Query 009735
Match_columns 527
No_of_seqs 148 out of 187
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 16:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14577 SEO_C: Sieve element 100.0 2.2E-97 5E-102 726.9 18.0 233 295-527 1-235 (235)
2 PF14576 SEO_N: Sieve element 100.0 6.8E-46 1.5E-50 373.4 12.2 127 1-131 160-286 (286)
3 KOG2501 Thioredoxin, nucleored 99.9 1.5E-25 3.2E-30 209.2 11.4 133 150-305 15-152 (157)
4 cd03009 TryX_like_TryX_NRX Try 99.9 3.9E-21 8.4E-26 170.4 13.6 125 154-293 5-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.8 4.3E-20 9.4E-25 171.2 11.5 136 140-291 2-142 (146)
6 cd02964 TryX_like_family Trypa 99.8 1.3E-18 2.8E-23 155.5 13.8 126 151-293 3-132 (132)
7 PF13905 Thioredoxin_8: Thiore 99.6 1.7E-14 3.7E-19 120.8 11.6 91 167-274 1-95 (95)
8 cd02967 mauD Methylamine utili 98.8 2.9E-08 6.2E-13 85.4 9.8 102 155-278 8-112 (114)
9 cd03012 TlpA_like_DipZ_like Tl 98.8 5.9E-08 1.3E-12 86.0 11.9 105 157-277 13-121 (126)
10 cd02968 SCO SCO (an acronym fo 98.8 3.5E-08 7.6E-13 87.9 9.5 111 155-276 10-138 (142)
11 cd02966 TlpA_like_family TlpA- 98.7 6.8E-08 1.5E-12 80.1 9.6 103 155-277 7-113 (116)
12 PF08534 Redoxin: Redoxin; In 98.6 3.1E-07 6.8E-12 82.6 11.2 104 155-278 16-131 (146)
13 PRK03147 thiol-disulfide oxido 98.6 2.1E-07 4.6E-12 85.7 9.4 106 153-277 47-154 (173)
14 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 1.2E-06 2.6E-11 75.9 10.4 103 154-276 12-123 (124)
15 PRK14018 trifunctional thiored 98.4 9.9E-07 2.1E-11 97.2 10.9 108 154-277 45-155 (521)
16 cd03010 TlpA_like_DsbE TlpA-li 98.4 1.2E-06 2.5E-11 77.3 9.1 97 158-277 16-116 (127)
17 cd03015 PRX_Typ2cys Peroxiredo 98.4 2.9E-06 6.4E-11 79.5 10.7 105 155-278 17-136 (173)
18 TIGR02661 MauD methylamine deh 98.3 4.1E-06 8.9E-11 80.2 11.2 105 148-277 51-162 (189)
19 cd02969 PRX_like1 Peroxiredoxi 98.3 2.9E-06 6.3E-11 79.0 9.6 111 154-278 11-126 (171)
20 PTZ00256 glutathione peroxidas 98.3 1.5E-05 3.3E-10 75.9 13.8 117 154-277 27-163 (183)
21 cd03017 PRX_BCP Peroxiredoxin 98.3 3.8E-06 8.2E-11 74.6 8.7 103 155-277 11-125 (140)
22 cd02971 PRX_family Peroxiredox 98.3 1.1E-05 2.4E-10 71.5 11.5 106 154-278 9-126 (140)
23 TIGR02540 gpx7 putative glutat 98.2 1.5E-05 3.2E-10 73.3 12.2 113 155-277 10-135 (153)
24 PRK15412 thiol:disulfide inter 98.2 5.5E-06 1.2E-10 78.9 9.4 100 157-278 57-159 (185)
25 PLN02412 probable glutathione 98.2 1.3E-05 2.9E-10 75.3 11.7 118 154-278 16-147 (167)
26 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 4.6E-06 1E-10 72.6 7.7 96 156-275 9-106 (123)
27 PLN02919 haloacid dehalogenase 98.2 1.3E-05 2.7E-10 95.1 13.1 114 148-277 396-518 (1057)
28 KOG2501 Thioredoxin, nucleored 98.2 1E-06 2.2E-11 83.3 2.6 47 325-373 31-83 (157)
29 cd03018 PRX_AhpE_like Peroxire 98.1 1.4E-05 3.1E-10 71.8 9.5 106 154-277 14-129 (149)
30 cd00340 GSH_Peroxidase Glutath 98.1 4.4E-06 9.5E-11 76.8 6.2 51 155-212 10-62 (152)
31 TIGR00385 dsbE periplasmic pro 98.1 1.2E-05 2.6E-10 75.7 9.2 97 159-277 54-153 (173)
32 PRK09437 bcp thioredoxin-depen 98.1 2.4E-05 5.2E-10 71.4 11.0 104 154-277 17-135 (154)
33 PLN02399 phospholipid hydroper 98.1 3.5E-05 7.7E-10 77.3 12.0 118 154-277 86-216 (236)
34 cd03014 PRX_Atyp2cys Peroxired 98.0 4.4E-05 9.6E-10 68.6 9.4 104 155-278 14-126 (143)
35 PRK10382 alkyl hydroperoxide r 98.0 4E-05 8.6E-10 74.1 9.6 106 156-277 20-134 (187)
36 PTZ00056 glutathione peroxidas 98.0 7.9E-05 1.7E-09 72.4 11.7 114 155-277 27-160 (199)
37 TIGR03137 AhpC peroxiredoxin. 98.0 4.8E-05 1E-09 72.8 10.0 101 159-278 23-135 (187)
38 cd02970 PRX_like2 Peroxiredoxi 97.9 0.00014 3E-09 64.8 11.2 102 155-276 10-144 (149)
39 PTZ00253 tryparedoxin peroxida 97.9 9.3E-05 2E-09 71.4 10.6 108 155-276 24-141 (199)
40 TIGR02740 TraF-like TraF-like 97.9 3.7E-05 8E-10 78.3 7.8 90 156-278 155-246 (271)
41 cd02950 TxlA TRX-like protein 97.8 9.4E-05 2E-09 68.1 8.7 73 165-277 18-92 (142)
42 PRK13190 putative peroxiredoxi 97.8 0.00016 3.4E-09 70.3 10.3 110 149-277 8-132 (202)
43 PRK00522 tpx lipid hydroperoxi 97.8 0.00013 2.7E-09 68.6 8.9 114 146-279 21-148 (167)
44 PRK13728 conjugal transfer pro 97.7 0.00012 2.5E-09 71.0 8.1 94 148-277 54-152 (181)
45 TIGR02738 TrbB type-F conjugat 97.6 0.00041 8.9E-09 65.2 10.2 80 166-276 49-133 (153)
46 PF02630 SCO1-SenC: SCO1/SenC; 97.6 0.0005 1.1E-08 65.4 10.5 109 155-276 40-169 (174)
47 PF13098 Thioredoxin_2: Thiore 97.6 0.00021 4.5E-09 61.3 7.1 92 166-276 4-97 (112)
48 cd02955 SSP411 TRX domain, SSP 97.6 0.00022 4.8E-09 64.9 7.5 79 166-278 14-97 (124)
49 cd02951 SoxW SoxW family; SoxW 97.5 0.00027 5.8E-09 62.5 6.4 83 166-277 12-101 (125)
50 cd02953 DsbDgamma DsbD gamma f 97.5 0.00063 1.4E-08 58.1 8.4 72 166-275 10-87 (104)
51 cd03016 PRX_1cys Peroxiredoxin 97.4 0.00064 1.4E-08 66.0 9.0 104 159-277 16-132 (203)
52 PTZ00137 2-Cys peroxiredoxin; 97.4 0.00058 1.3E-08 69.6 8.9 155 105-278 35-204 (261)
53 cd02985 TRX_CDSP32 TRX family, 97.3 0.0014 3.1E-08 56.5 8.4 70 165-275 13-84 (103)
54 TIGR01626 ytfJ_HI0045 conserve 97.2 0.001 2.2E-08 64.6 7.9 104 153-277 45-162 (184)
55 PRK15000 peroxidase; Provision 97.2 0.0028 6.1E-08 61.8 10.9 93 166-277 33-140 (200)
56 cd02956 ybbN ybbN protein fami 97.1 0.0027 5.8E-08 53.1 8.5 67 166-275 11-79 (96)
57 cd02959 ERp19 Endoplasmic reti 97.1 0.00099 2.2E-08 59.5 6.0 20 165-184 17-36 (117)
58 PRK13191 putative peroxiredoxi 97.1 0.0031 6.7E-08 62.2 9.6 112 146-277 10-139 (215)
59 PRK13599 putative peroxiredoxi 97.0 0.0023 4.9E-08 63.2 8.3 109 155-277 16-134 (215)
60 cd02999 PDI_a_ERp44_like PDIa 97.0 0.0014 3.1E-08 56.6 5.8 70 163-275 14-85 (100)
61 PRK10606 btuE putative glutath 97.0 0.014 3.1E-07 56.5 13.2 124 155-294 13-170 (183)
62 cd02949 TRX_NTR TRX domain, no 97.0 0.0042 9E-08 52.7 8.2 67 166-275 12-80 (97)
63 PRK13189 peroxiredoxin; Provis 96.9 0.0065 1.4E-07 60.2 10.5 104 159-277 26-141 (222)
64 PRK10996 thioredoxin 2; Provis 96.8 0.0058 1.2E-07 56.0 8.5 69 166-277 51-121 (139)
65 cd03005 PDI_a_ERp46 PDIa famil 96.8 0.0039 8.5E-08 52.2 6.7 67 169-275 18-86 (102)
66 PTZ00051 thioredoxin; Provisio 96.7 0.0048 1E-07 51.6 6.6 67 166-276 17-85 (98)
67 cd02948 TRX_NDPK TRX domain, T 96.6 0.011 2.5E-07 50.8 8.4 67 166-275 16-84 (102)
68 cd02952 TRP14_like Human TRX-r 96.6 0.0074 1.6E-07 54.8 7.4 78 166-278 20-107 (119)
69 cd02963 TRX_DnaJ TRX domain, D 96.5 0.012 2.6E-07 51.6 7.8 72 164-277 21-94 (111)
70 TIGR01126 pdi_dom protein disu 96.5 0.016 3.4E-07 48.2 8.1 69 166-274 12-82 (102)
71 cd03000 PDI_a_TMX3 PDIa family 96.4 0.017 3.7E-07 49.4 8.0 66 165-269 13-80 (104)
72 PRK09381 trxA thioredoxin; Pro 96.3 0.018 3.9E-07 49.4 8.0 67 167-276 21-89 (109)
73 PHA02278 thioredoxin-like prot 96.3 0.0091 2E-07 52.5 6.1 71 166-275 13-85 (103)
74 PF13905 Thioredoxin_8: Thiore 96.3 0.0085 1.8E-07 50.0 5.4 51 327-377 1-54 (95)
75 cd03002 PDI_a_MPD1_like PDI fa 96.2 0.018 4E-07 48.9 7.3 68 166-273 17-86 (109)
76 cd02984 TRX_PICOT TRX domain, 96.2 0.019 4.2E-07 47.8 7.2 67 167-276 14-82 (97)
77 cd02993 PDI_a_APS_reductase PD 96.1 0.03 6.6E-07 48.6 8.1 69 166-273 20-90 (109)
78 cd02994 PDI_a_TMX PDIa family, 96.0 0.038 8.2E-07 46.7 8.0 67 165-274 15-83 (101)
79 TIGR01068 thioredoxin thioredo 95.8 0.05 1.1E-06 44.8 7.9 66 167-275 14-81 (101)
80 cd02960 AGR Anterior Gradient 95.8 0.019 4.1E-07 53.1 5.8 92 166-304 22-118 (130)
81 cd03003 PDI_a_ERdj5_N PDIa fam 95.7 0.067 1.5E-06 45.3 8.4 67 165-274 16-84 (101)
82 PRK00293 dipZ thiol:disulfide 95.6 0.026 5.7E-07 63.3 7.4 72 166-276 473-549 (571)
83 cd02998 PDI_a_ERp38 PDIa famil 95.5 0.045 9.8E-07 45.6 6.7 68 167-273 18-87 (105)
84 cd02996 PDI_a_ERp44 PDIa famil 95.5 0.047 1E-06 46.9 6.9 71 167-274 18-90 (108)
85 cd02961 PDI_a_family Protein D 95.4 0.1 2.2E-06 42.4 8.3 67 166-272 14-82 (101)
86 cd03008 TryX_like_RdCVF Trypar 95.4 0.026 5.6E-07 52.9 5.2 110 326-456 24-142 (146)
87 TIGR02187 GlrX_arch Glutaredox 95.3 0.72 1.6E-05 45.1 15.3 150 167-373 20-179 (215)
88 cd02954 DIM1 Dim1 family; Dim1 95.2 0.059 1.3E-06 48.8 6.8 71 166-277 13-83 (114)
89 cd02975 PfPDO_like_N Pyrococcu 95.2 0.089 1.9E-06 46.5 7.7 62 167-271 22-85 (113)
90 TIGR01295 PedC_BrcD bacterioci 95.1 0.084 1.8E-06 47.6 7.5 38 166-212 22-61 (122)
91 COG1225 Bcp Peroxiredoxin [Pos 95.1 0.15 3.2E-06 48.8 9.3 103 154-276 17-134 (157)
92 PTZ00102 disulphide isomerase; 95.0 0.071 1.5E-06 57.1 7.7 69 166-274 374-444 (477)
93 cd03001 PDI_a_P5 PDIa family, 94.9 0.13 2.8E-06 43.0 7.7 63 167-271 18-82 (103)
94 cd02997 PDI_a_PDIR PDIa family 94.9 0.11 2.4E-06 43.4 7.3 71 166-275 16-88 (104)
95 cd03004 PDI_a_ERdj5_C PDIa fam 94.6 0.23 5E-06 42.1 8.4 66 167-274 19-86 (104)
96 COG1999 Uncharacterized protei 94.3 0.31 6.7E-06 48.0 9.9 112 153-276 53-185 (207)
97 cd02947 TRX_family TRX family; 94.2 0.19 4.2E-06 39.7 6.9 64 168-273 11-74 (93)
98 PF00085 Thioredoxin: Thioredo 94.2 0.09 1.9E-06 43.6 5.0 67 167-275 17-85 (103)
99 cd02957 Phd_like Phosducin (Ph 94.0 0.47 1E-05 41.4 9.4 87 167-300 24-110 (113)
100 cd02992 PDI_a_QSOX PDIa family 93.9 0.38 8.2E-06 42.5 8.7 76 167-280 19-96 (114)
101 cd02958 UAS UAS family; UAS is 93.9 0.4 8.7E-06 41.9 8.8 73 165-277 15-93 (114)
102 TIGR01295 PedC_BrcD bacterioci 93.7 0.099 2.1E-06 47.2 4.7 44 323-368 19-63 (122)
103 TIGR00411 redox_disulf_1 small 93.4 0.42 9.2E-06 38.4 7.6 35 171-212 3-39 (82)
104 PTZ00443 Thioredoxin domain-co 93.1 0.31 6.8E-06 48.8 7.6 66 167-275 52-119 (224)
105 cd02989 Phd_like_TxnDC9 Phosdu 92.8 0.28 6.1E-06 43.4 6.0 86 167-300 22-110 (113)
106 PTZ00062 glutaredoxin; Provisi 92.5 0.22 4.8E-06 49.3 5.5 127 168-367 18-153 (204)
107 cd02962 TMX2 TMX2 family; comp 92.4 0.39 8.5E-06 45.3 6.8 29 166-194 46-76 (152)
108 cd03065 PDI_b_Calsequestrin_N 92.3 0.18 3.9E-06 45.9 4.2 91 149-276 2-101 (120)
109 cd03013 PRX5_like Peroxiredoxi 92.0 2.1 4.5E-05 40.0 11.1 103 156-277 17-136 (155)
110 cd02982 PDI_b'_family Protein 91.8 1 2.2E-05 37.8 8.1 62 167-270 12-77 (103)
111 cd03026 AhpF_NTD_C TRX-GRX-lik 91.5 0.97 2.1E-05 38.7 7.7 72 162-277 7-78 (89)
112 cd02995 PDI_a_PDI_a'_C PDIa fa 91.2 1.1 2.4E-05 37.3 7.6 29 167-195 18-48 (104)
113 KOG0907 Thioredoxin [Posttrans 91.1 0.69 1.5E-05 41.2 6.6 73 167-280 21-96 (106)
114 smart00594 UAS UAS domain. 91.0 0.87 1.9E-05 40.7 7.2 68 165-272 25-97 (122)
115 PF14595 Thioredoxin_9: Thiore 90.6 0.76 1.7E-05 42.1 6.6 73 164-276 38-112 (129)
116 cd02987 Phd_like_Phd Phosducin 90.5 0.88 1.9E-05 43.6 7.2 88 167-302 83-171 (175)
117 cd01659 TRX_superfamily Thiore 90.4 1.5 3.3E-05 30.9 6.8 61 171-271 1-63 (69)
118 cd02964 TryX_like_family Trypa 90.4 0.55 1.2E-05 41.9 5.3 50 326-377 16-71 (132)
119 cd02965 HyaE HyaE family; HyaE 90.3 0.98 2.1E-05 40.8 6.8 69 166-277 26-98 (111)
120 cd03006 PDI_a_EFP1_N PDIa fami 90.0 1.6 3.4E-05 39.1 7.9 67 165-273 27-95 (113)
121 TIGR01130 ER_PDI_fam protein d 89.5 1.3 2.9E-05 46.7 8.2 42 166-211 363-406 (462)
122 PTZ00102 disulphide isomerase; 89.4 0.76 1.6E-05 49.3 6.5 70 166-274 48-119 (477)
123 TIGR01130 ER_PDI_fam protein d 89.3 1.1 2.3E-05 47.4 7.3 68 166-272 17-86 (462)
124 COG0450 AhpC Peroxiredoxin [Po 88.9 2.2 4.8E-05 42.2 8.6 105 158-276 24-138 (194)
125 cd03009 TryX_like_TryX_NRX Try 88.3 0.9 2E-05 40.2 5.1 59 316-376 9-71 (131)
126 PRK11657 dsbG disulfide isomer 87.1 4.2 9.1E-05 41.2 9.7 102 166-274 116-232 (251)
127 TIGR00424 APS_reduc 5'-adenyly 86.0 2.5 5.5E-05 46.8 8.0 68 166-272 370-439 (463)
128 KOG2792 Putative cytochrome C 85.3 7 0.00015 40.6 10.1 58 154-215 126-186 (280)
129 TIGR02187 GlrX_arch Glutaredox 85.2 3.3 7.2E-05 40.4 7.7 30 164-195 130-159 (215)
130 TIGR00412 redox_disulf_2 small 85.2 4.7 0.0001 33.1 7.4 17 256-275 44-60 (76)
131 PF00255 GSHPx: Glutathione pe 84.1 9.9 0.00021 34.2 9.5 53 155-213 9-62 (108)
132 KOG0852 Alkyl hydroperoxide re 82.2 2.1 4.5E-05 42.1 4.6 126 149-301 16-170 (196)
133 PF13899 Thioredoxin_7: Thiore 81.8 7.4 0.00016 32.0 7.3 21 165-185 15-35 (82)
134 cd02986 DLP Dim1 family, Dim1- 81.7 4.2 9E-05 37.1 6.2 28 166-195 13-40 (114)
135 PLN02309 5'-adenylylsulfate re 80.9 5.7 0.00012 44.0 8.1 68 166-272 364-433 (457)
136 cd02953 DsbDgamma DsbD gamma f 80.8 4.7 0.0001 34.2 6.0 44 324-367 8-55 (104)
137 cd02955 SSP411 TRX domain, SSP 80.2 4.4 9.6E-05 37.0 5.9 45 324-368 12-60 (124)
138 smart00834 CxxC_CXXC_SSSS Puta 79.9 1.1 2.3E-05 32.5 1.5 30 490-520 10-40 (41)
139 cd02988 Phd_like_VIAF Phosduci 76.3 8.7 0.00019 37.5 7.1 86 167-302 102-188 (192)
140 PHA02125 thioredoxin-like prot 76.3 11 0.00024 30.6 6.7 15 252-266 37-51 (75)
141 KOG0910 Thioredoxin-like prote 75.9 5.4 0.00012 38.1 5.3 29 167-195 61-91 (150)
142 cd02950 TxlA TRX-like protein 74.9 6.4 0.00014 36.2 5.4 45 324-368 17-62 (142)
143 cd03010 TlpA_like_DsbE TlpA-li 74.0 6.9 0.00015 34.2 5.2 50 326-377 24-74 (127)
144 cd02949 TRX_NTR TRX domain, no 73.0 12 0.00027 31.4 6.4 45 325-369 11-56 (97)
145 PF00085 Thioredoxin: Thioredo 72.8 8.5 0.00018 31.6 5.2 47 324-370 13-61 (103)
146 PF09723 Zn-ribbon_8: Zinc rib 72.5 2.2 4.7E-05 31.9 1.4 30 490-520 10-41 (42)
147 PF06110 DUF953: Eukaryotic pr 72.3 17 0.00037 33.3 7.4 79 166-277 18-105 (119)
148 PRK10996 thioredoxin 2; Provis 71.3 7.8 0.00017 35.4 5.1 46 323-368 48-94 (139)
149 PF13728 TraF: F plasmid trans 70.0 16 0.00034 36.4 7.3 87 160-279 113-201 (215)
150 cd02967 mauD Methylamine utili 69.7 9.8 0.00021 32.4 5.1 51 326-377 20-71 (114)
151 cd02947 TRX_family TRX family; 69.2 13 0.00028 29.0 5.4 44 324-368 7-51 (93)
152 PLN00410 U5 snRNP protein, DIM 69.1 15 0.00032 34.7 6.5 29 166-194 22-52 (142)
153 COG3118 Thioredoxin domain-con 68.2 12 0.00026 39.5 6.2 87 161-289 37-132 (304)
154 cd02961 PDI_a_family Protein D 68.0 15 0.00033 29.4 5.7 44 324-367 12-58 (101)
155 cd03003 PDI_a_ERdj5_N PDIa fam 67.7 12 0.00026 31.5 5.1 46 324-369 15-61 (101)
156 PF13899 Thioredoxin_7: Thiore 67.1 7.3 0.00016 32.0 3.6 49 324-372 14-66 (82)
157 cd03020 DsbA_DsbC_DsbG DsbA fa 66.7 53 0.0012 31.4 10.0 99 167-275 77-184 (197)
158 PRK03147 thiol-disulfide oxido 66.6 18 0.00039 33.2 6.5 52 326-377 60-113 (173)
159 cd02966 TlpA_like_family TlpA- 66.3 15 0.00032 30.0 5.3 54 326-379 18-74 (116)
160 cd02956 ybbN ybbN protein fami 66.1 14 0.0003 30.6 5.1 44 326-369 11-55 (96)
161 PF13778 DUF4174: Domain of un 65.8 56 0.0012 29.5 9.3 92 161-277 2-94 (118)
162 cd02948 TRX_NDPK TRX domain, T 65.1 14 0.0003 31.6 5.1 45 323-367 13-59 (102)
163 cd02973 TRX_GRX_like Thioredox 64.9 24 0.00053 27.3 6.1 22 172-195 4-25 (67)
164 PF08209 Sgf11: Sgf11 (transcr 62.6 3.8 8.2E-05 29.7 0.9 13 505-517 3-15 (33)
165 PF13098 Thioredoxin_2: Thiore 62.2 11 0.00023 32.2 3.8 49 325-373 3-55 (112)
166 TIGR02180 GRX_euk Glutaredoxin 61.8 13 0.00029 29.7 4.2 57 172-267 2-60 (84)
167 COG2143 Thioredoxin-related pr 61.6 15 0.00033 35.8 5.0 89 165-275 40-129 (182)
168 cd03001 PDI_a_P5 PDIa family, 61.5 24 0.00052 29.2 5.8 43 326-368 17-60 (103)
169 COG0386 BtuE Glutathione perox 60.2 11 0.00025 36.3 3.9 51 154-212 12-65 (162)
170 TIGR00385 dsbE periplasmic pro 59.7 23 0.0005 33.3 6.0 48 325-375 61-109 (173)
171 TIGR02739 TraF type-F conjugat 58.5 15 0.00033 37.8 4.8 88 160-281 143-233 (256)
172 TIGR01068 thioredoxin thioredo 58.5 17 0.00037 29.6 4.3 44 326-369 13-57 (101)
173 PF02591 DUF164: Putative zinc 58.4 5 0.00011 31.5 1.1 27 490-516 26-56 (56)
174 TIGR02605 CxxC_CxxC_SSSS putat 58.1 7.2 0.00015 29.8 1.9 31 490-521 10-42 (52)
175 cd02951 SoxW SoxW family; SoxW 56.9 16 0.00035 32.0 4.2 47 323-369 9-60 (125)
176 PHA02278 thioredoxin-like prot 55.9 18 0.00038 31.8 4.2 44 324-367 11-55 (103)
177 cd02954 DIM1 Dim1 family; Dim1 55.7 25 0.00055 31.9 5.3 44 326-369 13-57 (114)
178 PRK10877 protein disulfide iso 53.8 98 0.0021 31.1 9.6 97 166-275 106-214 (232)
179 KOG0191 Thioredoxin/protein di 53.8 63 0.0014 34.4 8.8 153 166-367 46-205 (383)
180 cd03012 TlpA_like_DipZ_like Tl 53.1 30 0.00066 30.4 5.3 46 319-366 17-64 (126)
181 cd02968 SCO SCO (an acronym fo 51.7 21 0.00045 31.5 4.0 44 326-369 21-70 (142)
182 cd03004 PDI_a_ERdj5_C PDIa fam 50.7 34 0.00073 28.8 5.0 43 326-368 18-61 (104)
183 TIGR01126 pdi_dom protein disu 50.3 24 0.00053 28.9 4.0 44 324-367 10-56 (102)
184 cd03002 PDI_a_MPD1_like PDI fa 50.0 27 0.00059 29.4 4.3 43 326-368 17-60 (109)
185 cd02959 ERp19 Endoplasmic reti 49.8 23 0.0005 31.5 4.0 43 324-366 16-61 (117)
186 PRK15412 thiol:disulfide inter 49.7 41 0.00089 32.0 6.0 49 326-377 67-116 (185)
187 COG4481 Uncharacterized protei 49.4 9.2 0.0002 30.9 1.2 29 485-515 13-43 (60)
188 cd02975 PfPDO_like_N Pyrococcu 49.3 39 0.00085 29.7 5.4 45 324-369 19-64 (113)
189 PRK13703 conjugal pilus assemb 49.3 34 0.00074 35.1 5.6 88 161-281 137-226 (248)
190 PF13408 Zn_ribbon_recom: Reco 48.7 8.1 0.00017 29.6 0.8 14 505-518 4-17 (58)
191 COG0526 TrxA Thiol-disulfide i 48.3 48 0.001 26.1 5.3 46 160-212 25-72 (127)
192 cd02984 TRX_PICOT TRX domain, 48.1 62 0.0013 26.5 6.2 41 327-367 14-55 (97)
193 cd02985 TRX_CDSP32 TRX family, 47.7 28 0.00061 29.8 4.1 42 326-368 14-56 (103)
194 PRK09381 trxA thioredoxin; Pro 46.5 39 0.00085 28.7 4.8 45 325-369 19-64 (109)
195 TIGR02196 GlrX_YruB Glutaredox 46.5 42 0.00091 25.5 4.6 13 172-184 3-15 (74)
196 cd02995 PDI_a_PDI_a'_C PDIa fa 46.4 49 0.0011 27.2 5.3 43 326-368 17-62 (104)
197 cd03000 PDI_a_TMX3 PDIa family 46.3 31 0.00068 29.2 4.2 51 316-367 5-59 (104)
198 cd02972 DsbA_family DsbA famil 46.0 1.5E+02 0.0032 23.4 8.1 86 172-269 2-91 (98)
199 PHA03050 glutaredoxin; Provisi 45.9 32 0.00069 30.6 4.2 35 171-211 15-49 (108)
200 PTZ00051 thioredoxin; Provisio 45.7 39 0.00085 27.9 4.6 31 324-354 15-46 (98)
201 TIGR00411 redox_disulf_1 small 45.3 68 0.0015 25.4 5.8 45 329-373 2-46 (82)
202 cd03011 TlpA_like_ScsD_MtbDsbE 45.1 30 0.00065 29.8 3.9 49 325-377 18-68 (123)
203 cd03005 PDI_a_ERp46 PDIa famil 44.8 34 0.00073 28.3 4.1 44 324-368 14-61 (102)
204 PF13913 zf-C2HC_2: zinc-finge 44.1 10 0.00023 25.4 0.7 13 505-517 1-13 (25)
205 cd02996 PDI_a_ERp44 PDIa famil 43.5 42 0.00092 28.6 4.6 47 323-369 14-67 (108)
206 cd02999 PDI_a_ERp44_like PDIa 43.4 41 0.00088 28.9 4.5 39 326-367 17-58 (100)
207 TIGR01206 lysW lysine biosynth 42.6 22 0.00049 28.4 2.5 28 490-519 7-35 (54)
208 TIGR02200 GlrX_actino Glutared 42.2 1.6E+02 0.0035 22.8 8.0 13 172-184 3-15 (77)
209 cd02963 TRX_DnaJ TRX domain, D 41.9 46 0.00099 29.0 4.6 43 326-368 23-67 (111)
210 PF03190 Thioredox_DsbH: Prote 41.4 52 0.0011 31.8 5.2 102 166-305 36-147 (163)
211 cd03006 PDI_a_EFP1_N PDIa fami 41.3 56 0.0012 29.2 5.1 45 324-368 26-71 (113)
212 COG3024 Uncharacterized protei 40.0 13 0.00027 31.0 0.7 16 503-518 4-19 (65)
213 TIGR02740 TraF-like TraF-like 39.9 32 0.00068 35.4 3.8 41 326-368 165-206 (271)
214 cd02960 AGR Anterior Gradient 39.8 52 0.0011 30.6 4.8 41 324-364 20-64 (130)
215 TIGR02661 MauD methylamine deh 39.7 48 0.001 31.8 4.8 48 325-375 72-120 (189)
216 PRK02935 hypothetical protein; 38.3 17 0.00038 32.9 1.4 21 506-526 70-91 (110)
217 PF07191 zinc-ribbons_6: zinc- 38.1 22 0.00047 30.0 1.8 25 502-526 26-55 (70)
218 cd02998 PDI_a_ERp38 PDIa famil 36.5 91 0.002 25.6 5.4 43 326-368 17-62 (105)
219 PF14026 DUF4242: Protein of u 36.5 56 0.0012 27.6 4.1 58 293-362 12-74 (77)
220 cd03419 GRX_GRXh_1_2_like Glut 35.9 89 0.0019 24.9 5.1 32 172-212 3-34 (82)
221 PF14369 zf-RING_3: zinc-finge 35.3 28 0.0006 25.4 1.8 24 489-514 6-29 (35)
222 PF10601 zf-LITAF-like: LITAF- 35.2 31 0.00068 28.3 2.3 23 501-523 2-24 (73)
223 cd02989 Phd_like_TxnDC9 Phosdu 33.8 68 0.0015 28.3 4.4 45 324-369 19-64 (113)
224 TIGR00467 lysS_arch lysyl-tRNA 33.7 26 0.00056 39.6 2.1 26 500-525 162-196 (515)
225 PF13248 zf-ribbon_3: zinc-rib 33.5 18 0.00039 24.4 0.5 13 506-518 2-14 (26)
226 COG4545 Glutaredoxin-related p 33.3 1.2E+02 0.0026 26.4 5.5 74 171-277 5-78 (85)
227 PRK11200 grxA glutaredoxin 1; 33.3 94 0.002 25.6 5.0 34 171-212 3-38 (85)
228 PF11023 DUF2614: Protein of u 32.7 18 0.00039 33.2 0.5 22 505-526 68-90 (114)
229 TIGR00100 hypA hydrogenase nic 32.4 41 0.00089 30.4 2.8 44 477-524 43-89 (115)
230 PRK07218 replication factor A; 32.2 18 0.0004 39.8 0.6 11 297-307 164-174 (423)
231 PF04371 PAD_porph: Porphyromo 32.0 1.7E+02 0.0037 31.0 7.8 111 165-287 207-319 (329)
232 cd02997 PDI_a_PDIR PDIa family 31.7 74 0.0016 26.2 4.1 35 321-355 11-46 (104)
233 KOG1088 Uncharacterized conser 31.4 23 0.0005 32.7 1.0 15 502-516 94-108 (124)
234 cd02965 HyaE HyaE family; HyaE 31.3 82 0.0018 28.5 4.6 48 322-369 22-72 (111)
235 PF01396 zf-C4_Topoisom: Topoi 31.0 21 0.00045 26.4 0.6 12 507-518 2-13 (39)
236 PRK00398 rpoP DNA-directed RNA 30.9 37 0.00079 25.6 1.9 12 506-517 21-32 (46)
237 PF09237 GAGA: GAGA factor; I 30.6 21 0.00045 28.7 0.5 14 505-518 23-36 (54)
238 KOG3425 Uncharacterized conser 30.3 79 0.0017 29.6 4.3 44 324-367 22-76 (128)
239 PF04423 Rad50_zn_hook: Rad50 29.8 21 0.00046 27.7 0.5 10 508-517 22-31 (54)
240 PF13453 zf-TFIIB: Transcripti 29.7 25 0.00055 25.9 0.8 12 508-519 1-12 (41)
241 PRK00750 lysK lysyl-tRNA synth 29.3 34 0.00075 38.4 2.2 27 500-526 169-206 (510)
242 KOG1651 Glutathione peroxidase 29.1 86 0.0019 30.7 4.5 53 154-212 21-75 (171)
243 cd02993 PDI_a_APS_reductase PD 29.0 1.2E+02 0.0026 26.1 5.1 43 325-367 19-63 (109)
244 PF13462 Thioredoxin_4: Thiore 28.7 1.9E+02 0.0042 25.8 6.6 46 162-212 7-54 (162)
245 PRK12775 putative trifunctiona 28.5 27 0.00057 42.4 1.2 22 506-527 796-817 (1006)
246 PF10013 DUF2256: Uncharacteri 28.3 25 0.00055 26.9 0.6 11 507-517 9-19 (42)
247 PF06073 DUF934: Bacterial pro 27.0 98 0.0021 28.2 4.2 77 220-302 6-85 (110)
248 COG1579 Zn-ribbon protein, pos 26.9 24 0.00052 36.2 0.4 11 505-515 220-230 (239)
249 cd03418 GRX_GRXb_1_3_like Glut 26.9 1.2E+02 0.0026 23.9 4.3 28 172-210 3-32 (75)
250 PRK00564 hypA hydrogenase nick 26.8 58 0.0013 29.5 2.8 44 476-523 42-89 (117)
251 PF14595 Thioredoxin_9: Thiore 26.6 79 0.0017 29.0 3.7 43 327-372 41-86 (129)
252 smart00714 LITAF Possible memb 26.1 49 0.0011 26.7 2.0 20 504-523 1-20 (67)
253 cd02962 TMX2 TMX2 family; comp 25.2 1.5E+02 0.0032 28.1 5.3 45 326-370 46-92 (152)
254 PF13717 zinc_ribbon_4: zinc-r 25.2 40 0.00087 24.5 1.2 20 494-515 12-34 (36)
255 PF00462 Glutaredoxin: Glutare 25.1 1.6E+02 0.0035 22.4 4.7 34 330-367 1-34 (60)
256 PF03119 DNA_ligase_ZBD: NAD-d 25.1 33 0.00072 23.7 0.7 17 508-524 1-20 (28)
257 TIGR03143 AhpF_homolog putativ 25.0 7.8E+02 0.017 27.7 11.8 158 182-367 352-518 (555)
258 PF04508 Pox_A_type_inc: Viral 24.6 91 0.002 21.1 2.6 17 92-108 6-22 (23)
259 PF03884 DUF329: Domain of unk 24.5 24 0.00052 28.6 -0.1 14 505-518 1-14 (57)
260 TIGR02263 benz_CoA_red_C benzo 24.1 1.9E+02 0.0042 31.1 6.6 104 182-293 211-327 (380)
261 PLN00410 U5 snRNP protein, DIM 24.0 2.4E+02 0.0052 26.6 6.4 47 326-372 22-69 (142)
262 smart00661 RPOL9 RNA polymeras 23.8 86 0.0019 23.6 2.9 29 490-519 5-33 (52)
263 KOG1020 Sister chromatid cohes 23.8 2E+02 0.0043 36.9 7.1 122 7-158 1092-1216(1692)
264 cd00419 Ferrochelatase_C Ferro 23.2 2.7E+02 0.0059 25.6 6.6 46 167-212 16-68 (135)
265 TIGR01031 rpmF_bact ribosomal 23.1 47 0.001 26.5 1.3 17 502-518 22-38 (55)
266 PF13240 zinc_ribbon_2: zinc-r 23.0 37 0.00079 22.5 0.6 10 509-518 2-11 (23)
267 TIGR02098 MJ0042_CXXC MJ0042 f 22.6 41 0.00089 24.1 0.8 13 506-518 25-37 (38)
268 PRK09437 bcp thioredoxin-depen 22.4 1.8E+02 0.0038 26.3 5.1 51 326-377 29-82 (154)
269 PF14149 YhfH: YhfH-like prote 22.3 19 0.0004 26.9 -1.0 13 507-519 14-26 (37)
270 cd03017 PRX_BCP Peroxiredoxin 22.1 2.1E+02 0.0045 25.0 5.4 51 326-377 22-75 (140)
271 COG3118 Thioredoxin domain-con 21.5 1.2E+02 0.0026 32.3 4.2 43 326-368 42-85 (304)
272 TIGR02181 GRX_bact Glutaredoxi 21.2 1.7E+02 0.0037 23.4 4.3 12 172-183 2-13 (79)
273 cd03015 PRX_Typ2cys Peroxiredo 21.0 1.7E+02 0.0037 27.3 4.9 44 326-369 28-74 (173)
274 cd02982 PDI_b'_family Protein 21.0 1.8E+02 0.0039 24.0 4.6 42 327-368 12-54 (103)
275 PF07754 DUF1610: Domain of un 20.6 45 0.00097 22.7 0.6 10 505-514 15-24 (24)
276 PF14803 Nudix_N_2: Nudix N-te 20.6 58 0.0013 23.7 1.3 22 494-515 10-31 (34)
277 smart00188 IL10 Interleukin-10 20.6 1.1E+02 0.0023 29.1 3.3 43 83-129 71-113 (137)
278 PF03671 Ufm1: Ubiquitin fold 20.4 2.4E+02 0.0052 24.3 5.0 42 247-289 29-72 (76)
279 KOG2796 Uncharacterized conser 20.1 1.2E+02 0.0027 32.2 4.0 90 32-142 206-295 (366)
280 KOG0190 Protein disulfide isom 20.1 94 0.002 35.1 3.3 60 148-212 356-424 (493)
No 1
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=2.2e-97 Score=726.90 Aligned_cols=233 Identities=56% Similarity=1.083 Sum_probs=230.2
Q ss_pred hhhHHHhhhhcccceeeccccCCCCccccccCceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhh
Q 009735 295 VAREEALWKEETWRIDLLADSVDPVIPTWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKAR 374 (527)
Q Consensus 295 ~~r~e~L~~~e~w~lelL~d~id~~I~~~i~egK~I~LYgg~d~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~ 374 (527)
++|+++||++|+|+|+||+|++||.|.+||+||||||||||+|++|||+||.++++||++|++++||+||||+||+|+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCCCcchhhhhHHhhhhhhhhhhcCCCCCCChhHHHHHHHhcccCCCCceEEEecCCc-ccccchh
Q 009735 375 RIISTISVEKLSHTLPDPTLIWFFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPH-MAKAKDE 453 (527)
Q Consensus 375 ~~~~~i~~e~ls~~~~d~t~v~~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LL~~~~~~~GWavlskGs~-~~~g~G~ 453 (527)
+++++|++|||||+|+|||+|||||+|||||++||+|+|+++++|++||||++||||||+++|||||||||+ +++|||+
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~v~~~ghG~ 160 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSNVMVKGHGE 160 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCceeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hHHHHHhhhcccCCCCCCCcHHHHHHHhhhhcC-CCCCccceecCCCCCCCCceeecCCCCcccceeeeeeccCC
Q 009735 454 TILKCLTEYTTWEPNVPEKSFVVAMNDYLNENR-TPYHCNRLILPGEAGRIPEKVVCAECGRRMEEFIMYRCCTD 527 (527)
Q Consensus 454 ~~~~~l~~f~~Wk~~v~~kgF~~Af~~y~~~~~-~~~~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~YkCCh~ 527 (527)
+|++||++|+.||++|+++||++||+|||++++ +||||||+++|+++|+||++|+|||||||||+||+||||||
T Consensus 161 ~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~~~~p~~~g~ipe~i~CpeC~R~MEk~v~YkCChd 235 (235)
T PF14577_consen 161 TMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNRLEFPNSAGRIPETIVCPECGRPMEKFVMYKCCHD 235 (235)
T ss_pred cHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCeeEeccCcccCCCceeECCCCCCchhhceeeeccCC
Confidence 999999999999999999999999999999988 59999999999999999999999999999999999999997
No 2
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=6.8e-46 Score=373.42 Aligned_cols=127 Identities=67% Similarity=1.101 Sum_probs=125.0
Q ss_pred CCccchhhHHHHHHHHHHhhHHHhhcCCCcCCCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhhcccccccccccccc
Q 009735 1 MKPRFETLSNLITAMLDLTKCIVEVKELPSDYITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTT 80 (527)
Q Consensus 1 lk~~~~~~~~Lvk~m~~v~~cI~e~~~l~~~y~~~dvp~l~~a~~~IP~~vYW~I~sivac~~qi~~l~~~~~~~~~s~~ 80 (527)
+||||+++|+|||+||||++||+||++||++||++|||+|++|++|||+||||||||+|||++||++||++||| +.+++
T Consensus 160 lk~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt~~~~e-~~~~~ 238 (286)
T PF14576_consen 160 LKPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLTGMGHE-ITSTT 238 (286)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcccc-cccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccc
Q 009735 81 ETWELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHI 131 (527)
Q Consensus 81 ~~~eLs~l~~Kl~~i~~~L~~~l~~c~~~I~~~~~~e~y~~l~~lf~~~~~ 131 (527)
++||||+|+|||++|++|||+||++|++|||+ +|+|++|+++|++||+
T Consensus 239 ~~~eLS~l~~KL~~I~~~Lk~qL~~C~~~I~~---~E~y~~l~~lf~t~~~ 286 (286)
T PF14576_consen 239 EAWELSSLAHKLSNILSHLKKQLDLCRQQIEE---IEDYQMLLKLFETPHI 286 (286)
T ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999 8999999999999975
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.93 E-value=1.5e-25 Score=209.23 Aligned_cols=133 Identities=24% Similarity=0.350 Sum_probs=118.1
Q ss_pred ccccCCCCceeecc-cccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHH
Q 009735 150 PLVECPTKRKVSID-VLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHK 226 (527)
Q Consensus 150 pl~dg~~~~kV~Is-~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~ 226 (527)
...-+..+..|.++ .|+||.|+|||||+||+||+ ||+|.++|++++ +.+..|||||||. |+++++
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~----~~~~~fEVvfVS~--------D~~~~~ 82 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELK----DNAAPFEVVFVSS--------DRDEES 82 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHH----hcCCceEEEEEec--------CCCHHH
Confidence 34556777889988 69999999999999999987 889999999998 3455999999985 999999
Q ss_pred HHHhhc--CCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccCChhhHHHhhhh
Q 009735 227 FEALQY--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE 304 (527)
Q Consensus 227 F~~~~~--~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~~ 304 (527)
|++|+. .|||++|||.+ +.++.+.++|.+++||.|++++|+|.+++.||+.+|..+|+ .+-.+++++
T Consensus 83 ~~~y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e 151 (157)
T KOG2501|consen 83 LDEYMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE 151 (157)
T ss_pred HHHHHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence 999998 49999999987 78899999999999999999999999999999999999998 556666666
Q ss_pred c
Q 009735 305 E 305 (527)
Q Consensus 305 e 305 (527)
|
T Consensus 152 w 152 (157)
T KOG2501|consen 152 W 152 (157)
T ss_pred H
Confidence 3
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.86 E-value=3.9e-21 Score=170.42 Aligned_cols=125 Identities=24% Similarity=0.405 Sum_probs=112.2
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
..+|+.|++++++||.|+|+|.+.||++|. .+.|.++|++++ ..+.+++|++|++ |.+++.|..+.
T Consensus 5 ~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vv~is~--------d~~~~~~~~~~ 72 (131)
T cd03009 5 RNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLK----ESGKNFEIVFISW--------DRDEESFNDYF 72 (131)
T ss_pred ccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHH----hcCCCEEEEEEEC--------CCCHHHHHHHH
Confidence 357789999999999999999999999998 678999999996 2345799999997 66778999999
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccC
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPF 293 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPF 293 (527)
+.+||+.+||++ ....+.+.+.|++.++|+++++|++|+++..||.+|+..||..||||
T Consensus 73 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999999999964 34557888999999999999999999999999999999999999998
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.82 E-value=4.3e-20 Score=171.24 Aligned_cols=136 Identities=19% Similarity=0.341 Sum_probs=113.5
Q ss_pred hhcccCCCCCccccCCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhc-cCCCCCeEEEEEeccCCC
Q 009735 140 LLIHTKDDQLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLS-SRTESQYEVVWLPIVDRS 216 (527)
Q Consensus 140 ~LI~~k~~~~pl~dg~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~-~~~~~~fEIVwIpiVd~s 216 (527)
.||..+++ -|+.+-.+++++.|+||.|+|+|.|.||+||. +|.|.++|++++++. .+.+.+||||.|+.
T Consensus 2 ~~~~~~~~----~~~~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~---- 73 (146)
T cd03008 2 VLIKNNSD----RDELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSM---- 73 (146)
T ss_pred eeeccCcc----ccchhcccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEEC----
Confidence 46666666 24445557788999999999999999999987 778999999997421 11345799999996
Q ss_pred CCcchhhHHHHHHhhcCCC--ceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccc
Q 009735 217 TPWTEAKEHKFEALQYMMP--WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAF 291 (527)
Q Consensus 217 ~~w~D~~~~~F~~~~~~MP--WyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~Af 291 (527)
|++++++..+.+.|+ |+++|+.+ .....+.+.|++.++|++++|||+|+|+..|++..|..+|.+||
T Consensus 74 ----D~~~~~~~~f~~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 74 ----DQSEQQQESFLKDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ----CCCHHHHHHHHHHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 667788999999998 99999976 23357788999999999999999999999999999999999997
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.79 E-value=1.3e-18 Score=155.46 Aligned_cols=126 Identities=25% Similarity=0.396 Sum_probs=110.9
Q ss_pred cccCCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHH
Q 009735 151 LVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFE 228 (527)
Q Consensus 151 l~dg~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~ 228 (527)
|.||+ +.|+++.++||.|+|+|.+.||++|. .+.|.++|+++++ ...+++|++|++ |++.+.++
T Consensus 3 ~~~~~--~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~----~~~~v~vi~Vs~--------d~~~~~~~ 68 (132)
T cd02964 3 LLDGE--GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE----EGKNFEIVFVSR--------DRSEESFN 68 (132)
T ss_pred cccCC--ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh----cCCCeEEEEEec--------CCCHHHHH
Confidence 45777 79999999999999999999999988 5679999999962 235799999996 66677888
Q ss_pred HhhcCC-CceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHH-hCCccccC
Q 009735 229 ALQYMM-PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWI-WGSVAFPF 293 (527)
Q Consensus 229 ~~~~~M-PWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AfPF 293 (527)
.+.+++ +|+.+++.+ ......+.+.|++.++|+.+++|++|++++.|+..++.. ||..||||
T Consensus 69 ~~~~~~~~~~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 69 EYFSEMPPWLAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred HHHhcCCCeEeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 888888 899999954 345678889999999999999999999999999999999 99999998
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.58 E-value=1.7e-14 Score=120.76 Aligned_cols=91 Identities=23% Similarity=0.438 Sum_probs=79.7
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCC--CceeecCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM--PWFSVHHP 242 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~M--PWyAVpf~ 242 (527)
||.++|+|.+.||++|. ++.|.++|++.+ + +.+++||+||+ |++++.++++.+.+ ||+.+++.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~----~-~~~v~~v~Vs~--------d~~~~~~~~~~~~~~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK----K-KDDVEFVFVSL--------DEDEEEWKKFLKKNNFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----T-TTTEEEEEEE---------SSSHHHHHHHHHTCTTSSEEEETT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----C-CCCEEEEEEEe--------CCCHHHHHHHHHhcCCCceEEeeC
Confidence 89999999999999987 678999999996 3 78999999997 78888999999888 99999997
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
+ .....+.+.|++.++|++++|||+|+|
T Consensus 68 ~----~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 D----DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp T----HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred c----chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 6 446789999999999999999999986
No 8
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.81 E-value=2.9e-08 Score=85.40 Aligned_cols=102 Identities=14% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCceeeccccc-CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLR-RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~-gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
.+|+.+.++.++ ||.|+|+|-+.||++|. ++.|.++|++.+ .++.|+-|+ |.+.+..+.+.
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-------~~~~vi~v~---------~~~~~~~~~~~ 71 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-------DWLDVVLAS---------DGEKAEHQRFL 71 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc-------CCcEEEEEe---------CCCHHHHHHHH
Confidence 456789999998 99999999999999988 566888777652 247777553 22334444444
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceeccc
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 278 (527)
+.++.-..|+ ..+. .+.+.|++.++|..+++|++|+++..+
T Consensus 72 ~~~~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 KKHGLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHhCCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 4443322222 1122 256789999999999999999998654
No 9
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.80 E-value=5.9e-08 Score=86.00 Aligned_cols=105 Identities=18% Similarity=0.160 Sum_probs=74.2
Q ss_pred CceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhc--
Q 009735 157 KRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY-- 232 (527)
Q Consensus 157 ~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~-- 232 (527)
++.|+++.++||.|+|+|-+.||++|. ++.|.++|++.+ ..+++||.|+.-+.+ .+.+.+....+..
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~------~~~~~vi~i~~~~~~---~~~~~~~~~~~~~~~ 83 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYK------DDGLVVIGVHSPEFA---FERDLANVKSAVLRY 83 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcC------cCCeEEEEeccCccc---cccCHHHHHHHHHHc
Confidence 567999999999999999999998877 667999999985 246899988741111 1223334433332
Q ss_pred CCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 233 MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 233 ~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.++|..+- |.. ..+.+.|++.+.|..+|+|++|+++..
T Consensus 84 ~~~~p~~~-----D~~--~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 84 GITYPVAN-----DND--YATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCCEEE-----CCc--hHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 34443222 222 345567899999999999999999854
No 10
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.77 E-value=3.5e-08 Score=87.85 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=78.2
Q ss_pred CCCceeecccccCcEEEEEEecCCCCh-hH--HHHHHHHHHHHhhhccCCC-CCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSN-EE--LFLLEQMYRESRQLSSRTE-SQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~-~~--~~~L~~iY~~lk~~~~~~~-~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
.+|+.++++.++||.++|+|.+.||++ |. ++.|.++|+++++ .+ +++++|+|++ |...+ +.+..++|-+-
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~----~~~~~v~~v~vs~-d~~~d-~~~~~~~~~~~ 83 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA----DGGDDVQVVFISV-DPERD-TPEVLKAYAKA 83 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH----hhcCceEEEEEEE-CCCCC-CHHHHHHHHHH
Confidence 466789999999999999999999987 75 6679999999963 22 5799999997 31100 01223334333
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCCC--------------CcEEEEeCCCCceec
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK--------------KPILVVLDPQGRVVN 276 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~--------------iP~LVvL~pqGkv~~ 276 (527)
.. .+|..+..++ +..+.+.+.|++.. .|..+|+||+|+++.
T Consensus 84 ~~-~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 138 (142)
T cd02968 84 FG-PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR 138 (142)
T ss_pred hC-CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence 22 5788887753 34456666777543 457999999999975
No 11
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.74 E-value=6.8e-08 Score=80.14 Aligned_cols=103 Identities=20% Similarity=0.205 Sum_probs=73.6
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhc
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY 232 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~ 232 (527)
.+|..++.+.++||.++|+|.+.||+.|. ++.|.++++++. +.++.++.|++ |. .+ .+.-.++.+
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~~v~~-d~---~~---~~~~~~~~~ 73 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYK------DDGVEVVGVNV-DD---DD---PAAVKAFLK 73 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhC------CCCeEEEEEEC-CC---CC---HHHHHHHHH
Confidence 45678999999999999999999999987 445777777762 45688888875 21 12 333333333
Q ss_pred CC--CceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 233 MM--PWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 233 ~M--PWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.. ||..+. +. .+.+.+.|++.+.|.++++||+|+++..
T Consensus 74 ~~~~~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 74 KYGITFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HcCCCcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 33 333222 22 2567889999999999999999999854
No 12
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.63 E-value=3.1e-07 Score=82.60 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=78.8
Q ss_pred CCCceeecccccCcEEEEEEecC-CCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDL-DVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal-~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
.+|+.++++.++||.|+|.|-+. |||+|. ++.|.++|++.+ ..++++|.|...+ |....+|-.-
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~------~~~v~~v~v~~~~------~~~~~~~~~~- 82 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYK------DKGVDVVGVSSDD------DPPVREFLKK- 82 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH------TTTCEEEEEEESS------SHHHHHHHHH-
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc------cCceEEEEecccC------CHHHHHHHHh-
Confidence 88999999999999999999888 999988 567999988875 2359999998733 3335555443
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCCC---------CCcEEEEeCCCCceeccc
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDFR---------KKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~~---------~iP~LVvL~pqGkv~~~n 278 (527)
...+|..+--++ ..+.+.|++. +.|..+++|++|+|+...
T Consensus 83 ~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 83 YGINFPVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TTTTSEEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred hCCCceEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 445555533322 3456667887 999999999999998654
No 13
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.60 E-value=2.1e-07 Score=85.68 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=77.8
Q ss_pred cCCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 153 ECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 153 dg~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
...+|+.+++++++||.++|+|-+.||++|. ++.|.+++++.+ +.++++|-|+. |.+.+...++
T Consensus 47 ~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~------~~~~~vi~i~~--------d~~~~~~~~~ 112 (173)
T PRK03147 47 TDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK------EKGVEIIAVNV--------DETELAVKNF 112 (173)
T ss_pred ecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhh------cCCeEEEEEEc--------CCCHHHHHHH
Confidence 3567788999999999999999999999988 457999999885 23588999875 4444455544
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.+.++ ++|+-..|. .+.+.+.|++.+.|..+++|++|+++..
T Consensus 113 ~~~~~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 113 VNRYG---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHhC---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 44433 233322222 2455667899999999999999999854
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.48 E-value=1.2e-06 Score=75.91 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCCCceeecccccCcEEEEEEecC-CCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDL-DVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal-~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
..+|+.+++++|+||.++|+|-+. ||+.|. +..|.+.|++++ ..+..+|.|+. | +.++.++|.+.
T Consensus 12 ~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~------~~~~~vi~is~-d-----~~~~~~~~~~~ 79 (124)
T PF00578_consen 12 DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYK------DKGVQVIGIST-D-----DPEEIKQFLEE 79 (124)
T ss_dssp TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH------TTTEEEEEEES-S-----SHHHHHHHHHH
T ss_pred CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhc------cceEEeeeccc-c-----cccchhhhhhh
Confidence 456789999999999999888887 999987 556999999996 23699999986 3 12234555544
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCC------CCcEEEEeCCCCceec
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVN 276 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~ 276 (527)
+. +||-.+.-++ ..+.+.|+.. ..|..+|+||+|+++.
T Consensus 80 ~~-~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 80 YG-LPFPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HT-CSSEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hc-cccccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 43 3333333222 3455667887 9999999999999874
No 15
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.44 E-value=9.9e-07 Score=97.16 Aligned_cols=108 Identities=12% Similarity=0.068 Sum_probs=81.3
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcc-hhhHHHHHHh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT-EAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~-D~~~~~F~~~ 230 (527)
..+|..+.++ +||.|+|.|-|.||++|. ++.|.++|++.+ ..+++||-|.+ + .++ +++.+.|.++
T Consensus 45 D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k------~~~v~VI~Vs~-~---~~~~e~~~~~~~~~ 112 (521)
T PRK14018 45 DNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAK------FSSANLITVAS-P---GFLHEKKDGDFQKW 112 (521)
T ss_pred cCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc------cCCeEEEEEec-c---cccccccHHHHHHH
Confidence 4455567666 999999999999999988 678999999874 34588888864 2 122 4556788888
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.+.+.|..+|.-- |.. ..+.+.|+++++|++++||++|+++..
T Consensus 113 ~~~~~y~~~pV~~--D~~--~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 113 YAGLDYPKLPVLT--DNG--GTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred HHhCCCcccceec--ccc--HHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 8877765544421 332 356678899999999999999999854
No 16
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.43 E-value=1.2e-06 Score=77.28 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=68.3
Q ss_pred ceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh--cC
Q 009735 158 RKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ--YM 233 (527)
Q Consensus 158 ~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~--~~ 233 (527)
..++.+.++||.|+|+|-+.||++|. .+.|.+++++. +++||-|+. |...+...++. ..
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---------~~~vv~v~~--------~~~~~~~~~~~~~~~ 78 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---------RVPIYGINY--------KDNPENALAWLARHG 78 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---------CcEEEEEEC--------CCCHHHHHHHHHhcC
Confidence 56888999999999999999999988 44566554331 388888875 22333333332 33
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.||..+-... . ..+...|++.++|..++||++|+++..
T Consensus 79 ~~~~~~~~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 79 NPYAAVGFDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred CCCceEEECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 4776554422 2 346677899999999999999998854
No 17
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.36 E-value=2.9e-06 Score=79.49 Aligned_cols=105 Identities=12% Similarity=0.132 Sum_probs=75.0
Q ss_pred CCCceeecccccCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfS-al~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
.++..+++++++||.|+|+|- +.||++|. ++.|.+.|+++++ .++.||.|+. | .....++|....
T Consensus 17 ~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~------~~v~vv~Is~-d-----~~~~~~~~~~~~ 84 (173)
T cd03015 17 GEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK------LNAEVLGVST-D-----SHFSHLAWRNTP 84 (173)
T ss_pred CCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEec-C-----CHHHHHHHHHhh
Confidence 344789999999999998886 88987766 6779999999962 4699999985 3 122334565543
Q ss_pred ------cCCCceeecCCCCCCHHHHHHHHHhhCCC------CCcEEEEeCCCCceeccc
Q 009735 232 ------YMMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 232 ------~~MPWyAVpf~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 278 (527)
..+||-.+.-++ ..+.+.|++. .+|..+|||++|+++..+
T Consensus 85 ~~~~~~~~~~f~~l~D~~-------~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 85 RKEGGLGKINFPLLADPK-------KKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred hhhCCccCcceeEEECCc-------hhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 356776555432 2333455665 578999999999998776
No 18
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.34 E-value=4.1e-06 Score=80.22 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=72.3
Q ss_pred CCccccC--CCCceeec--ccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcch
Q 009735 148 QLPLVEC--PTKRKVSI--DVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE 221 (527)
Q Consensus 148 ~~pl~dg--~~~~kV~I--s~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D 221 (527)
..|-|.. .+|+.+.+ +.++||.|+|+|.+.|||+|. .+.+.++|++. ++.+++|+. | ++
T Consensus 51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---------~~~vv~Is~-~-----~~ 115 (189)
T TIGR02661 51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---------ETDVVMISD-G-----TP 115 (189)
T ss_pred cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---------CCcEEEEeC-C-----CH
Confidence 3455543 35778998 457999999999999999988 56788877542 367899972 2 23
Q ss_pred hhHHHHHH-hhcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 222 AKEHKFEA-LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 222 ~~~~~F~~-~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
++.++|-. +.-+.|.|. . + ..+.+.|++.++|..+++|++|++...
T Consensus 116 ~~~~~~~~~~~~~~~~~~--~-~-------~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 116 AEHRRFLKDHELGGERYV--V-S-------AEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHHHHHhcCCCcceee--c-h-------hHHHHhccCCccceEEEECCCCeEEEc
Confidence 44445543 322334443 1 1 234567899999999999999999863
No 19
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.32 E-value=2.9e-06 Score=78.99 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=76.6
Q ss_pred CCCCceeecccc-cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 154 CPTKRKVSIDVL-RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L-~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
..+|..|+++.+ +||.|+|+|=+.|||.|. ++.|.+++++.+ +.++++|-|++-+....+. ++.+....+
T Consensus 11 ~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~------~~~v~~v~is~d~~~~~~~-d~~~~~~~~ 83 (171)
T cd02969 11 DTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYG------AKGVAVVAINSNDIEAYPE-DSPENMKAK 83 (171)
T ss_pred CCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHh------hCCeEEEEEecCccccccc-cCHHHHHHH
Confidence 345668999998 999999999999999876 567999998884 2469999998621111111 234444444
Q ss_pred hc--CCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceeccc
Q 009735 231 QY--MMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 231 ~~--~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 278 (527)
.+ ..||-.+ .|.. +.+.+.|++.+.|..+++||+|+++...
T Consensus 84 ~~~~~~~~~~l-----~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 84 AKEHGYPFPYL-----LDET--QEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHCCCCceEE-----ECCc--hHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 43 3443222 2333 3566788999999999999999998543
No 20
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.29 E-value=1.5e-05 Score=75.89 Aligned_cols=117 Identities=16% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCCCceeecccccCcEEE-EEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccC--CCCCcchhhHHHHH
Q 009735 154 CPTKRKVSIDVLRRKSVL-LLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVD--RSTPWTEAKEHKFE 228 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~Vl-LyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd--~s~~w~D~~~~~F~ 228 (527)
..+|+.|++++++||.|+ +++-|.||++|. ++.|.++|++.+ +.+++||-||.-+ ...+++.++-.+|-
T Consensus 27 d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~------~~gv~vv~vs~~~~~~~~~~~~~~~~~f~ 100 (183)
T PTZ00256 27 DIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYK------SQGLEILAFPCNQFMEQEPWDEPEIKEYV 100 (183)
T ss_pred cCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHh------hCCcEEEEEecccccccCCCCHHHHHHHH
Confidence 467789999999999654 455799999887 778999999985 2359999998511 11123334444453
Q ss_pred H--hhcCCCcee-e-cCCCCCCHHHHHHHHHhh--------CCCCCcE---EEEeCCCCceecc
Q 009735 229 A--LQYMMPWFS-V-HHPSAIDPAVIRYAKEKW--------DFRKKPI---LVVLDPQGRVVNQ 277 (527)
Q Consensus 229 ~--~~~~MPWyA-V-pf~~~i~~~~~r~ike~~--------~~~~iP~---LVvL~pqGkv~~~ 277 (527)
. +.-+.|=++ + +-.. ...+..+++++.. .+.++|. .+++|++|+++..
T Consensus 101 ~~~~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 101 QKKFNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred HHhcCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 2 222223221 0 1111 1124556677654 4678995 6999999999864
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.27 E-value=3.8e-06 Score=74.63 Aligned_cols=103 Identities=20% Similarity=0.280 Sum_probs=73.3
Q ss_pred CCCceeecccccCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfS-al~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
.+|+.+++++++||.++|+|- +.|||.|. ++.|.+.|++++ +.+++||.|+. | +.+.-.+|-..+
T Consensus 11 ~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~------~~~~~vv~is~-d-----~~~~~~~~~~~~ 78 (140)
T cd03017 11 QDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFK------ALGAVVIGVSP-D-----SVESHAKFAEKY 78 (140)
T ss_pred CCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH------HCCCEEEEEcC-C-----CHHHHHHHHHHh
Confidence 347789999999999998886 57776665 667999999985 24589999985 3 233344454332
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCCCCC---------cEEEEeCCCCceecc
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRKK---------PILVVLDPQGRVVNQ 277 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~~~i---------P~LVvL~pqGkv~~~ 277 (527)
.++|..+- |.. +.+.+.|++... |..+++|++|+++..
T Consensus 79 -~~~~~~l~-----D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 -GLPFPLLS-----DPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred -CCCceEEE-----CCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 35554432 222 346677898887 999999999999854
No 22
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.26 E-value=1.1e-05 Score=71.47 Aligned_cols=106 Identities=14% Similarity=0.173 Sum_probs=75.1
Q ss_pred CCCCceeecccccCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfS-al~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
+.+|+.++++.++||.++|+|- +.||+.|. ++.|.++|++++ ..+++||.|+. | +.+...+|.+-
T Consensus 9 ~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~------~~~~~~i~is~-d-----~~~~~~~~~~~ 76 (140)
T cd02971 9 ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA------KGGAEVLGVSV-D-----SPFSHKAWAEK 76 (140)
T ss_pred cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH------HCCCEEEEEeC-C-----CHHHHHHHHhc
Confidence 3467899999999998888776 78987766 667999999995 23599999985 2 12334455544
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCCCCc---------EEEEeCCCCceeccc
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQN 278 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~n 278 (527)
....+|-.+- |.. ..+.+.|++...| ..+|+|++|+++...
T Consensus 77 ~~~~~~~~l~-----D~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 77 EGGLNFPLLS-----DPD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred ccCCCceEEE-----CCC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 4355665443 222 3566778887665 799999999998653
No 23
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.24 E-value=1.5e-05 Score=73.25 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=72.9
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEec--cCCCCCcchhhHHHHHHh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI--VDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpi--Vd~s~~w~D~~~~~F~~~ 230 (527)
.+|+.+++++++||.|+|+|-+.|||+|. .+.|.++|++.+ ..+++||-||. +..+.+=+.++..+|-+-
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~------~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~ 83 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELG------PSHFNVLAFPCNQFGESEPDSSKEIESFARR 83 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHh------hCCeEEEEEeccccccCCCCCHHHHHHHHHH
Confidence 46678999999999999999999999976 678999999995 23599999985 211110012334455432
Q ss_pred hcCCCceeec-----CCCCCCHHHHHHHHHhhCCCCCcE----EEEeCCCCceecc
Q 009735 231 QYMMPWFSVH-----HPSAIDPAVIRYAKEKWDFRKKPI----LVVLDPQGRVVNQ 277 (527)
Q Consensus 231 ~~~MPWyAVp-----f~~~i~~~~~r~ike~~~~~~iP~----LVvL~pqGkv~~~ 277 (527)
...+++..+. -++ . ....+++.+ +..+.|. ..++|++|+++..
T Consensus 84 ~~~~~fp~~~d~~~~~~~-~-~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 84 NYGVTFPMFSKIKILGSE-A-EPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred hcCCCCCccceEecCCCC-C-CcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence 1233332221 111 0 123355533 3456897 9999999999864
No 24
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.23 E-value=5.5e-06 Score=78.91 Aligned_cols=100 Identities=17% Similarity=0.083 Sum_probs=66.7
Q ss_pred Cceeecccc-cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcC
Q 009735 157 KRKVSIDVL-RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 233 (527)
Q Consensus 157 ~~kV~Is~L-~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~ 233 (527)
|..+..+.+ +||.|+|+|-+.||++|. .+.|.++++ .+++||-|+. |. +.++..+|-.- ..
T Consensus 57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----------~~~~vi~v~~-~~----~~~~~~~~~~~-~~ 120 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----------QGIRVVGMNY-KD----DRQKAISWLKE-LG 120 (185)
T ss_pred CccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----------cCCEEEEEEC-CC----CHHHHHHHHHH-cC
Confidence 345666666 799999999999999987 556765532 2589999874 20 11223334322 24
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceeccc
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 278 (527)
+||..+.+.. . ..+...|++.++|..+++|++|+++...
T Consensus 121 ~~~~~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 121 NPYALSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCceEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 5766544422 2 2345678999999999999999988543
No 25
>PLN02412 probable glutathione peroxidase
Probab=98.22 E-value=1.3e-05 Score=75.32 Aligned_cols=118 Identities=15% Similarity=0.258 Sum_probs=80.5
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCC-C-Ccc-hhhHHHH-
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-T-PWT-EAKEHKF- 227 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s-~-~w~-D~~~~~F- 227 (527)
..+|+++.++.++||.|+|+|-+.||++|. .+.|.++|++.+ +.+++||=||.-+.. . +-+ ++-.+.|
T Consensus 16 d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~------~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~ 89 (167)
T PLN02412 16 DIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYK------EQGFEILAFPCNQFLGQEPGSNEEIQQTVC 89 (167)
T ss_pred CCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHh------hCCcEEEEecccccccCCCCCHHHHHHHHH
Confidence 357789999999999999999999999986 678999999996 235999999861100 0 011 2224455
Q ss_pred HHhhcCCCceee--cCCCCCCHHHHHHHHHh----hC--CCCCcEEEEeCCCCceeccc
Q 009735 228 EALQYMMPWFSV--HHPSAIDPAVIRYAKEK----WD--FRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 228 ~~~~~~MPWyAV--pf~~~i~~~~~r~ike~----~~--~~~iP~LVvL~pqGkv~~~n 278 (527)
+.+.-+.|+++- +-... .....++++.. +. +...|+-.++|++|+++..-
T Consensus 90 ~~~~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 90 TRFKAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred HccCCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 555667788752 22111 12344555542 12 56679999999999999764
No 26
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.21 E-value=4.6e-06 Score=72.64 Aligned_cols=96 Identities=18% Similarity=0.317 Sum_probs=66.7
Q ss_pred CCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcC
Q 009735 156 TKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 233 (527)
Q Consensus 156 ~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~ 233 (527)
+|+.++.+.++||.++|+|-+.||++|. .+.|..+|++ ++++-|+. |.. +.+...+|-.-+ .
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----------~~~i~i~~-~~~---~~~~~~~~~~~~-~ 72 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----------YPVVSVAL-RSG---DDGAVARFMQKK-G 72 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----------CCEEEEEc-cCC---CHHHHHHHHHHc-C
Confidence 4568999999999999999999999988 4568877754 56777775 210 123333444332 2
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+||-.+.-+ . ..+.+.|++.+.|+++++|++| +.
T Consensus 73 ~~~~~~~d~-----~--~~~~~~~~i~~~P~~~vid~~g-i~ 106 (123)
T cd03011 73 YGFPVINDP-----D--GVISARWGVSVTPAIVIVDPGG-IV 106 (123)
T ss_pred CCccEEECC-----C--cHHHHhCCCCcccEEEEEcCCC-eE
Confidence 555444322 1 3466788999999999999999 44
No 27
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.18 E-value=1.3e-05 Score=95.13 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=78.8
Q ss_pred CCccccCC----CCceeec-ccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcc
Q 009735 148 QLPLVECP----TKRKVSI-DVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT 220 (527)
Q Consensus 148 ~~pl~dg~----~~~kV~I-s~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~ 220 (527)
..|-|... ++..+.+ ++++||.|+|.|.|.||++|. .|.|.++|++.+ +..|+||-|+..+-. .
T Consensus 396 ~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~------~~~~~vvgV~~~~~D---~ 466 (1057)
T PLN02919 396 KVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYK------DQPFTVVGVHSAKFD---N 466 (1057)
T ss_pred cCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcC------CCCeEEEEEeccccc---c
Confidence 34555543 3556776 579999999999999999998 678999999874 345999999753210 1
Q ss_pred hhhHHHHHH--hhcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 221 EAKEHKFEA--LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 221 D~~~~~F~~--~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
+++.+.... ....++|..+.-. . ..+-+.|+++++|+++++|++|+++..
T Consensus 467 ~~~~~~~~~~~~~~~i~~pvv~D~-----~--~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 467 EKDLEAIRNAVLRYNISHPVVNDG-----D--MYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cccHHHHHHHHHHhCCCccEEECC-----c--hHHHHhcCCCccceEEEECCCCeEEEE
Confidence 222222222 2456677655332 1 234567899999999999999999743
No 28
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.15 E-value=1e-06 Score=83.29 Aligned_cols=47 Identities=21% Similarity=0.466 Sum_probs=40.5
Q ss_pred cCceEEEEEccCChhHH---HHHHHHHHHHHHHh---CCceeEEEeccCCchhhh
Q 009735 325 MEQKHICLYGGEDLEWV---RKFTALMGAVARAA---GIALEMLYVGKSNPKEKA 373 (527)
Q Consensus 325 ~egK~I~LYgg~d~~Wi---~~FT~~~~~i~~~~---~~~~E~v~Vgkd~~~e~v 373 (527)
.+||.|+||||+ +|| |+||+.+.+++++. +.+||+||||+|+..+..
T Consensus 31 l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~ 83 (157)
T KOG2501|consen 31 LQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL 83 (157)
T ss_pred hCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence 499999999999 777 99999999998853 557999999999876653
No 29
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.13 E-value=1.4e-05 Score=71.84 Aligned_cols=106 Identities=13% Similarity=0.081 Sum_probs=71.1
Q ss_pred CCCCceeecccccC-cEEEEEE-ecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH
Q 009735 154 CPTKRKVSIDVLRR-KSVLLLV-SDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA 229 (527)
Q Consensus 154 g~~~~kV~Is~L~g-K~VlLyf-Sal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~ 229 (527)
..+|+.++++.++| |.++|+| .+.||+.|. ++.|.++|++++ +.++.+|.|+. | +.+..++|-.
T Consensus 14 ~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~------~~~v~vi~vs~-d-----~~~~~~~~~~ 81 (149)
T cd03018 14 DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFE------AAGAEVLGISV-D-----SPFSLRAWAE 81 (149)
T ss_pred CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHH------hCCCEEEEecC-C-----CHHHHHHHHH
Confidence 34678999999999 8777655 599998887 567999999985 23588999984 2 1233445543
Q ss_pred hhcCCCceeecCCCCCCHHHHHHHHHhhCCC----CCc--EEEEeCCCCceecc
Q 009735 230 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----KKP--ILVVLDPQGRVVNQ 277 (527)
Q Consensus 230 ~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~----~iP--~LVvL~pqGkv~~~ 277 (527)
-+ ..+|..+- |....+.+.+.|++. ++| ..+++|++|+++-.
T Consensus 82 ~~-~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 82 EN-GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred hc-CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 32 35554432 221113445566776 433 89999999998865
No 30
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.13 E-value=4.4e-06 Score=76.76 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=43.2
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
.+|+.++++.++||.|+|+|=+.||+ |. ++.|+++|++.+ +.+++||-|++
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~------~~~~~vv~v~~ 62 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYK------DRGLVVLGFPC 62 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhc------CCCEEEEEecc
Confidence 46678999999999999999999988 76 677999999985 23588888875
No 31
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.13 E-value=1.2e-05 Score=75.65 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=63.9
Q ss_pred eeecccc-cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCC
Q 009735 159 KVSIDVL-RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMP 235 (527)
Q Consensus 159 kV~Is~L-~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MP 235 (527)
.+..+.+ +||.|+|+|.+.||++|. .+.|.++++ .+++||.|+. +. +.++..+|-+- ..+|
T Consensus 54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----------~~~~vi~V~~-~~----~~~~~~~~~~~-~~~~ 117 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----------DGLPIVGVDY-KD----QSQNALKFLKE-LGNP 117 (173)
T ss_pred ccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----------cCCEEEEEEC-CC----ChHHHHHHHHH-cCCC
Confidence 4555565 799999999999999988 344544432 2489999975 20 11222334322 2467
Q ss_pred ceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 236 WFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 236 WyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
|..+.+.. . ..+.+.|++.+.|..+++|++|+++..
T Consensus 118 f~~v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 118 YQAILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred CceEEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 76554422 2 345567899999999999999998854
No 32
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.12 E-value=2.4e-05 Score=71.39 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=70.5
Q ss_pred CCCCceeecccccCcEEEEEEecCC-CChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLD-VSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~-~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
+.+|..++++.++||.++|+|=+.| ||.|. +..|.+.|++++. .++++|-|++ | +.+.-.+|-.-
T Consensus 17 ~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~------~~v~vi~Is~-d-----~~~~~~~~~~~ 84 (154)
T PRK09437 17 DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK------AGVVVLGIST-D-----KPEKLSRFAEK 84 (154)
T ss_pred CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH------CCCEEEEEcC-C-----CHHHHHHHHHH
Confidence 3567789999999999998887765 54464 6679999999862 3588988875 2 34444455433
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCCCC------------cEEEEeCCCCceecc
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKK------------PILVVLDPQGRVVNQ 277 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~i------------P~LVvL~pqGkv~~~ 277 (527)
. ..||-.+.-+ . +.+.+.|++... |..++|||+|+++..
T Consensus 85 ~-~~~~~~l~D~-----~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 85 E-LLNFTLLSDE-----D--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred h-CCCCeEEECC-----C--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 3 4566554322 2 334455676543 678999999999865
No 33
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.08 E-value=3.5e-05 Score=77.26 Aligned_cols=118 Identities=14% Similarity=0.227 Sum_probs=75.3
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCC-CC-cchhhHHHHH-
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRS-TP-WTEAKEHKFE- 228 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s-~~-w~D~~~~~F~- 228 (527)
..+|+.|.++.++||.|+|.|-+.||++|. ++.|+++|++.+ +.+++||-|+.-+.. .+ =+.++..+|-
T Consensus 86 d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~------~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~ 159 (236)
T PLN02399 86 DIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYK------TQGFEILAFPCNQFGGQEPGSNPEIKQFAC 159 (236)
T ss_pred CCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHh------cCCcEEEEEecccccccCCCCHHHHHHHHH
Confidence 356789999999999999999999999986 778999999985 235999999962100 00 0123445553
Q ss_pred -HhhcCCCceeecCCC-CCCHHHHHHHHHhhC------CCCCcEEEEeCCCCceecc
Q 009735 229 -ALQYMMPWFSVHHPS-AIDPAVIRYAKEKWD------FRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 229 -~~~~~MPWyAVpf~~-~i~~~~~r~ike~~~------~~~iP~LVvL~pqGkv~~~ 277 (527)
.+....|-++=.-.. ..-.+..++++..+. ++..|.-+++|++|+++..
T Consensus 160 ~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 160 TRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred HhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 333334432100000 000123444544332 3567999999999999974
No 34
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.96 E-value=4.4e-05 Score=68.56 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=67.2
Q ss_pred CCCceeecccccCcEEEEEEecCC-CChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLD-VSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~-~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
.+|..+++++++||.|+|+|=+.| |++|. ++.|.+.|++.+ +++||=|+. | +.....+|.+
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--------~~~vi~Is~-d-----~~~~~~~~~~-- 77 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--------NTVVLTISA-D-----LPFAQKRWCG-- 77 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--------CCEEEEEEC-C-----CHHHHHHHHH--
Confidence 456789999999999999998888 55565 667998888851 588888874 2 1223344544
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCCCC------CcEEEEeCCCCceeccc
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVNQN 278 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~n 278 (527)
.+....+|.-+ |.. .+.+.+.|++.. .|...++|++|+++...
T Consensus 78 -~~~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 78 -AEGVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred -hcCCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 33321222211 211 133444556643 68999999999998654
No 35
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.96 E-value=4e-05 Score=74.11 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=74.8
Q ss_pred CCceeecccccCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhc
Q 009735 156 TKRKVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQY 232 (527)
Q Consensus 156 ~~~kV~Is~L~gK~VlLyfS-al~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~ 232 (527)
+-..+.+++++||.|+|+|= +.||+.|. +..|.+.|++++ +.+.+||=||. | +-...++|-+-..
T Consensus 20 ~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~------~~g~~vigIS~-D-----~~~~~~a~~~~~~ 87 (187)
T PRK10382 20 EFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQ------KLGVDVYSVST-D-----THFTHKAWHSSSE 87 (187)
T ss_pred cceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHH------hCCCEEEEEeC-C-----CHHHHHHHHHhhc
Confidence 45688889999999988877 88876665 667999999995 24599999985 3 1334556654332
Q ss_pred CCCceeecCCCCCCHHHHHHHHHhhCC----CCC--cEEEEeCCCCceecc
Q 009735 233 MMPWFSVHHPSAIDPAVIRYAKEKWDF----RKK--PILVVLDPQGRVVNQ 277 (527)
Q Consensus 233 ~MPWyAVpf~~~i~~~~~r~ike~~~~----~~i--P~LVvL~pqGkv~~~ 277 (527)
.+ ..++||=+.|. -+.+.+.|++ .+. |..+|+||+|++...
T Consensus 88 ~~--~~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 88 TI--AKIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred cc--cCCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 22 34455433343 2667777787 466 999999999998654
No 36
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.96 E-value=7.9e-05 Score=72.38 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=73.8
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCC-CCCc-chhhHHHHHHh
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDR-STPW-TEAKEHKFEAL 230 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~-s~~w-~D~~~~~F~~~ 230 (527)
.+|+.|+++.++||.|+|.|=|.||++|. .+.|.++|++.+ +.+++||-||+-+. ..+. +.++-.+|-.
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~------~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~- 99 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFN------PLGLEILAFPTSQFLNQEFPNTKDIRKFND- 99 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHh------cCceEEEEecchhccCCCCCCHHHHHHHHH-
Confidence 45789999999999999999999999885 778999999985 24599999986110 0001 1233445543
Q ss_pred hcCCCceeec-----CCCCCCHHHHHHHHH----hhCCCCC-------cEEEEeCCCCceecc
Q 009735 231 QYMMPWFSVH-----HPSAIDPAVIRYAKE----KWDFRKK-------PILVVLDPQGRVVNQ 277 (527)
Q Consensus 231 ~~~MPWyAVp-----f~~~i~~~~~r~ike----~~~~~~i-------P~LVvL~pqGkv~~~ 277 (527)
...++|..+- -+. ..++.+++++ .++..+. |+-+++|++|+++..
T Consensus 100 ~~~~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~ 160 (199)
T PTZ00056 100 KNKIKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAY 160 (199)
T ss_pred HcCCCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEE
Confidence 2345554321 111 1245555552 3333333 378999999999953
No 37
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.96 E-value=4.8e-05 Score=72.80 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=70.0
Q ss_pred eeecccccCcEEEEEEe-cCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh---c
Q 009735 159 KVSIDVLRRKSVLLLVS-DLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ---Y 232 (527)
Q Consensus 159 kV~Is~L~gK~VlLyfS-al~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~---~ 232 (527)
.++.++++||.|+|+|= +.||+.|. ++.|.+.|+++++ .+++||.||. |. ....+.|.... .
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~------~gv~vi~VS~-D~-----~~~~~~~~~~~~~~~ 90 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK------LGVEVYSVST-DT-----HFVHKAWHDTSEAIG 90 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh------cCCcEEEEeC-CC-----HHHHHHHHhhhhhcc
Confidence 57788999999999998 89987766 6679999999962 3689999985 31 22344554322 2
Q ss_pred CCCceeecCCCCCCHHHHHHHHHhhCCC------CCcEEEEeCCCCceeccc
Q 009735 233 MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 233 ~MPWyAVpf~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 278 (527)
.+|+..+ .|.. ..+.+.|++. ..|..+|+|++|++....
T Consensus 91 ~l~fpll-----sD~~--~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 91 KITYPML-----GDPT--GVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred CcceeEE-----ECCc--cHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 4443222 2322 4555667775 359999999999998654
No 38
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.89 E-value=0.00014 Score=64.85 Aligned_cols=102 Identities=18% Similarity=0.235 Sum_probs=66.0
Q ss_pred CCCceeeccccc-Cc-EEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 155 PTKRKVSIDVLR-RK-SVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 155 ~~~~kV~Is~L~-gK-~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
.+|+.++++.+. +| .|++||-+.||++|. ++.|.+.|++++ +.+++||-|+. | +.+....|.+-
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~------~~~v~vv~V~~-~-----~~~~~~~~~~~ 77 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELD------ALGVELVAVGP-E-----SPEKLEAFDKG 77 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHH------hcCeEEEEEeC-C-----CHHHHHHHHHh
Confidence 457789998875 34 555666799999987 667999999995 23589999874 2 11222233321
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCC-----------------------------CCcEEEEeCCCCceec
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR-----------------------------KKPILVVLDPQGRVVN 276 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~-----------------------------~iP~LVvL~pqGkv~~ 276 (527)
...||.. +.|.. +.+-+.|++. ..|..+|+|++|++.-
T Consensus 78 -~~~~~p~-----~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 78 -KFLPFPV-----YADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred -cCCCCeE-----EECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 1223322 22333 3345566663 7999999999999874
No 39
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.89 E-value=9.3e-05 Score=71.42 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCceeecccccCcEEEEEEecCC-CCh--hHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH-h
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLD-VSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-L 230 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~-~~~--~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~-~ 230 (527)
.++..+.+++++||.++|+|-+.+ |+. .++..|.+.|++++. .+++||.||. |. ......+.. .
T Consensus 24 ~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~------~g~~vv~IS~-d~-----~~~~~~~~~~~ 91 (199)
T PTZ00253 24 GSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE------LNCEVLACSM-DS-----EYAHLQWTLQE 91 (199)
T ss_pred CCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEeC-CC-----HHHHHHHHhCh
Confidence 355789999999999999888643 444 446679999999962 4699999996 31 222223221 1
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCC----C--CcEEEEeCCCCceec
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----K--KPILVVLDPQGRVVN 276 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~----~--iP~LVvL~pqGkv~~ 276 (527)
....=.-.++||-+.|.. +.+.+.|++. + .|..+||||+|++..
T Consensus 92 ~~~~~~~~~~fpll~D~~--~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 92 RKKGGLGTMAIPMLADKT--KSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred HhhCCccccccceEECcH--hHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 111001123444333432 5566667764 3 589999999999876
No 40
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.86 E-value=3.7e-05 Score=78.33 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=64.1
Q ss_pred CCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcC
Q 009735 156 TKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYM 233 (527)
Q Consensus 156 ~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~ 233 (527)
.++...++.|+||.++++|.+.||++|. .+.|.+++++- .++|+.|++ | .+.. ..
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---------g~~Vi~Vsv-D-------~~~~------~~ 211 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---------GIEVLPVSV-D-------GGPL------PG 211 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---------CcEEEEEeC-C-------CCcc------cc
Confidence 3445778999999999999999999998 56788887775 289999986 3 2211 11
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceeccc
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 278 (527)
+|-+ -. + +.+.+.|+++++|++++++++|+.+..-
T Consensus 212 fp~~---~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~v 246 (271)
T TIGR02740 212 FPNA---RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTPI 246 (271)
T ss_pred CCcc---cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEEE
Confidence 2221 11 1 2356789999999999999976555443
No 41
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.80 E-value=9.4e-05 Score=68.09 Aligned_cols=73 Identities=15% Similarity=0.133 Sum_probs=54.9
Q ss_pred ccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
-+||.|+|+|.+.||++|. .+.|.+++++.+ ..+.++.|-+ |.++ +
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~-------~~~~~v~v~v--------d~~~--~--------------- 65 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG-------DQVNFVMLNV--------DNPK--W--------------- 65 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc-------cCeeEEEEEc--------CCcc--c---------------
Confidence 4689999999999999998 557888887763 2477788754 2111 1
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
..+.+.|+++++|++++++++|+++..
T Consensus 66 --------~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 --------LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred --------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 123457899999999999999998854
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.78 E-value=0.00016 Score=70.32 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=71.5
Q ss_pred CccccCCC-CceeecccccCcEEEE-EEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhH
Q 009735 149 LPLVECPT-KRKVSIDVLRRKSVLL-LVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKE 224 (527)
Q Consensus 149 ~pl~dg~~-~~kV~Is~L~gK~VlL-yfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~ 224 (527)
.|-|...+ +..+++++++||.|+| +|-+.||+.|. +..|.+.|+++++ .+++||-||+ | +....
T Consensus 8 aP~F~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~------~~~~vi~vS~-D-----~~~~~ 75 (202)
T PRK13190 8 APDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK------LGVELVGLSV-D-----SIYSH 75 (202)
T ss_pred CCCcEEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHH
Confidence 44444332 2268999999998776 58899987776 5679999999962 3599999986 2 11222
Q ss_pred HHH----HHhhc-CCCceeecCCCCCCHHHHHHHHHhhCCC------CCcEEEEeCCCCceecc
Q 009735 225 HKF----EALQY-MMPWFSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 225 ~~F----~~~~~-~MPWyAVpf~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~ 277 (527)
..| .+-.. .+||..+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 76 ~~w~~~~~~~~g~~~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 76 IAWLRDIEERFGIKIPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred HHHHHhHHHhcCCCceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 233 22222 23433332 333 4556677874 48999999999998743
No 43
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.75 E-value=0.00013 Score=68.63 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCcccc--CCCCceeecccccCcEEEEEEecCC-CChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcc
Q 009735 146 DDQLPLVE--CPTKRKVSIDVLRRKSVLLLVSDLD-VSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT 220 (527)
Q Consensus 146 ~~~~pl~d--g~~~~kV~Is~L~gK~VlLyfSal~-~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~ 220 (527)
++..|-|. ..+|+.|++++++||.|+|+|=+.| |++|. ++.|.+.|++. .+++||=||. | +
T Consensus 21 G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~--------~~~~vv~vs~-D-----~ 86 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL--------DNTVVLCISA-D-----L 86 (167)
T ss_pred CCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc--------CCcEEEEEeC-C-----C
Confidence 44445543 2457789999999999999988888 66665 66788888776 1588998875 3 1
Q ss_pred hhhHHHHHHhhcCCCceeecCCCCCCHHHHHHHHHhhCCCCCc---------EEEEeCCCCceecccH
Q 009735 221 EAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKP---------ILVVLDPQGRVVNQNA 279 (527)
Q Consensus 221 D~~~~~F~~~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~nA 279 (527)
....++|.+-. .++- ++-+.|.. -+.+.+.|++.+.| ...|+|++|+++....
T Consensus 87 ~~~~~~f~~~~-~~~~----~~~lsD~~-~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 87 PFAQKRFCGAE-GLEN----VITLSDFR-DHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred HHHHHHHHHhC-CCCC----ceEeecCC-ccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEE
Confidence 23456666543 2331 11111212 13556677887777 9999999999986653
No 44
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.71 E-value=0.00012 Score=71.03 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=70.1
Q ss_pred CCccccCCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHH
Q 009735 148 QLPLVECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH 225 (527)
Q Consensus 148 ~~pl~dg~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~ 225 (527)
.+|-|.=.+|+.+.++.++ +++|-+.|||+|. .+.|+++|++.+ |+|+=|++ | .+.+
T Consensus 54 ~~~~f~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g---------~~Vi~Vs~-D-------~~~~ 112 (181)
T PRK13728 54 APRWFRLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG---------FSVFPYTL-D-------GQGD 112 (181)
T ss_pred CCCccCCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC---------CEEEEEEe-C-------CCCC
Confidence 4677777788999999998 6678899999987 678999998862 89999985 3 2210
Q ss_pred HHHHhhcCCCceeecCCCCCC-HHHHHHHHHhhCC--CCCcEEEEeCCCCceecc
Q 009735 226 KFEALQYMMPWFSVHHPSAID-PAVIRYAKEKWDF--RKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 226 ~F~~~~~~MPWyAVpf~~~i~-~~~~r~ike~~~~--~~iP~LVvL~pqGkv~~~ 277 (527)
+.||-.++ .. ..+.+.|+. .++|+.+++|++|+++-+
T Consensus 113 -------------~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~~ 152 (181)
T PRK13728 113 -------------TAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEALP 152 (181)
T ss_pred -------------CCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEEE
Confidence 35555442 22 345667884 699999999999998643
No 45
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.62 E-value=0.00041 Score=65.21 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=53.5
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.++.++|+|-|.||++|. .+.|.++|++. +++|+.|++ | +...+ +.| +.++.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~---------~~~Vi~Vs~-d------~~~~~-------~fp---~~~~~ 102 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF---------GLPVYAFSL-D------GQGLT-------GFP---DPLPA 102 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc---------CCcEEEEEe-C------CCccc-------ccc---cccCC
Confidence 345569999999999988 77899998774 288999986 2 11111 111 22221
Q ss_pred CCCHHHHHHHHHhh---CCCCCcEEEEeCCCCceec
Q 009735 244 AIDPAVIRYAKEKW---DFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 244 ~i~~~~~r~ike~~---~~~~iP~LVvL~pqGkv~~ 276 (527)
+. ..+...| ++.++|+++++|++|+++-
T Consensus 103 --~~---~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 103 --TP---EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred --ch---HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 11 2233445 7899999999999988653
No 46
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.59 E-value=0.0005 Score=65.37 Aligned_cols=109 Identities=16% Similarity=0.263 Sum_probs=76.4
Q ss_pred CCCceeecccccCcEEEEEEecCCCCh---hHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcch--hhHHHHHH
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSN---EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKFEA 229 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~---~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D--~~~~~F~~ 229 (527)
.+|+.|..+.|+||.++++|--..||. -.+..|.++.+++.+ .+.++++|+||+ |+ ..| +.-++|-.
T Consensus 40 ~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~----~~~~v~~v~ISv-DP---~~DTp~~L~~Y~~ 111 (174)
T PF02630_consen 40 QDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE----EGKDVQFVFISV-DP---ERDTPEVLKKYAK 111 (174)
T ss_dssp TTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH----TTTTEEEEEEES-ST---TTC-HHHHHHHHH
T ss_pred CCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh----ccCceEEEEEEe-CC---CCCCHHHHHHHHH
Confidence 577899999999999999998877754 335679999999973 367899999996 63 333 34556666
Q ss_pred hhcCCCceeecCCCCCCHHHHHHHHHhhCCC----------------CCcEEEEeCCCCceec
Q 009735 230 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR----------------KKPILVVLDPQGRVVN 276 (527)
Q Consensus 230 ~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~----------------~iP~LVvL~pqGkv~~ 276 (527)
.+. -.|..+.+. .+.++.+.+.|++. .-..+.++||+|++..
T Consensus 112 ~~~-~~~~~ltg~----~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 112 KFG-PDFIGLTGS----REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp CHT-TTCEEEEEE----HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred hcC-CCcceeEeC----HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 554 356666663 35556666665532 3357899999999874
No 47
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.59 E-value=0.00021 Score=61.34 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=54.1
Q ss_pred cCcEEEEEEecCCCChhHHH-H-HHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEELF-L-LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~-~-L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+||+++++|++.|||.|... . |.+. +++.. ....++.++.+.+ +.+.+ ..+.-+...=+ +++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~----~~~- 67 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPD-NDVAR---YLKDDFQVIFVNI------DDSRD-ESEAVLDFDGQ----KNV- 67 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHH-HHHHC---EEHCECEEEECES------HSHHH-HHHHHHSHTCH----SSC-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHH-HHHHH---HhhcCeEEEEEec------CCccc-ccccccccccc----hhh-
Confidence 58999999999999999943 2 3333 23321 1234688888887 22222 22221110000 111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
....+.+.+.|++.+-|+++++|++|+++.
T Consensus 68 ---~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 68 ---RLSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp ---HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred ---hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 134457889999999999999999999763
No 48
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.58 E-value=0.00022 Score=64.89 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=51.8
Q ss_pred cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 166 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~-----L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
++|.|+|+|++.||++|.... -.++-+.++ .+|-.|-| |. |+..+ ..
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~-------~~fv~Vkv---D~-----~~~~~-~~------------ 65 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN-------ENFVPIKV---DR-----EERPD-VD------------ 65 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh-------CCEEEEEE---eC-----CcCcH-HH------------
Confidence 589999999999999998321 234555443 35655544 31 11110 10
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceeccc
Q 009735 241 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 278 (527)
....++....|++.|.|++|+|||+|++++..
T Consensus 66 ------~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 66 ------KIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred ------HHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 11233455578999999999999999999776
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.47 E-value=0.00027 Score=62.45 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=54.3
Q ss_pred cC-cEEEEEEecCCCChhHHH--HH---HHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceee
Q 009735 166 RR-KSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 239 (527)
Q Consensus 166 ~g-K~VlLyfSal~~~~~~~~--~L---~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAV 239 (527)
+| |.|+++|++.||++|... .+ ..+.+.++ ++|.++-|.+ |++....+
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~--------d~~~~~~~----------- 65 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-------AHFVVVYINI--------DGDKEVTD----------- 65 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-------hheEEEEEEc--------cCCceeec-----------
Confidence 46 899999999999999843 33 25555553 3577777764 22211111
Q ss_pred cCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCC-Cceecc
Q 009735 240 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQ-GRVVNQ 277 (527)
Q Consensus 240 pf~~~i~~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~~ 277 (527)
|+.. ....+.+...|++++.|++++++++ |+++..
T Consensus 66 -~~~~--~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 66 -FDGE--ALSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred -cCCC--CccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 1110 0123567788999999999999999 887743
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.46 E-value=0.00063 Score=58.09 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=50.6
Q ss_pred cCcEEEEEEecCCCChhHHH--HH---HHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 166 RRKSVLLLVSDLDVSNEELF--LL---EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~--~L---~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
+||.|+|+|++.||++|... .+ .++.+.++ +++.++.|-. ++ ++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-------~~~~~~~vd~-------~~-~~---------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-------KDVVLLRADW-------TK-ND---------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-------CCeEEEEEec-------CC-CC----------------
Confidence 58999999999999999843 23 35666653 1566666642 11 10
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCcEEEEeCC-CCcee
Q 009735 241 HPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVV 275 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~~iP~LVvL~p-qGkv~ 275 (527)
.....+.+.|++.++|+++++++ +|+++
T Consensus 59 -------~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 59 -------PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred -------HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 11245667789999999999999 89875
No 51
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.43 E-value=0.00064 Score=65.98 Aligned_cols=104 Identities=11% Similarity=0.110 Sum_probs=70.4
Q ss_pred eeecccccC-cEEE-EEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH-hhcC
Q 009735 159 KVSIDVLRR-KSVL-LLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM 233 (527)
Q Consensus 159 kV~Is~L~g-K~Vl-LyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~-~~~~ 233 (527)
++.+++++| |.|+ ++|-+.|||.|. +..|.+.|++++. .+.+|+-||+ | +.....+|.+ ..+.
T Consensus 16 ~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~------~gv~vigvS~-D-----~~~~~~~~~~~i~~~ 83 (203)
T cd03016 16 PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK------RNVKLIGLSV-D-----SVESHIKWIEDIEEY 83 (203)
T ss_pred cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHHHhhHHHh
Confidence 588999999 6554 578888888876 5579999999962 3589999986 2 1223344432 3333
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCC----CC----cEEEEeCCCCceecc
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFR----KK----PILVVLDPQGRVVNQ 277 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~----~i----P~LVvL~pqGkv~~~ 277 (527)
+. +.++||-+.|.. +.+.+.|++. +. |..+|+||+|++...
T Consensus 84 ~~-~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 84 TG-VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred cC-CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 33 566666544443 5666777765 33 469999999998754
No 52
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.42 E-value=0.00058 Score=69.63 Aligned_cols=155 Identities=13% Similarity=0.074 Sum_probs=88.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhcccchhHHHHHhhhcccCCCCCccccCC-----CCceeecccc-cCcEEEEEEe-cC
Q 009735 105 LCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECP-----TKRKVSIDVL-RRKSVLLLVS-DL 177 (527)
Q Consensus 105 ~c~~~I~~~~~~e~y~~l~~lf~~~~~D~m~vl~k~LI~~k~~~~pl~dg~-----~~~kV~Is~L-~gK~VlLyfS-al 177 (527)
.|.+-.++.... ..++..+.|-|. -+.|.--+..+ .|+..|-|... ....++++++ +||.|+|||= +.
T Consensus 35 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~---vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ 109 (261)
T PTZ00137 35 NCFKSVDRISSL-KSVNGVRNYSTS-EGLCNTVTSSL---VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLD 109 (261)
T ss_pred hhccchhhHHHH-HHHHHHHhccCC-ccccccccccc---CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCC
Confidence 455555442111 223455556554 23333220222 34445555432 2246899997 8987777766 78
Q ss_pred CCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh-hcCCCceeecCCCCCCHHHHHHHH
Q 009735 178 DVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL-QYMMPWFSVHHPSAIDPAVIRYAK 254 (527)
Q Consensus 178 ~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~-~~~MPWyAVpf~~~i~~~~~r~ik 254 (527)
||++|. ++.|.+.|++.++ .+++||=||+ |. -...+.|.+. ...+--..++||=+.|.. +.+.
T Consensus 110 ftpvCt~El~~l~~~~~ef~~------~gv~VigIS~-Ds-----~~~h~aw~~~~~~~~g~~~l~fPlLsD~~--~~ia 175 (261)
T PTZ00137 110 FTFVCPSELLGFSERLKEFEE------RGVKVLGVSV-DS-----PFSHKAWKELDVRQGGVSPLKFPLFSDIS--REVS 175 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-CC-----HHHHHHHHhhhhhhccccCcceEEEEcCC--hHHH
Confidence 877765 6679999999962 3599999986 31 1234556542 221111122232222322 5566
Q ss_pred HhhCCC-----CCcEEEEeCCCCceeccc
Q 009735 255 EKWDFR-----KKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 255 e~~~~~-----~iP~LVvL~pqGkv~~~n 278 (527)
+.|++. ..|...|+||+|++....
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 777774 489999999999998653
No 53
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.27 E-value=0.0014 Score=56.54 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=47.9
Q ss_pred ccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
-+||.|+|.|.|.||++|. .+.|.++.++. .+ +.|+-+ | .|++.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--------~~--v~~~~v-d-----~d~~~------------------ 58 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--------ND--VVFLLV-N-----GDEND------------------ 58 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--------CC--CEEEEE-E-----CCCCh------------------
Confidence 3589999999999999998 45677666554 12 455544 2 12211
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
..+.+.+.|++++.|+++++ .+|+++
T Consensus 59 ------~~~~l~~~~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 59 ------STMELCRREKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred ------HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence 11345677899999998777 789876
No 54
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.23 E-value=0.001 Score=64.61 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=71.4
Q ss_pred cCCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEE------EEEeccCCCCCcchhhH
Q 009735 153 ECPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEV------VWLPIVDRSTPWTEAKE 224 (527)
Q Consensus 153 dg~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEI------VwIpiVd~s~~w~D~~~ 224 (527)
++-+-+.++.+.|+||.+++-|-|.||++|+ .|.|..+ ++ .+|.+ +=|.. |.. .| .-
T Consensus 45 ~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~------~~~~~~~y~~t~~IN~-dd~-~~---~~ 109 (184)
T TIGR01626 45 KDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KA------AKFPPVKYQTTTIINA-DDA-IV---GT 109 (184)
T ss_pred CcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HH------cCCCcccccceEEEEC-ccc-hh---hH
Confidence 3455667888999999999999999999998 5678777 31 12555 55553 210 11 12
Q ss_pred HHH-----HHhhcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEE-EEeCCCCceecc
Q 009735 225 HKF-----EALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPIL-VVLDPQGRVVNQ 277 (527)
Q Consensus 225 ~~F-----~~~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~L-VvL~pqGkv~~~ 277 (527)
..| ++....-||-.+-.. ..+ .+...|++.++|.- +|+|++|+++..
T Consensus 110 ~~fVk~fie~~~~~~P~~~vllD----~~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 110 GMFVKSSAKKGKKENPWSQVVLD----DKG--AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred HHHHHHHHHHhcccCCcceEEEC----Ccc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 233 445667788766663 232 34568999999888 799999998853
No 55
>PRK15000 peroxidase; Provisional
Probab=97.23 E-value=0.0028 Score=61.76 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=63.0
Q ss_pred cCcEEEEEEecC-CCChh--HHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH-hhc-----CCCc
Q 009735 166 RRKSVLLLVSDL-DVSNE--ELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQY-----MMPW 236 (527)
Q Consensus 166 ~gK~VlLyfSal-~~~~~--~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~-~~~-----~MPW 236 (527)
+||.|+|+|=+. ||+.| |++.|.+.|+++++ .+++||=||. | +....+.|.+ +.+ .+|+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~------~g~~vigvS~-D-----~~~~~~~w~~~~~~~~g~~~i~f 100 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK------RGVEVVGVSF-D-----SEFVHNAWRNTPVDKGGIGPVKY 100 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----CHHHHHHHHhhHHHhCCccccCc
Confidence 799999888886 55554 46779999999962 3599999995 3 1223344433 222 2344
Q ss_pred eeecCCCCCCHHHHHHHHHhhCCC------CCcEEEEeCCCCceecc
Q 009735 237 FSVHHPSAIDPAVIRYAKEKWDFR------KKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~ 277 (527)
..+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 101 plls-----D~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 101 AMVA-----DVK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred eEEE-----CCC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 4333 322 4566677886 69999999999999874
No 56
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.14 E-value=0.0027 Score=53.12 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=48.8
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+||.|+++|.+.||++|. .+.|.++++... +. +.++-+ |.++.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~-------~~--~~~~~v--------d~~~~------------------ 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ-------GQ--FVLAKV--------NCDAQ------------------ 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC-------Cc--EEEEEE--------eccCC------------------
Confidence 478999999999999999 556777777663 12 445544 22211
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+.+.+.|++++.|++++++ +|+.+
T Consensus 56 -------~~l~~~~~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 56 -------PQIAQQFGVQALPTVYLFA-AGQPV 79 (96)
T ss_pred -------HHHHHHcCCCCCCEEEEEe-CCEEe
Confidence 2356778999999999997 89765
No 57
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.11 E-value=0.00099 Score=59.48 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=17.8
Q ss_pred ccCcEEEEEEecCCCChhHH
Q 009735 165 LRRKSVLLLVSDLDVSNEEL 184 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~ 184 (527)
-++|.|+|.|+|.||++|..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~ 36 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKA 36 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHH
Confidence 35899999999999999983
No 58
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.07 E-value=0.0031 Score=62.24 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCCccccCC--CCceeec-ccccCcEEEE-EEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCc
Q 009735 146 DDQLPLVECP--TKRKVSI-DVLRRKSVLL-LVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW 219 (527)
Q Consensus 146 ~~~~pl~dg~--~~~kV~I-s~L~gK~VlL-yfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w 219 (527)
|+..|-|... .| ++.. +.++||.|+| +|=+.||+.|- +..|.+.|++++. .+.+||=||+ |
T Consensus 10 G~~aPdF~l~~~~G-~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~------~g~~VigvS~-D----- 76 (215)
T PRK13191 10 GEKFPEMEVITTHG-KIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK------LNTELIGLSV-D----- 76 (215)
T ss_pred CCcCCCCEeecCCC-CEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEEC-C-----
Confidence 3434555332 34 4566 5589997665 77888876665 5679999999962 3589999995 3
Q ss_pred chhhHHHHHHhhc-----CCCceeecCCCCCCHHHHHHHHHhhCCC-------CCcEEEEeCCCCceecc
Q 009735 220 TEAKEHKFEALQY-----MMPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 220 ~D~~~~~F~~~~~-----~MPWyAVpf~~~i~~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 277 (527)
+......|.+... ..||..+- |.. +.+.+.|++- ..|...|+||+|++...
T Consensus 77 s~~~h~aw~~~~~~~~~~~i~fPlls-----D~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 77 SNISHIEWVMWIEKNLKVEVPFPIIA-----DPM--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CHHHHHHHHhhHHHhcCCCCceEEEE-----CCc--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 1333345543221 34443333 322 4555666753 37999999999998864
No 59
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.03 E-value=0.0023 Score=63.23 Aligned_cols=109 Identities=10% Similarity=0.025 Sum_probs=71.6
Q ss_pred CCCceeecccccCcEE-EEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhh
Q 009735 155 PTKRKVSIDVLRRKSV-LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQ 231 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~V-lLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~ 231 (527)
..|+.+..+.++||.| +++|=+.|||.|. +..|.+.|++.+. .+++||=||. | +.....+|.+..
T Consensus 16 ~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~------~gv~vigIS~-D-----~~~~~~~w~~~i 83 (215)
T PRK13599 16 TQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE------LNTELIGLSV-D-----QVFSHIKWVEWI 83 (215)
T ss_pred CCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH------CCCEEEEEeC-C-----CHHHHHHHHHhH
Confidence 4566666789999975 5788899988877 5569999999962 3589999985 3 133455565432
Q ss_pred cCCCceeecCCCCCCHHHHHHHHHhhCC-------CCCcEEEEeCCCCceecc
Q 009735 232 YMMPWFSVHHPSAIDPAVIRYAKEKWDF-------RKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 232 ~~MPWyAVpf~~~i~~~~~r~ike~~~~-------~~iP~LVvL~pqGkv~~~ 277 (527)
..+-=+.++||=..|.. +.+.+.|++ ...|...|+||+|++...
T Consensus 84 ~~~~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 84 KDNTNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred HHhcCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 21100134444333332 344556676 357999999999999876
No 60
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.00 E-value=0.0014 Score=56.56 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=49.4
Q ss_pred ccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 163 DVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 163 s~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
+.++||.|++.|.|.||++|. .+.|.++.++.+ + +.++-+ | .+. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--------~--~~~~~v-d-------~~~---------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--------Q--IRHLAI-E-------ESS---------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--------c--CceEEE-E-------CCC---------------C
Confidence 347999999999999999998 567888877763 1 334443 2 220 1
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 241 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+ ..+.+.|++++.|+++++++. .+.
T Consensus 61 ~---------~~l~~~~~V~~~PT~~lf~~g-~~~ 85 (100)
T cd02999 61 K---------PSLLSRYGVVGFPTILLFNST-PRV 85 (100)
T ss_pred C---------HHHHHhcCCeecCEEEEEcCC-cee
Confidence 1 245578899999999999854 443
No 61
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.00 E-value=0.014 Score=56.50 Aligned_cols=124 Identities=10% Similarity=0.150 Sum_probs=79.8
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH-HHHHHHHHHHHhhhccCCCCCeEEEEEeccCC--CCCcchhhHHHHHH--
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE-LFLLEQMYRESRQLSSRTESQYEVVWLPIVDR--STPWTEAKEHKFEA-- 229 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~-~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~--s~~w~D~~~~~F~~-- 229 (527)
.+|..|+++.++||.|++.|-|.||+.|. .+.|.++|++.+ +..++||=||.=+- ..+=+.++-++|-.
T Consensus 13 ~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~L~~L~~~y~------~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~ 86 (183)
T PRK10606 13 IDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQLENIQKAWA------DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTT 86 (183)
T ss_pred CCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHh------hCCeEEEEeeccccccCCCCCHHHHHHHHHHc
Confidence 46679999999999999999999988764 678999999985 24599999997210 00012334445542
Q ss_pred hhcCCCce---eecCCCCCCHHHHHHHHHhhCCCCC----------------cE----------EEEeCCCCceecccHH
Q 009735 230 LQYMMPWF---SVHHPSAIDPAVIRYAKEKWDFRKK----------------PI----------LVVLDPQGRVVNQNAL 280 (527)
Q Consensus 230 ~~~~MPWy---AVpf~~~i~~~~~r~ike~~~~~~i----------------P~----------LVvL~pqGkv~~~nA~ 280 (527)
+--+.|=+ .|.-+. ..++-+||++....... |. =-++|++|+|+..
T Consensus 87 ~g~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r--- 161 (183)
T PRK10606 87 WGVTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR--- 161 (183)
T ss_pred cCCCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE---
Confidence 22233322 111111 23578999875543211 11 4678999999865
Q ss_pred HHHHHhCCccccCC
Q 009735 281 HMMWIWGSVAFPFS 294 (527)
Q Consensus 281 ~mI~~wG~~AfPFT 294 (527)
|+...-|-+
T Consensus 162 -----~~~~~~p~~ 170 (183)
T PRK10606 162 -----FSPDMTPED 170 (183)
T ss_pred -----ECCCCCCCH
Confidence 777777854
No 62
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.95 E-value=0.0042 Score=52.67 Aligned_cols=67 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.+|.|+++|++.||++|. .+.|.++.+++. +++.++.|-+ |++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-------~~v~~~~id~--------d~~~------------------- 57 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD-------GAVHFVEIDI--------DEDQ------------------- 57 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC-------CceEEEEEEC--------CCCH-------------------
Confidence 468999999999999998 567888877763 2455555432 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
-+.+.+++.+.|+++++. +|+++
T Consensus 58 --------~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 58 --------EIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred --------HHHHHCCCeeccEEEEEE-CCeEE
Confidence 234577899999999995 78877
No 63
>PRK13189 peroxiredoxin; Provisional
Probab=96.93 E-value=0.0065 Score=60.20 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=64.0
Q ss_pred eeeccc-ccCcEEEE-EEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH-hhcC
Q 009735 159 KVSIDV-LRRKSVLL-LVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA-LQYM 233 (527)
Q Consensus 159 kV~Is~-L~gK~VlL-yfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~-~~~~ 233 (527)
++.+++ ++||.|+| +|=+.||+.|- +..|.+.|++.+. .+.+||-||. | +.....+|-+ +.+.
T Consensus 26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~------~~v~VigvS~-D-----~~~~h~aw~~~~~~~ 93 (222)
T PRK13189 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE------LNTELIGLSI-D-----QVFSHIKWVEWIKEK 93 (222)
T ss_pred CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH------cCCEEEEEEC-C-----CHHHHHHHHHhHHHh
Confidence 466655 69996654 67888877766 6679999999962 4589999986 3 1223334433 2221
Q ss_pred CCceeecCCCCCCHHHHHHHHHhhCCC-------CCcEEEEeCCCCceecc
Q 009735 234 MPWFSVHHPSAIDPAVIRYAKEKWDFR-------KKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 234 MPWyAVpf~~~i~~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 277 (527)
+. ..++||=..|.. +.+.+.|++. ..|..+|+||+|++...
T Consensus 94 ~g-~~i~fPllsD~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 94 LG-VEIEFPIIADDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred cC-cCcceeEEEcCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 00 012333222222 4555666754 46999999999998543
No 64
>PRK10996 thioredoxin 2; Provisional
Probab=96.81 E-value=0.0058 Score=55.96 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=49.2
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
++|.|+|+|++.||++|. .+.|.+++++.. ++ +.|+-+ |.++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~-------~~--v~~~~v--------d~~~------------------- 94 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS-------GK--VRFVKV--------NTEA------------------- 94 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC-------CC--eEEEEE--------eCCC-------------------
Confidence 489999999999999998 456777777653 23 555544 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
. ..+.+.|++++.|++++++ +|+++..
T Consensus 95 --~----~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 95 --E----RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred --C----HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 0 2356788999999999885 8987753
No 65
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.79 E-value=0.0039 Score=52.18 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=46.6
Q ss_pred EEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCC
Q 009735 169 SVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 246 (527)
Q Consensus 169 ~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~ 246 (527)
.|+|+|.+.||++|. .+.+.+++++.+. ...++.++-| |.+. .
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~~~~~v----------d~~~----------------~----- 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN----ENPSVKIAKV----------DCTQ----------------H----- 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhc----cCCcEEEEEE----------ECCC----------------C-----
Confidence 499999999999998 5679999998851 1234555444 2111 0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
..+.+.|++++.|+++++ ++|+.+
T Consensus 63 ----~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 ----RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred ----hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 134456899999999999 677654
No 66
>PTZ00051 thioredoxin; Provisional
Probab=96.71 E-value=0.0048 Score=51.65 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=46.7
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.++.|+|+|.+.||++|+. +.|.++.++. . ++.++.+ |.++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--------~--~~~~~~v--------d~~~------------------- 59 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEY--------T--KMVFVKV--------DVDE------------------- 59 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--------C--CcEEEEE--------ECcc-------------------
Confidence 3689999999999999983 4566655543 1 2666665 2211
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
...+.+.|++++.|+++++ .+|+++.
T Consensus 60 ------~~~~~~~~~v~~~Pt~~~~-~~g~~~~ 85 (98)
T PTZ00051 60 ------LSEVAEKENITSMPTFKVF-KNGSVVD 85 (98)
T ss_pred ------hHHHHHHCCCceeeEEEEE-eCCeEEE
Confidence 1245677899999998877 6888763
No 67
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.61 E-value=0.011 Score=50.76 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=46.2
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.++.|+|+|+|.||++|. .+.|.+++++.+ +.. +.|+-+ | .|. +
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~------~~~--~~~~~v-d-------~d~-----------------~- 61 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG------DDL--LHFATA-E-------ADT-----------------I- 61 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC------CCc--EEEEEE-e-------CCC-----------------H-
Confidence 488999999999999999 557888888763 122 334432 2 121 0
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+ +.+.|++++.|+++++. +|+.+
T Consensus 62 ----~----~~~~~~v~~~Pt~~~~~-~g~~~ 84 (102)
T cd02948 62 ----D----TLKRYRGKCEPTFLFYK-NGELV 84 (102)
T ss_pred ----H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence 1 23677999999998885 77654
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.60 E-value=0.0074 Score=54.80 Aligned_cols=78 Identities=9% Similarity=0.161 Sum_probs=54.3
Q ss_pred cCcEEEEEEec-------CCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCc
Q 009735 166 RRKSVLLLVSD-------LDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW 236 (527)
Q Consensus 166 ~gK~VlLyfSa-------l~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPW 236 (527)
+||.|+++|+| .||++|. -+.|.++.++.. .+..++.|=+ |....|.|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-------~~v~fv~Vdv-d~~~~w~d~-------------- 77 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-------EDCVFIYCDV-GDRPYWRDP-------------- 77 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-------CCCEEEEEEc-CCcccccCc--------------
Confidence 57899999999 9999999 467888888763 2356666642 211111111
Q ss_pred eeecCCCCCCHHHHHHHHHhhCCC-CCcEEEEeCCCCceeccc
Q 009735 237 FSVHHPSAIDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQN 278 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~n 278 (527)
..-+...++++ ++|+++++...++++.++
T Consensus 78 -------------~~~~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 78 -------------NNPFRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred -------------chhhHhccCcccCCCEEEEEcCCceecchh
Confidence 12344577888 999999999888888666
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.49 E-value=0.012 Score=51.57 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=51.2
Q ss_pred cccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecC
Q 009735 164 VLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 241 (527)
Q Consensus 164 ~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf 241 (527)
...||.|+++|.+.||++|. .+.+.++.++++. . ++.+.-+ | .+.
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~------~--~v~~~~v-d-------~d~----------------- 67 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP------L--GVGIATV-N-------AGH----------------- 67 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh------c--CceEEEE-e-------ccc-----------------
Confidence 34789999999999999998 5678888888841 1 2344433 2 121
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 242 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 242 ~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
-+.+.+.|++++.|+++++. +|+.+..
T Consensus 68 --------~~~l~~~~~V~~~Pt~~i~~-~g~~~~~ 94 (111)
T cd02963 68 --------ERRLARKLGAHSVPAIVGII-NGQVTFY 94 (111)
T ss_pred --------cHHHHHHcCCccCCEEEEEE-CCEEEEE
Confidence 02355778999999999994 8887643
No 70
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.46 E-value=0.016 Score=48.19 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=50.0
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+++.++++|.+.||++|. .+.|.++.+..+ .+.++.+..+.+ |++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~-----~~~~~~~~~~d~--------~~~-------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK-----GDPDIVLAKVDA--------TAE-------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhc-----cCCceEEEEEEc--------cch--------------------
Confidence 689999999999999998 466777777763 222455555432 211
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
..+.+.|++++.|++++++++|.+
T Consensus 59 -------~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 59 -------KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred -------HHHHHhCCCCcCCEEEEecCCCcc
Confidence 234577899999999999988864
No 71
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.36 E-value=0.017 Score=49.42 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=46.8
Q ss_pred ccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
.+++.|+++|.+.||++|. .+.|.+++++.+. .+ ..+.+..+ |.+. +
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~--~~~~~~~v--------d~~~----------------~- 61 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS----SG--SPVRVGKL--------DATA----------------Y- 61 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh----cC--CcEEEEEE--------ECcc----------------C-
Confidence 3568999999999999999 5679999888852 12 23555543 2111 1
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeC
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLD 269 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~ 269 (527)
..+.+.|++++.|+++++.
T Consensus 62 --------~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 --------SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred --------HhHHhhcCCccccEEEEEc
Confidence 1345678999999999994
No 72
>PRK09381 trxA thioredoxin; Provisional
Probab=96.35 E-value=0.018 Score=49.45 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=48.3
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+++|.+.||++|. .+.|.++.++.. +++.+.-|-+ |...
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~-------~~~~~~~vd~--------~~~~-------------------- 65 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ-------GKLTVAKLNI--------DQNP-------------------- 65 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhC-------CCcEEEEEEC--------CCCh--------------------
Confidence 78999999999999998 567888888773 2344444422 2111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
.+.++|++++.|+++++ ++|+++.
T Consensus 66 -------~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 66 -------GTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred -------hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 13467899999999999 6888763
No 73
>PHA02278 thioredoxin-like protein
Probab=96.32 E-value=0.0091 Score=52.50 Aligned_cols=71 Identities=14% Similarity=0.317 Sum_probs=45.9
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+++.|+++|.|.||+||. .+.|.++-++. ..+.+++.|=+ |+..++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~-------~~~~~~~~vdv----------d~~~~d--------------- 60 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG-------DIKKPILTLNL----------DAEDVD--------------- 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh-------cCCceEEEEEC----------Cccccc---------------
Confidence 578999999999999999 34565554332 12244555533 221110
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
...+.+.|+++++|+++++. +|+.+
T Consensus 61 ------~~~l~~~~~I~~iPT~i~fk-~G~~v 85 (103)
T PHA02278 61 ------REKAVKLFDIMSTPVLIGYK-DGQLV 85 (103)
T ss_pred ------cHHHHHHCCCccccEEEEEE-CCEEE
Confidence 12256788999999999996 35554
No 74
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.27 E-value=0.0085 Score=49.97 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=39.7
Q ss_pred ceEEEEEccCC-hhHHHHHHHHHHHHHHHhC--CceeEEEeccCCchhhhhhhh
Q 009735 327 QKHICLYGGED-LEWVRKFTALMGAVARAAG--IALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 327 gK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~--~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
||+++|||.+. -..|+++.+.+.++++..+ ..+++|+|+.|...+..++.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~ 54 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFL 54 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHH
Confidence 89999999884 2556999999999987644 999999999997766665544
No 75
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=96.22 E-value=0.018 Score=48.93 Aligned_cols=68 Identities=12% Similarity=0.052 Sum_probs=48.2
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.|+.++|+|.+.||++|. .+.+.++.++++ ..+.++-|-+ |.++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-------~~~~~~~v~~--------~~~~------------------- 62 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-------GLVQVAAVDC--------DEDK------------------- 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-------CCceEEEEec--------Cccc-------------------
Confidence 367899999999999998 346777766653 2366666643 2110
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCc
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR 273 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGk 273 (527)
.+.+.+.|++++.|+++++++.|+
T Consensus 63 ------~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 ------NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred ------cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123556789999999999998874
No 76
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.19 E-value=0.019 Score=47.77 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
+|.|+++|.+.||++|. .+.|.++.+++ ...+.|+-+ |.++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~---------~~~i~~~~v--------d~~~-------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA---------FPSVLFLSI--------EAEE-------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh---------CCceEEEEE--------cccc--------------------
Confidence 68999999999999998 33455555554 125666654 3221
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
...+.+.|++.+.|+++++. +|+++.
T Consensus 57 -----~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 82 (97)
T cd02984 57 -----LPEISEKFEITAVPTFVFFR-NGTIVD 82 (97)
T ss_pred -----CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence 12355678999999999995 888763
No 77
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.07 E-value=0.03 Score=48.59 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=47.4
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+||.|++.|.+.||++|. .+.+.++.++++ +.++.+.-|-+ |.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~------~~~~~~~~vd~--------d~~~------------------- 66 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLA------GSNVKVAKFNA--------DGEQ------------------- 66 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc------cCCeEEEEEEC--------Cccc-------------------
Confidence 478999999999999998 456777777763 22455555532 2100
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCc
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGR 273 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGk 273 (527)
..+.++.+++++.|+++++++.|+
T Consensus 67 ------~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 67 ------REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred ------hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 012244579999999999988764
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.98 E-value=0.038 Score=46.67 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=43.2
Q ss_pred ccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
++|+ ++|+|.|.||++|. .+.+.++.+..+ +.++.+.-|-. |++
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~------~~~v~~~~vd~--------~~~------------------- 60 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSD------DLGINVAKVDV--------TQE------------------- 60 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhc------cCCeEEEEEEc--------cCC-------------------
Confidence 4566 67999999999998 445666655432 22344333321 111
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
..+.+.|++++.|+++++ ++|++
T Consensus 61 --------~~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 61 --------PGLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred --------HhHHHHcCCcccCEEEEe-CCCCE
Confidence 124567899999999886 88875
No 79
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.81 E-value=0.05 Score=44.83 Aligned_cols=66 Identities=21% Similarity=0.290 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
+|.|+|+|.+.||++|.. +.|.++.++.. +...++.|-. |.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-------~~~~~~~vd~--------~~~--------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-------GKVKFVKLNV--------DEN--------------------- 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-------CCeEEEEEEC--------CCC---------------------
Confidence 579999999999999883 45666665542 3466666632 111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+.+.+.|++++.|+++++ ++|+++
T Consensus 58 ------~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 ------PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred ------HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 124466799999999999 677754
No 80
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.80 E-value=0.019 Score=53.14 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=60.1
Q ss_pred cCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 166 RRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~-----L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
+||.|+|+|.+.||++|.... =.++-+.++ ++| |.|.+.. +++|....
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~-------~~F--v~V~l~~---d~td~~~~--------------- 74 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ-------EDF--IMLNLVH---ETTDKNLS--------------- 74 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH-------hCe--EEEEEEe---ccCCCCcC---------------
Confidence 589999999999999998331 233344442 246 5555421 12221100
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccCChhhHHHhhhh
Q 009735 241 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKE 304 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~~ 304 (527)
++ + .++|+++++||+|+++.+ +.--++...|-+.+++++.|.+-
T Consensus 75 -~~--------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~~ 118 (130)
T cd02960 75 -PD--------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIEN 118 (130)
T ss_pred -cc--------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHHH
Confidence 01 1 368999999999998864 35667888888889988887653
No 81
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=95.67 E-value=0.067 Score=45.33 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=45.0
Q ss_pred ccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
-+++.|+++|.+.||++|. .+.+.++-++++ +. +.+.-+ |.++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~-------~~--~~~~~v--------d~~~~----------------- 61 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD-------GV--IRIGAV--------NCGDD----------------- 61 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc-------Cc--eEEEEE--------eCCcc-----------------
Confidence 3568899999999999998 455666665552 23 344433 22110
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
..+.+.+++++.|+++++ ++|+.
T Consensus 62 --------~~~~~~~~v~~~Pt~~~~-~~g~~ 84 (101)
T cd03003 62 --------RMLCRSQGVNSYPSLYVF-PSGMN 84 (101)
T ss_pred --------HHHHHHcCCCccCEEEEE-cCCCC
Confidence 134567799999999999 77864
No 82
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.64 E-value=0.026 Score=63.29 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.2
Q ss_pred cCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 166 RRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~---L--~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
+||.|++.|+|.||++|.... + .++.++++ ++ +++-+ | |++.+.
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--------~~--~~v~v-D----vt~~~~---------------- 521 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--------DT--VLLQA-D----VTANNA---------------- 521 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--------CC--EEEEE-E----CCCCCh----------------
Confidence 489999999999999998431 2 34444442 34 45543 2 443221
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 241 HPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
..+.+.++|++.+.|+++++|++|+.++
T Consensus 522 --------~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 --------EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred --------hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234567889999999999999998853
No 83
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.51 E-value=0.045 Score=45.63 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=47.0
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
+|.|+++|.+.||++|. .+.+.++.+.++ ...+ +.++.+ |.+++ +
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~-----~~~~--~~~~~i--------d~~~~---------------~--- 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA-----NEDD--VVIAKV--------DADEA---------------N--- 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhC-----CCCC--EEEEEE--------ECCCc---------------c---
Confidence 57899999999999998 456778777773 1223 455544 22221 1
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCc
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGR 273 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGk 273 (527)
..+.+.|++++.|+++++++.|+
T Consensus 65 ------~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ------KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ------hhhHHhCCCCCcCEEEEEeCCCC
Confidence 23456679999999999998764
No 84
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.49 E-value=0.047 Score=46.93 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=48.8
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+++|.+.||++|. .+.+.+++++++.. ....-.+.|..+ |.++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~~~~~~~v--------d~d~-------------------- 66 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEE---FPDAGKVVWGKV--------DCDK-------------------- 66 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhc---cCCCCcEEEEEE--------ECCC--------------------
Confidence 57899999999999998 45788888887521 111113555554 2211
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
-+.+.+.|++++.|+++++ ++|+.
T Consensus 67 -----~~~l~~~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 67 -----ESDIADRYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred -----CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence 0235677899999999999 67874
No 85
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.42 E-value=0.1 Score=42.36 Aligned_cols=67 Identities=12% Similarity=0.066 Sum_probs=46.0
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+++.++++|.+.||++|. .+.+.++.+.++ .+..+.++=|.. ++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~~~~v~~----------~~------------------- 59 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK-----GDGKVVVAKVDC----------TA------------------- 59 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc-----cCCceEEEEeec----------cc-------------------
Confidence 445899999999999998 345777777763 123444443321 11
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCC
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQG 272 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqG 272 (527)
...+.+.+++++.|++++++++|
T Consensus 60 ------~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 ------NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred ------hHHHHHhCCCCCCCEEEEEcCCC
Confidence 12445677999999999999886
No 86
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.37 E-value=0.026 Score=52.94 Aligned_cols=110 Identities=10% Similarity=0.129 Sum_probs=66.8
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHh--------CCceeEEEeccCCchhhhhhhhhhhccccccCCCCCCcchh
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAA--------GIALEMLYVGKSNPKEKARRIISTISVEKLSHTLPDPTLIW 396 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~--------~~~~E~v~Vgkd~~~e~v~~~~~~i~~e~ls~~~~d~t~v~ 396 (527)
.||.+.|||.+.+ ..|++|++.+.+++++. +.+||+++|+.|...+.+++.++. -.+ .|.. ++
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~---~~~--~~~~---~p 95 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKD---MPK--KWLF---LP 95 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHH---CCC--Ccee---ec
Confidence 8999999999942 44599999999987531 236999999999777666665422 111 1111 01
Q ss_pred hhhHHhhhhhhhhhhcCCCCCCChhHHHHHHHhcccCCCCceEEEecCCcccccchhhHH
Q 009735 397 FFWVRLESMWHSKMKFGTKVQQDPIMQEIVTMLSFDGSDQGWAVISRGPHMAKAKDETIL 456 (527)
Q Consensus 397 ~FW~rleSm~~sK~q~g~~~~~D~i~qeI~~LL~~~~~~~GWavlskGs~~~~g~G~~~~ 456 (527)
|..........+.+- ..|+++.-+| +.|=.+-..|...+.-+|...+
T Consensus 96 -~~~~~~~~l~~~y~v----------~~iPt~vlId--~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 96 -FEDEFRRELEAQFSV----------EELPTVVVLK--PDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred -ccchHHHHHHHHcCC----------CCCCEEEEEC--CCCcEEeeChHHHHHHHHHHHH
Confidence 111111112222221 2578888888 4477776666666666775443
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.33 E-value=0.72 Score=45.07 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=79.7
Q ss_pred CcEEEEEEe--cCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVS--DLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfS--al~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|.+|+| |.||++|.. +..+++++.. .-++.+|.++-+ |.++
T Consensus 20 ~~~i~~f~~~~a~wC~~C~~--~~p~l~~la~----~~~~~~i~~v~v--------d~~~-------------------- 65 (215)
T TIGR02187 20 PVEIVVFTDNDKEGCQYCKE--TEQLLEELSE----VSPKLKLEIYDF--------DTPE-------------------- 65 (215)
T ss_pred CeEEEEEcCCCCCCCCchHH--HHHHHHHHHh----hCCCceEEEEec--------CCcc--------------------
Confidence 556666666 599999984 4556666642 123567888865 3221
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCceec--ccHH---HHHHHhCCccccCChhhHHHhhhhcccceeeccccCCCC
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN--QNAL---HMMWIWGSVAFPFSVAREEALWKEETWRIDLLADSVDPV 319 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~--~nA~---~mI~~wG~~AfPFT~~r~e~L~~~e~w~lelL~d~id~~ 319 (527)
-+.+.+.|++++.|++++++. |+.+. ..|. +-+.. .++++-.. .-....+++.
T Consensus 66 -----~~~l~~~~~V~~~Pt~~~f~~-g~~~~~~~~G~~~~~~l~~-----------~i~~~~~~-----~~~~~~L~~~ 123 (215)
T TIGR02187 66 -----DKEEAEKYGVERVPTTIILEE-GKDGGIRYTGIPAGYEFAA-----------LIEDIVRV-----SQGEPGLSEK 123 (215)
T ss_pred -----cHHHHHHcCCCccCEEEEEeC-CeeeEEEEeecCCHHHHHH-----------HHHHHHHh-----cCCCCCCCHH
Confidence 134567789999999999974 44431 1121 10100 01111000 0000011211
Q ss_pred cc---ccccCceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhh
Q 009735 320 IP---TWIMEQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKA 373 (527)
Q Consensus 320 I~---~~i~egK~I~LYgg~d~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v 373 (527)
.. +-...+..|-+|....-.+|+..-+.+.+++.+ ...+.++.|..+...+.+
T Consensus 124 ~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~ 179 (215)
T TIGR02187 124 TVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLA 179 (215)
T ss_pred HHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHH
Confidence 10 012345566666666567778888888888765 345666667666554443
No 88
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.24 E-value=0.059 Score=48.78 Aligned_cols=71 Identities=7% Similarity=0.077 Sum_probs=45.7
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 009735 166 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI 245 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i 245 (527)
.++.|++.|+|.||+||. .+..+++++.++ -.+. +.|+-+ |.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk--~m~P~le~la~~---~~~~--v~f~kV--------DvD~--------------------- 56 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCM--QMDEVLAKIAED---VSNF--AVIYLV--------DIDE--------------------- 56 (114)
T ss_pred CCCEEEEEEECCCChhHH--HHHHHHHHHHHH---ccCc--eEEEEE--------ECCC---------------------
Confidence 467899999999999998 344455555321 1122 334432 2222
Q ss_pred CHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 246 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 246 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
..-+.++|+++++|+++++- +|+.+..
T Consensus 57 ----~~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 57 ----VPDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred ----CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 12355778999999999997 6777654
No 89
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.16 E-value=0.089 Score=46.50 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=40.0
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|.++|++.||++|.. +.|.++-.+. +..+++.|=+ ++ +
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--------~~i~~~~vd~----------d~--~----------------- 64 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS--------DKLKLEIYDF----------DE--D----------------- 64 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc--------CceEEEEEeC----------Cc--C-----------------
Confidence 456889999999999973 3454442221 2355555522 21 0
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCC
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQ 271 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pq 271 (527)
+.+.+.|++++.|++++++..
T Consensus 65 ------~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 ------KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred ------HHHHHHcCCCcCCEEEEEeCC
Confidence 135567899999999999753
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.12 E-value=0.084 Score=47.63 Aligned_cols=38 Identities=3% Similarity=0.101 Sum_probs=28.2
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 166 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
.|+.+.+||++.|||+|+. |.|.++=++ .+..|.+|-+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---------~~~~~y~vdv 61 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---------TKAPIYYIDS 61 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---------cCCcEEEEEC
Confidence 3678999999999999994 467665443 2366888864
No 91
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.15 Score=48.76 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=68.2
Q ss_pred CCCCceeecccccCcEEEEEEecCCCCh-hHHH--HHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHh
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSN-EELF--LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEAL 230 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~-~~~~--~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~ 230 (527)
+.+|..|.++.++||.|.|||=--+..| |-+. -+.+.|.+++ +-+.+|+=||. | +-...++|.+-
T Consensus 17 ~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~------~~~a~V~GIS~-D-----s~~~~~~F~~k 84 (157)
T COG1225 17 DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFE------KLGAVVLGISP-D-----SPKSHKKFAEK 84 (157)
T ss_pred cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHH------hCCCEEEEEeC-C-----CHHHHHHHHHH
Confidence 3455569999999999999997776444 4333 4777777775 23699999985 4 35667788764
Q ss_pred hcCCCceeecCCCCCCHHHHHHHHHhhCCC------------CCcEEEEeCCCCceec
Q 009735 231 QYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------------KKPILVVLDPQGRVVN 276 (527)
Q Consensus 231 ~~~MPWyAVpf~~~i~~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~ 276 (527)
+ .++|+=+.|.. +.+.+.|++- -++.-.|||++|++..
T Consensus 85 ~------~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 85 H------GLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred h------CCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 3 23332222333 2355556652 3578899999999975
No 92
>PTZ00102 disulphide isomerase; Provisional
Probab=94.96 E-value=0.071 Score=57.09 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=46.5
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
.||.|+|+|.|.||++|. .+.|.++-+..+ ..+.+-+.+|-. |.++
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~-----~~~~v~~~~id~--------~~~~------------------- 421 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYK-----DNDSIIVAKMNG--------TANE------------------- 421 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhc-----cCCcEEEEEEEC--------CCCc-------------------
Confidence 489999999999999998 345555555543 233455666532 1111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
.+.+.|++++.|+++++++.|++
T Consensus 422 --------~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 --------TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred --------cchhcCCCcccCeEEEEECCCcc
Confidence 12345688999999999987775
No 93
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=94.92 E-value=0.13 Score=43.01 Aligned_cols=63 Identities=10% Similarity=0.011 Sum_probs=42.8
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+|+|.+.||++|. .+.+.++.++.+ +.+.+.-+ |.++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~-------~~~~~~~i----------d~~~-------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK-------GIVKVGAV----------DADV-------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc-------CCceEEEE----------ECcc--------------------
Confidence 45699999999999988 456777776653 23444443 2111
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCC
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQ 271 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pq 271 (527)
...+.+.|++++.|+++++++.
T Consensus 61 -----~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 -----HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred -----hHHHHHHCCCCccCEEEEECCC
Confidence 1234567899999999999755
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=94.92 E-value=0.11 Score=43.38 Aligned_cols=71 Identities=17% Similarity=0.270 Sum_probs=46.5
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+++.++++|.+.||++|. .+.+.++.++++. ... ++++-+ | .+.+ .+
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-----~~~--~~~~~i-d-------~~~~--------------~~-- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-----DGK--GVLAAV-D-------CTKP--------------EH-- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-----CCc--eEEEEE-E-------CCCC--------------cc--
Confidence 467899999999999998 5578888887741 122 444433 2 1110 01
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
..+.+.+++++.|+++++. +|+++
T Consensus 65 -------~~~~~~~~i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 65 -------DALKEEYNVKGFPTFKYFE-NGKFV 88 (104)
T ss_pred -------HHHHHhCCCccccEEEEEe-CCCee
Confidence 2245667999999987774 67754
No 95
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=94.56 E-value=0.23 Score=42.09 Aligned_cols=66 Identities=9% Similarity=0.025 Sum_probs=42.3
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+++|.+.||++|.. +.+.++-++.+ +...+.-| |.++
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-------~~~~~~~v----------d~~~-------------------- 61 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALK-------GKVKVGSV----------DCQK-------------------- 61 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CCcEEEEE----------ECCc--------------------
Confidence 678999999999999983 34444444431 22333333 2110
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
.+.+.+.+++++.|+++++.+.|+.
T Consensus 62 -----~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 -----YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred -----hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1235567899999999999876443
No 96
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=94.31 E-value=0.31 Score=48.03 Aligned_cols=112 Identities=13% Similarity=0.267 Sum_probs=73.7
Q ss_pred cCCCCceeecccccCcEEEEEEecCC---CChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHH
Q 009735 153 ECPTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEA 229 (527)
Q Consensus 153 dg~~~~kV~Is~L~gK~VlLyfSal~---~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~ 229 (527)
....|+++....|+||.+++||.=-- .||-.+..|.++.++|.+ ..+.++.+|+|++ |+ +.|. .+.-++
T Consensus 53 ~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~---~~~~~v~vv~itv-DP---erDt-p~~lk~ 124 (207)
T COG1999 53 TDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGE---GEGDDVQVVFITV-DP---ERDT-PEVLKK 124 (207)
T ss_pred ecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcc---ccCCCEEEEEEEE-CC---CCCC-HHHHHH
Confidence 34677799999999999999999444 556667789999999963 4678999999996 63 4443 334444
Q ss_pred hhc--C-CCceeecCCCCCCHHHHHHHHHhhCC---------------CCCcEEEEeCCCCceec
Q 009735 230 LQY--M-MPWFSVHHPSAIDPAVIRYAKEKWDF---------------RKKPILVVLDPQGRVVN 276 (527)
Q Consensus 230 ~~~--~-MPWyAVpf~~~i~~~~~r~ike~~~~---------------~~iP~LVvL~pqGkv~~ 276 (527)
|-. - =+|-.+--+ .+..+.+...|++ .+-..+.++||+|++..
T Consensus 125 Y~~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 125 YAELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred HhcccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 444 1 125444442 2333433333333 34456788899998864
No 97
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.24 E-value=0.19 Score=39.72 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=41.6
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCH
Q 009735 168 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 247 (527)
Q Consensus 168 K~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~ 247 (527)
+.++|+|.+.||+.|.. +.+.++++.. ...++.++.|.. +. .
T Consensus 11 ~~~ll~~~~~~C~~C~~--~~~~~~~~~~----~~~~~~~~~i~~--------~~--------------------~---- 52 (93)
T cd02947 11 KPVVVDFWAPWCGPCKA--IAPVLEELAE----EYPKVKFVKVDV--------DE--------------------N---- 52 (93)
T ss_pred CcEEEEEECCCChhHHH--hhHHHHHHHH----HCCCceEEEEEC--------CC--------------------C----
Confidence 88999999999999972 2334444421 134566666653 11 1
Q ss_pred HHHHHHHHhhCCCCCcEEEEeCCCCc
Q 009735 248 AVIRYAKEKWDFRKKPILVVLDPQGR 273 (527)
Q Consensus 248 ~~~r~ike~~~~~~iP~LVvL~pqGk 273 (527)
+.+.+.|++.+.|+++++. +|+
T Consensus 53 ---~~~~~~~~v~~~P~~~~~~-~g~ 74 (93)
T cd02947 53 ---PELAEEYGVRSIPTFLFFK-NGK 74 (93)
T ss_pred ---hhHHHhcCcccccEEEEEE-CCE
Confidence 2234567999999999995 455
No 98
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=94.20 E-value=0.09 Score=43.57 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=45.7
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+++|.+.||++|.. +.|.++-.+.. .++.++-|- .++
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~-------~~v~~~~vd----------~~~-------------------- 59 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK-------DNVKFAKVD----------CDE-------------------- 59 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT-------TTSEEEEEE----------TTT--------------------
T ss_pred CCCEEEEEeCCCCCccccccceecccccccc-------cccccchhh----------hhc--------------------
Confidence 699999999999999984 34666655552 144444442 211
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
-+.+.+.|++++.|+++++...+.+.
T Consensus 60 -----~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 60 -----NKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp -----SHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred -----cchhhhccCCCCCCEEEEEECCcEEE
Confidence 03456778999999999997655443
No 99
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=93.99 E-value=0.47 Score=41.44 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=53.2
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCC
Q 009735 167 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 246 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~ 246 (527)
++.|+++|.+.||++|.. +..+++++-.. -.+ +.|+-+ |.++
T Consensus 24 ~~~vvv~F~a~~c~~C~~--l~~~l~~la~~----~~~--v~f~~v--------d~~~---------------------- 65 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKI--LDSHLEELAAK----YPE--TKFVKI--------NAEK---------------------- 65 (113)
T ss_pred CCEEEEEEeCCCCCcHHH--HHHHHHHHHHH----CCC--cEEEEE--------Echh----------------------
Confidence 589999999999999983 34444444211 012 344433 2221
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccCChhhHHH
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEA 300 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~ 300 (527)
. .+.+.|++++.|+++++. +|+.+.. -.+.....| ..|+...++.
T Consensus 66 --~--~l~~~~~i~~~Pt~~~f~-~G~~v~~-~~G~~~~~~---~~~~~~~l~~ 110 (113)
T cd02957 66 --A--FLVNYLDIKVLPTLLVYK-NGELIDN-IVGFEELGG---DDFTTEDLEK 110 (113)
T ss_pred --h--HHHHhcCCCcCCEEEEEE-CCEEEEE-EecHHHhCC---CCCCHHHHHH
Confidence 1 455678999999999886 5776632 222334455 6777666654
No 100
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=93.92 E-value=0.38 Score=42.49 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=47.7
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
+|.|+++|.+.||++|. .+.+.++.++++.. .+. |-+..|| .+.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~----~~~---v~~~~vd-------~~~~~------------------ 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW----RPV---VRVAAVD-------CADEE------------------ 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc----CCc---eEEEEEe-------ccchh------------------
Confidence 47999999999999998 45677777777521 112 2223333 11100
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHH
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNAL 280 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~ 280 (527)
...+.+.|++++.|+++++.+.+ ....+|.
T Consensus 67 -----~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 67 -----NVALCRDFGVTGYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred -----hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence 12345677999999999996544 5555443
No 101
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.89 E-value=0.4 Score=41.87 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=45.4
Q ss_pred ccCcEEEEEEecCCCChhHHHH---H--HHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceee
Q 009735 165 LRRKSVLLLVSDLDVSNEELFL---L--EQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 239 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~~~---L--~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAV 239 (527)
=++|.+++||.+.||++|.... | .++-+.++ ++ .|++.+ | .++.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-------~~--~v~~~~-d----~~~~----------------- 63 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-------EN--FIFWQC-D----IDSS----------------- 63 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-------hC--EEEEEe-c----CCCc-----------------
Confidence 3589999999999999987542 2 23333342 12 222222 1 1111
Q ss_pred cCCCCCCHHHHHHHHHhhCCCCCcEEEEeCC-CCceecc
Q 009735 240 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDP-QGRVVNQ 277 (527)
Q Consensus 240 pf~~~i~~~~~r~ike~~~~~~iP~LVvL~p-qGkv~~~ 277 (527)
.+ ..+.+.+++.+.|+++++|| +|+++..
T Consensus 64 --------e~-~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 64 --------EG-QRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred --------cH-HHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 11 23456678999999999999 7988753
No 102
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.71 E-value=0.099 Score=47.16 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=36.8
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 323 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 323 ~i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.++.|+++.+|||+.+ .|||.|.|.+.+++++ ....++||..|.
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~ 63 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN 63 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence 4678999999999974 8889999999999875 557799998874
No 103
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.42 E-value=0.42 Score=38.39 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=24.7
Q ss_pred EEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 171 LLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 171 lLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
..+|++.||++|. .+.|.++.++.+ .+++++.|-+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-------~~~~~~~vd~ 39 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMG-------DAVEVEYINV 39 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhc-------CceEEEEEeC
Confidence 4578889999998 556877777652 3477777743
No 104
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=93.12 E-value=0.31 Score=48.80 Aligned_cols=66 Identities=15% Similarity=0.184 Sum_probs=45.8
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.++++|.+.||++|. .+.+.++.++++ +. |.+.-+ | .++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~-------~~--v~~~~V-D-------~~~~------------------- 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK-------GQ--VNVADL-D-------ATRA------------------- 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcC-------CC--eEEEEe-c-------Cccc-------------------
Confidence 47899999999999998 456777776663 12 333322 2 2210
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
..+.++|++++.|++++++ +|+++
T Consensus 96 ------~~l~~~~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 96 ------LNLAKRFAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred ------HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence 2356788999999999998 78765
No 105
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=92.77 E-value=0.28 Score=43.42 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
++.|+++|.+.||++|.. +.|.++-++. .+ +.|+-+ |.++
T Consensus 22 ~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--------~~--i~f~~V--------d~~~-------------------- 63 (113)
T cd02989 22 SERVVCHFYHPEFFRCKIMDKHLEILAKKH--------LE--TKFIKV--------NAEK-------------------- 63 (113)
T ss_pred CCcEEEEEECCCCccHHHHHHHHHHHHHHc--------CC--CEEEEE--------Eccc--------------------
Confidence 578999999999999983 3455544332 12 334433 2221
Q ss_pred CCHHHHHHHHHhhCCCCCcEEEEeCCCCceec-ccHHHHHHHhCCccccCChhhHHH
Q 009735 245 IDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN-QNALHMMWIWGSVAFPFSVAREEA 300 (527)
Q Consensus 245 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~-~nA~~mI~~wG~~AfPFT~~r~e~ 300 (527)
...+.+.|+++++|+++++. +|+++. -.|.+ ..-|+ .-|+.+++|.
T Consensus 64 -----~~~l~~~~~v~~vPt~l~fk-~G~~v~~~~g~~--~~~~~--~~~~~~~~e~ 110 (113)
T cd02989 64 -----APFLVEKLNIKVLPTVILFK-NGKTVDRIVGFE--ELGGK--DDFSTETLEK 110 (113)
T ss_pred -----CHHHHHHCCCccCCEEEEEE-CCEEEEEEECcc--ccCCC--CCCCHHHHHH
Confidence 12366888999999999997 777663 33332 23333 3455555543
No 106
>PTZ00062 glutaredoxin; Provisional
Probab=92.50 E-value=0.22 Score=49.28 Aligned_cols=127 Identities=12% Similarity=0.167 Sum_probs=73.4
Q ss_pred cEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCH
Q 009735 168 KSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDP 247 (527)
Q Consensus 168 K~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~ 247 (527)
+.++|||+|.||++|. .+..+.++|.+. - -+|.|+.+ |++
T Consensus 18 g~~vl~f~a~w~~~C~--~m~~vl~~l~~~----~--~~~~F~~V--------~~d------------------------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYE--QLMDVCNALVED----F--PSLEFYVV--------NLA------------------------ 57 (204)
T ss_pred CcEEEEEeCCCCcchH--HHHHHHHHHHHH----C--CCcEEEEE--------ccc------------------------
Confidence 5578999999999998 455666666421 1 24777776 333
Q ss_pred HHHHHHHHhhCCCCCcEEEEeCCCCcee----cccHHHHHH---HhCCccccCChhhHHHhhhhcccceeeccccCCCCc
Q 009735 248 AVIRYAKEKWDFRKKPILVVLDPQGRVV----NQNALHMMW---IWGSVAFPFSVAREEALWKEETWRIDLLADSVDPVI 320 (527)
Q Consensus 248 ~~~r~ike~~~~~~iP~LVvL~pqGkv~----~~nA~~mI~---~wG~~AfPFT~~r~e~L~~~e~w~lelL~d~id~~I 320 (527)
|++.++|++|++. +|+.+ ..|+..+.. .|-.. .. .++ +...+
T Consensus 58 ---------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~~~---------------~~~~v 106 (204)
T PTZ00062 58 ---------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-SED---------------TVEKI 106 (204)
T ss_pred ---------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-HHH---------------HHHHH
Confidence 6899999999995 55544 445554432 22110 00 000 11123
Q ss_pred cccccCceEEEEE--ccCChhHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 009735 321 PTWIMEQKHICLY--GGEDLEWVRKFTALMGAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 321 ~~~i~egK~I~LY--gg~d~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd 367 (527)
.++|+. +-|.|| |.....|| -|..++..+-+..+++++.+-|..|
T Consensus 107 ~~li~~-~~Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 107 ERLIRN-HKILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred HHHHhc-CCEEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 333444 334444 43344566 4555566665667999998888765
No 107
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=92.41 E-value=0.39 Score=45.30 Aligned_cols=29 Identities=7% Similarity=-0.086 Sum_probs=22.0
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHH
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRES 194 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~l 194 (527)
+++.|+++|.+.||++|. .+.|.++.++.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~ 76 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKY 76 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence 357899999999999998 34566665554
No 108
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=92.26 E-value=0.18 Score=45.86 Aligned_cols=91 Identities=11% Similarity=0.169 Sum_probs=52.5
Q ss_pred CccccCCCCcee-ecc-----cccC-cEEEEEEecCCCCh--hHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCc
Q 009735 149 LPLVECPTKRKV-SID-----VLRR-KSVLLLVSDLDVSN--EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPW 219 (527)
Q Consensus 149 ~pl~dg~~~~kV-~Is-----~L~g-K~VlLyfSal~~~~--~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w 219 (527)
.|-|||.....+ .=+ +.+. +.|+++|-+.||+| |....+..+..++-+.- -.+.+ |.+.-+
T Consensus 2 ~~~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~-l~~~~--v~~~kV------- 71 (120)
T cd03065 2 FPEYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV-LEDKG--IGFGLV------- 71 (120)
T ss_pred CcccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH-hhcCC--CEEEEE-------
Confidence 577888875442 112 2333 46778888889988 77444443333332110 01222 555544
Q ss_pred chhhHHHHHHhhcCCCceeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 220 TEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 220 ~D~~~~~F~~~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
|.++ . .-+.++|+++++|+|+++. +|+.+.
T Consensus 72 -D~d~-----------------------~--~~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 72 -DSKK-----------------------D--AKVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred -eCCC-----------------------C--HHHHHHcCCccccEEEEEE-CCEEEE
Confidence 2222 1 3456788999999999996 888664
No 109
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=92.02 E-value=2.1 Score=39.98 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=61.1
Q ss_pred CCceeeccc-ccCcEEEEEEe-cCCCChh--H-HHHHHHHHHHHhhhccCCCCCe-EEEEEeccCCCCCcchhhHHHHHH
Q 009735 156 TKRKVSIDV-LRRKSVLLLVS-DLDVSNE--E-LFLLEQMYRESRQLSSRTESQY-EVVWLPIVDRSTPWTEAKEHKFEA 229 (527)
Q Consensus 156 ~~~kV~Is~-L~gK~VlLyfS-al~~~~~--~-~~~L~~iY~~lk~~~~~~~~~f-EIVwIpiVd~s~~w~D~~~~~F~~ 229 (527)
++..|.++. ++||.|+|||= +.|+|.| | +..|.+.|+++++ .+. +|+=||. | +-...++|.+
T Consensus 17 ~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~------~g~~~V~~iS~-D-----~~~~~~~~~~ 84 (155)
T cd03013 17 PPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA------KGVDEVICVSV-N-----DPFVMKAWGK 84 (155)
T ss_pred CCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH------CCCCEEEEEEC-C-----CHHHHHHHHH
Confidence 367899999 58876665555 4455444 5 6669999999962 246 5888885 3 2344666765
Q ss_pred hhcCCCceeecCCCCCCHHHHHHHHHhhCCC------C-----CcEEEEeCCCCceecc
Q 009735 230 LQYMMPWFSVHHPSAIDPAVIRYAKEKWDFR------K-----KPILVVLDPQGRVVNQ 277 (527)
Q Consensus 230 ~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~------~-----iP~LVvL~pqGkv~~~ 277 (527)
-..-. ++|+=+.|.. +.+.+.|++. + ....+|+| +|++...
T Consensus 85 ~~~~~----~~f~lLsD~~--~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 85 ALGAK----DKIRFLADGN--GEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred hhCCC----CcEEEEECCC--HHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 44431 1222111222 3444444541 1 46678889 6998753
No 110
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=91.83 E-value=1 Score=37.76 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=42.3
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCC
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSA 244 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~ 244 (527)
|+.++++|.+.||++|+ .+.|.++=++.+ +++.++||-. ++ |
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~-------~~v~f~~vd~----------~~--~----------------- 55 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK-------GKLLFVVVDA----------DD--F----------------- 55 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC-------CeEEEEEEch----------Hh--h-----------------
Confidence 88999999999997765 334555544442 4577888732 22 1
Q ss_pred CCHHHHHHHHHhhCCC--CCcEEEEeCC
Q 009735 245 IDPAVIRYAKEKWDFR--KKPILVVLDP 270 (527)
Q Consensus 245 i~~~~~r~ike~~~~~--~iP~LVvL~p 270 (527)
..+.+.|+++ +.|++++++.
T Consensus 56 ------~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 56 ------GRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred ------HHHHHHcCCChhhCCEEEEEec
Confidence 1134556887 8999999987
No 111
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=91.54 E-value=0.97 Score=38.65 Aligned_cols=72 Identities=14% Similarity=0.036 Sum_probs=45.6
Q ss_pred cccccCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecC
Q 009735 162 IDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 241 (527)
Q Consensus 162 Is~L~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf 241 (527)
++.|++..-..+|.+.||+.|.. +.++.+++.+. ..++++..+-+ |+.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~--~~~~~~~l~~~----~~~i~~~~vd~--------~~~------------------ 54 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPD--VVQALNLMAVL----NPNIEHEMIDG--------ALF------------------ 54 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHH--HHHHHHHHHHH----CCCceEEEEEh--------HhC------------------
Confidence 34688998889999999999983 34445666422 12344444422 211
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 242 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 242 ~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
.-+.++|++.++|++|+ +|+++..
T Consensus 55 ---------~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 55 ---------QDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred ---------HHHHHHcCCccCCEEEE---CCEEEEe
Confidence 12334679999999986 6877763
No 112
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=91.21 E-value=1.1 Score=37.27 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.8
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHh
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESR 195 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk 195 (527)
+|.|+|+|.+.||++|. .+.+.++.+.++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~ 48 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLK 48 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhc
Confidence 58899999999999998 456777777764
No 113
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.69 Score=41.16 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=48.4
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCC
Q 009735 167 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 246 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~ 246 (527)
+|-|.+.|+|.||+||.. +...|++|.. .-.+ ++|+=+ |-|+
T Consensus 21 ~kliVvdF~a~wCgPCk~--i~P~~~~La~----~y~~--v~Flkv--------dvde---------------------- 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKA--IAPKFEKLAE----KYPD--VVFLKV--------DVDE---------------------- 62 (106)
T ss_pred CCeEEEEEECCCCcchhh--hhhHHHHHHH----HCCC--CEEEEE--------eccc----------------------
Confidence 689999999999999984 3556677742 2233 555543 2222
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCC---CCceecccHH
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDP---QGRVVNQNAL 280 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~p---qGkv~~~nA~ 280 (527)
..-+.+.|+++..|+++++-. .++++..|..
T Consensus 63 ---~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 63 ---LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred ---CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 234556789999999999942 3455555544
No 114
>smart00594 UAS UAS domain.
Probab=91.02 E-value=0.87 Score=40.68 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=43.8
Q ss_pred ccCcEEEEEEecCCCChhHHHH-----HHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceee
Q 009735 165 LRRKSVLLLVSDLDVSNEELFL-----LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSV 239 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~~~-----L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAV 239 (527)
=++|.+++||.+.||++|.... =.++-+-++ ++ .|.+.. | +++.
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~-------~~--fv~~~~-d----v~~~----------------- 73 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR-------EN--FIFWQV-D----VDTS----------------- 73 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH-------cC--EEEEEe-c----CCCh-----------------
Confidence 4689999999999999887432 223333332 12 344432 1 1111
Q ss_pred cCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCC
Q 009735 240 HHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQG 272 (527)
Q Consensus 240 pf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqG 272 (527)
++ ..+.+.+++.+-|+++++||+|
T Consensus 74 --------eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 74 --------EG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred --------hH-HHHHHhcCcCCCCEEEEEecCC
Confidence 12 3466778999999999999997
No 115
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=90.61 E-value=0.76 Score=42.14 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=40.8
Q ss_pred cccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecC
Q 009735 164 VLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 241 (527)
Q Consensus 164 ~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf 241 (527)
.+.++.-.|.|...||+.|. +|.|..+=+.. ...++=+|+- |++.+-.+.|
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~--------p~i~~~~i~r--------d~~~el~~~~----------- 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEAN--------PNIEVRIILR--------DENKELMDQY----------- 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH---------TTEEEEEE-H--------HHHHHHTTTT-----------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC--------CCCeEEEEEe--------cCChhHHHHH-----------
Confidence 45666778999999999987 67788887764 2467777753 5555433222
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceec
Q 009735 242 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVN 276 (527)
Q Consensus 242 ~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 276 (527)
+. .+.+.||++|++|.+|+++.
T Consensus 91 -----------lt--~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 91 -----------LT--NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp -----------TT---SS--SSEEEEE-TT--EEE
T ss_pred -----------Hh--CCCeecCEEEEEcCCCCEeE
Confidence 11 36778999999999999873
No 116
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.53 E-value=0.88 Score=43.64 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=55.6
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCC
Q 009735 167 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 246 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~ 246 (527)
++.|+++|++.||++|.. |..++++|-.. - -++.|+-| |.++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~--m~~~l~~LA~~----~--~~vkF~kV--------d~d~---------------------- 124 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAA--LNSSLLCLAAE----Y--PAVKFCKI--------RASA---------------------- 124 (175)
T ss_pred CcEEEEEEECCCCchHHH--HHHHHHHHHHH----C--CCeEEEEE--------eccc----------------------
Confidence 458999999999999983 34444454311 1 14777766 2221
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCceec-ccHHHHHHHhCCccccCChhhHHHhh
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDPQGRVVN-QNALHMMWIWGSVAFPFSVAREEALW 302 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~-~nA~~mI~~wG~~AfPFT~~r~e~L~ 302 (527)
. .+.+.|+++.+|+++++- +|+.+. -.+. ...|.. -|+.+++|.+-
T Consensus 125 -~---~l~~~f~v~~vPTlllyk-~G~~v~~~vG~---~~~~g~--~f~~~~le~~L 171 (175)
T cd02987 125 -T---GASDEFDTDALPALLVYK-GGELIGNFVRV---TEDLGE--DFDAEDLESFL 171 (175)
T ss_pred -h---hhHHhCCCCCCCEEEEEE-CCEEEEEEech---HHhcCC--CCCHHHHHHHH
Confidence 0 345667999999999986 577774 2232 234444 67777776543
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=90.39 E-value=1.5 Score=30.92 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=39.8
Q ss_pred EEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCHH
Q 009735 171 LLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPA 248 (527)
Q Consensus 171 lLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~~ 248 (527)
+++|.+.||+.|.. ..+.+. . ....++.++++++-+ ..+..+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~-------~~~~~~~~~~~~~~~--------~~~~~~~------------------- 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-A-------LLNKGVKFEAVDVDE--------DPALEKE------------------- 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-H-------hhCCCcEEEEEEcCC--------ChHHhhH-------------------
Confidence 36788889988873 346665 1 234579999998622 2111111
Q ss_pred HHHHHHHhhCCCCCcEEEEeCCC
Q 009735 249 VIRYAKEKWDFRKKPILVVLDPQ 271 (527)
Q Consensus 249 ~~r~ike~~~~~~iP~LVvL~pq 271 (527)
...+++...|.+++.+++
T Consensus 46 -----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 -----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred -----HHhCCCccccEEEEEeCC
Confidence 345688889999999887
No 118
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=90.35 E-value=0.55 Score=41.93 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=37.6
Q ss_pred CceEEEEEccCChhHH---HHHHHHHHHHHHHh-C--CceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGEDLEWV---RKFTALMGAVARAA-G--IALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~d~~Wi---~~FT~~~~~i~~~~-~--~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
.||.+.|||.+ .|| ++..+.+.+++++. + ..+++++|+-|...+.+++.+
T Consensus 16 ~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~ 71 (132)
T cd02964 16 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYF 71 (132)
T ss_pred CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 89999999998 555 88888888886642 2 379999999886655554433
No 119
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=90.30 E-value=0.98 Score=40.82 Aligned_cols=69 Identities=12% Similarity=0.237 Sum_probs=44.4
Q ss_pred cCcEEEEEEecCC--CChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecC
Q 009735 166 RRKSVLLLVSDLD--VSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHH 241 (527)
Q Consensus 166 ~gK~VlLyfSal~--~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf 241 (527)
.|..+.|+|++.| ||+|. -+.|.++=++. ++...++-|=+ |++
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~-------~~~v~f~kVdi--------d~~------------------ 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF-------PGRFRAAVVGR--------ADE------------------ 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHC-------CCcEEEEEEEC--------CCC------------------
Confidence 3467788999997 99988 34565554443 23344444422 211
Q ss_pred CCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 242 PSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 242 ~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
..|.++|+++++|+|+++. +|+.+..
T Consensus 73 ---------~~la~~f~V~sIPTli~fk-dGk~v~~ 98 (111)
T cd02965 73 ---------QALAARFGVLRTPALLFFR-DGRYVGV 98 (111)
T ss_pred ---------HHHHHHcCCCcCCEEEEEE-CCEEEEE
Confidence 2466778999999999986 5776643
No 120
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=90.04 E-value=1.6 Score=39.11 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=43.4
Q ss_pred ccCcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCC
Q 009735 165 LRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~ 242 (527)
-.++.|++.|.|.||++|.. +.+.++-++++ +. +.++-+ | .++.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~-------~~--v~~~~V-d-------~d~~----------------- 72 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS-------DQ--VLFVAI-N-------CWWP----------------- 72 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc-------CC--eEEEEE-E-------CCCC-----------------
Confidence 46789999999999999983 44555555542 22 555544 3 2210
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCc
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGR 273 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGk 273 (527)
. ...++++++++.|++.++ .+|+
T Consensus 73 ----~---~l~~~~~~I~~~PTl~lf-~~g~ 95 (113)
T cd03006 73 ----Q---GKCRKQKHFFYFPVIHLY-YRSR 95 (113)
T ss_pred ----h---HHHHHhcCCcccCEEEEE-ECCc
Confidence 0 122356789999999999 5665
No 121
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=89.49 E-value=1.3 Score=46.72 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=31.0
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEe
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLP 211 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIp 211 (527)
.++.|+++|.+.||++|. .+.+.++.+.++ ....++.++.|-
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~i~~~~id 406 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYK----DAESDVVIAKMD 406 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhh----cCCCcEEEEEEE
Confidence 489999999999999998 456777777774 112357777664
No 122
>PTZ00102 disulphide isomerase; Provisional
Probab=89.45 E-value=0.76 Score=49.29 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=50.4
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
+++.++++|-|.||++|. .+.+.++.+.++. ....|++..+ |.++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~------~~~~i~~~~v--------d~~~------------------- 94 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE------KKSEIVLASV--------DATE------------------- 94 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh------cCCcEEEEEE--------ECCC-------------------
Confidence 478899999999999998 4457777777642 1246777775 2221
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCce
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 274 (527)
-+.+.++|++++.|+++++...+.+
T Consensus 95 ------~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 ------EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ------CHHHHHhcCCCcccEEEEEECCceE
Confidence 1346677899999999999876554
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=89.28 E-value=1.1 Score=47.43 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=47.2
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
++|.++++|.|.||++|. .+.+.++.+.++. .+. .|.|+-+ |.++.
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~----~~~--~v~~~~v--------d~~~~------------------ 64 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK----KGP--PIKLAKV--------DATEE------------------ 64 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh----cCC--ceEEEEE--------ECCCc------------------
Confidence 467899999999999988 3578888888752 222 3556554 22210
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCC
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQG 272 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqG 272 (527)
+.+.+++++.+.|+++++...+
T Consensus 65 -------~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 65 -------KDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred -------HHHHHhCCCccccEEEEEeCCc
Confidence 2456778999999999996433
No 124
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=2.2 Score=42.23 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=71.0
Q ss_pred ceeecccccCcEEEEEEecCC---CChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCC
Q 009735 158 RKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMM 234 (527)
Q Consensus 158 ~kV~Is~L~gK~VlLyfSal~---~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~M 234 (527)
.+|..++..||.+.|||=-.| .||-|+..+...|++.+. .+-||+=||+ | +.....+..+.-..-
T Consensus 24 ~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~------~g~eVigvS~-D-----s~fsH~aW~~~~~~~ 91 (194)
T COG0450 24 EEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK------RGVEVIGVST-D-----SVFSHKAWKATIREA 91 (194)
T ss_pred eEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH------cCCEEEEEec-C-----cHHHHHHHHhcHHhc
Confidence 489999999999999998888 678888899999999973 4599999996 3 122233333321111
Q ss_pred Ccee-ecCCCCCCHHHHHHHHHhhCCCC------CcEEEEeCCCCceec
Q 009735 235 PWFS-VHHPSAIDPAVIRYAKEKWDFRK------KPILVVLDPQGRVVN 276 (527)
Q Consensus 235 PWyA-Vpf~~~i~~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~ 276 (527)
.=+. |+||-.-| ..+.|.+.|++-. .=.+.|+||+|++-.
T Consensus 92 ~gi~~i~~PmiaD--~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~ 138 (194)
T COG0450 92 GGIGKIKFPMIAD--PKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRH 138 (194)
T ss_pred CCccceecceEEc--CchhHHHHcCCcccCCCcceeEEEEECCCCeEEE
Confidence 1111 55653222 2367778888853 235789999998753
No 125
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=88.29 E-value=0.9 Score=40.15 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=41.9
Q ss_pred CCCCccccccCceEEEEEccCC-hhHHHHHHHHHHHHHHHh---CCceeEEEeccCCchhhhhhh
Q 009735 316 VDPVIPTWIMEQKHICLYGGED-LEWVRKFTALMGAVARAA---GIALEMLYVGKSNPKEKARRI 376 (527)
Q Consensus 316 id~~I~~~i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~---~~~~E~v~Vgkd~~~e~v~~~ 376 (527)
-...+++. .||++.|||.+. -..|++..+.+.+++++. +..+++++|+-|...+.+++-
T Consensus 9 ~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~ 71 (131)
T cd03009 9 GKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDY 71 (131)
T ss_pred CCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHH
Confidence 33344444 799999999883 244588888888876642 347999999999776655543
No 126
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=87.07 E-value=4.2 Score=41.19 Aligned_cols=102 Identities=10% Similarity=0.203 Sum_probs=54.9
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEe--ccCCCC------CcchhhHH-HHHHhhcCCCc
Q 009735 166 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLP--IVDRST------PWTEAKEH-KFEALQYMMPW 236 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIp--iVd~s~------~w~D~~~~-~F~~~~~~MPW 236 (527)
.+|+++..||+..||-|.- .+.++++.. ..++.+|.|+| +..+.. -|...|++ .++.+.....-
T Consensus 116 ~ak~~I~vFtDp~CpyC~k-----l~~~l~~~~--~~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQ-----FWQQARPWV--DSGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCCeEEEEEECCCChhHHH-----HHHHHHHHh--hcCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 4788899999999999963 233332111 11346666666 333211 13333333 34444433321
Q ss_pred eeecCCCCCCHHHHHH------HHHhhCCCCCcEEEEeCCCCce
Q 009735 237 FSVHHPSAIDPAVIRY------AKEKWDFRKKPILVVLDPQGRV 274 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~------ike~~~~~~iP~LVvL~pqGkv 274 (527)
-.+.-....+.+..+. +-+.++++|-|++|+.|.+|++
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1111111112223333 3378999999999999999985
No 127
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=85.97 E-value=2.5 Score=46.79 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=44.9
Q ss_pred cCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
++|.|++.|.|.||++|. .+.+.++.++++ +.+..++.|=+ |.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~------~~~v~~~kVdv--------D~~~------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLA------GSGVKVAKFRA--------DGDQ------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cCCcEEEEEEC--------CCCc-------------------
Confidence 678899999999999998 345666666653 12344555532 2111
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCC
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQG 272 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqG 272 (527)
.....+.|++++.|+++++...+
T Consensus 417 ------~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 417 ------KEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred ------cHHHHHHcCCCccceEEEEECCC
Confidence 12334567999999999996543
No 128
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=85.27 E-value=7 Score=40.55 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=44.8
Q ss_pred CCCCceeecccccCcEEEEEEecC---CCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCC
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDL---DVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR 215 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal---~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~ 215 (527)
..+|+.|.-.+|+||=+++||.=. |+||||+-.|.++-+++... .+-..==|||++ |+
T Consensus 126 d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~---~~~~~~PlFIsv-DP 186 (280)
T KOG2792|consen 126 DHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK---PGLPPVPLFISV-DP 186 (280)
T ss_pred ecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhcc---CCCCccceEEEe-Cc
Confidence 346678888999999999999865 47889999999999999642 222222799985 65
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=85.22 E-value=3.3 Score=40.43 Aligned_cols=30 Identities=7% Similarity=-0.115 Sum_probs=20.9
Q ss_pred cccCcEEEEEEecCCCChhHHHHHHHHHHHHh
Q 009735 164 VLRRKSVLLLVSDLDVSNEELFLLEQMYRESR 195 (527)
Q Consensus 164 ~L~gK~VlLyfSal~~~~~~~~~L~~iY~~lk 195 (527)
.+++..+.+.|++.||++|.. +..+.+++.
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~--~~~~l~~l~ 159 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPY--AVLMAHKFA 159 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHH--HHHHHHHHH
Confidence 356666778899999999983 334555554
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=85.16 E-value=4.7 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.5
Q ss_pred hhCCCCCcEEEEeCCCCcee
Q 009735 256 KWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 256 ~~~~~~iP~LVvL~pqGkv~ 275 (527)
.+++.++|++++ +|+++
T Consensus 44 ~~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 44 EAGVTATPGVAV---DGELV 60 (76)
T ss_pred HcCCCcCCEEEE---CCEEE
Confidence 369999999999 88777
No 131
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=84.06 E-value=9.9 Score=34.19 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred CCCceeecccccCcEEEEEEecCCCChhH-HHHHHHHHHHHhhhccCCCCCeEEEEEecc
Q 009735 155 PTKRKVSIDVLRRKSVLLLVSDLDVSNEE-LFLLEQMYRESRQLSSRTESQYEVVWLPIV 213 (527)
Q Consensus 155 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~-~~~L~~iY~~lk~~~~~~~~~fEIVwIpiV 213 (527)
.+|+.|+++.++||.+++.=-|..|.--. ...|+++|++.+. ..|+|+-.|.-
T Consensus 9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~L~~L~~ky~~------~gl~ILaFPcn 62 (108)
T PF00255_consen 9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQLNELYEKYKD------KGLEILAFPCN 62 (108)
T ss_dssp TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHHHHHHHHHHGG------GTEEEEEEEBS
T ss_pred CCCCEECHHHcCCCEEEEEecccccCCccccHHHHHHHHHHhc------CCeEEEeeehH
Confidence 46689999999999999999898876533 4469999999962 35999999984
No 132
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=82.15 E-value=2.1 Score=42.11 Aligned_cols=126 Identities=17% Similarity=0.296 Sum_probs=84.3
Q ss_pred CccccCCCCceeecccccCcEEEEEEecCC---CChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHH
Q 009735 149 LPLVECPTKRKVSIDVLRRKSVLLLVSDLD---VSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEH 225 (527)
Q Consensus 149 ~pl~dg~~~~kV~Is~L~gK~VlLyfSal~---~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~ 225 (527)
..+.|| .-+.++++.++||+|+|+|=.++ .||.|+......|.+.+. -+-||+.+|. |.
T Consensus 16 ~aVVdG-~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~------~n~eVig~S~--------DS--- 77 (196)
T KOG0852|consen 16 TAVVDG-EFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK------LNTEVLGIST--------DS--- 77 (196)
T ss_pred eEEEcC-cceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh------cCCeEEEEec--------cc---
Confidence 346677 44589999999999999998888 678999999999999963 4589999985 31
Q ss_pred HHHHhhcCCCceeecCCCC--------CCHHHHHHHHHhhCC----CCCc--EEEEeCCCCceec--c----------cH
Q 009735 226 KFEALQYMMPWFSVHHPSA--------IDPAVIRYAKEKWDF----RKKP--ILVVLDPQGRVVN--Q----------NA 279 (527)
Q Consensus 226 ~F~~~~~~MPWyAVpf~~~--------i~~~~~r~ike~~~~----~~iP--~LVvL~pqGkv~~--~----------nA 279 (527)
.++-.-|-+.|-... +=....+-|.+.|++ .|++ -|.++||+|-+-. - .+
T Consensus 78 ----~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~ 153 (196)
T KOG0852|consen 78 ----VFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDET 153 (196)
T ss_pred ----hhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHH
Confidence 234445655543110 001234677777777 3554 4888999886532 2 34
Q ss_pred HHHHHHhCCccccCChhhHHHh
Q 009735 280 LHMMWIWGSVAFPFSVAREEAL 301 (527)
Q Consensus 280 ~~mI~~wG~~AfPFT~~r~e~L 301 (527)
+.+| +||-||....|-.
T Consensus 154 lRLv-----qAfQ~td~~geVc 170 (196)
T KOG0852|consen 154 LRLV-----QAFQFTDEHGEVC 170 (196)
T ss_pred HHHH-----HHHhhhhccCccc
Confidence 4444 6788876665533
No 133
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=81.82 E-value=7.4 Score=32.01 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=18.5
Q ss_pred ccCcEEEEEEecCCCChhHHH
Q 009735 165 LRRKSVLLLVSDLDVSNEELF 185 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~~ 185 (527)
-+||.|+++|++.||++|...
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l 35 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKL 35 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHH
T ss_pred HcCCCEEEEEECCCCHhHHHH
Confidence 358999999999999999854
No 134
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=81.67 E-value=4.2 Score=37.11 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=21.6
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHh
Q 009735 166 RRKSVLLLVSDLDVSNEELFLLEQMYRESR 195 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~L~~iY~~lk 195 (527)
.+|.|.|-|+|.||+||.. +.+++.++-
T Consensus 13 ~~klVVVdF~a~WC~pCk~--mdp~l~ela 40 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQ--LDDILSKTS 40 (114)
T ss_pred CCCEEEEEEeCCCChhHHH--HHHHHHHHH
Confidence 6899999999999999962 344555553
No 135
>PLN02309 5'-adenylylsulfate reductase
Probab=80.86 E-value=5.7 Score=44.01 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=43.1
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 166 RRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
++|.|+++|.+.||++|.. +.+.++.++++ +. .|.|.-+ |.+..
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~------~~--~V~f~kV--------D~d~~------------------ 409 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLA------GS--GVKVAKF--------RADGD------------------ 409 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhc------cC--CeEEEEE--------ECCCc------------------
Confidence 5889999999999999983 34555555542 12 3555543 22210
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCC
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQG 272 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqG 272 (527)
-....++.|++++.|+++++.+.+
T Consensus 410 -----~~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 410 -----QKEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred -----chHHHHhhCCCceeeEEEEEeCCC
Confidence 001233467999999999996543
No 136
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=80.78 E-value=4.7 Score=34.16 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=31.7
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccC
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~---~~i~~~~~~~~E~v~Vgkd 367 (527)
+++||.+.|||++++ .||+.|.+.+ .++++..+..+.++.|.-+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 55 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT 55 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC
Confidence 568999999999963 6668888766 4665543437777777654
No 137
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=80.16 E-value=4.4 Score=36.96 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=34.0
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccCC
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~---~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.++||.|+|++|+|+ .||+.+.... .+|++..+..|-.|.|..+.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~ 60 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE 60 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc
Confidence 458999999999974 8888886632 46666556689888887653
No 138
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=79.90 E-value=1.1 Score=32.49 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=21.2
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCcccceee
Q 009735 490 HCNR-LILPGEAGRIPEKVVCAECGRRMEEFI 520 (527)
Q Consensus 490 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~v 520 (527)
.|.+ +++....+. .+.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 4666 555543344 88999999999887754
No 139
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=76.33 E-value=8.7 Score=37.52 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=53.8
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCC
Q 009735 167 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAID 246 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~ 246 (527)
++.|.+.|++.||++|.. |.+++++|-.. -. ++.|+-| +.++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~--m~~~l~~LA~k----~~--~vkFvkI--------~ad~~--------------------- 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRL--LNQHLSELARK----FP--DTKFVKI--------ISTQC--------------------- 144 (192)
T ss_pred CCEEEEEEECCCCchHHH--HHHHHHHHHHH----CC--CCEEEEE--------EhHHh---------------------
Confidence 468999999999999984 44555555321 11 3566665 22210
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCceecc-cHHHHHHHhCCccccCChhhHHHhh
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ-NALHMMWIWGSVAFPFSVAREEALW 302 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~-nA~~mI~~wG~~AfPFT~~r~e~L~ 302 (527)
.+.|+++++|+|++.- +|+++.. -|. ...|.. =||...+|.+-
T Consensus 145 -------~~~~~i~~lPTlliyk-~G~~v~~ivG~---~~~gg~--~~~~~~lE~~L 188 (192)
T cd02988 145 -------IPNYPDKNLPTILVYR-NGDIVKQFIGL---LEFGGM--NTTMEDLEWLL 188 (192)
T ss_pred -------HhhCCCCCCCEEEEEE-CCEEEEEEeCc---hhhCCC--CCCHHHHHHHH
Confidence 1456889999999995 6666532 222 224555 67777776553
No 140
>PHA02125 thioredoxin-like protein
Probab=76.31 E-value=11 Score=30.61 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.6
Q ss_pred HHHHhhCCCCCcEEE
Q 009735 252 YAKEKWDFRKKPILV 266 (527)
Q Consensus 252 ~ike~~~~~~iP~LV 266 (527)
.+.++|++++.|+++
T Consensus 37 ~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 37 ELTAKHHIRSLPTLV 51 (75)
T ss_pred HHHHHcCCceeCeEE
Confidence 456778999999987
No 141
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.85 E-value=5.4 Score=38.08 Aligned_cols=29 Identities=17% Similarity=-0.004 Sum_probs=24.2
Q ss_pred CcEEEEEEecCCCChhH--HHHHHHHHHHHh
Q 009735 167 RKSVLLLVSDLDVSNEE--LFLLEQMYRESR 195 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~--~~~L~~iY~~lk 195 (527)
+..|++=|.|.||.||. .++|+++=.+..
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~ 91 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYA 91 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhc
Confidence 57899999999999999 567888777663
No 142
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=74.85 E-value=6.4 Score=36.25 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=36.3
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
+..||.+.|||.+.+ .+|+.+.+.+.++++..+..+.++.|.-|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 468999999999963 667999999999987655567888887664
No 143
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=73.97 E-value=6.9 Score=34.25 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=37.6
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
.||.+.|||-+. -.-|++..+.+.++++.. .+.++.|+.+...+.+++.+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHH
Confidence 699999998772 233488888888887653 49999999877777777654
No 144
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=73.01 E-value=12 Score=31.37 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=34.9
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
+.+|.+.+||.+. -.+|+.+.+.+.+++++.+..+-++.|.-+..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~ 56 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED 56 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC
Confidence 4789999999875 47779999999999877655677777766643
No 145
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=72.77 E-value=8.5 Score=31.62 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=36.5
Q ss_pred ccC-ceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCch
Q 009735 324 IME-QKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPK 370 (527)
Q Consensus 324 i~e-gK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~ 370 (527)
+.+ ++.+.+||++++ .-|+.|.+.+.++++..+.++.++.|..+..+
T Consensus 13 i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 61 (103)
T PF00085_consen 13 INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK 61 (103)
T ss_dssp HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH
T ss_pred HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc
Confidence 445 899999999942 44599999999998875558888888887543
No 146
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=72.52 E-value=2.2 Score=31.94 Aligned_cols=30 Identities=23% Similarity=0.602 Sum_probs=20.7
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceee
Q 009735 490 HCNR-LILPGEAGRIPEKVVCAECGR-RMEEFI 520 (527)
Q Consensus 490 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v 520 (527)
.|.+ +++--.-+. ++.+.||+||. .+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~ 41 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVI 41 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEec
Confidence 4664 444333334 89999999999 888755
No 147
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=72.27 E-value=17 Score=33.32 Aligned_cols=79 Identities=14% Similarity=0.355 Sum_probs=40.8
Q ss_pred cCcEEEEEEec-------CCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCc
Q 009735 166 RRKSVLLLVSD-------LDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPW 236 (527)
Q Consensus 166 ~gK~VlLyfSa-------l~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPW 236 (527)
.|+.+.|||.+ +|||.|.. +.+.+.+.++. ++.-+|.+.+ .....|.|.+ ..|..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-------~~~~lv~v~V-G~r~~Wkdp~-n~fR~------- 81 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-------ENARLVYVEV-GDRPEWKDPN-NPFRT------- 81 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-------TTEEEEEEE----HHHHC-TT-SHHHH-------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-------CCceEEEEEc-CCHHHhCCCC-CCceE-------
Confidence 35666666654 37999984 56888887752 2466666653 1111233211 11111
Q ss_pred eeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 237 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
...|+++++|+|+-.+..+|.+-.
T Consensus 82 -----------------~p~~~l~~IPTLi~~~~~~rL~e~ 105 (119)
T PF06110_consen 82 -----------------DPDLKLKGIPTLIRWETGERLVEE 105 (119)
T ss_dssp -------------------CC---SSSEEEECTSS-EEEHH
T ss_pred -----------------cceeeeeecceEEEECCCCccchh
Confidence 125799999999999877776543
No 148
>PRK10996 thioredoxin 2; Provisional
Probab=71.29 E-value=7.8 Score=35.43 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=34.7
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 323 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 323 ~i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.+++||.++|||.+++ .-|+.+.+.+.++++..+..+.++.|..++
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~ 94 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA 94 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 4668999999999942 444899999999988766666666665553
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=70.03 E-value=16 Score=36.39 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=57.5
Q ss_pred eecccccCcEEEEEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCce
Q 009735 160 VSIDVLRRKSVLLLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWF 237 (527)
Q Consensus 160 V~Is~L~gK~VlLyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWy 237 (527)
--|..+.++.=++||-..+|+-|.. ++|..+=++- .++|+-||+ |. ..+|
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---------g~~v~~vs~--------DG---------~~~~-- 164 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---------GFSVIPVSL--------DG---------RPIP-- 164 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---------CCEEEEEec--------CC---------CCCc--
Confidence 3467888888888889999988873 4455544433 599999997 32 2333
Q ss_pred eecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccH
Q 009735 238 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA 279 (527)
Q Consensus 238 AVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA 279 (527)
++|.+- .| .-+.+.|++..-|.|++++|+++...+=|
T Consensus 165 ~fp~~~-~~----~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 165 SFPNPR-PD----PGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred CCCCCC-CC----HHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 222221 12 23556789999999999999885544433
No 150
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=69.69 E-value=9.8 Score=32.38 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=34.9
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
+||.+.|||-+. -..|++..+.+.++++.....+.++.++ +...+..++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~ 71 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFL 71 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHH
Confidence 599999999772 2444888888888876544568888776 44455555444
No 151
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=69.17 E-value=13 Score=29.05 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=32.6
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
+.+++.+.||+++. -.+|+++.+.+.++++. ...+.++.+.-++
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~ 51 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE 51 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC
Confidence 34557777777775 57889999999999775 5667777776653
No 152
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=69.08 E-value=15 Score=34.66 Aligned_cols=29 Identities=7% Similarity=-0.111 Sum_probs=21.8
Q ss_pred cCcEEEEEEecCCCChhHH--HHHHHHHHHH
Q 009735 166 RRKSVLLLVSDLDVSNEEL--FLLEQMYRES 194 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~--~~L~~iY~~l 194 (527)
.+|.|++-|+|.||+||.. +.|.++=+++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETI 52 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 5678999999999999983 4555554444
No 153
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.17 E-value=12 Score=39.49 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=61.8
Q ss_pred ecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCcee
Q 009735 161 SIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFS 238 (527)
Q Consensus 161 ~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyA 238 (527)
-+..-+.+.|+++|=+.||+||. ++.|.++=.+-+ +.|+.+=|=+ |++
T Consensus 37 V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~-------G~f~LakvN~--------D~~--------------- 86 (304)
T COG3118 37 VIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK-------GKFKLAKVNC--------DAE--------------- 86 (304)
T ss_pred HHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhC-------CceEEEEecC--------Ccc---------------
Confidence 34556778999999999999998 677888777654 5788888744 322
Q ss_pred ecCCCCCCHHHHHHHHHhhCCCCCcEEEEeC---C----CCceecccHHHHHHHhCCc
Q 009735 239 VHHPSAIDPAVIRYAKEKWDFRKKPILVVLD---P----QGRVVNQNALHMMWIWGSV 289 (527)
Q Consensus 239 Vpf~~~i~~~~~r~ike~~~~~~iP~LVvL~---p----qGkv~~~nA~~mI~~wG~~ 289 (527)
.-|.-.|+++.||+++++- | +|-.=-+--++++...+..
T Consensus 87 ------------p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 87 ------------PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ------------hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 2244567999999999883 2 3433344566777777766
No 154
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=67.97 E-value=15 Score=29.41 Aligned_cols=44 Identities=7% Similarity=-0.011 Sum_probs=34.8
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHh--CCceeEEEeccC
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARAA--GIALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~--~~~~E~v~Vgkd 367 (527)
+.+++.+.++|.++ -.+|+.|.+.+.++++.. +..+.++.|.-+
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 56777888888776 478899999999998765 577888888665
No 155
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=67.71 E-value=12 Score=31.52 Aligned_cols=46 Identities=4% Similarity=-0.084 Sum_probs=36.2
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
+++++.+.++|.+. -..|+++.+.+.++++..+..+.+..|.-++.
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~ 61 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc
Confidence 56789999999884 25569999999999887666678888877753
No 156
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=67.14 E-value=7.3 Score=32.03 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=35.1
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEeccCCchhh
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYVGKSNPKEK 372 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~---~~i~~~~~~~~E~v~Vgkd~~~e~ 372 (527)
-++||.|++++|+++ .||+.|...+ .++.+....+|-.+.|--+++...
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~ 66 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPN 66 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChh
Confidence 358999999999974 7788887755 455443456888888877655433
No 157
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=66.73 E-value=53 Score=31.41 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=50.7
Q ss_pred CcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCC--C-----CCcchhh-HHHHHHhhcCCC-ce
Q 009735 167 RKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDR--S-----TPWTEAK-EHKFEALQYMMP-WF 237 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~--s-----~~w~D~~-~~~F~~~~~~MP-Wy 237 (527)
+|+.+.+|++.+||.|... +..+++. ..+-.+.++.+|+..+ | .-|...+ .+.+..+....+ .-
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~-----~~~l~~~--~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKL-----EKELKPN--ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCEEEEEEECCCCccHHHH-----HHHHhhc--cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 7889999999999999632 2233210 2233444444454331 1 0132222 234444443321 10
Q ss_pred eecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 238 SVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 238 AVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+...-. .+......+-+.+++++.|++|+ ++|+++
T Consensus 150 ~~~~~~-~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 150 PAASCD-NPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CccccC-chHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 111111 12233345558999999999984 447764
No 158
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=66.59 E-value=18 Score=33.16 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=40.1
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHh-CCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAA-GIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~-~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
+||.+.|||-+. -..|++..+.+.+++++. +..+.++.|+.|++.+.++..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH
Confidence 789999999874 355688888888887653 4569999999998877766554
No 159
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=66.30 E-value=15 Score=29.98 Aligned_cols=54 Identities=11% Similarity=0.026 Sum_probs=38.8
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhC-CceeEEEeccCCc-hhhhhhhhhh
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAG-IALEMLYVGKSNP-KEKARRIIST 379 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~-~~~E~v~Vgkd~~-~e~v~~~~~~ 379 (527)
.||++.++|.+. -..|+.+.+.+.++.+..+ ..+.++.|+.|.. .|.+++.++.
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~ 74 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK 74 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence 489988888873 2446888888888866533 5788999998875 6666655533
No 160
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=66.08 E-value=14 Score=30.62 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=33.0
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
.|+.+.+||.+++ ..|+++.+.+.++++..+..+-++.|.-++.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC
Confidence 4889999999942 4469999999999876555666677766643
No 161
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=65.84 E-value=56 Score=29.46 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred ecccccCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeec
Q 009735 161 SIDVLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVH 240 (527)
Q Consensus 161 ~Is~L~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVp 240 (527)
+++.+++|+=.|.++|.+........+.+.+++-+ ..=..=.|+++.+++.......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~----~~l~eRdi~v~~i~~~~~~~~~------------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNR----CGLDERDIVVIVITGDGARSPG------------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhh----hccccCceEEEEEeCCcccccc-------------------
Confidence 45677887777777776543333333333333311 1112345888888763222111
Q ss_pred CCCCCCHHHHHHHHHhhCCC-CCcEEEEeCCCCceecc
Q 009735 241 HPSAIDPAVIRYAKEKWDFR-KKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 241 f~~~i~~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~ 277 (527)
...+....+.+++.|++. +--.+|++|.||.+=..
T Consensus 59 --~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 59 --KPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred --CcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 223556778888888974 34789999999977543
No 162
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=65.13 E-value=14 Score=31.59 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=33.7
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC-CceeEEEeccC
Q 009735 323 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAG-IALEMLYVGKS 367 (527)
Q Consensus 323 ~i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~-~~~E~v~Vgkd 367 (527)
.++.|+.+.|||.+.+ .-|+.+.+.+.+++++.+ ..+.++.|.-|
T Consensus 13 ~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 13 LLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred HHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 3568999999999942 444999999999977644 34677777766
No 163
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=64.87 E-value=24 Score=27.35 Aligned_cols=22 Identities=5% Similarity=-0.257 Sum_probs=14.6
Q ss_pred EEEecCCCChhHHHHHHHHHHHHh
Q 009735 172 LLVSDLDVSNEELFLLEQMYRESR 195 (527)
Q Consensus 172 LyfSal~~~~~~~~~L~~iY~~lk 195 (527)
.+|++.||++|.. +.++.+++.
T Consensus 4 ~~f~~~~C~~C~~--~~~~l~~l~ 25 (67)
T cd02973 4 EVFVSPTCPYCPD--AVQAANRIA 25 (67)
T ss_pred EEEECCCCCCcHH--HHHHHHHHH
Confidence 5788899999963 334445553
No 164
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=62.58 E-value=3.8 Score=29.70 Aligned_cols=13 Identities=38% Similarity=0.899 Sum_probs=9.5
Q ss_pred ceeecCCCCcccc
Q 009735 505 EKVVCAECGRRME 517 (527)
Q Consensus 505 ~~i~CpeC~R~ME 517 (527)
..+.||+|+|++-
T Consensus 3 ~~~~C~nC~R~v~ 15 (33)
T PF08209_consen 3 PYVECPNCGRPVA 15 (33)
T ss_dssp -EEE-TTTSSEEE
T ss_pred CeEECCCCcCCcc
Confidence 4689999999875
No 165
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=62.20 E-value=11 Score=32.15 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=35.0
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHH---HHHhCCceeEEEeccCCchhhh
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAV---ARAAGIALEMLYVGKSNPKEKA 373 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i---~~~~~~~~E~v~Vgkd~~~e~v 373 (527)
.+||++.+||++. -.+|+++.+.+.+. .......+.++++.-+..++.-
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDES 55 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence 3799999999875 47889999988754 3333447899999888765443
No 166
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=61.79 E-value=13 Score=29.70 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=36.5
Q ss_pred EEEecCCCChhHH--HHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCHHH
Q 009735 172 LLVSDLDVSNEEL--FLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAV 249 (527)
Q Consensus 172 LyfSal~~~~~~~--~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~~~ 249 (527)
..|++.|||.|.- +.|.+.+ + ...|+++.|.. +++. ...
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i-------~~~~~~~~v~~--------~~~~----------------------~~~ 42 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--V-------KPAYEVVELDQ--------LSNG----------------------SEI 42 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--C-------CCCCEEEEeeC--------CCCh----------------------HHH
Confidence 5789999999983 3455443 2 13589998863 2111 123
Q ss_pred HHHHHHhhCCCCCcEEEE
Q 009735 250 IRYAKEKWDFRKKPILVV 267 (527)
Q Consensus 250 ~r~ike~~~~~~iP~LVv 267 (527)
.+++.+..++..+|.+.+
T Consensus 43 ~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 43 QDYLEEITGQRTVPNIFI 60 (84)
T ss_pred HHHHHHHhCCCCCCeEEE
Confidence 456667778888999854
No 167
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.61 E-value=15 Score=35.76 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=55.6
Q ss_pred ccCcEEEEEEecCCCChhHHHH-HHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCC
Q 009735 165 LRRKSVLLLVSDLDVSNEELFL-LEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPS 243 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~~~-L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~ 243 (527)
-+||+.+|.|+...|+-|+... -..-=.++|+ --.+.|-++.+-+ ++...-.|..- +
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrE---ylk~hf~~~~l~i-------~~skpv~f~~g------------~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLRE---YLKEHFSAYYLNI-------SYSKPVLFKVG------------D 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHH---HHhhCeEEEEEEe-------ccCcceEeecC------------c
Confidence 5689999999999999998553 1111122322 1235688888766 22222222210 0
Q ss_pred CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 244 AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 244 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+....-.+-|...|.+++-|++|..|..|+.+
T Consensus 98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred eeeeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 00112235777889999999999999999876
No 168
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=61.53 E-value=24 Score=29.24 Aligned_cols=43 Identities=7% Similarity=-0.130 Sum_probs=31.9
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.++.+.+||+++ -..|++|.+.+.++++.....+.+..+..+.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 566688888885 3666999999999987655567777776653
No 169
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=60.15 E-value=11 Score=36.30 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=42.6
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhHHH---HHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEELF---LLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~~~---~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
+.+|..++++.++||.|++.=-|+-| .+|+ -|+.+|++.+ +..|||+=.|.
T Consensus 12 ~~~G~~~~l~~~~GkVlLIVNtASkC--GfTpQYegLe~Ly~ky~------~~Gf~VLgFPc 65 (162)
T COG0386 12 DIDGEPVSLSDYKGKVLLIVNTASKC--GFTPQYEGLEALYKKYK------DKGFEVLGFPC 65 (162)
T ss_pred ccCCCCccHHHhCCcEEEEEEccccc--CCcHhHHHHHHHHHHHh------hCCcEEEeccc
Confidence 34667899999999999999999987 4555 4999999996 34699999997
No 170
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=59.74 E-value=23 Score=33.26 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=35.5
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhh
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARR 375 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~~ 375 (527)
..||.+.|||-++ -..|+++.+.+.++++. .++++.|+.+...+..++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~ 109 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALK 109 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHH
Confidence 3799999999884 25558889998888653 489999987655555444
No 171
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=58.49 E-value=15 Score=37.82 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=58.3
Q ss_pred eecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhh-HHHHHHhhcCCCc
Q 009735 160 VSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAK-EHKFEALQYMMPW 236 (527)
Q Consensus 160 V~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~-~~~F~~~~~~MPW 236 (527)
--|..|.+++=++||-..+|+-|. .++|..+=++- .++|+-||+ |.. -..|.+. .
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---------gi~v~~VS~--------DG~~~p~fp~~---~-- 200 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---------GISVIPISV--------DGTLIPGLPNS---R-- 200 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec--------CCCCCCCCCCc---c--
Confidence 357788889888999999998888 45566655543 499999997 322 1112211 0
Q ss_pred eeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHH
Q 009735 237 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALH 281 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~ 281 (527)
++ .-+.+.++++..|.|++++|+++...+=|.+
T Consensus 201 -----~d-------~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 201 -----SD-------SGQAQHLGVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred -----CC-------hHHHHhcCCccCceEEEEECCCCcEEEEeec
Confidence 11 2345677999999999999986655444433
No 172
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=58.49 E-value=17 Score=29.59 Aligned_cols=44 Identities=5% Similarity=-0.006 Sum_probs=33.6
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
.++.+.|||.+. -..|+++.+.+.++++..+..+.++.|..++.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 57 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC
Confidence 467889999884 35559999999999876666788888877644
No 173
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=58.37 E-value=5 Score=31.48 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=17.3
Q ss_pred CccceecCCC-CC---CCCceeecCCCCccc
Q 009735 490 HCNRLILPGE-AG---RIPEKVVCAECGRRM 516 (527)
Q Consensus 490 ~C~~~~~p~~-~g---~ip~~i~CpeC~R~M 516 (527)
.-|++.+|.. -. .=.+.+.||+|||.+
T Consensus 26 ~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 26 SGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 3456777632 11 116789999999975
No 174
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=58.09 E-value=7.2 Score=29.83 Aligned_cols=31 Identities=16% Similarity=0.529 Sum_probs=19.5
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCc-ccceeee
Q 009735 490 HCNR-LILPGEAGRIPEKVVCAECGR-RMEEFIM 521 (527)
Q Consensus 490 ~C~~-~~~p~~~g~ip~~i~CpeC~R-~ME~~v~ 521 (527)
.|.+ +++-...+. ...+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~s 42 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLLS 42 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEec
Confidence 3666 544322233 67789999998 6776544
No 175
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=56.89 E-value=16 Score=32.01 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=33.8
Q ss_pred cccCc-eEEEEEccCCh-hHHHHHHHHHH---HHHHHhCCceeEEEeccCCc
Q 009735 323 WIMEQ-KHICLYGGEDL-EWVRKFTALMG---AVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 323 ~i~eg-K~I~LYgg~d~-~Wi~~FT~~~~---~i~~~~~~~~E~v~Vgkd~~ 369 (527)
..++| |.|.++|++++ .||+++.+.+. ++++..+..+.++.|.-+..
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 60 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGD 60 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCC
Confidence 35689 99999999964 77899888663 45443344688888876643
No 176
>PHA02278 thioredoxin-like protein
Probab=55.88 E-value=18 Score=31.84 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=32.6
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd 367 (527)
+++++.+.+||.+++ ..|+.+.+.+.+++++.+....++.|--|
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd 55 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLD 55 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECC
Confidence 458999999999953 55599999999997653344556666555
No 177
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=55.73 E-value=25 Score=31.88 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=34.4
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
.++.+.++|++++ ..|+.+.+.+.+++++-...+..+.|--|+.
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~ 57 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV 57 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC
Confidence 5788999999942 4459999999999886555578888888754
No 178
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=53.80 E-value=98 Score=31.05 Aligned_cols=97 Identities=18% Similarity=0.267 Sum_probs=53.4
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEE--eccCCCC--------Ccchh-hHHHHHHhhcCC
Q 009735 166 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWL--PIVDRST--------PWTEA-KEHKFEALQYMM 234 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwI--piVd~s~--------~w~D~-~~~~F~~~~~~M 234 (527)
.||+++..||+.+||-|.-. +.++++.+ + .+.+|.++ |+..... -|-.. ..+.|+.....-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl-----~~~l~~~~-~--~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~ 177 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKL-----HEQMKDYN-A--LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGK 177 (232)
T ss_pred CCCEEEEEEECCCChHHHHH-----HHHHHHHh-c--CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 36888999999999999633 22232211 1 23666665 5421111 13322 235565544332
Q ss_pred CceeecCCC-CCCHHHHHHHHHhhCCCCCcEEEEeCCCCcee
Q 009735 235 PWFSVHHPS-AIDPAVIRYAKEKWDFRKKPILVVLDPQGRVV 275 (527)
Q Consensus 235 PWyAVpf~~-~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 275 (527)
+ ++-.. ..+.+....+.+.++++|.|++|+ ++|+++
T Consensus 178 ~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 178 D---VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred C---CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 1 11110 012344456669999999999995 468776
No 179
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=63 Score=34.37 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=80.7
Q ss_pred cCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCC
Q 009735 166 RRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAI 245 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i 245 (527)
.++.+++.|-+.||.+|.- |...|.++-. ...+ +|=+.-||
T Consensus 46 ~~~~~~v~fyapwc~~c~~--l~~~~~~~~~---~l~~---~~~~~~vd------------------------------- 86 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKK--LAPTYKKLAK---ALKG---KVKIGAVD------------------------------- 86 (383)
T ss_pred cCCceEEEEECCCCcchhh--hchHHHHHHH---HhcC---ceEEEEeC-------------------------------
Confidence 3577889999999999872 3444444421 1122 45555444
Q ss_pred CHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccCChhhHHHhhhhccc--ceeeccccCCCCcccc
Q 009735 246 DPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVAREEALWKEETW--RIDLLADSVDPVIPTW 323 (527)
Q Consensus 246 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~~e~w--~lelL~d~id~~I~~~ 323 (527)
....+.+.+.+++.+-|+++++.|..+.+...+. .-...++.|-....+..-..-.- ..+++.+..+..+.+
T Consensus 87 -~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~- 160 (383)
T KOG0191|consen 87 -CDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGP----RNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKD- 160 (383)
T ss_pred -chhhHHHHHhcCCccCcEEEEEcCCCceeeccCc----ccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhc-
Confidence 2345677888899999999999988555543330 00011122211111111111000 112333333333322
Q ss_pred ccCceEEEEEccCChhHH---HHHHHHHHHHHHHh--CCceeEEEeccC
Q 009735 324 IMEQKHICLYGGEDLEWV---RKFTALMGAVARAA--GIALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d~~Wi---~~FT~~~~~i~~~~--~~~~E~v~Vgkd 367 (527)
.++.+.|-+| + .|| +.+.+.+.++++.. +..+++.-+..+
T Consensus 161 ~~~~~lv~f~--a--Pwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 161 SDADWLVEFY--A--PWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred cCcceEEEEe--c--cccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 2345566665 3 565 77777777777643 466666666554
No 180
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=53.07 E-value=30 Score=30.39 Aligned_cols=46 Identities=9% Similarity=-0.116 Sum_probs=33.3
Q ss_pred CccccccCceEEEEEccCC-hhHHHHHHHHHHHHHHHh-CCceeEEEecc
Q 009735 319 VIPTWIMEQKHICLYGGED-LEWVRKFTALMGAVARAA-GIALEMLYVGK 366 (527)
Q Consensus 319 ~I~~~i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~-~~~~E~v~Vgk 366 (527)
.+++. .||.+.|||-+. -..|+.-.+.+.+++++. +..++++.|+.
T Consensus 17 ~l~~~--~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 17 SLAQL--RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CHHHh--CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 33444 789999999762 233478888898987764 46799999975
No 181
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=51.73 E-value=21 Score=31.53 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=31.5
Q ss_pred CceEEEEEccCC-hhH-HHHHHHHHHHHHHHhC----CceeEEEeccCCc
Q 009735 326 EQKHICLYGGED-LEW-VRKFTALMGAVARAAG----IALEMLYVGKSNP 369 (527)
Q Consensus 326 egK~I~LYgg~d-~~W-i~~FT~~~~~i~~~~~----~~~E~v~Vgkd~~ 369 (527)
.||.+.|+|... -.. |+.-.+.+.+++++.+ ..++++.|+.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 789999998663 243 5667777777766433 3599999998753
No 182
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=50.68 E-value=34 Score=28.77 Aligned_cols=43 Identities=9% Similarity=-0.118 Sum_probs=32.3
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.++.+.++|.+++ .-|+.+.+.+.++++..+..+.+..|.-+.
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~ 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 5779999998842 555999999999988655556677776653
No 183
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=50.33 E-value=24 Score=28.89 Aligned_cols=44 Identities=7% Similarity=0.041 Sum_probs=29.9
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCC--ceeEEEeccC
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARAAGI--ALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~--~~E~v~Vgkd 367 (527)
++.|+.++|+|.+. -.-||+|.+.+.++++.... .+-++.+.-+
T Consensus 10 ~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 10 VLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred hccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 55899999999883 23349999999888765322 3555555444
No 184
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=50.04 E-value=27 Score=29.37 Aligned_cols=43 Identities=5% Similarity=-0.095 Sum_probs=33.1
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.|+.+.++|.++ -..|+++.+.+.++++..+..+.++.|.-++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 678899999884 2555999999999987666667777776664
No 185
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=49.79 E-value=23 Score=31.54 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=29.5
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHH--hCCceeEEEecc
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARA--AGIALEMLYVGK 366 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~--~~~~~E~v~Vgk 366 (527)
..+||-|+++|++++ .||+.+.+.+.+.+.. .+..|-++-|..
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~ 61 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLED 61 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecC
Confidence 348999999999974 8889999888776542 233444444433
No 186
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=49.73 E-value=41 Score=32.02 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=36.9
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
.||.+.|+|-+. -..|++..+.+.++++ ..++++.|+-++..+.+++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~~~~ 116 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISWL 116 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHHHHH
Confidence 799999999884 2556899999988854 258899999766566665544
No 187
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.36 E-value=9.2 Score=30.92 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=19.5
Q ss_pred cCCCCCcc--ceecCCCCCCCCceeecCCCCcc
Q 009735 485 NRTPYHCN--RLILPGEAGRIPEKVVCAECGRR 515 (527)
Q Consensus 485 ~~~~~~C~--~~~~p~~~g~ip~~i~CpeC~R~ 515 (527)
.+.||+|. |..+--.-.+| +|.|.+|||+
T Consensus 13 MKK~H~Cg~NrwkIiRvGaDI--kikC~nC~h~ 43 (60)
T COG4481 13 MKKPHACGTNRWKIIRVGADI--KIKCENCGHS 43 (60)
T ss_pred ecCCCccccceEEEEEecCcE--EEEecCCCcE
Confidence 34588884 55554333344 7999999986
No 188
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=49.34 E-value=39 Score=29.71 Aligned_cols=45 Identities=4% Similarity=0.140 Sum_probs=32.5
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
+..++.+.+|+++++ ..|+.+-+.+.+++... ..++++.|..|..
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~ 64 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDED 64 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcC
Confidence 356788999999843 55698999999997654 4567777766643
No 189
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=49.33 E-value=34 Score=35.12 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=58.3
Q ss_pred ecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCcee
Q 009735 161 SIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFS 238 (527)
Q Consensus 161 ~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyA 238 (527)
-|..|.+++=++||-..+|+-|. .++|..+=++- .++|+-||+ |.. ..| .
T Consensus 137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---------g~~v~~VS~--------DG~---------~~p--~ 188 (248)
T PRK13703 137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---------GLSVIPVSV--------DGV---------INP--L 188 (248)
T ss_pred HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---------CCeEEEEec--------CCC---------CCC--C
Confidence 47788888888999999998888 45677666554 499999997 322 111 1
Q ss_pred ecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHH
Q 009735 239 VHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALH 281 (527)
Q Consensus 239 Vpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~ 281 (527)
+|-+- .|.. ..+.++++..|.|++++|+++..-+=|.+
T Consensus 189 fp~~~-~d~g----qa~~l~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 189 LPDSR-TDQG----QAQRLGVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred CCCCc-cChh----HHHhcCCcccceEEEEECCCCcEEEEeec
Confidence 11110 1122 22678999999999999987555444433
No 190
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=48.68 E-value=8.1 Score=29.57 Aligned_cols=14 Identities=29% Similarity=0.821 Sum_probs=11.9
Q ss_pred ceeecCCCCcccce
Q 009735 505 EKVVCAECGRRMEE 518 (527)
Q Consensus 505 ~~i~CpeC~R~ME~ 518 (527)
..+.|++||++|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 57899999999954
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=48.27 E-value=48 Score=26.11 Aligned_cols=46 Identities=26% Similarity=0.185 Sum_probs=33.4
Q ss_pred eecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 160 VSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 160 V~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
.....++++.+++.|-+.||++|. .+.|.++.++.. . ..+++.|-.
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----~--~~~~~~i~~ 72 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG-----G--DVEVVAVNV 72 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc-----C--CcEEEEEEC
Confidence 344445588888876799999999 457888888874 1 577777764
No 192
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=48.10 E-value=62 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=30.1
Q ss_pred ceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 009735 327 QKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 327 gK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd 367 (527)
+|.+.++|.++ -.+|+++.+.+.++++.....+-++.|.-+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 68999999885 366799999999997754455666666443
No 193
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=47.66 E-value=28 Score=29.79 Aligned_cols=42 Identities=14% Similarity=0.041 Sum_probs=31.9
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.||.+.|+|.+++ .-|+.+.+.+.+++++. ..+.++.|..|.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~ 56 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDE 56 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCC
Confidence 4899999999942 34499999999998765 456667776653
No 194
>PRK09381 trxA thioredoxin; Provisional
Probab=46.55 E-value=39 Score=28.68 Aligned_cols=45 Identities=7% Similarity=-0.043 Sum_probs=33.8
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
..++.+.++|-+. -.-|+.+.+.+.++++..+..+.+..|.-+..
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~ 64 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 64 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC
Confidence 3578888988883 23469999999999887655688888877643
No 195
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=46.46 E-value=42 Score=25.55 Aligned_cols=13 Identities=0% Similarity=-0.299 Sum_probs=11.1
Q ss_pred EEEecCCCChhHH
Q 009735 172 LLVSDLDVSNEEL 184 (527)
Q Consensus 172 LyfSal~~~~~~~ 184 (527)
.+|++.||++|.-
T Consensus 3 ~lf~~~~C~~C~~ 15 (74)
T TIGR02196 3 KVYTTPWCPPCKK 15 (74)
T ss_pred EEEcCCCChhHHH
Confidence 5799999999983
No 196
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=46.35 E-value=49 Score=27.23 Aligned_cols=43 Identities=7% Similarity=0.053 Sum_probs=32.8
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHh-C-CceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAA-G-IALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~-~-~~~E~v~Vgkd~ 368 (527)
.|+.+.|+|.++ ..+|+.|.+.+.++++.. + ..+.+..|.-+.
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 578898988875 477799999999998753 2 467777777663
No 197
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=46.28 E-value=31 Score=29.23 Aligned_cols=51 Identities=8% Similarity=0.050 Sum_probs=33.5
Q ss_pred CCCCccccccCceEEEEEccCC-hhHHHHHHHHHHHHHHHh---CCceeEEEeccC
Q 009735 316 VDPVIPTWIMEQKHICLYGGED-LEWVRKFTALMGAVARAA---GIALEMLYVGKS 367 (527)
Q Consensus 316 id~~I~~~i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~---~~~~E~v~Vgkd 367 (527)
.+....+ +.+++.+.|+|.+. -.-|+++.+.+.++++.. +..+.+..+.-+
T Consensus 5 ~~~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 5 LDDSFKD-VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred chhhhhh-hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 3333433 45677899999983 244599999999987753 345666666544
No 198
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=45.99 E-value=1.5e+02 Score=23.42 Aligned_cols=86 Identities=16% Similarity=-0.027 Sum_probs=43.8
Q ss_pred EEEecCCCChhHHH--HHHHHHHHHhhhccCCCCCeEEEEEeccCCCCC--cchhhHHHHHHhhcCCCceeecCCCCCCH
Q 009735 172 LLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPIVDRSTP--WTEAKEHKFEALQYMMPWFSVHHPSAIDP 247 (527)
Q Consensus 172 LyfSal~~~~~~~~--~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~--w~D~~~~~F~~~~~~MPWyAVpf~~~i~~ 247 (527)
.+|++..||.|... .|.++- + ....+.+++|.|+.-.... .+............. -..-.+-+.
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--- 69 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLL---Y----ADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQ--GKFEALHEA--- 69 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHH---h----hcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHc--CcHHHHHHH---
Confidence 47888889888843 344443 1 2456799999987432111 111111111111110 001111000
Q ss_pred HHHHHHHHhhCCCCCcEEEEeC
Q 009735 248 AVIRYAKEKWDFRKKPILVVLD 269 (527)
Q Consensus 248 ~~~r~ike~~~~~~iP~LVvL~ 269 (527)
-.-..+-+.+++.|.|++|+-|
T Consensus 70 l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 70 LADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHcCCCCCCEEEECC
Confidence 0123444788999999999987
No 199
>PHA03050 glutaredoxin; Provisional
Probab=45.94 E-value=32 Score=30.62 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=22.3
Q ss_pred EEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEe
Q 009735 171 LLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLP 211 (527)
Q Consensus 171 lLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIp 211 (527)
...||..|||.|.. ..++-++++ -....||++-|.
T Consensus 15 V~vys~~~CPyC~~--ak~~L~~~~----i~~~~~~~i~i~ 49 (108)
T PHA03050 15 VTIFVKFTCPFCRN--ALDILNKFS----FKRGAYEIVDIK 49 (108)
T ss_pred EEEEECCCChHHHH--HHHHHHHcC----CCcCCcEEEECC
Confidence 55789999999963 333334443 123469988884
No 200
>PTZ00051 thioredoxin; Provisional
Probab=45.73 E-value=39 Score=27.87 Aligned_cols=31 Identities=0% Similarity=0.028 Sum_probs=24.7
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHH
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARA 354 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~ 354 (527)
+++++.+.|+|+++ -..||+|.+.+.++++.
T Consensus 15 ~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~ 46 (98)
T PTZ00051 15 LSQNELVIVDFYAEWCGPCKRIAPFYEECSKE 46 (98)
T ss_pred HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 45789999999985 25559999999998775
No 201
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=45.32 E-value=68 Score=25.43 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred EEEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhh
Q 009735 329 HICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKA 373 (527)
Q Consensus 329 ~I~LYgg~d~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v 373 (527)
.|-+|.+.+-..|++..+.+.+++++.+..++++.|.-+...+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~ 46 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA 46 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH
Confidence 356787777788899999999998766667888888877555443
No 202
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=45.10 E-value=30 Score=29.79 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCc-hhhhhhhh
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNP-KEKARRII 377 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~-~e~v~~~~ 377 (527)
..||.+.|+|.+. -..|+.+.+.+.+++++ ++++.|+-++. .+.++...
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~ 68 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFM 68 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHH
Confidence 3789999999874 34558888888888764 56666665532 44444433
No 203
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=44.76 E-value=34 Score=28.26 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=30.5
Q ss_pred ccCceEEEEEccCC-hhHHHHHHHHHHHHHHHhC---CceeEEEeccCC
Q 009735 324 IMEQKHICLYGGED-LEWVRKFTALMGAVARAAG---IALEMLYVGKSN 368 (527)
Q Consensus 324 i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~---~~~E~v~Vgkd~ 368 (527)
+..|+ +.|+|.++ -.-|+++.+.+.++++..+ ..+.++.|.-++
T Consensus 14 ~~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~ 61 (102)
T cd03005 14 IAEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ 61 (102)
T ss_pred hhcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC
Confidence 44565 88888883 2335999999999977643 367777776553
No 204
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=44.13 E-value=10 Score=25.42 Aligned_cols=13 Identities=46% Similarity=1.030 Sum_probs=10.5
Q ss_pred ceeecCCCCcccc
Q 009735 505 EKVVCAECGRRME 517 (527)
Q Consensus 505 ~~i~CpeC~R~ME 517 (527)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 3678999999764
No 205
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=43.47 E-value=42 Score=28.57 Aligned_cols=47 Identities=6% Similarity=-0.044 Sum_probs=32.9
Q ss_pred cccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhC------CceeEEEeccCCc
Q 009735 323 WIMEQKHICLYGGEDL-EWVRKFTALMGAVARAAG------IALEMLYVGKSNP 369 (527)
Q Consensus 323 ~i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~------~~~E~v~Vgkd~~ 369 (527)
-+++++.++++|.+.+ ..|+++.+.+.++++... ..+.+..|.-|+.
T Consensus 14 ~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 14 ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 3568899999999942 445999998888865421 2477777766643
No 206
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=43.41 E-value=41 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=29.8
Q ss_pred CceEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeEEEeccC
Q 009735 326 EQKHICLYGGEDLEW---VRKFTALMGAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 326 egK~I~LYgg~d~~W---i~~FT~~~~~i~~~~~~~~E~v~Vgkd 367 (527)
.||.+.++|.+ .| |+.+.+.+.++++..+ .+..+.|..+
T Consensus 17 ~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYA--SWCPFSASFRPHFNALSSMFP-QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc-cCceEEEECC
Confidence 89999999999 56 5999999999987643 3555555443
No 207
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=42.59 E-value=22 Score=28.40 Aligned_cols=28 Identities=32% Similarity=0.649 Sum_probs=21.0
Q ss_pred Cccc-eecCCCCCCCCceeecCCCCccccee
Q 009735 490 HCNR-LILPGEAGRIPEKVVCAECGRRMEEF 519 (527)
Q Consensus 490 ~C~~-~~~p~~~g~ip~~i~CpeC~R~ME~~ 519 (527)
.|.. +.+|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 3666 77775432 7789999999998874
No 208
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=42.16 E-value=1.6e+02 Score=22.81 Aligned_cols=13 Identities=0% Similarity=-0.312 Sum_probs=10.6
Q ss_pred EEEecCCCChhHH
Q 009735 172 LLVSDLDVSNEEL 184 (527)
Q Consensus 172 LyfSal~~~~~~~ 184 (527)
.+|++.||++|..
T Consensus 3 ~ly~~~~C~~C~~ 15 (77)
T TIGR02200 3 TVYGTTWCGYCAQ 15 (77)
T ss_pred EEEECCCChhHHH
Confidence 4688899999984
No 209
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=41.89 E-value=46 Score=28.97 Aligned_cols=43 Identities=9% Similarity=-0.014 Sum_probs=31.9
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHh-CCceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAA-GIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~-~~~~E~v~Vgkd~ 368 (527)
.||.+.++|-++ -.-|+.+.+.+.++++.. +..+.+..|.-++
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~ 67 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH 67 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc
Confidence 789999999993 133488899988887754 3457778887664
No 210
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=41.37 E-value=52 Score=31.84 Aligned_cols=102 Identities=19% Similarity=0.281 Sum_probs=45.6
Q ss_pred cCcEEEEEEecCCCChhHH-----H---HHHHHHHHHhhhccCCCCCeEEEEEecc-CCCCCcchhhHHHHHHhhcCCCc
Q 009735 166 RRKSVLLLVSDLDVSNEEL-----F---LLEQMYRESRQLSSRTESQYEVVWLPIV-DRSTPWTEAKEHKFEALQYMMPW 236 (527)
Q Consensus 166 ~gK~VlLyfSal~~~~~~~-----~---~L~~iY~~lk~~~~~~~~~fEIVwIpiV-d~s~~w~D~~~~~F~~~~~~MPW 236 (527)
++|-|+|.|...||.-|.. + .+.++.|+- ||||- |+ |+ +...+.
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~--------------FI~VkvDr-----ee-~Pdid~------- 88 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN--------------FIPVKVDR-----EE-RPDIDK------- 88 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH---------------EEEEEET-----TT--HHHHH-------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC--------------EEEEEecc-----cc-CccHHH-------
Confidence 5899999999999987762 2 244444443 67762 31 11 122222
Q ss_pred eeecCCCCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccH-HHHHHHhCCccccCChhhHHHhhhhc
Q 009735 237 FSVHHPSAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNA-LHMMWIWGSVAFPFSVAREEALWKEE 305 (527)
Q Consensus 237 yAVpf~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA-~~mI~~wG~~AfPFT~~r~e~L~~~e 305 (527)
....+..-..+..|=|+-|+|+|+|+.+..-. ..-=..+|..+|.=.-.++.++|+..
T Consensus 89 -----------~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~ 147 (163)
T PF03190_consen 89 -----------IYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKEN 147 (163)
T ss_dssp -----------HHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHS
T ss_pred -----------HHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHC
Confidence 11122223336779999999999999875311 10012234444444444555555543
No 211
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=41.30 E-value=56 Score=29.20 Aligned_cols=45 Identities=4% Similarity=-0.173 Sum_probs=33.8
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
+++++.+.+.|-+.+ .-|+.+.+.+.++++..+..+.+.-|--+.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~ 71 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW 71 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 358899999999932 334999999999988655567777776553
No 212
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.03 E-value=13 Score=30.95 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=13.5
Q ss_pred CCceeecCCCCcccce
Q 009735 503 IPEKVVCAECGRRMEE 518 (527)
Q Consensus 503 ip~~i~CpeC~R~ME~ 518 (527)
..-++.||.||++.+-
T Consensus 4 ~~~~v~CP~Cgkpv~w 19 (65)
T COG3024 4 LRITVPCPTCGKPVVW 19 (65)
T ss_pred ccccccCCCCCCcccc
Confidence 3568999999999887
No 213
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=39.94 E-value=32 Score=35.41 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=33.3
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
.||++.++|-+. -.-|+++.+.+.++++..+ ++++.|+.|.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 689999999883 2344999999999987654 8899999884
No 214
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=39.80 E-value=52 Score=30.60 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=27.0
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHH---HHHHHHhCCceeEEEe
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALM---GAVARAAGIALEMLYV 364 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~---~~i~~~~~~~~E~v~V 364 (527)
-++||.|+||+++|+ .||+.+.... .+|++.++..|=+|.+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l 64 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNL 64 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEE
Confidence 459999999999963 6667766643 4455544556644444
No 215
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=39.66 E-value=48 Score=31.77 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=33.4
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCCchhhhhh
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSNPKEKARR 375 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~v~~ 375 (527)
..||.+.|||.+. -..|++..+.+.+++++. .+.++.|+.+++ +..++
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~~-~~~~~ 120 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDGTP-AEHRR 120 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCCCH-HHHHH
Confidence 3789999999873 245588888888887643 467888886644 34333
No 216
>PRK02935 hypothetical protein; Provisional
Probab=38.29 E-value=17 Score=32.94 Aligned_cols=21 Identities=19% Similarity=0.623 Sum_probs=15.7
Q ss_pred eeecCCCCccccee-eeeeccC
Q 009735 506 KVVCAECGRRMEEF-IMYRCCT 526 (527)
Q Consensus 506 ~i~CpeC~R~ME~~-v~YkCCh 526 (527)
.|.||+|+++...- -.+.|-|
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~ 91 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMH 91 (110)
T ss_pred eeECCCCCchhhhccceeecCc
Confidence 46899999988776 5666654
No 217
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.08 E-value=22 Score=30.04 Aligned_cols=25 Identities=24% Similarity=0.731 Sum_probs=16.6
Q ss_pred CCCceeecCCCCccccee-----eeeeccC
Q 009735 502 RIPEKVVCAECGRRMEEF-----IMYRCCT 526 (527)
Q Consensus 502 ~ip~~i~CpeC~R~ME~~-----v~YkCCh 526 (527)
+......||+|+.++|+- +.|-|=|
T Consensus 26 ~~~~~a~CPdC~~~Le~LkACGAvdYFC~~ 55 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVLKACGAVDYFCNH 55 (70)
T ss_dssp EEEEEEE-TTT-SB-EEEEETTEEEEE-TT
T ss_pred cceecccCCCcccHHHHHHHhcccceeecc
Confidence 466778999999999996 7888744
No 218
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=36.47 E-value=91 Score=25.58 Aligned_cols=43 Identities=7% Similarity=-0.004 Sum_probs=32.2
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhC--CceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAG--IALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~--~~~E~v~Vgkd~ 368 (527)
.+|.+++++.++ -..|++|.+.+.++++..+ ..+.++.+.-++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 567888888885 3556999999999987643 467777777664
No 219
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.46 E-value=56 Score=27.56 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=36.6
Q ss_pred CChhhHHHhhhhcccceeeccccCCCCc---ccccc--CceEEEEEccCChhHHHHHHHHHHHHHHHhCCceeEE
Q 009735 293 FSVAREEALWKEETWRIDLLADSVDPVI---PTWIM--EQKHICLYGGEDLEWVRKFTALMGAVARAAGIALEML 362 (527)
Q Consensus 293 FT~~r~e~L~~~e~w~lelL~d~id~~I---~~~i~--egK~I~LYgg~d~~Wi~~FT~~~~~i~~~~~~~~E~v 362 (527)
+|.+...+..+...- .+. .. +.| .+|+. .||..|||-+.|.+ ++++.++.+|.+..-+
T Consensus 12 it~e~l~~~~~~~~~---~~~-~~-~~V~w~~s~v~~d~~k~~Cly~Ap~~e-------aV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 12 ITAEDLAAAHAKSCA---VQA-EM-PGVQWLRSYVSEDDGKIFCLYEAPDEE-------AVREHARRAGLPADRI 74 (77)
T ss_pred CCHHHHHHHHHHhHH---HHh-hc-CCeEEEEEEEecCCCeEEEEEECCCHH-------HHHHHHHHcCCCcceE
Confidence 566666555554322 121 12 344 36677 99999999999866 6677777777776543
No 220
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=35.86 E-value=89 Score=24.89 Aligned_cols=32 Identities=16% Similarity=0.035 Sum_probs=21.0
Q ss_pred EEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 172 LLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 172 LyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
.+||+.|||.|... .++.+++ +.+|+++.|..
T Consensus 3 ~~y~~~~Cp~C~~~--~~~l~~~-------~~~~~~~~v~~ 34 (82)
T cd03419 3 VVFSKSYCPYCKRA--KSLLKEL-------GVKPAVVELDQ 34 (82)
T ss_pred EEEEcCCCHHHHHH--HHHHHHc-------CCCcEEEEEeC
Confidence 67899999999732 2223333 23688888864
No 221
>PF14369 zf-RING_3: zinc-finger
Probab=35.30 E-value=28 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=14.2
Q ss_pred CCccceecCCCCCCCCceeecCCCCc
Q 009735 489 YHCNRLILPGEAGRIPEKVVCAECGR 514 (527)
Q Consensus 489 ~~C~~~~~p~~~g~ip~~i~CpeC~R 514 (527)
|.|++.+-+...+ .+.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~--~~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSP--DSDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCC--CCCcCCcCCCC
Confidence 6799865543221 12247999973
No 222
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=35.21 E-value=31 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.690 Sum_probs=20.4
Q ss_pred CCCCceeecCCCCcccceeeeee
Q 009735 501 GRIPEKVVCAECGRRMEEFIMYR 523 (527)
Q Consensus 501 g~ip~~i~CpeC~R~ME~~v~Yk 523 (527)
|+-|..+.||.|+...+..|.|+
T Consensus 2 ~~~p~~~~CP~C~~~~~T~v~~~ 24 (73)
T PF10601_consen 2 GPEPVRIYCPYCQQQVQTRVEYK 24 (73)
T ss_pred CCCceeeECCCCCCEEEEEEEEE
Confidence 67899999999999999888775
No 223
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=33.84 E-value=68 Score=28.26 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=33.8
Q ss_pred ccCceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 324 IMEQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 324 i~egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
|.+++.+.+||.+++ ..|+...+.+.+++++. ..+-++.|.-++.
T Consensus 19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-~~i~f~~Vd~~~~ 64 (113)
T cd02989 19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-LETKFIKVNAEKA 64 (113)
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-CCCEEEEEEcccC
Confidence 557788999998853 56799999999998753 2367788877743
No 224
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=33.71 E-value=26 Score=39.55 Aligned_cols=26 Identities=38% Similarity=0.903 Sum_probs=20.7
Q ss_pred CCCCCceeecCCCCcccce--------eeeeec-c
Q 009735 500 AGRIPEKVVCAECGRRMEE--------FIMYRC-C 525 (527)
Q Consensus 500 ~g~ip~~i~CpeC~R~ME~--------~v~YkC-C 525 (527)
.+-.|=...||+|||.... .|.|+| |
T Consensus 162 ~~~~P~~pic~~cGrv~~~~~~~~~~~~v~Y~c~c 196 (515)
T TIGR00467 162 ENWYPISVFCENCGRDTTTVNNYDNEYSIEYSCEC 196 (515)
T ss_pred CCceeeeeecCCcCccCceEEEecCCceEEEEcCC
Confidence 6678889999999998732 377888 6
No 225
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=33.53 E-value=18 Score=24.39 Aligned_cols=13 Identities=23% Similarity=0.979 Sum_probs=7.4
Q ss_pred eeecCCCCcccce
Q 009735 506 KVVCAECGRRMEE 518 (527)
Q Consensus 506 ~i~CpeC~R~ME~ 518 (527)
++.||+||...+.
T Consensus 2 ~~~Cp~Cg~~~~~ 14 (26)
T PF13248_consen 2 EMFCPNCGAEIDP 14 (26)
T ss_pred cCCCcccCCcCCc
Confidence 3566777665443
No 226
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.32 E-value=1.2e+02 Score=26.38 Aligned_cols=74 Identities=20% Similarity=0.221 Sum_probs=47.8
Q ss_pred EEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCHHHH
Q 009735 171 LLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVI 250 (527)
Q Consensus 171 lLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~~~~ 250 (527)
-||+|.+ ||.|- +. -+.|. +.+-+||-|=|- -+-..-++|-.++.+|| .| | +.
T Consensus 5 ~lfgsn~-Cpdca-~a----~eyl~----rl~v~yd~VeIt-------~Sm~NlKrFl~lRDs~~----~F-d--~v--- 57 (85)
T COG4545 5 KLFGSNL-CPDCA-PA----VEYLE----RLNVDYDFVEIT-------ESMANLKRFLHLRDSRP----EF-D--EV--- 57 (85)
T ss_pred eeecccc-CcchH-HH----HHHHH----HcCCCceeeehh-------hhhhhHHHHHhhhccch----hH-H--hh---
Confidence 4666666 55543 32 23443 456789977763 24678899999999998 33 2 11
Q ss_pred HHHHHhhCCCCCcEEEEeCCCCceecc
Q 009735 251 RYAKEKWDFRKKPILVVLDPQGRVVNQ 277 (527)
Q Consensus 251 r~ike~~~~~~iP~LVvL~pqGkv~~~ 277 (527)
+.+++-|||.|.+ ++|+++--
T Consensus 58 ----k~~gyiGIPall~--~d~~vVl~ 78 (85)
T COG4545 58 ----KSNGYIGIPALLT--DDGKVVLG 78 (85)
T ss_pred ----hhcCcccceEEEe--CCCcEEEe
Confidence 2347789999754 78888754
No 227
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=33.30 E-value=94 Score=25.58 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=21.2
Q ss_pred EEEEecCCCChhHHH--HHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 171 LLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 171 lLyfSal~~~~~~~~--~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
...||..+||.|..- .|.++..+. .++++.+|.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--------~~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--------DDFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--------cCCcEEEEEC
Confidence 357899999999833 465554432 2455556655
No 228
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.69 E-value=18 Score=33.16 Aligned_cols=22 Identities=23% Similarity=0.649 Sum_probs=14.0
Q ss_pred ceeecCCCCccccee-eeeeccC
Q 009735 505 EKVVCAECGRRMEEF-IMYRCCT 526 (527)
Q Consensus 505 ~~i~CpeC~R~ME~~-v~YkCCh 526 (527)
-.|.||+|+|+-... =...|-|
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~ 90 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMH 90 (114)
T ss_pred eeeECCCCCChHhhhchhhccCc
Confidence 356788888876555 3345544
No 229
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=32.41 E-value=41 Score=30.36 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=24.1
Q ss_pred HHHHhhhhcCCCCCccc--eecCCCCCCCCceeecCCCCccccee-eeeec
Q 009735 477 AMNDYLNENRTPYHCNR--LILPGEAGRIPEKVVCAECGRRMEEF-IMYRC 524 (527)
Q Consensus 477 Af~~y~~~~~~~~~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-v~YkC 524 (527)
||+-+|+-+...-.|.. +++- .+|.+..|+.||+..+.- ..+.|
T Consensus 43 ~L~faf~~~~~~t~~ega~L~I~----~~p~~~~C~~Cg~~~~~~~~~~~C 89 (115)
T TIGR00100 43 QLQFAFEVVREGTVAEGAKLNIE----DEPVECECEDCSEEVSPEIDLYRC 89 (115)
T ss_pred HHHHHHHHHhCCCccCCCEEEEE----eeCcEEEcccCCCEEecCCcCccC
Confidence 44455554433334433 4443 477778888888766664 34445
No 230
>PRK07218 replication factor A; Provisional
Probab=32.18 E-value=18 Score=39.79 Aligned_cols=11 Identities=9% Similarity=-0.179 Sum_probs=6.3
Q ss_pred hHHHhhhhccc
Q 009735 297 REEALWKEETW 307 (527)
Q Consensus 297 r~e~L~~~e~w 307 (527)
++.+|.....|
T Consensus 164 kI~DL~~g~~~ 174 (423)
T PRK07218 164 KLIDLGPGDRG 174 (423)
T ss_pred chhhccCCCCc
Confidence 45566655555
No 231
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=32.00 E-value=1.7e+02 Score=31.02 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=55.6
Q ss_pred ccCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcc-hhhHHHHHHhhcCCCceeec-CC
Q 009735 165 LRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWT-EAKEHKFEALQYMMPWFSVH-HP 242 (527)
Q Consensus 165 L~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~-D~~~~~F~~~~~~MPWyAVp-f~ 242 (527)
+-+....|+=...+........+.++++.|+......+..|||+-+|.-+...... +.--.++-++.-.--=.-|| |.
T Consensus 207 Fv~~~~vl~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lp~p~~~~~~~~~~~~~sY~Nfli~n~~VivP~fg 286 (329)
T PF04371_consen 207 FVDPGTVLVSRCDDPSDPNYERLEENLEILSAATDADGRPFEIVELPLPDPPYDEDGERLPASYVNFLITNGAVIVPVFG 286 (329)
T ss_dssp EEETTEEEEEE-S-TTSTTHHHHHHHHHHHHT-B-TTSSB-EEEEEEB-SS-BETTTEEE--BTT--EEETTEEEEEE-S
T ss_pred ecCCCEEEEEecCCCCCcCHHHHHHHHHHHHhhhccCCCeeEEEEecCCCcccccCCcCccceeeeeEEECCEEEEccCC
Confidence 33444444444333323345679999999986555678899999999843111000 01111221111100011122 33
Q ss_pred CCCCHHHHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhC
Q 009735 243 SAIDPAVIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWG 287 (527)
Q Consensus 243 ~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG 287 (527)
+.-|.++.+.|++.| |+-+|+--|+..+++.-|
T Consensus 287 ~~~D~~Al~~l~~~f------------P~r~Vv~i~~~~l~~~GG 319 (329)
T PF04371_consen 287 DPADEAALEILQEAF------------PDRKVVGIDARELIEGGG 319 (329)
T ss_dssp STTHHHHHHHHHHHS------------TTSEEEEEETHHHHTTT-
T ss_pred ChHHHHHHHHHHHHC------------CCCEEEEEeHHHHHhCCC
Confidence 334778889999888 566677777777666444
No 232
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=31.73 E-value=74 Score=26.21 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=26.2
Q ss_pred cccccCceEEEEEccCC-hhHHHHHHHHHHHHHHHh
Q 009735 321 PTWIMEQKHICLYGGED-LEWVRKFTALMGAVARAA 355 (527)
Q Consensus 321 ~~~i~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~ 355 (527)
.+.++.++.++++|.++ -..|+++.+.+.++++..
T Consensus 11 ~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~ 46 (104)
T cd02997 11 RKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATEL 46 (104)
T ss_pred HHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHH
Confidence 34466888999999885 366699998888887643
No 233
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.35 E-value=23 Score=32.72 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=12.0
Q ss_pred CCCceeecCCCCccc
Q 009735 502 RIPEKVVCAECGRRM 516 (527)
Q Consensus 502 ~ip~~i~CpeC~R~M 516 (527)
-+-....||||||.-
T Consensus 94 v~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 94 VIEGELVCPETGRVF 108 (124)
T ss_pred hccceEecCCCCcEe
Confidence 366789999999964
No 234
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=31.33 E-value=82 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=33.4
Q ss_pred ccccCceEEEEEccCChhH---HHHHHHHHHHHHHHhCCceeEEEeccCCc
Q 009735 322 TWIMEQKHICLYGGEDLEW---VRKFTALMGAVARAAGIALEMLYVGKSNP 369 (527)
Q Consensus 322 ~~i~egK~I~LYgg~d~~W---i~~FT~~~~~i~~~~~~~~E~v~Vgkd~~ 369 (527)
+++..|....+.|++++.| |+.+.+.+.++++..+..+.++.|.-|..
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~ 72 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE 72 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC
Confidence 5556654455555664333 59999999999987667788888877744
No 235
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=31.02 E-value=21 Score=26.42 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.7
Q ss_pred eecCCCCcccce
Q 009735 507 VVCAECGRRMEE 518 (527)
Q Consensus 507 i~CpeC~R~ME~ 518 (527)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 579999988854
No 236
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=30.90 E-value=37 Score=25.57 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=10.1
Q ss_pred eeecCCCCcccc
Q 009735 506 KVVCAECGRRME 517 (527)
Q Consensus 506 ~i~CpeC~R~ME 517 (527)
.+.||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 689999998765
No 237
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=30.57 E-value=21 Score=28.67 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=7.2
Q ss_pred ceeecCCCCcccce
Q 009735 505 EKVVCAECGRRMEE 518 (527)
Q Consensus 505 ~~i~CpeC~R~ME~ 518 (527)
..-+||+|++++..
T Consensus 23 ~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 23 QPATCPICGAVIRQ 36 (54)
T ss_dssp --EE-TTT--EESS
T ss_pred CCCCCCcchhhccc
Confidence 44689999998764
No 238
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.35 E-value=79 Score=29.59 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=27.2
Q ss_pred ccCceEEEEEccCC------hhHHHHHHHHHHHHHH---H--hCCceeEEEeccC
Q 009735 324 IMEQKHICLYGGED------LEWVRKFTALMGAVAR---A--AGIALEMLYVGKS 367 (527)
Q Consensus 324 i~egK~I~LYgg~d------~~Wi~~FT~~~~~i~~---~--~~~~~E~v~Vgkd 367 (527)
+..||+|++||-++ -.||=+-..+.--|.+ + .+..|=.||||..
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 45788888888332 2799544443332322 2 3677888899986
No 239
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.79 E-value=21 Score=27.74 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=5.2
Q ss_pred ecCCCCcccc
Q 009735 508 VCAECGRRME 517 (527)
Q Consensus 508 ~CpeC~R~ME 517 (527)
.||-|||++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7888999985
No 240
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=29.67 E-value=25 Score=25.90 Aligned_cols=12 Identities=33% Similarity=0.966 Sum_probs=10.8
Q ss_pred ecCCCCccccee
Q 009735 508 VCAECGRRMEEF 519 (527)
Q Consensus 508 ~CpeC~R~ME~~ 519 (527)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999986
No 241
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=29.27 E-value=34 Score=38.36 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=21.5
Q ss_pred CCCCCceeecCCCCccccee----------eeeec-cC
Q 009735 500 AGRIPEKVVCAECGRRMEEF----------IMYRC-CT 526 (527)
Q Consensus 500 ~g~ip~~i~CpeC~R~ME~~----------v~YkC-Ch 526 (527)
++.+|=...||+|||...+- |.|.| |.
T Consensus 169 ~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG 206 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECG 206 (510)
T ss_pred CCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCC
Confidence 67888999999999998643 57777 54
No 242
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=86 Score=30.74 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCCCceeecccccCcEEEEEEecCCCChhH--HHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 154 CPTKRKVSIDVLRRKSVLLLVSDLDVSNEE--LFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 154 g~~~~kV~Is~L~gK~VlLyfSal~~~~~~--~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
..+|..|+++.++||.|++-=-|.-|.--+ -..|.+.|++.+ ...|+|+=.|.
T Consensus 21 d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~------~~Gl~ILaFPC 75 (171)
T KOG1651|consen 21 DLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYK------DQGLEILAFPC 75 (171)
T ss_pred cCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHh------hCCeEEEEecc
Confidence 346789999999999999988888774422 346999999996 34699999997
No 243
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=28.96 E-value=1.2e+02 Score=26.08 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=32.3
Q ss_pred cCceEEEEEccCC-hhHHHHHHHHHHHHHHHhC-CceeEEEeccC
Q 009735 325 MEQKHICLYGGED-LEWVRKFTALMGAVARAAG-IALEMLYVGKS 367 (527)
Q Consensus 325 ~egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~-~~~E~v~Vgkd 367 (527)
+.||.+++.|.++ -..|+++.+.+.++++..+ ..+.+..|.-|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 4688899999884 2556999999999987543 45777777665
No 244
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=28.74 E-value=1.9e+02 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=33.1
Q ss_pred cccccCcEEEEEEecCCCChhHHH--HHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 162 IDVLRRKSVLLLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 162 Is~L~gK~VlLyfSal~~~~~~~~--~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
+-.-.++.++..|++.-||.|.-. .|.++.+++- ..++..++|.|+
T Consensus 7 ~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i-----~~~~v~~~~~~~ 54 (162)
T PF13462_consen 7 IGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYI-----DPGKVKFVFRPV 54 (162)
T ss_dssp ES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT-----TTTTEEEEEEES
T ss_pred ecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhcc-----CCCceEEEEEEc
Confidence 334567888999999999999843 4667777762 345899999987
No 245
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=28.52 E-value=27 Score=42.42 Aligned_cols=22 Identities=32% Similarity=0.774 Sum_probs=19.5
Q ss_pred eeecCCCCcccceeeeeeccCC
Q 009735 506 KVVCAECGRRMEEFIMYRCCTD 527 (527)
Q Consensus 506 ~i~CpeC~R~ME~~v~YkCCh~ 527 (527)
..+||+|+||.|-.-.|-||.+
T Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~ 817 (1006)
T PRK12775 796 VATCPKCHRPLEGDEEYVCCAT 817 (1006)
T ss_pred CccCcccCCCCCCCceeEEecC
Confidence 3589999999999999999964
No 246
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.32 E-value=25 Score=26.93 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=9.3
Q ss_pred eecCCCCcccc
Q 009735 507 VVCAECGRRME 517 (527)
Q Consensus 507 i~CpeC~R~ME 517 (527)
-.||-|||||.
T Consensus 9 K~C~~C~rpf~ 19 (42)
T PF10013_consen 9 KICPVCGRPFT 19 (42)
T ss_pred CcCcccCCcch
Confidence 46999999984
No 247
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.96 E-value=98 Score=28.21 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=59.2
Q ss_pred chhhHHHHHHhhcCCCceeecCCCCCCHH---HHHHHHHhhCCCCCcEEEEeCCCCceecccHHHHHHHhCCccccCChh
Q 009735 220 TEAKEHKFEALQYMMPWFSVHHPSAIDPA---VIRYAKEKWDFRKKPILVVLDPQGRVVNQNALHMMWIWGSVAFPFSVA 296 (527)
Q Consensus 220 ~D~~~~~F~~~~~~MPWyAVpf~~~i~~~---~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~ 296 (527)
+|++-+.........|=.+|.||...|.. ..+.|+|+++|+|. |=.-|.|+- |=+.++..=|-+||-.+..
T Consensus 6 ~d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge-----lRA~Gdvl~-DQl~~l~R~GFdsf~l~~~ 79 (110)
T PF06073_consen 6 PDDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE-----LRAVGDVLR-DQLFYLRRCGFDSFELRED 79 (110)
T ss_pred CCCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc-----EEEeccchH-HHHHHHHHcCCCEEEeCCC
Confidence 37788888889999999999999876655 45788899999998 334566765 4455688999999999874
Q ss_pred hHHHhh
Q 009735 297 REEALW 302 (527)
Q Consensus 297 r~e~L~ 302 (527)
.--+.|
T Consensus 80 ~~~~~~ 85 (110)
T PF06073_consen 80 QDPEDA 85 (110)
T ss_pred CCHHHH
Confidence 444433
No 248
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.87 E-value=24 Score=36.17 Aligned_cols=11 Identities=55% Similarity=1.044 Sum_probs=7.1
Q ss_pred ceeecCCCCcc
Q 009735 505 EKVVCAECGRR 515 (527)
Q Consensus 505 ~~i~CpeC~R~ 515 (527)
+.|.||+|||.
T Consensus 220 ~iv~CP~CgRI 230 (239)
T COG1579 220 EIVFCPYCGRI 230 (239)
T ss_pred CCccCCccchH
Confidence 45667777774
No 249
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=26.86 E-value=1.2e+02 Score=23.85 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=17.9
Q ss_pred EEEecCCCChhHHH--HHHHHHHHHhhhccCCCCCeEEEEE
Q 009735 172 LLVSDLDVSNEELF--LLEQMYRESRQLSSRTESQYEVVWL 210 (527)
Q Consensus 172 LyfSal~~~~~~~~--~L~~iY~~lk~~~~~~~~~fEIVwI 210 (527)
.+||..+||.|.-. .|.+ .+-.||.+-|
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~-----------~~i~~~~i~i 32 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDK-----------KGVDYEEIDV 32 (75)
T ss_pred EEEeCCCChHHHHHHHHHHH-----------CCCcEEEEEC
Confidence 47888999998732 2422 2346887665
No 250
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.78 E-value=58 Score=29.51 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHhhhhcCCCC-Cccc--eecCCCCCCCCceeecCCCCccccee-eeee
Q 009735 476 VAMNDYLNENRTPY-HCNR--LILPGEAGRIPEKVVCAECGRRMEEF-IMYR 523 (527)
Q Consensus 476 ~Af~~y~~~~~~~~-~C~~--~~~p~~~g~ip~~i~CpeC~R~ME~~-v~Yk 523 (527)
.||+-+|+.+...- .|.. +.+- .+|....|.+||...+.. ..|.
T Consensus 42 e~L~faf~~~~~~T~~~ega~L~Ie----~vp~~~~C~~Cg~~~~~~~~~~~ 89 (117)
T PRK00564 42 SLFVSAFETFREESLVCKDAILDIV----DEKVELECKDCSHVFKPNALDYG 89 (117)
T ss_pred HHHHHHHHHHhcCCcccCCCEEEEE----ecCCEEEhhhCCCccccCCccCC
Confidence 35555555544433 3444 3332 588888999999887775 4554
No 251
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=26.55 E-value=79 Score=28.98 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=26.3
Q ss_pred ceEEEEEccCChhHH---HHHHHHHHHHHHHhCCceeEEEeccCCchhh
Q 009735 327 QKHICLYGGEDLEWV---RKFTALMGAVARAAGIALEMLYVGKSNPKEK 372 (527)
Q Consensus 327 gK~I~LYgg~d~~Wi---~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~ 372 (527)
.++-.|.+++ .|| +.+.|.+.+++++. -.+++-++..|...|.
T Consensus 41 ~~~~ilvi~e--~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~el 86 (129)
T PF14595_consen 41 KPYNILVITE--TWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKEL 86 (129)
T ss_dssp S-EEEEEE----TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHHH
T ss_pred CCcEEEEEEC--CCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChhH
Confidence 3333444444 477 99999999998864 4788888888755444
No 252
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=26.08 E-value=49 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=17.5
Q ss_pred CceeecCCCCcccceeeeee
Q 009735 504 PEKVVCAECGRRMEEFIMYR 523 (527)
Q Consensus 504 p~~i~CpeC~R~ME~~v~Yk 523 (527)
|..+.||.|+..+..-|.|+
T Consensus 1 p~~i~Cp~C~~~~~T~v~~~ 20 (67)
T smart00714 1 PYQLFCPRCQNNVTTRVETE 20 (67)
T ss_pred CcceECCCCCCEEEEEEEEE
Confidence 67799999999999888876
No 253
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=25.23 E-value=1.5e+02 Score=28.09 Aligned_cols=45 Identities=4% Similarity=-0.124 Sum_probs=34.3
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhC-CceeEEEeccCCch
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAG-IALEMLYVGKSNPK 370 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~-~~~E~v~Vgkd~~~ 370 (527)
.++.+.++|.+. -..|+++.+.+.++++..+ ..+.++.|.-|+..
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 467899999884 2446999999999987643 46888888877543
No 254
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=25.17 E-value=40 Score=24.52 Aligned_cols=20 Identities=35% Similarity=0.787 Sum_probs=13.2
Q ss_pred eecCCCCCCCCce---eecCCCCcc
Q 009735 494 LILPGEAGRIPEK---VVCAECGRR 515 (527)
Q Consensus 494 ~~~p~~~g~ip~~---i~CpeC~R~ 515 (527)
+.+| ...||+. +.|+.||..
T Consensus 12 y~i~--d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 12 YEID--DEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred EeCC--HHHCCCCCcEEECCCCCCE
Confidence 5565 3345544 999999864
No 255
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.08 E-value=1.6e+02 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=24.9
Q ss_pred EEEEccCChhHHHHHHHHHHHHHHHhCCceeEEEeccC
Q 009735 330 ICLYGGEDLEWVRKFTALMGAVARAAGIALEMLYVGKS 367 (527)
Q Consensus 330 I~LYgg~d~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd 367 (527)
|-+|+...-.+|+.....+ ++.|+++|.+-|+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L----~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL----DEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH----HHTTBEEEEEEGGGS
T ss_pred cEEEEcCCCcCHHHHHHHH----HHcCCeeeEcccccc
Confidence 4578777666665544444 556999999999998
No 256
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=25.07 E-value=33 Score=23.75 Aligned_cols=17 Identities=29% Similarity=0.852 Sum_probs=9.9
Q ss_pred ecCCCCccccee---eeeec
Q 009735 508 VCAECGRRMEEF---IMYRC 524 (527)
Q Consensus 508 ~CpeC~R~ME~~---v~YkC 524 (527)
.||.||-...+. +.++|
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C 20 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRC 20 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE
T ss_pred CcCCCCCEeEcCCCCEeEEC
Confidence 499999888755 67776
No 257
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=24.98 E-value=7.8e+02 Score=27.71 Aligned_cols=158 Identities=10% Similarity=0.035 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcchhhHHHHHHhhcCCCceeecCCCCCCHHHHHHHHHhhCCCC
Q 009735 182 EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTEAKEHKFEALQYMMPWFSVHHPSAIDPAVIRYAKEKWDFRK 261 (527)
Q Consensus 182 ~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D~~~~~F~~~~~~MPWyAVpf~~~i~~~~~r~ike~~~~~~ 261 (527)
+....|.++.++|+ +..++++. +|.+.+.+++-++--+++.+-=|.+.+.+-+. ..-+.+.+.++++.
T Consensus 352 ~~~~~l~~~~~~l~-------~~v~l~~~--~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~---~~~~~~~~~~~v~~ 419 (555)
T TIGR03143 352 SLRQQLVGIFGRLE-------NPVTLLLF--LDGSNEKSAELQSFLGEFASLSEKLNSEAVNR---GEEPESETLPKITK 419 (555)
T ss_pred HHHHHHHHHHHhcC-------CCEEEEEE--ECCCchhhHHHHHHHHHHHhcCCcEEEEEecc---ccchhhHhhcCCCc
Confidence 33456888888774 45777554 23333344444544456665558888866432 11245567889999
Q ss_pred CcEEEEeCCCCceecccHHHHHHHhCC-ccccCChhhHHHhhhhcccceeeccccCCCCcc----cccc--Cce-EEEEE
Q 009735 262 KPILVVLDPQGRVVNQNALHMMWIWGS-VAFPFSVAREEALWKEETWRIDLLADSVDPVIP----TWIM--EQK-HICLY 333 (527)
Q Consensus 262 iP~LVvL~pqGkv~~~nA~~mI~~wG~-~AfPFT~~r~e~L~~~e~w~lelL~d~id~~I~----~~i~--egK-~I~LY 333 (527)
.|.+++++.+|.-.+ |.=+|+ .++-|++-=+.=+. +++-.+.++ +.|+ +++ .|=+|
T Consensus 420 ~P~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~i~~i~~----------~~~~~~~l~~~~~~~i~~~~~~~~i~v~ 483 (555)
T TIGR03143 420 LPTVALLDDDGNYTG------LKFHGVPSGHELNSFILALYN----------AAGPGQPLGEELLEKIKKITKPVNIKIG 483 (555)
T ss_pred CCEEEEEeCCCcccc------eEEEecCccHhHHHHHHHHHH----------hcCCCCCCCHHHHHHHHhcCCCeEEEEE
Confidence 999999986664211 333453 45667442211111 222333332 2222 344 57788
Q ss_pred ccCChhHHHHHHHHHHHHHHHh-CCceeEEEeccC
Q 009735 334 GGEDLEWVRKFTALMGAVARAA-GIALEMLYVGKS 367 (527)
Q Consensus 334 gg~d~~Wi~~FT~~~~~i~~~~-~~~~E~v~Vgkd 367 (527)
-|..-..|.+=..++.+++... ++..||+-+..-
T Consensus 484 ~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 484 VSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred ECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 7888888877677777777765 788998887654
No 258
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.58 E-value=91 Score=21.10 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009735 92 INSIYNHLLQQLKLCHQ 108 (527)
Q Consensus 92 l~~i~~~L~~~l~~c~~ 108 (527)
+.+-+.-|.+||+.|..
T Consensus 6 lr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 6 LRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44444559999999974
No 259
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=24.48 E-value=24 Score=28.60 Aligned_cols=14 Identities=36% Similarity=0.708 Sum_probs=8.1
Q ss_pred ceeecCCCCcccce
Q 009735 505 EKVVCAECGRRMEE 518 (527)
Q Consensus 505 ~~i~CpeC~R~ME~ 518 (527)
.++.||.||++-+.
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999999876
No 260
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=24.11 E-value=1.9e+02 Score=31.06 Aligned_cols=104 Identities=8% Similarity=-0.026 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEEeccCCCCCcch--hhHHHHHHhhc---------CCCceeecCCCCCCHHHH
Q 009735 182 EELFLLEQMYRESRQLSSRTESQYEVVWLPIVDRSTPWTE--AKEHKFEALQY---------MMPWFSVHHPSAIDPAVI 250 (527)
Q Consensus 182 ~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpiVd~s~~w~D--~~~~~F~~~~~---------~MPWyAVpf~~~i~~~~~ 250 (527)
+.+..|.+..+++++.+....+..-|+|.-+ .-|.. .--+.+++.-. ..-|+....+. +..-.
T Consensus 211 e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~----~~~~~~~k~~~~iE~~G~~VV~dd~c~g~r~~~~~v~e--~~dp~ 284 (380)
T TIGR02263 211 EHNQMLADYLAAARKQEAPIKDNCRVIICGM----FCEQPPLNLIKSIELSGCYIVDDDFIIVHRFENNDVAL--AGDPL 284 (380)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCEEEEECc----CCCCchHHHHHHHHHCCCEEEEecCCccchhhhccCCC--CCCHH
Confidence 3366799999998754433456789999853 12333 22334554322 23344433221 12345
Q ss_pred HHHHHhhCCCCCcEEEEeCCC--CceecccHHHHHHHhCCccccC
Q 009735 251 RYAKEKWDFRKKPILVVLDPQ--GRVVNQNALHMMWIWGSVAFPF 293 (527)
Q Consensus 251 r~ike~~~~~~iP~LVvL~pq--Gkv~~~nA~~mI~~wG~~AfPF 293 (527)
+.|.++|--...|+-+..+|+ +|+ ....+|+.+|++||-=|
T Consensus 285 ~aLA~~Yl~~~~~c~~~~~~~~~~R~--~~i~~lvke~~aDGVI~ 327 (380)
T TIGR02263 285 QNLALAFLHDSISTAAKYDDDEADKG--KYLLDQVRKNAAEGVIF 327 (380)
T ss_pred HHHHHHHhhCCCCCccccCCChhhHH--HHHHHHHHHhCCCEEEE
Confidence 777777754446654445554 344 66788888888887433
No 261
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=23.98 E-value=2.4e+02 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=37.1
Q ss_pred CceEEEEEccCCh-hHHHHHHHHHHHHHHHhCCceeEEEeccCCchhh
Q 009735 326 EQKHICLYGGEDL-EWVRKFTALMGAVARAAGIALEMLYVGKSNPKEK 372 (527)
Q Consensus 326 egK~I~LYgg~d~-~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~~~e~ 372 (527)
++|-+.+-||+++ ..|+...+.+.+++++.+....++-|.-|...+-
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dl 69 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDF 69 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHH
Confidence 6789999999953 5569999999999987666688888888854433
No 262
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=23.85 E-value=86 Score=23.60 Aligned_cols=29 Identities=24% Similarity=0.661 Sum_probs=17.9
Q ss_pred CccceecCCCCCCCCceeecCCCCccccee
Q 009735 490 HCNRLILPGEAGRIPEKVVCAECGRRMEEF 519 (527)
Q Consensus 490 ~C~~~~~p~~~g~ip~~i~CpeC~R~ME~~ 519 (527)
.|..+..+... .--.+.+||.||..+-..
T Consensus 5 ~Cg~~l~~~~~-~~~~~~vC~~Cg~~~~~~ 33 (52)
T smart00661 5 KCGNMLIPKEG-KEKRRFVCRKCGYEEPIE 33 (52)
T ss_pred CCCCccccccC-CCCCEEECCcCCCeEECC
Confidence 46665554321 112488999999887654
No 263
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=23.83 E-value=2e+02 Score=36.86 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhhHHHhhcCCCcC---CCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhhccccccccccccccchh
Q 009735 7 TLSNLITAMLDLTKCIVEVKELPSD---YITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETW 83 (527)
Q Consensus 7 ~~~~Lvk~m~~v~~cI~e~~~l~~~---y~~~dvp~l~~a~~~IP~~vYW~I~sivac~~qi~~l~~~~~~~~~s~~~~~ 83 (527)
+=+.++..|.++.+|++.+-.-|++ ++.+ ..-++.|+-.--=++-++|+|.+-+.+=.+.|.+
T Consensus 1092 ~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLE-----e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~--------- 1157 (1692)
T KOG1020|consen 1092 EEAQFLYYVIQILECVLPLVANPSESFLASLE-----EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAK--------- 1157 (1692)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHH-----HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchH---------
Confidence 4467899999999999999888875 2221 1345777777777888888887776643222322
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccchhHHHHHhhhcccCCCCCccccCCCCc
Q 009735 84 ELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETIHIDNMKVLNRLLIHTKDDQLPLVECPTKR 158 (527)
Q Consensus 84 eLs~l~~Kl~~i~~~L~~~l~~c~~~I~~~~~~e~y~~l~~lf~~~~~D~m~vl~k~LI~~k~~~~pl~dg~~~~ 158 (527)
++..+.+.+-++|+.-+.+-.+.-+.-.++.+.+.+-+. .+|....+-..|..+|.+--
T Consensus 1158 -------~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsiftl---------G~l~Ryfdf~~~~~~g~~~~ 1216 (1692)
T KOG1020|consen 1158 -------VVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTL---------GLLSRYFDFPKPSNDGKTFL 1216 (1692)
T ss_pred -------HHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHH---------HHHHHhccCCCccCCCccch
Confidence 333333333344443333322212222446666655444 77888788888999998843
No 264
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.16 E-value=2.7e+02 Score=25.63 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=27.7
Q ss_pred CcEEEEEEecCCCChhHH-------HHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 167 RKSVLLLVSDLDVSNEEL-------FLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 167 gK~VlLyfSal~~~~~~~-------~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
++...|+||+|.+|.... ....+..+.+++.-.....+++..|-|-
T Consensus 16 ~~~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~ 68 (135)
T cd00419 16 REKDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSR 68 (135)
T ss_pred CCCCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCC
Confidence 567889999999875443 1244444445432111245788888764
No 265
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=23.10 E-value=47 Score=26.53 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=12.1
Q ss_pred CCCceeecCCCCcccce
Q 009735 502 RIPEKVVCAECGRRMEE 518 (527)
Q Consensus 502 ~ip~~i~CpeC~R~ME~ 518 (527)
..|..+.||+||.++--
T Consensus 22 ~~p~l~~C~~cG~~~~~ 38 (55)
T TIGR01031 22 TAPTLVVCPNCGEFKLP 38 (55)
T ss_pred cCCcceECCCCCCcccC
Confidence 35777888888876543
No 266
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=22.97 E-value=37 Score=22.52 Aligned_cols=10 Identities=40% Similarity=1.311 Sum_probs=4.9
Q ss_pred cCCCCcccce
Q 009735 509 CAECGRRMEE 518 (527)
Q Consensus 509 CpeC~R~ME~ 518 (527)
||+||+..+.
T Consensus 2 Cp~CG~~~~~ 11 (23)
T PF13240_consen 2 CPNCGAEIED 11 (23)
T ss_pred CcccCCCCCC
Confidence 4555554443
No 267
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=22.63 E-value=41 Score=24.06 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.4
Q ss_pred eeecCCCCcccce
Q 009735 506 KVVCAECGRRMEE 518 (527)
Q Consensus 506 ~i~CpeC~R~ME~ 518 (527)
.+.||.||.+-+.
T Consensus 25 ~v~C~~C~~~~~~ 37 (38)
T TIGR02098 25 KVRCGKCGHVWYA 37 (38)
T ss_pred EEECCCCCCEEEe
Confidence 6999999987553
No 268
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=22.41 E-value=1.8e+02 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=34.2
Q ss_pred CceEEEEEccC--ChhHHHHHHHHHHHHHHH-hCCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGGE--DLEWVRKFTALMGAVARA-AGIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg~--d~~Wi~~FT~~~~~i~~~-~~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
.||.+.|+|.. ...+|+.=.+.+.+++++ .+..++++.|+.|++ +.+++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~-~~~~~~~ 82 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP-EKLSRFA 82 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHH
Confidence 78888888854 345676555566666554 355799999999865 5555544
No 269
>PF14149 YhfH: YhfH-like protein
Probab=22.34 E-value=19 Score=26.95 Aligned_cols=13 Identities=46% Similarity=1.040 Sum_probs=10.5
Q ss_pred eecCCCCccccee
Q 009735 507 VVCAECGRRMEEF 519 (527)
Q Consensus 507 i~CpeC~R~ME~~ 519 (527)
-.|++||..||--
T Consensus 14 K~C~~CG~~i~EQ 26 (37)
T PF14149_consen 14 KKCTECGKEIEEQ 26 (37)
T ss_pred cccHHHHHHHHHH
Confidence 3699999999754
No 270
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.10 E-value=2.1e+02 Score=25.00 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=33.2
Q ss_pred CceEEEEEcc--CChhHHHHHHHHHHHHHHH-hCCceeEEEeccCCchhhhhhhh
Q 009735 326 EQKHICLYGG--EDLEWVRKFTALMGAVARA-AGIALEMLYVGKSNPKEKARRII 377 (527)
Q Consensus 326 egK~I~LYgg--~d~~Wi~~FT~~~~~i~~~-~~~~~E~v~Vgkd~~~e~v~~~~ 377 (527)
.||.+.|+|. ....+|+.=.+.+.++++. .+..++++.|+.|++ +.+++-.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~-~~~~~~~ 75 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV-ESHAKFA 75 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH-HHHHHHH
Confidence 5888888885 3346676555566666543 245689999999865 4454443
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.48 E-value=1.2e+02 Score=32.32 Aligned_cols=43 Identities=7% Similarity=-0.065 Sum_probs=35.4
Q ss_pred CceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 326 EQKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 326 egK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
--+-|.+||++. ...|+++|+.+.+++.+.+..|..+.|--|.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~ 85 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA 85 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc
Confidence 345788999994 2555999999999998889999999998874
No 272
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=21.16 E-value=1.7e+02 Score=23.42 Aligned_cols=12 Identities=0% Similarity=-0.186 Sum_probs=9.8
Q ss_pred EEEecCCCChhH
Q 009735 172 LLVSDLDVSNEE 183 (527)
Q Consensus 172 LyfSal~~~~~~ 183 (527)
.+||..+||.|.
T Consensus 2 ~ly~~~~Cp~C~ 13 (79)
T TIGR02181 2 TIYTKPYCPYCT 13 (79)
T ss_pred EEEecCCChhHH
Confidence 367889999987
No 273
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.01 E-value=1.7e+02 Score=27.28 Aligned_cols=44 Identities=11% Similarity=-0.029 Sum_probs=31.8
Q ss_pred CceEEEEEcc--CChhHHHHHHHHHHHHHHH-hCCceeEEEeccCCc
Q 009735 326 EQKHICLYGG--EDLEWVRKFTALMGAVARA-AGIALEMLYVGKSNP 369 (527)
Q Consensus 326 egK~I~LYgg--~d~~Wi~~FT~~~~~i~~~-~~~~~E~v~Vgkd~~ 369 (527)
.||++.|||- .....|+.-.+.+.++++. .+..+.++.|+.|.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 6899999994 4345677667777777664 345789999998754
No 274
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=21.01 E-value=1.8e+02 Score=24.01 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=31.4
Q ss_pred ceEEEEEccCC-hhHHHHHHHHHHHHHHHhCCceeEEEeccCC
Q 009735 327 QKHICLYGGED-LEWVRKFTALMGAVARAAGIALEMLYVGKSN 368 (527)
Q Consensus 327 gK~I~LYgg~d-~~Wi~~FT~~~~~i~~~~~~~~E~v~Vgkd~ 368 (527)
|+.+.++|.+. .+-|+.+.+.+.++|+.-+..+-.++|..+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD 54 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh
Confidence 67777777762 2345899999999988766678888887764
No 275
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.63 E-value=45 Score=22.70 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=7.4
Q ss_pred ceeecCCCCc
Q 009735 505 EKVVCAECGR 514 (527)
Q Consensus 505 ~~i~CpeC~R 514 (527)
..-.||+||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 3568999983
No 276
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.62 E-value=58 Score=23.68 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=13.0
Q ss_pred eecCCCCCCCCceeecCCCCcc
Q 009735 494 LILPGEAGRIPEKVVCAECGRR 515 (527)
Q Consensus 494 ~~~p~~~g~ip~~i~CpeC~R~ 515 (527)
+++---+|+=.++.+||.||.+
T Consensus 10 l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 10 LERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp -EEE--TT-SS-EEEETTTTEE
T ss_pred hhhhcCCCCCccceECCCCCCE
Confidence 3333337888899999999964
No 277
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.55 E-value=1.1e+02 Score=29.10 Aligned_cols=43 Identities=16% Similarity=0.383 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcc
Q 009735 83 WELSSLAHKINSIYNHLLQQLKLCHQLIEEKRQIESYQALVRLMETI 129 (527)
Q Consensus 83 ~eLs~l~~Kl~~i~~~L~~~l~~c~~~I~~~~~~e~y~~l~~lf~~~ 129 (527)
-.+|++++++.. ||++|..|+.+..=....+++..+++.|..-
T Consensus 71 ~~i~Sl~~~f~~----lk~~l~~C~~~~~Ce~~~~a~~qi~~~f~kl 113 (137)
T smart00188 71 EHVNSLGEKLKT----LRLRLRRCHRFLPCENKSKAVEQVKNAFNKL 113 (137)
T ss_pred hhHHHHHHHHHH----HHHHHHHCccccCccchhHHHHHHHHHHHHH
Confidence 345666655544 7778888875553333366677777777654
No 278
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=20.42 E-value=2.4e+02 Score=24.26 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCceecc--cHHHHHHHhCCc
Q 009735 247 PAVIRYAKEKWDFRKKPILVVLDPQGRVVNQ--NALHMMWIWGSV 289 (527)
Q Consensus 247 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~--nA~~mI~~wG~~ 289 (527)
.+++||-.|.|++...-. +++..+|--+|+ .|-..-..||++
T Consensus 29 taVlkfaAeeF~vp~~ts-aiItndG~GInP~QTag~vflKhGse 72 (76)
T PF03671_consen 29 TAVLKFAAEEFKVPPATS-AIITNDGVGINPQQTAGNVFLKHGSE 72 (76)
T ss_dssp HHHHHHHHHHTTS-SSSE-EEEESSS-EE-TTSBHHHHHHHT-SE
T ss_pred HHHHHHHHHHcCCCCceE-EEEecCCcccccchhhhhhHhhcCcE
Confidence 579999999999998777 777778877765 466666678864
No 279
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14 E-value=1.2e+02 Score=32.19 Aligned_cols=90 Identities=10% Similarity=0.154 Sum_probs=65.7
Q ss_pred CCCCCcchHHHHhhhchhHHHHHHHHHHHHhhhhhccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 009735 32 YITPDTPEMAAVTAHIPTAVYWIIRSIVACAGQILGLIGMGHEYIISTTETWELSSLAHKINSIYNHLLQQLKLCHQLIE 111 (527)
Q Consensus 32 y~~~dvp~l~~a~~~IP~~vYW~I~sivac~~qi~~l~~~~~~~~~s~~~~~eLs~l~~Kl~~i~~~L~~~l~~c~~~I~ 111 (527)
|+.+.-|+|..++..|. -|+....++.- +. -..-.-+.||+++-.+.--|-..-.-+.+
T Consensus 206 ~~~e~~p~L~s~Lgr~~--------------MQ~GD~k~a~~-----yf--~~vek~~~kL~~~q~~~~V~~n~a~i~lg 264 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRIS--------------MQIGDIKTAEK-----YF--QDVEKVTQKLDGLQGKIMVLMNSAFLHLG 264 (366)
T ss_pred hCCcccHHHHHHHHHHH--------------HhcccHHHHHH-----HH--HHHHHHHhhhhccchhHHHHhhhhhheec
Confidence 67777888888876553 35555543311 11 12235677888888888888888888999
Q ss_pred hhhhHHHHHHHHHHhhcccchhHHHHHhhhc
Q 009735 112 EKRQIESYQALVRLMETIHIDNMKVLNRLLI 142 (527)
Q Consensus 112 ~~~~~e~y~~l~~lf~~~~~D~m~vl~k~LI 142 (527)
.+..+++|....++..+...|++-+-||||+
T Consensus 265 ~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred ccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 9999999999999988877788887778877
No 280
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=20.08 E-value=94 Score=35.10 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCccccCCCCceeecc---------cccCcEEEEEEecCCCChhHHHHHHHHHHHHhhhccCCCCCeEEEEEec
Q 009735 148 QLPLVECPTKRKVSID---------VLRRKSVLLLVSDLDVSNEELFLLEQMYRESRQLSSRTESQYEVVWLPI 212 (527)
Q Consensus 148 ~~pl~dg~~~~kV~Is---------~L~gK~VlLyfSal~~~~~~~~~L~~iY~~lk~~~~~~~~~fEIVwIpi 212 (527)
.||+-+-.+++.|.+= -=.+|.|++=|=|.||++|. .|..+|++|-+. -+++=.|||-=|
T Consensus 356 SqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk--~laP~~eeLAe~---~~~~~~vviAKm 424 (493)
T KOG0190|consen 356 SQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCK--ALAPIYEELAEK---YKDDENVVIAKM 424 (493)
T ss_pred cCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhh--hhhhHHHHHHHH---hcCCCCcEEEEe
Confidence 4677766664444321 12489999999999999986 467888888542 233558888876
Done!