Query 009736
Match_columns 527
No_of_seqs 424 out of 1702
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:52:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 1.9E-20 6.4E-25 156.9 4.3 70 209-280 10-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 4.6E-20 1.6E-24 154.5 6.1 70 210-281 4-79 (84)
3 3t7l_A Zinc finger FYVE domain 99.8 4.8E-20 1.7E-24 156.4 4.1 74 206-283 6-79 (90)
4 2yw8_A RUN and FYVE domain-con 99.8 9.6E-20 3.3E-24 151.9 4.7 67 210-280 9-75 (82)
5 1vfy_A Phosphatidylinositol-3- 99.8 5.9E-20 2E-24 150.0 2.7 69 209-282 3-71 (73)
6 1joc_A EEA1, early endosomal a 99.7 4.7E-19 1.6E-23 159.0 4.5 66 210-279 59-124 (125)
7 1dvp_A HRS, hepatocyte growth 99.7 1.7E-17 5.7E-22 162.0 4.2 68 208-280 152-219 (220)
8 3zyq_A Hepatocyte growth facto 99.7 2.7E-17 9.1E-22 161.4 4.4 70 207-281 154-223 (226)
9 1wfk_A Zinc finger, FYVE domai 99.6 8.1E-17 2.8E-21 136.0 4.3 62 217-281 6-67 (88)
10 1y02_A CARP2, FYVE-ring finger 99.6 4.8E-16 1.6E-20 138.2 1.5 60 211-280 10-69 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.5 5.2E-16 1.8E-20 164.1 0.0 70 208-280 363-432 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 97.5 2.7E-05 9.2E-10 81.5 1.9 46 209-254 346-391 (406)
13 1zbd_B Rabphilin-3A; G protein 95.8 0.005 1.7E-07 55.5 3.2 54 219-277 54-107 (134)
14 2zet_C Melanophilin; complex, 95.5 0.0059 2E-07 56.2 2.6 50 220-277 68-117 (153)
15 3ky9_A Proto-oncogene VAV; cal 93.5 0.027 9.1E-07 61.8 2.4 45 210-254 519-563 (587)
16 2csz_A Synaptotagmin-like prot 91.1 0.094 3.2E-06 42.6 2.2 50 220-278 25-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 89.1 0.36 1.2E-05 40.0 4.1 32 217-251 22-53 (85)
18 1wfh_A Zinc finger (AN1-like) 86.1 0.49 1.7E-05 37.2 3.0 29 219-251 14-42 (64)
19 1wfp_A Zinc finger (AN1-like) 85.7 0.81 2.8E-05 36.9 4.2 30 218-251 23-52 (74)
20 1wfl_A Zinc finger protein 216 84.9 0.85 2.9E-05 36.8 3.9 29 219-251 24-52 (74)
21 1wg2_A Zinc finger (AN1-like) 78.5 1.4 4.9E-05 34.5 3.1 28 220-251 15-42 (64)
22 1z60_A TFIIH basal transcripti 77.8 0.29 1E-05 37.9 -1.1 32 220-253 15-46 (59)
23 2a20_A Regulating synaptic mem 76.2 2.6 9E-05 32.5 3.8 52 219-277 8-60 (62)
24 2e72_A POGO transposable eleme 75.6 0.52 1.8E-05 34.9 -0.2 35 212-247 5-40 (49)
25 1x4w_A Hypothetical protein FL 72.5 1.8 6.2E-05 34.3 2.2 32 217-251 12-45 (67)
26 1twf_L ABC10-alpha, DNA-direct 68.3 1.9 6.4E-05 34.4 1.5 28 220-247 28-56 (70)
27 2ecm_A Ring finger and CHY zin 59.5 5.1 0.00017 28.8 2.3 50 219-278 4-53 (55)
28 3lrq_A E3 ubiquitin-protein li 53.0 3.3 0.00011 34.3 0.4 46 221-278 23-68 (100)
29 2jrp_A Putative cytoplasmic pr 52.9 8.3 0.00029 31.6 2.8 56 221-280 3-63 (81)
30 1iym_A EL5; ring-H2 finger, ub 52.6 7.9 0.00027 27.8 2.4 48 220-277 5-52 (55)
31 2egp_A Tripartite motif-contai 51.0 5.8 0.0002 30.7 1.5 54 220-280 12-65 (79)
32 4gzn_C ZFP-57, zinc finger pro 50.0 6 0.0002 29.8 1.4 28 221-248 5-43 (60)
33 1x4j_A Ring finger protein 38; 49.8 6 0.00021 30.6 1.4 50 219-279 22-71 (75)
34 2ect_A Ring finger protein 126 47.0 13 0.00044 28.8 3.0 51 219-280 14-64 (78)
35 1bor_A Transcription factor PM 46.5 12 0.00043 27.3 2.7 31 219-254 5-35 (56)
36 2ct7_A Ring finger protein 31; 46.2 9.8 0.00034 30.9 2.2 32 222-253 27-59 (86)
37 3cc2_Z 50S ribosomal protein L 45.2 6.2 0.00021 34.4 0.9 33 220-252 60-93 (116)
38 2kiz_A E3 ubiquitin-protein li 44.9 10 0.00035 28.6 2.1 51 219-280 13-63 (69)
39 1wd2_A Ariadne-1 protein homol 44.3 16 0.00054 27.9 3.0 35 220-254 6-43 (60)
40 2lv2_A Insulinoma-associated p 44.1 15 0.00052 29.5 3.1 13 220-232 28-40 (85)
41 1e4u_A Transcriptional repress 43.7 7.7 0.00026 31.0 1.2 52 220-280 11-62 (78)
42 2ecl_A Ring-box protein 2; RNF 42.9 11 0.00037 29.9 2.0 61 210-279 5-75 (81)
43 1jm7_B BARD1, BRCA1-associated 42.0 8 0.00027 32.7 1.1 43 221-278 23-65 (117)
44 2lce_A B-cell lymphoma 6 prote 41.0 18 0.00063 26.9 3.0 13 220-232 17-29 (74)
45 2yur_A Retinoblastoma-binding 41.0 11 0.00038 29.1 1.7 48 220-278 15-62 (74)
46 1x4v_A Hypothetical protein LO 40.4 16 0.00053 28.5 2.4 27 220-250 12-40 (63)
47 1chc_A Equine herpes virus-1 r 40.2 13 0.00044 27.9 1.9 48 220-280 5-52 (68)
48 3l11_A E3 ubiquitin-protein li 39.4 7.3 0.00025 32.8 0.4 48 220-280 15-62 (115)
49 2ct2_A Tripartite motif protei 38.6 10 0.00034 29.9 1.1 53 220-279 15-67 (88)
50 3uk3_C Zinc finger protein 217 37.9 14 0.00048 25.9 1.7 12 221-232 5-16 (57)
51 2ecv_A Tripartite motif-contai 37.1 15 0.00051 28.4 1.9 53 220-280 19-71 (85)
52 1bbo_A Human enhancer-binding 36.7 19 0.00065 25.1 2.3 10 222-231 3-12 (57)
53 2ysj_A Tripartite motif-contai 36.0 11 0.00036 28.0 0.8 32 220-256 20-51 (63)
54 2ayj_A 50S ribosomal protein L 36.0 12 0.00041 28.5 1.1 22 220-244 19-40 (56)
55 2djb_A Polycomb group ring fin 35.7 15 0.00051 28.1 1.7 48 220-280 15-62 (72)
56 2adr_A ADR1; transcription reg 35.5 19 0.00065 25.5 2.2 10 222-231 4-13 (60)
57 2ckl_B Ubiquitin ligase protei 34.8 8.9 0.0003 34.4 0.2 48 221-280 55-102 (165)
58 2ysl_A Tripartite motif-contai 34.2 12 0.00041 28.4 0.9 49 220-279 20-68 (73)
59 1vd4_A Transcription initiatio 33.4 11 0.00037 27.8 0.5 28 221-248 15-50 (62)
60 2ecn_A Ring finger protein 141 33.4 6.5 0.00022 29.8 -0.8 46 220-280 15-60 (70)
61 2d8t_A Dactylidin, ring finger 32.8 12 0.0004 28.6 0.6 47 219-279 14-60 (71)
62 3h0g_L DNA-directed RNA polyme 32.6 21 0.0007 27.8 2.0 26 220-245 21-46 (63)
63 1wys_A Riken cDNA 2310008M20 p 32.5 43 0.0015 26.9 3.9 27 220-250 14-42 (75)
64 2y43_A E3 ubiquitin-protein li 31.8 11 0.00039 30.6 0.4 46 221-279 23-68 (99)
65 2ckl_A Polycomb group ring fin 31.5 11 0.00037 31.3 0.2 48 220-280 15-62 (108)
66 3j20_Y 30S ribosomal protein S 31.5 18 0.0006 26.8 1.3 28 220-247 19-47 (50)
67 1x5w_A Zinc finger protein 64, 31.2 21 0.00071 26.3 1.8 11 221-231 10-20 (70)
68 1x6e_A Zinc finger protein 24; 30.8 21 0.00071 26.6 1.7 11 221-231 15-25 (72)
69 1vq8_Z 50S ribosomal protein L 30.6 15 0.00051 30.1 0.9 32 220-252 27-60 (83)
70 3ng2_A RNF4, snurf, ring finge 30.5 11 0.00038 28.4 0.1 52 219-279 9-62 (71)
71 2ep4_A Ring finger protein 24; 30.0 16 0.00055 27.8 1.0 50 220-280 15-64 (74)
72 1v87_A Deltex protein 2; ring- 30.0 8.9 0.0003 32.0 -0.6 56 220-279 25-93 (114)
73 2eps_A POZ-, at HOOK-, and zin 29.9 21 0.00072 25.1 1.5 11 221-231 13-23 (54)
74 3fl2_A E3 ubiquitin-protein li 29.6 12 0.00043 31.8 0.3 47 221-280 53-99 (124)
75 1jm7_A BRCA1, breast cancer ty 28.7 16 0.00054 30.1 0.8 48 221-279 22-69 (112)
76 3v2d_5 50S ribosomal protein L 28.3 19 0.00063 27.7 1.0 20 220-244 30-50 (60)
77 2ecy_A TNF receptor-associated 28.3 5.1 0.00017 30.2 -2.2 48 220-280 15-62 (66)
78 2xeu_A Ring finger protein 4; 28.0 11 0.00039 27.6 -0.3 51 220-279 3-55 (64)
79 2ctd_A Zinc finger protein 512 27.9 19 0.00065 29.2 1.1 11 221-231 35-46 (96)
80 2cot_A Zinc finger protein 435 27.8 58 0.002 24.2 3.9 13 219-231 17-29 (77)
81 2ecj_A Tripartite motif-contai 27.7 25 0.00086 25.1 1.7 31 220-255 15-45 (58)
82 3jyw_9 60S ribosomal protein L 27.5 25 0.00084 28.1 1.6 28 220-250 26-57 (72)
83 2csy_A Zinc finger protein 183 27.4 19 0.00065 28.1 1.0 46 220-279 15-60 (81)
84 2ea6_A Ring finger protein 4; 27.4 19 0.00065 26.7 0.9 51 219-278 14-66 (69)
85 1wim_A KIAA0161 protein; ring 27.3 17 0.00057 29.4 0.7 55 220-277 5-61 (94)
86 1wfe_A Riken cDNA 2310008M20 p 27.2 25 0.00084 29.0 1.7 27 220-250 25-53 (86)
87 3ztg_A E3 ubiquitin-protein li 27.0 16 0.00054 29.2 0.5 48 220-278 13-60 (92)
88 2jne_A Hypothetical protein YF 26.9 24 0.00084 29.8 1.6 32 221-253 33-69 (101)
89 3j21_i 50S ribosomal protein L 26.6 21 0.00072 29.3 1.1 29 220-251 35-67 (83)
90 4a0k_B E3 ubiquitin-protein li 26.6 15 0.00053 31.7 0.3 56 212-277 40-109 (117)
91 3iz5_m 60S ribosomal protein L 25.9 25 0.00087 29.3 1.5 29 220-251 36-68 (92)
92 2l0b_A E3 ubiquitin-protein li 25.7 15 0.00053 29.6 0.2 49 219-278 39-87 (91)
93 2gqj_A Zinc finger protein KIA 24.8 19 0.00065 28.8 0.5 12 220-231 24-35 (98)
94 2elu_A Zinc finger protein 406 24.4 18 0.00062 24.5 0.3 11 236-246 8-18 (37)
95 2drp_A Protein (tramtrack DNA- 24.2 32 0.0011 24.7 1.7 11 221-231 11-21 (66)
96 3j21_g 50S ribosomal protein L 24.0 29 0.00099 25.9 1.4 24 220-246 14-37 (51)
97 2epr_A POZ-, at HOOK-, and zin 23.6 29 0.001 23.5 1.3 11 221-231 13-23 (48)
98 3izc_m 60S ribosomal protein R 23.5 30 0.001 28.9 1.5 29 220-251 36-68 (92)
99 1ffk_W Ribosomal protein L37AE 23.4 28 0.00094 27.9 1.2 28 220-250 27-58 (73)
100 2gmg_A Hypothetical protein PF 23.4 32 0.0011 29.4 1.7 10 221-230 68-77 (105)
101 3twe_A Alpha4H; unknown functi 23.3 42 0.0014 21.1 1.8 17 510-526 2-18 (27)
102 2jmo_A Parkin; IBR, E3 ligase, 23.1 1E+02 0.0035 24.4 4.6 36 218-253 23-66 (80)
103 2d9h_A Zinc finger protein 692 23.1 28 0.00095 26.1 1.2 11 221-231 8-18 (78)
104 2lcq_A Putative toxin VAPC6; P 22.9 28 0.00096 31.3 1.3 24 221-245 133-156 (165)
105 1wil_A KIAA1045 protein; ring 22.6 36 0.0012 28.1 1.8 31 221-254 16-46 (89)
106 2ct1_A Transcriptional repress 22.4 37 0.0013 25.4 1.8 12 221-232 16-27 (77)
107 2y1n_A E3 ubiquitin-protein li 22.3 10 0.00035 39.6 -1.9 48 221-281 333-380 (389)
108 2ecw_A Tripartite motif-contai 22.0 23 0.00079 27.3 0.5 52 220-279 19-70 (85)
109 2fiy_A Protein FDHE homolog; F 21.8 41 0.0014 33.9 2.4 61 220-281 182-266 (309)
110 2zjr_Z 50S ribosomal protein L 21.5 30 0.001 26.5 1.1 21 220-245 30-51 (60)
111 1t1h_A Gspef-atpub14, armadill 21.4 25 0.00086 27.0 0.6 47 220-279 8-54 (78)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.80 E-value=1.9e-20 Score=156.92 Aligned_cols=70 Identities=41% Similarity=0.972 Sum_probs=63.4
Q ss_pred CCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 209 ~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
+..+.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++.+||. .+..+|+|||+.||..|+.
T Consensus 10 ~~~~~W~pd~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 10 QSKGYWQEDEDAPACNGCGCVFTTT-VRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCCSCCCCTTTCCBCTTTCCBCCTT-SCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred CCCCccccCCCCCCCcCcCCccccc-hhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence 3567999999999999999999986 79999999999999999999999984 3447899999999998865
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=154.51 Aligned_cols=70 Identities=20% Similarity=0.447 Sum_probs=61.7
Q ss_pred CCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCC------CCceeeCcchhhhhccc
Q 009736 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRV------SDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~------~~pvRVC~~C~~~L~~~ 281 (527)
..+.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++++||.. +. .+++|||+.||..|+..
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~l~~~-g~~~p~~~~~~~RVC~~C~~~l~~~ 79 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFSVL-KKRRSCSNCGNSFCSRCCSFKVPKSSM-GATAPEAQRETVFVCASCNQTLSKS 79 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCCSS-SCCEECSSSCCEECTTTSCEEECSTTT-SCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred CCCccccCCCCCcCcCcCCccccc-hhhhhhcCCCcEEChhhcCCceecccc-cccCccccCCccEECHHHHHHHhcc
Confidence 357999999999999999999976 899999999999999999999999842 32 36899999999998653
No 3
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.78 E-value=4.8e-20 Score=156.38 Aligned_cols=74 Identities=39% Similarity=0.875 Sum_probs=66.1
Q ss_pred cccCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccchh
Q 009736 206 LLDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQP 283 (527)
Q Consensus 206 ~~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~~ 283 (527)
++...+|.|++|.++..|+.|+++|+++ +||||||+||+|||..||.++.++|. ..+|+|||+.||..|+..+.
T Consensus 6 ~l~~~~p~W~~d~~~~~C~~C~~~F~~~-~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 6 VLGQKQPTWVPDSEAPNCMNCQVKFTFT-KRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp CTTTSCCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC-
T ss_pred ccCCCCCcCcccccCCcCcCCCCcccch-hhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHhh
Confidence 4567789999999999999999999976 79999999999999999999999974 35899999999999987654
No 4
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.77 E-value=9.6e-20 Score=151.94 Aligned_cols=67 Identities=40% Similarity=0.849 Sum_probs=56.7
Q ss_pred CCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
..|.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++++||. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFSIS-RRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCBTT-BCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCcccCc-cccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 347999999999999999999976 79999999999999999999999984 47899999999998865
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.77 E-value=5.9e-20 Score=149.95 Aligned_cols=69 Identities=38% Similarity=0.918 Sum_probs=58.0
Q ss_pred CCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccch
Q 009736 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSVQ 282 (527)
Q Consensus 209 ~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~~ 282 (527)
..+|.|+++ ..|+.|+++|+++ +||||||+||+|||+.||+++++||. ++..+|+|||+.||..|+.++
T Consensus 3 ~~~p~W~~~---~~C~~C~~~F~~~-~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 3 KTPADWIDS---DACMICSKKFSLL-NRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp ----CCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHHH
T ss_pred CCCCcCccC---CcccCCCCccCCc-cccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHHh
Confidence 357899996 4899999999986 79999999999999999999999984 455689999999999987653
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.75 E-value=4.7e-19 Score=159.00 Aligned_cols=66 Identities=45% Similarity=0.981 Sum_probs=60.7
Q ss_pred CCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
.+|.|+||+++..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ..+|+|||+.||..|+
T Consensus 59 ~~~~W~~d~~~~~C~~C~~~Fs~~-~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 59 LNRKWAEDNEVQNCMACGKGFSVT-VRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HHCCCCCGGGCCBCTTTCCBCCSS-SCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCCccccCCCCCCCcCcCCccccc-cccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 457999999999999999999976 79999999999999999999999874 4789999999999875
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.67 E-value=1.7e-17 Score=161.98 Aligned_cols=68 Identities=37% Similarity=0.891 Sum_probs=60.2
Q ss_pred cCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 208 ~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...+|.|+++ ..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ++..+|+|||+.||..|+.
T Consensus 152 ~~~~~~W~~~---~~C~~C~~~F~~~-~rrhhCr~CG~v~C~~Cs~~~~~~~~-~~~~~~~RvC~~C~~~l~~ 219 (220)
T 1dvp_A 152 ADTAPNWADG---RVCHRCRVEFTFT-NRKHHCRNCGQVFCGQCTAKQCPLPK-YGIEKEVRVCDGCFAALQR 219 (220)
T ss_dssp CSCCCCCCCC---SBCTTTCCBCCSS-SCCEECTTTCCEECSTTSCEEEEEGG-GTEEEEEEECHHHHHHHHH
T ss_pred ccccccCCCC---CccCCCCCccCCc-ccccccCCcCCEEChHHhCCeeecCc-CCCCCCCEeCHHHHHHHhc
Confidence 3458899985 6999999999976 79999999999999999999999984 5667899999999998753
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.66 E-value=2.7e-17 Score=161.40 Aligned_cols=70 Identities=37% Similarity=0.901 Sum_probs=61.1
Q ss_pred ccCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 207 LDAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 207 ~~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
....+|.|+++ ..|+.|+++|+++ +||||||+||+|||+.||.++.++|. ++..+|+|||+.||..|+..
T Consensus 154 ~~~~~p~W~~~---~~C~~C~~~F~~~-~RrhHCR~CG~v~C~~Cs~~~~~~p~-~~~~~~~RVC~~C~~~l~~~ 223 (226)
T 3zyq_A 154 AAERAPDWVDA---EECHRCRVQFGVM-TRKHHCRACGQIFCGKCSSKYSTIPK-FGIEKEVRVCEPCYEQLNRK 223 (226)
T ss_dssp CCCCCCCCCCC---SBCTTTCCBCBTT-BCCEECTTTCCEECTTTCCEEEEEGG-GTEEEEEEECHHHHHHHCC-
T ss_pred hcccccccccC---CCCcCcCCCCCcc-ccccccCCCcCEeChhhcCCcccCCC-CCCCCCCEeCHHHHHHhhhh
Confidence 35578999985 5899999999976 79999999999999999999999984 45678999999999998753
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.64 E-value=8.1e-17 Score=136.02 Aligned_cols=62 Identities=29% Similarity=0.594 Sum_probs=54.4
Q ss_pred CCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 217 DSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
+.++..|+.|+++|+++ +||||||+||+|||+.||.++++||. + ..+|+|||+.||..|+..
T Consensus 6 ~~~~~~C~~C~~~F~~~-~RrHHCR~CG~vfC~~Cs~~~~~lp~-~-g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLF-KKEYGCKNCGRAFCNGCLSFSALVPR-A-GNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCCCSBCTTTCCBCCSS-SCEEECSSSCCEEETTTSCEEEEETT-T-TSEEEEECHHHHHHHHHC
T ss_pred CCcCCCCcCcCCcccCc-cccccCCCCCCEEChhHcCCceeccc-c-CCCcCEECHHHHHHHHhc
Confidence 34577999999999986 79999999999999999999999984 2 357999999999998653
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.56 E-value=4.8e-16 Score=138.23 Aligned_cols=60 Identities=22% Similarity=0.431 Sum_probs=43.2
Q ss_pred CCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 211 PPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 211 ~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
.+.|.||.++..|+.|+.+|+++ +||||||+||+|||+.||.++.+ ++|||+.||..+..
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs~~-~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~~ 69 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFANT-ARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRAT 69 (120)
T ss_dssp ----------CCCTTTCCCCSSG-GGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHHT
T ss_pred ccCCcCccccCcccCcCCccccc-cccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHhc
Confidence 34789999999999999999976 89999999999999999998753 49999999998754
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=5.2e-16 Score=164.07 Aligned_cols=70 Identities=33% Similarity=0.709 Sum_probs=0.0
Q ss_pred cCCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 208 DAEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 208 ~~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...+|.|+||.++..|+.|+++|+++ .||||||+||++||..||.++.++|. ...+|+|||+.||..|+.
T Consensus 363 ~~~~p~w~~~~~~~~c~~c~~~f~~~-~r~h~Cr~Cg~~~C~~Cs~~~~~~~~--~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 363 GERPPTLVPVTHVMMCMNCGCDFSLT-LRRHHCHACGKIVCRNCSRNKYPLKY--LKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccCCCcCCCcccCCcCCCcCCCCCCc-chhhhcccCcCEeehhhCCCeeeCCC--CCCCcCEecHHHHHHHHh
Confidence 44689999999999999999999975 79999999999999999999998873 457899999999998754
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.49 E-value=2.7e-05 Score=81.46 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCCCCcccCCCCcccccccccccccccccccccccCceecCCCCCC
Q 009736 209 AEPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 209 ~~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~ 254 (527)
...+.|.++...+.|+.|+..|.-+++|+||||.||.++|..|+..
T Consensus 346 ~h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 346 GHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp GCCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 4567899999999999999999644589999999999999999873
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=95.77 E-value=0.005 Score=55.46 Aligned_cols=54 Identities=20% Similarity=0.576 Sum_probs=44.5
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
....|..|.++|+++..+.|-|..|..-||.+|.... + .....+.-+|..|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~--~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S--NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C--CSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C--CCCCccceechhhHHH
Confidence 4678999999998777789999999999999998642 1 1235678999999975
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=95.46 E-value=0.0059 Score=56.18 Aligned_cols=50 Identities=26% Similarity=0.685 Sum_probs=43.3
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
...|..|.++|.++..+.+-|..|..-||.+|+.+ +| ..+.-+|..|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHH
Confidence 57999999999998889999999999999999842 22 3578999999976
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=93.50 E-value=0.027 Score=61.77 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=37.7
Q ss_pred CCCCcccCCCCcccccccccccccccccccccccCceecCCCCCC
Q 009736 210 EPPRWLADSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~ 254 (527)
....|.+....+.|..|+..|.-+..+.|||+.||.++|..|...
T Consensus 519 H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 519 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CCEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred CceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 344677888899999999998434579999999999999999864
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.12 E-value=0.094 Score=42.61 Aligned_cols=50 Identities=22% Similarity=0.526 Sum_probs=42.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
...|..|+.+|++|+.|---|+.|-+-||.+|-.. . ..+.-.|..|+...
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~---~------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQ---E------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEE---C------STTCEEEHHHHSSC
T ss_pred ccchhhhCccccccccCCCcCcccChhhccccccc---C------CCCCEEEeeCchhh
Confidence 57899999999999899999999999999999642 1 12688999998754
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.10 E-value=0.36 Score=39.99 Aligned_cols=32 Identities=31% Similarity=0.815 Sum_probs=25.5
Q ss_pred CCCCcccccccccccccccccccccccCceecCCC
Q 009736 217 DSSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
......|..|+++..++ -..+|| ||.+||...
T Consensus 22 k~~~~rC~~C~kkvgl~--~~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 22 KKIMKHCFLCGKKTGLA--TSFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCCBCSSSCCBCSSS--SCEECT-TCCEECTTT
T ss_pred cccCccchhhCCeeccc--CCeEcC-CCCEecccC
Confidence 34467999999998863 468998 999998754
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=86.11 E-value=0.49 Score=37.19 Aligned_cols=29 Identities=34% Similarity=0.880 Sum_probs=23.4
Q ss_pred CCcccccccccccccccccccccccCceecCCC
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
....|..|+++..++ ..+|| ||..||...
T Consensus 14 ~~~rC~~C~kkvgl~---~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT---GFMCR-CGTTFCGSH 42 (64)
T ss_dssp SCCCCTTTCCCCCTT---CEECS-SSCEECTTT
T ss_pred cCCcChhhCCccCcc---CEEee-cCCEecccc
Confidence 357899999988853 58896 999998764
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.72 E-value=0.81 Score=36.91 Aligned_cols=30 Identities=37% Similarity=0.951 Sum_probs=24.0
Q ss_pred CCCcccccccccccccccccccccccCceecCCC
Q 009736 218 SSASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 218 ~~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
.....|..|+++..++ ..+|| ||..||...
T Consensus 23 ~~~~RC~~C~kkvgL~---~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT---GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCCBCSSSCCBCTTT---CEECT-TSCEECTTT
T ss_pred ccCccchhhcCccccc---ceEec-cCCEecccc
Confidence 3467899999998853 58895 999998754
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=84.85 E-value=0.85 Score=36.79 Aligned_cols=29 Identities=31% Similarity=0.930 Sum_probs=23.5
Q ss_pred CCcccccccccccccccccccccccCceecCCC
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
....|..|+++..++ ..+|| ||.+||...
T Consensus 24 ~~nRC~~CrKkvgL~---gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT---GFDCR-CGNLFCGLH 52 (74)
T ss_dssp CTTBCSSSCCBCGGG---CEECT-TSCEECSSS
T ss_pred cCCcChhhCCccccc---CeecC-CCCEechhc
Confidence 356899999998854 37899 999998754
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=78.54 E-value=1.4 Score=34.51 Aligned_cols=28 Identities=29% Similarity=0.867 Sum_probs=22.7
Q ss_pred CcccccccccccccccccccccccCceecCCC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGEC 251 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~C 251 (527)
...|..|++...++ ..+| .||..||...
T Consensus 15 ~~rC~~C~kkvgl~---~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM---GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS---CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccccc---CeEe-ecCCEecccC
Confidence 57899999988753 5889 5999998764
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.78 E-value=0.29 Score=37.86 Aligned_cols=32 Identities=22% Similarity=0.608 Sum_probs=25.9
Q ss_pred CcccccccccccccccccccccccCceecCCCCC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~ 253 (527)
...|..|+++|.. ..+..|..|+.+||-.|=-
T Consensus 15 ~~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD~ 46 (59)
T 1z60_A 15 ERFCYGCQGELKD--QHVYVCAVCQNVFCVDCDV 46 (59)
T ss_dssp CCEETTTTEECTT--SEEECCTTTTCCBCHHHHH
T ss_pred CCcccccCcccCC--CccEECCccCcCcccchhH
Confidence 3569999999963 2458899999999999853
No 23
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=76.21 E-value=2.6 Score=32.50 Aligned_cols=52 Identities=29% Similarity=0.757 Sum_probs=40.0
Q ss_pred CCcccccccc-cccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 219 SASACMLCGV-RFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 219 ~~~~C~~C~~-~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
+...|.+|.+ +|.- ---|.|..|-.-||..|.-+ .+| ..++-.-||+.|..+
T Consensus 8 d~~~C~iC~KTKFAD--G~Gh~C~yCk~r~CaRCGg~-v~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 8 DAPTCGICHKTKFAD--GCGHNCSYCQTKFCARCGGR-VSL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCCCCSSSSCSCCCS--SCCEEBTTTCCEECTTSEEE-EES----STTCEEEEEHHHHHH
T ss_pred Ccchhhhhccceecc--CCCccccccCCeeecccCCE-eee----cCCeEEEEehhhhhc
Confidence 4678999997 4542 35689999999999999854 444 256788899999764
No 24
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.63 E-value=0.52 Score=34.86 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=27.3
Q ss_pred CCcccCCCCcccccccccccccc-cccccccccCcee
Q 009736 212 PRWLADSSASACMLCGVRFHPIM-CSRHHCRFCGGIF 247 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~-~RrHHCR~CG~if 247 (527)
+.|+.- ....|..|++.|.++. .|+|-|..||..+
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 466654 6789999999999532 4889999998875
No 25
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.53 E-value=1.8 Score=34.27 Aligned_cols=32 Identities=25% Similarity=0.651 Sum_probs=24.5
Q ss_pred CCCCcccccccccccccccc--cccccccCceecCCC
Q 009736 217 DSSASACMLCGVRFHPIMCS--RHHCRFCGGIFCGEC 251 (527)
Q Consensus 217 d~~~~~C~~C~~~F~~~~~R--rHHCR~CG~ifC~~C 251 (527)
......|..|++.-.+. . -.+| .||.+||...
T Consensus 12 ~~~~~rC~~C~kk~gL~--~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLELV--QQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCTTBCSSSCCBCCHH--HHHHHCC-SSSCCCCTTT
T ss_pred CccCCcchhhCCeeccc--ccCceEe-cCCCEehhcc
Confidence 33467999999998853 3 3789 7999998754
No 26
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.25 E-value=1.9 Score=34.42 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=20.3
Q ss_pred CcccccccccccccccccccccccCc-ee
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG-IF 247 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~-if 247 (527)
.-.|..|+..|.+...-.-||+.||. |+
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 35799999999864334567888887 54
No 27
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=59.48 E-value=5.1 Score=28.78 Aligned_cols=50 Identities=20% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
....|.+|...|..- .+......||++||..|....... ...|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-RVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCTT-TSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSS
T ss_pred CCCcCcccChhhcCC-CcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcC
Confidence 356899999988531 234455679999999998654321 15566665443
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=53.01 E-value=3.3 Score=34.28 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=33.3
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
..|.+|...|. ....|-.||++||..|......-. ...|-.|...+
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP~Cr~~~ 68 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTEQ--------RAQCPHCRAPL 68 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHHT--------CSBCTTTCCBC
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHHC--------cCCCCCCCCcC
Confidence 46999998775 345668999999999987543221 16788888765
No 29
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=52.95 E-value=8.3 Score=31.55 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=36.5
Q ss_pred cccccccccccccccccccccccCce-----ecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~i-----fC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
..|+.|+.+...- .+.+||..|++- ||..|-..-..++. -+ ....-|..|...++.
T Consensus 3 ~~CP~C~~~l~~~-~~~~~C~~C~~~~~~~afCPeCgq~Le~lkA--CG-A~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALERN-GDTAHCETCAKDFSLQALCPDCRQPLQVLKA--CG-AVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCEEC-SSEEECTTTCCEEEEEEECSSSCSCCCEEEE--TT-EEEECCTTTTCCCCT
T ss_pred CCCCCCCCccccC-CCceECccccccCCCcccCcchhhHHHHHHh--cC-CcCeeeccCCCEeec
Confidence 4688888887753 567778888864 78888764433421 11 136678888877654
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=52.61 E-value=7.9 Score=27.75 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=30.6
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
...|.+|...|..- ..-.....||++||..|..... +....|-.|...
T Consensus 5 ~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWL---------GSHSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTT---------TTCCSCSSSCCC
T ss_pred CCcCccCCccccCC-CceEECCCCCCcccHHHHHHHH---------HcCCcCcCCCCE
Confidence 46799999988741 1222233699999999975432 113457777543
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=50.96 E-value=5.8 Score=30.72 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=35.5
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|..|...|.-- .. -.||++||..|......-.. ........|-.|...+..
T Consensus 12 ~~~C~IC~~~~~~p--~~---l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP--LS---LDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC--CC---CSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe--eE---CCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCCH
Confidence 46799999988632 11 26999999999876543211 111346688888877643
No 32
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=49.97 E-value=6 Score=29.82 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=18.7
Q ss_pred ccccccccccccc-----------ccccccccccCceec
Q 009736 221 SACMLCGVRFHPI-----------MCSRHHCRFCGGIFC 248 (527)
Q Consensus 221 ~~C~~C~~~F~~~-----------~~RrHHCR~CG~ifC 248 (527)
-.|..|++.|... ..|.+.|..||+.|-
T Consensus 5 y~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred ccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 3688888888631 135667777777764
No 33
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.83 E-value=6 Score=30.58 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=34.3
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
+...|.+|...|.. ......-.||++||..|....... ...|-.|...+.
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLKA---------NRTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHHH---------CSSCTTTCCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHHc---------CCcCcCcCCcCC
Confidence 45789999998873 234445569999999998755321 246888865543
No 34
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.04 E-value=13 Score=28.76 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=34.0
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
....|.+|...|..- ....--.||++||..|...... ..+.|-.|...+..
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 14 SGLECPVCKEDYALG--ESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSCCCTTTTSCCCTT--SCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCCC
T ss_pred CCCCCeeCCccccCC--CCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccCC
Confidence 356899999988631 2222235999999999875431 12578888876644
No 35
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.52 E-value=12 Score=27.34 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCC
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~ 254 (527)
+...|.+|...|..- + --.||+.||..|...
T Consensus 5 ~~~~C~IC~~~~~~p--~---~l~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP--K---LLPCLHTLCSGCLEA 35 (56)
T ss_dssp CCSSCSSSCSSCBCC--S---CSTTSCCSBTTTCSS
T ss_pred cCCCceEeCCccCCe--E---EcCCCCcccHHHHcc
Confidence 356799999887631 2 236999999999754
No 36
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.22 E-value=9.8 Score=30.89 Aligned_cols=32 Identities=25% Similarity=0.571 Sum_probs=23.3
Q ss_pred cccccccccccc-ccccccccccCceecCCCCC
Q 009736 222 ACMLCGVRFHPI-MCSRHHCRFCGGIFCGECSK 253 (527)
Q Consensus 222 ~C~~C~~~F~~~-~~RrHHCR~CG~ifC~~CS~ 253 (527)
-|+.|+..|..- ..++..|..||..||..|-.
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 477788765321 13457899999999999975
No 37
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=45.20 E-value=6.2 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=21.7
Q ss_pred Cccccccccc-ccccccccccccccCceecCCCC
Q 009736 220 ASACMLCGVR-FHPIMCSRHHCRFCGGIFCGECS 252 (527)
Q Consensus 220 ~~~C~~C~~~-F~~~~~RrHHCR~CG~ifC~~CS 252 (527)
...|+.|++. +.-.....+||+.||++|-..--
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy 93 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSY 93 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCSS
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECCCc
Confidence 4679999972 21111235899999999866543
No 38
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=44.90 E-value=10 Score=28.58 Aligned_cols=51 Identities=16% Similarity=0.410 Sum_probs=34.2
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
....|.+|...|.. ......-.||++||..|....... ...|-.|...+..
T Consensus 13 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 35689999988852 233444569999999998654321 2348888766544
No 39
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.33 E-value=16 Score=27.94 Aligned_cols=35 Identities=29% Similarity=0.617 Sum_probs=26.3
Q ss_pred Ccccccccccccccc-cccccccc--cCceecCCCCCC
Q 009736 220 ASACMLCGVRFHPIM-CSRHHCRF--CGGIFCGECSKG 254 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~-~RrHHCR~--CG~ifC~~CS~~ 254 (527)
...|+.|+...-... .-+-.|+. ||..||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 568999998776431 23456998 999999999864
No 40
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.05 E-value=15 Score=29.51 Aligned_cols=13 Identities=31% Similarity=0.835 Sum_probs=9.8
Q ss_pred Ccccccccccccc
Q 009736 220 ASACMLCGVRFHP 232 (527)
Q Consensus 220 ~~~C~~C~~~F~~ 232 (527)
.-.|..|++.|..
T Consensus 28 ~h~C~~Cgk~F~~ 40 (85)
T 2lv2_A 28 CHLCPVCGESFAS 40 (85)
T ss_dssp TEECTTSCCEESS
T ss_pred CEECCCCCCCcCc
Confidence 4578888888873
No 41
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=43.73 E-value=7.7 Score=30.98 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=33.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|-.+|+.--.+-.-| .||+.||..|..... ......|-.|-..+..
T Consensus 11 ~~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~--------~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIR--------TDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHT--------TSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcccccccccc-CCCCCcCHHHHHHHH--------hcCCCCCCCCCCccCC
Confidence 467999999886311112224 599999999975321 1134678888876544
No 42
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.88 E-value=11 Score=29.88 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=40.0
Q ss_pred CCCCcccCCCCccccccccccccc---------ccc-cccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 210 EPPRWLADSSASACMLCGVRFHPI---------MCS-RHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 210 ~~p~Wv~d~~~~~C~~C~~~F~~~---------~~R-rHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
..+.|.-|.+...|.+|...|... ... ...-..||++|+..|...... ....|-.|...+.
T Consensus 5 ~~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 5 SSGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---------TCCBCTTTCCBCC
T ss_pred eeEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---------hCCCCCCcCCCcc
Confidence 346788888889999999999531 001 112235999999999765421 1247888876543
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.98 E-value=8 Score=32.75 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=29.0
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
-.|.+|...|.- -.--..||++||..|...... ..|-.|...+
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~ 65 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPA 65 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBC
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcC
Confidence 569999886642 122227999999999865321 5688887654
No 44
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.02 E-value=18 Score=26.94 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.4
Q ss_pred Ccccccccccccc
Q 009736 220 ASACMLCGVRFHP 232 (527)
Q Consensus 220 ~~~C~~C~~~F~~ 232 (527)
.-.|..|++.|..
T Consensus 17 ~~~C~~C~k~f~~ 29 (74)
T 2lce_A 17 PYKCDRCQASFRY 29 (74)
T ss_dssp SBCCTTSSCCBSC
T ss_pred CeECCCCCceeCC
Confidence 4679999999973
No 45
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=41.01 E-value=11 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=31.6
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
...|.+|...|.- ...-..||++||..|......- ...+.|-.|...+
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 15 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 62 (74)
T ss_dssp GGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCSS
T ss_pred CCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCcC
Confidence 4579999887753 2223449999999998654321 1245788887643
No 46
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.38 E-value=16 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.632 Sum_probs=20.4
Q ss_pred Cccccc--ccccccccccccccccccCceecCC
Q 009736 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (527)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~ifC~~ 250 (527)
...|.. |.+. .+ -..+|+.|+..||..
T Consensus 12 ~~~Cs~~~Ck~~-~l---l~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-EM---MKLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-CS---SCCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-Cc---cceECCCCCcccCcc
Confidence 467887 9986 33 246999999999853
No 47
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=40.17 E-value=13 Score=27.87 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=33.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|..|...|.. ....-.||++||..|...... ....|..|...+..
T Consensus 5 ~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 5689999988752 123456999999999865421 12478888776654
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=39.41 E-value=7.3 Score=32.75 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=33.1
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|...|.-- . --.||+.||..|...... .....|-.|...+..
T Consensus 15 ~~~C~iC~~~~~~p--~---~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP--V---TLPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC--E---ECTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCce--e---EcCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 35799999877631 1 127999999999875431 123679999877654
No 49
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.61 E-value=10 Score=29.86 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=34.7
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|..|...|..- .+.-.--.||++||..|......- ......|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTEE-QLRPKLLHCGHTICRQCLEKLLAS------SINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCTT-SSCEEECSSSCEEEHHHHHHHHHH------CSSCBCCTTTCCCBC
T ss_pred CCCCccCCcccccc-CCCeEECCCCChhhHHHHHHHHHc------CCCCcCCCCCCCccc
Confidence 46799999988742 221223379999999998754322 123567888876543
No 50
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=37.89 E-value=14 Score=25.86 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.1
Q ss_pred cccccccccccc
Q 009736 221 SACMLCGVRFHP 232 (527)
Q Consensus 221 ~~C~~C~~~F~~ 232 (527)
-.|..|++.|..
T Consensus 5 ~~C~~C~~~f~~ 16 (57)
T 3uk3_C 5 RECSYCGKFFRS 16 (57)
T ss_dssp CBCTTTCCBCSC
T ss_pred ccCCCCcchhCC
Confidence 468888888863
No 51
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.11 E-value=15 Score=28.43 Aligned_cols=53 Identities=21% Similarity=0.478 Sum_probs=34.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|..|...|.-- .. -.||++||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p--~~---~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQP--LS---LDCGHSFCQACLTANHKKSM---LDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSC--BC---CSSSCCBCTTHHHHHHHHHH---HTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCc--ee---CCCCCHHHHHHHHHHHHHhh---cCCCCCcCCCCCCccCH
Confidence 46799999987632 11 26999999999865432210 01235678888876643
No 52
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.70 E-value=19 Score=25.13 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=8.0
Q ss_pred cccccccccc
Q 009736 222 ACMLCGVRFH 231 (527)
Q Consensus 222 ~C~~C~~~F~ 231 (527)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 5888888886
No 53
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.03 E-value=11 Score=28.00 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=23.4
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCee
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRS 256 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~ 256 (527)
...|.+|...|.-- .. -.||++||..|.....
T Consensus 20 ~~~C~IC~~~~~~p--~~---~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 20 EVICPICLDILQKP--VT---IDCGHNFCLKCITQIG 51 (63)
T ss_dssp CCBCTTTCSBCSSC--EE---CTTSSEECHHHHHHHH
T ss_pred CCCCCcCCchhCCe--EE---eCCCCcchHHHHHHHH
Confidence 46799999877632 11 2799999999986543
No 54
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=35.99 E-value=12 Score=28.53 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.2
Q ss_pred CcccccccccccccccccccccccC
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCG 244 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG 244 (527)
...|+.|...... |-..||.||
T Consensus 19 k~ICrkC~ARnp~---~A~~CRKCg 40 (56)
T 2ayj_A 19 KKVCRKCGALNPI---RATKCRRCH 40 (56)
T ss_dssp CEEETTTCCEECT---TCSSCTTTC
T ss_pred hhhhccccCcCCc---ccccccCCC
Confidence 4679999998873 889999887
No 55
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.66 E-value=15 Score=28.06 Aligned_cols=48 Identities=17% Similarity=0.360 Sum_probs=33.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|...|.- ...-..||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFY---------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHH---------HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHH---------cCCcCCCcCcccCc
Confidence 4679999887752 223347999999999865432 13578888776654
No 56
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=35.53 E-value=19 Score=25.49 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=7.9
Q ss_pred cccccccccc
Q 009736 222 ACMLCGVRFH 231 (527)
Q Consensus 222 ~C~~C~~~F~ 231 (527)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5888888886
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=34.80 E-value=8.9 Score=34.42 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=33.5
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
..|.+|...|.- ...+..||++||..|...... .....|-.|...+..
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALR--------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHH--------TTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHH--------hCcCCCCCCCCcCCC
Confidence 479999887652 233458999999999865432 124678889877643
No 58
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.25 E-value=12 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=33.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|.+|...|.-- .. -.||++||..|...... .......|-.|...+.
T Consensus 20 ~~~C~IC~~~~~~~--~~---~~CgH~fC~~Ci~~~~~------~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQKP--VT---IDCGHNFCLKCITQIGE------TSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSSE--EE---CTTCCEEEHHHHHHHCS------SSCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCCe--EE---cCCCChhhHHHHHHHHH------cCCCCCCCCCCCCcCC
Confidence 46899999977632 11 27999999999875432 1124567888876654
No 59
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.43 E-value=11 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=16.4
Q ss_pred cccccccccccccc--------cccccccccCceec
Q 009736 221 SACMLCGVRFHPIM--------CSRHHCRFCGGIFC 248 (527)
Q Consensus 221 ~~C~~C~~~F~~~~--------~RrHHCR~CG~ifC 248 (527)
-.|..|++.|.... .+.+.|..||+.|-
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 46888888886310 23345666666553
No 60
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.35 E-value=6.5 Score=29.84 Aligned_cols=46 Identities=22% Similarity=0.506 Sum_probs=33.3
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|...|.. .--.||++||..|...... ....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWSD---------RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSSC---------CCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHHH---------CcCcCCCcCCcccC
Confidence 5689999987753 3356999999999864321 35679899877654
No 61
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.80 E-value=12 Score=28.57 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
+...|.+|...|..- . --.||++||..|...... ....|-.|...+.
T Consensus 14 ~~~~C~IC~~~~~~~----~-~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP----V-SLPCKHVFCYLCVKGASW---------LGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE----E-EETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC----E-EccCCCHHHHHHHHHHHH---------CCCcCcCcCchhC
Confidence 346799999877531 1 126999999999764321 1257888877664
No 62
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=32.62 E-value=21 Score=27.85 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=18.2
Q ss_pred CcccccccccccccccccccccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
.-.|..|+..|.+-....-.|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 46799999999853223466777764
No 63
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=32.54 E-value=43 Score=26.88 Aligned_cols=27 Identities=37% Similarity=0.785 Sum_probs=20.6
Q ss_pred Cccccc--ccccccccccccccccccCceecCC
Q 009736 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (527)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~ifC~~ 250 (527)
...|.. |++. .+ -...|+.||++||..
T Consensus 14 g~~Cs~~~C~~~-df---lpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 14 GQHCQVQHCRQR-DF---LPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCSCTTTCCC-SC---CCEECTTTCCEECST
T ss_pred CCCcCcccCCCc-cc---eeeECcccCcCcCcc
Confidence 467887 9886 32 257899999999975
No 64
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=31.81 E-value=11 Score=30.60 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=31.3
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
..|..|...|.- ....-.||+.||..|...... ....|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVT 68 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCC
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCC
Confidence 479999887752 222347999999999865422 1257888876654
No 65
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=31.50 E-value=11 Score=31.30 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=32.8
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|...|.- ....-.||++||..|...... ....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID----ATTIIECLHSFCKTCIVRYLE---------TSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHT---------SCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC----cCEeCCCCChhhHHHHHHHHH---------hCCcCcCCCccccc
Confidence 3579999887652 233348999999999765421 12678888877654
No 66
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.45 E-value=18 Score=26.75 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=17.5
Q ss_pred Cccccccccc-ccccccccccccccCcee
Q 009736 220 ASACMLCGVR-FHPIMCSRHHCRFCGGIF 247 (527)
Q Consensus 220 ~~~C~~C~~~-F~~~~~RrHHCR~CG~if 247 (527)
...|+.|+.. |-.--..|++|..||.++
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4578888873 221113577888888764
No 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.18 E-value=21 Score=26.30 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|++.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 46777777776
No 68
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.84 E-value=21 Score=26.55 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=8.3
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|.+.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 46888888876
No 69
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=30.62 E-value=15 Score=30.07 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=21.7
Q ss_pred Ccccccccccc--cccccccccccccCceecCCCC
Q 009736 220 ASACMLCGVRF--HPIMCSRHHCRFCGGIFCGECS 252 (527)
Q Consensus 220 ~~~C~~C~~~F--~~~~~RrHHCR~CG~ifC~~CS 252 (527)
...|+.|+..- .. .....+|+.||..|-..--
T Consensus 27 ~y~Cp~CG~~~v~r~-atGiW~C~~Cg~~~aggay 60 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQ-GTGIWQCSYCDYKFTGGSY 60 (83)
T ss_dssp CEECSSSCCEEEEEE-ETTEEEETTTCCEEECCSS
T ss_pred cCcCCCCCCcceecc-CCCeEECCCCCCEecCCEe
Confidence 35799999842 22 1356889999998876543
No 70
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=30.51 E-value=11 Score=28.38 Aligned_cols=52 Identities=19% Similarity=0.555 Sum_probs=34.1
Q ss_pred CCcccccccccccccc--cccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~--~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
+...|..|...|..-. .+......||++||..|...... ....|-.|...+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH---------HCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH---------cCCCCCCCCCccC
Confidence 3568999999886310 12224568999999999875432 1246888876654
No 71
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.03 E-value=16 Score=27.84 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=33.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|.+|...|..- ....--.||++||..|....... .+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~C~H~f~~~Ci~~~~~~---------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPR--DELGICPCKHAFHRKCLIKWLEV---------RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSS--SCEEEETTTEEEEHHHHHHHHHH---------CSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCCC--CcEEEcCCCCEecHHHHHHHHHc---------CCcCCCcCccccc
Confidence 46899999988631 22211259999999998754321 2378888776544
No 72
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=29.96 E-value=8.9 Score=32.03 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=35.0
Q ss_pred Ccccccccccccccc-------------cccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIM-------------CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~-------------~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|.+|...|..-. ...-..-.||++||..|........ .......|-.|...+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccC
Confidence 358999999885310 0011135699999999987654221 1134568888876553
No 73
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.91 E-value=21 Score=25.10 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.8
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|.+.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 46888988886
No 74
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=29.64 E-value=12 Score=31.75 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=32.1
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
..|.+|...|.-- .--.||+.||..|...... .....|-.|...+..
T Consensus 53 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP-----ITTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc-----EEeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCCC
Confidence 4799999877631 1127999999999865432 134578888876543
No 75
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.73 E-value=16 Score=30.14 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=31.0
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
..|..|...|.-- . --.||++||..|....... ......|-.|...+.
T Consensus 22 ~~C~IC~~~~~~p--~---~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP--V---STKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC--C---BCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe--E---ECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcCC
Confidence 3699998877531 1 1379999999998654321 112357888876543
No 76
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=28.30 E-value=19 Score=27.74 Aligned_cols=20 Identities=30% Similarity=0.743 Sum_probs=14.7
Q ss_pred Cccccccccccccccccccc-ccccC
Q 009736 220 ASACMLCGVRFHPIMCSRHH-CRFCG 244 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHH-CR~CG 244 (527)
...|..|+. + .+.|| |..||
T Consensus 30 l~~c~~cGe----~-~~~H~vc~~CG 50 (60)
T 3v2d_5 30 LVPCPECKA----M-KPPHTVCPECG 50 (60)
T ss_dssp CEECTTTCC----E-ECTTSCCTTTC
T ss_pred eeECCCCCC----e-ecceEEcCCCC
Confidence 467999998 3 46666 88887
No 77
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.26 E-value=5.1 Score=30.21 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=32.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhcc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQS 280 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~ 280 (527)
...|..|...|.-- .. -.||++||..|...... .....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~p-~~----~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQ----TECGHRFCESCMAALLS--------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSC-CC----CSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCe-eE----CCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCCh
Confidence 46799999877532 11 48999999999865431 234568888766543
No 78
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.95 E-value=11 Score=27.56 Aligned_cols=51 Identities=20% Similarity=0.555 Sum_probs=32.9
Q ss_pred Ccccccccccccccc--cccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~--~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|..|...|..-. .+.-....||++||..|...... ....|-.|...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKIN 55 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH---------HCSBCTTTCCBCT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH---------cCCCCCCCCccCC
Confidence 457999998876310 12224568999999999865422 1346777776554
No 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.87 E-value=19 Score=29.15 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=9.0
Q ss_pred cccccccccc-c
Q 009736 221 SACMLCGVRF-H 231 (527)
Q Consensus 221 ~~C~~C~~~F-~ 231 (527)
-.|..|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4789999999 5
No 80
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.85 E-value=58 Score=24.23 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=10.0
Q ss_pred CCccccccccccc
Q 009736 219 SASACMLCGVRFH 231 (527)
Q Consensus 219 ~~~~C~~C~~~F~ 231 (527)
..-.|..|++.|.
T Consensus 17 ~~~~C~~C~~~f~ 29 (77)
T 2cot_A 17 RRYKCDECGKSFS 29 (77)
T ss_dssp CSSBCSSSCCBCS
T ss_pred CCEECCCCCcccC
Confidence 3457889999886
No 81
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.69 E-value=25 Score=25.13 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=22.9
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCe
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGR 255 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~ 255 (527)
...|.+|...|..- .. -.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p--~~---~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP--VI---IECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC--CC---CSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc--Ee---CCCCCccCHHHHHHH
Confidence 46799999887632 11 369999999997654
No 82
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=27.46 E-value=25 Score=28.14 Aligned_cols=28 Identities=21% Similarity=0.616 Sum_probs=19.2
Q ss_pred Cccccccccccccccccc----ccccccCceecCC
Q 009736 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~ifC~~ 250 (527)
...|+.|++. . + +|. -||+.||+.|=..
T Consensus 26 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 57 (72)
T 3jyw_9 26 RYDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAGG 57 (72)
T ss_dssp CBCCSSCCSS-C-B-SBCSSSCBCCSSSCCCCCCS
T ss_pred CccCCCCCCc-e-e-EecCCCeEECCCCCCEEeCC
Confidence 4579999974 3 2 343 5899998887543
No 83
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.41 E-value=19 Score=28.05 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=31.3
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|.+|...|.-- .--.||++||..|...... ....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQNP-----VVTKCRHYFCESCALEHFR---------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCSE-----EECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcCe-----eEccCCCHhHHHHHHHHHH---------CCCcCCCcCcccc
Confidence 45799998877531 1247999999999865432 1446877876553
No 84
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.35 E-value=19 Score=26.72 Aligned_cols=51 Identities=20% Similarity=0.548 Sum_probs=32.7
Q ss_pred CCcccccccccccccc--cccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 219 SASACMLCGVRFHPIM--CSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~--~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
+...|.+|...|..-. .+.-.-..||++||..|....... ...|-.|...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPTCRKKI 66 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTTTCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCCCCCcc
Confidence 3568999999886310 122245689999999998654321 34677776554
No 85
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.30 E-value=17 Score=29.45 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=32.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcc--hhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDV--CCVR 277 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~--C~~~ 277 (527)
...|.+|-..|.. ..-..-..||+.||..|.......-.. .+....-.|-. |...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCC
Confidence 4579999887752 122222469999999998765433111 11112346766 7665
No 86
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.24 E-value=25 Score=28.96 Aligned_cols=27 Identities=22% Similarity=0.583 Sum_probs=20.2
Q ss_pred Cccccc--ccccccccccccccccccCceecCC
Q 009736 220 ASACML--CGVRFHPIMCSRHHCRFCGGIFCGE 250 (527)
Q Consensus 220 ~~~C~~--C~~~F~~~~~RrHHCR~CG~ifC~~ 250 (527)
...|.. |++. .+ -..+|+.||..||..
T Consensus 25 ~~~C~~~~Ck~~-~~---l~f~C~~C~~~FC~~ 53 (86)
T 1wfe_A 25 SYSCSFKGCTDV-EL---VAVICPYCEKNFCLR 53 (86)
T ss_dssp CEECCSTTCCCE-ES---SCEECTTTCCEECGG
T ss_pred CCCCCCcCCCCC-Cc---cceECCCCCcccccc
Confidence 467887 9886 32 246899999999864
No 87
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=27.02 E-value=16 Score=29.17 Aligned_cols=48 Identities=21% Similarity=0.534 Sum_probs=31.2
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
.-.|.+|...|.- -..-..||+.||..|......- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 4679999987752 2223349999999998654321 1235788887654
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.94 E-value=24 Score=29.80 Aligned_cols=32 Identities=25% Similarity=0.704 Sum_probs=23.6
Q ss_pred cccccccccccccccccccccccCce-----ecCCCCC
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGI-----FCGECSK 253 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~i-----fC~~CS~ 253 (527)
..|+.|+++...- ...+||..|.+- +|..|-.
T Consensus 33 ~~CP~Cq~eL~~~-g~~~hC~~C~~~f~~~a~CPdC~q 69 (101)
T 2jne_A 33 LHCPQCQHVLDQD-NGHARCRSCGEFIEMKALCPDCHQ 69 (101)
T ss_dssp CBCSSSCSBEEEE-TTEEEETTTCCEEEEEEECTTTCS
T ss_pred ccCccCCCcceec-CCEEECccccchhhccccCcchhh
Confidence 5899999988753 467778888864 5666654
No 89
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.61 E-value=21 Score=29.28 Aligned_cols=29 Identities=28% Similarity=0.787 Sum_probs=20.4
Q ss_pred Cccccccccccccccccc----ccccccCceecCCC
Q 009736 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~ifC~~C 251 (527)
...|+.|++. . + +|. -||+.||+.|=..-
T Consensus 35 ky~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 35 KHTCPVCGRK-A-V-KRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp CBCCSSSCSS-C-E-EEEETTEEEETTTCCEEECCS
T ss_pred ccCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeCCc
Confidence 3579999985 3 2 343 58999999886543
No 90
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=26.58 E-value=15 Score=31.74 Aligned_cols=56 Identities=20% Similarity=0.494 Sum_probs=6.4
Q ss_pred CCcccCCCCccccccccccccccc----------ccccc----cccCceecCCCCCCeeeccccCCCCCceeeCcchhhh
Q 009736 212 PRWLADSSASACMLCGVRFHPIMC----------SRHHC----RFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVR 277 (527)
Q Consensus 212 p~Wv~d~~~~~C~~C~~~F~~~~~----------RrHHC----R~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~ 277 (527)
+.|.-|-..+.|.+|...|... . ....| -.||.+|+..|....+.. ..+|..|-..
T Consensus 40 a~w~wd~~~d~CaICl~~~~~~-c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP~Cr~~ 109 (117)
T 4a0k_B 40 ALWAWDIVVDNCAICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCPLDNRE 109 (117)
T ss_dssp EEEEECCCC-----------------------------------------------------------------------
T ss_pred EEEeecCCCCcCeECChhhcCc-ChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCCCCCCe
Confidence 4677777789999999998631 0 01122 269999999998765321 3567777654
No 91
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=25.89 E-value=25 Score=29.35 Aligned_cols=29 Identities=24% Similarity=0.612 Sum_probs=20.2
Q ss_pred Cccccccccccccccccc----ccccccCceecCCC
Q 009736 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~ifC~~C 251 (527)
...|+.|++. . + .|. -||+.||+.|-..-
T Consensus 36 ky~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 36 KYFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp CBCCTTTCSS-C-B-EEEETTEEECSSSCCEEECCS
T ss_pred cccCcccCCC-e-e-EecCcceEEcCCCCCEEeCCc
Confidence 3579999985 3 2 343 58999998886544
No 92
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=25.72 E-value=15 Score=29.57 Aligned_cols=49 Identities=16% Similarity=0.303 Sum_probs=32.7
Q ss_pred CCcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhh
Q 009736 219 SASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRL 278 (527)
Q Consensus 219 ~~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L 278 (527)
....|.+|...|.. ......-.||++||..|...... ....|-.|...+
T Consensus 39 ~~~~C~IC~~~~~~--~~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYVK--GDVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECCT--TCEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBS
T ss_pred CCCCCcccChhhcC--CCcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccC
Confidence 35679999998864 12233345999999999765431 124788887654
No 93
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.79 E-value=19 Score=28.83 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=9.1
Q ss_pred Cccccccccccc
Q 009736 220 ASACMLCGVRFH 231 (527)
Q Consensus 220 ~~~C~~C~~~F~ 231 (527)
.-.|..|++.|.
T Consensus 24 ~~~C~~C~k~f~ 35 (98)
T 2gqj_A 24 EAVCPTCNVVTR 35 (98)
T ss_dssp CCCCTTTCCCCS
T ss_pred CcCCCCCCCChh
Confidence 346888888887
No 94
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=24.43 E-value=18 Score=24.54 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=8.4
Q ss_pred ccccccccCce
Q 009736 236 SRHHCRFCGGI 246 (527)
Q Consensus 236 RrHHCR~CG~i 246 (527)
-+.|||.|-+-
T Consensus 8 ikqhcrfckkk 18 (37)
T 2elu_A 8 IKQHCRFCKKK 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred HHHHHHHHHHH
Confidence 47899999664
No 95
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=24.22 E-value=32 Score=24.72 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|++.|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 35778888776
No 96
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.01 E-value=29 Score=25.88 Aligned_cols=24 Identities=29% Similarity=0.675 Sum_probs=17.3
Q ss_pred CcccccccccccccccccccccccCce
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGI 246 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~i 246 (527)
...|+.|+..-. .+..+||.||..
T Consensus 14 k~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCEEC---TTCSSCSSSSSC
T ss_pred CccCCCCCCcCC---CCceecCCCCCc
Confidence 356888888732 477888888874
No 97
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.58 E-value=29 Score=23.52 Aligned_cols=11 Identities=45% Similarity=1.069 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 46888888886
No 98
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=23.51 E-value=30 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.600 Sum_probs=20.0
Q ss_pred Cccccccccccccccccc----ccccccCceecCCC
Q 009736 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGEC 251 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~ifC~~C 251 (527)
...|+.|++. . + .|. -||+.||+.|-..-
T Consensus 36 ky~CpfCgk~-~-v-kR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 36 RYDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp CCCCSSSCSS-C-C-EEEETTEEECTTTCCEEECCS
T ss_pred CCcCCCCCCc-e-e-eecccceEEcCCCCCEEeCCc
Confidence 3579999974 3 2 343 58999998886543
No 99
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.43 E-value=28 Score=27.89 Aligned_cols=28 Identities=25% Similarity=0.622 Sum_probs=19.3
Q ss_pred Cccccccccccccccccc----ccccccCceecCC
Q 009736 220 ASACMLCGVRFHPIMCSR----HHCRFCGGIFCGE 250 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~Rr----HHCR~CG~ifC~~ 250 (527)
...|+.|++. . + +|. -+|+.||+.|=..
T Consensus 27 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 27 KYKCPVCGFP-K-L-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred CccCCCCCCc-e-e-EEEEeEEEECCCCCcEEECC
Confidence 4679999873 3 2 343 6799999887554
No 100
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.38 E-value=32 Score=29.39 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.0
Q ss_pred cccccccccc
Q 009736 221 SACMLCGVRF 230 (527)
Q Consensus 221 ~~C~~C~~~F 230 (527)
..|..|+-.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 3577777777
No 101
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.31 E-value=42 Score=21.14 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 009736 510 AAAMLYHALEDLYQKLQ 526 (527)
Q Consensus 510 ~a~~L~~~L~~~~~~~~ 526 (527)
.|+.||+.|.++-+++.
T Consensus 2 nadelykeledlqerlr 18 (27)
T 3twe_A 2 NADELYKELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 36788888888877654
No 102
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=23.09 E-value=1e+02 Score=24.42 Aligned_cols=36 Identities=31% Similarity=0.684 Sum_probs=24.6
Q ss_pred CCCccccc--cccccccc-cccccccc-----ccCceecCCCCC
Q 009736 218 SSASACML--CGVRFHPI-MCSRHHCR-----FCGGIFCGECSK 253 (527)
Q Consensus 218 ~~~~~C~~--C~~~F~~~-~~RrHHCR-----~CG~ifC~~CS~ 253 (527)
....-|+. |+.....- ..++-.|. .||..||..|..
T Consensus 23 ~~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 23 MGGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp CSSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred CCcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 33556765 77654321 13667897 899999999975
No 103
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.05 E-value=28 Score=26.12 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 009736 221 SACMLCGVRFH 231 (527)
Q Consensus 221 ~~C~~C~~~F~ 231 (527)
-.|..|++.|.
T Consensus 8 ~~C~~C~k~f~ 18 (78)
T 2d9h_A 8 LQCEICGFTCR 18 (78)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 45777887775
No 104
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.88 E-value=28 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=14.7
Q ss_pred cccccccccccccccccccccccCc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGG 245 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ 245 (527)
-.|..|++.|... .....|..||.
T Consensus 133 y~C~~Cg~~~~~~-~~~~~Cp~CG~ 156 (165)
T 2lcq_A 133 YVCIGCGRKFSTL-PPGGVCPDCGS 156 (165)
T ss_dssp EEESSSCCEESSC-CGGGBCTTTCC
T ss_pred EECCCCCCcccCC-CCCCcCCCCCC
Confidence 4688888877743 23345666654
No 105
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.60 E-value=36 Score=28.11 Aligned_cols=31 Identities=29% Similarity=0.733 Sum_probs=23.1
Q ss_pred cccccccccccccccccccccccCceecCCCCCC
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKG 254 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~ 254 (527)
..|..|.. |+. .-..-||.|+++|=..|...
T Consensus 16 ~~C~VC~~-~t~--~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEV-WTA--ESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCC-CCS--SCCSSCSSSSSCCCHHHHHH
T ss_pred cccCcccc-ccc--cceeccccccccccHhhccc
Confidence 57888886 442 46778999999987777754
No 106
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.43 E-value=37 Score=25.39 Aligned_cols=12 Identities=33% Similarity=0.932 Sum_probs=8.7
Q ss_pred cccccccccccc
Q 009736 221 SACMLCGVRFHP 232 (527)
Q Consensus 221 ~~C~~C~~~F~~ 232 (527)
-.|..|++.|..
T Consensus 16 ~~C~~C~k~f~~ 27 (77)
T 2ct1_A 16 YECYICHARFTQ 27 (77)
T ss_dssp EECTTTCCEESC
T ss_pred eECCCcCchhCC
Confidence 468888888763
No 107
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=22.33 E-value=10 Score=39.60 Aligned_cols=48 Identities=17% Similarity=0.499 Sum_probs=33.4
Q ss_pred cccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhccc
Q 009736 221 SACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQSV 281 (527)
Q Consensus 221 ~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~~~ 281 (527)
..|..|...|.- ...-.||++||..|...... ...+.|-.|...+...
T Consensus 333 ~~C~ICle~~~~-----pv~lpCGH~FC~~Ci~~wl~--------~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDKD-----VKIEPCGHLMCTSCLTSWQE--------SEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBCC-----EEEETTCCEECHHHHHHHHH--------HTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCCC-----eEEeCCCChhhHHHHHHHHh--------cCCCCCCCCCCccCCc
Confidence 589999876642 34468999999999854321 1346788888776553
No 108
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.98 E-value=23 Score=27.29 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=34.0
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
...|..|...|..- .. -.||++||..|......-.. .......|-.|...+.
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 19 EVTCPICLELLKEP----VS-ADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTSCTTTCSCCSSC----EE-CTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCC
T ss_pred CCCCcCCChhhCcc----ee-CCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCC
Confidence 45799999877631 12 35999999999875433211 1223678888887654
No 109
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.82 E-value=41 Score=33.91 Aligned_cols=61 Identities=21% Similarity=0.460 Sum_probs=38.0
Q ss_pred Cccccccccccc--cc-------ccccccccccCc------eecCCCCCCeeeccc-cCCC------CC--ceeeCcchh
Q 009736 220 ASACMLCGVRFH--PI-------MCSRHHCRFCGG------IFCGECSKGRSLLPV-KFRV------SD--PQRVCDVCC 275 (527)
Q Consensus 220 ~~~C~~C~~~F~--~~-------~~RrHHCR~CG~------ifC~~CS~~~~~lP~-~~~~------~~--pvRVC~~C~ 275 (527)
...|+.|+..=. .+ ..|..||-.||. +-|..|-+.+ .+-. .+.. .. .+-+|+.|.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~-~l~y~~~e~~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK-HLAYLSLEHDGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS-CCEEECCCC-CCCSTTCSEEEEEETTTT
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC-CeeEEEecCccccCCCcceEEEEccccc
Confidence 468999997432 22 136789999985 4788887743 2211 1122 13 345999999
Q ss_pred hhhccc
Q 009736 276 VRLQSV 281 (527)
Q Consensus 276 ~~L~~~ 281 (527)
.-+..+
T Consensus 261 ~YlK~~ 266 (309)
T 2fiy_A 261 GYLKQF 266 (309)
T ss_dssp EEEEEE
T ss_pred chHhhh
Confidence 877553
No 110
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.47 E-value=30 Score=26.51 Aligned_cols=21 Identities=33% Similarity=0.727 Sum_probs=14.0
Q ss_pred Cccccccccccccccccccc-ccccCc
Q 009736 220 ASACMLCGVRFHPIMCSRHH-CRFCGG 245 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHH-CR~CG~ 245 (527)
...|..|+.. .+.|| |..||.
T Consensus 30 l~~c~~cG~~-----~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGK-----KLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCE-----ECTTBCCTTTCB
T ss_pred ceECCCCCCE-----eCCceEcCCCCc
Confidence 4578899983 24444 888873
No 111
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=21.42 E-value=25 Score=27.01 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=31.1
Q ss_pred CcccccccccccccccccccccccCceecCCCCCCeeeccccCCCCCceeeCcchhhhhc
Q 009736 220 ASACMLCGVRFHPIMCSRHHCRFCGGIFCGECSKGRSLLPVKFRVSDPQRVCDVCCVRLQ 279 (527)
Q Consensus 220 ~~~C~~C~~~F~~~~~RrHHCR~CG~ifC~~CS~~~~~lP~~~~~~~pvRVC~~C~~~L~ 279 (527)
.-.|..|...|.-- .--.||++||..|...... .....|-.|...+.
T Consensus 8 ~~~C~IC~~~~~~P-----v~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKDP-----VIVSTGQTYERSSIQKWLD--------AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSSE-----EEETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBCS
T ss_pred cCCCCCccccccCC-----EEcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCCC
Confidence 45799999877531 1237999999999765431 12456887876543
Done!