Query 009737
Match_columns 527
No_of_seqs 320 out of 2498
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:53:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrr_A Dihydrofolate reductase 100.0 1E-147 5E-152 1188.2 47.3 503 15-527 6-515 (515)
2 3hj3_A Chain A, crystal struct 100.0 2E-146 7E-151 1180.5 44.3 501 20-527 3-521 (521)
3 3irm_A Bifunctional dihydrofol 100.0 3E-144 1E-148 1163.7 44.9 473 16-527 15-521 (521)
4 3qg2_A Bifunctional dihydrofol 100.0 1E-144 5E-149 1174.4 40.3 503 20-527 24-608 (608)
5 3ed7_A Tsase, TS, thymidylate 100.0 6E-108 2E-112 820.3 24.0 288 240-527 8-295 (295)
6 1j3k_C Bifunctional dihydrofol 100.0 3E-106 1E-110 818.1 28.4 307 221-527 22-328 (328)
7 3kgb_A Thymidylate synthase 1/ 100.0 9E-106 3E-110 805.4 22.4 286 241-527 6-294 (294)
8 1f28_A Thymidylate synthase; b 100.0 4E-104 2E-108 797.0 25.6 288 240-527 2-297 (297)
9 2aaz_A TS, tsase, thymidylate 100.0 3E-103 9E-108 795.7 27.1 287 241-527 17-317 (317)
10 1hw4_A TS, thymidylate synthas 100.0 2E-103 8E-108 801.2 26.1 288 240-527 68-355 (355)
11 4dq1_A TS, tsase, thymidylate 100.0 4E-103 1E-107 791.1 23.4 278 241-527 6-321 (321)
12 3v8h_A TS, tsase, thymidylate 100.0 1E-101 5E-106 783.9 19.8 284 241-527 2-327 (327)
13 3uwl_A TS, tsase, thymidylate 100.0 1E-100 5E-105 779.8 25.0 276 244-527 2-315 (315)
14 3qj7_A TS, tsase, thymidylate 100.0 5E-100 2E-104 754.6 23.3 264 243-527 1-264 (264)
15 2g8o_A TS, tsase, thymidylate 100.0 6.1E-97 2E-101 736.3 24.7 264 244-527 1-264 (264)
16 1tis_A Thymidylate synthase; t 100.0 1.7E-97 6E-102 744.8 17.2 267 244-527 1-286 (286)
17 3ix6_A TS, tsase, thymidylate 100.0 2.1E-96 7E-101 758.4 21.6 267 241-527 94-360 (360)
18 1bkp_A Thymidylate synthase A; 100.0 2.4E-95 8E-100 728.2 25.4 266 242-527 2-278 (278)
19 1b5e_A Protein (deoxycytidylat 100.0 7.6E-71 2.6E-75 545.4 17.2 220 241-491 6-237 (246)
20 3rg9_A Bifunctional dihydrofol 100.0 3.9E-43 1.3E-47 346.8 15.1 186 16-201 21-239 (240)
21 3nzb_X Dihydrofolate reductase 100.0 7.9E-43 2.7E-47 338.2 14.7 182 18-201 1-205 (206)
22 3s9u_A Dihydrofolate reductase 100.0 6.1E-41 2.1E-45 314.2 19.6 158 23-201 5-164 (165)
23 3tq8_A Dihydrofolate reductase 100.0 9.5E-41 3.2E-45 316.1 20.0 160 23-203 2-163 (178)
24 3ia4_A Dihydrofolate reductase 100.0 5.2E-41 1.8E-45 313.8 17.3 158 23-201 2-161 (162)
25 3dau_A Dihydrofolate reductase 100.0 1.3E-40 4.3E-45 310.2 15.8 156 24-201 2-159 (159)
26 1kmv_A DHFR, dihydrofolate red 100.0 5E-40 1.7E-44 313.6 19.1 178 21-201 1-185 (186)
27 3ix9_A Dihydrofolate reductase 100.0 1.3E-39 4.4E-44 311.6 20.2 162 21-201 22-186 (190)
28 3dfr_A Dihydrofolate reductase 100.0 1.3E-39 4.3E-44 304.5 17.6 159 25-201 2-161 (162)
29 2bl9_A Dihydrofolate reductase 100.0 3.3E-39 1.1E-43 318.3 14.0 174 23-201 26-238 (238)
30 2w3w_A Dihydrofolate reductase 100.0 8.8E-38 3E-42 293.4 17.3 160 23-201 5-167 (167)
31 1zdr_A Dihydrofolate reductase 100.0 4E-37 1.4E-41 287.9 20.7 158 24-201 2-161 (164)
32 1j3k_A Bifunctional dihydrofol 100.0 2.9E-38 9.8E-43 317.7 12.5 180 21-205 25-233 (280)
33 2w9h_A DHFR, dihydrofolate red 100.0 5.2E-37 1.8E-41 285.8 17.0 155 23-201 2-158 (159)
34 1vdr_A DHFR, dihydrofolate red 100.0 9.7E-37 3.3E-41 284.5 18.0 157 23-202 2-159 (162)
35 1df7_A DHFR, dihydrofolate red 100.0 9.7E-37 3.3E-41 284.2 16.5 154 24-201 2-159 (159)
36 1aoe_A DHFR, dihydrofolate red 100.0 2.4E-36 8.1E-41 289.7 14.4 172 22-201 4-192 (192)
37 3cse_A Dihydrofolate reductase 100.0 1.3E-36 4.4E-41 298.6 12.6 178 22-202 4-218 (227)
38 1juv_A DHFR, dihydrofolate red 100.0 3.3E-31 1.1E-35 254.3 8.6 130 24-170 2-161 (193)
39 1cz3_A Dihydrofolate reductase 100.0 9.6E-29 3.3E-33 231.4 18.4 162 22-202 1-165 (168)
40 3jtw_A Dihydrofolate reductase 100.0 8.2E-29 2.8E-33 234.3 15.7 162 21-200 3-177 (178)
41 3ky8_A Putative riboflavin bio 99.9 1.2E-26 4.2E-31 223.1 15.5 165 21-202 19-196 (197)
42 2xw7_A Dihydrofolate reductase 99.9 3.2E-26 1.1E-30 215.8 10.6 163 20-201 2-174 (178)
43 2gd9_A Hypothetical protein YY 99.9 3.8E-25 1.3E-29 210.3 11.5 168 16-201 3-188 (189)
44 3kgy_A Bifunctional deaminase- 99.9 1.8E-22 6.2E-27 198.2 16.0 165 21-200 20-230 (231)
45 2b3z_A Riboflavin biosynthesis 99.7 1.4E-16 4.9E-21 166.9 14.5 168 19-201 155-371 (373)
46 2azn_A HTP reductase, putative 99.7 3.4E-15 1.2E-19 144.9 18.9 166 20-201 2-218 (219)
47 2g6v_A Riboflavin biosynthesis 99.5 8.4E-13 2.9E-17 139.6 17.7 154 19-183 171-381 (402)
48 2hxv_A Diaminohydroxyphosphori 99.5 1.8E-12 6.1E-17 135.2 19.8 166 19-201 157-357 (360)
49 2p4g_A Hypothetical protein; p 99.4 1.2E-11 4.2E-16 123.9 20.0 169 20-203 32-263 (270)
50 1g9o_A NHE-RF; PDZ domain, com 20.7 1.2E+02 0.0042 23.4 4.7 46 452-497 40-85 (91)
51 3r68_A Na(+)/H(+) exchange reg 20.3 88 0.003 24.4 3.8 45 451-495 41-85 (95)
No 1
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=1.5e-147 Score=1188.16 Aligned_cols=503 Identities=42% Similarity=0.774 Sum_probs=469.0
Q ss_pred cCCCCCCceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhcc------ccCCCCCcEEEEccccccccCCCCCCCC
Q 009737 15 STQPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLP 87 (527)
Q Consensus 15 ~~~~~~mrki~livA~s~dG~IG~~g~LPW~-lpeD~~~F~~~t~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~ 87 (527)
+..+++||+|++|+|+|+||+||.+|+|||+ +|+|++||+++|++ ++.|++.++||||||||||+|.+++|||
T Consensus 6 ~~~~~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp 85 (515)
T 3nrr_A 6 SNSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLK 85 (515)
T ss_dssp -CTTTTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCT
T ss_pred CCCCCCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCC
Confidence 3456779999999999999999999999999 99999999999986 3467788999999999999986568999
Q ss_pred CCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccc
Q 009737 88 GRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDT 167 (527)
Q Consensus 88 ~r~~iVlSrt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~ 167 (527)
+|+||||||+... .+++.+++|+++|++.|++.+ ++++||||||++||++||++++||+++||+||..++||+
T Consensus 86 ~R~nIVlSrt~~~----~~~v~V~~sl~eal~~Lk~~~---~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~GDt 158 (515)
T 3nrr_A 86 NRINVILSRTVKE----VPGCLVYEDLSTAIRDLRANV---PHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDT 158 (515)
T ss_dssp TEEEEEECSSCCC----CTTEEEESSHHHHHHHHHHHS---CCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSE
T ss_pred CCeEEEECCCCCC----CCCEEEECCHHHHHHHHhhcc---CCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCCCc
Confidence 9999999999742 357899999999999998641 368999999999999999999999999999999999999
Q ss_pred cCCCCCCCCceeeeeecCceeCCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChhHHHH
Q 009737 168 FIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLY 247 (527)
Q Consensus 168 fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 247 (527)
|||++ ...|++++.+...+++++.|+|++|+|+++.+.+..+..+. ...++++++|+...++++|++.+++|+|+||
T Consensus 159 fFP~~-~~~w~~v~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y 235 (515)
T 3nrr_A 159 YFPDI-PDTFEITAISPTFSTDFVSYDFVIYERKDCKTVFPDPPFDQ--LLMTGTDISVPKPKYVACPGVRIRNHEEFQY 235 (515)
T ss_dssp ECCCC-CTTEEEEEECCCEECSSCEEEEEEEEECC------CCCHHH--HHTTCSCSSCCCCSCCSSTTCCEECSTHHHH
T ss_pred cCCCc-hhhCEEEEEecccccCCCceEEEEEEEcccccccccccccc--cccccccccccccccccccccccCCchHHHH
Confidence 99999 78899998766667899999999999998776553321111 2456888888888999999999999999999
Q ss_pred HHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccccccc
Q 009737 248 LRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNA 327 (527)
Q Consensus 248 l~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd~~~ 327 (527)
++||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++|||||++|+||+++|+++|++|||+|+
T Consensus 236 l~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~iWd~n~ 315 (515)
T 3nrr_A 236 LDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWELNG 315 (515)
T ss_dssp HHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTHHHH
T ss_pred HHHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccCCcceeecccchhhhHHHHHHHHhCCccHHHHHHcCCeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccccCCC
Q 009737 328 SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALP 407 (527)
Q Consensus 328 ~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~ 407 (527)
+++||++.|++++++||||++||+|||+|+++|.+|+++|+|+++|||++||++||+||+|||+|+++|||.++++|+||
T Consensus 316 ~~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~~~~~malp 395 (515)
T 3nrr_A 316 RRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALP 395 (515)
T ss_dssp SHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSC
T ss_pred hhhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecChhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCC
Q 009737 408 PCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487 (527)
Q Consensus 408 PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p 487 (527)
|||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|||||+||+|++++||+|+|
T Consensus 396 PCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p 475 (515)
T 3nrr_A 396 PCHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIP 475 (515)
T ss_dssp CSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCC
T ss_pred CCceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 488 KPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 488 ~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+++|+|+||+++++|+||+.|||+|+||+|||+|||||||
T Consensus 476 ~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~~p~ik~~~av 515 (515)
T 3nrr_A 476 HPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMSA 515 (515)
T ss_dssp CCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 9999999999999999999999999999999999999998
No 2
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=2.2e-146 Score=1180.48 Aligned_cols=501 Identities=46% Similarity=0.827 Sum_probs=464.6
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 009737 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~ 99 (527)
.||++++|+|+|+||+||.+|+|||++|+|++||+++|++.++|++.++|||||||||+++ .||||+|+||||||+..
T Consensus 3 ~MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~ 80 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLP 80 (521)
T ss_dssp CCCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSC
T ss_pred CCceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCc
Confidence 4899999999999999999999999999999999999987778888999999999999994 58999999999999975
Q ss_pred CCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECc-cccccccCCCCCCCCce
Q 009737 100 FDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIET-RIECDTFIPSIDSSVFQ 178 (527)
Q Consensus 100 ~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~-~~~GD~fFP~~~~~~f~ 178 (527)
.. ...+++++++|+++|++.+++.+ +.++|||+||++||+++|++++|||++||+||. .++||+|||+++.+ |+
T Consensus 81 ~~-~~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~GDtfFP~~d~~-w~ 155 (521)
T 3hj3_A 81 QD-EADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FL 155 (521)
T ss_dssp CC-CSCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTT-EE
T ss_pred cc-CCCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHHHHhcCCCCCEEEEEEEeccCcCcCccCCCCCCC-cE
Confidence 41 12357899999999999998752 247899999999999999999999999999999 78999999999988 99
Q ss_pred eeeeecCceeCCccEEEEEEEE-cccchhhccccCCcc--------------ccccCCCCCcccccccccCCcccc-cCh
Q 009737 179 PWYSSFPIVENNIRYCLSTYVR-VRSAAVESLSQNNDI--------------VLDSKTNSDKFEVKQFSFLPKMVF-EKH 242 (527)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (527)
+++.+....++++.|+|++|+| .++.+.+..+..+.. ...+++++++|+.+.++++|++.+ ++|
T Consensus 156 lv~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (521)
T 3hj3_A 156 PVYMSQTFCTKNISYDFMIFEKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREH 235 (521)
T ss_dssp EEEECCCEEETTEEECCEEEEECCC-----------CCHHHHHHHHHHHHHHGGGSHHHHTCCCCGGGSSSTTCSSCBCS
T ss_pred EEEeecccccCCCceEEEEEEecCcccccccccccccccccccccccccccccccccccccccccccccccccccccCCc
Confidence 9987766778999999999999 555665555444332 223346678899899999999999 899
Q ss_pred hHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009737 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
+|+||++||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++||||||+|+||+++|+++|++|
T Consensus 236 ~~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~gv~i 315 (521)
T 3hj3_A 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYI 315 (521)
T ss_dssp THHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccCcceeeeccccHHHHHHHHHHHHhCCccHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccccc
Q 009737 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~ 402 (527)
||+|++++||++.|++++++||||++||+|||+||++|.+|+++|+|+++|||++||++||+||+|||+|+++|||.+++
T Consensus 316 Wd~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp~d~~ 395 (521)
T 3hj3_A 316 WSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALS 395 (521)
T ss_dssp TSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGG
T ss_pred cCccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecChhHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEEeC-CeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHH
Q 009737 403 LMALPPCHMFAQFYMAN-GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (527)
Q Consensus 403 ~~~l~PC~~~~qf~v~~-g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~ 481 (527)
+|+|||||.++||+|++ |+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++
T Consensus 396 ~malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ 475 (521)
T 3hj3_A 396 QMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKE 475 (521)
T ss_dssp GSSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred cCCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 482 QLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 482 ~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 476 ql~R~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3hj3_A 476 QLSRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521 (521)
T ss_dssp HTTSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred HhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 9999999999999999999999999999999999999999999998
No 3
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=3.1e-144 Score=1163.73 Aligned_cols=473 Identities=51% Similarity=0.919 Sum_probs=445.8
Q ss_pred CCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcc------ccCCCCCcEEEEccccccccCCCCCCCCCC
Q 009737 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (527)
Q Consensus 16 ~~~~~mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~~r 89 (527)
+.+++||+|++|||++.||+||.+|+|||++|+||+||+++|++ .++|++.++||||||||||+|.+++|||+|
T Consensus 15 ~~~~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R 94 (521)
T 3irm_A 15 GTRLALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGR 94 (521)
T ss_dssp GGSCSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTE
T ss_pred ccccCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCC
Confidence 56788999999999999999999999999999999999999997 567888999999999999999767899999
Q ss_pred cEEEEcCCCCCC-----C--------CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 009737 90 LNVVLTRSGSFD-----I--------ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (527)
Q Consensus 90 ~~iVlSrt~~~~-----~--------~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~---lvDe 153 (527)
.||||||+.... . ...+++.+++|+++|++.+++.+++.+.++||||||++||+++|+++ +||+
T Consensus 95 ~NIVLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~ 174 (521)
T 3irm_A 95 LNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQA 174 (521)
T ss_dssp EEEEECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHHHHHhCCccccCCE
Confidence 999999997431 0 01356889999999999998753333457899999999999999999 9999
Q ss_pred EEEEEEC-ccccccccC--CCCCCCC-----ceeeeeecCcee-CC--ccEEEEEEEEcccchhhccccCCccccccCCC
Q 009737 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFPIVE-NN--IRYCLSTYVRVRSAAVESLSQNNDIVLDSKTN 222 (527)
Q Consensus 154 l~lT~I~-~~~~GD~fF--P~~~~~~-----f~l~~~~~~~~e-~~--~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~ 222 (527)
++||+|+ ..++||+|| |.++.+. |++++.+....+ ++ +.|+|++|+|+
T Consensus 175 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~F~~y~r~--------------------- 233 (521)
T 3irm_A 175 IYRTTIRASESSCSVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPR--------------------- 233 (521)
T ss_dssp EEEEEECCSSCCCSEECCCCCTTSGGGTTCCEEEEEECCCEECSSSSCCEEEEEEEEEC---------------------
T ss_pred EEEEEecCCCcccceecCCCCCChhhccccceEEEEeecccccCCCCeeeEEEEEEEEC---------------------
Confidence 9999999 889999999 9998876 999876554433 77 89999999984
Q ss_pred CCcccccccccCCcccccChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhH
Q 009737 223 SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKALFWRGVVEE 301 (527)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~E 301 (527)
+|.|+||++||++||++|+.+.||||+||+|+||+||||||++ +||+|||||++||++++|
T Consensus 234 ------------------n~~~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~E 295 (521)
T 3irm_A 234 ------------------NREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295 (521)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHH
T ss_pred ------------------ChhHHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHH
Confidence 5999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhCCCChhHhhhcCccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHH
Q 009737 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINK 381 (527)
Q Consensus 302 llW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~ 381 (527)
||||++|+||+++|+++|++|||+|++++||++.|++.+++||||++||+|||+||++|.+|+++|+|+++|||++||++
T Consensus 296 llWfl~g~tn~~~l~~~g~~iWd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~ 375 (521)
T 3irm_A 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVET 375 (521)
T ss_dssp HHHHHTTCCBTHHHHTTTCCTTSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHhcCCeecCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcceEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCccee
Q 009737 382 IKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGD 461 (527)
Q Consensus 382 Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~ 461 (527)
||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+
T Consensus 376 lk~nP~sRR~i~s~wnp~d~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~ 455 (521)
T 3irm_A 376 LKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGE 455 (521)
T ss_dssp HHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCceEEEEecChhHhhcCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 462 FIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 462 ~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|+|+++|+|||+||+|++++||+|+|+++|+|+||+++++|+||+.|||+|+||+|||+|||||||
T Consensus 456 ~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~~~~~~~~~~~df~l~~Y~~hp~ik~~~av 521 (521)
T 3irm_A 456 LVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521 (521)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESCCCSBGGGCCGGGEEEESCCCCCCCSCCCC-
T ss_pred EEEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 4
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=1.3e-144 Score=1174.40 Aligned_cols=503 Identities=44% Similarity=0.801 Sum_probs=460.9
Q ss_pred CCceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhccc----------------------------cCCCCCcEEE
Q 009737 20 PKRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQIT----------------------------SDAGKRNAVI 70 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~~g~LPW-~lpeD~~~F~~~t~~~----------------------------~~p~~~~~vI 70 (527)
...++++|||++.+|+||.+|+||| ++|+||+||+++|+++ .+|+++++||
T Consensus 24 ~~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VI 103 (608)
T 3qg2_A 24 NEGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVV 103 (608)
T ss_dssp CCSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEE
T ss_pred CCceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEE
Confidence 3678999999999999999999999 8999999999999832 1467889999
Q ss_pred EccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCC
Q 009737 71 MGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPE 150 (527)
Q Consensus 71 MGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~l 150 (527)
||||||||+|.+++|||+|+||||||+.... ...+++.+++|+++|++.+++. +.++||||||++||+++|++++
T Consensus 104 MGRKTfESIp~~frPLPgR~NIVLSR~~~~~-~~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~~~L~~~l 178 (608)
T 3qg2_A 104 MGRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKL 178 (608)
T ss_dssp EEHHHHHHSCGGGCSCTTEEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTC
T ss_pred EchHHHHhhccccCCCCCCeEEEECCCCccc-cCCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHHHHcccCC
Confidence 9999999998656899999999999996421 1235788999999999999875 3579999999999999999999
Q ss_pred cCEEEEEEECccccccccCCCCCCCCceeeeeecCceeCCccEEEEEEEEcccchhhccccCCcccc-------------
Q 009737 151 CDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVL------------- 217 (527)
Q Consensus 151 vDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~------------- 217 (527)
||+++||+|+..++||+|||+++.+.|++++.+....++++.|+|++|+|+++.+.+..+..++...
T Consensus 179 aDeL~LT~I~~~~eGDtfFP~id~~~w~~~~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (608)
T 3qg2_A 179 IKKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDT 258 (608)
T ss_dssp CSEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC---------------------------
T ss_pred CCEEEEEEeCCccCCCccCCCCChHHcEEEEEeeeeccCCCceEEEEEEECCCccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999998887778899999999999998777655433221100
Q ss_pred ---------------------------------------ccCCC-CCcccccccccCCcccccChhHHHHHHHHHHHHHC
Q 009737 218 ---------------------------------------DSKTN-SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISD 257 (527)
Q Consensus 218 ---------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~ 257 (527)
+..++ +.+++...|+++|++++++|+|+|||+||++||++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qYldl~~~Il~~ 338 (608)
T 3qg2_A 259 CHMKKLTEFYKNVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMN 338 (608)
T ss_dssp ------------------------CCHHHHHHHHHTTTCCSSCTTHHHHCGGGGHHHHHCSEECSTHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccCHHHHHHHHHHHHHHc
Confidence 00112 44677788999999999999999999999999999
Q ss_pred CccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccccccccchhhHhhcCC
Q 009737 258 GNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGL 337 (527)
Q Consensus 258 G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~ 337 (527)
|+.+.||||+||+|+||+||||||+++||+|||||++||++++||||||+|+||+++|+++|++|||+|++++|+++.|+
T Consensus 339 G~~~~dRTGtgT~s~fg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IWd~n~~~~~~~~~~~ 418 (608)
T 3qg2_A 339 GNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKL 418 (608)
T ss_dssp CEEECCSSSCCEEEEEEEEEEEETTTCCCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTGGGGSHHHHHHTTC
T ss_pred CCccCCCCCCceEEecceeEEEccccCCceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCCccCccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccccCCCCceeEEEEEE
Q 009737 338 TDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM 417 (527)
Q Consensus 338 ~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v 417 (527)
.++++||||++||+|||+|+++|.+|+++|+|+++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|
T Consensus 419 ~~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V 498 (608)
T 3qg2_A 419 FHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYV 498 (608)
T ss_dssp TTSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEE
T ss_pred ccccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecChhHhccCCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCC
Q 009737 418 ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINP 497 (527)
Q Consensus 418 ~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~ 497 (527)
++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||+
T Consensus 499 ~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~ 578 (608)
T 3qg2_A 499 FDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNP 578 (608)
T ss_dssp ETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECT
T ss_pred eCCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHhcCCCCCCCEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 498 EKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 498 ~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
++++|+||++|||+|+||+|||+|||||||
T Consensus 579 ~~~~i~df~~~Df~l~~Y~~hp~Ik~~~av 608 (608)
T 3qg2_A 579 DIKNIEDFTISDFTIQNYVHHEKISMDMAA 608 (608)
T ss_dssp TCCSGGGCCGGGEEEESCCCCCCCCSSCCC
T ss_pred CCCChhcCCHhHEEEeCCcCCCccCcCccC
Confidence 999999999999999999999999999998
No 5
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=6.2e-108 Score=820.26 Aligned_cols=288 Identities=66% Similarity=1.164 Sum_probs=276.4
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009737 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
.+|+|+||+++|++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++|||||++|+||+++|+++|
T Consensus 8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 87 (295)
T 3ed7_A 8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 87 (295)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC--
T ss_pred CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccCcceeecccccHHHHHHHHHHHHhCCccHHHHHHcC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcc
Q 009737 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~ 399 (527)
++|||+|++++|+++.|++.+++||||++||+|||+||++|.+|+++|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 88 v~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 167 (295)
T 3ed7_A 88 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 167 (295)
T ss_dssp ---CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCHh
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009737 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 168 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~ 247 (295)
T 3ed7_A 168 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 247 (295)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 480 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
++||+|+|+++|+|+||+++++|+||+.|||+|+||+|||+|||||||
T Consensus 248 ~~qL~R~p~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~aV 295 (295)
T 3ed7_A 248 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295 (295)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCC----
T ss_pred HHHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 999999999999999999999999999999999999999999999998
No 6
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=3.4e-106 Score=818.07 Aligned_cols=307 Identities=54% Similarity=1.029 Sum_probs=301.2
Q ss_pred CCCCcccccccccCCcccccChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHh
Q 009737 221 TNSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVE 300 (527)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~ 300 (527)
++++.++...++++|++++.+++|+||+++|++||++|+.+.||||+||+|+||+||||||++|||++||||++||++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~gFPllTtKkv~~ks~i~ 101 (328)
T 1j3k_C 22 KNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIE 101 (328)
T ss_dssp TSCSCCCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHH
T ss_pred hccCcccccceeechhhcccCcHHHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccCCcccccccccchhcHH
Confidence 55556777889999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCChhHhhhcCccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHH
Q 009737 301 ELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVIN 380 (527)
Q Consensus 301 EllW~l~G~~~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~ 380 (527)
||||||+|+||+++|+++|++|||+||+++|++++|++++++||||++||+|||+||+.|.+++.+|+|+++|||++||+
T Consensus 102 ELLWfl~G~tni~~L~e~gv~IWd~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~ 181 (328)
T 1j3k_C 102 ELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIIN 181 (328)
T ss_dssp HHHHHHTTCCBHHHHHTTTCCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHcCCcccCccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcceEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcce
Q 009737 381 KIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPG 460 (527)
Q Consensus 381 ~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G 460 (527)
+||+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|
T Consensus 182 ~Lk~nP~SRR~IvsaWnp~dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~G 261 (328)
T 1j3k_C 182 LIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPA 261 (328)
T ss_dssp HHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHhcCCCCceEEEEccCHHHhcCCCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 461 DFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 461 ~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+|+|+++|+|||+||+|+|++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 262 efih~igdaHIY~nhie~v~~qL~R~P~~~P~l~i~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~vAV 328 (328)
T 1j3k_C 262 QFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 328 (328)
T ss_dssp EEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred EEEEEEeeeEeeHHHHHHHHHHhcCCCCCCCeeEeCCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=8.8e-106 Score=805.42 Aligned_cols=286 Identities=57% Similarity=1.085 Sum_probs=249.5
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~-~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
+|+|+||+++|++||++|+.+.||||+||+|+||+||||||++ +||+|||||++||++++|||||++|+||+++|+++|
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 85 (294)
T 3kgb_A 6 RHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKG 85 (294)
T ss_dssp -CTHHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTTT
T ss_pred CchHHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHhcC
Confidence 6999999999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred ccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcc
Q 009737 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~ 399 (527)
++|||+|++++|+++.|+ ++++|||||+||+|||+||++|.+|+++|+|+++|||++||++||+||+|||+|+++|||.
T Consensus 86 v~IWd~~~~~~~~~~~~~-~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 164 (294)
T 3kgb_A 86 VRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPT 164 (294)
T ss_dssp CC----------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCTT
T ss_pred CCccccchhhhhhhcccc-cccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecChh
Confidence 999999999999999998 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009737 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 165 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~~ 244 (294)
T 3kgb_A 165 DLGSMALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSL 244 (294)
T ss_dssp CHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhcCCCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCC--CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 480 EEQLQKLPKPFPILKINPE--KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~--~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
++||+|+|+++|+|+||++ +++|+||+.|||+|+||+|||+||||||.
T Consensus 245 ~~qL~R~p~~~P~l~i~~~~~~~~i~df~~~Df~l~~Y~~hp~Ik~~~a~ 294 (294)
T 3kgb_A 245 RQQIQRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMSA 294 (294)
T ss_dssp HHHTTSCCCCCCEEEECCSSCCCSGGGCCGGGEEEESCCCC---------
T ss_pred HHHhcCCCCCCCEEEECCcCCCCchhcCCHhHEEEeCCcCCCcCCCCCCC
Confidence 9999999999999999999 99999999999999999999999999983
No 8
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=4.4e-104 Score=796.96 Aligned_cols=288 Identities=63% Similarity=1.152 Sum_probs=284.3
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccccchHhHHHHHHhCCCChhHhhh
Q 009737 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKALFWRGVVEELLWFISGSTNAKVLQE 317 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~-~~~~dl~~~-fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~ 317 (527)
++|.|+||+++|++||++|+.+.||||+||+|+||+ |+||||++| ||++||||++||++++||||||+|+||+++|++
T Consensus 2 ~~~~e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~ 81 (297)
T 1f28_A 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLRE 81 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHH
Confidence 468999999999999999999999999999999999 999999999 999999999999999999999999999999999
Q ss_pred cCccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecC
Q 009737 318 KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397 (527)
Q Consensus 318 ~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~ 397 (527)
+|++|||+|++++|++++|++++++||||++||+|||+|++.|.+++.+|.|+++|||++||++||+||+|||+|+++||
T Consensus 82 ~gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wn 161 (297)
T 1f28_A 82 KNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWN 161 (297)
T ss_dssp TTCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCCcCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceeEEEEEEe------CCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccc
Q 009737 398 PSDLKLMALPPCHMFAQFYMA------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV 471 (527)
Q Consensus 398 p~~~~~~~l~PC~~~~qf~v~------~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HI 471 (527)
|+++++|+|||||.++||+|+ +|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+||
T Consensus 162 p~dl~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHI 241 (297)
T 1f28_A 162 PADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHI 241 (297)
T ss_dssp TTTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEe
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 472 YRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 472 Y~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 242 Y~nh~e~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~av 297 (297)
T 1f28_A 242 YKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297 (297)
T ss_dssp EHHHHHHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred eHhHHHHHHHHHhcCCCCCCEeeeCCCCCchhhCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 9
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=2.7e-103 Score=795.70 Aligned_cols=287 Identities=61% Similarity=1.085 Sum_probs=283.8
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccccchHhHHHHHHhCCCChhHhhhc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKALFWRGVVEELLWFISGSTNAKVLQEK 318 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~-~~~~dl~~~-fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~ 318 (527)
+|+|+||++||++||++|+.+.||||+||+|+||+ |+||||+++ ||+|||||++||++++||||||+|+||+++|+++
T Consensus 17 ~~~e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~~ 96 (317)
T 2aaz_A 17 DHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSSQ 96 (317)
T ss_dssp TCTHHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHTT
T ss_pred CcHHHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHhc
Confidence 57899999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred CccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCc
Q 009737 319 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNP 398 (527)
Q Consensus 319 ~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p 398 (527)
|++|||+|++++||+++|++++++||||++||+|||+|++.|.+++.+|.|+++|||++||++||+||+|||+|+++|||
T Consensus 97 gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWnp 176 (317)
T 2aaz_A 97 GVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNP 176 (317)
T ss_dssp TCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCcccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCceeEEEEEEe---------CCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcc
Q 009737 399 SDLKLMALPPCHMFAQFYMA---------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDA 469 (527)
Q Consensus 399 ~~~~~~~l~PC~~~~qf~v~---------~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~ 469 (527)
+++++|+|||||.++||+|+ +|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+
T Consensus 177 ~dl~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gda 256 (317)
T 2aaz_A 177 KDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDA 256 (317)
T ss_dssp TTGGGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hHhhcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeeee
Confidence 99999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHhhcCCCCCCeEEeCCC---CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 470 HVYRNHVRPLEEQLQKLPKPFPILKINPE---KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 470 HIY~~h~~~~~~~l~r~p~~~P~l~~~~~---~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|||+||+|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+|||||||
T Consensus 257 HIY~nH~e~v~~qL~R~p~~~P~l~i~~~~~~~~~i~d~~~eDf~l~~Y~~hp~Ik~~vaV 317 (317)
T 2aaz_A 257 HVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMSA 317 (317)
T ss_dssp EEEGGGHHHHHHHHTSCCCCCCEEEESSCHHHHCSTTCCCGGGEEEECCCCCCCCCCCCCC
T ss_pred EeeHhHHHHHHHHHhcCCCCCCeEEECCccCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 99999999999999999999999999999 89999999999999999999999999998
No 10
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=2.3e-103 Score=801.20 Aligned_cols=288 Identities=66% Similarity=1.164 Sum_probs=260.3
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcC
Q 009737 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKD 319 (527)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~ 319 (527)
++|+|+||+++|++||++|+.+.||||+||+|+||+|+||||+++||++||||++||++++||||||+|+||+++|+++|
T Consensus 68 ~~~~e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~g 147 (355)
T 1hw4_A 68 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 147 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcCCcccccccccccccHHHHHHHHhCCCcHHHHHHcC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcc
Q 009737 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (527)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~ 399 (527)
++|||+|++++|++++|++++++||+|++||+|||+|+++|.+++.+|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 148 v~IWd~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp~ 227 (355)
T 1hw4_A 148 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 227 (355)
T ss_dssp C----------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccCCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhH
Q 009737 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (527)
Q Consensus 400 ~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~ 479 (527)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 228 dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~v 307 (355)
T 1hw4_A 228 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 307 (355)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred hhhcCCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 480 EEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 308 keqL~ReP~~~P~L~in~~~~~i~df~~eDf~l~~Y~~hp~Ik~~vAV 355 (355)
T 1hw4_A 308 KIQLQREPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355 (355)
T ss_dssp HHHTTSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred HHHHhcCCCCCCeeEeCCCCCchhhCChhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999998
No 11
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=4.4e-103 Score=791.09 Aligned_cols=278 Identities=48% Similarity=0.847 Sum_probs=268.1
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
++.|+||++||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++||||||+|+||+++|+++|+
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~gfPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~gv 85 (321)
T 4dq1_A 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNN 85 (321)
T ss_dssp CHHHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCCCceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHhhcCCCC--------------------------------------CCCCCCCCccccccccccccccc
Q 009737 321 HIWDGNASREYLDSVGLTD--------------------------------------REEGDLGPVYGFQWRHFGARYTN 362 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~--------------------------------------~~~g~lG~~YG~~wR~~~~~~~~ 362 (527)
+|||+||+++||++.|+.. +++||||++||+|||+|++
T Consensus 86 ~IWd~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~---- 161 (321)
T 4dq1_A 86 NIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVD---- 161 (321)
T ss_dssp CTTHHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEEC----
T ss_pred cccCccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcC----
Confidence 9999999999999988753 5689999999999999985
Q ss_pred cccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHH
Q 009737 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA 442 (527)
Q Consensus 363 ~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~ 442 (527)
|+|+++|||++||++||+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||+|+++|+||||+
T Consensus 162 ----~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNia 237 (321)
T 4dq1_A 162 ----KDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIA 237 (321)
T ss_dssp ----TTCCEECHHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHH
T ss_pred ----CCCCchhHHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCC
Q 009737 443 SYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIE 522 (527)
Q Consensus 443 ~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik 522 (527)
+|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||++ ++|+||++|||+|+||+|||+||
T Consensus 238 syalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~-~~i~df~~eDf~l~~Y~~hp~Ik 316 (321)
T 4dq1_A 238 SYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIK 316 (321)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC-SCGGGCCGGGEEEESCCCCCCCC
T ss_pred HHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC-CCcccCCHhHEEEeCCcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccC
Q 009737 523 MKMAV 527 (527)
Q Consensus 523 ~~~av 527 (527)
+||||
T Consensus 317 ~~vAV 321 (321)
T 4dq1_A 317 APIAV 321 (321)
T ss_dssp C----
T ss_pred ccccC
Confidence 99998
No 12
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=1.5e-101 Score=783.87 Aligned_cols=284 Identities=36% Similarity=0.653 Sum_probs=260.1
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
.+.|+||++||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++||||||+|+||+++|+++|+
T Consensus 2 ~~~m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv 81 (327)
T 3v8h_A 2 PGSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGC 81 (327)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccCCcccccccccHHHHHHHHHHHHhCCccHHHHHHcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc--chhhHhhcCCCCCCCCCCCCccccccccccccccccccC-------------------CCCC--------c
Q 009737 321 HIWDGNA--SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD-------------------YSGQ--------G 371 (527)
Q Consensus 321 ~iWd~~~--~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~-------------------~~~~--------~ 371 (527)
+|||+|| +++||++. . .+++|||||+||+|||+|++ |.+|+++ ++|+ +
T Consensus 82 ~IWd~wa~~~~~~ld~~-~-~~e~GdLGpvYG~QWR~~~a-y~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~ 158 (327)
T 3v8h_A 82 KVWDANANENAQWLANP-Y-RRGADDLGDVYGVQWRRWPG-YKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKA 158 (327)
T ss_dssp CTTHHHHHTCHHHHTCT-T-CCSTTBCCSCTHHHHHHEEE-EEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred cccccchhhhhhhhccc-c-cccCCCCCcchhhHhhhccc-cccccccchhhhhhhhcccceeccccCCCcccccccccc
Confidence 9999999 88999872 2 25689999999999999998 6666653 4577 8
Q ss_pred chHHHHHHHHHhcCCCCcceEEEecCcccccccCCCCceeEEEE--EEeCCeEEEEEEeecccccccccchHHHHHHHHH
Q 009737 372 FDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQF--YMANGELSCQMYQRSADMGLGVPFNIASYALLTC 449 (527)
Q Consensus 372 ~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf--~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~ 449 (527)
+|||++||++||+||+|||+|+++|||.++++|+|||||.++|| +|++|+|+|++||||+|+++|+||||++|++|++
T Consensus 159 iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~ 238 (327)
T 3v8h_A 159 IDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLT 238 (327)
T ss_dssp ECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCc-----------ccCCeEEeCCCCC
Q 009737 450 MIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSF-----------VAEDFKLIGYDPH 518 (527)
Q Consensus 450 ~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~-----------~~~df~l~~Y~~~ 518 (527)
|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||+++++|+|| ++|||+|+||+||
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~~~~i~d~~~y~~~w~~~~~~~Df~l~~Y~~h 318 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHH 318 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTTSCCHHHHCCCCTTHHHHCCGGGEEEESCCCC
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCCCCCHHHhhcccccccccCCccceEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred CCCCccccC
Q 009737 519 QKIEMKMAV 527 (527)
Q Consensus 519 ~~ik~~~av 527 (527)
|+|||||||
T Consensus 319 p~Ik~~~AV 327 (327)
T 3v8h_A 319 EPLSAPMAV 327 (327)
T ss_dssp ---------
T ss_pred CcCCCCccC
Confidence 999999998
No 13
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=1.3e-100 Score=779.78 Aligned_cols=276 Identities=52% Similarity=0.913 Sum_probs=265.1
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+|||+||++||++|+.+.||||+||+|+||+||||||++|||+|||||++||++++||||||+|+||++.|++.||+||
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~gFPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~IW 81 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHIW 81 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCCCceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhcCCCCC--------------------------------------CCCCCCCcccccccccccccccccc
Q 009737 324 DGNASREYLDSVGLTDR--------------------------------------EEGDLGPVYGFQWRHFGARYTNMHA 365 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~--------------------------------------~~g~lG~~YG~~wR~~~~~~~~~~~ 365 (527)
|+||+++|+++.++... +.||+||+||+|||+|++
T Consensus 82 d~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~------- 154 (315)
T 3uwl_A 82 DEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWET------- 154 (315)
T ss_dssp CHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEEC-------
T ss_pred cccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccC-------
Confidence 99999999988765310 128999999999999975
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHH
Q 009737 366 DYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445 (527)
Q Consensus 366 ~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~ 445 (527)
++|+++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|+
T Consensus 155 -~~g~~iDQi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasya 233 (315)
T 3uwl_A 155 -KDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233 (315)
T ss_dssp -TTSCEECHHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHH
T ss_pred -CCCCcchHHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccc
Q 009737 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKM 525 (527)
Q Consensus 446 ~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~ 525 (527)
+|++|||++||++||+|+|+++|+|||+||+|+|++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||
T Consensus 234 lL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~~ 313 (315)
T 3uwl_A 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPDKASVFDFDMEDIKVEGYDPHPTIKAPI 313 (315)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTTCCCGGGCCGGGEEEESCCCCCCCCCCC
T ss_pred HHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCCCCccccCCHHHEEEeCCCCCCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 009737 526 AV 527 (527)
Q Consensus 526 av 527 (527)
||
T Consensus 314 AV 315 (315)
T 3uwl_A 314 AV 315 (315)
T ss_dssp --
T ss_pred cC
Confidence 98
No 14
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=4.8e-100 Score=754.56 Aligned_cols=264 Identities=48% Similarity=0.877 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCccc
Q 009737 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (527)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~i 322 (527)
.|+||+++|++||++|+.++||||+||+|+||+||||||++|||++||||++||++++|||||++|+||+++|+++|++|
T Consensus 1 ~m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~i 80 (264)
T 3qj7_A 1 SMTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTI 80 (264)
T ss_dssp -CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccccc
Q 009737 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (527)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~ 402 (527)
||+|+ +++||+|++||+|||+|++ |+|+++|||++||++||+||+|||+|+++|||++++
T Consensus 81 Wd~wa------------~e~GdlG~vYG~qwr~~~~--------~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~ 140 (264)
T 3qj7_A 81 WDEWA------------SDTGELGPIYGVQWRSWPA--------PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIE 140 (264)
T ss_dssp TGGGC------------CTTSBCCSCHHHHHHHEEC--------TTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGG
T ss_pred chhhc------------ccCCCCccccchhheecCC--------CCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhc
Confidence 99997 5789999999999999985 568899999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHH
Q 009737 403 LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQ 482 (527)
Q Consensus 403 ~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~ 482 (527)
+|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++|
T Consensus 141 ~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~q 220 (264)
T 3qj7_A 141 RMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQ 220 (264)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 483 LQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 483 l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|+|+|+++|+|+| +++++|+||+.|||+|+||+|||+|||||||
T Consensus 221 L~R~p~~~P~l~i-~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 264 (264)
T 3qj7_A 221 LSREPRPYPKLLL-ADRDSIFEYTYEDIVVKNYDPHPAIKAPVAV 264 (264)
T ss_dssp HTSCCCCCCEEEE-ECCSSGGGCCGGGEEEESCCCCCCCCCC---
T ss_pred hcCCCCCCCEEEe-CCCCChhcCCHhHEEEECCcCCCccCccccC
Confidence 9999999999999 9999999999999999999999999999998
No 15
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=6.1e-97 Score=736.32 Aligned_cols=264 Identities=52% Similarity=0.935 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCcccc
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~~iW 323 (527)
|+||+++|++||++|+.++||||+||+|+||+++||||+++||++||||++||++++|||||++|+||+++|+++|++||
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~iW 80 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCCCceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCcccccc
Q 009737 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (527)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~~~~ 403 (527)
|+|+ +++|++|++||+|||+|+.. +|+++|||++||++||+||+|||+|+++|||+++++
T Consensus 81 d~~~------------~~~G~lG~vYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~~ 140 (264)
T 2g8o_A 81 DEWA------------DENGDLGPVYGKQWRAWPTP--------DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDK 140 (264)
T ss_dssp GGGC------------CTTSBCCSCHHHHHHHEEET--------TTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred hhcc------------CCCCCcccchhHHHhhccCC--------CCCchHHHHHHHHHHhcCCCCceEEEEecChhHhhc
Confidence 9998 46899999999999999753 467899999999999999999999999999999999
Q ss_pred cCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHHHHh
Q 009737 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (527)
Q Consensus 404 ~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (527)
|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 141 m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL 220 (264)
T 2g8o_A 141 MALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQL 220 (264)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCcceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 484 QKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 484 ~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 221 ~r~p~~~P~l~i~~~~~~~~d~~~~df~l~~Y~~hp~ik~~~av 264 (264)
T 2g8o_A 221 SREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI 264 (264)
T ss_dssp TSCCCCCCEEEECCCCSSTTCCCGGGEEEESCCCCCCCCCCCCC
T ss_pred ccCCCCCCeeecCCCCCchhcCChhHEEEeCCCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999998
No 16
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=1.7e-97 Score=744.78 Aligned_cols=267 Identities=48% Similarity=0.846 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhh------
Q 009737 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQE------ 317 (527)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~------ 317 (527)
|+||+++|++||++|+.+.||||+||+|+||+|+||||++|||++||||++||++++||||||+|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~gfPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~~ 80 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEec
Q 009737 318 -KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAW 396 (527)
Q Consensus 318 -~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w 396 (527)
+|++|||+|++++|+++ .+++|++|++||+|||+|+ ++|||++||++||+||+|||+|+++|
T Consensus 81 ~~gv~iWd~~~~~~~l~~----~~~~GdlG~vYG~qwR~~~-------------~~DQi~~vI~~Lk~nP~SRR~ivs~W 143 (286)
T 1tis_A 81 IQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDFG-------------GVDQIIEVIDRIKKLPNDRRQIVSAW 143 (286)
T ss_dssp SSSCCTTHHHHTTTTGGG----TCCTTBCCSCHHHHHHCBT-------------TBCHHHHHHHHHHHSTTCSCCBCCCC
T ss_pred ccCCcccccccccchhhh----cccCCcchhhhHHHHhcCC-------------cchHHHHHHHHHhcCCCCccEEEEec
Confidence 89999999999999987 3678999999999999996 48999999999999999999999999
Q ss_pred CcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccch
Q 009737 397 NPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHV 476 (527)
Q Consensus 397 ~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~ 476 (527)
||+++++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+
T Consensus 144 np~dl~~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~ 223 (286)
T 1tis_A 144 NPAELKYMALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHV 223 (286)
T ss_dssp CGGGGGGCSSCCSEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCC
T ss_pred ChhHhhcCCCCCceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcCCCCCCeEEeCCC------------CCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 477 RPLEEQLQKLPKPFPILKINPE------------KKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 477 ~~~~~~l~r~p~~~P~l~~~~~------------~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
|++++||+|+|+++|+|+||++ +++|+||++|||+|+||+|||+|||||||
T Consensus 224 e~v~~qL~R~p~~~P~l~i~~~~~~~~~~~~~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 286 (286)
T 1tis_A 224 EQCKEILRREPKELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp TTTGGGSSCCCCSCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred HHHHHHHcCCCCCCCeEEECCcccccccccccccCCchhcCCceeEEEeCCCCCCcCCcCccC
Confidence 9999999999999999999998 89999999999999999999999999998
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=2.1e-96 Score=758.39 Aligned_cols=267 Identities=53% Similarity=0.947 Sum_probs=239.9
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
.-.|+||+++|++||++|+.+.||||+||+|+||+|+||||++|||++||||++||++++||||||+|+||+++|+++|+
T Consensus 94 ~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~gv 173 (360)
T 3ix6_A 94 IGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGV 173 (360)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccc
Q 009737 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~ 400 (527)
+|||+|+ +++||+|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||++
T Consensus 174 ~iWd~wa------------~~~g~lG~vYG~qwR~~~~~--------~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~d 233 (360)
T 3ix6_A 174 TIWDEWA------------DENGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPAL 233 (360)
T ss_dssp CTTGGGC------------CTTSBCSSCHHHHHHHEECT--------TSCEECHHHHHHHHHHHCTTCSCCEEECCCHHH
T ss_pred Cccchhc------------ccCCCCccchhhhheeecCC--------CCCchHHHHHHHHHHhcCCCcceeEEEecChHH
Confidence 9999997 67899999999999999864 477899999999999999999999999999999
Q ss_pred ccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECcccccccchhhHH
Q 009737 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (527)
Q Consensus 401 ~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~ 480 (527)
+++|+|||||.++||+|++|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|+++
T Consensus 234 l~~mal~PCh~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~ 313 (360)
T 3ix6_A 234 VDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQAR 313 (360)
T ss_dssp HTTCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHH
T ss_pred hccCCCCCCcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 481 EQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 481 ~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
+||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 314 ~qL~R~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 360 (360)
T 3ix6_A 314 LQLTRTPKKLPVMHINPDVKDLFAFRFEDFRLDGYEADPTIKAPIAV 360 (360)
T ss_dssp HHTTSCCCCCCEEEECTTCCSGGGCCGGGEEEEC-------------
T ss_pred HHhcCCCCCCCEEEECCCCCChhcCCHhHEEEECCcCCCcCCccccC
Confidence 99999999999999999999999999999999999999999999998
No 18
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=2.4e-95 Score=728.19 Aligned_cols=266 Identities=38% Similarity=0.674 Sum_probs=257.8
Q ss_pred hhHHHHHHHHHHHHHCCccccC----------CCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHH-HHhCCC
Q 009737 242 HEEYLYLRLVQDIISDGNLKDD----------RTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLW-FISGST 310 (527)
Q Consensus 242 ~~~~~Yl~l~~~Il~~G~~~~d----------RtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW-~l~G~~ 310 (527)
++|+||+++|++||++|+.+.| |||+||+|+||+|+||| +++||++||||++||++++|||| |++|+|
T Consensus 2 ~~~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~fPllTtkk~~~k~~i~EllWifl~G~t 80 (278)
T 1bkp_A 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWKTAIKELLWIWQLKSN 80 (278)
T ss_dssp CHHHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSSCCCCSSSCCCHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-cccccccccccccHHhhHHHHHHHHHcCCC
Confidence 5799999999999999998876 89999999999999999 99999999999999999999999 999999
Q ss_pred ChhHhhhcCccccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcc
Q 009737 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRR 390 (527)
Q Consensus 311 ~~~~l~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR 390 (527)
|+++|+++|++|||+|+ +++|++|++||+|||+|+.. ++|+++|||++||++||+||+|||
T Consensus 81 n~~~L~~~gv~iWd~w~------------~~~gdlG~vYG~qwr~~~~~-------~~g~~iDQi~~vI~~Lk~nP~SRR 141 (278)
T 1bkp_A 81 DVNDLNMMGVHIWDQWK------------QEDGTIGHAYGFQLGKKNRS-------LNGEKVDQVDYLLHQLKNNPSSRR 141 (278)
T ss_dssp BHHHHHTTTCCTTGGGC------------CTTSBCBSCTHHHHHCCCEE-------ETTEEECHHHHHHHHHHHSTTCSC
T ss_pred cHHHHHHhCCCcccccc------------ccCCcccccccHhhhhccCC-------CCCcchHHHHHHHHHHhcCCCCCc
Confidence 99999999999999997 56899999999999999632 346679999999999999999999
Q ss_pred eEEEecCcccccccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHHHHHHHHHHHHHhcCCcceeEEEEECccc
Q 009737 391 IVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470 (527)
Q Consensus 391 ~ii~~w~p~~~~~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~H 470 (527)
+|+++|||+++++|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|
T Consensus 142 ~ivs~wnp~dl~~m~lpPC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaH 221 (278)
T 1bkp_A 142 HITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221 (278)
T ss_dssp CEEESCCTTTGGGBSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEE
T ss_pred EEEEecChhhhhccCCCCeeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHhhcCCCCCCeEEeCCCCCCCCCcccCCeEEeCCCCCCCCCccccC
Q 009737 471 VYRNHVRPLEEQLQKLPKPFPILKINPEKKDIDSFVAEDFKLIGYDPHQKIEMKMAV 527 (527)
Q Consensus 471 IY~~h~~~~~~~l~r~p~~~P~l~~~~~~~~~~d~~~~df~l~~Y~~~~~ik~~~av 527 (527)
||+||+|++++||+|+|+++|+|+||+++++|+||++|||+|+||+|||+|||||||
T Consensus 222 IY~nh~e~v~~qL~r~p~~~P~l~i~~~~~~~~d~~~~Df~l~~Y~~hp~ik~~~av 278 (278)
T 1bkp_A 222 VYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278)
T ss_dssp EEGGGHHHHHHHHHSCCCCCCEEEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred EcHHHHHHHHHHhcCCCCCCCEEEECCCCCchhhCCHhHEEEeCCCCCCcCcccccC
Confidence 999999999999999999999999999999999999999999999999999999998
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=7.6e-71 Score=545.41 Aligned_cols=220 Identities=22% Similarity=0.299 Sum_probs=209.4
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccccchHhHHHHHHhCCCChhHhhhcCc
Q 009737 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKALFWRGVVEELLWFISGSTNAKVLQEKDI 320 (527)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtG~~t~~i~g~~~~~dl~~~fP~lT~kk~~~k~~~~EllW~l~G~~~~~~l~~~~~ 320 (527)
.+.+++|++++++|+++|. +.||||+||+|+||+++|||. |++ +||++||++++|||||++|+||+++|+++++
T Consensus 6 ~t~~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~~~ 79 (246)
T 1b5e_A 6 MTVEEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGETP 79 (246)
T ss_dssp BCHHHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSSCC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhhcc
Confidence 4789999999999999995 999999999999999999982 999 7999999999999999999999999999999
Q ss_pred cccccccchhhHhhcCCCCCCCCCCCCccccccccccccccccccCCCCCcchHHHHHHHHHhcCCCCcceEEEecCccc
Q 009737 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (527)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~~ 400 (527)
+|||+|+ +++|++|++|| ||+|+. .++|||++||++||+||+|||+|+++|||.+
T Consensus 80 ~iwd~~~------------~~~g~lg~~YG--wR~~~~-----------~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp~~ 134 (246)
T 1b5e_A 80 KIWQQVA------------SSKGEINSNYG--WAIWSE-----------DNYAQYDMCLAELGQNPDSRRGIMIYTRPSM 134 (246)
T ss_dssp HHHHHHS------------CTTSBCSCCHH--HHHHCG-----------GGTCHHHHHHHHHHHCTTCSCCEEECCCTTH
T ss_pred hhhhhhc------------ccCCCCCCCCC--eeECCC-----------CCchHHHHHHHHHhcCCCCCeEEEEecCchh
Confidence 9999996 46899999999 999973 2589999999999999999999999999998
Q ss_pred cc-----ccCCCCceeEEEEEEeCCeEEEEEEeecccccccccchHH-----HHHHHHHHHHHh--cCCcceeEEEEECc
Q 009737 401 LK-----LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA-----SYALLTCMIAHV--CDLAPGDFIHVIGD 468 (527)
Q Consensus 401 ~~-----~~~l~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~Ni~-----~~~~L~~~iA~~--~gl~~G~~~~~~~~ 468 (527)
+. +|+|||||.++||+|++|+|+|++||||||+++|+|||++ +|++|++|||++ ||+++|+|+|+++|
T Consensus 135 ~~d~~~~~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gd 214 (246)
T 1b5e_A 135 QFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGS 214 (246)
T ss_dssp HHHTTGGGCCCCCCEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEE
T ss_pred hcccccccccCCceeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEe
Confidence 64 6999999999999999999999999999999999999999 999999999999 99999999999999
Q ss_pred ccccccchhhHHHHhhcCCCCCC
Q 009737 469 AHVYRNHVRPLEEQLQKLPKPFP 491 (527)
Q Consensus 469 ~HIY~~h~~~~~~~l~r~p~~~P 491 (527)
+|||+||+|++++||+|+|++.+
T Consensus 215 aHIY~nh~e~~~~~L~r~~~~~~ 237 (246)
T 1b5e_A 215 LHVYSRHFYLVDHWWKTGETHIS 237 (246)
T ss_dssp EEEEGGGHHHHHHHHHHCCSCCC
T ss_pred EEEcHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999998655
No 20
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=100.00 E-value=3.9e-43 Score=346.83 Aligned_cols=186 Identities=37% Similarity=0.634 Sum_probs=157.8
Q ss_pred CCCCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcc------ccCCCCCcEEEEccccccccCCCCCCCCCC
Q 009737 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (527)
Q Consensus 16 ~~~~~mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~------~~~p~~~~~vIMGRkTyeslp~~~~pl~~r 89 (527)
...+.||+|++|||+|.||+||.+|+|||++|+||+||+++|++ .++|++.++||||||||||+|.+++|||+|
T Consensus 21 ~~~~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R 100 (240)
T 3rg9_A 21 ISRPPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNR 100 (240)
T ss_dssp --CCCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTS
T ss_pred ccCCCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCC
Confidence 45678999999999999999999999999999999999999987 456788899999999999999666899999
Q ss_pred cEEEEcCCCCCCC-----C--------CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 009737 90 LNVVLTRSGSFDI-----A--------TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (527)
Q Consensus 90 ~~iVlSrt~~~~~-----~--------~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~---lvDe 153 (527)
.||||||+..... + ..+++.+++|+++|++.+++.+...+.++||||||++||+++|+++ +||+
T Consensus 101 ~nIVlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~ 180 (240)
T 3rg9_A 101 LNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQA 180 (240)
T ss_dssp EEEEECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHHHHHhcCccccCCE
Confidence 9999999974310 0 0356889999999999997631000146899999999999999888 9999
Q ss_pred EEEEEEC-ccccccccC--CCCCCCC-----ceeeeeecC---ceeCCccEEEEEEEEc
Q 009737 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFP---IVENNIRYCLSTYVRV 201 (527)
Q Consensus 154 l~lT~I~-~~~~GD~fF--P~~~~~~-----f~l~~~~~~---~~e~~~~~~f~~Y~r~ 201 (527)
++||+|+ ..++||+|| |+++.+. |++++.+.. .++|++.|+|++|+|+
T Consensus 181 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~f~~y~r~ 239 (240)
T 3rg9_A 181 IHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239 (240)
T ss_dssp EEEEEEESCCSSCCEECCCCCTTCCCTTSCCEEEEEECCCEECSSTTCCEEEEEEEEEC
T ss_pred EEEEEEcCCCcCcceecCCCCCChhhcccCceEEEEeeccccccCCCCCceEEEEEEeC
Confidence 9999999 889999999 9998877 999875432 2358999999999997
No 21
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=7.9e-43 Score=338.19 Aligned_cols=182 Identities=38% Similarity=0.640 Sum_probs=156.2
Q ss_pred CCCCceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccc---cCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 009737 18 PNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT---SDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (527)
Q Consensus 18 ~~~mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~---~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVl 94 (527)
|++|++|++|+|+|+||+||.+|+|||++|+|++||+++|+++ ++|++.++|||||||||++|.++|||++|+||||
T Consensus 1 m~~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVl 80 (206)
T 3nzb_X 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVI 80 (206)
T ss_dssp CCCCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEE
T ss_pred CCCCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEE
Confidence 5679999999999999999999999999999999999999853 3456679999999999999865689999999999
Q ss_pred cCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCC---CCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCC-
Q 009737 95 TRSGSFDIATVENVVICGSIGSALELLAASPYCL---SIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP- 170 (527)
Q Consensus 95 Srt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~---~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP- 170 (527)
||+... ...+++.+++|+++|++.+++....+ ++++||||||++||++||++++||+++||+||..++||+|||
T Consensus 81 Sr~~~~--~~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~gd~~FP~ 158 (206)
T 3nzb_X 81 TRNESL--DLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPL 158 (206)
T ss_dssp CSSCCC--CCCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCCCSEECSS
T ss_pred ccCCCC--CCCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccCCCccCCc
Confidence 999753 12357889999999999998641000 247899999999999999999999999999999999999999
Q ss_pred CCCCC----Cceeeeee------------cCceeCCccEEEEEEEEc
Q 009737 171 SIDSS----VFQPWYSS------------FPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 171 ~~~~~----~f~l~~~~------------~~~~e~~~~~~f~~Y~r~ 201 (527)
.++.. .|++++.+ ..+++|++.|.|++|+|+
T Consensus 159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~y~f~~y~r~ 205 (206)
T 3nzb_X 159 KFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD 205 (206)
T ss_dssp CTTSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECC
T ss_pred ccCcccccCCcEEEEEeeccccccccccccccccCCeeEEEEEEEEc
Confidence 88753 69987643 235789999999999985
No 22
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=6.1e-41 Score=314.24 Aligned_cols=158 Identities=36% Similarity=0.637 Sum_probs=144.6
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||++| +|||+|+||||||+...
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 72 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGY-- 72 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhc-------CCEEEEcchHHhhhh---hccCCCeEEEECCCCcc--
Confidence 699999999999999999999999999999999998 799999999999997 79999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|++++++.+++. ++|||+||+++|++|| ++|||++||+||..++||+|||.++.+.|++++.
T Consensus 73 -~~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~ip~~~~Gd~~Fp~~~~~~~~l~~~ 143 (165)
T 3s9u_A 73 -HVEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFV 143 (165)
T ss_dssp -CCTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEE
T ss_pred -CCCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHHHHH--hhCCEEEEEEccccccCCCcCCCCChHHCEEEEE
Confidence 346788889999999998764 6899999999999999 8999999999999999999999999889999876
Q ss_pred ecC--ceeCCccEEEEEEEEc
Q 009737 183 SFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (527)
+.. .++|++.|.|++|+|+
T Consensus 144 ~~~~~~~~~~~~~~f~~y~r~ 164 (165)
T 3s9u_A 144 EKGLTDEKNPYTYYYHVYEKQ 164 (165)
T ss_dssp EECCCSSSSCSCEEEEEEEEC
T ss_pred EeccccCCCCceEEEEEEEEC
Confidence 542 4578899999999996
No 23
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=100.00 E-value=9.5e-41 Score=316.12 Aligned_cols=160 Identities=31% Similarity=0.547 Sum_probs=143.8
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
++++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+||||||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~-------g~~vIMGRkTyesi~---~plp~R~niVlSr~~~~-- 69 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-------GKPIVMGRRTFDSIG---KPLPHRRNIVITQQKNL-- 69 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhc-------CCEEEEechHHhhhh---hccCCCeEEEEcCCCCc--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|+++|++.+++. ++||||||++||+++| ++||+++||+||..++||+|||.++...|++++.
T Consensus 70 -~~~~v~v~~sl~eal~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~w~l~~~ 140 (178)
T 3tq8_A 70 -IIEGCDIFYSLDDALSALTKE------PEVIIIGGARIFKEAL--PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQ 140 (178)
T ss_dssp -CCTTSEEESSHHHHHHHTTTC------SEEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCTTSEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhCC------CCEEEECCHHHHHHHH--HhCCEEEEEEccccccccCcCCCCChHHCEEEEE
Confidence 346788889999999998763 7999999999999999 5999999999999999999999999888999876
Q ss_pred ec--CceeCCccEEEEEEEEccc
Q 009737 183 SF--PIVENNIRYCLSTYVRVRS 203 (527)
Q Consensus 183 ~~--~~~e~~~~~~f~~Y~r~~~ 203 (527)
+. ..++|++.|+|++|+|+.+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~~ 163 (178)
T 3tq8_A 141 IKHERDEKNPYPFQFLELRRLEN 163 (178)
T ss_dssp EEECCC--CCSCEEEEEEEECCC
T ss_pred EeccccccCCccEEEEEEEECCc
Confidence 53 2356889999999999853
No 24
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=5.2e-41 Score=313.85 Aligned_cols=158 Identities=34% Similarity=0.583 Sum_probs=143.4
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
++++|+|+|+||+||.+|+|||++|+|++||+++|+ +++||||||||||++ +|||+|+||||||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~-------g~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 69 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATL-------GKPIVMGRNTFESIG---RPLPGRLNIVLSRQTDY-- 69 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECCCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhc-------CcEEEEEchHHhhhh---hhcCCCeEEEEcCCCCC--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999754
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (527)
..+++.+++|++++++.+++. ++|||+||+++|++|| ++||+++||+||..++||+|||+++.+.|++++.
T Consensus 70 -~~~~~~v~~s~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~gd~~Fp~~~~~~w~~~~~ 140 (162)
T 3ia4_A 70 -QPEGVTVVATLEDAVVAAGDV------EELMIIGGATIYNQCL--AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEH 140 (162)
T ss_dssp -CCTTSEEESSHHHHHHHHTTC------SEEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhCC------CCEEEECCHHHHHHHH--HhCCEEEEEEccccccccccCCCCChHHCEEEEE
Confidence 346778999999999999753 7899999999999999 5999999999999999999999999888999865
Q ss_pred ec--CceeCCccEEEEEEEEc
Q 009737 183 SF--PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~--~~~e~~~~~~f~~Y~r~ 201 (527)
+. ..++|++.|.|++|+|+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~ 161 (162)
T 3ia4_A 141 ESYAADDKNPHNYRFSLLERV 161 (162)
T ss_dssp EEECCBTTBCSCEEEEEEEEC
T ss_pred EeccccCCCCccEEEEEEEEC
Confidence 43 23468889999999996
No 25
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=1.3e-40 Score=310.21 Aligned_cols=156 Identities=35% Similarity=0.652 Sum_probs=141.5
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
|++|+|+|+||+||++|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+||||||+. .
T Consensus 2 i~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~-------~~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~--- 67 (159)
T 3dau_A 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIILSSQP-G--- 67 (159)
T ss_dssp EEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSSC-C---
T ss_pred EEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhc-------CCeEEEechHHhhcc---cccCCCEEEEECCCC-C---
Confidence 89999999999999999999999999999999998 789999999999997 699999999999997 4
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|+++|++.++. .++|||+||+++|+++| ++||+++||+||..++||+|||.++.+.|++++.+
T Consensus 68 ~~~~~~v~~s~~~al~~~~~------~~~i~iiGG~~iy~~~l--~~~D~l~lT~i~~~~~Gd~~Fp~~~~~~~~~~~~~ 139 (159)
T 3dau_A 68 TDDRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYEQFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSE 139 (159)
T ss_dssp SCTTSEEESSHHHHHHTTCS------CSCEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHhcC------CCCEEEECCHHHHHHHH--hhCCEEEEEEcccccCccccCCCCChHHCEEEEEE
Confidence 34678889999999998753 47899999999999999 69999999999999999999999998889998654
Q ss_pred cC--ceeCCccEEEEEEEEc
Q 009737 184 FP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (527)
.. .++|++.|.|++|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 3dau_A 140 FHDADAQNSHSYCFEILERR 159 (159)
T ss_dssp EECCBTTBSSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEC
Confidence 32 3568899999999985
No 26
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=100.00 E-value=5e-40 Score=313.64 Aligned_cols=178 Identities=35% Similarity=0.618 Sum_probs=156.8
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 009737 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (527)
Q Consensus 21 mrki~livA~s~dG~IG~~g~LPW-~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~ 99 (527)
.|+|++++|+|+||+||.+|+||| ++|+|+++|++.|++..+|++.++|||||||||+++.++||||+|+|||+||+..
T Consensus 1 ~r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~ 80 (186)
T 1kmv_A 1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK 80 (186)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCS
T ss_pred CceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCc
Confidence 378999999999999999999999 9999999999999876677888899999999999985468999999999999975
Q ss_pred CCCCCCCCE-EEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCce
Q 009737 100 FDIATVENV-VICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178 (527)
Q Consensus 100 ~~~~~~~~v-~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~ 178 (527)
. ..+++ ++.+|++++++.|++.++..++++|||+||+++|++||++++|||++||++|..++||+|||.++...|+
T Consensus 81 ~---~~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d~~Fp~~~~~~~~ 157 (186)
T 1kmv_A 81 E---PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157 (186)
T ss_dssp S---CCTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCE
T ss_pred c---CCCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHHHHhcCCCCCEEEEEEeCcccCCCeECCCCChhHcE
Confidence 3 33466 8889999999999875322346899999999999999999999999999999999999999999878899
Q ss_pred eeeee-----cCceeCCccEEEEEEEEc
Q 009737 179 PWYSS-----FPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 179 l~~~~-----~~~~e~~~~~~f~~Y~r~ 201 (527)
+++.. ...+++++.|+|++|+|+
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~f~~y~r~ 185 (186)
T 1kmv_A 158 LLPEYPGVLSDVQEEKGIKYKFEVYEKN 185 (186)
T ss_dssp ECSCCTTCCCSCEEETTEEEEEEEEEEC
T ss_pred EEEeccccccccccCCCceEEEEEEEEC
Confidence 98652 235688999999999996
No 27
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.3e-39 Score=311.59 Aligned_cols=162 Identities=31% Similarity=0.537 Sum_probs=146.5
Q ss_pred CceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009737 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 21 mrki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~ 100 (527)
||+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||+++. ||||+|+|||+||+...
T Consensus 22 ~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~-------~~~vIMGRkTyesi~~--~plp~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 22 TKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDGMGR--RLLPKRETLILTRNPEE 92 (190)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHTTT--CCCTTCEEEEECCSCCS
T ss_pred ceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhc-------CCeEEEcCcchhhcCc--cCCCCCEEEEEcCCCCC
Confidence 78899999999999999999999999999999999998 8999999999999973 79999999999999754
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCC-CCCCCcee
Q 009737 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQP 179 (527)
Q Consensus 101 ~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~-~~~~~f~l 179 (527)
..+++.+++|++++++.+++. +++|||+||+++|++|| ++|||++||+||...+||+|||. ++...|++
T Consensus 93 ---~~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~~~l--~liDel~lt~ip~~g~Gd~lFp~~~~~~~~~l 162 (190)
T 3ix9_A 93 ---KIDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQAFE--PYLDEVIVTHIHARVEGDTYFPAEFDLSLFET 162 (190)
T ss_dssp ---CCSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCCGGGEEE
T ss_pred ---CCCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHHHHH--hhCCEEEEEEeCcccccCCcCCCCCCccccEE
Confidence 335677889999999999875 47899999999999999 69999999999999999999999 88778999
Q ss_pred eeeecC--ceeCCccEEEEEEEEc
Q 009737 180 WYSSFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 180 ~~~~~~--~~e~~~~~~f~~Y~r~ 201 (527)
++.+.. .++|++.|+|++|+|+
T Consensus 163 v~~~~~~~~~~~~~~~~f~~y~r~ 186 (190)
T 3ix9_A 163 VSSKFYTKDEKNPYDFTIQYRKRK 186 (190)
T ss_dssp EEEEEECCBTTBCSCEEEEEEEEC
T ss_pred EEEEeccCCCcCCceEEEEEEEEe
Confidence 876432 3467889999999997
No 28
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=100.00 E-value=1.3e-39 Score=304.53 Aligned_cols=159 Identities=28% Similarity=0.486 Sum_probs=143.9
Q ss_pred EEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCC
Q 009737 25 QVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIAT 104 (527)
Q Consensus 25 ~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~~ 104 (527)
++|+|+|+||+||++|+|||++|+|++||+++|+ +++|||||||||+++. +|||+|+|||+||+... .
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~-------~~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~---~ 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-------GKIMVVGRRTYESFPK--RPLPERTNVVLTHQEDY---Q 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTT-------TSEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTC---C
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhc-------CCeEEEecchhhhccc--ccCCCCcEEEEcCCCCC---C
Confidence 5899999999999999999999999999999997 8999999999999973 69999999999999854 3
Q ss_pred CCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeeec
Q 009737 105 VENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF 184 (527)
Q Consensus 105 ~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~~ 184 (527)
++++.+++|++++++.++++ ++++|||+||+++|+++| ++|||++||+||..++||+|||.++...|++++.+.
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~----~~~~i~viGG~~l~~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~~~l~~~~~ 143 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQH----LDQELVIAGGAQIFTAFK--DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRT 143 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHC----CSSCEEECCCHHHHHHTG--GGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEE
T ss_pred CCCEEEECCHHHHHHHHhcC----CCCCEEEECCHHHHHHHH--hhCCEEEEEEecccccccCcCCCCChhHcEEEEEEc
Confidence 56777779999999999986 368999999999999999 799999999999999999999999877899987654
Q ss_pred -CceeCCccEEEEEEEEc
Q 009737 185 -PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 185 -~~~e~~~~~~f~~Y~r~ 201 (527)
..++|++.|.|++|+|+
T Consensus 144 ~~~~~~~~~~~f~~y~r~ 161 (162)
T 3dfr_A 144 VEDTNPALTHTYEVWQKK 161 (162)
T ss_dssp ECCSSGGGCEEEEEEEEC
T ss_pred ccccCCCceEEEEEEEEC
Confidence 34568889999999996
No 29
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=3.3e-39 Score=318.25 Aligned_cols=174 Identities=33% Similarity=0.522 Sum_probs=152.1
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhcccc--------------------------------------CC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITS--------------------------------------DA 63 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW-~lpeD~~~F~~~t~~~~--------------------------------------~p 63 (527)
+.++++|++.+|+||++|+||| ++|+||+||+++|++++ .+
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 4678899999999999999999 99999999999997421 23
Q ss_pred CCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHH
Q 009737 64 GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (527)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~ 143 (527)
+.+++||||||||||+|.++||||+|+||||||+.... ..++++.+++|+++|++.+++. ++++|||+||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~-~~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKE-DVKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTT-TCCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 44799999999999998555799999999999997431 1256788889999999999875 368999999999999
Q ss_pred HHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 144 ~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
++|++++||+++||+||..++||+|||.++...|++++.+....+|++.|+|++|+|+
T Consensus 181 ~~L~~glvDel~lT~ip~~~gGD~~FP~~d~~~~~lv~~~~~~~~~~~~~~f~~y~r~ 238 (238)
T 2bl9_A 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238 (238)
T ss_dssp HHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCEEETTEEEEEEEEEEC
T ss_pred HHhcccCCCEEEEEEeccccCCceeCCCCCchhcEEEEEEecccCCCccEEEEEEEeC
Confidence 9999999999999999999999999999987789999877767789999999999985
No 30
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=8.8e-38 Score=293.41 Aligned_cols=160 Identities=39% Similarity=0.642 Sum_probs=139.3
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
++++++|+|+||+||.+|+|||++|+|+++|++.|. +++|||||||||+++.++||||+|+|||+||+...
T Consensus 5 ~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~-- 75 (167)
T 2w3w_A 5 EVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF-- 75 (167)
T ss_dssp CCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhc-------CCeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC--
Confidence 389999999999999999999999999999999997 78999999999999854589999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cccccCCCCCCCCcee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQP 179 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~---~GD~fFP~~~~~~f~l 179 (527)
..+++.+++|+++++ .+++ ++++|||+||+++|++||+ +|||++||++|..+ +||+|||.++.+ |++
T Consensus 76 -~~~~~~~~~~~~~~l-~l~~-----~~~~i~ViGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~~l 145 (167)
T 2w3w_A 76 -VAEGARVAGSLEAAL-AYAG-----SDPAPWVIGGAQIYLLALP--HATRCEVTEIEIDLRRDDDDALAPALDDS-WVG 145 (167)
T ss_dssp -CCTTSEEESSHHHHH-HHTT-----TCSSCEEEECHHHHHHHGG--GCSEEEEEEEECCCCCCTTSEECCCCCTT-CEE
T ss_pred -CCCCEEEECCHHHHH-Hhhc-----CCCeEEEEchHHHHHHHHH--HCCEEEEEEEEeecCCCCccEeCCCCCcc-cEE
Confidence 345778888999999 5553 3689999999999999994 99999999999999 899999999877 998
Q ss_pred eeeecCceeCCccEEEEEEEEc
Q 009737 180 WYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 180 ~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
........++++.|.|++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~f~~y~r~ 167 (167)
T 2w3w_A 146 ETGEWLASRSGLRYRFHSYRRD 167 (167)
T ss_dssp EECCCEECTTSCEEEEEEEEC-
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 3333334566799999999984
No 31
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=4e-37 Score=287.89 Aligned_cols=158 Identities=35% Similarity=0.599 Sum_probs=141.9
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
+++++|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||+++ ||||+|++||+||+...
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~--- 68 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSF--- 68 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC---
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhc-------CCEEEECCcHHhcCC---CCCCCCeEEEEcCCCCc---
Confidence 88999999999999999999999999999999997 899999999999997 89999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeeee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~~ 183 (527)
..+++.+++|++++++.+++. +++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++..
T Consensus 69 ~~~~~~~~~~~~~~l~~l~~~-----~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~~~ 141 (164)
T 1zdr_A 69 RPEGCLVLHSLEEVKQWIASR-----ADEVFIIGGAELFRATM--PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYT 141 (164)
T ss_dssp CCTTCEEECSHHHHHHHHHTC-----CSCEEEEECHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHHhcC-----CCeEEEECcHHHHHHHH--HhCCEEEEEEeccccCCcEECCCCChhHcEEEEEE
Confidence 345777788999999999863 57899999999999999 59999999999999999999999987789998664
Q ss_pred c--CceeCCccEEEEEEEEc
Q 009737 184 F--PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 184 ~--~~~e~~~~~~f~~Y~r~ 201 (527)
. ..++++++|+|.+|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 142 PGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp ECCCSSSSCSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEc
Confidence 3 23457789999999996
No 32
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=2.9e-38 Score=317.71 Aligned_cols=180 Identities=29% Similarity=0.504 Sum_probs=153.0
Q ss_pred CceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhccccC----------------------------CCCCcEEEE
Q 009737 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSD----------------------------AGKRNAVIM 71 (527)
Q Consensus 21 mrki~livA~s~dG~IG~~g~LPW-~lpeD~~~F~~~t~~~~~----------------------------p~~~~~vIM 71 (527)
-+++++|+|++.||+||.+|.||| ++|+||+||+++|++++. ++.+++|||
T Consensus 25 ~~~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIM 104 (280)
T 1j3k_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (280)
T ss_dssp SCGGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEE
T ss_pred cccEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEE
Confidence 345678899999999999999999 999999999999974221 233699999
Q ss_pred ccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCc
Q 009737 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151 (527)
Q Consensus 72 GRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lv 151 (527)
||||||++|.++||||+|++|||||+.... ..++++.+++|++++++.|++. ++++|||+||++||++||++++|
T Consensus 105 GRkTyEsip~~~~PLp~R~nIVlSr~~~~~-~~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~~~L~~glv 179 (280)
T 1j3k_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (280)
T ss_dssp EHHHHHHSCGGGCSCTTSEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred cchHhhhhcccccCcCCCeEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHhcCccC
Confidence 999999998556899999999999997431 1246788888999999999875 36899999999999999999999
Q ss_pred CEEEEEEECccccccccCCCCCCCCceeeeeecCceeCCccEEEEEEEEcccch
Q 009737 152 DAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAA 205 (527)
Q Consensus 152 Del~lT~I~~~~~GD~fFP~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~~~~~ 205 (527)
|+++||+||..++||+|||.++...|++++.+....++++.|+|.+|+|+++.+
T Consensus 180 Del~LT~Ip~~lgGD~~FP~~d~~~~~lv~~~~~~~~~g~~~~f~~Y~R~~~~~ 233 (280)
T 1j3k_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKM 233 (280)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC--
T ss_pred CEEEEEEeccccCCceeCCCCChhhcEEEEEEeeccCCCceEEEEEEEECCccc
Confidence 999999999999999999999878899987765455688899999999986443
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=100.00 E-value=5.2e-37 Score=285.78 Aligned_cols=155 Identities=36% Similarity=0.549 Sum_probs=138.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~ 102 (527)
++++++|+|+||+||.+|+|||++|+|++||+++|. +++|||||||||+++ ||||+|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~-- 69 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG---KPLPNRRNVVLTSDTSF-- 69 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhc-------CCEEEECCChhhccc---ccCCCCEEEEEcCCCCc--
Confidence 489999999999999999999999999999999997 899999999999996 79999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeeee
Q 009737 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (527)
Q Consensus 103 ~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~~ 182 (527)
..+++.++++++++++. +++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++.
T Consensus 70 -~~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~Gd~~Fp~~~~~~~~l~~~ 137 (159)
T 2w9h_A 70 -NVEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASS 137 (159)
T ss_dssp -CCTTCEEECSGGGGGGS---------CSCEEEEECHHHHHHHT--TTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEE
T ss_pred -CCCCeEEECCHHHHHhc---------CCcEEEEChHHHHHHHH--HhCCEEEEEEecccccCCeeCCCCChhHcEEEEE
Confidence 34567788899999875 26899999999999999 5999999999999999999999998778999876
Q ss_pred ecC--ceeCCccEEEEEEEEc
Q 009737 183 SFP--IVENNIRYCLSTYVRV 201 (527)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (527)
+.. .++++++|+|.+|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~r~ 158 (159)
T 2w9h_A 138 VEGKLDEKNTIPHTFLHLIRK 158 (159)
T ss_dssp EECCCBTTBCSCEEEEEEEEC
T ss_pred EeccccccCCccEEEEEEEEC
Confidence 432 3347789999999986
No 34
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=9.7e-37 Score=284.49 Aligned_cols=157 Identities=28% Similarity=0.499 Sum_probs=139.2
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 009737 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (527)
Q Consensus 23 ki~livA~s~dG~IG~~g~LPW-~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~ 101 (527)
++++++|+|+||+||.+|++|| ++|+|++||+++|+ +++|||||||||+++ ||||+|++||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~- 70 (162)
T 1vdr_A 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESMR---DDLPGSAQIVMSRSERS- 70 (162)
T ss_dssp CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTS-------SSCEEEEHHHHHHTT---TSCCSSSEEEECSSCCC-
T ss_pred EEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhC-------CCEEEEcchHHhhCC---ccCCcCeEEEEcCCCcc-
Confidence 5999999999999999999999 99999999999997 899999999999997 89999999999999751
Q ss_pred CCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccccccCCCCCCCCceeee
Q 009737 102 IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWY 181 (527)
Q Consensus 102 ~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~~GD~fFP~~~~~~f~l~~ 181 (527)
..++++.+++|++++++.+++. ++++|||+||+++|++|| ++|||++||++|..++||+|||.++...|++++
T Consensus 71 -~~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~ 143 (162)
T 1vdr_A 71 -FSVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYALFQ--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDA 143 (162)
T ss_dssp -CCSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHHHHG--GGCSEEEEEEEEEECCCSEECCCCCTTTEEEEE
T ss_pred -cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHH--HhCCEEEEEEEccccccCEECCCCCchHCEEEE
Confidence 1355677778999999999875 368999999999999999 599999999999999999999998877899886
Q ss_pred eecCceeCCccEEEEEEEEcc
Q 009737 182 SSFPIVENNIRYCLSTYVRVR 202 (527)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y~r~~ 202 (527)
... ..+|+|.+|+|++
T Consensus 144 ~~~-----~~~~~~~~Y~~~~ 159 (162)
T 1vdr_A 144 ETD-----HEGFTLQEWVRSA 159 (162)
T ss_dssp EEE-----CSSCEEEEEEEC-
T ss_pred Eec-----CCCEEEEEEEECC
Confidence 543 1278999999873
No 35
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=9.7e-37 Score=284.15 Aligned_cols=154 Identities=36% Similarity=0.673 Sum_probs=136.0
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 009737 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (527)
Q Consensus 24 i~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~~~ 103 (527)
+++++|+|+||+||.+|+|||++|+|+++|+++|. +++|||||||||+++.++||||+|+|||+||+...
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~--- 71 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADF--- 71 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTC---
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHC-------CCEEEEeChHHhhcccccCCCCcCEEEEEeCCCCc---
Confidence 88999999999999999999999999999999997 68999999999999855589999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cccccCCCCCCCCceee
Q 009737 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQPW 180 (527)
Q Consensus 104 ~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~---~GD~fFP~~~~~~f~l~ 180 (527)
..+++.+++|++++++ . ++|||+||+++|++||+ +|||++||++|..+ +||+|||.++.+ | ++
T Consensus 72 ~~~~~~~~~~~~~~l~----~------~~i~viGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~-~~ 137 (159)
T 1df7_A 72 MASGAEVVGSLEEALT----S------PETWVIGGGQVYALALP--YATRCEVTEVDIGLPREAGDALAPVLDET-W-RG 137 (159)
T ss_dssp CCTTSEEESSHHHHTT----S------SSEEECCCHHHHHHHGG--GCSEEEEEEECCCCCCCTTCEECCCCCTT-C-EE
T ss_pred CCCCEEEECCHHHHhc----C------CcEEEECcHHHHHHHHH--HCCEEEEEEEeeecCCCCccEeCCCCCcc-c-EE
Confidence 3457778889999987 2 58999999999999994 99999999999999 899999999876 9 77
Q ss_pred eeec-CceeCCccEEEEEEEEc
Q 009737 181 YSSF-PIVENNIRYCLSTYVRV 201 (527)
Q Consensus 181 ~~~~-~~~e~~~~~~f~~Y~r~ 201 (527)
+.+. ...++++.|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 1df7_A 138 ETGEWRFSRSGLRYRLYSYHRS 159 (159)
T ss_dssp EECCCEECTTSCEEEEEEEECC
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 6543 34566799999999984
No 36
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=100.00 E-value=2.4e-36 Score=289.67 Aligned_cols=172 Identities=40% Similarity=0.652 Sum_probs=144.8
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009737 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 22 rki~livA~s~dG~I-G~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~ 100 (527)
+++++++|+|+||+| |.+|+|||++++|++||+++|++..++++.++|||||||||+++.+.|||++|++||+||+...
T Consensus 4 ~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~ 83 (192)
T 1aoe_A 4 PNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYEN 83 (192)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCCC
T ss_pred CEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCcc
Confidence 679999999976655 7899999999999999999998544556679999999999999754469999999999998642
Q ss_pred CCCCCCCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----ccccccCCCCCCCC
Q 009737 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IECDTFIPSIDSSV 176 (527)
Q Consensus 101 ~~~~~~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~----~~GD~fFP~~~~~~ 176 (527)
. ..++++.+++|++++++. ++ ++++|||+||+++|++||++++|||++||+||.. ++||+|||. +...
T Consensus 84 ~-~~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-~~~~ 155 (192)
T 1aoe_A 84 E-IIDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLES 155 (192)
T ss_dssp E-EEETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECCC-CGGG
T ss_pred c-cCCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHHHHhcCCCCCEEEEEEEEcccCCCCccceECCC-ChHH
Confidence 1 124578899999999987 53 3689999999999999999999999999999999 789999994 3467
Q ss_pred ceeeeee------------cCceeCCccEEEEEEEEc
Q 009737 177 FQPWYSS------------FPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 177 f~l~~~~------------~~~~e~~~~~~f~~Y~r~ 201 (527)
|++++.+ ...++|++.|.|++|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~y~r~ 192 (192)
T 1aoe_A 156 WTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp EEECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred cEEEeeeccccccccccccccccCCCeeEEEEEEEEC
Confidence 9987543 244678999999999984
No 37
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=100.00 E-value=1.3e-36 Score=298.63 Aligned_cols=178 Identities=35% Similarity=0.568 Sum_probs=146.8
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 009737 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (527)
Q Consensus 22 rki~livA~s~dG~I-G~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~ 100 (527)
+++++|+|+|+||+| |.+|+|||++++|++||+++|++.++|++.++|||||||||++|.+.+||++|+|||+||+...
T Consensus 4 ~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~~ 83 (227)
T 3cse_A 4 VPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDG 83 (227)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSSS
T ss_pred cEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCcc
Confidence 569999999976655 7899999999999999999998666677789999999999999854359999999999999743
Q ss_pred CCC-CCCCEEEECCHHHHHHHHhcCC-CCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----cc-ccccCC-CC
Q 009737 101 DIA-TVENVVICGSIGSALELLAASP-YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IE-CDTFIP-SI 172 (527)
Q Consensus 101 ~~~-~~~~v~v~~sle~ai~~lk~~~-~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~----~~-GD~fFP-~~ 172 (527)
... .++++++++|+++|++.|++.. ...++++|||+||++||++|| ++|||++||+||.. ++ ||+||| .+
T Consensus 84 ~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G~~~gD~~Fp~~~ 161 (227)
T 3cse_A 84 ELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQE 161 (227)
T ss_dssp SCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSCCCCCSEECCHHH
T ss_pred ccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCCCccccccCCCCC
Confidence 110 1356889999999999998630 001357999999999999999 99999999999998 66 999999 67
Q ss_pred CCCCceeeeee--------------c--------------CceeCCccEEEEEEEEcc
Q 009737 173 DSSVFQPWYSS--------------F--------------PIVENNIRYCLSTYVRVR 202 (527)
Q Consensus 173 ~~~~f~l~~~~--------------~--------------~~~e~~~~~~f~~Y~r~~ 202 (527)
+...|++ +.+ . .++|+|+.|.|++|+|+-
T Consensus 162 ~~~~w~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~f~~~~r~~ 218 (227)
T 3cse_A 162 LEQRFYD-NSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKL 218 (227)
T ss_dssp HHHHEEE-CGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ChhhcEe-chhhhhhhcCccccCCccccccccccccccccceeECCEEEEEEEEEEec
Confidence 6566877 321 1 457899999999999973
No 38
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.97 E-value=3.3e-31 Score=254.26 Aligned_cols=130 Identities=28% Similarity=0.456 Sum_probs=110.9
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-CChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 009737 24 YQVVVAATR--------DMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (527)
Q Consensus 24 i~livA~s~--------dG~IG~~g~LPW-~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVl 94 (527)
|++|+|+|+ ||+||.+|+||| ++|+|++||+++|+ +++|||||||||++| +|||+|+|||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-------GTIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHT-------TSEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhc-------CCEEEEchhHhhhcc---cccCCCcEEEE
Confidence 899999999 999999999999 89999999999997 799999999999997 48999999999
Q ss_pred cCCCCCCC--CCC-----------------CCEEEECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEE
Q 009737 95 TRSGSFDI--ATV-----------------ENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155 (527)
Q Consensus 95 Srt~~~~~--~~~-----------------~~v~v~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~ 155 (527)
||+..... ... ++.++.+|++++++.+++. +++|||+||+++|++|| ++|||++
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~~-----~~~I~ViGG~~ly~~~L--~lvDel~ 144 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQ-----NSKVSVIGGPALLYAAL--PYADEVV 144 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEECT-----TSCEEEEECHHHHHHHG--GGCSEEE
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHcC-----CCcEEEECcHHHHHHHH--HhCCEEE
Confidence 99852210 011 1224667777777777642 58899999999999999 8999999
Q ss_pred EEEEC--ccccccccCC
Q 009737 156 ITEIE--TRIECDTFIP 170 (527)
Q Consensus 156 lT~I~--~~~~GD~fFP 170 (527)
||+|| ..++||+|||
T Consensus 145 lT~ip~~~~~~gd~~F~ 161 (193)
T 1juv_A 145 VSRIVKRHRVNSTVQLD 161 (193)
T ss_dssp EEEEEESSCCCCSEEEC
T ss_pred EEEeccccccCCCeecC
Confidence 99998 4569999999
No 39
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.96 E-value=9.6e-29 Score=231.36 Aligned_cols=162 Identities=27% Similarity=0.332 Sum_probs=136.3
Q ss_pred ceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 009737 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (527)
Q Consensus 22 rki~livA~s~dG~IG~~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~pl~~r~~iVlSrt~~~~ 101 (527)
||+++++|+|+||+||..++ ||+.++|+++|++++.. .++|||||+||++++ ||+++++++|+||+...
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~- 69 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKT- 69 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCC-
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCc-
Confidence 57999999999999998666 99999999999999963 799999999999985 79999999999998641
Q ss_pred CCCCCCEEEEC-CHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cccccCCCCCC-CCce
Q 009737 102 IATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS-SVFQ 178 (527)
Q Consensus 102 ~~~~~~v~v~~-sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~GD~fFP~~~~-~~f~ 178 (527)
...+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++||.++. ..|+
T Consensus 70 -~~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~lG~g~~~f~~~~~~~~l~ 144 (168)
T 1cz3_A 70 -SNNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLK 144 (168)
T ss_dssp -CSCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEEE
T ss_pred -cCCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCCCEEEEEEeceecCCCCcCCCCCCcccccE
Confidence 1234676666 999999999876 47899999999999999999999999999999988 68999998764 3688
Q ss_pred eeeeecCceeCCccEEEEEEEEcc
Q 009737 179 PWYSSFPIVENNIRYCLSTYVRVR 202 (527)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r~~ 202 (527)
+++... .++ +++.+.+|.+.+
T Consensus 145 l~~~~~--~~~-~~~~~l~Y~~~~ 165 (168)
T 1cz3_A 145 LLEMRR--LNE-RGTLFLKYSVEK 165 (168)
T ss_dssp EEEEEE--CSS-SCCEEEEEEEC-
T ss_pred EeeeEE--eCC-CCEEEEEEEEcc
Confidence 875532 222 256999999864
No 40
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.96 E-value=8.2e-29 Score=234.27 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=137.7
Q ss_pred CceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHhccccCCCCCcEEEEccccccccC----CCCCCCCCCc
Q 009737 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHRPLPGRL 90 (527)
Q Consensus 21 mrki~livA~s~dG~IG-~~g~LPW~lpe-----D~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp----~~~~pl~~r~ 90 (527)
|||+++++|+|+||+|| .+|++||+.++ +.++|.+.+.. .++|||||+||++++ ...||+++++
T Consensus 3 M~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~~ 76 (178)
T 3jtw_A 3 ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADRQ 76 (178)
T ss_dssp CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTSE
T ss_pred ceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCCC
Confidence 99999999999999999 59999998765 57889988853 789999999999985 1347999999
Q ss_pred EEEEcCCCCCCCCCCCCEEEEC-CHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-ccccc
Q 009737 91 NVVLTRSGSFDIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (527)
Q Consensus 91 ~iVlSrt~~~~~~~~~~v~v~~-sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~GD~f 168 (527)
+||+||+... ..+++.++. |++++++.|++. ++++|||+||+++|++||++++|||+++|++|..+ +|+++
T Consensus 77 ~iV~s~~~~~---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~~G~g~~~ 149 (178)
T 3jtw_A 77 TYIVTSHLGE---DTDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRL 149 (178)
T ss_dssp EEEECSSCCC---CCSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEES
T ss_pred EEEEeCCCCC---CCCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHHHHHHCCCceEEEEEEecEEEcCCCcc
Confidence 9999998754 345676655 999999999976 47899999999999999999999999999999998 89999
Q ss_pred CCCCCC-CCceeeeeecCceeCCccEEEEEEEE
Q 009737 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 169 FP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (527)
||.++. ..|++++... . + +..+.+|.|
T Consensus 150 f~~~~~~~~l~l~~~~~--~-~--~~v~l~Y~r 177 (178)
T 3jtw_A 150 FDRLEEQVPVRLIDVYQ--K-N--ELVYSIYQR 177 (178)
T ss_dssp SSCCCSCCCEEEEEEEE--E-T--TEEEEEEEE
T ss_pred cCCCCcCcceEEeEEEE--E-C--CEEEEEEEe
Confidence 998764 5788876543 2 2 468888876
No 41
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=1.2e-26 Score=223.09 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=132.0
Q ss_pred CceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHH-HhccccCCCCCcEEEEccccccccCCC--CCCCCCCcE
Q 009737 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKE-ITQITSDAGKRNAVIMGRKTWESIPLE--HRPLPGRLN 91 (527)
Q Consensus 21 mrki~livA~s~dG~IG-~~g~LPW~lpe-----D~~~F~~-~t~~~~~p~~~~~vIMGRkTyeslp~~--~~pl~~r~~ 91 (527)
|+++++++|+|+||+|| .+|++||+.++ |..+|.+ ++. .++|||||+|||+++.. .||+ ++++
T Consensus 19 ~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~-------~~ailmGr~T~e~~~~~~~~~P~-~~~~ 90 (197)
T 3ky8_A 19 GMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER-------VDGLVMGRNTLDMVLSFDCDWPY-SKPV 90 (197)
T ss_dssp TCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH-------CSEEEEEHHHHHHHCCTTCCCCC-SSCE
T ss_pred CCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh-------CCEEEEcHHHhHhHhhcCCCCCC-CCcE
Confidence 89999999999999998 69999998764 3344555 444 89999999999999742 3787 4689
Q ss_pred EEEcCCCCCCCCCC-CCEEE-ECCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-ccccc
Q 009737 92 VVLTRSGSFDIATV-ENVVI-CGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (527)
Q Consensus 92 iVlSrt~~~~~~~~-~~v~v-~~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~GD~f 168 (527)
||+||+.......+ +++.+ ..|++++++.|++. +.++|||+||+++ ++||++++|||+++|++|..+ +|+++
T Consensus 91 iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~G~~~ 165 (197)
T 3ky8_A 91 FVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVPL 165 (197)
T ss_dssp EEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH-HHHHHTTCCCEEEEEEESEECSSSEES
T ss_pred EEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH-HHHHhCCCCCEEEEEEeeEEECCCCcc
Confidence 99999975311111 36765 47999999999876 4789999999999 999999999999999999998 79999
Q ss_pred CCCCCC-CCceeeeeecCceeCCccEEEEEEEEcc
Q 009737 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVRVR 202 (527)
Q Consensus 169 FP~~~~-~~f~l~~~~~~~~e~~~~~~f~~Y~r~~ 202 (527)
||.++. ..|++++... .++ ++.+..|.+.+
T Consensus 166 f~~~~~~~~l~l~~~~~--~~~--g~v~l~Y~~~~ 196 (197)
T 3ky8_A 166 FGELESSLSFNVIKSEV--VLD--SLTQTTYHRKR 196 (197)
T ss_dssp CCCCSSCEEEEEEEEEE--ETT--TEEEEEEEECC
T ss_pred cCCCCcCcceEEEEEEE--eCC--CEEEEEEEEcc
Confidence 998763 4788876542 333 56899998863
No 42
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.93 E-value=3.2e-26 Score=215.85 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=131.5
Q ss_pred CCceEEEEEEEeCCCeee-cCCCCCCCChh---h--HHHHHHHhccccCCCCCcEEEEccccccccCC-CCCCCCCCcEE
Q 009737 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS---D--LKFFKEITQITSDAGKRNAVIMGRKTWESIPL-EHRPLPGRLNV 92 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG-~~g~LPW~lpe---D--~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~-~~~pl~~r~~i 92 (527)
.|+++++++|+|+||+|| .+|++||+.++ + +++|.++++. .++|||||+||+++.. ..||+ ++++|
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~~~~P~-~~~~i 74 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEHGDWSY-DQPAW 74 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHSSCCCC-SSCEE
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcCCCCCC-CCCEE
Confidence 488999999999999996 69999998652 3 6789988753 7999999999999952 12554 88999
Q ss_pred EEcCCC-CCCCCCCCCEEEE-CCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cccccC
Q 009737 93 VLTRSG-SFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFI 169 (527)
Q Consensus 93 VlSrt~-~~~~~~~~~v~v~-~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~GD~fF 169 (527)
|+||+. +. ..++++.++ .|++++++.|++.+ +.++|||+||+++|++||++++|||+++|++|..+ +|+++|
T Consensus 75 V~s~~~~~~--~~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~g~~~f 149 (178)
T 2xw7_A 75 VLTHRPEIA--AESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVL 149 (178)
T ss_dssp EECSCGGGC--BTTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHHHHHHTTCCCEEEEEEESEECSSSSBSS
T ss_pred EEeCCCCCc--CCCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHHHHHHCCCCeEEEEEEeceEecCCCcCC
Confidence 999983 22 123456555 79999999998752 23899999999999999999999999999999998 799999
Q ss_pred CCCCCCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 170 PSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 170 P~~~~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
|..+ .|++++... . + ...+.+|.++
T Consensus 150 ~~~~--~l~l~~~~~--~-~--~~v~l~y~~~ 174 (178)
T 2xw7_A 150 PMRS--EWVLDDCAR--N-G--DFVCARWKRP 174 (178)
T ss_dssp CSCE--ECEEEEEEE--E-T--TEEEEEEECC
T ss_pred CCCC--ceEEEeEEE--e-C--CeEEEEEEEc
Confidence 9876 688875543 2 3 4688899875
No 43
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.92 E-value=3.8e-25 Score=210.29 Aligned_cols=168 Identities=14% Similarity=0.182 Sum_probs=131.8
Q ss_pred CCCCCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCCCCC---------
Q 009737 16 TQPNPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP--------- 85 (527)
Q Consensus 16 ~~~~~mrki~livA~s~dG~IG~-~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~~~p--------- 85 (527)
|...+|+++++++|+|+||+||. +|++||++++|..+|.++++. .++|||||+||++++. .||
T Consensus 3 ~~~~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~-~~p~~~Pd~~~~ 75 (189)
T 2gd9_A 3 TNNLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQ-YIPKNEDPDTEK 75 (189)
T ss_dssp CCCCCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTT-C----------C
T ss_pred CCCCCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhh-cCCCCCCccccc
Confidence 34566899999999999999986 899999976655578887643 7999999999999963 244
Q ss_pred -CC----CCcEEEEcCCCCCCCCCCCCEEEE-CCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEE
Q 009737 86 -LP----GRLNVVLTRSGSFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEI 159 (527)
Q Consensus 86 -l~----~r~~iVlSrt~~~~~~~~~~v~v~-~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I 159 (527)
+. ++++||+|++... ..+ ++.+. .|++++++.|++. ++++|||+||+++|++||++++|||++++++
T Consensus 76 ~~~~~~~~~~~iV~t~~~~~--~~~-~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~~~~l~~glvDel~l~~~ 148 (189)
T 2gd9_A 76 ELWKLVHSKKKYVFSRTQNE--IDN-QAIFINDNILEEVNKLKKN----PGKDIWLYGGASLITTFINLGLVDEFRLSIH 148 (189)
T ss_dssp CHHHHHHHSEEEEECCEEET--TTT-EEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHHHHHHHTTCCCEEEEEEC
T ss_pred hhHHHhCCCCEEEEeCCCCC--CCC-CeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHHHHHHHCCCceEEEEEEe
Confidence 22 7899999998532 122 56554 4999999999986 4789999999999999999999999999999
Q ss_pred Cccc-cccccCCCCC-CCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 160 ETRI-ECDTFIPSID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 160 ~~~~-~GD~fFP~~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
|..+ +|+++||.++ ...|++++... .++ .+.+..|.++
T Consensus 149 P~~lG~g~~~f~~~~~~~~l~l~~~~~--~~~--~~~~l~y~~~ 188 (189)
T 2gd9_A 149 PVVLGEGKPLFIDVKQRINLKMVNTRT--FSS--GVVQIVYHWN 188 (189)
T ss_dssp SEECSSSEESSCSCCSCEECEEEEEEE--CTT--SCEEEEEEC-
T ss_pred CEEeCCCCccCCCCCCCcceEEEEEEE--cCC--CEEEEEEEeC
Confidence 9988 6999999864 34688775532 233 3477788753
No 44
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.88 E-value=1.8e-22 Score=198.20 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=119.3
Q ss_pred CceEEEEEEEeCCCeeec---CCCCC-------CCChh-hH-H------HHHH-------------------HhccccCC
Q 009737 21 KRSYQVVVAATRDMGIGK---DGKLP-------WKLPS-DL-K------FFKE-------------------ITQITSDA 63 (527)
Q Consensus 21 mrki~livA~s~dG~IG~---~g~LP-------W~lpe-D~-~------~F~~-------------------~t~~~~~p 63 (527)
|+|+++.+++|+||+|+. ++.+- |..+. ++ + +|.+ ...
T Consensus 20 m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~----- 94 (231)
T 3kgy_A 20 MSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFE----- 94 (231)
T ss_dssp SCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHH-----
T ss_pred cceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHh-----
Confidence 899999999999999974 22222 43222 11 1 2222 222
Q ss_pred CCCcEEEEccccccccCCC---CCCCCCCcEEEEcCCCCCCCCCCCCE---EEECCHHHHHHHHhcCCCCCCCCcEEEEe
Q 009737 64 GKRNAVIMGRKTWESIPLE---HRPLPGRLNVVLTRSGSFDIATVENV---VICGSIGSALELLAASPYCLSIEKVFVIG 137 (527)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~---~~pl~~r~~iVlSrt~~~~~~~~~~v---~v~~sle~ai~~lk~~~~~~~~~~I~ViG 137 (527)
..+++||||||||+++.. .+|+ +|++||+||++.......+++ ++.++++++++.|++. .++++|||+|
T Consensus 95 -~i~~vIMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~~~~~~~~v~~v~~~l~eal~~l~~~---~~~~~I~V~G 169 (231)
T 3kgy_A 95 -RTGAHIMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREA---AGERDIRISG 169 (231)
T ss_dssp -TEEEEEEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHH---HTTSEEEEEE
T ss_pred -cCCEEEEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCccccCCCcEEEEEcCCHHHHHHHHHhh---cCCCcEEEeC
Confidence 268999999999999621 1234 899999999974311111233 3558999999999752 1368999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECccc-cccccCCCCCC--CCceeeeeecCceeCCccEEEEEEEE
Q 009737 138 GGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS--SVFQPWYSSFPIVENNIRYCLSTYVR 200 (527)
Q Consensus 138 Ga~iy~~~L~~~lvDel~lT~I~~~~-~GD~fFP~~~~--~~f~l~~~~~~~~e~~~~~~f~~Y~r 200 (527)
|+++|++||++++|||++||++|..+ +|+++||.++. ..|++.+. ...+| ++..+|.|
T Consensus 170 G~~l~~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~~~~~~l~l~~~---~~~~G--vv~l~Y~r 230 (231)
T 3kgy_A 170 GANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRV---LASPT--ATHLRYVR 230 (231)
T ss_dssp CHHHHHHHHHTTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEE---EECSS--CEEEEEEE
T ss_pred CHHHHHHHHhCCCCCEEEEEEeceeccCCCccCCCCCCccceeEEEEE---EcCCC--EEEEEEEe
Confidence 99999999999999999999999998 89999999874 35776532 23554 48889987
No 45
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.69 E-value=1.4e-16 Score=166.90 Aligned_cols=168 Identities=16% Similarity=0.126 Sum_probs=123.3
Q ss_pred CCCceEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCCC---CC------C--
Q 009737 19 NPKRSYQVVVAATRDMGIG-KDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HR------P-- 85 (527)
Q Consensus 19 ~~mrki~livA~s~dG~IG-~~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~---~~------p-- 85 (527)
.+|+++++.+|+|+||+|+ .+|+.+|. -+++.++|.++... .++|||||+||+..... .| |
T Consensus 155 ~~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~r 228 (373)
T 2b3z_A 155 TGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVR 228 (373)
T ss_dssp HSSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEE
T ss_pred ccchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeE
Confidence 4588999999999999998 58999997 47788888887653 79999999999985210 01 1
Q ss_pred --------CC---------CCcEEEEcCCCCCCC----CCCCCEEEE------CCHHHHHHHHhcCCCCCCCCcEEEEec
Q 009737 86 --------LP---------GRLNVVLTRSGSFDI----ATVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGG 138 (527)
Q Consensus 86 --------l~---------~r~~iVlSrt~~~~~----~~~~~v~v~------~sle~ai~~lk~~~~~~~~~~I~ViGG 138 (527)
+| +++++|+|++..... -.+.++.+. .|+.++++.|++. +.++|||.||
T Consensus 229 vVld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG 304 (373)
T 2b3z_A 229 VILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGG 304 (373)
T ss_dssp EEECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEEC
T ss_pred EEEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEh
Confidence 11 567888887652100 012345443 5899999999986 4789999999
Q ss_pred HHHHHHHhcCCCcCEEEEEEECcccc---ccccCCCC-----C-CCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 139 GQILSEALNAPECDAIHITEIETRIE---CDTFIPSI-----D-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 139 a~iy~~~L~~~lvDel~lT~I~~~~~---GD~fFP~~-----~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
++++++||++++|||++++++|..+. |-++|+.. + ...|++++... .+++ ....|.++
T Consensus 305 ~~l~~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~--~g~d---v~l~y~~~ 371 (373)
T 2b3z_A 305 SAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQ--IGRD---IKLTAKPT 371 (373)
T ss_dssp HHHHHHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEE--ETTE---EEEEEEEC
T ss_pred HHHHHHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEE--ECCc---EEEEEEEC
Confidence 99999999999999999999999883 67888753 1 23566665432 2332 35667654
No 46
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.66 E-value=3.4e-15 Score=144.93 Aligned_cols=166 Identities=11% Similarity=0.106 Sum_probs=116.8
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccC----C-----CCCCCC-
Q 009737 20 PKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----L-----EHRPLP- 87 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp----~-----~~~pl~- 87 (527)
+++++++.+|+|+||+|+. +|.. |. -+++.+++.++... .++|||||+||+... . ..+|+.
T Consensus 2 ~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~v 74 (219)
T 2azn_A 2 KKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRI 74 (219)
T ss_dssp CCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEE
T ss_pred CCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEE
Confidence 4788999999999999975 7878 96 35566677776653 799999999999651 1 123431
Q ss_pred -----------------CCcEEEEcCCCCCCCC----C---CCCEEEE------CCHHHHHHHHhcCCCCCCCCcEEEEe
Q 009737 88 -----------------GRLNVVLTRSGSFDIA----T---VENVVIC------GSIGSALELLAASPYCLSIEKVFVIG 137 (527)
Q Consensus 88 -----------------~r~~iVlSrt~~~~~~----~---~~~v~v~------~sle~ai~~lk~~~~~~~~~~I~ViG 137 (527)
..+.+|+|++...... . ..++.+. .++.++++.|++. +.++|+|.|
T Consensus 75 V~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveG 150 (219)
T 2azn_A 75 VVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEG 150 (219)
T ss_dssp EECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEE
T ss_pred EECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEee
Confidence 2445666655321000 0 1144333 4899999999986 478999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECcccc---ccccCCCCC------CCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 138 GGQILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 138 Ga~iy~~~L~~~lvDel~lT~I~~~~~---GD~fFP~~~------~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
|+++..+||++++|||+++++.|..+. |-++|+... ...|++++... .+++ .+..|.++
T Consensus 151 G~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~--~~~~---v~l~y~~~ 218 (219)
T 2azn_A 151 GGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYR--LGEG---IVLEFKVK 218 (219)
T ss_dssp CHHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred CHHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEE--ECCe---EEEEEEEC
Confidence 999999999999999999999998884 457887642 23577765432 2332 46778764
No 47
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.47 E-value=8.4e-13 Score=139.58 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=110.4
Q ss_pred CCCceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhccccCCCCCcEEEEccccccccC----CCCC--------
Q 009737 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHR-------- 84 (527)
Q Consensus 19 ~~mrki~livA~s~dG~IG~-~g~LPW~l-peD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp----~~~~-------- 84 (527)
..|+++++.+|+|+||+|+. +|+..|.. +++.+++.++... .++|||||+||+... ...|
T Consensus 171 ~~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~ 244 (402)
T 2g6v_A 171 TGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQA 244 (402)
T ss_dssp SSSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTS
T ss_pred cccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCcccccccccccccccc
Confidence 45889999999999999975 88899973 5556666666553 789999999999651 1112
Q ss_pred ---------CC-----------------C-CCcEEEEcCCCCCCCCCCCCEEEE--C------CHHHHHHHHhcCCCCCC
Q 009737 85 ---------PL-----------------P-GRLNVVLTRSGSFDIATVENVVIC--G------SIGSALELLAASPYCLS 129 (527)
Q Consensus 85 ---------pl-----------------~-~r~~iVlSrt~~~~~~~~~~v~v~--~------sle~ai~~lk~~~~~~~ 129 (527)
|+ . +.+.+|+|++.... .-..++.+. . |+.++++.|++. +
T Consensus 245 ~~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~-~l~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g 319 (402)
T 2g6v_A 245 LYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSR-EWPETVRTLLIPEHKGHLDLVVLMMQLGKQ----Q 319 (402)
T ss_dssp SCCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCS-CCCTTEEEEECCEETTEECHHHHHHHHHHT----T
T ss_pred cccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchh-hhcCCCEEEEecCCCCCCCHHHHHHHHHhC----C
Confidence 10 0 34567777654210 011245433 3 899999999986 5
Q ss_pred CCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-c-ccccCCCC-----C-CCCceeeeee
Q 009737 130 IEKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPSI-----D-SSVFQPWYSS 183 (527)
Q Consensus 130 ~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~-GD~fFP~~-----~-~~~f~l~~~~ 183 (527)
.++|+|.||+++..+||++++|||+++++.|..+ . |-++|+.. . ...|++++..
T Consensus 320 ~~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~~ 381 (402)
T 2g6v_A 320 INSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIR 381 (402)
T ss_dssp CCEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEE
T ss_pred CCEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCCCcCCCCCccccccccccccEEeEEE
Confidence 7899999999999999999999999999999888 3 77888763 1 2357776543
No 48
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.47 E-value=1.8e-12 Score=135.25 Aligned_cols=166 Identities=20% Similarity=0.207 Sum_probs=116.3
Q ss_pred CCCceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhccccCCCCCcEEEEccccccccCCC---CCCC-CCCcEEE
Q 009737 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HRPL-PGRLNVV 93 (527)
Q Consensus 19 ~~mrki~livA~s~dG~IG~-~g~LPW~lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~---~~pl-~~r~~iV 93 (527)
.+++.+++.+|+|+||+|+. +|+..|..+++.+++.++... .++|||||+||+..... .++. .+...||
T Consensus 157 ~~rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvV 230 (360)
T 2hxv_A 157 KKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVI 230 (360)
T ss_dssp HSSCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEE
T ss_pred cchhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEE
Confidence 45788999999999999985 888899655556666666543 78999999999864210 1122 2234599
Q ss_pred EcCCCCCCCC-----CC-CCEEE-E-----------------CCHHHHHHHHhcCCCCCCCCcEEEEecHHHHHHHhcCC
Q 009737 94 LTRSGSFDIA-----TV-ENVVI-C-----------------GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP 149 (527)
Q Consensus 94 lSrt~~~~~~-----~~-~~v~v-~-----------------~sle~ai~~lk~~~~~~~~~~I~ViGGa~iy~~~L~~~ 149 (527)
+|++...... .. ...++ . .|+.++++.|++. ++++|+|.||+++..+||+++
T Consensus 231 ld~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~~sfL~ag 306 (360)
T 2hxv_A 231 LDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVFSEFLDHA 306 (360)
T ss_dssp ECTTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHHHHHGGGC
T ss_pred ECCCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHHHHHHHCC
Confidence 9987543111 00 12222 2 3899999999987 578999999999999999999
Q ss_pred CcCEEEEEEECccc-cccccCCC----CC-CCCceeeeeecCceeCCccEEEEEEEEc
Q 009737 150 ECDAIHITEIETRI-ECDTFIPS----ID-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (527)
Q Consensus 150 lvDel~lT~I~~~~-~GD~fFP~----~~-~~~f~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (527)
||+++++.|..+ +|-++|.. +. ...|++++... .+++ ....|.++
T Consensus 307 --DEl~l~iaP~llG~G~~lf~~~~~~~~~~~~L~l~~~~~--~g~d---v~l~y~~~ 357 (360)
T 2hxv_A 307 --DVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEF--SDSE---FLVEMRPC 357 (360)
T ss_dssp --SEEEEEEESCCCSSSEETTTTCCCCTTSCCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred --CEEEEEEcceEEcCCCcccccccccccccccceEeEEEE--ECCc---EEEEEEeC
Confidence 999999999888 55578854 22 23577765432 2332 46677654
No 49
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.40 E-value=1.2e-11 Score=123.90 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=115.9
Q ss_pred CCceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhccccCCCCCcEEEEccccccccCCC--C----CC------
Q 009737 20 PKRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--H----RP------ 85 (527)
Q Consensus 20 ~mrki~livA~s~dG~IG~-~g~LPW~-lpeD~~~F~~~t~~~~~p~~~~~vIMGRkTyeslp~~--~----~p------ 85 (527)
+++++++.+|+|+||+ +. +|...|. -+++.+++.++... .++|||||+||+.-... . +|
T Consensus 32 ~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~ 104 (270)
T 2p4g_A 32 NEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARKENYGPVVLPHGIKNQRQKL 104 (270)
T ss_dssp HCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhhhCCcccccccccccccccc
Confidence 4788999999999999 65 8888896 35666667665543 78999999999843100 0 00
Q ss_pred --CCCCcEEEEcCCCCCCCC-----C-CC-----------------------------CE--EEE----CCHHHHHHHHh
Q 009737 86 --LPGRLNVVLTRSGSFDIA-----T-VE-----------------------------NV--VIC----GSIGSALELLA 122 (527)
Q Consensus 86 --l~~r~~iVlSrt~~~~~~-----~-~~-----------------------------~v--~v~----~sle~ai~~lk 122 (527)
-+..+.+|++++...... . .+ ++ +.+ .++.++++.|+
T Consensus 105 g~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~ 184 (270)
T 2p4g_A 105 GRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALH 184 (270)
T ss_dssp TCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred CCCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHH
Confidence 012244555554321000 0 00 22 222 26889999998
Q ss_pred cCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-c-ccccCCC--CC-CCCceeeeeecCcee-CCccEEEE
Q 009737 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPS--ID-SSVFQPWYSSFPIVE-NNIRYCLS 196 (527)
Q Consensus 123 ~~~~~~~~~~I~ViGGa~iy~~~L~~~lvDel~lT~I~~~~-~-GD~fFP~--~~-~~~f~l~~~~~~~~e-~~~~~~f~ 196 (527)
+. +.++|+|.||+++..+||++++|||+++++.|..+ . |-++|+. .. ...|++++... .. + +..+.
T Consensus 185 ~~----g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~~~~~~~~l~l~~~~~--~~~~--g~v~l 256 (270)
T 2p4g_A 185 AR----RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLS--SSPN--GLIFS 256 (270)
T ss_dssp TT----TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEE--ECTT--CCEEE
T ss_pred HC----CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCcCcCcCcceEEEEEEE--eccC--CEEEE
Confidence 76 57899999999999999999999999999999988 3 6788876 22 34688875532 22 3 35889
Q ss_pred EEEEccc
Q 009737 197 TYVRVRS 203 (527)
Q Consensus 197 ~Y~r~~~ 203 (527)
.|.+.+.
T Consensus 257 ~Y~~~~~ 263 (270)
T 2p4g_A 257 RYKVIRD 263 (270)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9988644
No 50
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=20.75 E-value=1.2e+02 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=33.9
Q ss_pred HHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEeCC
Q 009737 452 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKINP 497 (527)
Q Consensus 452 A~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~ 497 (527)
|...|+++|..+..++..-+-.-..+.+.++++..+-..-.+.+..
T Consensus 40 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r 85 (91)
T 1g9o_A 40 AEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDP 85 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence 7889999999999999999877656667777776554333444443
No 51
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=20.30 E-value=88 Score=24.44 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHhcCCcceeEEEEECcccccccchhhHHHHhhcCCCCCCeEEe
Q 009737 451 IAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPILKI 495 (527)
Q Consensus 451 iA~~~gl~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~ 495 (527)
-|...|+++|..+..++...+-.-..+.+..+|++.+-..-.+.+
T Consensus 41 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~ 85 (95)
T 3r68_A 41 PAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 85 (95)
T ss_dssp HHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 377889999999999999998876667777888774433333333
Done!