-CHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEA-DDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDD-D~~~---r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-+ +... .+.++..|++.|..+.. . .+...++..+.... ||+||+-. .+.+...+++.++
T Consensus 139 ~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~i~~~~--~~~~a~~~~~~~~ 214 (346)
T 1usg_A 139 QRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKEN--IDFVYYGG--YYPEMGQMLRQAR 214 (346)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcC--CCEEEEcC--cchHHHHHHHHHH
Confidence 46666644 3332 23456667777876542 2 24556676666544 89998853 2234667888887
Q ss_pred hcccCCCCeEEEEecCCC
Q 009734 101 EHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d 118 (527)
+.. ..+|+|...+..+
T Consensus 215 ~~g--~~~~~~~~~~~~~ 230 (346)
T 1usg_A 215 SVG--LKTQFMGPEGVGN 230 (346)
T ss_dssp HTT--CCCEEEECGGGCC
T ss_pred HcC--CCCeEEecCCCCc
Confidence 765 3567665444333
No 446
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=26.44 E-value=1.3e+02 Score=31.31 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.++.+.+.. +|+|++|.....-.. .++++++++.- ++|||+ ....+.+.+..+.++||+...+
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence 44444444434 899999876533222 67778886542 678875 2234688889999999998887
No 447
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=26.40 E-value=87 Score=26.27 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=9.1
Q ss_pred CcCEEEEEecCHHHHH
Q 009734 30 MALRVLLVEADDSTRQ 45 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~ 45 (527)
...+|.++|.++...+
T Consensus 28 ~g~~V~~id~~~~~~~ 43 (141)
T 3llv_A 28 AGKKVLAVDKSKEKIE 43 (141)
T ss_dssp TTCCEEEEESCHHHHH
T ss_pred CCCeEEEEECCHHHHH
Confidence 3456666666665433
No 448
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=26.34 E-value=70 Score=32.37 Aligned_cols=98 Identities=11% Similarity=0.140 Sum_probs=65.4
Q ss_pred HHHHhCCCEEE--EECCHHHHHHHHHcCCCCceEEEEeCCC-----CCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHH
Q 009734 49 ALLRKSSYRVT--AVPDGLKAWEVLKGRPRNIDLILTEVDL-----PSISGFALLTLVMEHEICKNIPVIMMSSQDSVST 121 (527)
Q Consensus 49 ~lL~~~Gy~V~--~a~dg~eALe~L~~~~~~pDLVLlDl~M-----P~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~ 121 (527)
..|+..|+.+. -+..|...+..|..-+ +|.|=+|-.+ .+.....+++.|-.....-++.|| ..+-.+.+.
T Consensus 283 ~~l~~~G~~ialDDfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~v~~i~~~a~~l~~~vv-aEGVEt~~~ 359 (400)
T 3sy8_A 283 VRLWIMGCGLAMDDFGAGYSSLDRLCEFP--FSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLV-VEGVESDEQ 359 (400)
T ss_dssp HHHHHHTCEEEEEEECSCSGGGGSSSSCC--CSEEEECTHHHHHHHHCTTHHHHHHHHHHHHHHHTCEEE-ECCCCCHHH
T ss_pred HHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhhhhcChhHHHHHHHHHHHHHHcCCeEE-EecCCcHHH
Confidence 45677788754 4777878888777654 8999988533 123344455555433222244444 577788888
Q ss_pred HHHHHHcCCCEE----EeCCCCHHHHHHHHHH
Q 009734 122 VYKCMMRGAADY----LVKPVRRNELRNLWQH 149 (527)
Q Consensus 122 ~~~al~~GA~Dy----L~KP~~~eeL~~~L~~ 149 (527)
...+.++|++.+ +.||...+++...+..
T Consensus 360 ~~~l~~~g~~~~QGy~~~~P~~~~~~~~~~~~ 391 (400)
T 3sy8_A 360 RVRLIELGCSIAQGYLFARPMPEQHFLDYCSG 391 (400)
T ss_dssp HHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEcCeecCcCCHHHHHHHHHh
Confidence 888999997543 7899999999866554
No 449
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=26.34 E-value=1.8e+02 Score=26.29 Aligned_cols=68 Identities=12% Similarity=-0.028 Sum_probs=45.4
Q ss_pred hhhcCcCEEEEEecCHHHHHHHHHHHHhCCCE--EEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 26 FLQRMALRVLLVEADDSTRQIVTALLRKSSYR--VTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 26 ~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy~--V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
.+.+...+|..||-++...+..++.++..|.. +.. ..+..+.+..+ ..||+|+++..+ +-- +++.+.+
T Consensus 72 ~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~----~~~D~v~~~~~~---~~~-~l~~~~~ 142 (204)
T 3njr_A 72 EWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL----PLPEAVFIGGGG---SQA-LYDRLWE 142 (204)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS----CCCSEEEECSCC---CHH-HHHHHHH
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC----CCCCEEEECCcc---cHH-HHHHHHH
Confidence 33334689999999999999999999887753 443 44555433221 249999998633 333 6676654
No 450
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.12 E-value=1.4e+02 Score=29.69 Aligned_cols=57 Identities=7% Similarity=-0.076 Sum_probs=45.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeC
Q 009734 78 IDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 78 pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~K 136 (527)
.+||.+|..- .--..++++++++.- ...+||++=-+-.+.+.+.+++.+||+..++-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 5899999754 334468999997752 12789998878889999999999999999876
No 451
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=26.10 E-value=1.5e+02 Score=28.48 Aligned_cols=85 Identities=7% Similarity=-0.020 Sum_probs=51.2
Q ss_pred CEEEEEec-CHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVEA-DDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVDD-D~~~---r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|-+ +..- .+.+++.|+..|+.++. . .+....+..+.... ||+||+.. .+.+...+++.++
T Consensus 139 ~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~--~d~v~~~~--~~~~a~~~~~~~~ 214 (356)
T 3ipc_A 139 AKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAG--VSIIYWGG--LHTEAGLIIRQAA 214 (356)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTT--CCEEEEES--CHHHHHHHHHHHH
T ss_pred CEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcC--CCEEEEcc--CchHHHHHHHHHH
Confidence 46666644 3332 33456667777875421 1 36677777776654 89999743 2334567888887
Q ss_pred hcccCCCCeEEEEecCCCHHHH
Q 009734 101 EHEICKNIPVIMMSSQDSVSTV 122 (527)
Q Consensus 101 ~~~~~~~iPVIilSa~~d~~~~ 122 (527)
+... .+|+|...+..+....
T Consensus 215 ~~g~--~~~~~~~~~~~~~~~~ 234 (356)
T 3ipc_A 215 DQGL--KAKLVSGDGIVSNELA 234 (356)
T ss_dssp HHTC--CCEEEECGGGCSHHHH
T ss_pred HCCC--CCcEEEeccccCHHHH
Confidence 7653 5787765555555444
No 452
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=26.04 E-value=1.4e+02 Score=26.44 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=45.4
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCH---HHHHHH
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRK-SSYRVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISG---FALLTL 98 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~-~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDG---lelL~~ 98 (527)
+-..+.+...+|..||-++...+..+. .. ...++. ..+..+. .. ...+|+|++...+..+.- ..+++.
T Consensus 60 ~~~~l~~~~~~v~~~D~s~~~~~~a~~--~~~~~~~~~-~~d~~~~---~~--~~~~D~v~~~~~l~~~~~~~~~~~l~~ 131 (218)
T 3ou2_A 60 WTRHLSGLADRVTALDGSAEMIAEAGR--HGLDNVEFR-QQDLFDW---TP--DRQWDAVFFAHWLAHVPDDRFEAFWES 131 (218)
T ss_dssp HHHHHHHHSSEEEEEESCHHHHHHHGG--GCCTTEEEE-ECCTTSC---CC--SSCEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHHHHh--cCCCCeEEE-ecccccC---CC--CCceeEEEEechhhcCCHHHHHHHHHH
Confidence 333333335688889888877766665 11 112222 3343322 22 234999999877766554 566777
Q ss_pred HHhcccCCCCeEEEEe
Q 009734 99 VMEHEICKNIPVIMMS 114 (527)
Q Consensus 99 Lr~~~~~~~iPVIilS 114 (527)
+.+. ..++-.+++.+
T Consensus 132 ~~~~-L~pgG~l~~~~ 146 (218)
T 3ou2_A 132 VRSA-VAPGGVVEFVD 146 (218)
T ss_dssp HHHH-EEEEEEEEEEE
T ss_pred HHHH-cCCCeEEEEEe
Confidence 7543 22333444443
No 453
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=26.01 E-value=2.8e+02 Score=22.93 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=34.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEEe
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILTE 84 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLlD 84 (527)
+.+|+|+---. +...+...|...|++|+.+..-.+.++.+.... +.++..|
T Consensus 6 ~~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~--~~~~~gd 56 (141)
T 3llv_A 6 RYEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG--FDAVIAD 56 (141)
T ss_dssp CCSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT--CEEEECC
T ss_pred CCEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC--CcEEECC
Confidence 35899998754 677788888888999888765555555554322 4444444
No 454
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=25.97 E-value=2.5e+02 Score=27.73 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=57.4
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE-C-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV-P-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNI 108 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a-~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~i 108 (527)
++||.||---..-+..+..+....+++++.+ . +...+-+..+.....+.....+ | ++.+-.. +++
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~----~~~ll~~---~~~ 72 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------S----YESLLED---PEI 72 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------S----HHHHHHC---TTC
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------C----HHHHhcC---CCC
Confidence 4789998875555555555555457776653 3 3444433333322001111111 1 1222221 123
Q ss_pred eEEEEec--CCCHHHHHHHHHcCCCEEEeCCCC--HHHHHHHHHHH
Q 009734 109 PVIMMSS--QDSVSTVYKCMMRGAADYLVKPVR--RNELRNLWQHV 150 (527)
Q Consensus 109 PVIilSa--~~d~~~~~~al~~GA~DyL~KP~~--~eeL~~~L~~v 150 (527)
-+|++.. ....+.+..|++.|..=|+-||+. .++...+++.+
T Consensus 73 D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a 118 (362)
T 1ydw_A 73 DALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 118 (362)
T ss_dssp CEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHH
T ss_pred CEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHH
Confidence 3444433 335678889999999889999974 56666655544
No 455
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.83 E-value=1.9e+02 Score=30.25 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=33.5
Q ss_pred hhcCcCEEEEEecCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHcCCCCceEEEEeC
Q 009734 27 LQRMALRVLLVEADD---STRQIVTALLRKSSYRVTAVP---DG----LKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~---~~r~~L~~lL~~~Gy~V~~a~---dg----~eALe~L~~~~~~pDLVLlDl 85 (527)
+.+...+|+||+-|. ...+.+..+-+..|+.+.... +. .++++.+... .+|+||+|.
T Consensus 121 l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~--~~DvvIIDT 187 (433)
T 3kl4_A 121 YKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKN--KMDIIIVDT 187 (433)
T ss_dssp HHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTT--TCSEEEEEE
T ss_pred HHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhc--CCCEEEEEC
Confidence 334567899988663 334445555556676665443 22 2344544432 499999995
No 456
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=25.83 E-value=59 Score=28.59 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=17.9
Q ss_pred EEEEec--CHHHHHHHHHHHHhCCCEEEEEC
Q 009734 34 VLLVEA--DDSTRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 34 VLLVDD--D~~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
|||--. +......+.+.|...||+++...
T Consensus 27 vliSv~d~dK~~l~~~a~~l~~lGf~i~AT~ 57 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLGVAEQLHNEGFKLFATE 57 (143)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTCEEEEEH
T ss_pred EEEEecccchHHHHHHHHHHHHCCCEEEECc
Confidence 555423 34445556667888899877654
No 457
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=25.79 E-value=71 Score=28.74 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=62.2
Q ss_pred cCEEEEEecCH-----H-HHHHHHHHHHhCCCEEEE---E-----C-------C----HHHHHHHHHcCCCCceEEEEeC
Q 009734 31 ALRVLLVEADD-----S-TRQIVTALLRKSSYRVTA---V-----P-------D----GLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 31 ~lrVLLVDDD~-----~-~r~~L~~lL~~~Gy~V~~---a-----~-------d----g~eALe~L~~~~~~pDLVLlDl 85 (527)
+++|.|.-... . ..+.+...|+..| .|.. + . + ...-++.++. .|+||.++
T Consensus 11 ~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vva~~ 85 (165)
T 2khz_A 11 PCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVVAEV 85 (165)
T ss_dssp CCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEEEEC
Confidence 46788774222 1 4577888888888 7631 0 0 1 1122355543 69999988
Q ss_pred CCCCCCH---HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCC---CEEEeCCCCHHHHHHHHHHHHHhh
Q 009734 86 DLPSISG---FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGA---ADYLVKPVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 86 ~MP~mDG---lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA---~DyL~KP~~~eeL~~~L~~v~rr~ 154 (527)
. ..|- +|+--.. . .+.|||++....... ...+|-.|. ..|-...++.++|...|...++..
T Consensus 86 ~--~~d~Gt~~EiGyA~---a--lgKPVi~l~~~~~~~-~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 86 T--QPSLGVGYELGRAV---A--LGKPILCLFRPQSGR-VLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp S--SCCHHHHHHHHHHH---H--TCSSEEEEECTTTTC-CCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHTS
T ss_pred C--CCCCCHHHHHHHHH---H--CCCEEEEEEcCCCCC-cchhhhcccCccceeEEEecCHHHHHHHHHHHHHhc
Confidence 7 3343 3433332 2 367999987544201 111222233 335555568889998888887654
No 458
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=25.77 E-value=2.8e+02 Score=27.86 Aligned_cols=99 Identities=14% Similarity=0.118 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCC--EEEE-EC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 43 TRQIVTALLRKSSY--RVTA-VP---DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy--~V~~-a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
..+.++.+-+..|. .+.. +. +..+|++.++.-. .+++.+++--+|..| ++.+.+|++. ..+||+.--..
T Consensus 183 d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~---~~iPIa~dE~~ 257 (372)
T 3tj4_A 183 DIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARN---TSIPIALGEQL 257 (372)
T ss_dssp HHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHH---CSSCEEECTTC
T ss_pred HHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhh---cCCCEEeCCCc
Confidence 34455555555543 3322 22 6788888777543 478888887676433 6777778765 26888754445
Q ss_pred CCHHHHHHHHHcCCCEEE-eCCCCHHHHHHH
Q 009734 117 DSVSTVYKCMMRGAADYL-VKPVRRNELRNL 146 (527)
Q Consensus 117 ~d~~~~~~al~~GA~DyL-~KP~~~eeL~~~ 146 (527)
.+.....++++.|+.|++ .|+-...=|...
T Consensus 258 ~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~ 288 (372)
T 3tj4_A 258 YTVDAFRSFIDAGAVAYVQPDVTRLGGITEY 288 (372)
T ss_dssp CSHHHHHHHHHTTCCSEECCCTTTTTHHHHH
T ss_pred cCHHHHHHHHHcCCCCEEEeCccccCCHHHH
Confidence 577888889999976665 788875444433
No 459
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=25.68 E-value=1.3e+02 Score=30.63 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe------C-CCCHHHHHHHHHHHHHhh
Q 009734 93 FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV------K-PVRRNELRNLWQHVWRRQ 154 (527)
Q Consensus 93 lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~------K-P~~~eeL~~~L~~v~rr~ 154 (527)
++++.+|++. .+++|||...+-.+.+.+.+++.+||+...+ . |.-..++..-|...+.+.
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~l~~~m~~~ 331 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVMAKK 331 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHHHHHHHHHc
Confidence 7888888775 3579999999999999999999999876643 2 665566666665555443
No 460
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=25.67 E-value=2.2e+02 Score=24.24 Aligned_cols=69 Identities=17% Similarity=0.157 Sum_probs=45.9
Q ss_pred hhcCcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 27 LQRMALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 27 ~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
+.+...+|..||-++...+..+..+...|+ .+.. ..+..+. +... ..+|+|+++..+. +-..+++.+.+
T Consensus 51 l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~v~~~~~~~--~~~~~l~~~~~ 122 (192)
T 1l3i_A 51 LAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA---LCKI-PDIDIAVVGGSGG--ELQEILRIIKD 122 (192)
T ss_dssp HHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH---HTTS-CCEEEEEESCCTT--CHHHHHHHHHH
T ss_pred HHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh---cccC-CCCCEEEECCchH--HHHHHHHHHHH
Confidence 333337999999999999999998887765 3433 4555542 3221 2499999986543 34666777654
No 461
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=25.60 E-value=1.2e+02 Score=29.44 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=53.9
Q ss_pred CHHHHHHHHHcCCCCceEEEEeCCC----CCC-CHHHHHHHHHhcccCCCCeEEE-EecCCCHHHHHHHHHcCCCEEEeC
Q 009734 63 DGLKAWEVLKGRPRNIDLILTEVDL----PSI-SGFALLTLVMEHEICKNIPVIM-MSSQDSVSTVYKCMMRGAADYLVK 136 (527)
Q Consensus 63 dg~eALe~L~~~~~~pDLVLlDl~M----P~m-DGlelL~~Lr~~~~~~~iPVIi-lSa~~d~~~~~~al~~GA~DyL~K 136 (527)
+..++++.++... .|.+-+|++- |.+ -|..+++.||... +++|+.+ +--.+-...+..+.++||+.+.+-
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~--p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH 116 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYG--ITAGMDVHLMVKPVDALIESFAKAGATSIVFH 116 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHT--CCSCEEEEEECSSCHHHHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhC--CCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEc
Confidence 4567778777644 5666666543 332 4889999998753 4567664 223334557788889999888776
Q ss_pred CCCHHHHHHHHHHH
Q 009734 137 PVRRNELRNLWQHV 150 (527)
Q Consensus 137 P~~~eeL~~~L~~v 150 (527)
......+...++.+
T Consensus 117 ~Ea~~~~~~~i~~i 130 (246)
T 3inp_A 117 PEASEHIDRSLQLI 130 (246)
T ss_dssp GGGCSCHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 55444555555554
No 462
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=25.37 E-value=82 Score=34.91 Aligned_cols=97 Identities=6% Similarity=-0.053 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCEEEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCC-CC-HHHHHHHHHhcccCCCCeEEEEecCCC
Q 009734 44 RQIVTALLRKSSYRVTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPS-IS-GFALLTLVMEHEICKNIPVIMMSSQDS 118 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~-mD-GlelL~~Lr~~~~~~~iPVIilSa~~d 118 (527)
...+..+|+..||+|+.. .+ ++.++.+.+.. +|+|.+-.-+.. +. .-++++.|++... ..|++.+...
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~e~~--adiv~lSsl~~~~~~~~~~v~~~Lk~aG~----~~V~vgG~P~ 599 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFKKSG--AQVADLCSSAKVYAQQGLEVAKALKAAGA----KALYLSGAFK 599 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-HHHHHHHHHHT--CSEEEEECCHHHHHHHHHHHHHHHHHTTC----SEEEEESCGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHHhcC--CCEEEEecccHHHHHHHHHHHHHHHhCCC----CeEEEeCCCC
Confidence 345666889999997763 34 77777776654 899988754432 21 2467777876542 3355666421
Q ss_pred H--HHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Q 009734 119 V--STVYKCMMRGAADYLVKPVRRNELRNLWQ 148 (527)
Q Consensus 119 ~--~~~~~al~~GA~DyL~KP~~~eeL~~~L~ 148 (527)
. +......+ |+++|+.--.+..++...+.
T Consensus 600 ~d~~~~~~~~~-G~D~~~~~g~~~~~~l~~l~ 630 (637)
T 1req_B 600 EFGDDAAEAEK-LIDGRLFMGMDVVDTLSSTL 630 (637)
T ss_dssp GGGGGHHHHHH-HCCCEECTTCCHHHHHHHHH
T ss_pred ccchhhHHHHh-ccceEecCCcCHHHHHHHHH
Confidence 1 11234445 99999988888777665544
No 463
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=25.33 E-value=2.9e+02 Score=26.95 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=49.8
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC-EEEEEC---CHHHHHHHHHcCCCCceEEEEeCCCC-----------CCCH-HHH
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTAVP---DGLKAWEVLKGRPRNIDLILTEVDLP-----------SISG-FAL 95 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~---dg~eALe~L~~~~~~pDLVLlDl~MP-----------~mDG-lel 95 (527)
|+|||.--.-.+...|...|.+.|+ +|+.+. +....-+.++. +|+||--.... ...| ..+
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~----~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l 76 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLK----ADFIVHLAGVNRPEHDKEFSLGNVSYLDHV 76 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHH----CSEEEECCCSBCTTCSTTCSSSCCBHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhcc----CCEEEECCcCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999998999888888887788 888754 34444444542 79988643221 1223 345
Q ss_pred HHHHHhcccCCCCeEEEEecC
Q 009734 96 LTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 96 L~~Lr~~~~~~~iPVIilSa~ 116 (527)
++.+++.. ....||++|+.
T Consensus 77 ~~a~~~~~--~~~~~v~~Ss~ 95 (369)
T 3st7_A 77 LDILTRNT--KKPAILLSSSI 95 (369)
T ss_dssp HHHHTTCS--SCCEEEEEEEG
T ss_pred HHHHHHhC--CCCeEEEeCch
Confidence 55554432 12368877764
No 464
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=25.32 E-value=1.3e+02 Score=29.41 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred cCEEEEEecC--H-------HHHHHHHHHHHhCCCEEEEEC
Q 009734 31 ALRVLLVEAD--D-------STRQIVTALLRKSSYRVTAVP 62 (527)
Q Consensus 31 ~lrVLLVDDD--~-------~~r~~L~~lL~~~Gy~V~~a~ 62 (527)
+||||+|-.. + .....|...|.+.|++|..+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4799999865 1 245567778888899877643
No 465
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=25.16 E-value=84 Score=34.75 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=47.7
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHcCCCCceEEEE--eCCCCCCCH-------HHHHHHHH
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLKGRPRNIDLILT--EVDLPSISG-------FALLTLVM 100 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~~~~~~pDLVLl--Dl~MP~mDG-------lelL~~Lr 100 (527)
..++|||||-...+...|...|+..|+.+..+..... .+ + ..+|.||+ --.-|...+ .++++.+.
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-~~-~----~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-VD-L----ARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-CC-G----GGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-cc-c----cCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 3579999999999999999999999998776532111 11 1 13788887 223343333 23444433
Q ss_pred hcccCCCCeEEEEe
Q 009734 101 EHEICKNIPVIMMS 114 (527)
Q Consensus 101 ~~~~~~~iPVIilS 114 (527)
+ .++||+-+.
T Consensus 519 ~----~~iPiLGIC 528 (645)
T 3r75_A 519 D----EGKPFMAVC 528 (645)
T ss_dssp H----HTCCEEEET
T ss_pred H----CCCCEEEEC
Confidence 2 367998765
No 466
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=24.84 E-value=3.3e+02 Score=24.82 Aligned_cols=64 Identities=14% Similarity=-0.003 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
+...+...+++.||.+..+. +.. +.++.+.... +|.||+--.. .+ -++++.+... ++|||++..
T Consensus 21 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgii~~~~~--~~-~~~~~~l~~~----~iPvV~~~~ 90 (275)
T 3d8u_A 21 FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESR--PAGVVLFGSE--HS-QRTHQLLEAS----NTPVLEIAE 90 (275)
T ss_dssp HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSC--CCCEEEESSC--CC-HHHHHHHHHH----TCCEEEESS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcC--CCEEEEeCCC--CC-HHHHHHHHhC----CCCEEEEee
Confidence 34455666778899876532 332 2355555443 8866653221 12 2566666542 689998854
No 467
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=24.79 E-value=2.3e+02 Score=27.20 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=24.0
Q ss_pred cCcCEEEEEecCHHHHHHHHHHHHhCC--CEEEE
Q 009734 29 RMALRVLLVEADDSTRQIVTALLRKSS--YRVTA 60 (527)
Q Consensus 29 ~~~lrVLLVDDD~~~r~~L~~lL~~~G--y~V~~ 60 (527)
..+++|||.--.-.+...|...|...| ++|+.
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEE
Confidence 345789999999999888888887777 56554
No 468
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=24.68 E-value=1.6e+02 Score=26.50 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=33.5
Q ss_pred chHHhhhcCcCEEEEE----ecCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH
Q 009734 22 KWETFLQRMALRVLLV----EADDSTRQIVTALLRKSSYRVTAVPDGLKAWEVLK 72 (527)
Q Consensus 22 ~~e~~~~~~~lrVLLV----DDD~~~r~~L~~lL~~~Gy~V~~a~dg~eALe~L~ 72 (527)
|++.+-....+||||| +|.......|..+.-..++.++.+=+.+||-++|+
T Consensus 75 Ri~~L~~~y~lrVLL~~VDv~d~~~~L~eL~~~c~~~~~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 75 RLQSLGKNFALRVLLVQVDVKDPQQALKELAKMCILADCTLILAWSPEEAGRYLE 129 (146)
T ss_dssp HHHHHTTSSSEEEEEEECCSSSCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH
T ss_pred HHHHhccccceEEEEEEEeCCChHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH
Confidence 3444444445788776 35554444555554455899999999999988876
No 469
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=24.62 E-value=2.3e+02 Score=27.53 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=25.8
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhC-CCEEEEE
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKS-SYRVTAV 61 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~-Gy~V~~a 61 (527)
++++|||.--.-.+...|...|.+. |++|+.+
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~ 55 (372)
T 3slg_A 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGM 55 (372)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEE
Confidence 4579999999888888888877665 8988764
No 470
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=24.60 E-value=3.1e+02 Score=24.61 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=44.6
Q ss_pred ecC-HHHHHHHHHHHHhCCCEEEEECC---------HHHHHHHHHcCCCCceEEEEeCC---CCCCCHHHHHHHHHhccc
Q 009734 38 EAD-DSTRQIVTALLRKSSYRVTAVPD---------GLKAWEVLKGRPRNIDLILTEVD---LPSISGFALLTLVMEHEI 104 (527)
Q Consensus 38 DDD-~~~r~~L~~lL~~~Gy~V~~a~d---------g~eALe~L~~~~~~pDLVLlDl~---MP~mDGlelL~~Lr~~~~ 104 (527)
+++ ....+.+..+|+..|+.|..-.+ ....++.++. .|+||..+. -+..|--...+.=....
T Consensus 22 ~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~----aD~vVA~ldpf~g~~~D~GTafEiGyA~A- 96 (161)
T 2f62_A 22 PDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKD----CDAVIADLSPFRGHEPDCGTAFEVGCAAA- 96 (161)
T ss_dssp TTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHH----CSEEEEECCCCSSSSCCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHh----CCEEEEEecCCCCCCCCCcHHHHHHHHHH-
Confidence 456 78888999999999998755222 2222455553 689998876 34455333333222222
Q ss_pred CCCCeEEEEecC
Q 009734 105 CKNIPVIMMSSQ 116 (527)
Q Consensus 105 ~~~iPVIilSa~ 116 (527)
.+.|||++...
T Consensus 97 -lgKPVi~l~~d 107 (161)
T 2f62_A 97 -LNKMVLTFTSD 107 (161)
T ss_dssp -TTCEEEEECSC
T ss_pred -CCCEEEEEEcC
Confidence 36699988743
No 471
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=24.41 E-value=3.4e+02 Score=27.41 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHcCCCCceEEEEeCC-------CCCCCHHHHHHHHHhcccCCCCeE
Q 009734 41 DSTRQIVTALLRKSSYRVTA-VP--DGLKAWEVLKGRPRNIDLILTEVD-------LPSISGFALLTLVMEHEICKNIPV 110 (527)
Q Consensus 41 ~~~r~~L~~lL~~~Gy~V~~-a~--dg~eALe~L~~~~~~pDLVLlDl~-------MP~mDGlelL~~Lr~~~~~~~iPV 110 (527)
......+ +.++..|+.+.. +. +..+..+.+.... .|+|.++.. .|.. .++.+.++++. .++||
T Consensus 142 ~~~~~~i-~~~~~~g~~v~~~v~~~~~~e~a~~~~~ag--ad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~---~~~pv 214 (393)
T 2qr6_A 142 ELLSERI-AQVRDSGEIVAVRVSPQNVREIAPIVIKAG--ADLLVIQGTLISAEHVNTGG-EALNLKEFIGS---LDVPV 214 (393)
T ss_dssp HHHHHHH-HHHHHTTSCCEEEECTTTHHHHHHHHHHTT--CSEEEEECSSCCSSCCCC------CHHHHHHH---CSSCE
T ss_pred HHHHHHH-HHHhhcCCeEEEEeCCccHHHHHHHHHHCC--CCEEEEeCCccccccCCCcc-cHHHHHHHHHh---cCCCE
Confidence 3334433 344445776543 22 3344344443333 788888742 1211 33446667654 27899
Q ss_pred EEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 111 IMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 111 IilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
|+ -.-.+.+.+..++++||+...+
T Consensus 215 i~-ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 215 IA-GGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp EE-ECCCSHHHHHHHHTTTCSEEEE
T ss_pred EE-CCcCCHHHHHHHHHcCCCEEEE
Confidence 87 4455788899999999998877
No 472
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=24.39 E-value=2.1e+02 Score=28.75 Aligned_cols=101 Identities=16% Similarity=0.230 Sum_probs=57.8
Q ss_pred cCEEEEE-ecCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLV-EADDSTRQIVTALLRKSSYRVTAVP--DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLV-DDD~~~r~~L~~lL~~~Gy~V~~a~--dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
.++++++ .+++..++.+..++... -.|..+. ...+...++.. -|++|++- + |+. ++ . ....
T Consensus 263 ~~~~v~~~g~~~~~~~~l~~~~~~~-~~v~~~~~lg~~~~~~l~~~----ad~vv~~S---G--g~~-~E-A----~a~G 326 (396)
T 3dzc_A 263 ECQILYPVHLNPNVREPVNKLLKGV-SNIVLIEPQQYLPFVYLMDR----AHIILTDS---G--GIQ-EE-A----PSLG 326 (396)
T ss_dssp TEEEEEECCBCHHHHHHHHHHTTTC-TTEEEECCCCHHHHHHHHHH----CSEEEESC---S--GGG-TT-G----GGGT
T ss_pred CceEEEEeCCChHHHHHHHHHHcCC-CCEEEeCCCCHHHHHHHHHh----cCEEEECC---c--cHH-HH-H----HHcC
Confidence 3566664 55666677776655322 1344332 33555555553 57888874 2 321 12 1 2246
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~r 152 (527)
+|+|++-...... +....|+ .+++.+ +.++|...+..++.
T Consensus 327 ~PvV~~~~~~~~~---e~v~~G~-~~lv~~-d~~~l~~ai~~ll~ 366 (396)
T 3dzc_A 327 KPVLVMRETTERP---EAVAAGT-VKLVGT-NQQQICDALSLLLT 366 (396)
T ss_dssp CCEEECCSSCSCH---HHHHHTS-EEECTT-CHHHHHHHHHHHHH
T ss_pred CCEEEccCCCcch---HHHHcCc-eEEcCC-CHHHHHHHHHHHHc
Confidence 8999753333332 3456676 467655 89999999888874
No 473
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=24.29 E-value=1.7e+02 Score=27.43 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCEEEEEC--C---HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTAVP--D---GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~a~--d---g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+..+. + ..+.++.+... .+|-||+--..+ +. +.++.+.. .+|||++...
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~-----~iPvV~i~~~ 97 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD-----RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT-----TSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc-----CCCEEEEcCC
Confidence 3445566778899876642 1 34566666554 389888753322 22 56666532 6899988654
No 474
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=24.25 E-value=88 Score=31.53 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=40.5
Q ss_pred ccccchHHhhhcCcCEEEEEec--CHHH---HHHHHHHHHhCCCEEEEE--CCHHHHHHHHHcCCCCceEEEEeCCCCCC
Q 009734 18 EGIAKWETFLQRMALRVLLVEA--DDST---RQIVTALLRKSSYRVTAV--PDGLKAWEVLKGRPRNIDLILTEVDLPSI 90 (527)
Q Consensus 18 ~~~~~~e~~~~~~~lrVLLVDD--D~~~---r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~~~~~pDLVLlDl~MP~m 90 (527)
.+.+--++...+....|-||-+ ++.. ...+...+++.||.+... .+..+.++.+.... +|-||+. +
T Consensus 12 ~~~~~~~~~~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l~~~~--vDGiIi~---~-- 84 (412)
T 4fe7_A 12 SGLVPRGSHMFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKIKDWL--GDGVIAD---F-- 84 (412)
T ss_dssp ---------CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC--------CC--CSEEEEE---T--
T ss_pred cCcCcCCCcCCCCCceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhHhcCC--CCEEEEe---c--
Confidence 3444445554444555655532 4443 444556667779976553 34444566665544 8999883 2
Q ss_pred CHHHHHHHHHhcccCCCCeEEEEec
Q 009734 91 SGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 91 DGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
..-++++.+.. .++|||++..
T Consensus 85 ~~~~~~~~l~~----~~iPvV~i~~ 105 (412)
T 4fe7_A 85 DDKQIEQALAD----VDVPIVGVGG 105 (412)
T ss_dssp TCHHHHHHHTT----CCSCEEEEEE
T ss_pred CChHHHHHHhh----CCCCEEEecC
Confidence 22355666643 3789998864
No 475
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=24.23 E-value=4.7e+02 Score=24.87 Aligned_cols=67 Identities=9% Similarity=0.067 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHHH---HHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 42 STRQIVTALLRKSSYRVTAVP---DGLK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 42 ~~r~~L~~lL~~~Gy~V~~a~---dg~e---ALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
.+...+...+++.||.+..+. +... .++.+.... +|-||+--. ..+.-.+.+.+.. ..+|||++..
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~--~~~~~~~~~~~~~----~~iPvV~~~~ 151 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLR--CDAIMIYPR--FLSVDEIDDIIDA----HSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTT--CSEEEECCS--SSCHHHHHHHHHH----CSSCEEEESS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCC--CCChHHHHHHHHc----CCCCEEEEcC
Confidence 345556667788899877653 2322 455555544 898887321 2334445555543 2589998865
Q ss_pred C
Q 009734 116 Q 116 (527)
Q Consensus 116 ~ 116 (527)
.
T Consensus 152 ~ 152 (338)
T 3dbi_A 152 R 152 (338)
T ss_dssp C
T ss_pred C
Confidence 3
No 476
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=24.16 E-value=4.1e+02 Score=26.88 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 LKAWEVLKGRPRNIDLILTEVDLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 ~eALe~L~~~~~~pDLVLlDl~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.+.++.+.+.. +|+|.+|........ ++.++++++.- ++|||+ ......+.+..+.++||+...+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Viv-g~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIV-GNVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEE-ccCCCHHHHHHHHHcCcCEEEE
Confidence 44445444444 899999865533322 46777776542 678876 2235688889999999988776
No 477
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=24.15 E-value=4.7e+02 Score=24.89 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=44.7
Q ss_pred CEEEEEecCHHHHHHHHHHHH-hCCCEEEEECCHHHHH-HHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCe
Q 009734 32 LRVLLVEADDSTRQIVTALLR-KSSYRVTAVPDGLKAW-EVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIP 109 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~-~~Gy~V~~a~dg~eAL-e~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iP 109 (527)
+||.|+--.-.+...+.+.+. ..+++++.+-+..+-+ +.+. . .+| |++|+.-|. ...+.+....+. .+|
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~-~--~~D-vvIDfT~p~-a~~~~~~~a~~~----g~~ 71 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD-G--NTE-VVIDFTHPD-VVMGNLEFLIDN----GIH 71 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH-T--TCC-EEEECSCTT-THHHHHHHHHHT----TCE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc-c--CCc-EEEEccChH-HHHHHHHHHHHc----CCC
Confidence 478888876666666666665 4589887653211111 2222 2 278 788988776 356666665443 567
Q ss_pred EEEEe
Q 009734 110 VIMMS 114 (527)
Q Consensus 110 VIilS 114 (527)
+|+-|
T Consensus 72 ~VigT 76 (245)
T 1p9l_A 72 AVVGT 76 (245)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 77744
No 478
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=24.14 E-value=2.1e+02 Score=27.23 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=39.1
Q ss_pred CEEEEEecCHHHHHHHHHHHHhCCC-EEEE-ECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 32 LRVLLVEADDSTRQIVTALLRKSSY-RVTA-VPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 32 lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~-a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
.+|+-||-++...+.++..++..|+ .+.. ..|..+....+......||+||+|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999998886 3433 4577665443321123499999994
No 479
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=24.10 E-value=2.2e+02 Score=29.09 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=39.8
Q ss_pred cCEEEEEecCHHHHH--HHHHHHHhC-CCEEEEECC---------HHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHH
Q 009734 31 ALRVLLVEADDSTRQ--IVTALLRKS-SYRVTAVPD---------GLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTL 98 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~--~L~~lL~~~-Gy~V~~a~d---------g~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~ 98 (527)
..|+|||-|+..... .+..+...+ |+.+..+.. ..++++.+++.. +|+|| -+.|..-+++.+.
T Consensus 50 g~r~liVtd~~~~~~~g~~~~v~~~L~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~II---avGGGsviD~AK~ 124 (408)
T 1oj7_A 50 DARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQK--VTFLL---AVGGGSVLDGTKF 124 (408)
T ss_dssp TCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHHHHHHHHHHHHHHT--CCEEE---EEESHHHHHHHHH
T ss_pred CCEEEEEECCchhhhccHHHHHHHHhCCCEEEEeCCcCCCcCHHHHHHHHHHHHHcC--CCEEE---EeCCchHHHHHHH
Confidence 369999988765443 333333322 777665542 344666666544 79887 3456666777777
Q ss_pred HHh
Q 009734 99 VME 101 (527)
Q Consensus 99 Lr~ 101 (527)
+..
T Consensus 125 iA~ 127 (408)
T 1oj7_A 125 IAA 127 (408)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 480
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=24.03 E-value=3.3e+02 Score=26.85 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe-CCCC
Q 009734 90 ISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV-KPVR 139 (527)
Q Consensus 90 mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~-KP~~ 139 (527)
...++++.++++.- +++|||...+-.+...+.+++.+||+...+ .|+-
T Consensus 241 ~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 241 IPTARAILEVREVL--PHLPLVASGGVYTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp CBHHHHHHHHHHHC--SSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence 34567777776542 369999999999999999999999987753 4543
No 481
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=23.97 E-value=3.1e+02 Score=22.71 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCCEEEEE
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSYRVTAV 61 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy~V~~a 61 (527)
..+|+||-.-...+..+..+.+..||+++.+
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~ 34 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAF 34 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 3588999998888777776666568887764
No 482
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=23.92 E-value=2.9e+02 Score=27.67 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCC--CEEEE-EC---CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEe
Q 009734 41 DSTRQIVTALLRKSS--YRVTA-VP---DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMS 114 (527)
Q Consensus 41 ~~~r~~L~~lL~~~G--y~V~~-a~---dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilS 114 (527)
....+.++.+-+..| +.+.. +. +..+|++.++.-. .+++ +++--+| -++.+++|++. ..+||+.--
T Consensus 173 ~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~-~~~i-~iE~P~~---~~~~~~~l~~~---~~iPI~~de 244 (379)
T 2rdx_A 173 QSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATR-DLDY-ILEQPCR---SYEECQQVRRV---ADQPMKLDE 244 (379)
T ss_dssp HHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTT-TSCC-EEECCSS---SHHHHHHHHTT---CCSCEEECT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHH-hCCe-EEeCCcC---CHHHHHHHHhh---CCCCEEEeC
Confidence 334455555545555 33322 22 6677877776542 4677 7776566 46777778654 268988655
Q ss_pred cCCCHHHHHHHHHcCCCEE-EeCCCCHHHH
Q 009734 115 SQDSVSTVYKCMMRGAADY-LVKPVRRNEL 143 (527)
Q Consensus 115 a~~d~~~~~~al~~GA~Dy-L~KP~~~eeL 143 (527)
...+.....++++.|+.|+ ..||-...-+
T Consensus 245 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGi 274 (379)
T 2rdx_A 245 CVTGLHMAQRIVADRGAEICCLKISNLGGL 274 (379)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEETTTTTSH
T ss_pred CcCCHHHHHHHHHcCCCCEEEEeccccCCH
Confidence 5557888889988886555 5788874333
No 483
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=23.83 E-value=82 Score=32.41 Aligned_cols=84 Identities=10% Similarity=0.074 Sum_probs=49.5
Q ss_pred cchHHhhhcCcCEEEEEecCHHHHH---HHHHHHHhCCCEEEE--E------CCHHHHHHHHHcCCCCceEEEEeCCCCC
Q 009734 21 AKWETFLQRMALRVLLVEADDSTRQ---IVTALLRKSSYRVTA--V------PDGLKAWEVLKGRPRNIDLILTEVDLPS 89 (527)
Q Consensus 21 ~~~e~~~~~~~lrVLLVDDD~~~r~---~L~~lL~~~Gy~V~~--a------~dg~eALe~L~~~~~~pDLVLlDl~MP~ 89 (527)
-+...++.+...|+|||-|...... .+...|+. |+.+.. + ....++++.+++.. +|+|| -+.|
T Consensus 42 ~~l~~~l~~~g~r~liVtd~~~~~~~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~II---avGG 115 (387)
T 3uhj_A 42 DKLAAYLAPLGKRALVLIDRVLFDALSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHG--SDILV---GVGG 115 (387)
T ss_dssp TTTHHHHGGGCSEEEEEECTTTHHHHHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHT--CSEEE---EESS
T ss_pred HHHHHHHHHcCCEEEEEECchHHHHHHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcC--CCEEE---EeCC
Confidence 3444555544479999998766543 34456677 877522 1 24455666666544 89886 3566
Q ss_pred CCHHHHHHHHHhcccCCCCeEEEE
Q 009734 90 ISGFALLTLVMEHEICKNIPVIMM 113 (527)
Q Consensus 90 mDGlelL~~Lr~~~~~~~iPVIil 113 (527)
..-+++.+.+.-. ..+|+|.+
T Consensus 116 Gs~~D~AK~iA~~---~~~p~i~I 136 (387)
T 3uhj_A 116 GKTADTAKIVAID---TGARIVIA 136 (387)
T ss_dssp HHHHHHHHHHHHH---TTCEEEEC
T ss_pred cHHHHHHHHHHHh---cCCCEEEe
Confidence 6667888877543 47899876
No 484
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=23.81 E-value=85 Score=32.96 Aligned_cols=101 Identities=12% Similarity=0.198 Sum_probs=62.8
Q ss_pred ecCHHHHHHHHHHHHhCCC--EEEE---E-C-----------------------CHHHHHHHHHcCCCCceEEEEeCCCC
Q 009734 38 EADDSTRQIVTALLRKSSY--RVTA---V-P-----------------------DGLKAWEVLKGRPRNIDLILTEVDLP 88 (527)
Q Consensus 38 DDD~~~r~~L~~lL~~~Gy--~V~~---a-~-----------------------dg~eALe~L~~~~~~pDLVLlDl~MP 88 (527)
+++....+.++..++..|| ++.. + . +..++++.+...-..++|+.++--++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566677778888876665 2221 1 1 45666655432111278999988887
Q ss_pred CCCHHHHHHHHHhcccCCCCeEEEEecC---CCHHHHHHHHHcCCCEE-EeCCCCHHHHH
Q 009734 89 SISGFALLTLVMEHEICKNIPVIMMSSQ---DSVSTVYKCMMRGAADY-LVKPVRRNELR 144 (527)
Q Consensus 89 ~mDGlelL~~Lr~~~~~~~iPVIilSa~---~d~~~~~~al~~GA~Dy-L~KP~~~eeL~ 144 (527)
.-| ++-+++|++. ..+||+ ... .....+.++++.|+.++ ++|+-...-|.
T Consensus 297 ~dD-~~g~~~L~~~---~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGit 350 (439)
T 2akz_A 297 QDD-WAAWSKFTAN---VGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVT 350 (439)
T ss_dssp TTC-HHHHHHHHHT---CSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHH
T ss_pred ccc-HHHHHHHHhC---CCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHH
Confidence 655 6666777665 357875 332 36788889999996555 57876443333
No 485
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=23.74 E-value=1.4e+02 Score=29.59 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=42.0
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhC--CC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeCCCCCCC--H---HHHHHHH
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKS--SY---RVTA-VPDGLKAWEVLKGRPRNIDLILTEVDLPSIS--G---FALLTLV 99 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~--Gy---~V~~-a~dg~eALe~L~~~~~~pDLVLlDl~MP~mD--G---lelL~~L 99 (527)
..+|..||=++...+..++.+... |+ ++.. ..|+.+.+.. ....||+||+|...|... + .++++.+
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~ 208 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDPVGPAESLFGQSYYELL 208 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC-------------HHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCCCCcchhhhHHHHHHHH
Confidence 469999999999999999888653 22 3443 5577665543 223599999998554211 1 3556666
Q ss_pred Hh
Q 009734 100 ME 101 (527)
Q Consensus 100 r~ 101 (527)
++
T Consensus 209 ~~ 210 (314)
T 2b2c_A 209 RD 210 (314)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 486
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.72 E-value=2.1e+02 Score=26.72 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCEEEEEC--CHHH---HHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEec
Q 009734 43 TRQIVTALLRKSSYRVTAVP--DGLK---AWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 43 ~r~~L~~lL~~~Gy~V~~a~--dg~e---ALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa 115 (527)
+...+...+++.||++..+. +..+ .++.+.... +|.||+--.-+. ....+++++.+ ..+|||++..
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiii~~~~~~-~~~~~~~~~~~----~~iPvV~~~~ 90 (306)
T 8abp_A 20 EWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASG--AKGFVICTPDPK-LGSAIVAKARG----YDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTT--CCEEEEECSCGG-GHHHHHHHHHH----TTCEEEEESS
T ss_pred HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEeCCCch-hhHHHHHHHHH----CCCcEEEeCC
Confidence 33445566677799876643 4433 344444443 898887542222 22345666654 3789998874
No 487
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=23.60 E-value=87 Score=27.32 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=39.2
Q ss_pred hHHhhhcCcCEEEEEecCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 23 WETFLQRMALRVLLVEADDSTRQIVTALLRKSSY-RVTAVPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~~~r~~L~~lL~~~Gy-~V~~a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
+-..+.+...+|.-||-++...+..++.++..|+ .+....+..+.+..... ..||+|++++
T Consensus 36 ~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~--~~fD~v~~~~ 97 (185)
T 3mti_A 36 DTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVR--EPIRAAIFNL 97 (185)
T ss_dssp HHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCC--SCEEEEEEEE
T ss_pred HHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhcc--CCcCEEEEeC
Confidence 3344444478999999999999999999987665 33333222222221112 3499999984
No 488
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=23.58 E-value=91 Score=27.07 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=49.6
Q ss_pred cCEEEEEecC---HHHHHHHHHHHHhCCCEEEEECCH------HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 31 ALRVLLVEAD---DSTRQIVTALLRKSSYRVTAVPDG------LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 31 ~lrVLLVDDD---~~~r~~L~~lL~~~Gy~V~~a~dg------~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
+.+|.||--. ......+...|.+.||+|..+.-. ..+...+.+-...+|+|++ ..|.-.-.++++.+.+
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii--~vp~~~v~~v~~~~~~ 91 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVF--VVPPKVGLQVAKEAVE 91 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEE--CSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEE--EeCHHHHHHHHHHHHH
Confidence 3578888752 234445555566779987766532 1122222232334787776 4454455666665544
Q ss_pred cccCCCCeEEEEecCCCHHHHHHHHHcCC
Q 009734 102 HEICKNIPVIMMSSQDSVSTVYKCMMRGA 130 (527)
Q Consensus 102 ~~~~~~iPVIilSa~~d~~~~~~al~~GA 130 (527)
.. .. .|++.++....+....+.+.|+
T Consensus 92 ~g--~~-~i~~~~~~~~~~l~~~a~~~Gi 117 (138)
T 1y81_A 92 AG--FK-KLWFQPGAESEEIRRFLEKAGV 117 (138)
T ss_dssp TT--CC-EEEECTTSCCHHHHHHHHHHTC
T ss_pred cC--CC-EEEEcCccHHHHHHHHHHHCCC
Confidence 22 11 2444454445555555555554
No 489
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=23.57 E-value=3.5e+02 Score=28.12 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=0.0
Q ss_pred hHHhhhcCcCEEEEEecCH------HHHHHHHHHHH-------hCCCEEEEECCH----HHHHHHHHcCCCCceEEEEeC
Q 009734 23 WETFLQRMALRVLLVEADD------STRQIVTALLR-------KSSYRVTAVPDG----LKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 23 ~e~~~~~~~lrVLLVDDD~------~~r~~L~~lL~-------~~Gy~V~~a~dg----~eALe~L~~~~~~pDLVLlDl 85 (527)
.+.|.......+.|||++. ....+++.+.. .....+..+... .+..+.+.... .|.|+++.
T Consensus 176 ~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G--~d~ivi~~ 253 (491)
T 1zfj_A 176 ERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAG--ADAIVIDT 253 (491)
T ss_dssp HHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHT--CSEEEECC
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcC--CCeEEEee
Q ss_pred CCCCCCH-HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 86 DLPSISG-FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 86 ~MP~mDG-lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
......+ ++++++|+..- +.+||| .-.-.+.+.+..++.+||+...+
T Consensus 254 a~g~~~~~~~~i~~l~~~~--p~~pvi-~G~v~t~~~a~~~~~~Gad~I~v 301 (491)
T 1zfj_A 254 AHGHSAGVLRKIAEIRAHF--PNRTLI-AGNIATAEGARALYDAGVDVVKV 301 (491)
T ss_dssp SCTTCHHHHHHHHHHHHHC--SSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred ecCcchhHHHHHHHHHHHC--CCCcEe-CCCccCHHHHHHHHHcCCCEEEE
No 490
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=23.53 E-value=1.7e+02 Score=26.84 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=47.4
Q ss_pred CcCEEEEEecCHHHHHHHHHHHHhCCC--EEEE-ECCHHHHHH-HHHcCCCCceEEEEeCCCCCCCHHHHHHHHHh
Q 009734 30 MALRVLLVEADDSTRQIVTALLRKSSY--RVTA-VPDGLKAWE-VLKGRPRNIDLILTEVDLPSISGFALLTLVME 101 (527)
Q Consensus 30 ~~lrVLLVDDD~~~r~~L~~lL~~~Gy--~V~~-a~dg~eALe-~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~ 101 (527)
...+|..||-++......+..++..|+ .|.. ..+..+.+. .+. ..||+|++|...+. -..+++.+..
T Consensus 94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~fD~V~~~~~~~~--~~~~l~~~~~ 164 (232)
T 3ntv_A 94 DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVND---KVYDMIFIDAAKAQ--SKKFFEIYTP 164 (232)
T ss_dssp TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTT---SCEEEEEEETTSSS--HHHHHHHHGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhcc---CCccEEEEcCcHHH--HHHHHHHHHH
Confidence 357999999999999999999988875 3433 566666555 442 24999999965443 3456666643
No 491
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=23.42 E-value=2.8e+02 Score=26.72 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=29.3
Q ss_pred CeEEEEecC--CCHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHH
Q 009734 108 IPVIMMSSQ--DSVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHVW 151 (527)
Q Consensus 108 iPVIilSa~--~d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v~ 151 (527)
+-+|+++.. ...+.+..+++.|..=|+-||+ +.++...+++.+-
T Consensus 63 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 63 VDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred CCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 334444433 3467788899999888899998 4666665555443
No 492
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=23.41 E-value=1.3e+02 Score=29.62 Aligned_cols=100 Identities=20% Similarity=0.280 Sum_probs=53.7
Q ss_pred CEEEEEecC-----HHHHHHHHHHHHhCCCEEEEECCHHHH-----------------HHHHH---cCCCCceEEEEeCC
Q 009734 32 LRVLLVEAD-----DSTRQIVTALLRKSSYRVTAVPDGLKA-----------------WEVLK---GRPRNIDLILTEVD 86 (527)
Q Consensus 32 lrVLLVDDD-----~~~r~~L~~lL~~~Gy~V~~a~dg~eA-----------------Le~L~---~~~~~pDLVLlDl~ 86 (527)
.+|+||-.. ......+...|+..|++|.......+. +..+. .....+|+||+=
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~-- 82 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVL-- 82 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEE--
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEE--
Confidence 578877531 234566778888889987764332221 11110 011236777762
Q ss_pred CCCCCH--HHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Q 009734 87 LPSISG--FALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLVKPVRRNELRNLWQHVWRR 153 (527)
Q Consensus 87 MP~mDG--lelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~KP~~~eeL~~~L~~v~rr 153 (527)
|.|| +.+++.+... ++||+-+.. |-.+||.. +.+.++..+++.++..
T Consensus 83 --GGDGT~l~a~~~~~~~----~~pvlgi~~-------------G~~gfl~~-~~~~~~~~~~~~i~~g 131 (307)
T 1u0t_A 83 --GGDGTFLRAAELARNA----SIPVLGVNL-------------GRIGFLAE-AEAEAIDAVLEHVVAQ 131 (307)
T ss_dssp --ECHHHHHHHHHHHHHH----TCCEEEEEC-------------SSCCSSCS-EEGGGHHHHHHHHHHT
T ss_pred --eCCHHHHHHHHHhccC----CCCEEEEeC-------------CCCccCcc-cCHHHHHHHHHHHHcC
Confidence 7788 5555655432 568776642 33455553 4566777777777654
No 493
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=23.41 E-value=1.4e+02 Score=28.99 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=54.0
Q ss_pred cCEEEEEecCHHHHH-HHHHHHHhCCCEEEE-EC-CHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 31 ALRVLLVEADDSTRQ-IVTALLRKSSYRVTA-VP-DGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~-~L~~lL~~~Gy~V~~-a~-dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
++||.||--=..-+. .+..+.+..+++++. +. +...+-+..+... +. ..+-++. | .. +
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~---------~~~~~~~---l-~~----~ 65 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR--IP---------YADSLSS---L-AA----S 65 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT--CC---------BCSSHHH---H-HT----T
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CC---------ccCcHHH---h-hc----C
Confidence 478999987544443 344444445777764 33 2222222222111 11 1122332 3 11 2
Q ss_pred CeEEEEecCC--CHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHH
Q 009734 108 IPVIMMSSQD--SVSTVYKCMMRGAADYLVKPV--RRNELRNLWQHV 150 (527)
Q Consensus 108 iPVIilSa~~--d~~~~~~al~~GA~DyL~KP~--~~eeL~~~L~~v 150 (527)
+-+|+++... ..+.+..|++.|..=|+-||+ +.++...+++.+
T Consensus 66 ~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a 112 (319)
T 1tlt_A 66 CDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELA 112 (319)
T ss_dssp CSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHH
T ss_pred CCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 3344444433 457888899999988899997 466666555544
No 494
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.39 E-value=2e+02 Score=28.42 Aligned_cols=80 Identities=14% Similarity=0.067 Sum_probs=45.8
Q ss_pred CcCEEEEEecCH-------HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHc-CCCCceEEEEeCCCCCCCH--HHHHH
Q 009734 30 MALRVLLVEADD-------STRQIVTALLRKSSYRVTAV--PDGLKAWEVLKG-RPRNIDLILTEVDLPSISG--FALLT 97 (527)
Q Consensus 30 ~~lrVLLVDDD~-------~~r~~L~~lL~~~Gy~V~~a--~dg~eALe~L~~-~~~~pDLVLlDl~MP~mDG--lelL~ 97 (527)
|+.+++||-.-. .....+...|+..|+++... ....++.+.+++ ....+|+||+- |.|| .+++.
T Consensus 23 ~m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~----GGDGTv~~v~~ 98 (337)
T 2qv7_A 23 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAA----GGDGTLNEVVN 98 (337)
T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE----ECHHHHHHHHH
T ss_pred ccceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE----cCchHHHHHHH
Confidence 345677776421 33456788888888876543 232233333221 11247988874 7788 46666
Q ss_pred HHHhcccCCCCeEEEEec
Q 009734 98 LVMEHEICKNIPVIMMSS 115 (527)
Q Consensus 98 ~Lr~~~~~~~iPVIilSa 115 (527)
.|... ...+||.++-.
T Consensus 99 ~l~~~--~~~~pl~iIP~ 114 (337)
T 2qv7_A 99 GIAEK--PNRPKLGVIPM 114 (337)
T ss_dssp HHTTC--SSCCEEEEEEC
T ss_pred HHHhC--CCCCcEEEecC
Confidence 66332 24678777653
No 495
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=23.38 E-value=5.4e+02 Score=25.33 Aligned_cols=91 Identities=14% Similarity=0.080 Sum_probs=56.8
Q ss_pred EEEEecCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCC
Q 009734 34 VLLVEADDST----RQIVTALLRKSSY--RVTAVPDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKN 107 (527)
Q Consensus 34 VLLVDDD~~~----r~~L~~lL~~~Gy--~V~~a~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~ 107 (527)
|+|.|.+-.. .+.++.+-+..+. -.+.+.+.+++.+.++.. .|.|.+|- ++- +.++++.+. ....
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~aG---aD~I~ld~----~~~-e~l~~~v~~-~~~~ 252 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKAG---ADIIMLDN----FNT-DQMREAVKR-VNGQ 252 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTT---CSEEEESS----CCH-HHHHHHHHT-TCTT
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---CCEEEECC----CCH-HHHHHHHHH-hCCC
Confidence 5555544443 4455555444444 345578888888887642 89999995 333 444444432 2235
Q ss_pred CeEEEEecCCCHHHHHHHHHcCCCEEE
Q 009734 108 IPVIMMSSQDSVSTVYKCMMRGAADYL 134 (527)
Q Consensus 108 iPVIilSa~~d~~~~~~al~~GA~DyL 134 (527)
++|. .|+--+.+.+......|++.+-
T Consensus 253 ~~I~-ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 253 ARLE-VSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp CCEE-ECCCSCHHHHHHHHHTTCSEEE
T ss_pred CeEE-EECCCCHHHHHHHHHcCCCEEE
Confidence 6655 4555689999999999996554
No 496
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=23.32 E-value=2e+02 Score=28.13 Aligned_cols=107 Identities=10% Similarity=0.084 Sum_probs=68.7
Q ss_pred cCEEEEEecCHH-----HHHHHHHHHHhCCCE--------EEEE---CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHH
Q 009734 31 ALRVLLVEADDS-----TRQIVTALLRKSSYR--------VTAV---PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFA 94 (527)
Q Consensus 31 ~lrVLLVDDD~~-----~r~~L~~lL~~~Gy~--------V~~a---~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGle 94 (527)
..+++||-+-+. ....++++++..|+. ++.. -+..+..+++.. .|++|+--. -+.-|+-
T Consensus 215 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~ 289 (413)
T 3oy2_A 215 DAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLC 289 (413)
T ss_dssp TCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHH
T ss_pred CcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcH
Confidence 467787765543 346666766666653 2332 245677777764 588887433 2334677
Q ss_pred HHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCC---------------EE--EeCCCCHHHHHHHHHHHHH
Q 009734 95 LLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAA---------------DY--LVKPVRRNELRNLWQHVWR 152 (527)
Q Consensus 95 lL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~---------------Dy--L~KP~~~eeL~~~L~~v~r 152 (527)
+++.+. ..+|||... ..-..+.+..|.. ++ +..|-+.++|...| .++.
T Consensus 290 ~lEAma-----~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 290 SAEGAV-----LGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHT-----TTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHHH-----cCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 777763 367888632 2334455666666 78 99999999999999 8764
No 497
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.29 E-value=1.8e+02 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=41.9
Q ss_pred cCEEEEEecCHHHHHHHHHHHHhCCC---EEEE-ECCHHHHHHHHHcCCCCceEEEEeC
Q 009734 31 ALRVLLVEADDSTRQIVTALLRKSSY---RVTA-VPDGLKAWEVLKGRPRNIDLILTEV 85 (527)
Q Consensus 31 ~lrVLLVDDD~~~r~~L~~lL~~~Gy---~V~~-a~dg~eALe~L~~~~~~pDLVLlDl 85 (527)
..+|+-||-++...+..+.-++..|+ .+.. ..|..+.+..+......||+||+|.
T Consensus 243 ~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 46899999999999999999988877 4544 6688777665542223599999984
No 498
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.25 E-value=1.4e+02 Score=27.89 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCEEEE-EC---CHH---HHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecC
Q 009734 44 RQIVTALLRKSSYRVTA-VP---DGL---KAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQ 116 (527)
Q Consensus 44 r~~L~~lL~~~Gy~V~~-a~---dg~---eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~ 116 (527)
...+...+++.||.+.. .. +.. +.++.+.... +|.||+--..+. .-.+.++++.+ .++|||++...
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~-~~~~~~~~~~~----~~iPvV~~~~~ 95 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKN--PAGIAISAIDPV-ELTDTINKAVD----AGIPIVLFDSG 95 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHC--CSEEEECCSSTT-TTHHHHHHHHH----TTCCEEEESSC
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhC--CCEEEEcCCCHH-HHHHHHHHHHH----CCCcEEEECCC
Confidence 34556667778998876 32 333 3344444433 898887432221 12356666654 36899988653
No 499
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=23.23 E-value=3.1e+02 Score=26.32 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=49.6
Q ss_pred CEEEEEe-cCHHH---HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHH
Q 009734 32 LRVLLVE-ADDST---RQIVTALLRKSSYRVTA---V----PDGLKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVM 100 (527)
Q Consensus 32 lrVLLVD-DD~~~---r~~L~~lL~~~Gy~V~~---a----~dg~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr 100 (527)
.+|.+|- |+... .+.+++.|++.|..++. . .+....+..+.... ||+||+.. .+.+...+++.++
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~--~dai~~~~--~~~~a~~~~~~~~ 227 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLK--PDCVYAFF--SGGGALKFIKDYA 227 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHC--CSEEEEEC--CTHHHHHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcC--CCEEEEec--CcchHHHHHHHHH
Confidence 4666654 44433 34566677788987642 2 35667777776544 89999843 3456778889988
Q ss_pred hcccCCCCeEEEEe
Q 009734 101 EHEICKNIPVIMMS 114 (527)
Q Consensus 101 ~~~~~~~iPVIilS 114 (527)
+... .+||+...
T Consensus 228 ~~g~--~vp~~~~~ 239 (375)
T 4evq_A 228 AANL--GIPLWGPG 239 (375)
T ss_dssp HTTC--CCCEEEEG
T ss_pred HcCC--CceEEecC
Confidence 7653 57877653
No 500
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=23.19 E-value=1.9e+02 Score=28.67 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred CcCEEEEEe----cCHHHHHHHHHHHHhCCCEEEEECCH-----------------------------------------
Q 009734 30 MALRVLLVE----ADDSTRQIVTALLRKSSYRVTAVPDG----------------------------------------- 64 (527)
Q Consensus 30 ~~lrVLLVD----DD~~~r~~L~~lL~~~Gy~V~~a~dg----------------------------------------- 64 (527)
|+.||||+- -+-.=...|.+.|++.|++|..+.+.
T Consensus 1 M~~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T 3s2u_A 1 MKGNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKS 80 (365)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHH
T ss_pred CCCcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHcCCCCceEEEEeCCCCCCCHHHHHHHHHhcccCCCCeEEEEecCCCHHHHHHHHHcCCCEEEe
Q 009734 65 -LKAWEVLKGRPRNIDLILTEVDLPSISGFALLTLVMEHEICKNIPVIMMSSQDSVSTVYKCMMRGAADYLV 135 (527)
Q Consensus 65 -~eALe~L~~~~~~pDLVLlDl~MP~mDGlelL~~Lr~~~~~~~iPVIilSa~~d~~~~~~al~~GA~DyL~ 135 (527)
.++++++++.. ||+||.+-..+..-+.-..+.+ .+|+|+.-...-.....+.+..-++.++.
T Consensus 81 ~~~~~~~l~~~~--PDvVi~~g~~~s~p~~laA~~~-------~iP~vihe~n~~~G~~nr~l~~~a~~v~~ 143 (365)
T 3s2u_A 81 LFQALRVIRQLR--PVCVLGLGGYVTGPGGLAARLN-------GVPLVIHEQNAVAGTANRSLAPIARRVCE 143 (365)
T ss_dssp HHHHHHHHHHHC--CSEEEECSSSTHHHHHHHHHHT-------TCCEEEEECSSSCCHHHHHHGGGCSEEEE
T ss_pred HHHHHHHHHhcC--CCEEEEcCCcchHHHHHHHHHc-------CCCEEEEecchhhhhHHHhhccccceeee
Done!