BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009735
         (527 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DZ4|A Chain A, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
 pdb|4DZ4|B Chain B, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
 pdb|4DZ4|C Chain C, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
 pdb|4DZ4|D Chain D, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
 pdb|4DZ4|E Chain E, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
 pdb|4DZ4|F Chain F, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
           Burkholderia Thailandensis
          Length = 324

 Score = 32.3 bits (72), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 218 PWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAK 254
           PW          + Y   WF  HHP +I PA++ +A+
Sbjct: 87  PWGFDPFDDLAVIDYGDCWFDAHHPLSIKPAIVEHAR 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,187,027
Number of Sequences: 62578
Number of extensions: 596723
Number of successful extensions: 1173
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 1
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)