Query 009736
Match_columns 527
No_of_seqs 424 out of 1702
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 16:43:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1843 Uncharacterized conser 100.0 4.5E-64 9.7E-69 513.1 7.5 424 87-525 40-464 (473)
2 COG2930 Uncharacterized conser 100.0 9.6E-52 2.1E-56 387.7 15.5 210 310-520 10-221 (227)
3 PF04366 DUF500: Family of unk 100.0 1.3E-33 2.8E-38 255.4 14.0 126 393-521 1-126 (126)
4 KOG1843 Uncharacterized conser 100.0 2.2E-34 4.7E-39 295.4 3.9 216 310-526 3-219 (473)
5 PF01363 FYVE: FYVE zinc finge 99.7 8.4E-19 1.8E-23 142.1 2.3 67 212-279 1-68 (69)
6 smart00064 FYVE Protein presen 99.6 1.6E-16 3.5E-21 128.4 4.1 66 212-279 2-67 (68)
7 KOG1729 FYVE finger containing 99.5 1.9E-15 4.1E-20 153.7 3.0 71 207-280 155-226 (288)
8 PTZ00303 phosphatidylinositol 99.5 1.3E-14 2.8E-19 158.7 3.5 72 209-280 448-531 (1374)
9 KOG1818 Membrane trafficking a 99.5 1.7E-14 3.7E-19 158.1 2.6 70 207-281 155-224 (634)
10 KOG1819 FYVE finger-containing 99.5 1.7E-14 3.8E-19 151.9 1.9 66 210-277 891-961 (990)
11 KOG1409 Uncharacterized conser 99.3 3E-14 6.5E-19 145.4 -4.6 140 125-283 194-354 (404)
12 KOG1842 FYVE finger-containing 99.3 9.7E-14 2.1E-18 145.2 -1.2 117 204-334 164-333 (505)
13 cd00065 FYVE FYVE domain; Zinc 99.3 8.2E-13 1.8E-17 102.9 2.9 55 220-276 2-56 (57)
14 KOG1841 Smad anchor for recept 99.1 3.1E-11 6.8E-16 137.3 1.3 65 207-274 544-608 (1287)
15 KOG4424 Predicted Rho/Rac guan 98.6 9.5E-09 2.1E-13 111.3 -0.3 130 211-344 408-552 (623)
16 KOG1811 Predicted Zn2+-binding 97.1 4.5E-05 9.8E-10 83.7 -3.0 65 212-278 314-383 (1141)
17 KOG0230 Phosphatidylinositol-4 96.9 0.00052 1.1E-08 82.0 3.0 49 219-280 4-52 (1598)
18 PF02318 FYVE_2: FYVE-type zin 96.6 0.0013 2.8E-08 59.1 2.4 51 220-278 54-104 (118)
19 KOG0230 Phosphatidylinositol-4 95.7 0.0042 9E-08 74.6 1.2 34 215-251 92-125 (1598)
20 PF06577 DUF1134: Protein of u 95.5 0.14 3E-06 48.2 10.4 118 354-486 39-158 (160)
21 KOG1841 Smad anchor for recept 91.2 0.12 2.7E-06 61.0 2.4 57 209-280 646-702 (1287)
22 KOG1729 FYVE finger containing 89.8 0.066 1.4E-06 55.4 -1.2 65 212-277 12-81 (288)
23 KOG0993 Rab5 GTPase effector R 89.0 0.016 3.4E-07 61.6 -6.5 66 212-281 460-527 (542)
24 COG3874 Uncharacterized conser 87.4 1.7 3.7E-05 39.8 6.3 50 318-374 6-55 (138)
25 TIGR00622 ssl1 transcription f 80.9 1.3 2.9E-05 39.7 2.7 41 213-253 48-97 (112)
26 PRK00464 nrdR transcriptional 78.2 1.1 2.3E-05 42.5 1.3 26 222-247 2-38 (154)
27 COG5400 Uncharacterized protei 77.3 11 0.00024 36.2 7.7 118 354-486 84-203 (205)
28 PF09538 FYDLN_acid: Protein o 76.3 1.6 3.5E-05 38.9 1.8 33 212-247 4-36 (108)
29 KOG0320 Predicted E3 ubiquitin 76.0 0.34 7.3E-06 46.7 -2.7 50 220-281 131-180 (187)
30 TIGR02300 FYDLN_acid conserved 73.2 2.1 4.5E-05 39.2 1.7 33 212-247 4-36 (129)
31 KOG1314 DHHC-type Zn-finger pr 71.1 1.3 2.9E-05 46.8 0.0 35 209-246 75-114 (414)
32 PF07975 C1_4: TFIIH C1-like d 69.3 1.1 2.3E-05 34.8 -0.9 31 222-252 1-36 (51)
33 KOG4275 Predicted E3 ubiquitin 68.5 0.81 1.8E-05 47.2 -2.1 49 218-277 42-90 (350)
34 PRK00420 hypothetical protein; 62.4 4.9 0.00011 36.1 1.9 26 220-245 23-48 (112)
35 PF13717 zinc_ribbon_4: zinc-r 60.8 5 0.00011 28.7 1.3 26 222-247 4-35 (36)
36 PRK00432 30S ribosomal protein 57.9 6.9 0.00015 30.1 1.7 28 220-247 20-47 (50)
37 PF13719 zinc_ribbon_5: zinc-r 57.3 6.5 0.00014 28.2 1.4 27 221-247 3-35 (37)
38 KOG3576 Ovo and related transc 56.6 2.5 5.5E-05 41.7 -1.1 34 216-249 113-157 (267)
39 PF12773 DZR: Double zinc ribb 56.4 7.7 0.00017 29.1 1.8 27 219-245 11-37 (50)
40 KOG0978 E3 ubiquitin ligase in 55.9 1.4 3E-05 50.7 -3.5 45 220-277 643-687 (698)
41 smart00154 ZnF_AN1 AN1-like Zi 55.0 7.3 0.00016 28.3 1.4 26 223-251 1-26 (39)
42 PHA02768 hypothetical protein; 53.9 5.4 0.00012 31.4 0.6 27 221-247 6-41 (55)
43 KOG2164 Predicted E3 ubiquitin 53.2 3.8 8.2E-05 45.3 -0.5 52 220-280 186-237 (513)
44 PF01485 IBR: IBR domain; Int 52.9 11 0.00025 29.0 2.3 34 221-254 19-57 (64)
45 KOG0317 Predicted E3 ubiquitin 50.3 4.9 0.00011 41.5 -0.2 48 220-281 239-286 (293)
46 PF07282 OrfB_Zn_ribbon: Putat 49.5 13 0.00028 29.7 2.2 28 220-247 28-56 (69)
47 PF01529 zf-DHHC: DHHC palmito 49.4 9.7 0.00021 35.5 1.6 29 216-247 44-72 (174)
48 KOG3799 Rab3 effector RIM1 and 47.4 17 0.00037 33.7 2.8 70 220-296 65-138 (169)
49 PRK00398 rpoP DNA-directed RNA 47.4 11 0.00025 27.9 1.4 24 221-245 4-29 (46)
50 PF15232 DUF4585: Domain of un 46.7 12 0.00025 31.3 1.5 27 83-109 14-48 (75)
51 PF14634 zf-RING_5: zinc-RING 45.6 4.5 9.7E-05 29.7 -1.0 32 222-255 1-32 (44)
52 TIGR02874 spore_ytfJ sporulati 45.4 83 0.0018 28.9 6.9 53 316-374 2-54 (125)
53 PF14445 Prok-RING_2: Prokaryo 45.0 4.1 8.9E-05 31.5 -1.3 45 221-279 8-52 (57)
54 PF03604 DNA_RNApol_7kD: DNA d 43.5 15 0.00033 25.7 1.4 24 222-245 2-25 (32)
55 TIGR01031 rpmF_bact ribosomal 42.6 15 0.00033 28.8 1.5 26 215-245 21-47 (55)
56 smart00647 IBR In Between Ring 41.8 22 0.00047 27.4 2.3 34 221-254 19-57 (64)
57 PF09889 DUF2116: Uncharacteri 41.3 11 0.00024 30.1 0.5 30 237-283 3-33 (59)
58 KOG1814 Predicted E3 ubiquitin 39.3 13 0.00029 40.2 1.0 43 211-254 360-403 (445)
59 TIGR00570 cdk7 CDK-activating 39.2 7.9 0.00017 40.6 -0.7 50 221-280 4-55 (309)
60 COG5151 SSL1 RNA polymerase II 38.6 14 0.00031 38.7 0.9 41 213-253 355-404 (421)
61 smart00659 RPOLCX RNA polymera 38.4 18 0.00038 27.1 1.2 23 222-244 4-26 (44)
62 PF15616 TerY-C: TerY-C metal 38.0 17 0.00037 33.6 1.3 24 220-249 77-100 (131)
63 PF13901 DUF4206: Domain of un 37.4 15 0.00032 36.1 0.9 43 238-280 1-47 (202)
64 PF10571 UPF0547: Uncharacteri 37.3 19 0.00041 24.0 1.1 23 222-247 2-24 (26)
65 TIGR01562 FdhE formate dehydro 37.2 28 0.0006 36.6 2.9 61 220-281 184-265 (305)
66 PRK04136 rpl40e 50S ribosomal 36.8 18 0.0004 27.7 1.1 23 220-245 14-36 (48)
67 smart00064 FYVE Protein presen 35.6 29 0.00063 27.5 2.2 42 27-68 2-44 (68)
68 TIGR03826 YvyF flagellar opero 35.4 13 0.00028 34.6 0.2 35 238-288 4-42 (137)
69 PRK14559 putative protein seri 35.3 20 0.00044 41.4 1.7 31 219-254 14-50 (645)
70 PF10497 zf-4CXXC_R1: Zinc-fin 35.2 11 0.00024 33.3 -0.3 57 219-278 6-71 (105)
71 PRK03564 formate dehydrogenase 34.2 30 0.00065 36.4 2.6 61 220-281 187-265 (309)
72 PF07191 zinc-ribbons_6: zinc- 33.9 27 0.00058 28.9 1.7 55 222-280 3-62 (70)
73 COG1773 Rubredoxin [Energy pro 33.8 32 0.00069 27.2 2.0 41 236-276 2-44 (55)
74 KOG1315 Predicted DHHC-type Zn 33.1 19 0.00041 37.8 0.9 28 215-245 104-131 (307)
75 PF10367 Vps39_2: Vacuolar sor 31.8 43 0.00093 28.4 2.8 31 220-253 78-108 (109)
76 PRK04023 DNA polymerase II lar 31.8 31 0.00067 41.6 2.4 45 220-280 626-675 (1121)
77 KOG3795 Uncharacterized conser 31.3 21 0.00046 34.5 0.8 22 230-252 9-33 (230)
78 PRK12286 rpmF 50S ribosomal pr 31.2 26 0.00057 27.7 1.2 20 220-244 27-47 (57)
79 PF13639 zf-RING_2: Ring finge 30.7 13 0.00028 27.0 -0.6 34 221-256 1-34 (44)
80 TIGR02098 MJ0042_CXXC MJ0042 f 30.3 31 0.00068 24.3 1.4 10 222-231 4-13 (38)
81 COG0675 Transposase and inacti 30.2 31 0.00068 34.9 2.0 26 218-247 307-332 (364)
82 KOG1311 DHHC-type Zn-finger pr 30.1 23 0.00051 36.4 1.0 25 220-247 113-137 (299)
83 COG1327 Predicted transcriptio 30.1 24 0.00053 33.3 1.0 13 235-247 26-38 (156)
84 KOG0263 Transcription initiati 30.1 24 0.00051 40.9 1.1 80 90-181 507-598 (707)
85 KOG3173 Predicted Zn-finger pr 29.6 27 0.00059 33.5 1.2 28 220-251 105-132 (167)
86 PF09579 Spore_YtfJ: Sporulati 29.2 99 0.0021 26.2 4.5 20 355-374 6-25 (83)
87 PLN03208 E3 ubiquitin-protein 28.3 17 0.00036 35.8 -0.4 61 215-280 13-80 (193)
88 PF06750 DiS_P_DiS: Bacterial 27.9 35 0.00077 29.4 1.6 26 220-245 33-66 (92)
89 PF01927 Mut7-C: Mut7-C RNAse 27.8 24 0.00052 32.8 0.5 18 215-232 86-103 (147)
90 PF13923 zf-C3HC4_2: Zinc fing 26.6 19 0.00042 25.5 -0.3 28 223-254 1-28 (39)
91 PF15135 UPF0515: Uncharacteri 26.4 38 0.00082 34.6 1.7 34 215-248 127-166 (278)
92 KOG1313 DHHC-type Zn-finger pr 26.2 21 0.00046 36.9 -0.1 24 220-246 102-125 (309)
93 COG1996 RPC10 DNA-directed RNA 26.1 32 0.0007 26.5 0.9 24 221-244 7-31 (49)
94 KOG0823 Predicted E3 ubiquitin 25.5 17 0.00038 36.5 -0.9 34 241-280 63-96 (230)
95 TIGR01712 phage_N6A_met phage 25.3 1.8E+02 0.0039 28.0 6.0 60 307-367 64-124 (166)
96 KOG2593 Transcription initiati 24.8 31 0.00067 37.7 0.8 34 220-253 128-169 (436)
97 TIGR02605 CxxC_CxxC_SSSS putat 24.8 34 0.00073 25.8 0.8 12 222-233 7-18 (52)
98 PRK00564 hypA hydrogenase nick 24.6 37 0.0008 30.5 1.1 25 220-245 71-96 (117)
99 TIGR00100 hypA hydrogenase nic 24.5 37 0.00079 30.4 1.1 25 220-245 70-94 (115)
100 COG5574 PEX10 RING-finger-cont 24.3 19 0.00041 37.0 -0.9 47 220-278 215-261 (271)
101 KOG0704 ADP-ribosylation facto 24.2 27 0.0006 37.2 0.2 52 86-139 18-70 (386)
102 PF14353 CpXC: CpXC protein 23.9 41 0.00089 30.2 1.3 10 222-231 3-12 (128)
103 PF06221 zf-C2HC5: Putative zi 23.8 28 0.00062 27.6 0.2 13 237-249 18-30 (57)
104 KOG3576 Ovo and related transc 23.6 21 0.00046 35.4 -0.7 61 220-280 145-224 (267)
105 PF14835 zf-RING_6: zf-RING of 22.6 52 0.0011 26.9 1.5 28 222-254 9-37 (65)
106 PF07503 zf-HYPF: HypF finger; 22.5 24 0.00052 25.2 -0.4 17 223-239 2-18 (35)
107 smart00834 CxxC_CXXC_SSSS Puta 22.2 45 0.00098 23.5 1.0 12 222-233 7-18 (41)
108 TIGR00244 transcriptional regu 22.1 49 0.0011 31.2 1.4 13 235-247 26-38 (147)
109 COG1645 Uncharacterized Zn-fin 22.0 44 0.00096 30.9 1.1 27 220-255 28-54 (131)
110 PF04216 FdhE: Protein involve 21.7 40 0.00088 34.7 0.9 62 221-282 173-252 (290)
111 COG1198 PriA Primosomal protei 21.7 61 0.0013 38.1 2.4 10 222-231 446-455 (730)
112 KOG1829 Uncharacterized conser 21.7 37 0.00081 38.7 0.7 62 219-280 339-405 (580)
113 PF01155 HypA: Hydrogenase exp 21.6 32 0.00069 30.6 0.1 25 220-245 70-94 (113)
114 PF02945 Endonuclease_7: Recom 21.5 34 0.00073 29.0 0.2 27 220-246 22-50 (81)
115 COG5273 Uncharacterized protei 21.3 45 0.00097 35.0 1.1 27 217-246 106-132 (309)
116 KOG2932 E3 ubiquitin ligase in 21.0 35 0.00075 35.9 0.2 50 220-284 90-139 (389)
117 KOG4739 Uncharacterized protei 20.6 40 0.00086 34.1 0.5 44 222-279 5-48 (233)
118 PRK14890 putative Zn-ribbon RN 20.3 71 0.0015 25.6 1.8 33 220-252 7-43 (59)
119 PF14803 Nudix_N_2: Nudix N-te 20.3 48 0.001 23.5 0.8 13 264-276 18-30 (34)
120 PHA02942 putative transposase; 20.3 71 0.0015 34.5 2.4 28 220-247 325-352 (383)
121 cd00162 RING RING-finger (Real 20.2 29 0.00062 24.0 -0.4 30 222-255 1-30 (45)
No 1
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.5e-64 Score=513.11 Aligned_cols=424 Identities=40% Similarity=0.515 Sum_probs=397.9
Q ss_pred ccccCCCCCCCCCCceeecccCCCCCCCCcccccCcccCCCcccCCCCCccccccCCceeEehhHHHHHHHhhcCcceee
Q 009736 87 KYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVVEMLLAARGKVHAL 166 (527)
Q Consensus 87 ~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~w~~~~~~~~~l~~~dv~~~~l~~~~~Kv~al 166 (527)
-|++|+.|. +|++|+|++..+.+|..|.++++||+.++++.|..+..+++++++|+|+.++..--..+-.++
T Consensus 40 Pyvl~da~g--------l~~i~~lkegflfsgr~Gsgviv~~l~dGtwsapsa~~~~g~g~g~~Vgveltd~V~ilNs~~ 111 (473)
T KOG1843|consen 40 PYVLKDAPG--------LVSIPVLKEGFLFSGRAGSGVIVGYLKDGTWSAPSAIAEAGEGAGGMVGVELTDFVIILNSAL 111 (473)
T ss_pred cceeccCCc--------ceEeeeecccccccccccCceeeeecCCCCcCcchhhhhccccchhhhHHHHHHHHHhhcchH
Confidence 477888886 899999999999999999999999999999999999999999999999998776555555667
Q ss_pred eeccCCCCccccchhhhHHHHHHHHHHHHHhhccCCccccccCCCCCcccCCCCcccccccccccccccccccccccCce
Q 009736 167 AKGDIHGCNFSWMSSHLLEQAWQEMAQTLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGI 246 (527)
Q Consensus 167 ~~~d~~~~~~S~~~~~~le~~~~~~~~~l~~~~~~~~~~~~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~i 246 (527)
+.....+..+.++... |..++..|.+.+....++.++.++|.|.+++....|+.|..+|+.|+.||||||.|+.+
T Consensus 112 av~~f~~~G~itLGgn-----~svsAgPLgr~aea~a~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~ 186 (473)
T KOG1843|consen 112 AVQSFARFGTITLGGN-----LSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGI 186 (473)
T ss_pred hhhhhhhcCeeeecCc-----ceeccCcccccchhhhhhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCc
Confidence 7777777777776432 56788888888888889999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCeeeccccCCCCCceeeCcchhhhhccchhhhhhcccccccCCcCCCCccccccceeccCCCCCHHHHHHHHH
Q 009736 247 FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPYLMNQVSHAAQLPTRDLTDLSTLRSWVNFPWGQSMEYEIYKAA 326 (527)
Q Consensus 247 fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~l~~~~S~a~~~p~~dlsd~~~lR~wln~P~~~sl~~eI~KAa 326 (527)
||..|+.-+..+|..+.-..++|||+.|+..|...|.+++++++++.|.+.+|++|+...|+|+|+|++.+|+++|+|++
T Consensus 187 ~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~~~q~~~~d~~~da~qy~d~d~~Di~~s~sstn~~~~~~~e~s~~rra 266 (473)
T KOG1843|consen 187 FCRAKSILSGLVPVPFAADPLQRVLDSCAFNLESVQGSLDDQYSDAAQYADHDYTDIPTSRSSTNFPSGRSMERSIYRRA 266 (473)
T ss_pred cchhhhhhccCCCCCcccCCHHHHHhhHhhccCCCccccccccCcccccCcccccccccccccccCcccCcchHHHHHhh
Confidence 99999999888887788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-hccCcCCCCCCchhHHHhhcceeEEEEEeeeeEEEEEEeeeEEEEEEcCCCCcCccceEEeecceEEEEecce
Q 009736 327 NTIRGY-SKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGE 405 (527)
Q Consensus 327 ~~L~~~-~k~~~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~gg~~G~GvviaR~~dG~WSaPs~i~~~g~s~Glq~G~e 405 (527)
++|+.+ +++....+|..| ...+.+||||+++++.++|.+.....|+|++++|+.+|+||+|++|...|.+||.|+|+|
T Consensus 267 ~slrg~r~~~~dddded~~-~a~~srakgLa~~t~~~~g~l~~yk~~s~~~~srR~~Gs~s~~s~~s~~glgWgaq~gge 345 (473)
T KOG1843|consen 267 NSLRGYRSRVDDDDDEDSI-DAGLSRAKGLAPITVARSGVLDTYKLGSSLVVSRRNDGSWSPRSAISRFGLGWGAQAGGE 345 (473)
T ss_pred hhcccceeecccCchhhhh-hhhhhhcccCCcccccccccccccccccccceecccCCCCCCcchhcccccccchhcccc
Confidence 999998 566667788888 889999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeEEEEEeCHHHHHHhhcCCCeEEccceeEEeecccccccccccccCCCcceEEEEEeccceEEEeeeeeeEEEecchH
Q 009736 406 LTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGCSLEGSVFTTRTQE 485 (527)
Q Consensus 406 ~~d~Vivl~t~~al~~f~~~~~~~lGad~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~skGlf~GvSl~G~~i~~~~d~ 485 (527)
..|++||+++.+|++.|..+.++.+|+..++++||.||..++++.+++++++.+++|+.+||+|+|+||++.....+.+.
T Consensus 346 y~dfiivlrd~ea~~tf~s~~h~~~Ga~~s~a~~~s~r~~esdi~a~S~~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysf 425 (473)
T KOG1843|consen 346 YSDFIIVLRDYEAIQTFRSGTHRVRGAGLSAAVGPSGRAVESDIRAGSSGYSKCGTYSASKGAFVGCSLEPNIATALYSF 425 (473)
T ss_pred cccchhhcchhhhhhccccccccccccccccccCcCccchhhcccccCCcccccccccCCCCcccccccCcceeeeeehh
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCChhhhccCCCCCChHHHHHHHHHHHHHHhh
Q 009736 486 NSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKL 525 (527)
Q Consensus 486 N~~~YG~~~vt~~dIL~g~v~~p~~a~~L~~~L~~~~~~~ 525 (527)
|.+|||.+.....|||. .++.|+++.+||.+|.+++++|
T Consensus 426 age~~GDl~f~kgDii~-il~ks~s~~dwwtgr~~~~egi 464 (473)
T KOG1843|consen 426 AGEQPGDLSFQKGDIIT-ILKKSDSANDWWTGRGNGYEGI 464 (473)
T ss_pred ccCCCCCcccccCceEE-EecCCcchhhHHHhhccccccc
Confidence 99999998899999999 9999999999999999999876
No 2
>COG2930 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.6e-52 Score=387.67 Aligned_cols=210 Identities=39% Similarity=0.617 Sum_probs=196.9
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhhc-cCcCCCCCCchhHHHhhcceeEEEE-EeeeeEEEEEEeeeEEEEEEcCCCCcCc
Q 009736 310 VNFPWGQSMEYEIYKAANTIRGYSK-VGFLKPEKSIPDIILRQAKGLAILS-VAKVGVMVTYNIGTGLVIARRNDGSWSP 387 (527)
Q Consensus 310 ln~P~~~sl~~eI~KAa~~L~~~~k-~~~~~pd~~iP~~~l~~AkGlai~~-v~K~G~~~gg~~G~GvviaR~~dG~WSa 387 (527)
+++|.++++..+..|++.+...+.. .-.+.||..||+++|++||||+||| +.|+||++||++|+||+++|.++|+||+
T Consensus 10 i~~a~~~s~~s~~~k~~~~~s~~v~~~~~~~~~~~ip~~lL~rAkGi~Iip~vLkaGFvigGr~GqGvl~~r~~~nTWs~ 89 (227)
T COG2930 10 IPNAQGSSFASETNKAAKTNSSFVLTEQRLGPDQVIPPSLLERAKGIVIIPSVLKAGFVIGGRYGQGVLVARLPDNTWSA 89 (227)
T ss_pred CCCccchhhcchhhhhhhhhhhhcchhhhhCCcccCCHHHHhhcCeeEEehhhccccEEEeccccceEEEecCCCCCccc
Confidence 4577888999999999988877754 2346788999999999999999999 9999999999999999999999999999
Q ss_pred cceEEeecceEEEEecceeEeEEEEEeCHHHHHHhhcCCCeEEccceeEEeecccccccccccccCCCcceEEEEEeccc
Q 009736 388 PSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKG 467 (527)
Q Consensus 388 Ps~i~~~g~s~Glq~G~e~~d~Vivl~t~~al~~f~~~~~~~lGad~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~skG 467 (527)
|+|++|+|+|+|+|+|+|++|+|||||+++||++|..-++|+||+|+|+++||+||++++...+..++.+.||+|++++|
T Consensus 90 p~~v~~~g~siG~q~G~qs~d~v~i~~~~~av~~f~~~g~iTlGg~~SVAagplGrna~aa~d~~~~~~a~v~sys~~kG 169 (227)
T COG2930 90 PSFVKMAGASIGGQAGVQSTDFVIILNTDEAVDSFAEFGTITLGGNASVAAGPLGRNAEAAADASLGGVAAVFSYSKAKG 169 (227)
T ss_pred chhhhhhcccccccccceeeeEEEEEcchHHHHHHHhcCcEEecceeEEeeccccccchhccccccCCcceEEEEEeccc
Confidence 99999999999999999999999999999999999976899999999999999999988877777678899999999999
Q ss_pred eEEEeeeeeeEEEecchHhhhccCCCCCChhhhccCCCCCChHHHHHHHHHHH
Q 009736 468 AFVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALED 520 (527)
Q Consensus 468 lf~GvSl~G~~i~~~~d~N~~~YG~~~vt~~dIL~g~v~~p~~a~~L~~~L~~ 520 (527)
||+|+||||+.|.+|.++|++|||. .+||+.||.|++..||+|++|+..|+.
T Consensus 170 LfAGvSvEGs~i~~~~eanr~~Y~~-~~t~k~il~grv~~ppaad~l~~~l~~ 221 (227)
T COG2930 170 LFAGVSVEGSAITERREANRKFYGD-NITPKMILSGRVAEPPAADPLARVLNS 221 (227)
T ss_pred ceeeeeeccceeeehhhhhhHHhcC-CCCHHHhhcCccCCCCcccHHHHHHHh
Confidence 9999999999999999999999998 899999999999999999999999974
No 3
>PF04366 DUF500: Family of unknown function (DUF500); InterPro: IPR007461 This entry corresponds to proteins having the Ysc84 actin binding domain (YAB). This 184 amino acid domain lies at the N terminus of the Saccharomyces cerevisiae (Baker's yeast) protein Ysc84 (P32793 from SWISSPROT). It is essential for the organisation of the actin cytoskeleton, and interacts with the Arp2/3 complex []. Homologous domains are found across a range of species. In fungi and vertebrates the domain is at the N terminus, while there is an SH3 domain at the C terminus. In plants the domain seems to be at the C terminus and in association with a FYVE domain. Interestingly, the domain is absent in invertebrates. The domain is also found in prokaryotes, where presumable it is also involved in protein binding, perhaps to the prokaryotic homologue of actin [].
Probab=100.00 E-value=1.3e-33 Score=255.36 Aligned_cols=126 Identities=44% Similarity=0.710 Sum_probs=119.0
Q ss_pred eecceEEEEecceeEeEEEEEeCHHHHHHhhcCCCeEEccceeEEeecccccccccccccCCCcceEEEEEeccceEEEe
Q 009736 393 SFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGAFVGC 472 (527)
Q Consensus 393 ~~g~s~Glq~G~e~~d~Vivl~t~~al~~f~~~~~~~lGad~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~skGlf~Gv 472 (527)
++++|+|||+|+|.+|+||||||++||+.|.+ ++|+||+++++++||+|+++++++.... +.+++|+|++|||+|+|+
T Consensus 1 ~~g~~~Glq~G~~~~d~Vlvl~t~~al~~f~~-~~~~lG~~~s~a~gp~g~~~~~~~~~~~-~~~~v~~ys~s~Gl~~G~ 78 (126)
T PF04366_consen 1 ISGASVGLQAGAQSYDVVLVLMTDEALESFIK-GKFTLGGDASAAAGPVGRSAEADTDTSD-GSADVYSYSKSKGLFAGV 78 (126)
T ss_pred CCceeEEEEEeeEEeeEEEEEeCHHHHHHHhh-CCEEEeeeeEEEecCcCccccccccccc-ccCceEEEEecCeEEEEE
Confidence 57899999999999999999999999999996 8999999999999999999999886654 347999999999999999
Q ss_pred eeeeeEEEecchHhhhccCCCCCChhhhccCCCCCChHHHHHHHHHHHH
Q 009736 473 SLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDL 521 (527)
Q Consensus 473 Sl~G~~i~~~~d~N~~~YG~~~vt~~dIL~g~v~~p~~a~~L~~~L~~~ 521 (527)
||+|++|++|++.|++|||+ .++++|||.|++++|++|++||++|+++
T Consensus 79 sl~G~~i~~~~~~N~~~YG~-~v~~~~IL~g~~~~p~~a~~L~~~L~~a 126 (126)
T PF04366_consen 79 SLEGSKISVRDDANARFYGR-DVTPEDILNGKVPPPPEAQPLYEALNKA 126 (126)
T ss_pred EEcceEEEEChHHHHHHhCC-CCCHHHHhCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999998 8999999999999999999999999874
No 4
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=295.41 Aligned_cols=216 Identities=36% Similarity=0.593 Sum_probs=200.9
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhhccC-cCCCCCCchhHHHhhcceeEEEEEeeeeEEEEEEeeeEEEEEEcCCCCcCcc
Q 009736 310 VNFPWGQSMEYEIYKAANTIRGYSKVG-FLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPP 388 (527)
Q Consensus 310 ln~P~~~sl~~eI~KAa~~L~~~~k~~-~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~gg~~G~GvviaR~~dG~WSaP 388 (527)
.|+|++.++..|..||...+..|.+.. ..+.+..||+.+|.+|+|++|+|+.|+||++.++.|.||.++|+++|+||+|
T Consensus 3 ~~npipaSlkse~~~~~k~~~~fv~p~q~~Gs~e~ipPyvl~da~gl~~i~~lkegflfsgr~Gsgviv~~l~dGtwsap 82 (473)
T KOG1843|consen 3 INNPIPASLKSETNKAVKSLSSFVDPNQDFGSDEGIPPYVLKDAPGLVSIPVLKEGFLFSGRAGSGVIVGYLKDGTWSAP 82 (473)
T ss_pred CCCcCccCccchhcccceeeccccChhhccCCccccCcceeccCCcceEeeeecccccccccccCceeeeecCCCCcCcc
Confidence 367888999999999999999997632 2344567999999999999999999999999999999999999999999999
Q ss_pred ceEEeecceEEEEecceeEeEEEEEeCHHHHHHhhcCCCeEEccceeEEeecccccccccccccCCCcceEEEEEeccce
Q 009736 389 SAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAGLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCSKGA 468 (527)
Q Consensus 389 s~i~~~g~s~Glq~G~e~~d~Vivl~t~~al~~f~~~~~~~lGad~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~skGl 468 (527)
++|.+.+.+.|.++|++.+|+|++++++.|+++|..-+..+||++++++|||+|+++++...+..++.+++|.|++++||
T Consensus 83 sa~~~~g~g~g~~Vgveltd~V~ilNs~~av~~f~~~G~itLGgn~svsAgPLgr~aea~a~asl~~~ap~f~yskskgl 162 (473)
T KOG1843|consen 83 SAIAEAGEGAGGMVGVELTDFVIILNSALAVQSFARFGTITLGGNLSVSAGPLGRNAEAAASASLGGEAPVFLYSKSKGL 162 (473)
T ss_pred hhhhhccccchhhhHHHHHHHHHhhcchHhhhhhhhcCeeeecCcceeccCcccccchhhhhhhhcCcCccccccccccc
Confidence 99999999999999999999999999999999999878899999999999999999888776666678999999999999
Q ss_pred EEEeeeeeeEEEecchHhhhccCCCCCChhhhccCCCCCChHHHHHHHHHHHHHHhhc
Q 009736 469 FVGCSLEGSVFTTRTQENSRFYGSQSVTASDVLLGSMPIPPAAAMLYHALEDLYQKLQ 526 (527)
Q Consensus 469 f~GvSl~G~~i~~~~d~N~~~YG~~~vt~~dIL~g~v~~p~~a~~L~~~L~~~~~~~~ 526 (527)
|+|||++|+.|.++.+.|+.|||. ..++..||.|.++.|+++++|+++|+.-+.+++
T Consensus 163 fagvSvegsaI~erR~anR~~yg~-~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~ 219 (473)
T KOG1843|consen 163 FAGVSVEGSAIIERREANRKFYGI-FCRAKSILSGLVPVPFAADPLQRVLDSCAFNLE 219 (473)
T ss_pred eeeeecccceeeecchhhhhhcCc-cchhhhhhccCCCCCcccCCHHHHHhhHhhccC
Confidence 999999999999999999999999 899999999999999999999999998887763
No 5
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=99.73 E-value=8.4e-19 Score=142.12 Aligned_cols=67 Identities=48% Similarity=1.040 Sum_probs=48.1
Q ss_pred CCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeecc-ccCCCCCceeeCcchhhhhc
Q 009736 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLP-VKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP-~~~~~~~pvRVC~~C~~~L~ 279 (527)
|.|+||+++..|+.|+++|+++ +||||||.||++||+.|+.++..+| .......++|||+.|+..|+
T Consensus 1 ~~W~~d~~~~~C~~C~~~F~~~-~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 1 PHWVPDSEASNCMICGKKFSLF-RRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp --SSSGGG-SB-TTT--B-BSS-S-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCCCCCCCcCcCcCCcCCCc-eeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 7899999999999999999976 8999999999999999999999887 23466789999999999875
No 6
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=99.54 E-value=1.9e-15 Score=153.73 Aligned_cols=71 Identities=45% Similarity=0.967 Sum_probs=63.6
Q ss_pred ccCCCCCcccCCCCcccccccc-cccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 207 LDAEPPRWLADSSASACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 207 ~~~~~p~Wv~d~~~~~C~~C~~-~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
.....+.|+||++++.|+.|.+ .|+++ .||||||+||.|||..|+.++..||. ...+|+|||+.||..|..
T Consensus 155 ~~~~~~~W~PD~ea~~C~~C~~~~Ftl~-~RRHHCR~CG~ivC~~Cs~n~~~l~~--~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 155 SNNSAAVWLPDSEATECMVCGCTEFTLS-ERRHHCRNCGDIVCAPCSRNRFLLPN--LSTKPIRVCDICFEELEK 226 (288)
T ss_pred CCCcCCcccCcccceecccCCCccccHH-HHHHHHHhcchHhhhhhhcCcccccc--cCCCCceecHHHHHHHhc
Confidence 3456789999999999999999 99975 89999999999999999999988874 578899999999999865
No 8
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=99.48 E-value=1.3e-14 Score=158.73 Aligned_cols=72 Identities=28% Similarity=0.639 Sum_probs=56.8
Q ss_pred CCCCCcccCCC-Cccccccccccccc----ccccccccccCceecCCCCCCeeeccc-------cCCCCCceeeCcchhh
Q 009736 209 AEPPRWLADSS-ASACMLCGVRFHPI----MCSRHHCRFCGGIFCGECSKGRSLLPV-------KFRVSDPQRVCDVCCV 276 (527)
Q Consensus 209 ~~~p~Wv~d~~-~~~C~~C~~~F~~~----~~RrHHCR~CG~ifC~~CS~~~~~lP~-------~~~~~~pvRVC~~C~~ 276 (527)
...|.|++|++ ++.|+.|++.|+++ ..||||||+||++||+.||+++..+|. ......+.|||+.||+
T Consensus 448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd 527 (1374)
T PTZ00303 448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK 527 (1374)
T ss_pred ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence 45789999998 48899999999753 259999999999999999998865431 1122346799999997
Q ss_pred hhcc
Q 009736 277 RLQS 280 (527)
Q Consensus 277 ~L~~ 280 (527)
.++.
T Consensus 528 q~En 531 (1374)
T PTZ00303 528 EYET 531 (1374)
T ss_pred HHHh
Confidence 7654
No 9
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.7e-14 Score=158.05 Aligned_cols=70 Identities=39% Similarity=0.925 Sum_probs=63.4
Q ss_pred ccCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 207 ~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
....+|.|++ ...|..|.+.|+++ .|+||||+||+|||..|++..++|| +++..+|||||+.||+.|+..
T Consensus 155 ~~~~~pdW~D---~~~C~rCr~~F~~~-~rkHHCr~CG~vFC~qcss~s~~lP-~~Gi~~~VRVCd~C~E~l~~~ 224 (634)
T KOG1818|consen 155 DAETAPDWID---SEECLRCRVKFGLT-NRKHHCRNCGQVFCGQCSSKSLTLP-KLGIEKPVRVCDSCYELLTRA 224 (634)
T ss_pred cccCCccccc---ccccceeeeeeeec-cccccccccchhhccCccccccCcc-cccccccceehhhhHHHhhhc
Confidence 3457899998 67899999999986 7999999999999999999999998 689999999999999998764
No 10
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=99.45 E-value=1.7e-14 Score=151.92 Aligned_cols=66 Identities=44% Similarity=1.054 Sum_probs=60.9
Q ss_pred CCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCc-----chhhh
Q 009736 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCD-----VCCVR 277 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~-----~C~~~ 277 (527)
.||.|+||..+..||.|+.+|+.| +||||||+||.|||..||...++||. ++..+.+|||. .|+.+
T Consensus 891 sppawipd~~a~~cmacq~pf~af-rrrhhcrncggifcg~cs~asapip~-~gl~ka~rvcrpqsnldc~~r 961 (990)
T KOG1819|consen 891 SPPAWIPDEDAEQCMACQMPFNAF-RRRHHCRNCGGIFCGKCSCASAPIPE-HGLDKAPRVCRPQSNLDCLTR 961 (990)
T ss_pred CCcccCCCCcchhhhhccCcHHHH-HHhhhhcccCceeecccccCCCCCcc-cccccCceecCCcccccceee
Confidence 478999999999999999999986 89999999999999999999999984 68889999999 78765
No 11
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=3e-14 Score=145.37 Aligned_cols=140 Identities=28% Similarity=0.511 Sum_probs=108.2
Q ss_pred CCCcccCCCCCccc------cccCCceeEehhHHH-----HHHHhhcCcceeeeeccCCCCccccchhhhHHHHHHHHHH
Q 009736 125 DGGYFPEVDMGWSQ------YLKEDKELTMWDVVV-----EMLLAARGKVHALAKGDIHGCNFSWMSSHLLEQAWQEMAQ 193 (527)
Q Consensus 125 ~~g~~~~~~~~w~~------~~~~~~~l~~~dv~~-----~~l~~~~~Kv~al~~~d~~~~~~S~~~~~~le~~~~~~~~ 193 (527)
+++.++--.+.|.. ....+..++|||+.. .+++.|.+||.++......++++|.-.+..+ ..|. |.
T Consensus 194 ~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i-~~w~-mn- 270 (404)
T KOG1409|consen 194 NGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI-VVWN-MN- 270 (404)
T ss_pred cCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE-EEEe-cc-
Confidence 34444444555632 113678999999997 4779999999999999999999998776554 2332 22
Q ss_pred HHHhhccCCccccccCCCCCcccCCCCcccccccccccc----------cccccccccccCceecCCCCCCeeeccccCC
Q 009736 194 TLTEANFGNVSELLDAEPPRWLADSSASACMLCGVRFHP----------IMCSRHHCRFCGGIFCGECSKGRSLLPVKFR 263 (527)
Q Consensus 194 ~l~~~~~~~~~~~~~~~~p~Wv~d~~~~~C~~C~~~F~~----------~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~ 263 (527)
....+.|.|+. ..+|+.|+++|.. +..|.||||.||+.||..|++++...|.. +
T Consensus 271 ------------~~r~etpewl~---s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m-g 334 (404)
T KOG1409|consen 271 ------------VKRVETPEWLD---SDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM-G 334 (404)
T ss_pred ------------ceeecCccccc---cchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc-c
Confidence 23567899998 5799999999973 23689999999999999999999999864 6
Q ss_pred CCCceeeCcchhhhhccchh
Q 009736 264 VSDPQRVCDVCCVRLQSVQP 283 (527)
Q Consensus 264 ~~~pvRVC~~C~~~L~~~~~ 283 (527)
..-.+|+|+.||..|....+
T Consensus 335 ~e~~vR~~~~c~~~i~~~~~ 354 (404)
T KOG1409|consen 335 FEFSVRVCDSCYPTIKDEER 354 (404)
T ss_pred ceeEEEEecccchhhhcCCC
Confidence 77899999999999876543
No 12
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=99.34 E-value=9.7e-14 Score=145.17 Aligned_cols=117 Identities=33% Similarity=0.546 Sum_probs=84.4
Q ss_pred cccccCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccc------------cC---------
Q 009736 204 SELLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPV------------KF--------- 262 (527)
Q Consensus 204 ~~~~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~------------~~--------- 262 (527)
++.+++...+|++|.++..|+.|..+|++ ++||||||.||+|+|.+|+.+-. ++. ++
T Consensus 164 ~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l-~rRrHHCRLCG~VmC~~C~k~iS-le~a~~ltsss~~dt~~e~~qq~~~l 241 (505)
T KOG1842|consen 164 RKRLEQSVVPWLDDSSVQFCPECANSFGL-TRRRHHCRLCGRVMCRDCSKFIS-LEIAIGLTSSSASDTHFEPNQQKDDL 241 (505)
T ss_pred HHHHHhccccccCCCcccccccccchhhh-HHHhhhhhhcchHHHHHHHHhcC-hHHHHHHhhccCCCCCcCcccCcccc
Confidence 34567888999999999999999999996 58999999999999999997532 110 00
Q ss_pred -CCCCceeeCcchhhhhccc--------------h-----------------hhhhhcccccccCCcCCCCcccccccee
Q 009736 263 -RVSDPQRVCDVCCVRLQSV--------------Q-----------------PYLMNQVSHAAQLPTRDLTDLSTLRSWV 310 (527)
Q Consensus 263 -~~~~pvRVC~~C~~~L~~~--------------~-----------------~~l~~~~S~a~~~p~~dlsd~~~lR~wl 310 (527)
....+.|+|.+|...|-.. | -|+..-.|......++++.++..+|.
T Consensus 242 H~~~~~iRlC~hCl~~L~~R~~~~d~r~~~p~ivq~Ye~mq~~~k~v~~~~p~Y~~~l~SL~~get~~tlk~~~dLR~-- 319 (505)
T KOG1842|consen 242 HQHPQPIRLCMHCLDNLFRRKLQQDEREPSPGIVQHYEHLQVFRKEVDNLLPLYEDSLNSLKEGETTYTLKHAKDLRK-- 319 (505)
T ss_pred cCChhHhHHHHHHHHHHHHHHHhhhhccCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHhhHHHHHH--
Confidence 1234689999999887431 1 12222234445556677777777775
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhc
Q 009736 311 NFPWGQSMEYEIYKAANTIRGYSK 334 (527)
Q Consensus 311 n~P~~~sl~~eI~KAa~~L~~~~k 334 (527)
++.+.++.++.+++
T Consensus 320 ----------k~~el~~s~D~~sK 333 (505)
T KOG1842|consen 320 ----------KFLELCESIDGTSK 333 (505)
T ss_pred ----------HHHHHHHHHHHHHH
Confidence 78888888888765
No 13
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=99.31 E-value=8.2e-13 Score=102.90 Aligned_cols=55 Identities=51% Similarity=0.994 Sum_probs=49.6
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCV 276 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~ 276 (527)
+..|+.|+++|+++ .|+||||.||++||.+|+.++..+|.. ...+|+|||+.||+
T Consensus 2 ~~~C~~C~~~F~~~-~rk~~Cr~Cg~~~C~~C~~~~~~~~~~-~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFTLT-RRRHHCRNCGRIFCSKCSSNRIPLPSM-GGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCccccCC-ccccccCcCcCCcChHHcCCeeecCcc-cCCCccEeChHHhC
Confidence 56899999999986 799999999999999999999988743 56789999999996
No 14
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=99.07 E-value=3.1e-11 Score=137.33 Aligned_cols=65 Identities=42% Similarity=0.894 Sum_probs=55.4
Q ss_pred ccCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcch
Q 009736 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVC 274 (527)
Q Consensus 207 ~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C 274 (527)
++...|.|+||+.+..||.|.++|+++ +||||||+||+|+|..|+..+..+ .|-...--|||..|
T Consensus 544 lgkkqP~wvpdse~pncm~clqkft~i-krrhhcRacgkVlcgvccnek~~l--eyl~e~~~rv~nV~ 608 (1287)
T KOG1841|consen 544 LGKKQPSWVPDSEAPNCMDCLQKFTPI-KRRHHCRACGKVLCGVCCNEKSAL--EYLSESEGRVSNVD 608 (1287)
T ss_pred cCCCCCccCccccCchHHHHHhhcccc-cccccchhccceeehhhcchhhhh--hhcCcccccccccc
Confidence 456789999999999999999999986 799999999999999999998887 34445556666655
No 15
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=98.57 E-value=9.5e-09 Score=111.34 Aligned_cols=130 Identities=20% Similarity=0.388 Sum_probs=94.2
Q ss_pred CCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccch--------
Q 009736 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQ-------- 282 (527)
Q Consensus 211 ~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~-------- 282 (527)
.|.| ++....|+.|..+|+.++.|||||+.||.++|+.|+.++..+. +..+...|||..||.......
T Consensus 408 ~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~--~~~s~ssrv~~~~~~~~~~a~~s~~~rr~ 483 (623)
T KOG4424|consen 408 APRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLS--YDNSRSSRVCMDRYLTPSGAPGSPPKRRQ 483 (623)
T ss_pred Cccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhc--ccccchhhhhhhhccCCCCCCCCchhccc
Confidence 4577 7789999999999999989999999999999999999988774 356788999999998875432
Q ss_pred hhhhhcccccccCC-------cCCCCccccccceeccCCCCCHHHHHHHHHHHHHhhhccCcCCCCCCc
Q 009736 283 PYLMNQVSHAAQLP-------TRDLTDLSTLRSWVNFPWGQSMEYEIYKAANTIRGYSKVGFLKPEKSI 344 (527)
Q Consensus 283 ~~l~~~~S~a~~~p-------~~dlsd~~~lR~wln~P~~~sl~~eI~KAa~~L~~~~k~~~~~pd~~i 344 (527)
+.+......+.+.. .+......+.-.|++.|...++....+-+.+.+++-..+...+.+..+
T Consensus 484 ~~l~~~~a~~s~~~~~~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~ 552 (623)
T KOG4424|consen 484 SILEIELATVSKENVICSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTI 552 (623)
T ss_pred ccccccccccCCCceehhhHHHHhhcCccceeeeeeccCCCCccccccCCccccccccccccCccccCC
Confidence 22222222222221 122244567778999999999988888888887766554444444333
No 16
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=97.12 E-value=4.5e-05 Score=83.67 Aligned_cols=65 Identities=28% Similarity=0.665 Sum_probs=51.0
Q ss_pred CCcccCC----CCccccccc-ccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 212 PRWLADS----SASACMLCG-VRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 212 p~Wv~d~----~~~~C~~C~-~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
..|+||. .-.-|+.|. ..|.-+ .||||||.||...|..|+..+...- .-++..|.++|+.|+..-
T Consensus 314 ~nfq~darrafs~a~~~a~~R~~~kd~-~Rk~~~~g~Ga~e~aa~ea~kgiqE-d~gse~~Adg~Dq~psvs 383 (1141)
T KOG1811|consen 314 HNFQPDARRAFSEAICMACCREHFKDF-NRKHHCRGCGALECAACEAKKGIQE-DCGSENPADGCDQCPSVS 383 (1141)
T ss_pred hhcChhhhhhhhhhHHHHHHHHHHHHH-HHhhhccccchHHHhHHHHhhhhhh-cccccCcccccccccchh
Confidence 3699987 446788655 457655 7999999999999999998876653 345678999999999653
No 17
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=96.91 E-value=0.00052 Score=81.96 Aligned_cols=49 Identities=35% Similarity=0.931 Sum_probs=39.0
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
....|..|. +.+ .|+||||.||++||.+|... . ....|||+.|+.....
T Consensus 4 s~~~~~~~~---t~~-~~~~~~~~~g~~~~~~~~~~------~---~~~i~~~~~~~~~~~~ 52 (1598)
T KOG0230|consen 4 SSNVCYDCD---TSV-NRRHHCRVCGRVFCSKCQDS------P---ETSIRVCNECRGQWEQ 52 (1598)
T ss_pred cccchhccc---ccc-ccCCCCcccCceeccccCCC------C---ccceeehhhhhhhccc
Confidence 467888898 443 69999999999999999832 2 2279999999987653
No 18
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=96.59 E-value=0.0013 Score=59.12 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=42.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
...|..|.++|+++..+.+.|..|++-||.+|+.+ ....+.-+|..|+..-
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--------~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--------SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--------TSSSCCEEEHHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc--------CCCCCCEEChhhHHHH
Confidence 46899999999988789999999999999999865 2356889999999753
No 19
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=95.66 E-value=0.0042 Score=74.61 Aligned_cols=34 Identities=44% Similarity=1.142 Sum_probs=32.7
Q ss_pred ccCCCCcccccccccccccccccccccccCceecCCC
Q 009736 215 LADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
++|.....|..|.+.|..+ +|+||| ||+|||.+|
T Consensus 92 m~d~s~~ec~~~~~~~~t~-Rr~~~~--~gqi~~ss~ 125 (1598)
T KOG0230|consen 92 MPDSSSKECYDCEQKFETF-RRKHHC--CGQIFCSSC 125 (1598)
T ss_pred CCccccchhhhhccchhhh-hccccc--CccccCCcc
Confidence 8999999999999999986 899999 999999999
No 20
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.51 E-value=0.14 Score=48.16 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=78.2
Q ss_pred eeEEEEEeeeeEEEEEEeeeEEEEEEcCCCCcCccceEEeecceEEEEecceeEeEEEEEeCHHHHHHhhcCCCeEEccc
Q 009736 354 GLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGNAHISIGAG 433 (527)
Q Consensus 354 Glai~~v~K~G~~~gg~~G~GvviaR~~dG~WSaPs~i~~~g~s~Glq~G~e~~d~Vivl~t~~al~~f~~~~~~~lGad 433 (527)
|++.-.=.-++|++|.++|.|.|.-|... +--+-..|.|+||.+|++...+.+++-+-..++.+-++ |- |.+
T Consensus 39 gYI~G~E~sGA~~~GlrYGeG~L~~k~~g-----~~~vyWqGPSiG~D~G~~~~r~~~LVYnL~~~~~iy~R--f~-gv~ 110 (160)
T PF06577_consen 39 GYILGEEASGAFVVGLRYGEGTLYTKNAG-----QHKVYWQGPSIGFDFGGNGSRVFMLVYNLPDPDDIYQR--FP-GVE 110 (160)
T ss_pred eEEEeeeccccEEEEEEecccEEEEcCCC-----eeEEEEeCCceeEeecCCceEEEEEEEcCCCHHHHhhh--CC-Ccc
Confidence 55555566677899999999999988643 22345667789999999999998888887777776632 21 122
Q ss_pred eeE-EeecccccccccccccCCCcceEEEEEec-cceEEEeeeeeeEEEecchHh
Q 009736 434 LSA-AVGTVGRVVEAGVRAGDGGYAACYTYSCS-KGAFVGCSLEGSVFTTRTQEN 486 (527)
Q Consensus 434 ~s~-aaGp~G~~~~a~~~~~~~~~a~v~~Ys~s-kGlf~GvSl~G~~i~~~~d~N 486 (527)
-|+ -+|-+|.+.-. .++ -+.+=.++ .|+-.|+++.--+++..+..|
T Consensus 111 GsAYlvgG~G~~~l~---~~~----ivl~PIR~GvG~RLG~nvGYl~fT~~~twn 158 (160)
T PF06577_consen 111 GSAYLVGGVGMTYLR---NGD----IVLAPIRTGVGARLGANVGYLKFTRKPTWN 158 (160)
T ss_pred ceEEEEccceEEEEE---eCC----EEEEEeecCcceeeeeeeeeEeecCCCCcC
Confidence 222 12334433321 111 13333334 899999999999999887766
No 21
>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]
Probab=91.19 E-value=0.12 Score=60.96 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=47.6
Q ss_pred CCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 209 ~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...+.|.+|..+.+|+.|.++|.+. .+||||| |+++ ..+...+..|+|..|...+.+
T Consensus 646 e~ksVw~aDg~aPng~la~t~~~~~-~e~~hsr--~~ls------------~~~~s~~~~~~~n~t~s~~rn 702 (1287)
T KOG1841|consen 646 EVKSVWFADGIAPNGELAETRFTFT-GERHHSR--GKLS------------LLYSSRKEARPCNITHSVLRN 702 (1287)
T ss_pred eecceeccCCcCCCceecccceeee-ccccccc--cccc------------ccccccccCCCCcccCccchh
Confidence 4567999999999999999999975 7999999 8876 133456788999999988755
No 22
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=89.82 E-value=0.066 Score=55.40 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=50.5
Q ss_pred CCcccCCCCcccccccccccccccccccccccCceecCCCCC-Ceeeccc--c--CCCCCceeeCcchhhh
Q 009736 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSK-GRSLLPV--K--FRVSDPQRVCDVCCVR 277 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~-~~~~lP~--~--~~~~~pvRVC~~C~~~ 277 (527)
+.|+-+.++..|..|...|.+. .|+|||+.||+++|..|+. .....+. + +-.....+.|..|...
T Consensus 12 ~~~~~~~e~~s~~~~~~e~~~~-~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~ 81 (288)
T KOG1729|consen 12 VDWQANSEANSCRNCKVEFCFG-RRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN 81 (288)
T ss_pred HHHHHhccchhhhhhcccchhh-hccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence 4789999999999999999975 7899999999999999987 2221111 1 2345677899999876
No 23
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=0.016 Score=61.64 Aligned_cols=66 Identities=26% Similarity=0.541 Sum_probs=55.1
Q ss_pred CCcccCCCCcccccccccccccccccccccc--cCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRF--CGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~--CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
..|.-+.++..|..|-.+|..+ +-.-||-+ |++|||-.|++- .+|. .....|..||.-|+..+.+-
T Consensus 460 le~ql~~~ve~c~~~~aS~~sl-k~e~erl~qq~eqi~~~~~~Ka--tvp~-l~~e~~akv~rlq~eL~~se 527 (542)
T KOG0993|consen 460 LEWQLDDDVEQCSNCDASFASL-KVEPERLHQQCEQIFCMNCLKA--TVPS-LPNERPAKVCRLQHELLNSE 527 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhHHHh--hccc-ccccchHHHHHHHHHHhhhc
Confidence 4688888899999999999986 67888887 999999999975 4553 35678999999999988763
No 24
>COG3874 Uncharacterized conserved protein [Function unknown]
Probab=87.42 E-value=1.7 Score=39.78 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhccCcCCCCCCchhHHHhhcceeEEEEEeeeeEEEEEEeeeE
Q 009736 318 MEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTG 374 (527)
Q Consensus 318 l~~eI~KAa~~L~~~~k~~~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~gg~~G~G 374 (527)
.+.-++-+.+-|+.|..+...-- +-++ +.|-.|+|+.|+||.|++.+|.|
T Consensus 6 Iee~mkt~~e~Lk~m~dv~TiVG------dPIe-~dgs~iiPvsKv~fGFgaGGgEg 55 (138)
T COG3874 6 IEELMKTTMENLKKMLDVNTIVG------DPIE-PDGSTIIPVSKVGFGFGAGGGEG 55 (138)
T ss_pred hhHHHHHHHHHHHHHhhhccccc------Cccc-CCCcEEEEEEEEeeeeccCCccc
Confidence 34445666667777754322211 1234 67889999999999999999998
No 25
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.87 E-value=1.3 Score=39.69 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=30.2
Q ss_pred CcccCCCCccccccccccccc---------ccccccccccCceecCCCCC
Q 009736 213 RWLADSSASACMLCGVRFHPI---------MCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 213 ~Wv~d~~~~~C~~C~~~F~~~---------~~RrHHCR~CG~ifC~~CS~ 253 (527)
.|........|..|+++|... ...|..|..|.++||-+|=.
T Consensus 48 ~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~ 97 (112)
T TIGR00622 48 PLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV 97 (112)
T ss_pred cccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccch
Confidence 344344456799999999731 23478899999999999954
No 26
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=78.21 E-value=1.1 Score=42.51 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=19.4
Q ss_pred ccccccccccc-----------cccccccccccCcee
Q 009736 222 ACMLCGVRFHP-----------IMCSRHHCRFCGGIF 247 (527)
Q Consensus 222 ~C~~C~~~F~~-----------~~~RrHHCR~CG~if 247 (527)
.|+.|+.+++- ..+|+++|++||.-|
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f 38 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF 38 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence 59999988831 125679999999876
No 27
>COG5400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.27 E-value=11 Score=36.20 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred eeEEEEEeeeeEEEEEEeeeEEEEEEcCCCCcCccceEEeecceEEEEecceeEeEEEEEeCHHHHHHhhcC-CCeEEcc
Q 009736 354 GLAILSVAKVGVMVTYNIGTGLVIARRNDGSWSPPSAISSFGMGWGAQAGGELTDFIIVLRTNDAVKTFTGN-AHISIGA 432 (527)
Q Consensus 354 Glai~~v~K~G~~~gg~~G~GvviaR~~dG~WSaPs~i~~~g~s~Glq~G~e~~d~Vivl~t~~al~~f~~~-~~~~lGa 432 (527)
|++.=--..++||.|..+|.|.+..|...-. + +-.-|-++|+..|+|-+..+++.-|-..++++.++ +.+. +
T Consensus 84 GYilGeEGSGAfIaGltYGeG~LytKn~g~h---~--vFWQGPslGwD~GGqgsRvmmLvYnL~~v~aly~Ry~GV~--G 156 (205)
T COG5400 84 GYILGEEGSGAFIAGLTYGEGTLYTKNAGDH---K--VFWQGPSLGWDWGGQGSRVMMLVYNLDDVDALYRRYGGVA--G 156 (205)
T ss_pred ceEeccccccceEeeeeeccceEEecCCCCc---c--eEeeCCccccccCCCceEEEEEEecCCCHHHHHhhcCCcc--c
Confidence 4443345667789999999999998864210 1 22335568999999999999999998888876642 2222 2
Q ss_pred ceeEEeecccccccccccccCCCcceEEEEEec-cceEEEeeeeeeEEEecchHh
Q 009736 433 GLSAAVGTVGRVVEAGVRAGDGGYAACYTYSCS-KGAFVGCSLEGSVFTTRTQEN 486 (527)
Q Consensus 433 d~s~aaGp~G~~~~a~~~~~~~~~a~v~~Ys~s-kGlf~GvSl~G~~i~~~~d~N 486 (527)
.|=+.+ -+|-+.--+-+ -+++-.++ -|+-.|+.+.=-+++..+..|
T Consensus 157 SAyvVa-GvG~n~lk~~~-------v~lvPIRtGiGaRLGvNvGYLklt~q~twn 203 (205)
T COG5400 157 SAYVVA-GVGFNVLKAEN-------VTLVPIRTGIGARLGVNVGYLKLTQQPTWN 203 (205)
T ss_pred cEEEEe-ecceEEEecCc-------eEEEEeeeccceeecceeeeeeeccccccC
Confidence 222222 24433322111 12233334 688888888777777666554
No 28
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=76.27 E-value=1.6 Score=38.90 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=24.9
Q ss_pred CCcccCCCCcccccccccccccccccccccccCcee
Q 009736 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
|.|-- -..|+.|+++|-=|.++--+|..||.+|
T Consensus 4 pelGt---KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 4 PELGT---KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCC---cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 45544 4689999999987765666788888876
No 29
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.00 E-value=0.34 Score=46.66 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=36.1
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
.-.|.+|-.+|+- +-----+||+|||..|.+.- .+..++|-.|..+|+..
T Consensus 131 ~~~CPiCl~~~se---k~~vsTkCGHvFC~~Cik~a---------lk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 131 TYKCPICLDSVSE---KVPVSTKCGHVFCSQCIKDA---------LKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccCCCceecchhh---ccccccccchhHHHHHHHHH---------HHhCCCCCCcccccchh
Confidence 4678888887762 22244689999999998643 23578899999877653
No 30
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.21 E-value=2.1 Score=39.22 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCcccCCCCcccccccccccccccccccccccCcee
Q 009736 212 PRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
|.|-- -..|+.|+++|--|.++-.+|..||..+
T Consensus 4 ~elGt---Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 4 PDLGT---KRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred hhhCc---cccCCCcCccccccCCCCccCCCcCCcc
Confidence 45544 4689999999987767778888888875
No 31
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=71.10 E-value=1.3 Score=46.78 Aligned_cols=35 Identities=26% Similarity=0.636 Sum_probs=26.6
Q ss_pred CCCCCcccCCCCc-----ccccccccccccccccccccccCce
Q 009736 209 AEPPRWLADSSAS-----ACMLCGVRFHPIMCSRHHCRFCGGI 246 (527)
Q Consensus 209 ~~~p~Wv~d~~~~-----~C~~C~~~F~~~~~RrHHCR~CG~i 246 (527)
..|+.|.|....+ .|..|+. |-. -|-||||.|.+.
T Consensus 75 ~vp~~wkPe~~~D~~~lqfCk~Cqg-YKa--pRSHHCrkCnrC 114 (414)
T KOG1314|consen 75 FVPLGWKPENPKDEMFLQFCKKCQG-YKA--PRSHHCRKCNRC 114 (414)
T ss_pred CCCCCCCCCCChhHHHHHHHhhccC-cCC--CccccchHHHHH
Confidence 4577899976665 6888876 443 599999999875
No 32
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=69.31 E-value=1.1 Score=34.80 Aligned_cols=31 Identities=32% Similarity=0.674 Sum_probs=19.0
Q ss_pred ccccccccccccc-----cccccccccCceecCCCC
Q 009736 222 ACMLCGVRFHPIM-----CSRHHCRFCGGIFCGECS 252 (527)
Q Consensus 222 ~C~~C~~~F~~~~-----~RrHHCR~CG~ifC~~CS 252 (527)
.|..|.++|.... ..+..|..|+++||-.|=
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD 36 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD 36 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence 4889999998531 257999999999999984
No 33
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.52 E-value=0.81 Score=47.20 Aligned_cols=49 Identities=33% Similarity=0.727 Sum_probs=40.5
Q ss_pred CCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
.....|..|+..|..+ .+||-|--|-+-||..||. +.+ ..|.|..|...
T Consensus 42 ~~~p~ckacg~~f~~~-~~k~~c~dckk~fc~tcs~--v~~--------~lr~c~~c~r~ 90 (350)
T KOG4275|consen 42 SQAPHCKACGEEFEDA-QSKSDCEDCKKEFCATCSR--VSI--------SLRTCTSCRRV 90 (350)
T ss_pred cccchhhhhchhHhhh-hhhhhhhhhhHHHHHHHHH--hcc--------cchhhhHHHHH
Confidence 3456899999999975 7999999999999999993 222 47889999864
No 34
>PRK00420 hypothetical protein; Validated
Probab=62.41 E-value=4.9 Score=36.11 Aligned_cols=26 Identities=19% Similarity=0.534 Sum_probs=15.7
Q ss_pred CcccccccccccccccccccccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
...|+.|+.+|.-+...+.-|.+||.
T Consensus 23 ~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 23 SKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred cCCCCCCCCcceecCCCceECCCCCC
Confidence 47899999988644233333444444
No 35
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=60.78 E-value=5 Score=28.66 Aligned_cols=26 Identities=23% Similarity=0.662 Sum_probs=18.1
Q ss_pred cccccccccccc------ccccccccccCcee
Q 009736 222 ACMLCGVRFHPI------MCSRHHCRFCGGIF 247 (527)
Q Consensus 222 ~C~~C~~~F~~~------~~RrHHCR~CG~if 247 (527)
.|..|++.|.+= ..++-.|.+||.+|
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 688899888731 13567788888765
No 36
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=57.90 E-value=6.9 Score=30.11 Aligned_cols=28 Identities=32% Similarity=0.574 Sum_probs=19.1
Q ss_pred CcccccccccccccccccccccccCcee
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
...|+.|+..|-..-..+.+|..||...
T Consensus 20 ~~fCP~Cg~~~m~~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMAEHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchheccCCcEECCCcCCEE
Confidence 4579999886433334578888888764
No 37
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=57.32 E-value=6.5 Score=28.16 Aligned_cols=27 Identities=30% Similarity=0.654 Sum_probs=18.6
Q ss_pred ccccccccccccc------ccccccccccCcee
Q 009736 221 SACMLCGVRFHPI------MCSRHHCRFCGGIF 247 (527)
Q Consensus 221 ~~C~~C~~~F~~~------~~RrHHCR~CG~if 247 (527)
..|+.|+..|.+- ..++..|-.|+.+|
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence 3688999988742 13467787887775
No 38
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=56.57 E-value=2.5 Score=41.75 Aligned_cols=34 Identities=35% Similarity=0.779 Sum_probs=24.7
Q ss_pred cCCCCccccccccccccc-----------ccccccccccCceecC
Q 009736 216 ADSSASACMLCGVRFHPI-----------MCSRHHCRFCGGIFCG 249 (527)
Q Consensus 216 ~d~~~~~C~~C~~~F~~~-----------~~RrHHCR~CG~ifC~ 249 (527)
+|...-.|..|++.|++- -.+||-|+.||+-|=+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfnd 157 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFND 157 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccc
Confidence 345577899999999841 1358889999988744
No 39
>PF12773 DZR: Double zinc ribbon
Probab=56.44 E-value=7.7 Score=29.06 Aligned_cols=27 Identities=33% Similarity=0.679 Sum_probs=17.1
Q ss_pred CCcccccccccccccccccccccccCc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
++..|..|+.++.........|..||.
T Consensus 11 ~~~fC~~CG~~l~~~~~~~~~C~~Cg~ 37 (50)
T PF12773_consen 11 DAKFCPHCGTPLPPPDQSKKICPNCGA 37 (50)
T ss_pred cccCChhhcCChhhccCCCCCCcCCcC
Confidence 367788888877621234566777766
No 40
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.87 E-value=1.4 Score=50.71 Aligned_cols=45 Identities=31% Similarity=0.733 Sum_probs=32.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
.-.|+.|+..+-- --=-.||++||..|...+. ...+|-|..|-.-
T Consensus 643 ~LkCs~Cn~R~Kd-----~vI~kC~H~FC~~Cvq~r~--------etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-----AVITKCGHVFCEECVQTRY--------ETRQRKCPKCNAA 687 (698)
T ss_pred ceeCCCccCchhh-----HHHHhcchHHHHHHHHHHH--------HHhcCCCCCCCCC
Confidence 4579999875531 1124799999999998652 3468999999754
No 41
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=55.00 E-value=7.3 Score=28.34 Aligned_cols=26 Identities=38% Similarity=1.100 Sum_probs=19.0
Q ss_pred cccccccccccccccccccccCceecCCC
Q 009736 223 CMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 223 C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
|..|++.-.+ ....|+.|+++||...
T Consensus 1 C~~C~~~~~l---~~f~C~~C~~~FC~~H 26 (39)
T smart00154 1 CHFCRKKVGL---TGFKCRHCGNLFCGEH 26 (39)
T ss_pred CcccCCcccc---cCeECCccCCcccccc
Confidence 5668876553 2578999999998754
No 42
>PHA02768 hypothetical protein; Provisional
Probab=53.93 E-value=5.4 Score=31.44 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=18.1
Q ss_pred cccccccccccccc-----cc----cccccccCcee
Q 009736 221 SACMLCGVRFHPIM-----CS----RHHCRFCGGIF 247 (527)
Q Consensus 221 ~~C~~C~~~F~~~~-----~R----rHHCR~CG~if 247 (527)
-.|..|++.|+... .| .+.|-.||++|
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f 41 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS 41 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence 36999999998421 13 34477777765
No 43
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.23 E-value=3.8 Score=45.35 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=38.9
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
-..|++|-.++.+- .|- +||+|||..|.-+....+ ..+.-+-|.-|+..+..
T Consensus 186 ~~~CPICL~~~~~p-~~t----~CGHiFC~~CiLqy~~~s----~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP-VRT----NCGHIFCGPCILQYWNYS----AIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc-ccc----ccCceeeHHHHHHHHhhh----cccCCccCCchhhhccc
Confidence 36899999988753 232 499999999987655543 34567889999998765
No 44
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=52.85 E-value=11 Score=28.95 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=20.1
Q ss_pred ccccc--ccccccccccc---cccccccCceecCCCCCC
Q 009736 221 SACML--CGVRFHPIMCS---RHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 221 ~~C~~--C~~~F~~~~~R---rHHCR~CG~ifC~~CS~~ 254 (527)
..|+. |...|..-... .-.|..||..||..|-..
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~ 57 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEP 57 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSE
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCcc
Confidence 47866 98877643211 257999999999999763
No 45
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.31 E-value=4.9 Score=41.54 Aligned_cols=48 Identities=27% Similarity=0.561 Sum_probs=32.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
...|..|=. .++---|-.||+|||++|-..+.. .++. |.-|-...+..
T Consensus 239 ~~kC~LCLe-----~~~~pSaTpCGHiFCWsCI~~w~~-------ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLE-----NRSNPSATPCGHIFCWSCILEWCS-------EKAE--CPLCREKFQPS 286 (293)
T ss_pred CCceEEEec-----CCCCCCcCcCcchHHHHHHHHHHc-------cccC--CCcccccCCCc
Confidence 467888855 123345999999999999765432 1222 88888776553
No 46
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.55 E-value=13 Score=29.70 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.8
Q ss_pred Ccccccccccccc-cccccccccccCcee
Q 009736 220 ASACMLCGVRFHP-IMCSRHHCRFCGGIF 247 (527)
Q Consensus 220 ~~~C~~C~~~F~~-~~~RrHHCR~CG~if 247 (527)
+..|+.|+..-.. ...|.++|..||..+
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEE
Confidence 6789999986654 346788999999874
No 47
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=49.35 E-value=9.7 Score=35.50 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=20.8
Q ss_pred cCCCCcccccccccccccccccccccccCcee
Q 009736 216 ADSSASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 216 ~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
.......|..|...=. .|-|||+.|++.+
T Consensus 44 ~~~~~~~C~~C~~~kp---~Rs~HC~~C~~CV 72 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKP---PRSHHCRVCNRCV 72 (174)
T ss_pred cCCCCEECcccCCcCC---Ccceecccccccc
Confidence 3344678999987532 4999999998753
No 48
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.39 E-value=17 Score=33.73 Aligned_cols=70 Identities=26% Similarity=0.628 Sum_probs=47.3
Q ss_pred Ccccccccc-cccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh---ccchhhhhhcccccccC
Q 009736 220 ASACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL---QSVQPYLMNQVSHAAQL 295 (527)
Q Consensus 220 ~~~C~~C~~-~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L---~~~~~~l~~~~S~a~~~ 295 (527)
...|.+|.+ +|.- -=-|.|..|.--||..|--. +.+ .+++-.-||+.|-... ......+.+.-|+..+.
T Consensus 65 datC~IC~KTKFAD--G~GH~C~YCq~r~CARCGGr-v~l----rsNKv~wvcnlc~k~q~il~ksg~wf~~sgs~~~~~ 137 (169)
T KOG3799|consen 65 DATCGICHKTKFAD--GCGHNCSYCQTRFCARCGGR-VSL----RSNKVMWVCNLCRKQQEILTKSGAWFYNSGSNTPQQ 137 (169)
T ss_pred Ccchhhhhhccccc--ccCcccchhhhhHHHhcCCe-eee----ccCceEEeccCCcHHHHHHHhcchHHHhcCCCCCCC
Confidence 468999987 4542 24688999999999999853 444 3567778999998643 33333344555666655
Q ss_pred C
Q 009736 296 P 296 (527)
Q Consensus 296 p 296 (527)
|
T Consensus 138 p 138 (169)
T KOG3799|consen 138 P 138 (169)
T ss_pred c
Confidence 5
No 49
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=47.36 E-value=11 Score=27.93 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=16.2
Q ss_pred cccccccccccccccc--cccccccCc
Q 009736 221 SACMLCGVRFHPIMCS--RHHCRFCGG 245 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~R--rHHCR~CG~ 245 (527)
-.|..|+..|.+- .. ..+|..||.
T Consensus 4 y~C~~CG~~~~~~-~~~~~~~Cp~CG~ 29 (46)
T PRK00398 4 YKCARCGREVELD-EYGTGVRCPYCGY 29 (46)
T ss_pred EECCCCCCEEEEC-CCCCceECCCCCC
Confidence 3688899888743 22 467777775
No 50
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=46.69 E-value=12 Score=31.31 Aligned_cols=27 Identities=33% Similarity=0.904 Sum_probs=23.0
Q ss_pred CCCCccccCCCCC-------CCC-CCceeecccCC
Q 009736 83 PRKGKYFFYDSPH-------YED-TGVWIPVSVPP 109 (527)
Q Consensus 83 ~~~~~~~~~~~~~-------~~~-~~~W~~~~~~~ 109 (527)
.+-|+||+.|.|+ ||- ||..|-|++|+
T Consensus 14 P~SG~Yy~vd~P~Qp~~k~lfDPETGqYVeV~iP~ 48 (75)
T PF15232_consen 14 PESGQYYVVDAPVQPKTKTLFDPETGQYVEVLIPS 48 (75)
T ss_pred CCCCCEEEEecCCCcceeeeecCCCCcEEEEeCCC
Confidence 3568999999997 554 99999999998
No 51
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=45.60 E-value=4.5 Score=29.73 Aligned_cols=32 Identities=31% Similarity=0.710 Sum_probs=23.4
Q ss_pred ccccccccccccccccccccccCceecCCCCCCe
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~ 255 (527)
.|..|...|+. .++-.=-.||.+||..|....
T Consensus 1 ~C~~C~~~~~~--~~~~~l~~CgH~~C~~C~~~~ 32 (44)
T PF14634_consen 1 HCNICFEKYSE--ERRPRLTSCGHIFCEKCLKKL 32 (44)
T ss_pred CCcCcCccccC--CCCeEEcccCCHHHHHHHHhh
Confidence 47888888842 344445689999999998754
No 52
>TIGR02874 spore_ytfJ sporulation protein YtfJ. Members of this protein family, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if and only if the species is capable of endospore formation. YtfJ was confirmed in spores of Bacillus subtilis; it appears to be expressed in the forespore under control of SigF (see PubMed:12480901).
Probab=45.37 E-value=83 Score=28.91 Aligned_cols=53 Identities=13% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHhhhccCcCCCCCCchhHHHhhcceeEEEEEeeeeEEEEEEeeeE
Q 009736 316 QSMEYEIYKAANTIRGYSKVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMVTYNIGTG 374 (527)
Q Consensus 316 ~sl~~eI~KAa~~L~~~~k~~~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~gg~~G~G 374 (527)
++.+.-+..+-+-|+.|......-- +-++-.-|-.|+|+.+++|.+|+.+|.+
T Consensus 2 hpie~lm~t~~e~ik~~i~v~tVvG------dPI~~~dgt~IIPvs~VsfGfgaGg~~~ 54 (125)
T TIGR02874 2 HPIENLMKTTMENIKEMIDVNTIVG------DPVETPDGSVIIPISKVSFGFAAGGSEF 54 (125)
T ss_pred CcHHHHHHHHHHHHHHheeeceEEe------cCEEcCCCeEEEEEEEEEEeeeeccCcc
Confidence 3445556777778888865321111 1133345788999999999998877764
No 53
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=44.97 E-value=4.1 Score=31.54 Aligned_cols=45 Identities=22% Similarity=0.589 Sum_probs=34.4
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
-.|-.|+..|.. ..-..|-.||+--|++|-+. ..-.|+.|-..++
T Consensus 8 y~CDLCn~~~p~--~~LRQCvlCGRWaC~sCW~d------------eYY~CksC~Gii~ 52 (57)
T PF14445_consen 8 YSCDLCNSSHPI--SELRQCVLCGRWACNSCWQD------------EYYTCKSCNGIIN 52 (57)
T ss_pred HhHHhhcccCcH--HHHHHHhhhchhhhhhhhhh------------hHhHHHhhhchhh
Confidence 368999999984 46778999999999999753 2446777776543
No 54
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=43.47 E-value=15 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=15.0
Q ss_pred ccccccccccccccccccccccCc
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
.|..|+..|.+-..-.-.|+.||.
T Consensus 2 ~C~~Cg~~~~~~~~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKPGDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BSTSSTSSBSSSS-
T ss_pred CCCcCCCeeEcCCCCcEECCcCCC
Confidence 478888888843333457888875
No 55
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=42.62 E-value=15 Score=28.77 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=16.6
Q ss_pred ccCCCCccccccccccccccccccc-ccccCc
Q 009736 215 LADSSASACMLCGVRFHPIMCSRHH-CRFCGG 245 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~~~~RrHH-CR~CG~ 245 (527)
+.......|..|+. + .+.|| |..||.
T Consensus 21 l~~p~l~~C~~cG~----~-~~~H~vc~~cG~ 47 (55)
T TIGR01031 21 LTAPTLVVCPNCGE----F-KLPHRVCPSCGY 47 (55)
T ss_pred ccCCcceECCCCCC----c-ccCeeECCccCe
Confidence 33344567888988 3 35555 878873
No 56
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=41.81 E-value=22 Score=27.40 Aligned_cols=34 Identities=29% Similarity=0.599 Sum_probs=23.9
Q ss_pred cccc--ccccccccc---ccccccccccCceecCCCCCC
Q 009736 221 SACM--LCGVRFHPI---MCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 221 ~~C~--~C~~~F~~~---~~RrHHCR~CG~ifC~~CS~~ 254 (527)
.-|+ .|....... ...+-.|..||..||..|...
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~ 57 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVP 57 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCc
Confidence 3466 676654432 245778999999999999753
No 57
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=41.26 E-value=11 Score=30.11 Aligned_cols=30 Identities=27% Similarity=0.675 Sum_probs=21.1
Q ss_pred cccccccCceecCCCCCCeeeccccCCCCCceeeC-cchhhhhccchh
Q 009736 237 RHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVC-DVCCVRLQSVQP 283 (527)
Q Consensus 237 rHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC-~~C~~~L~~~~~ 283 (527)
..||.+||. ++|+ ..+.| +.|-+.....|+
T Consensus 3 HkHC~~CG~-----------~Ip~------~~~fCS~~C~~~~~k~qk 33 (59)
T PF09889_consen 3 HKHCPVCGK-----------PIPP------DESFCSPKCREEYRKRQK 33 (59)
T ss_pred CCcCCcCCC-----------cCCc------chhhhCHHHHHHHHHHHH
Confidence 478999987 3442 47889 589988766443
No 58
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.32 E-value=13 Score=40.22 Aligned_cols=43 Identities=30% Similarity=0.803 Sum_probs=33.9
Q ss_pred CCCcccCCCCcccccccccccccc-cccccccccCceecCCCCCC
Q 009736 211 PPRWLADSSASACMLCGVRFHPIM-CSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 211 ~p~Wv~d~~~~~C~~C~~~F~~~~-~RrHHCR~CG~ifC~~CS~~ 254 (527)
...|+..+ +..|+.|.......- .-|+||-.||.-||.-|+.-
T Consensus 360 sekwl~~N-~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 360 SEKWLESN-SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HHHHHHhc-CCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 34788654 789999999766432 45899999999999999863
No 59
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.24 E-value=7.9 Score=40.62 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=30.8
Q ss_pred ccccccccc--ccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 221 SACMLCGVR--FHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 221 ~~C~~C~~~--F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
..|+.|... ++.-++=-.+ .||+.||.+|....... ....|..|...|..
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~--------~~~~CP~C~~~lrk 55 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVR--------GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcC--------CCCCCCCCCCccch
Confidence 479999984 3321111233 79999999998754221 12368888765543
No 60
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=38.55 E-value=14 Score=38.71 Aligned_cols=41 Identities=22% Similarity=0.652 Sum_probs=31.4
Q ss_pred CcccCCCCcccccccccccc---------cccccccccccCceecCCCCC
Q 009736 213 RWLADSSASACMLCGVRFHP---------IMCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 213 ~Wv~d~~~~~C~~C~~~F~~---------~~~RrHHCR~CG~ifC~~CS~ 253 (527)
.|-..-.++.|..|+-+|-. +...|..|..|-.-||..|-.
T Consensus 355 p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv 404 (421)
T COG5151 355 PEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV 404 (421)
T ss_pred cCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence 45555557789999998852 235789999999999999953
No 61
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=38.40 E-value=18 Score=27.12 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=14.2
Q ss_pred ccccccccccccccccccccccC
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCG 244 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG 244 (527)
.|..|+..|..-..-.-.|+.||
T Consensus 4 ~C~~Cg~~~~~~~~~~irC~~CG 26 (44)
T smart00659 4 ICGECGRENEIKSKDVVRCRECG 26 (44)
T ss_pred ECCCCCCEeecCCCCceECCCCC
Confidence 58889999885322334455554
No 62
>PF15616 TerY-C: TerY-C metal binding domain
Probab=37.99 E-value=17 Score=33.55 Aligned_cols=24 Identities=38% Similarity=0.962 Sum_probs=19.7
Q ss_pred CcccccccccccccccccccccccCceecC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCG 249 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~ 249 (527)
...|+.|+..|.+.. | .||+++|-
T Consensus 77 ~PgCP~CGn~~~fa~-----C-~CGkl~Ci 100 (131)
T PF15616_consen 77 APGCPHCGNQYAFAV-----C-GCGKLFCI 100 (131)
T ss_pred CCCCCCCcChhcEEE-----e-cCCCEEEe
Confidence 368999999988653 6 79999995
No 63
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=37.35 E-value=15 Score=36.13 Aligned_cols=43 Identities=21% Similarity=0.460 Sum_probs=33.9
Q ss_pred ccccccCceecCCCCCC-eeecccc---CCCCCceeeCcchhhhhcc
Q 009736 238 HHCRFCGGIFCGECSKG-RSLLPVK---FRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 238 HHCR~CG~ifC~~CS~~-~~~lP~~---~~~~~pvRVC~~C~~~L~~ 280 (527)
+.|...|+.||..|-.+ ...||.+ .-.-++..||+..+..|..
T Consensus 1 R~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~ 47 (202)
T PF13901_consen 1 RFCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQ 47 (202)
T ss_pred CccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHH
Confidence 35899999999999887 5677753 1234688999999999876
No 64
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.32 E-value=19 Score=24.02 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=14.2
Q ss_pred ccccccccccccccccccccccCcee
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
.|+.|++.-.. --.-|.+||..|
T Consensus 2 ~CP~C~~~V~~---~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPE---SAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchh---hcCcCCCCCCCC
Confidence 47777776553 334577777665
No 65
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.15 E-value=28 Score=36.62 Aligned_cols=61 Identities=20% Similarity=0.490 Sum_probs=37.8
Q ss_pred Ccccccccccc--ccc-------ccccccccccC------ceecCCCCCCeeeccc-cCC---CCCcee--eCcchhhhh
Q 009736 220 ASACMLCGVRF--HPI-------MCSRHHCRFCG------GIFCGECSKGRSLLPV-KFR---VSDPQR--VCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F--~~~-------~~RrHHCR~CG------~ifC~~CS~~~~~lP~-~~~---~~~pvR--VC~~C~~~L 278 (527)
...|+.|+..= +.+ ..|..||-.|+ ++-|..|-+.+ .+-. ... ....+| +|+.|..-|
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~r~e~C~~C~~Yl 262 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK-HLAYLSLEHDAEKAVLKAETCDSCQGYL 262 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeEeecCCCCCcceEEeeccccccch
Confidence 46899998752 211 24678899998 45788887643 2210 011 123456 999999877
Q ss_pred ccc
Q 009736 279 QSV 281 (527)
Q Consensus 279 ~~~ 281 (527)
+.+
T Consensus 263 K~~ 265 (305)
T TIGR01562 263 KIL 265 (305)
T ss_pred hhh
Confidence 654
No 66
>PRK04136 rpl40e 50S ribosomal protein L40e; Provisional
Probab=36.85 E-value=18 Score=27.69 Aligned_cols=23 Identities=35% Similarity=0.732 Sum_probs=18.6
Q ss_pred CcccccccccccccccccccccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
...|+.|...-. .|-..||.||.
T Consensus 14 k~ICrkC~ARnp---~~A~~CRKCg~ 36 (48)
T PRK04136 14 KKICMRCNARNP---WRATKCRKCGY 36 (48)
T ss_pred ccchhcccCCCC---ccccccccCCC
Confidence 457999999776 38899999885
No 67
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=35.44 E-value=13 Score=34.56 Aligned_cols=35 Identities=26% Similarity=0.613 Sum_probs=21.8
Q ss_pred ccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc----chhhhhhc
Q 009736 238 HHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS----VQPYLMNQ 288 (527)
Q Consensus 238 HHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~----~~~~l~~~ 288 (527)
.+|+.||++|= + . -..+|..|+..... +..||..+
T Consensus 4 ~nC~~CgklF~-------------~--~-~~~iCp~C~~~~e~~f~kV~~yLr~~ 42 (137)
T TIGR03826 4 ANCPKCGRLFV-------------K--T-GRDVCPSCYEEEEREFEKVYKFLRKH 42 (137)
T ss_pred ccccccchhhh-------------h--c-CCccCHHHhHHHHHHHHHHHHHHHHC
Confidence 47888888761 1 1 23579999976543 56666543
No 69
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.27 E-value=20 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.733 Sum_probs=25.1
Q ss_pred CCcccccccccccccccccccccccCce------ecCCCCCC
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGI------FCGECSKG 254 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~i------fC~~CS~~ 254 (527)
.+..|..|+.++.. ..|..||.. ||..|-..
T Consensus 14 ~akFC~~CG~~l~~-----~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 14 NNRFCQKCGTSLTH-----KPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CCccccccCCCCCC-----CcCCCCCCCCCcccccccccCCc
Confidence 36789999998752 369999998 99999763
No 70
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=35.23 E-value=11 Score=33.34 Aligned_cols=57 Identities=26% Similarity=0.522 Sum_probs=35.8
Q ss_pred CCcccccccccccccccccccc------ccc---CceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 219 SASACMLCGVRFHPIMCSRHHC------RFC---GGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHC------R~C---G~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
....|.+|.++-. ..+..| ..| ...||..|..++...-.......+.-+|..|...-
T Consensus 6 ~g~~CHqCrqKt~---~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 6 NGKTCHQCRQKTL---DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CCCCchhhcCCCC---CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 3568999988543 122333 666 99999999887643311111235678888888754
No 71
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.18 E-value=30 Score=36.42 Aligned_cols=61 Identities=20% Similarity=0.485 Sum_probs=38.3
Q ss_pred Cccccccccc--cccc------ccccccccccC------ceecCCCCCCeeeccc-cCCCC-C--ceeeCcchhhhhccc
Q 009736 220 ASACMLCGVR--FHPI------MCSRHHCRFCG------GIFCGECSKGRSLLPV-KFRVS-D--PQRVCDVCCVRLQSV 281 (527)
Q Consensus 220 ~~~C~~C~~~--F~~~------~~RrHHCR~CG------~ifC~~CS~~~~~lP~-~~~~~-~--pvRVC~~C~~~L~~~ 281 (527)
...|+.|+.. .+.+ ..|.-||-.|+ ++-|..|-+.+ .+-. ..... . .+-+|+.|..-|+.+
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~-~l~y~~~~~~~~~~r~e~C~~C~~YlK~~ 265 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSG-KLHYWSLDSEQAAVKAESCGDCGTYLKIL 265 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCC-ceeeeeecCCCcceEeeecccccccceec
Confidence 4789999975 2321 24778999998 45788887643 2210 01111 2 345999999877654
No 72
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=33.95 E-value=27 Score=28.91 Aligned_cols=55 Identities=20% Similarity=0.499 Sum_probs=25.6
Q ss_pred ccccccccccccccccccccccCce-----ecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~i-----fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
.|+.|+.+..+- ..+.||-.|++- +|..|-..-..|-. =..---.|..|...+++
T Consensus 3 ~CP~C~~~L~~~-~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkA---CGAvdYFC~~c~gLiSK 62 (70)
T PF07191_consen 3 TCPKCQQELEWQ-GGHYHCEACQKDYKKEAFCPDCGQPLEVLKA---CGAVDYFCNHCHGLISK 62 (70)
T ss_dssp B-SSS-SBEEEE-TTEEEETTT--EEEEEEE-TTT-SB-EEEEE---TTEEEEE-TTTT-EE-T
T ss_pred cCCCCCCccEEe-CCEEECccccccceecccCCCcccHHHHHHH---hcccceeeccCCceeec
Confidence 588899987753 467788888764 56666543333210 11123456666665543
No 73
>COG1773 Rubredoxin [Energy production and conversion]
Probab=33.84 E-value=32 Score=27.19 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=23.1
Q ss_pred ccccccccCceecCCCCCCeeecccc--CCCCCceeeCcchhh
Q 009736 236 SRHHCRFCGGIFCGECSKGRSLLPVK--FRVSDPQRVCDVCCV 276 (527)
Q Consensus 236 RrHHCR~CG~ifC~~CS~~~~~lP~~--~~~~~pvRVC~~C~~ 276 (527)
+++.|+.||.|+=..=-..+..++.. |.......+|..|-.
T Consensus 2 ~~~~C~~CG~vYd~e~Gdp~~gi~pgT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 2 KRWRCSVCGYVYDPEKGDPRCGIAPGTPFEDLPDDWVCPECGV 44 (55)
T ss_pred CceEecCCceEeccccCCccCCCCCCCchhhCCCccCCCCCCC
Confidence 58899999999744322222222211 222334678888863
No 74
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=33.06 E-value=19 Score=37.83 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=16.4
Q ss_pred ccCCCCcccccccccccccccccccccccCc
Q 009736 215 LADSSASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
.++.....|..|+. .- --|-|||+.|++
T Consensus 104 ~~~g~~R~C~kC~~-iK--PdRaHHCsvC~r 131 (307)
T KOG1315|consen 104 TSDGAVRYCDKCKC-IK--PDRAHHCSVCNR 131 (307)
T ss_pred cCCCCceeeccccc-cc--CCccccchhhhh
Confidence 34455666777766 11 147777777743
No 75
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=31.83 E-value=43 Score=28.44 Aligned_cols=31 Identities=26% Similarity=0.518 Sum_probs=23.9
Q ss_pred CcccccccccccccccccccccccCceecCCCCC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~ 253 (527)
...|..|+++|.. ..-.--.||.+|-..|.+
T Consensus 78 ~~~C~vC~k~l~~---~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN---SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC---ceEEEeCCCeEEeccccc
Confidence 5679999999872 445556788999888875
No 76
>PRK04023 DNA polymerase II large subunit; Validated
Probab=31.82 E-value=31 Score=41.58 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=31.6
Q ss_pred CcccccccccccccccccccccccCce-----ecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~i-----fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|..|+.... ...|.+||.. ||..|-... ..-.|..|-..+..
T Consensus 626 ~RfCpsCG~~t~-----~frCP~CG~~Te~i~fCP~CG~~~-----------~~y~CPKCG~El~~ 675 (1121)
T PRK04023 626 RRKCPSCGKETF-----YRRCPFCGTHTEPVYRCPRCGIEV-----------EEDECEKCGREPTP 675 (1121)
T ss_pred CccCCCCCCcCC-----cccCCCCCCCCCcceeCccccCcC-----------CCCcCCCCCCCCCc
Confidence 568999999742 2579999964 999994321 11348888877654
No 77
>KOG3795 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.33 E-value=21 Score=34.54 Aligned_cols=22 Identities=41% Similarity=0.961 Sum_probs=17.0
Q ss_pred ccccccccccccccCce---ecCCCC
Q 009736 230 FHPIMCSRHHCRFCGGI---FCGECS 252 (527)
Q Consensus 230 F~~~~~RrHHCR~CG~i---fC~~CS 252 (527)
|..+ ..||.|+.||.. ||-+|.
T Consensus 9 ~d~i-eGRs~C~~C~~SRkFfCY~C~ 33 (230)
T KOG3795|consen 9 FDPI-EGRSTCPGCKSSRKFFCYDCR 33 (230)
T ss_pred cCcc-cccccCCCCCCcceEEEEeec
Confidence 4445 689999999864 888886
No 78
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=31.24 E-value=26 Score=27.69 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=13.6
Q ss_pred Cccccccccccccccccccc-ccccC
Q 009736 220 ASACMLCGVRFHPIMCSRHH-CRFCG 244 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHH-CR~CG 244 (527)
...|..|+. + .+.|| |.+||
T Consensus 27 l~~C~~CG~----~-~~~H~vC~~CG 47 (57)
T PRK12286 27 LVECPNCGE----P-KLPHRVCPSCG 47 (57)
T ss_pred ceECCCCCC----c-cCCeEECCCCC
Confidence 456888887 3 45565 77776
No 79
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=30.74 E-value=13 Score=27.04 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=23.5
Q ss_pred cccccccccccccccccccccccCceecCCCCCCee
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRS 256 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~ 256 (527)
+.|.+|...|.. ...-.--.||.+||..|....+
T Consensus 1 d~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~~~ 34 (44)
T PF13639_consen 1 DECPICLEEFED--GEKVVKLPCGHVFHRSCIKEWL 34 (44)
T ss_dssp -CETTTTCBHHT--TSCEEEETTSEEEEHHHHHHHH
T ss_pred CCCcCCChhhcC--CCeEEEccCCCeeCHHHHHHHH
Confidence 369999999964 2333333499999999976543
No 80
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=30.27 E-value=31 Score=24.31 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=6.6
Q ss_pred cccccccccc
Q 009736 222 ACMLCGVRFH 231 (527)
Q Consensus 222 ~C~~C~~~F~ 231 (527)
.|+.|++.|.
T Consensus 4 ~CP~C~~~~~ 13 (38)
T TIGR02098 4 QCPNCKTSFR 13 (38)
T ss_pred ECCCCCCEEE
Confidence 4677777665
No 81
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=30.24 E-value=31 Score=34.93 Aligned_cols=26 Identities=23% Similarity=0.594 Sum_probs=20.1
Q ss_pred CCCcccccccccccccccccccccccCcee
Q 009736 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
..+..|+.|+. ++ .|.+.|..||..+
T Consensus 307 ~tS~~C~~cg~-~~---~r~~~C~~cg~~~ 332 (364)
T COG0675 307 YTSKTCPCCGH-LS---GRLFKCPRCGFVH 332 (364)
T ss_pred CCcccccccCC-cc---ceeEECCCCCCee
Confidence 44688999999 22 5888899999875
No 82
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=30.12 E-value=23 Score=36.44 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=18.7
Q ss_pred CcccccccccccccccccccccccCcee
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
...|..|+.. . ..|-|||+.|++-+
T Consensus 113 ~~~C~~C~~~-r--PpRs~HCsvC~~CV 137 (299)
T KOG1311|consen 113 WKYCDTCQLY-R--PPRSSHCSVCNNCV 137 (299)
T ss_pred eEEcCcCccc-C--CCCcccchhhcccc
Confidence 4689999884 2 26889999987743
No 83
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=30.10 E-value=24 Score=33.35 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=7.6
Q ss_pred cccccccccCcee
Q 009736 235 CSRHHCRFCGGIF 247 (527)
Q Consensus 235 ~RrHHCR~CG~if 247 (527)
+||.+|-.||+-|
T Consensus 26 RRRReC~~C~~RF 38 (156)
T COG1327 26 RRRRECLECGERF 38 (156)
T ss_pred hhhhccccccccc
Confidence 4566666666544
No 84
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=30.07 E-value=24 Score=40.86 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=52.1
Q ss_pred cCCCCCCCCCCc-eeecccCC-------CCCCCCcccccCcccCCCcccCCCCCccccccCCceeEehhHHH----HHHH
Q 009736 90 FYDSPHYEDTGV-WIPVSVPP-------MLDSKDDEWARGFHSDGGYFPEVDMGWSQYLKEDKELTMWDVVV----EMLL 157 (527)
Q Consensus 90 ~~~~~~~~~~~~-W~~~~~~~-------~~~~~~~~~~~g~~~~~g~~~~~~~~w~~~~~~~~~l~~~dv~~----~~l~ 157 (527)
||..--||.|.. |.-...-| ..+-+|= -|+.|..|+--+ ..|+++.|||+-. +.+.
T Consensus 507 YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv----~FHPNs~Y~aTG--------SsD~tVRlWDv~~G~~VRiF~ 574 (707)
T KOG0263|consen 507 YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV----SFHPNSNYVATG--------SSDRTVRLWDVSTGNSVRIFT 574 (707)
T ss_pred EEEecCCCceeeeeecccCCchhhhcccccccceE----EECCcccccccC--------CCCceEEEEEcCCCcEEEEec
Confidence 333445677554 86555444 2222222 356666666555 3689999999987 5779
Q ss_pred hhcCcceeeeeccCCCCccccchh
Q 009736 158 AARGKVHALAKGDIHGCNFSWMSS 181 (527)
Q Consensus 158 ~~~~Kv~al~~~d~~~~~~S~~~~ 181 (527)
+|++.|+++++..-++-+.|...+
T Consensus 575 GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 575 GHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred CCCCceEEEEEcCCCceEeecccC
Confidence 999999999987766656554443
No 85
>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]
Probab=29.61 E-value=27 Score=33.51 Aligned_cols=28 Identities=32% Similarity=0.905 Sum_probs=22.2
Q ss_pred CcccccccccccccccccccccccCceecCCC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
...|..|+++-.+. . .||| ||.+||...
T Consensus 105 ~~rC~~C~kk~glt--g-f~Cr-CG~~fC~~H 132 (167)
T KOG3173|consen 105 KKRCFKCRKKVGLT--G-FKCR-CGNTFCGTH 132 (167)
T ss_pred chhhhhhhhhhccc--c-cccc-cCCcccccc
Confidence 45699999988853 4 8997 899998754
No 86
>PF09579 Spore_YtfJ: Sporulation protein YtfJ (Spore_YtfJ); InterPro: IPR014229 Proteins in this entry, exemplified by YtfJ of Bacillus subtilis, are encoded by bacterial genomes if, and only if, the species is capable of endospore formation. YtfJ was confirmed in spores of B. subtilis; it appears to be expressed in the forespore under control of SigF [].
Probab=29.24 E-value=99 Score=26.24 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=16.9
Q ss_pred eEEEEEeeeeEEEEEEeeeE
Q 009736 355 LAILSVAKVGVMVTYNIGTG 374 (527)
Q Consensus 355 lai~~v~K~G~~~gg~~G~G 374 (527)
..|+|+.+++|.+|+..|.+
T Consensus 6 ~tiIPv~~VsfGfG~Gg~~~ 25 (83)
T PF09579_consen 6 TTIIPVSKVSFGFGAGGGEG 25 (83)
T ss_pred EEEEEEEEEEEEEEEeCCCC
Confidence 56789999999998888775
No 87
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=28.32 E-value=17 Score=35.80 Aligned_cols=61 Identities=16% Similarity=0.439 Sum_probs=38.0
Q ss_pred ccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccc-------cCCCCCceeeCcchhhhhcc
Q 009736 215 LADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPV-------KFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~-------~~~~~~pvRVC~~C~~~L~~ 280 (527)
++....-.|.+|...+.- -.--.||++||..|......... .+...+....|-.|...++.
T Consensus 13 ~~~~~~~~CpICld~~~d-----PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRD-----PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCCccCCccCCCcCCC-----cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 334445689999987652 12257999999999865422110 01112345689999987754
No 88
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=27.92 E-value=35 Score=29.40 Aligned_cols=26 Identities=35% Similarity=0.784 Sum_probs=16.7
Q ss_pred Cccccccccccccc--------ccccccccccCc
Q 009736 220 ASACMLCGVRFHPI--------MCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~--------~~RrHHCR~CG~ 245 (527)
.+.|..|+++.... ..-|.+||.|++
T Consensus 33 rS~C~~C~~~L~~~~lIPi~S~l~lrGrCr~C~~ 66 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIPILSYLLLRGRCRYCGA 66 (92)
T ss_pred CCcCcCCCCcCcccccchHHHHHHhCCCCcccCC
Confidence 46788888876531 124777887765
No 89
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=27.80 E-value=24 Score=32.76 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=12.3
Q ss_pred ccCCCCcccccccccccc
Q 009736 215 LADSSASACMLCGVRFHP 232 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~ 232 (527)
..+..-+.|+.|+..+-.
T Consensus 86 ~~~~~~sRC~~CN~~L~~ 103 (147)
T PF01927_consen 86 RLDPIFSRCPKCNGPLRP 103 (147)
T ss_pred ccCCCCCccCCCCcEeee
Confidence 334445789999997754
No 90
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=26.63 E-value=19 Score=25.51 Aligned_cols=28 Identities=29% Similarity=0.672 Sum_probs=19.0
Q ss_pred cccccccccccccccccccccCceecCCCCCC
Q 009736 223 CMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 223 C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~ 254 (527)
|..|...+. .....-.||++||..|...
T Consensus 1 C~iC~~~~~----~~~~~~~CGH~fC~~C~~~ 28 (39)
T PF13923_consen 1 CPICLDELR----DPVVVTPCGHSFCKECIEK 28 (39)
T ss_dssp ETTTTSB-S----SEEEECTTSEEEEHHHHHH
T ss_pred CCCCCCccc----CcCEECCCCCchhHHHHHH
Confidence 556655332 3446779999999999754
No 91
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=26.38 E-value=38 Score=34.58 Aligned_cols=34 Identities=26% Similarity=0.578 Sum_probs=26.4
Q ss_pred ccCCCCcccccccccccccc------cccccccccCceec
Q 009736 215 LADSSASACMLCGVRFHPIM------CSRHHCRFCGGIFC 248 (527)
Q Consensus 215 v~d~~~~~C~~C~~~F~~~~------~RrHHCR~CG~ifC 248 (527)
-.-++++.|..|.++|..+- .-..||..|++.|=
T Consensus 127 p~rKeVSRCr~C~~rYDPVP~dkmwG~aef~C~~C~h~F~ 166 (278)
T PF15135_consen 127 PQRKEVSRCRKCRKRYDPVPCDKMWGIAEFHCPKCRHNFR 166 (278)
T ss_pred CcccccccccccccccCCCccccccceeeeecccccccch
Confidence 44566899999999987542 34789999999873
No 92
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=26.19 E-value=21 Score=36.91 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=19.1
Q ss_pred CcccccccccccccccccccccccCce
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGI 246 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~i 246 (527)
.+.|..|..+=+ -|-|||+.|++.
T Consensus 102 ~SfC~KC~~pK~---prTHHCsiC~kC 125 (309)
T KOG1313|consen 102 DSFCNKCNYPKS---PRTHHCSICNKC 125 (309)
T ss_pred ccHHhhcCCCCC---CCcchhhHHhhH
Confidence 467889988766 388999998874
No 93
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=26.07 E-value=32 Score=26.52 Aligned_cols=24 Identities=25% Similarity=0.649 Sum_probs=14.7
Q ss_pred cccccccccccccc-cccccccccC
Q 009736 221 SACMLCGVRFHPIM-CSRHHCRFCG 244 (527)
Q Consensus 221 ~~C~~C~~~F~~~~-~RrHHCR~CG 244 (527)
-.|..|++.|.++. .+--.|..||
T Consensus 7 Y~C~~Cg~~~~~~~~~~~irCp~Cg 31 (49)
T COG1996 7 YKCARCGREVELDQETRGIRCPYCG 31 (49)
T ss_pred EEhhhcCCeeehhhccCceeCCCCC
Confidence 36999999998542 2334455544
No 94
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=17 Score=36.48 Aligned_cols=34 Identities=24% Similarity=0.567 Sum_probs=24.3
Q ss_pred cccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 241 RFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 241 R~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
-.||+.||+-|.-.+..+ ......|-.|...++.
T Consensus 63 TlCGHLFCWpClyqWl~~------~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 63 TLCGHLFCWPCLYQWLQT------RPNSKECPVCKAEVSI 96 (230)
T ss_pred eecccceehHHHHHHHhh------cCCCeeCCcccccccc
Confidence 489999999999776544 2345667777776643
No 95
>TIGR01712 phage_N6A_met phage N-6-adenine-methyltransferase. This is a model for a phage-borne DNA N-6-adenine-methyltransferase.
Probab=25.28 E-value=1.8e+02 Score=27.99 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=38.0
Q ss_pred cceeccCCCCCHHHHHHHHHHHHHhhh-ccCcCCCCCCchhHHHhhcceeEEEEEeeeeEEE
Q 009736 307 RSWVNFPWGQSMEYEIYKAANTIRGYS-KVGFLKPEKSIPDIILRQAKGLAILSVAKVGVMV 367 (527)
Q Consensus 307 R~wln~P~~~sl~~eI~KAa~~L~~~~-k~~~~~pd~~iP~~~l~~AkGlai~~v~K~G~~~ 367 (527)
|-|+|.|++.. ..=|.||++-.++-. .+.+|-|...-..=..+.|.+|.+++-.+.+|+.
T Consensus 64 ~vf~NPPYS~~-~~~v~kaae~~~~~g~~~VmLlpa~tst~W~~~~a~ei~fi~~GRi~F~~ 124 (166)
T TIGR01712 64 AVWLNPPYSRP-DIFVNKTAWFTEARQAAEVILIEADLSTVWWPEDIDGNEYIRSGRIAFIS 124 (166)
T ss_pred eEEecCCCCcH-HHHHHHHHHHHHhhCCeEEEEEecCCcchhHHhcCCeeEEeeCCceeeEc
Confidence 78999999866 567888887554432 1222222211112245778899988778888865
No 96
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.81 E-value=31 Score=37.75 Aligned_cols=34 Identities=24% Similarity=0.631 Sum_probs=27.2
Q ss_pred Cccccccccccccc--------ccccccccccCceecCCCCC
Q 009736 220 ASACMLCGVRFHPI--------MCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 220 ~~~C~~C~~~F~~~--------~~RrHHCR~CG~ifC~~CS~ 253 (527)
.-.|+.|+++|+.+ .....||-+||.-+-..|+.
T Consensus 128 ~Y~Cp~C~kkyt~Lea~~L~~~~~~~F~C~~C~gelveDe~~ 169 (436)
T KOG2593|consen 128 GYVCPNCQKKYTSLEALQLLDNETGEFHCENCGGELVEDENK 169 (436)
T ss_pred cccCCccccchhhhHHHHhhcccCceEEEecCCCchhccccc
Confidence 45799999999832 13689999999988888875
No 97
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=24.80 E-value=34 Score=25.78 Aligned_cols=12 Identities=42% Similarity=1.063 Sum_probs=8.1
Q ss_pred cccccccccccc
Q 009736 222 ACMLCGVRFHPI 233 (527)
Q Consensus 222 ~C~~C~~~F~~~ 233 (527)
.|..|+..|..+
T Consensus 7 ~C~~Cg~~fe~~ 18 (52)
T TIGR02605 7 RCTACGHRFEVL 18 (52)
T ss_pred EeCCCCCEeEEE
Confidence 477777777754
No 98
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.65 E-value=37 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=15.9
Q ss_pred Ccccccccccccccccccc-cccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRH-HCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrH-HCR~CG~ 245 (527)
.-.|..|+..|..- .... +|..||.
T Consensus 71 ~~~C~~Cg~~~~~~-~~~~~~CP~Cgs 96 (117)
T PRK00564 71 ELECKDCSHVFKPN-ALDYGVCEKCHS 96 (117)
T ss_pred EEEhhhCCCccccC-CccCCcCcCCCC
Confidence 45799999988852 2222 3666654
No 99
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=24.51 E-value=37 Score=30.43 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=16.5
Q ss_pred CcccccccccccccccccccccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
.-.|..|+..|... ...-+|..||.
T Consensus 70 ~~~C~~Cg~~~~~~-~~~~~CP~Cgs 94 (115)
T TIGR00100 70 ECECEDCSEEVSPE-IDLYRCPKCHG 94 (115)
T ss_pred EEEcccCCCEEecC-CcCccCcCCcC
Confidence 46799999999853 33344666653
No 100
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=19 Score=36.95 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=30.5
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
--.|..|-..- -.--|+.||+|||..|.-.. ...+..--|.-|-.+.
T Consensus 215 d~kC~lC~e~~-----~~ps~t~CgHlFC~~Cl~~~-------~t~~k~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEP-----EVPSCTPCGHLFCLSCLLIS-------WTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccceeeeeccc-----CCcccccccchhhHHHHHHH-------HHhhccccCchhhhhc
Confidence 34688887633 34569999999999996431 1223344577776654
No 101
>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=24.15 E-value=27 Score=37.19 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=41.7
Q ss_pred CccccCCCCCCCCCCceeecccCCCCCCCCcccccCcccCCCcccCCCC-Ccccc
Q 009736 86 GKYFFYDSPHYEDTGVWIPVSVPPMLDSKDDEWARGFHSDGGYFPEVDM-GWSQY 139 (527)
Q Consensus 86 ~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~-~w~~~ 139 (527)
++++-|+|- ..++.|+.|+..--++.+|..-|||++..-.|+.+-.| +|.++
T Consensus 18 eNk~CfeC~--a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkei 70 (386)
T KOG0704|consen 18 ENKKCFECG--APNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEI 70 (386)
T ss_pred cCCceeecC--CCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHH
Confidence 455555553 33899999999999999999999999999888888877 47543
No 102
>PF14353 CpXC: CpXC protein
Probab=23.88 E-value=41 Score=30.21 Aligned_cols=10 Identities=40% Similarity=1.055 Sum_probs=8.4
Q ss_pred cccccccccc
Q 009736 222 ACMLCGVRFH 231 (527)
Q Consensus 222 ~C~~C~~~F~ 231 (527)
.|+.|+..|.
T Consensus 3 tCP~C~~~~~ 12 (128)
T PF14353_consen 3 TCPHCGHEFE 12 (128)
T ss_pred CCCCCCCeeE
Confidence 6889999886
No 103
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.82 E-value=28 Score=27.62 Aligned_cols=13 Identities=38% Similarity=0.984 Sum_probs=11.0
Q ss_pred cccccccCceecC
Q 009736 237 RHHCRFCGGIFCG 249 (527)
Q Consensus 237 rHHCR~CG~ifC~ 249 (527)
--.|-+||+|+|.
T Consensus 18 ~~NCl~CGkIiC~ 30 (57)
T PF06221_consen 18 APNCLNCGKIICE 30 (57)
T ss_pred cccccccChhhcc
Confidence 4579999999986
No 104
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=23.56 E-value=21 Score=35.45 Aligned_cols=61 Identities=20% Similarity=0.469 Sum_probs=39.9
Q ss_pred Cccccccccccccc-----------ccccccccccCceecCCCCCCee--ec---cccC---CCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPI-----------MCSRHHCRFCGGIFCGECSKGRS--LL---PVKF---RVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~-----------~~RrHHCR~CG~ifC~~CS~~~~--~l---P~~~---~~~~pvRVC~~C~~~L~~ 280 (527)
..-|..|++.|+-. ..|-..|..|++.|-..||-..- .+ +..| .-....-||..|--+-..
T Consensus 145 r~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~ 224 (267)
T KOG3576|consen 145 RHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSER 224 (267)
T ss_pred HHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCC
Confidence 45799999999732 24677899999999999985211 11 1111 112356799999866444
No 105
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=22.61 E-value=52 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.705 Sum_probs=13.5
Q ss_pred ccccccccccccccccccc-cccCceecCCCCCC
Q 009736 222 ACMLCGVRFHPIMCSRHHC-RFCGGIFCGECSKG 254 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHC-R~CG~ifC~~CS~~ 254 (527)
.|..|.. + .|.-+| -.|.++||..|-+.
T Consensus 9 rCs~C~~---~--l~~pv~l~~CeH~fCs~Ci~~ 37 (65)
T PF14835_consen 9 RCSICFD---I--LKEPVCLGGCEHIFCSSCIRD 37 (65)
T ss_dssp S-SSS-S-------SS-B---SSS--B-TTTGGG
T ss_pred CCcHHHH---H--hcCCceeccCccHHHHHHhHH
Confidence 4566654 3 277777 79999999999753
No 106
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=22.46 E-value=24 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=8.0
Q ss_pred ccccccccccccccccc
Q 009736 223 CMLCGVRFHPIMCSRHH 239 (527)
Q Consensus 223 C~~C~~~F~~~~~RrHH 239 (527)
|..|.+.+.-...||+|
T Consensus 2 C~~C~~Ey~~p~~RR~~ 18 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFH 18 (35)
T ss_dssp -HHHHHHHCSTTSTTTT
T ss_pred CHHHHHHHcCCCCCccc
Confidence 55566654322346555
No 107
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.17 E-value=45 Score=23.54 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=7.6
Q ss_pred cccccccccccc
Q 009736 222 ACMLCGVRFHPI 233 (527)
Q Consensus 222 ~C~~C~~~F~~~ 233 (527)
.|..|+..|..+
T Consensus 7 ~C~~Cg~~fe~~ 18 (41)
T smart00834 7 RCEDCGHTFEVL 18 (41)
T ss_pred EcCCCCCEEEEE
Confidence 466777766643
No 108
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=22.06 E-value=49 Score=31.23 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.0
Q ss_pred cccccccccCcee
Q 009736 235 CSRHHCRFCGGIF 247 (527)
Q Consensus 235 ~RrHHCR~CG~if 247 (527)
+||..|-.||+-|
T Consensus 26 RRRReC~~C~~RF 38 (147)
T TIGR00244 26 RRRRECLECHERF 38 (147)
T ss_pred eecccCCccCCcc
Confidence 5666666666644
No 109
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=21.97 E-value=44 Score=30.90 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=19.8
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCe
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~ 255 (527)
..+|+.|+.+.+ | .=|.|||..|-...
T Consensus 28 ~~hCp~Cg~PLF----~-----KdG~v~CPvC~~~~ 54 (131)
T COG1645 28 AKHCPKCGTPLF----R-----KDGEVFCPVCGYRE 54 (131)
T ss_pred HhhCcccCCcce----e-----eCCeEECCCCCceE
Confidence 468999999763 2 34899999997433
No 110
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.70 E-value=40 Score=34.72 Aligned_cols=62 Identities=26% Similarity=0.492 Sum_probs=30.6
Q ss_pred ccccccccccc--cc------ccccccccccCc------eecCCCCCCee-eccc---cCCCCCceeeCcchhhhhccch
Q 009736 221 SACMLCGVRFH--PI------MCSRHHCRFCGG------IFCGECSKGRS-LLPV---KFRVSDPQRVCDVCCVRLQSVQ 282 (527)
Q Consensus 221 ~~C~~C~~~F~--~~------~~RrHHCR~CG~------ifC~~CS~~~~-~lP~---~~~~~~pvRVC~~C~~~L~~~~ 282 (527)
..|+.|+..=. .+ ..|..||-.||. +-|..|-+... .+-. .......+-||+.|..-++.+.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~YlK~vd 252 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSYLKTVD 252 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEEEEEEE
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccchHHHHh
Confidence 68999998522 11 247789999995 57999986431 1110 0111234569999998876643
No 111
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.67 E-value=61 Score=38.08 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=6.2
Q ss_pred cccccccccc
Q 009736 222 ACMLCGVRFH 231 (527)
Q Consensus 222 ~C~~C~~~F~ 231 (527)
.|+.|...++
T Consensus 446 ~Cp~Cd~~lt 455 (730)
T COG1198 446 ECPNCDSPLT 455 (730)
T ss_pred cCCCCCcceE
Confidence 5666666655
No 112
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=21.65 E-value=37 Score=38.66 Aligned_cols=62 Identities=19% Similarity=0.386 Sum_probs=43.0
Q ss_pred CCccccccccccc-ccccccccccccCceecCCCCCCeee-ccccC---CCCCceeeCcchhhhhcc
Q 009736 219 SASACMLCGVRFH-PIMCSRHHCRFCGGIFCGECSKGRSL-LPVKF---RVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 219 ~~~~C~~C~~~F~-~~~~RrHHCR~CG~ifC~~CS~~~~~-lP~~~---~~~~pvRVC~~C~~~L~~ 280 (527)
.--.|..|++.+. .+..|-.-|+.+|+-||..|-.+... ||.+- -.-.+..||+.=...|..
T Consensus 339 Q~~~CAgC~~~i~~~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~~WDf~~y~Vs~~a~~~L~~ 405 (580)
T KOG1829|consen 339 QNFRCAGCGHTIGPDLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLHNWDFTKYPVSNFAKQFLDE 405 (580)
T ss_pred cCceecccCCCcccccccchhHhhhhhhhhCchhcccCcccccccceecccCcccccchhHHHHHHH
Confidence 3448999999998 44456777999999999999876543 46431 122466777766655543
No 113
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=21.55 E-value=32 Score=30.63 Aligned_cols=25 Identities=32% Similarity=0.705 Sum_probs=15.6
Q ss_pred CcccccccccccccccccccccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
.-.|..|+..|..- .....|..||.
T Consensus 70 ~~~C~~Cg~~~~~~-~~~~~CP~Cgs 94 (113)
T PF01155_consen 70 RARCRDCGHEFEPD-EFDFSCPRCGS 94 (113)
T ss_dssp EEEETTTS-EEECH-HCCHH-SSSSS
T ss_pred cEECCCCCCEEecC-CCCCCCcCCcC
Confidence 46799999999853 34445666654
No 114
>PF02945 Endonuclease_7: Recombination endonuclease VII; InterPro: IPR004211 This family of proteins which includes Bacteriophage T4 endonuclease VII, Mycobacteriophage D29 gene 59, and other as yet uncharacterised proteins. The T4 endonuclease VII (Endo VII) recognises a broad spectrum of DNA substrates ranging from branched DNAs to single base mismatches. The structure of this enzyme has been resolved and it was found that the monomers form an elongated, intertwined molecular dimer that exibits extreme domain swapping. Two pairs of antiparallel helices which form a novel 'four-helix cross' motif are the major dimerisation elements [].; PDB: 3GOX_A 3FC3_A 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=21.47 E-value=34 Score=29.00 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=14.2
Q ss_pred Ccccccccccccccccc--cccccccCce
Q 009736 220 ASACMLCGVRFHPIMCS--RHHCRFCGGI 246 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~R--rHHCR~CG~i 246 (527)
...|.+|+.++.....+ .-||..+|.|
T Consensus 22 ~~~C~iC~~~~~~~~~~~~vDHdH~tG~v 50 (81)
T PF02945_consen 22 GGRCAICGKPLPGESRKLVVDHDHKTGRV 50 (81)
T ss_dssp TTE-TTT-SEEETTCGGCEEEE-TTTTBE
T ss_pred CCcCcCCCCCcccCCCcceecCCCCCCCc
Confidence 35899999855432222 3477777764
No 115
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=21.25 E-value=45 Score=35.03 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=17.7
Q ss_pred CCCCcccccccccccccccccccccccCce
Q 009736 217 DSSASACMLCGVRFHPIMCSRHHCRFCGGI 246 (527)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~RrHHCR~CG~i 246 (527)
+.....|..|+.-= .-|-|||+.|++.
T Consensus 106 ~~~~~~C~~C~~~K---P~RS~HC~~Cn~C 132 (309)
T COG5273 106 FGTENFCSTCNIYK---PPRSHHCSICNRC 132 (309)
T ss_pred cccceecccccccc---CCCCccchhhcch
Confidence 34456788887622 1488888888764
No 116
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=21.04 E-value=35 Score=35.94 Aligned_cols=50 Identities=24% Similarity=0.603 Sum_probs=37.1
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccchhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQPY 284 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~~ 284 (527)
+..|-.|..+.-. +-|-- -|-.|||-+|..- .+.+.|-.|-+.+++++..
T Consensus 90 VHfCd~Cd~PI~I-YGRmI---PCkHvFCl~CAr~-----------~~dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI-YGRMI---PCKHVFCLECARS-----------DSDKICPLCDDRVQRIEQI 139 (389)
T ss_pred eEeecccCCccee-eeccc---ccchhhhhhhhhc-----------CccccCcCcccHHHHHHHh
Confidence 6789999998874 44655 4567999999752 2367899998888876654
No 117
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.55 E-value=40 Score=34.14 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=26.9
Q ss_pred ccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
+|..|...=+ ...-+=-.|++|||..|...- . -++|..|...+.
T Consensus 5 hCn~C~~~~~---~~~f~LTaC~HvfC~~C~k~~--~---------~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPS---QDPFFLTACRHVFCEPCLKAS--S---------PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCC---CCceeeeechhhhhhhhcccC--C---------ccccccccceee
Confidence 4666654211 122333489999999998631 1 119999987654
No 118
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=20.35 E-value=71 Score=25.63 Aligned_cols=33 Identities=27% Similarity=0.830 Sum_probs=22.9
Q ss_pred Ccccccccccccccc-cccccccccCce---ecCCCC
Q 009736 220 ASACMLCGVRFHPIM-CSRHHCRFCGGI---FCGECS 252 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~-~RrHHCR~CG~i---fC~~CS 252 (527)
...|..|+......- --+..|.+||++ -|.+|-
T Consensus 7 ~~~CtSCg~~i~~~~~~~~F~CPnCG~~~I~RC~~CR 43 (59)
T PRK14890 7 PPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCR 43 (59)
T ss_pred CccccCCCCcccCCCccCEeeCCCCCCeeEeechhHH
Confidence 457999999876432 246789999987 355553
No 119
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.32 E-value=48 Score=23.52 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=7.1
Q ss_pred CCCceeeCcchhh
Q 009736 264 VSDPQRVCDVCCV 276 (527)
Q Consensus 264 ~~~pvRVC~~C~~ 276 (527)
..++-.||..|-.
T Consensus 18 d~r~R~vC~~Cg~ 30 (34)
T PF14803_consen 18 DDRERLVCPACGF 30 (34)
T ss_dssp -SS-EEEETTTTE
T ss_pred CCccceECCCCCC
Confidence 4556667777753
No 120
>PHA02942 putative transposase; Provisional
Probab=20.27 E-value=71 Score=34.51 Aligned_cols=28 Identities=29% Similarity=0.573 Sum_probs=18.1
Q ss_pred CcccccccccccccccccccccccCcee
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~if 247 (527)
+..|+.|+..=..+..|.+.|..||...
T Consensus 325 Sq~Cs~CG~~~~~l~~r~f~C~~CG~~~ 352 (383)
T PHA02942 325 SVSCPKCGHKMVEIAHRYFHCPSCGYEN 352 (383)
T ss_pred CccCCCCCCccCcCCCCEEECCCCCCEe
Confidence 5678888863222224678888888763
No 121
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=20.19 E-value=29 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=20.3
Q ss_pred ccccccccccccccccccccccCceecCCCCCCe
Q 009736 222 ACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (527)
Q Consensus 222 ~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~ 255 (527)
.|..|...+. ....-..||..||..|....
T Consensus 1 ~C~iC~~~~~----~~~~~~~C~H~~c~~C~~~~ 30 (45)
T cd00162 1 ECPICLEEFR----EPVVLLPCGHVFCRSCIDKW 30 (45)
T ss_pred CCCcCchhhh----CceEecCCCChhcHHHHHHH
Confidence 3777877662 23344569999999997643
Done!