BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009738
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
+S G+K+R++I+ +L P +LLLDE TS LD+ + + V + L + +DGR V+ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHRL 542
Query: 95 SS 96
S+
Sbjct: 543 ST 544
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
+S G+K+R++I+ +L P +LLLDE TS LD+ + + V + L + +DGR V+ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRL-MDGRTVLVIAHHL 573
Query: 95 SS 96
S+
Sbjct: 574 ST 575
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S G+++R+SI+ + +P VLL DEPTS LD V+++++ +A +G+ +V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
A E + N +S G+++R++I+ + P ++L DEPT LDS + + Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKL 191
Query: 81 -ALDGRIVVCSIH 92
DG+ VV H
Sbjct: 192 NEEDGKTVVVVTH 204
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
A E + N +S G+++R++I+ + P ++L D+PT LDS + ++Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 81 -ALDGRIVVCSIH 92
DG+ VV H
Sbjct: 192 NEEDGKTVVVVTH 204
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
+DEI + + + +G A A+ IG +S+GEK+R+ I+ + QP VL+LDEP
Sbjct: 135 DDEIRNEAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPA 189
Query: 63 SGLD 66
+GLD
Sbjct: 190 AGLD 193
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
T++G+ + +S G+K+R++I+ ++ QP +LLLDE TS LD+ S V + L A +G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG 1220
Query: 85 RIVVCSIHQPSS 96
R + H+ S+
Sbjct: 1221 RTCIVIAHRLST 1232
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 1 MTNDEINDIVEET-----IIKMGLQACAETKIGNWHLRG--ISSGEKKRLSISIEILTQP 53
+T DEI V+E I+K+ Q +T +G RG +S G+K+R++I+ ++ P
Sbjct: 491 VTMDEIEKAVKEANAYDFIMKLPHQF--DTLVGE---RGAQLSGGQKQRIAIARALVRNP 545
Query: 54 TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96
+LLLDE TS LD+ S V+Q A +GR + H+ S+
Sbjct: 546 KILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHRLST 587
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
T++G+ + +S G+K+R++I+ ++ QP +LLLDE TS LD+ S V + L A +G
Sbjct: 1163 TRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK-AREG 1220
Query: 85 RIVVCSIHQPSS 96
R + H+ S+
Sbjct: 1221 RTCIVIAHRLST 1232
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 13/103 (12%)
Query: 1 MTNDEINDIVEET-----IIKMGLQACAETKIGNWHLRG--ISSGEKKRLSISIEILTQP 53
+T DEI V+E I+K+ Q +T +G RG +S G+K+R++I+ ++ P
Sbjct: 491 VTMDEIEKAVKEANAYDFIMKLPHQF--DTLVGE---RGAQLSGGQKQRIAIARALVRNP 545
Query: 54 TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96
+LLLDE TS LD+ S V+Q A +GR + H+ S+
Sbjct: 546 KILLLDEATSALDTESE-AVVQAALDKAREGRTTIVIAHRLST 587
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
ET++G+ + +S G+K+R++I+ ++ P +LLLDE TS LD+ S V + L A +
Sbjct: 1208 ETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR-ARE 1265
Query: 84 GRIVVCSIHQ 93
GR + H+
Sbjct: 1266 GRTCIVIAHR 1275
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
+S G+K+R++I+ ++ P +LLLDE TS LD+ S V Q L A GR + H+
Sbjct: 555 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRL 613
Query: 95 SSHXXXXXXXXXXXSNGETIYFGDAK 120
S+ NG+ + GD +
Sbjct: 614 ST--IRNADLIISCKNGQVVEVGDHR 637
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
T++G ++ IS G+++RL+I+ L P +L+LDE T+ LDS S V + L + + G
Sbjct: 131 TEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL-MKG 188
Query: 85 RIVVCSIHQPSS 96
R + H+ S+
Sbjct: 189 RTTLVIAHRLST 200
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S G+ +R++I+ + +P ++L DEPTS LD V+ V+K +A +G +V H+
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 3 NDEINDIVEETIIKMGLQACAE---TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLD 59
NDE+ + I + A E T++G L+ +S GEK+R++I+ IL P ++LLD
Sbjct: 157 NDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLD 215
Query: 60 EPTSGLDSAS 69
E TS LD+++
Sbjct: 216 EATSALDTSN 225
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S G+ +R++I+ + +P ++L DEPTS LD V+ V+K +A +G +V H+
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 197
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
A E + N +S G+++R++I+ + P ++L D+PT LDS + ++Q+LK +
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 81 -ALDGRIVVCSIH 92
DG+ VV H
Sbjct: 192 NEEDGKTVVVVTH 204
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV 76
M L +T++G ++ +S G+K+RLSI+ L P +L+LDE TS LD S + +
Sbjct: 461 MNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 77 LKCIALDGRIVVCSIHQPSS 96
L ++ D R + H+ S+
Sbjct: 520 LDVLSKD-RTTLIVAHRLST 538
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEP 61
++ EI ++VE GL + ++ + S G ++L I+ ++ P + +LDEP
Sbjct: 119 SSSEIEEMVERATEIAGLGEKIKDRVSTY-----SKGMVRKLLIARALMVNPRLAILDEP 173
Query: 62 TSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
TSGLD +A V ++LK + +G ++ S H
Sbjct: 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHN 205
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 15/82 (18%)
Query: 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRG-----ISSGEKKRLSISIEILTQPTV 55
+ DEI V+ + + G++ HL+ +S G+KKR++I+ ++ +P V
Sbjct: 115 LPEDEIRKRVDNALKRTGIE----------HLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164
Query: 56 LLLDEPTSGLDSASAFFVIQVL 77
L+LDEPT+GLD ++++L
Sbjct: 165 LILDEPTAGLDPMGVSEIMKLL 186
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S GE++R++I+ + +P +L DEPT LDSA+ V+ + I G +V H+
Sbjct: 141 LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHE 199
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 199
Query: 94 PSS 96
S+
Sbjct: 200 LST 202
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
DE+ V E + +GL ++ N +S G+K+R++I+ + + P VLL DE TS
Sbjct: 115 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 64 GLDSASAFFVIQVLKCI 80
LD A+ ++++LK I
Sbjct: 170 ALDPATTRSILELLKDI 186
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 199
Query: 94 PSS 96
S+
Sbjct: 200 LST 202
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+ H+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 197
Query: 94 PSS 96
S+
Sbjct: 198 LST 200
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+ H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHR 203
Query: 94 PSS 96
S+
Sbjct: 204 LST 206
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSI 91
+ +S G+++R++I ++ +P+V LLDEP S LD+A I++ + GR ++
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRC----- 146
H + + I DA A+ G P P+D F+
Sbjct: 192 HD----------QVEAMTLADKIVVLDAGR----VAQVGKPLELYHYPADRFVAGFIGSP 237
Query: 147 -INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
+N KV +++ Q E+PM + Q++L E
Sbjct: 238 KMNFLPVKVTATAI-DQVQVELPMPNRQQVWLPVE 271
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSI 91
+ +S G+++R++I ++ +P+V LLDEP S LD+A I++ + GR ++
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRC----- 146
H + + I DA A+ G P P+D F+
Sbjct: 192 HD----------QVEAMTLADKIVVLDAGR----VAQVGKPLELYHYPADRFVAGFIGSP 237
Query: 147 -INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
+N KV +++ Q E+PM + Q++L E
Sbjct: 238 KMNFLPVKVTATAI-DQVQVELPMPNRQQVWLPVE 271
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLD 66
++++E+ K+ + + N + +S G K+R+ I++ +L P VL+LDEPTS LD
Sbjct: 127 SELIEKASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALD 186
Query: 67 SASAFFVIQ 75
+ +IQ
Sbjct: 187 VLTQAHIIQ 195
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94
+S GE++R++++ ++T P +LLLDEP S LD + ++L + ++ V I
Sbjct: 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
Query: 95 SSHXXXXXXXXXXXSNGETIYFG 117
+ +G+ I G
Sbjct: 188 QTEARIMADRIAVVMDGKLIQVG 210
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S GEK+R++I+ I+ +P +L+LDEP GLD ++++++ G+ V+ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 199
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S GEK+R++I+ I+ +P +L+LDEP GLD ++++++ G+ V+ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
+S G+K+RL+I+ + L LDEP S LD S + QVL+ + +G+ ++ H+
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHE 199
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
DE+ V E + +GL ++ N +S G+K+R++I+ + + P VLL D+ TS
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 64 GLDSASAFFVIQVLKCI 80
LD A+ ++++LK I
Sbjct: 193 ALDPATTRSILELLKDI 209
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63
DE+ V E + +GL ++ N +S G+K+R++I+ + + P VLL D+ TS
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDQATS 192
Query: 64 GLDSASAFFVIQVLKCI 80
LD A+ ++++LK I
Sbjct: 193 ALDPATTRSILELLKDI 209
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 22/155 (14%)
Query: 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSI 91
+ +S G+++R++I ++ +P+V LLD+P S LD+A I++ + GR ++
Sbjct: 132 KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT 191
Query: 92 HQPSSHXXXXXXXXXXXSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRC----- 146
H + + I DA A+ G P P+D F+
Sbjct: 192 HD----------QVEAMTLADKIVVLDAGR----VAQVGKPLELYHYPADRFVAGFIGSP 237
Query: 147 -INSDFDKVAGSSLKSQAPTEIPMSSNSQMYLSTE 180
+N KV +++ Q E+PM + Q++L E
Sbjct: 238 KMNFLPVKVTATAI-DQVQVELPMPNRQQVWLPVE 271
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
EI+ V E +GL T++ N R +S G+++R+++ I+ +P V L+DEP S
Sbjct: 115 EIDQRVREVAELLGL-----TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 65 LDS 67
LD+
Sbjct: 170 LDA 172
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84
T + +S G+++ + I+ I ++ ++LLDEPTS LD A+ V+ +L +A
Sbjct: 119 THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 85 RI-VVCSIHQPSS 96
+ VV + HQP+
Sbjct: 179 NMTVVFTTHQPNQ 191
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
EI+ V E +GL T++ N R +S G+++R+++ I+ +P V L DEP S
Sbjct: 118 EIDKRVREVAEXLGL-----TELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSN 172
Query: 65 LDS 67
LD+
Sbjct: 173 LDA 175
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVII 193
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89
G+S G+++R++I+ ++ P +L+ DE TS LD S +++ + I GR V+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVII 199
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 30 WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89
W L G G+++R++I+ ++ +P VLLLDEP S LD+ V LK + + I
Sbjct: 132 WQLSG---GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 90 SIHQPSSHXXXXXXXXXXXSNGETIYFG 117
+ + GE + G
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVG 216
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83
+T +GN ++ +S GE++R++I+ +L P +++ DE TS LDS + + + ++ + +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 84 GRIVVCSIHQPSS 96
R ++ H+ S+
Sbjct: 205 -RTLIIIAHRLST 216
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 32/46 (69%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
+S GE++R++++ ++ QP +LLLDEP S +D + +++ L+ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
N + +S G+++R++++ I+ +P VLL+DEP S LD+
Sbjct: 137 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 175
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
N + +S G+++R++++ I+ +P VLL+DEP S LD+
Sbjct: 136 NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
M+ +EI VEE + + N R +S G+++R++++ ++ P++LLLDE
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGGQQQRVALARALVKDPSLLLLDE 166
Query: 61 PTSGLDS 67
P S LD+
Sbjct: 167 PFSNLDA 173
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
R S G+K+RLSI+ ++ +P VL+LD+ TS +D + ++ LK
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
+ L +S GE +R++I+ +L + DEP+S LD V +V++ +A +G+ V+
Sbjct: 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
Query: 89 CSIHQ 93
H
Sbjct: 283 VVEHD 287
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
+ ++ +S GE +R++I+ +L + LLDEP++ LD V + ++
Sbjct: 466 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88
+ L +S GE +R++I+ +L + DEP+S LD V +V++ +A +G+ V+
Sbjct: 209 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 268
Query: 89 CSIHQ 93
H
Sbjct: 269 VVEHD 273
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
+ ++ +S GE +R++I+ +L + LLDEP++ LD V + ++
Sbjct: 452 DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 501
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67
+S G+++R++++ ++ QP VLL DEP S LD+
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 27 IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86
+ + +RG+S G+K +L ++ +P +++LDEPT+ LD S + + LK +G +
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGV 951
Query: 87 VVCS 90
++ +
Sbjct: 952 IIIT 955
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79
+ +S G K +L+++ +L +LLLDEPT+ LD+ + +++ L
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 27 IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86
+ + +RG+S G+K +L ++ +P +++LDEPT+ LD S + + LK +G +
Sbjct: 894 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGV 951
Query: 87 VVCS 90
++ +
Sbjct: 952 IIIT 955
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79
+ +S G K +L+++ +L +LLLDEPT+ LD+ + +++ L
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 27 IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86
+ + +RG+S G+K +L ++ +P +++LDEPT+ LD S + + LK +G +
Sbjct: 888 VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK--EFEGGV 945
Query: 87 VVCS 90
++ +
Sbjct: 946 IIIT 949
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
+ +S G K +L+++ +L +LLLDEPT+ LD+ + +++ L
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYL 585
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
+EE + + L+ E +I HL S GE +R++I+ +L T DEP+S LD
Sbjct: 139 LEEVVKALELENVLEREI--QHL---SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 70 AFFVIQVLKCIALDGRIVVCSIHQ 93
+ ++ ++ +G+ V+ H
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHD 217
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80
+S GE +R++I+ +L + LLDEP++ LD V + ++ +
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
+ +S GE +R +I + + + V + DEP+S LD Q+++ + + V+C
Sbjct: 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVE 278
Query: 92 H 92
H
Sbjct: 279 H 279
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK 78
+ ++ +S GE +R++I + + + L+DEP++ LDS +V++
Sbjct: 462 DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 1 MTNDEINDI-VEETIIKMGLQACAETKIGNWHL----RGISSGEKKRLSISIEILTQP-- 53
+T DE +D +E+ I L E +G L +S GE +R+ ++ E+
Sbjct: 692 LTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRG 751
Query: 54 -TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93
TV +LDEPT+GL A + + L + G V+ H+
Sbjct: 752 GTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
+S G+++R++I+ +L VL+LDE TS LD+ S
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS 90
+S G K+ + ++ +L++ +LLLDEP++ LD + + + LK D +++C
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDE 60
M+ +EI VEE + + N R +S +++R++++ ++ P++LLLDE
Sbjct: 112 MSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDE 166
Query: 61 PTSGLDS 67
P S LD+
Sbjct: 167 PFSNLDA 173
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81
G S GEKKR I ++ +PT +LDE SGLD I LK +A
Sbjct: 142 EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-------IDALKVVA 183
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
+S G+++R++I+ +L +L+LDE TS LD+ S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSAS 69
+S G+++R++I+ +L +L+LDE TS LD+ S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPT 62
DE++ V E + M L++ A N +S G+++R++++ + +P VLL DEP
Sbjct: 119 KDEMDARVRELLRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173
Query: 63 SGLDS 67
+ +D+
Sbjct: 174 AAIDT 178
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
+S G+++ ++++ ++ +P VL+LD+ TS LD+ S V Q+L
Sbjct: 155 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 11 EETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA 70
EE ++ L E+ + + +S GE ++L I+ + + + +LD+P+S LD
Sbjct: 367 EEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 71 FFVIQVLKCIALDGRIVVCSI-HQPSSH 97
+ V + +K + + + V I H S H
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIH 449
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
+ D++EE I + + T+ N G S GEKKR I + +P + +LDE SG
Sbjct: 138 DFQDLMEEKIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSG 194
Query: 65 LDSASAFFVIQVLKCIALDG 84
LD I LK +A DG
Sbjct: 195 LD-------IDALKVVA-DG 206
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 33 RGISSGEKKRLSISIEILTQ-------PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85
R +S GE++R+ ++ +L Q P L LDEPTS LD +++L+ +
Sbjct: 140 RVLSGGEQQRVQLA-RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 86 IVVCSI 91
+ VC +
Sbjct: 199 LAVCCV 204
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSG 64
+ D++EE I + + T+ N G S GEKKR I + +P + +LDE SG
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNV---GFSGGEKKRNDILQMAVLEPELCILDESDSG 175
Query: 65 LDSASAFFVIQVLKCIALDG 84
LD I LK +A DG
Sbjct: 176 LD-------IDALKVVA-DG 187
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCIALDGRIVVCSIHQ 93
+S G+++ ++++ ++ +P +L+LD+ TS LD+ + V ++L + R V+ HQ
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89
+S GE++ L+I + ++P +L DEP+ GL V +V++ I +G ++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILL 194
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 15 IKMGLQACAETKIGNWHL----RGISSGEKKRLSISIEIL---TQPTVLLLDEPTSGLDS 67
IK LQ + +G L +S GE +R+ ++ E+ T T+ +LDEPT GL
Sbjct: 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF 841
Query: 68 ASAFFVIQVLKCIALDGRIVVCSIHQ 93
+++VL + G V+ H
Sbjct: 842 EDVRKLVEVLHRLVDRGNTVIVIEHN 867
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 35 ISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92
+S GE +R+ ++ +I + T + +LDEPT GL +I+ LK + G V+ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 93 Q 93
Sbjct: 525 D 525
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 35 ISSGEKKRLSISIEIL---TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
+S GE +R+ ++ E+ T TV +LDEPT+GL ++ V+ + G V+
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 92 HQ 93
H
Sbjct: 924 HN 925
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 35 ISSGEKKRLSIS---IEILTQPT----VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87
+S GE +R+ ++ ++I Q +LLLDEP + LD A + ++L ++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAI 186
Query: 88 VCSIH 92
V S H
Sbjct: 187 VXSSH 191
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
+S G+++ ++++ ++ +P +L+LD TS LD+ + V ++L
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 10 VEETIIKMGLQACA------------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLL 57
+EE + +QACA T+IG + +S G+K+R+S++ + + + L
Sbjct: 92 LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYL 150
Query: 58 LDEPTSGLDS 67
D+P S +D+
Sbjct: 151 FDDPLSAVDA 160
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 35 ISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
+S GE +R+ ++ E+ + T+ +LDEPT+GL ++ VL + +G V+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 603
Query: 92 HQ 93
H
Sbjct: 604 HN 605
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 35 ISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
+S GE +R+ ++ E+ + T+ +LDEPT+GL ++ VL + +G V+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 92 HQ 93
H
Sbjct: 906 HN 907
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 35 ISSGEKKRLSIS---IEILTQPT----VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87
+S GE +R+ ++ ++I Q +LLLD+P + LD A + ++L ++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAI 186
Query: 88 VCSIH 92
V S H
Sbjct: 187 VMSSH 191
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 35 ISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91
+S GE +R+ ++ E+ + T+ +LDEPT+GL ++ VL + +G V+
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIE 905
Query: 92 HQ 93
H
Sbjct: 906 HN 907
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 19 LQACAETKIGNWHLR----GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI 74
L+ K+G LR +S+G+ + S+ + +QP ++ LDEP +D+A +
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 75 QVLKCIALDGRIV 87
+ +K +G +V
Sbjct: 169 RYIKEYGKEGILV 181
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 35 ISSGEKKRLSIS---IEILTQPT----VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87
+S GE +R+ ++ ++I Q +LLLDEP + LD A + ++L + G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAI 186
Query: 88 VCSIH 92
V S H
Sbjct: 187 VXSSH 191
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 29/43 (67%)
Query: 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL 77
++ G+++ ++++ ++ +P +L+LD TS LD+ + V ++L
Sbjct: 157 LAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLL 199
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 35 ISSGEKKRLSIS---IEILTQPT----VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87
+S GE +R+ ++ ++I Q +LLLD+P LD A + ++L ++ G +
Sbjct: 127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAI 186
Query: 88 VCSIH 92
V S H
Sbjct: 187 VMSSH 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,803,905
Number of Sequences: 62578
Number of extensions: 596586
Number of successful extensions: 1576
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 106
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)