Query 009737
Match_columns 527
No_of_seqs 320 out of 2498
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 16:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00164 bifunctional dihydrof 100.0 4E-137 8E-142 1110.1 48.2 508 10-527 1-514 (514)
2 KOG0673 Thymidylate synthase [ 100.0 5E-106 1E-110 765.1 22.5 287 241-527 7-293 (293)
3 TIGR03284 thym_sym thymidylate 100.0 6.4E-98 1E-102 749.6 23.8 275 245-527 1-296 (296)
4 PRK13821 thyA thymidylate synt 100.0 2E-96 4E-101 744.6 24.4 280 244-527 1-323 (323)
5 PRK01827 thyA thymidylate synt 100.0 3.8E-93 8.3E-98 710.4 23.8 264 244-527 1-264 (264)
6 COG0207 ThyA Thymidylate synth 100.0 1.3E-91 2.9E-96 688.3 25.3 264 244-527 3-268 (268)
7 PF00303 Thymidylat_synt: Thym 100.0 3.1E-82 6.7E-87 638.7 20.2 269 244-527 1-269 (269)
8 cd00351 TS_Pyrimidine_HMase Th 100.0 2.8E-66 6.1E-71 506.7 18.6 214 246-480 1-215 (215)
9 PRK00956 thyA thymidylate synt 100.0 1E-45 2.2E-50 359.6 18.2 199 241-484 8-207 (208)
10 TIGR03283 thy_syn_methano thym 100.0 6.9E-44 1.5E-48 344.2 17.2 192 241-478 6-198 (199)
11 KOG1324 Dihydrofolate reductas 100.0 4E-43 8.6E-48 324.7 15.4 181 21-201 1-181 (190)
12 PF00186 DHFR_1: Dihydrofolate 100.0 1E-40 2.2E-45 312.6 18.2 159 23-200 1-161 (161)
13 PRK10769 folA dihydrofolate re 100.0 4.1E-39 8.9E-44 301.1 17.8 156 24-201 2-159 (159)
14 COG0262 FolA Dihydrofolate red 100.0 5E-36 1.1E-40 282.8 19.0 164 23-200 1-166 (167)
15 cd00209 DHFR Dihydrofolate red 100.0 1.1E-30 2.4E-35 244.3 18.9 158 24-199 1-158 (158)
16 PRK00478 scpA segregation and 100.0 1.6E-30 3.4E-35 281.8 17.2 155 24-203 2-156 (505)
17 PF01872 RibD_C: RibD C-termin 99.6 1.3E-15 2.9E-20 147.0 13.2 152 22-183 1-192 (200)
18 PRK05625 5-amino-6-(5-phosphor 99.4 7.1E-12 1.5E-16 123.0 18.4 165 21-201 2-216 (217)
19 TIGR00227 ribD_Cterm riboflavi 99.4 4.1E-12 8.8E-17 124.3 16.4 139 21-170 2-185 (216)
20 TIGR00326 eubact_ribD riboflav 99.3 7E-11 1.5E-15 123.9 14.8 140 16-165 135-308 (344)
21 PRK14059 hypothetical protein; 99.1 5.7E-09 1.2E-13 105.0 20.8 168 20-201 29-250 (251)
22 TIGR01508 rib_reduct_arch 2,5- 98.9 7.9E-08 1.7E-12 94.2 18.5 137 23-170 2-180 (210)
23 PRK14719 bifunctional RNAse/5- 98.7 1E-06 2.2E-11 93.0 19.5 136 20-165 138-316 (360)
24 COG1985 RibD Pyrimidine reduct 98.6 4.1E-06 8.9E-11 82.7 17.9 141 21-171 3-186 (218)
25 PRK10786 ribD bifunctional dia 98.5 3.3E-06 7.2E-11 89.6 16.0 138 17-164 142-327 (367)
26 PLN02807 diaminohydroxyphospho 97.8 0.00057 1.2E-08 73.0 15.2 133 19-165 173-346 (380)
27 PHA03370 virion protein US2; P 32.2 1.4E+02 0.0031 30.1 6.7 85 113-198 113-208 (269)
28 PRK00536 speE spermidine synth 26.4 38 0.00083 34.6 1.8 43 129-173 72-118 (262)
29 PF08353 DUF1727: Domain of un 25.9 1.3E+02 0.0027 26.8 4.7 85 24-137 22-108 (113)
No 1
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=3.6e-137 Score=1110.13 Aligned_cols=508 Identities=53% Similarity=0.926 Sum_probs=462.5
Q ss_pred cCCCccCCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccc------cCCCCCcEEEEccccccccCCCC
Q 009737 10 SNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT------SDAGKRNAVIMGRKTWESIPLEH 83 (527)
Q Consensus 10 ~~~~~~~~~~~mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~------~~p~~~~~vIMGRkTyeslp~~~ 83 (527)
|+++.+ ++++++|+|++.+|+||.+|+|||++|+||+||+++|+.+ ++|+++++|||||||||++|...
T Consensus 1 ~~~~~~-----~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~ 75 (514)
T PTZ00164 1 SEDYSS-----LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKF 75 (514)
T ss_pred Cccccc-----CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhc
Confidence 355555 6889999999999999999999999999999999999843 57888999999999999998555
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc
Q 009737 84 RPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI 163 (527)
Q Consensus 84 ~pl~~r~~iVlSrt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~ 163 (527)
+|||+|.+|||||+.... ...+++.+++|+++|++.+++.+ +.++||||||++||++||++++|||++||+|...+
T Consensus 76 rPLp~R~nIVLSr~~~~~-~~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~g 151 (514)
T PTZ00164 76 RPLKNRINVVLSRTLTEE-EADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEY 151 (514)
T ss_pred cccCCCeEEEEcCCCCcc-cCCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEecc
Confidence 899999999999987531 12356889999999999998742 35789999999999999999999999999997777
Q ss_pred cccccCCCCCCCCceeeeeecCceeCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChh
Q 009737 164 ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHE 243 (527)
Q Consensus 164 ~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (527)
+||+|||.++.+.|++++.+....++++.|+|.+|+|+...+.+. ........+.++.+..++...|+++|+.++++|+
T Consensus 152 eGD~~FP~~~~~~~~l~~~s~~~~~~~v~y~f~~y~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T PTZ00164 152 ECDVFFPKIPESFFIVAIVSQTFSTNGTSYDFVIYEKKNDDEEDL-LGKIFGQMKMTGRKKSPKEQLYKACPSLKIREHE 230 (514)
T ss_pred ccCccCCCCCchhcEEEEEEEeccCCCceEEEEEEeccCcchhcc-ccccccccccccccccccccccccCccccccCCc
Confidence 999999999888899887555556788899999999986444332 1111222223344444444567889999999999
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|..+.||||+||+++||+||||||+++||++||||++||++++||||||+|+||+++|++.|++||
T Consensus 231 ~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~~~~iW 310 (514)
T PTZ00164 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDKGVRIW 310 (514)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCCCceeeechhhHHHHHHHHHHHHhCCccHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccc
Q 009737 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~ 403 (527)
|+|++++|+++.+++++++|||||+||+|||+||+.|.+|+++|+|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 311 d~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~~d~~~ 390 (514)
T PTZ00164 311 EGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQ 390 (514)
T ss_pred CCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECHhHhcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009737 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|||||+++||+|++|+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 391 ~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 470 (514)
T PTZ00164 391 MALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQL 470 (514)
T ss_pred cCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+|+|+++|+|+||+++++|+||+++||+|+||+|||+||+||||
T Consensus 471 ~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~~p~i~~~~av 514 (514)
T PTZ00164 471 ERVPYPFPTLKLKREVENIEDFTIEDIEVIGYVPHPKIKMEMAV 514 (514)
T ss_pred cCCCCCCCeEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999998
No 2
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-106 Score=765.08 Aligned_cols=287 Identities=78% Similarity=1.348 Sum_probs=285.2
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
+++|.|||+++++||++|..+.||||+||+|+||.||||+|++.||+|||||++|+.+++|||||++|+||++.|.++|+
T Consensus 7 ~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~tfPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kgv 86 (293)
T KOG0673|consen 7 NHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDTFPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKGV 86 (293)
T ss_pred chhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhccccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccc
Q 009737 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~ 400 (527)
+|||+|++|+|||++|+..+++||+||+||+||||||++|.+|++||.++|+|||..||++||+||++||+||++|||.|
T Consensus 87 ~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~d 166 (293)
T KOG0673|consen 87 HIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPLD 166 (293)
T ss_pred eeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009737 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 401 ~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
+.+|++||||.++||+|.+|+|+|++||||.||.+|+||||++|++|++|||+.||++||+|+|++|+||||.+|+++++
T Consensus 167 l~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al~ 246 (293)
T KOG0673|consen 167 LGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDALQ 246 (293)
T ss_pred cccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 481 ~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+||.|+|++||+|.|++++++|+||+.+||+|+||+|||+|||+|||
T Consensus 247 ~Ql~r~PrpFPkl~i~~~~k~id~F~~~df~l~~y~php~I~M~Mav 293 (293)
T KOG0673|consen 247 EQLQRPPRPFPKLKINPEVKDIDDFQAEDFELVGYDPHPKIKMKMAV 293 (293)
T ss_pred HHHhcCCCCCCceeecccccccccccccceeeeccCCCCCccccccC
Confidence 99999999999999999999999999999999999999999999997
No 3
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=6.4e-98 Score=749.63 Aligned_cols=275 Identities=53% Similarity=0.937 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccccc
Q 009737 245 YLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (527)
Q Consensus 245 ~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd 324 (527)
+|||++|++||++|+.+.||||+||+|+||+||||||+++||++||||++||++++||||||+|+||+++|++.|++|||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhhcCC--------CC-------------CCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHh
Q 009737 325 GNASREYLDSVGL--------TD-------------REEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIK 383 (527)
Q Consensus 325 ~~~~~~~~~~~~~--------~~-------------~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk 383 (527)
+|+.++|+++.|+ ++ +++||+|++||+|||+|++. +|+++|||++||++||
T Consensus 81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk 152 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATP--------DGETIDQIKNVIEMIK 152 (296)
T ss_pred CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCC--------CCCchHHHHHHHHHHh
Confidence 9999999999765 12 33799999999999999763 3678999999999999
Q ss_pred cCCCCcceEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEE
Q 009737 384 NNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFI 463 (527)
Q Consensus 384 ~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~ 463 (527)
+||+|||+|+++|||.++++|+|||||.++||+|+||+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+
T Consensus 153 ~nP~sRR~iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~ 232 (296)
T TIGR03284 153 TNPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFV 232 (296)
T ss_pred cCCchhheEEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 464 HVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 464 ~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|+++|+|||+||++++++||+|+|+++|+|+|++++++|+||++|||+|+||+|||+||+||||
T Consensus 233 h~igdaHIY~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~ik~~~av 296 (296)
T TIGR03284 233 HTLGDAHLYSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV 296 (296)
T ss_pred EEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 4
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=2e-96 Score=744.58 Aligned_cols=280 Identities=37% Similarity=0.668 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||++||++||++|..+.||||+||+|+||+|+||||++|||+|||||++||++++|||||++|+||++.|++.|++||
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~gfPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCCCceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccch--hhHhhcCCCCCC-CCCCCCccccccccccccccccccCCC--------------------C-------Ccch
Q 009737 324 DGNASR--EYLDSVGLTDRE-EGDLGPVYGFQWRHFGARYTNMHADYS--------------------G-------QGFD 373 (527)
Q Consensus 324 d~~~~~--~~~~~~~~~~~~-~g~lG~~YG~~wR~~~~~~~~~~~~~~--------------------~-------~~~d 373 (527)
|+|+++ +|+++. +++ +||||++||+|||+|++ +..++.+|+ | +++|
T Consensus 81 d~~~~~~~~~~~~~---~~~~~gdLGpvYG~Qwr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iD 156 (323)
T PRK13821 81 DQNANENAQWLANP---YRQGVDDLGDVYGVQWRQWPG-YKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAID 156 (323)
T ss_pred CCcccccccccccc---ccccCCcccccceeeeeeccc-ccccccccccccccccccccccccccCCCCccccccccChh
Confidence 999865 687652 223 68999999999999987 433333332 3 4689
Q ss_pred HHHHHHHHHhcCCCCcceEEEecCcccccccCCCCceeEEEEEE--eCCeEEEEEEeecccccccccchHHHHHHHHHHH
Q 009737 374 QLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM--ANGELSCQMYQRSADMGLGVPFNIASYALLTCMI 451 (527)
Q Consensus 374 Ql~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v--~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~i 451 (527)
||++||++||+||+|||+|+++|||.++++|+|||||.++||+| ++|+|+|++||||+|+++|+|||+++|++|++||
T Consensus 157 Qi~~vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~mi 236 (323)
T PRK13821 157 QLRQCLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLV 236 (323)
T ss_pred HHHHHHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred HHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCC-----------CCCCcccCCeEEeCCCCCCC
Q 009737 452 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKK-----------DIDSFVAEDFKLIGYDPHQK 520 (527)
Q Consensus 452 A~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~-----------~~~d~~~~df~l~~Y~~~~~ 520 (527)
|++||+++|+|+|+++|+|||+||++++++||+|+|+++|+|+|+++++ +|+||++|||+|+||+|||+
T Consensus 237 A~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~~~~~~~~~~~~~~~i~d~~~dDf~l~~Y~~hp~ 316 (323)
T PRK13821 237 GRLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDRVPEYAKTGVYEPEWLEKIEPSDFSLVGYRHHEP 316 (323)
T ss_pred HHHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCCcccccccccccccchhcCCHhHeEEeCCCCCCC
Confidence 9999999999999999999999999999999999999999999998754 67799999999999999999
Q ss_pred CCccccC
Q 009737 521 IEMKMAV 527 (527)
Q Consensus 521 ik~~~av 527 (527)
|||||||
T Consensus 317 Ik~~~av 323 (323)
T PRK13821 317 LTAPMAV 323 (323)
T ss_pred ccccccC
Confidence 9999998
No 5
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=3.8e-93 Score=710.41 Aligned_cols=264 Identities=56% Similarity=0.999 Sum_probs=257.4
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|+.+.||||++|+++||+++||||+++||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHIW 80 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCChh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccc
Q 009737 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~ 403 (527)
|+|+ +++|++|++||+|||+|++. +++++|||++||++||+||+|||+|+++|||.++++
T Consensus 81 d~~~------------~~~g~lg~~YG~q~r~~~~~--------~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~~ 140 (264)
T PRK01827 81 DEWA------------DENGDLGPVYGKQWRSWPTP--------DGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELDK 140 (264)
T ss_pred hhcc------------ccCCccCCcchHHHhcCcCC--------CCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhhc
Confidence 9996 45799999999999999752 367799999999999999999999999999999999
Q ss_pred cCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009737 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+|||++|++++++||
T Consensus 141 ~~l~PC~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 220 (264)
T PRK01827 141 MALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQL 220 (264)
T ss_pred ccCCceEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+|+|+++|+|+||+++++|+||+++||+|+||+|||+||+||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~~~~~~Df~l~~Y~~~p~ik~~~av 264 (264)
T PRK01827 221 SREPRPLPKLVINPDIKSIFDFEFEDFELEGYDPHPAIKAPVAV 264 (264)
T ss_pred cCCCCCCCEEEECCCCCCcccCCHhHEEEeCCCCCCcCCccccC
Confidence 99999999999999999999999999999999999999999998
No 6
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-91 Score=688.31 Aligned_cols=264 Identities=54% Similarity=1.008 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
|+||++++++|+++|..+.||||+||+|+||++|+||+++ +||++|||++.||++++||+||++|.||++.|+++|++|
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 8999999999999998888999999999999999999999 699999999999999999999999999999999999999
Q ss_pred cccccchhhHhhcCCCCCCC-CCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccc
Q 009737 323 WDGNASREYLDSVGLTDREE-GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDL 401 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~-g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~ 401 (527)
||+|+ .++ ||+|++||+|||+|... +|+++|||.+||++||+||+|||+|+++|||.++
T Consensus 83 Wdew~------------~e~~Gdlg~vYg~q~r~~~~~--------~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~ 142 (268)
T COG0207 83 WDEWA------------DENYGDLGPVYGYQWRKWLRP--------DGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGEL 142 (268)
T ss_pred ccccc------------ccccCcccceeeEeeeeccCc--------CCCccHHHHHHHHHHhcCCcccceEEEecCcccc
Confidence 99998 355 99999999999999854 4789999999999999999999999999999999
Q ss_pred cccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHH
Q 009737 402 KLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (527)
Q Consensus 402 ~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~ 481 (527)
.+|+|||||.++||+|++|+|+|++||||||+++|+||||+||++|++|||++||+++|+|+|+++|||||+||+|++++
T Consensus 143 ~~m~l~PC~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ 222 (268)
T COG0207 143 DEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKE 222 (268)
T ss_pred ccccCCCcEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 482 ~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
||+|+|+++|+|+||++.++++||++|||+|+||+|||+||+||||
T Consensus 223 ql~R~p~~~pkl~in~~~~~~f~~~~~Df~l~~Y~~~~~ik~~~av 268 (268)
T COG0207 223 QLKREPRPLPKLVINPKDKDLFDFTFEDFELVGYDPHPAIKAPVAV 268 (268)
T ss_pred HhccCCCCCCeEEecCCccccccccccceEEECCCCCccccccccC
Confidence 9999999999999999778889999999999999999999999997
No 7
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=3.1e-82 Score=638.66 Aligned_cols=269 Identities=55% Similarity=0.982 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|++|+++|++||++|+.+.+|||++|+++||++++||++++||++|+|+++|+++++|++||++|++|+++|++++++||
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~iw 80 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKRFPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKIW 80 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS-SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HTT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCCCccccccccccchhHHHHHHHHHcCccHHHHHhhccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccc
Q 009737 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~ 403 (527)
|.|+.++| ++|++|++||.|||+|++.+ +| +.++|||++||++||+||+|||+++++|||.++++
T Consensus 81 d~~~~~~~---------~~g~~g~~YG~~~r~~~~~~-----~~-~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~~ 145 (269)
T PF00303_consen 81 DFWADKDY---------EEGDLGPAYGPRWRHWGAPY-----DY-GFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDDE 145 (269)
T ss_dssp HGGHSHHH---------HTTB-SSSHHHHHHHBTSTE-----TT-TSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGGG
T ss_pred cccccccc---------ccCcccCCCCceeeeccccc-----cC-CccHHHHHHHHHHHhcCCCchhheeeeCCHhHhcC
Confidence 99986554 36999999999999998754 34 68899999999999999999999999999999999
Q ss_pred cCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009737 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
++++|||..+||+||+|+|+|+++|||||+++|+|+|+++|++||++||+.||+++|+|+|+++|+|||++|+++|++||
T Consensus 146 ~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l 225 (269)
T PF00303_consen 146 MADPPCHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQL 225 (269)
T ss_dssp SSS--SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+|+|+++|+|+++++.++|+||+++||+|+||+|||+|||||||
T Consensus 226 ~~~~~~~p~l~~~~~~~~~~~~~~~d~~l~~Y~~~~~i~~~~av 269 (269)
T PF00303_consen 226 KREPYPFPKLEINPEKKSIDDFKPEDFKLEGYQPHPKIKFEMAV 269 (269)
T ss_dssp TS---S--EEEESSTHSSGGGH-GGGEEEES---SS--SSSSTE
T ss_pred hcCCCCCCEEEeCCCCCChhhCchhhEEEeCCCCCCCCCccccC
Confidence 99999999999999999999999999999999999999999997
No 8
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=2.8e-66 Score=506.67 Aligned_cols=214 Identities=61% Similarity=1.074 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHCCccc-cCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccccc
Q 009737 246 LYLRLVQDIISDGNLK-DDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (527)
Q Consensus 246 ~Yl~l~~~Il~~G~~~-~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd 324 (527)
+|++++++||++|..+ .+|||++|+++||++++||++++||++|+||++|+++++|++||++|++|+++|++++++|||
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw~ 80 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIWD 80 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccCccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCccccc
Confidence 5999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccccccc
Q 009737 325 GNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLM 404 (527)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~ 404 (527)
+|+ .++|++|++||.|||+|++. ++++|||++||++||+||+|||+++++|||.++.++
T Consensus 81 ~~~------------~~~g~~g~~YG~r~r~~~~~---------~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~ 139 (215)
T cd00351 81 EWA------------SKEGDLGYTYGFQWRHWGAP---------GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDLM 139 (215)
T ss_pred ccc------------ccCCCCCCChhhheeecCCC---------CCChHHHHHHHHHHhcCCCchheEEEecChhhcccc
Confidence 997 24699999999999999752 567999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009737 405 ALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 405 ~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
++||||..+||+|++|+|+|+++|||||+++|+|+|+++|++|++|||+.||+++|+|+|+++|+|||++|+++|+
T Consensus 140 ~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~ 215 (215)
T cd00351 140 ALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215 (215)
T ss_pred CCCCceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 9
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=1e-45 Score=359.60 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=172.9
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEe-CCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~d-l~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
....+.|..++++|+++|....+..|..++++.|..+..+ ++.+ +++-
T Consensus 8 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~i~~------------------------ 56 (208)
T PRK00956 8 KSVASAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITNPKLK-------SIPE------------------------ 56 (208)
T ss_pred CCHHHHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcCCccC-------CCCC------------------------
Confidence 4578899999999999999999888988999999999985 3322 1111
Q ss_pred ccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcc
Q 009737 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~ 399 (527)
..-|+.|+.++|.+++ ++ .+.+.+|++||.|||+|++ ..|||++||++|+++|+|||+++++|||.
T Consensus 57 ~~~~~~~~~~~y~~~~-~~-g~~~~~~~~YG~r~r~~~~------------~~dQi~~vI~~L~~~p~sRR~i~~~w~p~ 122 (208)
T PRK00956 57 KYPLGEEALEEYTKQL-LS-GSAQGFVYTYGERLREYPG------------EVDQIDYIIEKLKENKNSRRATAVTWNPY 122 (208)
T ss_pred CCCcchHHHHHHHHhc-cC-CccCccCCCHHHHHhcCCC------------hhHHHHHHHHHHhcCCCchheEEEEeCch
Confidence 1235556556666553 21 2345599999999999963 25999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009737 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||+.+|+++|+|+|+++|+|||++|+++|
T Consensus 123 ~d~~~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v 202 (208)
T PRK00956 123 IDTKVDEVPCLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYL 202 (208)
T ss_pred hhhhcCCCCCeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHH
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh
Q 009737 480 EEQLQ 484 (527)
Q Consensus 480 ~~~l~ 484 (527)
+++|+
T Consensus 203 ~~~l~ 207 (208)
T PRK00956 203 EKIFK 207 (208)
T ss_pred HHHhc
Confidence 99985
No 10
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=6.9e-44 Score=344.23 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=161.7
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEe-CCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~d-l~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
....+.|..++++|+++|..+.++.|..++++.|..+++. ++.+ +++- ...| ..+.|+
T Consensus 6 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~~~~-----~~~~------~~~~l~--- 64 (199)
T TIGR03283 6 RSIAQAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENPGPE-------KIPE-----GYPL------DEEKLE--- 64 (199)
T ss_pred CCHHHHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCCccc-------CcCc-----cCcc------cHHHHH---
Confidence 3568899999999999999999888999999999999985 4333 1111 1111 111222
Q ss_pred ccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcc
Q 009737 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~ 399 (527)
+|.+.+ +. .++..++..||.|||.|. ++|||++||++||++|+|||+++++|||.
T Consensus 65 ----------~Y~~~l-l~-~~~~~~~y~YG~r~r~~~-------------g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~ 119 (199)
T TIGR03283 65 ----------EYEKQL-LD-PERQGFVYTYGNRLRRYF-------------GIDQIDYIIERLNQSPNSRRAIAITWDPP 119 (199)
T ss_pred ----------HHHHHH-cC-CCcCCCCcCHHHHHHcCC-------------ChhHHHHHHHHHhcCCCccceeEEEECcc
Confidence 222222 22 233448999999999984 48999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhh
Q 009737 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~ 478 (527)
++.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||+.||+++|+|+|+++|+|||++|++.
T Consensus 120 ~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIYe~d~~~ 198 (199)
T TIGR03283 120 QDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIYERDFDE 198 (199)
T ss_pred hhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEecccccc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999985
No 11
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=4e-43 Score=324.67 Aligned_cols=181 Identities=55% Similarity=0.936 Sum_probs=158.4
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009737 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 21 mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~ 100 (527)
|+.+.++||++.+++||++|+|||++|.||+||+++|+++++|+|.|+||||||||||+|.+++||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceee
Q 009737 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 101 ~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~ 180 (527)
+....++++++.+++.|++.|.+.+++.+.+.||||||+++|+++|++++||++++|+|...++||+|||.+|.+.++.+
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 43345679999999999999999888788899999999999999999999999999999999999999999998766654
Q ss_pred eeecCceeCCccEEEEEEEEc
Q 009737 181 YSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
.......+++..+++..+-|.
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk~ 181 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLKP 181 (190)
T ss_pred hhcCcccccccchhhhcCccc
Confidence 333333444555555554443
No 12
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=1e-40 Score=312.60 Aligned_cols=159 Identities=48% Similarity=0.804 Sum_probs=143.5
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
+|++|+|++.||+||.+|+|||++|+||+||+++|+ +++||||||||||+| .+|||+|.||||||+...
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~-- 69 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLP--FRPLPGRINIVLSRNPDY-- 69 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHST--GSSBTTSEEEEESSSTTS--
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCC--ccCCCCCeEEEEEcCccc--
Confidence 489999999999999999999999999999999998 899999999999998 369999999999999864
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|+++|++.++.. .++||||||++||+++| ++||++|+|+|+..++||+|||.++.+.|++++.
T Consensus 70 -~~~~~~~~~s~~~al~~~~~~-----~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 70 -EPEGVEVVSSLEEALELAKDK-----DEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp -CTTTSEEESSHHHHHHHHTTS-----ESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred -ccCCceeeCCHHHHHHHhhcc-----CCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 235888999999999966543 47999999999999999 6999999999999999999999999899999877
Q ss_pred ecCc--eeCCccEEEEEEEE
Q 009737 183 SFPI--VENNIRYCLSTYVR 200 (527)
Q Consensus 183 ~~~~--~e~~~~~~f~~Y~r 200 (527)
+... +++++.|+|++|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 6544 67999999999997
No 13
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=4.1e-39 Score=301.14 Aligned_cols=156 Identities=35% Similarity=0.662 Sum_probs=139.3
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
|++|+|++.||+||++|+|||++|+|++||+++|. +++|||||||||+++ +|||+|++||+||+..
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~---- 67 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPG---- 67 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCC----
Confidence 78999999999999999999999999999999998 899999999999997 6999999999999863
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (527)
..+++.++++++++++.+++ .++||||||+++|++|| ++||+++||+||..++||+|||.++.+.|++++++
T Consensus 68 ~~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~ 139 (159)
T PRK10769 68 TDDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSE 139 (159)
T ss_pred CCCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEEE
Confidence 24578888899999996653 36899999999999999 66999999999999999999999998889988654
Q ss_pred cC--ceeCCccEEEEEEEEc
Q 009737 184 FP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (527)
.. +++|++.|+|.+|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 140 FHDADEQNSHSYCFEILERR 159 (159)
T ss_pred eccccCCCCccEEEEEEEeC
Confidence 43 3577789999999983
No 14
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=5e-36 Score=282.83 Aligned_cols=164 Identities=40% Similarity=0.590 Sum_probs=144.4
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
+|++|+|+|+||+||.+|+|||++|+|++||+++|. ++.|||||||||+++...+||++|.+||+||+...
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~-------~~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~-- 71 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTL-------GKPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDL-- 71 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhC-------CCCEEEccchhhhccccCCCCCCCeEEEEecCccc--
Confidence 489999999999999999999999999999999998 67799999999999865569999999999999543
Q ss_pred CCCCC-EEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cccccCCCCCCCCceee
Q 009737 103 ATVEN-VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 103 ~~~~~-v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~GD~fFP~~~~~~f~l~ 180 (527)
..++ +.+++|+++|+..++.. .+++|||+||+++|++||+++++||++||+||..+ +||+|||..+...|+++
T Consensus 72 -~~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 72 -KTEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred -ccCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 3456 99999999999999875 26899999999999999998999999999999999 99999999777889998
Q ss_pred eeecCceeCCccEEEEEEEE
Q 009737 181 YSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (527)
.+......+.+.+.|..|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~ 166 (167)
T COG0262 147 SSEDADEKGGYFYTFESYER 166 (167)
T ss_pred eeeecccCCceeEEEEEeec
Confidence 76533345666777777765
No 15
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.97 E-value=1.1e-30 Score=244.26 Aligned_cols=158 Identities=45% Similarity=0.720 Sum_probs=135.6
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
|++++|+|+||+||..+++||++++|+++|++.+. ++++||||+|||+++. +|+|+|.++|+||++.. .
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~--~ 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDY--Q 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCc--C
Confidence 47999999999999977799999999999998886 7999999999999974 68999999999999854 2
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (527)
+++++.++.+++++++.++ . .+++|||+||+++|++|+++ +||++|+++|..++|+++||..+...|++++++
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 3567888889999999999 3 25799999999999999976 999999999999999999998765679998733
Q ss_pred cCceeCCccEEEEEEE
Q 009737 184 FPIVENNIRYCLSTYV 199 (527)
Q Consensus 184 ~~~~e~~~~~~f~~Y~ 199 (527)
.....++.+|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 3334455688998873
No 16
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=99.97 E-value=1.6e-30 Score=281.77 Aligned_cols=155 Identities=17% Similarity=0.438 Sum_probs=132.2
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
|++|||++.+|+||++|.||||+|+||+||+++|+ +++|||||||||+++ .|||+|+|||+||+......
T Consensus 2 i~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~~ 71 (505)
T PRK00478 2 IKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQRELK 71 (505)
T ss_pred EEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCccccC
Confidence 88999999999999999999999999999999998 899999999999997 58999999999998743111
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|++++++... +++||||||++||++|+ ++||+++||+||+.++||++| .++...|+++...
T Consensus 72 ~~~~v~v~~sl~~~L~~~~-------~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f-~~~~~~~~Lv~~~ 141 (505)
T PRK00478 72 NNNELFVFNDLKKLLIDFS-------NVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFV-NLNYDDFSLVQTK 141 (505)
T ss_pred CCCCeEEECCHHHHHHhCC-------CCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCC-CCChhhheeeeeE
Confidence 2357888999999976432 35899999999999999 679999999999999999998 4556689887553
Q ss_pred cCceeCCccEEEEEEEEccc
Q 009737 184 FPIVENNIRYCLSTYVRVRS 203 (527)
Q Consensus 184 ~~~~e~~~~~~f~~Y~r~~~ 203 (527)
. ...|++.+|.|+.+
T Consensus 142 ~-----~~~~v~~~Y~rk~~ 156 (505)
T PRK00478 142 E-----YDQFVVEYWEKKPN 156 (505)
T ss_pred E-----cCcEEEEEEEecCC
Confidence 2 12489999999854
No 17
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.65 E-value=1.3e-15 Score=146.97 Aligned_cols=152 Identities=20% Similarity=0.213 Sum_probs=112.7
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhccccCCCCCcEEEEccccccccCCC----CCCC---------
Q 009737 22 RSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE----HRPL--------- 86 (527)
Q Consensus 22 rki~livA~s~dG~IG~-~g~LPW~l-peD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~----~~pl--------- 86 (527)
|++++.+|+|+||+|+. +++..|.. ++|.+++.++... .+++||||+|++..... ..+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 58999999999999976 88899974 5666777777653 78999999999875320 1111
Q ss_pred CCCcEEEEcCCCCCCCC----C-CCCE-EEECC---------------HHHHHHHHhcCCCCCCCCcEEEEecHHHHHHH
Q 009737 87 PGRLNVVLTRSGSFDIA----T-VENV-VICGS---------------IGSALELLAASPYCLSIEKVFVIGGGQILSEA 145 (527)
Q Consensus 87 ~~r~~iVlSrt~~~~~~----~-~~~v-~v~~s---------------le~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~ 145 (527)
++.+.||+|++...... . ...+ ++++. ++++++.|++. +.++|+|.||+++..+|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 46689999999863110 0 1122 33333 99999999987 57999999999999999
Q ss_pred hcCCCcCEEEEEEECccc-c-ccccCCCCCCC--Cceeeeee
Q 009737 146 LNAPECDAIHITEIETRI-E-CDTFIPSIDSS--VFQPWYSS 183 (527)
Q Consensus 146 L~~~lvDel~lT~I~~~~-~-GD~fFP~~~~~--~f~l~~~~ 183 (527)
++++++||++|++.|..+ . |.++|+..... .|++++..
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~~~ 192 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVSVR 192 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEEEE
Confidence 999999999999999887 4 68999987654 47776543
No 18
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.43 E-value=7.1e-12 Score=122.96 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=109.1
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCCC--------C-------
Q 009737 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--------H------- 83 (527)
Q Consensus 21 mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~--------~------- 83 (527)
.+.+++.+|+|+||.|+. +|.- |. -+++..++.++-.. .++||||++|++.-... +
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~ 74 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIR 74 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEE
Confidence 467889999999999976 6766 97 46677777766543 78999999999863100 0
Q ss_pred -------------CCCC-CCcEEEEcCCCCCCCC----CCCCEEEE------CCHHHHHHHHhcCCCCCCCCcEEEEecH
Q 009737 84 -------------RPLP-GRLNVVLTRSGSFDIA----TVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGGG 139 (527)
Q Consensus 84 -------------~pl~-~r~~iVlSrt~~~~~~----~~~~v~v~------~sle~ai~~lk~~~~~~~~~~I~ViGGa 139 (527)
+.+. ..+.+|+|+....... ...++.+. .++.++++.|++. +.++|||.||+
T Consensus 75 vVld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 150 (217)
T PRK05625 75 VVVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGG 150 (217)
T ss_pred EEECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCH
Confidence 0011 1234444432210000 01122222 3788999999876 57899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---ccccCCCCC------CCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 140 QILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 140 ~iy~~~L~~~lvDel~lT~I~~~~~---GD~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
++..+|++++++||+++++.|..+. |.++|+... ...|++.+... .++++ +.+|.++
T Consensus 151 ~l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~~---~l~y~~~ 216 (217)
T PRK05625 151 TLIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCR--CDEGV---VLTYKVK 216 (217)
T ss_pred HHHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEE--ECCEE---EEEEEEc
Confidence 9999999999999999999998874 678887531 12566654432 34433 4777664
No 19
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.43 E-value=4.1e-12 Score=124.26 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=97.7
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccc----cCCCCCC---------
Q 009737 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP--------- 85 (527)
Q Consensus 21 mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyes----lp~~~~p--------- 85 (527)
.+.+++.+|+|+||+|+. +|...|. -+++..++.++-.. .++|||||+||+. +.. .||
T Consensus 2 rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~-r~~~~~~~~~P~ 74 (216)
T TIGR00227 2 RPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTV-RWVELDELRNPV 74 (216)
T ss_pred CCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCccee-eccCcccCCCCe
Confidence 467899999999999986 7888896 46666666666653 7899999999996 211 011
Q ss_pred ----------------CC-CCcEEEEcCCCCCCCC----CCCCEEE----EC--CHHHHHHHHhcCCCCCCCCcEEEEec
Q 009737 86 ----------------LP-GRLNVVLTRSGSFDIA----TVENVVI----CG--SIGSALELLAASPYCLSIEKVFVIGG 138 (527)
Q Consensus 86 ----------------l~-~r~~iVlSrt~~~~~~----~~~~v~v----~~--sle~ai~~lk~~~~~~~~~~I~ViGG 138 (527)
+. ..+.+|+|++...... ...++.+ .. ++.++++.|++. +.++|+|.||
T Consensus 75 ~vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG 150 (216)
T TIGR00227 75 RVVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGG 150 (216)
T ss_pred EEEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeC
Confidence 01 1234555443211000 0112322 23 799999999876 4789999999
Q ss_pred HHHHHHHhcCCCcCEEEEEEECcccc---ccccCC
Q 009737 139 GQILSEALNAPECDAIHITEIETRIE---CDTFIP 170 (527)
Q Consensus 139 a~iy~~~L~~~lvDel~lT~I~~~~~---GD~fFP 170 (527)
+++..+|++++++||+++++.|..+. |.++|.
T Consensus 151 ~~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 151 GTLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 99999999999999999999998875 555554
No 20
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.26 E-value=7e-11 Score=123.94 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=96.3
Q ss_pred CCCCCCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhccccCCCCCcEEEEccccccccCC---CCCCC--C-
Q 009737 16 TQPNPKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL---EHRPL--P- 87 (527)
Q Consensus 16 ~~~~~mrki~livA~s~dG~IG~-~g~LPW~l-peD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~---~~~pl--~- 87 (527)
....+.+-+++.+|+|+||+|+. +|...|.- +++..++.++... .+++||||+||+.... ..||- .
T Consensus 135 ~~~~~rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~r~~~~~~~ 208 (344)
T TIGR00326 135 RMRTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTARLDEATEQ 208 (344)
T ss_pred hhhcCCCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccccCCCCCCC
Confidence 33445678999999999999986 88889974 4555666655443 7899999999995210 01221 0
Q ss_pred ---------------------CCcEEEEcCCCCC-CCCCCCCEEEE----CCHHHHHHHHhcCCCCCCCCcEEEEecHHH
Q 009737 88 ---------------------GRLNVVLTRSGSF-DIATVENVVIC----GSIGSALELLAASPYCLSIEKVFVIGGGQI 141 (527)
Q Consensus 88 ---------------------~r~~iVlSrt~~~-~~~~~~~v~v~----~sle~ai~~lk~~~~~~~~~~I~ViGGa~i 141 (527)
..+.+|+|++... ......++.+. .|+.++++.|++. +.++|+|.||+.+
T Consensus 209 P~~vV~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L 284 (344)
T TIGR00326 209 PLRVVLDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNL 284 (344)
T ss_pred CeEEEEcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHH
Confidence 1234444443110 00001122222 2889999999876 5789999999999
Q ss_pred HHHHhcCCCcCEEEEEEECccccc
Q 009737 142 LSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 142 y~~~L~~~lvDel~lT~I~~~~~G 165 (527)
..+|+++++|||+++++.|..+.|
T Consensus 285 ~~~ll~~gLVDEl~l~i~P~ilG~ 308 (344)
T TIGR00326 285 LGSFLDEGLVDELIIYIAPKLLGG 308 (344)
T ss_pred HHHHHHCCCCeEEEEEEccEEecC
Confidence 999999999999999999977743
No 21
>PRK14059 hypothetical protein; Provisional
Probab=99.13 E-value=5.7e-09 Score=105.00 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=115.8
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCC---C----------C
Q 009737 20 PKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH---R----------P 85 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~---~----------p 85 (527)
+.+-+.+.+|+|+||.|+.+|.--|. -+++.+++.++-.. .++|+.|.+|-..=.... . .
T Consensus 29 ~rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g 102 (251)
T PRK14059 29 DRPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARG 102 (251)
T ss_pred CCCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcC
Confidence 56889999999999999977777786 57787777776653 789999999985421100 0 0
Q ss_pred C-CCCcEEEEcCCCCCCCC------C-----------------------CCCEE-EE-----CCHHHHHHHHhcCCCCCC
Q 009737 86 L-PGRLNVVLTRSGSFDIA------T-----------------------VENVV-IC-----GSIGSALELLAASPYCLS 129 (527)
Q Consensus 86 l-~~r~~iVlSrt~~~~~~------~-----------------------~~~v~-v~-----~sle~ai~~lk~~~~~~~ 129 (527)
. ++.+.||++++...+.. . ..++. +. -++.++++.|++. +
T Consensus 103 ~~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g 178 (251)
T PRK14059 103 QAEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----G 178 (251)
T ss_pred CCCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----C
Confidence 0 22345677665432100 0 00121 11 2788889999875 5
Q ss_pred CCcEEEEecHHHHHHHhcCCCcCEEEEEEECcccc-c-cccCCCC--CCCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRIE-C-DTFIPSI--DSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 130 ~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~-G-D~fFP~~--~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
.++|+|.||+.+..+|++++++||+++++.|..+. | -++|+.. ....|++.+... .++ +..+.+|.+.
T Consensus 179 ~~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~~--~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 179 LRRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVLT--DDD--GYLFLRYVRA 250 (251)
T ss_pred CCEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEEE--cCC--CEEEEEEEeC
Confidence 78999999999999999999999999999998883 4 4677653 224677754432 234 4588999874
No 22
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=98.92 E-value=7.9e-08 Score=94.18 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=94.8
Q ss_pred eEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEcccccccc----CCCCCC-CCCCcEEEEc
Q 009737 23 SYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI----PLEHRP-LPGRLNVVLT 95 (527)
Q Consensus 23 ki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyesl----p~~~~p-l~~r~~iVlS 95 (527)
-+++-+|+|+||.|+. +|+ -|. -+++.+++.++-.. .++|+.|.+|-..= ..+... -.+...||++
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld 74 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVD 74 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCcccccCcccCCCCEEEEEC
Confidence 3678999999999986 666 563 36777777777753 78999999998632 111000 0123457777
Q ss_pred CCCCCCCC----------------C----------CCCE--EEEC----CHHHHHHHHhcCCCCCCCCcEEEEecHHHHH
Q 009737 96 RSGSFDIA----------------T----------VENV--VICG----SIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (527)
Q Consensus 96 rt~~~~~~----------------~----------~~~v--~v~~----sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~ 143 (527)
++...+.. . ..++ ..+. ++.++++.|++. +.++|+|-||+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~ 150 (210)
T TIGR01508 75 SKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLIW 150 (210)
T ss_pred CCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHHH
Confidence 66532100 0 0012 1111 678888888875 578999999999999
Q ss_pred HHhcCCCcCEEEEEEECcccc---ccccCC
Q 009737 144 EALNAPECDAIHITEIETRIE---CDTFIP 170 (527)
Q Consensus 144 ~~L~~~lvDel~lT~I~~~~~---GD~fFP 170 (527)
+|++++++||+++++.|..+. +..+|.
T Consensus 151 ~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 151 SLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 999999999999999998874 345554
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.70 E-value=1e-06 Score=93.02 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=92.9
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhccccCCCCCcEEEEcccccccc----CCCCC---CCCCCcE
Q 009737 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI----PLEHR---PLPGRLN 91 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~-~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyesl----p~~~~---pl~~r~~ 91 (527)
.++-+++-+|+|+||.||. +|.-...-+++.++..++-.. .++|++|..|-..= ..... +-++...
T Consensus 138 ~rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~R 211 (360)
T PRK14719 138 MLPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLR 211 (360)
T ss_pred CCCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEE
Confidence 4677999999999999996 555333457777777776653 79999999998421 10000 1122344
Q ss_pred EEEcCCCCCCCC------------------C-----------CCCEEE-E-----CCHHHHHHHHhcCCCCCCCCcEEEE
Q 009737 92 VVLTRSGSFDIA------------------T-----------VENVVI-C-----GSIGSALELLAASPYCLSIEKVFVI 136 (527)
Q Consensus 92 iVlSrt~~~~~~------------------~-----------~~~v~v-~-----~sle~ai~~lk~~~~~~~~~~I~Vi 136 (527)
||++++...+.. + ..++.+ . -++.++++.|.+. +...|||-
T Consensus 212 VVlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVE 287 (360)
T PRK14719 212 IVVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLE 287 (360)
T ss_pred EEEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEE
Confidence 666554322100 0 001211 1 1677888888765 57899999
Q ss_pred ecHHHHHHHhcCCCcCEEEEEEECccccc
Q 009737 137 GGGQILSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 137 GGa~iy~~~L~~~lvDel~lT~I~~~~~G 165 (527)
||+++..+|++++++||+++++.|..+.|
T Consensus 288 GG~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 288 GGGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred eCHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 99999999999999999999999988754
No 24
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.56 E-value=4.1e-06 Score=82.70 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=98.5
Q ss_pred CceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCC----CCCC---CCCCcE
Q 009737 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL----EHRP---LPGRLN 91 (527)
Q Consensus 21 mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~----~~~p---l~~r~~ 91 (527)
.+.+++-+|+|+||.||. +|+--|. -+++.+..-++-.. .++|+.|..|-..=-. +.-. ..+...
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 458899999999999997 6666697 56776666665543 7899999999864210 0001 134456
Q ss_pred EEEcCCCCCCCC-----CC---CCE--------------------EEEC----CHHHHHHHHhcCCCCCCCCcEEEEecH
Q 009737 92 VVLTRSGSFDIA-----TV---ENV--------------------VICG----SIGSALELLAASPYCLSIEKVFVIGGG 139 (527)
Q Consensus 92 iVlSrt~~~~~~-----~~---~~v--------------------~v~~----sle~ai~~lk~~~~~~~~~~I~ViGGa 139 (527)
||++++...+.. .. +.. ++++ |+..+++.|.+. +...|+|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 777766432100 00 111 1222 578888888876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECccccc--cccCCC
Q 009737 140 QILSEALNAPECDAIHITEIETRIEC--DTFIPS 171 (527)
Q Consensus 140 ~iy~~~L~~~lvDel~lT~I~~~~~G--D~fFP~ 171 (527)
.+..+|+++++|||+.+++.|..+.| -+++..
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~ 186 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVGG 186 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCccccC
Confidence 99999999999999999999988854 566654
No 25
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.48 E-value=3.3e-06 Score=89.59 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=99.3
Q ss_pred CCCCCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCC--C-C-C----
Q 009737 17 QPNPKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH--R-P-L---- 86 (527)
Q Consensus 17 ~~~~mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~--~-p-l---- 86 (527)
.....+-+++-+|+|+||.|+. +|+--|. -++|.+++.++-.. .++|++|..|-..=.... + + +
T Consensus 142 ~~~~rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~ 215 (367)
T PRK10786 142 MRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQT 215 (367)
T ss_pred hhcccceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCcccccccccccc
Confidence 3445677999999999999986 7777785 57888888877753 799999999986321100 0 0 0
Q ss_pred ---------CCCcEEEEcCCCCCCCC------C---------------CCCE---EEE-----CCHHHHHHHHhcCCCCC
Q 009737 87 ---------PGRLNVVLTRSGSFDIA------T---------------VENV---VIC-----GSIGSALELLAASPYCL 128 (527)
Q Consensus 87 ---------~~r~~iVlSrt~~~~~~------~---------------~~~v---~v~-----~sle~ai~~lk~~~~~~ 128 (527)
+....||++++...+.. . ..++ .+. -|+.++++.|.+.
T Consensus 216 ~~~~~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~---- 291 (367)
T PRK10786 216 QALYPQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ---- 291 (367)
T ss_pred ccccccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----
Confidence 12346888887543110 0 0011 111 1677888888765
Q ss_pred CCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcccc
Q 009737 129 SIEKVFVIGGGQILSEALNAPECDAIHITEIETRIE 164 (527)
Q Consensus 129 ~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~ 164 (527)
+.++|||-||+.+..+|++++++||+++++.|..+.
T Consensus 292 Gi~~l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G 327 (367)
T PRK10786 292 QINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLG 327 (367)
T ss_pred CCCEEEEeeCHHHHHHHHHCCCccEEEEEEcceecc
Confidence 689999999999999999999999999999998774
No 26
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=97.77 E-value=0.00057 Score=72.96 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=87.0
Q ss_pred CCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCC--CC-C-CCCCcEEE
Q 009737 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--HR-P-LPGRLNVV 93 (527)
Q Consensus 19 ~~mrki~livA~s~dG~IG~-~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~--~~-p-l~~r~~iV 93 (527)
.+++-+++-+|+|+||.|+. .|.--|.-..+....+ .. .++|+.| +|--.=... -+ | .++...||
T Consensus 173 ~~rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lR---a~------~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVV 242 (380)
T PLN02807 173 TGKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLL---QE------YDAVILS-SALADADPLPLSQEAGAKQPLRII 242 (380)
T ss_pred hccccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHH---hh------CCEEEEc-CEeeccCCCCccCCCCCCCCEEEE
Confidence 35678999999999999986 4543343222322222 21 6899999 986422110 01 1 12345678
Q ss_pred EcCCCCCCC-------CCC-------------------CCEEEE--C--CHHHHHHHHhcCCCCCCCCcEEEEe------
Q 009737 94 LTRSGSFDI-------ATV-------------------ENVVIC--G--SIGSALELLAASPYCLSIEKVFVIG------ 137 (527)
Q Consensus 94 lSrt~~~~~-------~~~-------------------~~v~v~--~--sle~ai~~lk~~~~~~~~~~I~ViG------ 137 (527)
++++...+. ... .++.+. . ++.++++.|.+. +...|+|=|
T Consensus 243 ld~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~ 318 (380)
T PLN02807 243 IARSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGG 318 (380)
T ss_pred EcCCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCC
Confidence 877653210 000 011111 1 688888888776 689999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECccccc
Q 009737 138 GGQILSEALNAPECDAIHITEIETRIEC 165 (527)
Q Consensus 138 Ga~iy~~~L~~~lvDel~lT~I~~~~~G 165 (527)
|+++..+|++++++||+++++.|..+.+
T Consensus 319 G~~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 319 LESLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHHHCCCccEEEEEEcCceecC
Confidence 8999999999999999999999988854
No 27
>PHA03370 virion protein US2; Provisional
Probab=32.23 E-value=1.4e+02 Score=30.12 Aligned_cols=85 Identities=9% Similarity=0.123 Sum_probs=50.6
Q ss_pred CHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhc-CCCcCEEEEEEECccccccc------cCCCCCCCCceee----e
Q 009737 113 SIGSALELLAASPYCLSIEKVFVIGGGQILSEALN-APECDAIHITEIETRIECDT------FIPSIDSSVFQPW----Y 181 (527)
Q Consensus 113 sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~-~~lvDel~lT~I~~~~~GD~------fFP~~~~~~f~l~----~ 181 (527)
|+..-...|...-..+..-++||+|-|.|++.+++ .++=-++....|+....|-+ +-|.+. ..|+.. +
T Consensus 113 sv~sGy~~LnSg~~gn~pyhLWVlGAADLC~p~~e~ip~pkRli~~kv~~tW~G~~W~lPd~~~~~~t-s~W~P~~~~~~ 191 (269)
T PHA03370 113 DVLSGYLMLESEVSGNHSYSLWIVGAADICRPAIEQIPLPKRLLAIKVPGTWSGMPWAIPDGIQTLLT-STWEPKFDTTE 191 (269)
T ss_pred hHHHHHHHhccccccCcceeeEEechHHHHHHHHHhCCCCceEEEEEcCccccCCcccCCCCCCccee-ccCCCCCCchh
Confidence 45555566654322122356999999999999994 35567888888998876643 333322 234432 2
Q ss_pred eecCceeCCccEEEEEE
Q 009737 182 SSFPIVENNIRYCLSTY 198 (527)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y 198 (527)
...+..++|..+.|.+.
T Consensus 192 ~k~~~~~~~~~c~y~~i 208 (269)
T PHA03370 192 DKAHFEDSGMKCVYKII 208 (269)
T ss_pred hhhhhhcCCceEEeeec
Confidence 22234556776655553
No 28
>PRK00536 speE spermidine synthase; Provisional
Probab=26.43 E-value=38 Score=34.60 Aligned_cols=43 Identities=12% Similarity=0.381 Sum_probs=32.5
Q ss_pred CCCcEEEEecHH--HHHHHhcCCCcCEEEEEEECccc--cccccCCCCC
Q 009737 129 SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETRI--ECDTFIPSID 173 (527)
Q Consensus 129 ~~~~I~ViGGa~--iy~~~L~~~lvDel~lT~I~~~~--~GD~fFP~~~ 173 (527)
..++|.|+||+. +.++.|+++ +++.+-.|...+ -|-.+||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 358999999975 899999987 466666665543 4778899754
No 29
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=25.91 E-value=1.3e+02 Score=26.84 Aligned_cols=85 Identities=14% Similarity=0.319 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
..+++++. ...+.+-++.|.-.-|+..+.+..- ..+++.|.|.++.-- |.++ ...
T Consensus 22 ~~~~~~lN--d~~aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~Dmal--------RLky--------AGv 76 (113)
T PF08353_consen 22 KSVLIALN--DNYADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMAL--------RLKY--------AGV 76 (113)
T ss_pred ceEEEEec--CCCCCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHh--------Heee--------cCc
Confidence 34455553 3335555688987778776654432 568999999888653 2111 011
Q ss_pred CCCCEEEECCHHHHHHH--HhcCCCCCCCCcEEEEe
Q 009737 104 TVENVVICGSIGSALEL--LAASPYCLSIEKVFVIG 137 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~--lk~~~~~~~~~~I~ViG 137 (527)
+.+.+.+..++++|++. +... +.+.++|+.
T Consensus 77 ~~~~i~v~~d~~~a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 77 DEEKIIVEEDLEEALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred chHHeEecCCHHHHHHHHHHhcC----CCCcEEEEE
Confidence 22346678899999998 4443 357788874
Done!