Query 009738
Match_columns 527
No_of_seqs 285 out of 3118
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-81 3.2E-86 696.3 54.2 471 2-498 133-615 (617)
2 KOG0061 Transporter, ABC super 100.0 2.6E-82 5.7E-87 696.4 47.1 471 2-499 138-611 (613)
3 TIGR00956 3a01205 Pleiotropic 100.0 3.8E-81 8.2E-86 741.4 51.3 474 4-497 178-695 (1394)
4 PLN03211 ABC transporter G-25; 100.0 9.1E-81 2E-85 690.7 51.0 461 3-496 175-658 (659)
5 PLN03140 ABC transporter G fam 100.0 1.6E-78 3.4E-83 717.0 53.0 466 3-498 988-1468(1470)
6 PLN03140 ABC transporter G fam 100.0 1.2E-78 2.6E-83 718.0 47.1 471 9-497 311-790 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 4.7E-76 1E-80 698.0 51.1 462 3-497 871-1391(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1.2E-75 2.7E-80 654.8 37.6 472 9-498 235-732 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 8.4E-73 1.8E-77 632.1 31.2 465 2-497 898-1384(1391)
10 COG1126 GlnQ ABC-type polar am 99.9 6.6E-27 1.4E-31 218.6 14.3 116 1-122 108-223 (240)
11 COG1135 AbcC ABC-type metal io 99.9 1.8E-26 3.8E-31 226.1 12.9 116 1-122 113-229 (339)
12 COG1125 OpuBA ABC-type proline 99.9 9.7E-26 2.1E-30 214.9 14.0 119 2-124 106-225 (309)
13 COG4555 NatA ABC-type Na+ tran 99.9 1.3E-25 2.8E-30 207.1 12.0 118 1-124 105-222 (245)
14 COG1127 Ttg2A ABC-type transpo 99.9 4.7E-25 1E-29 209.2 13.6 119 1-124 116-235 (263)
15 COG1122 CbiO ABC-type cobalt t 99.9 4.9E-25 1.1E-29 214.8 12.8 117 2-124 111-228 (235)
16 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.1E-24 2.4E-29 211.9 13.3 112 5-123 115-226 (254)
17 COG1120 FepC ABC-type cobalami 99.9 1.4E-24 3.1E-29 212.0 13.3 114 4-123 113-227 (258)
18 COG1131 CcmA ABC-type multidru 99.9 3E-24 6.5E-29 217.2 15.0 118 4-127 111-229 (293)
19 COG0444 DppD ABC-type dipeptid 99.9 7.9E-24 1.7E-28 210.1 13.2 118 3-123 124-242 (316)
20 COG3638 ABC-type phosphate/pho 99.9 6.6E-24 1.4E-28 200.9 11.4 115 4-124 122-237 (258)
21 COG1124 DppF ABC-type dipeptid 99.9 1E-23 2.2E-28 201.0 11.8 115 5-124 116-231 (252)
22 COG1137 YhbG ABC-type (unclass 99.9 2E-23 4.3E-28 192.6 12.4 114 5-124 115-228 (243)
23 PRK13537 nodulation ABC transp 99.9 3.8E-23 8.2E-28 210.8 15.5 115 4-124 113-227 (306)
24 TIGR02314 ABC_MetN D-methionin 99.9 3.8E-23 8.2E-28 213.2 15.4 116 2-123 113-229 (343)
25 COG4175 ProV ABC-type proline/ 99.9 3.3E-23 7.1E-28 203.0 14.0 118 1-124 136-254 (386)
26 COG1123 ATPase components of v 99.9 2.6E-23 5.6E-28 220.4 14.4 118 3-124 126-244 (539)
27 COG0411 LivG ABC-type branched 99.9 3.9E-23 8.5E-28 197.1 12.7 116 3-124 123-239 (250)
28 TIGR01188 drrA daunorubicin re 99.9 8.5E-23 1.8E-27 208.1 15.7 115 4-124 99-213 (302)
29 PRK13643 cbiO cobalt transport 99.9 1.4E-22 3E-27 205.1 16.4 128 3-136 117-248 (288)
30 PRK13536 nodulation factor exp 99.9 1.5E-22 3.2E-27 209.0 15.8 115 4-124 147-261 (340)
31 cd03261 ABC_Org_Solvent_Resist 99.9 1.4E-22 3E-27 199.1 14.7 113 4-122 111-224 (235)
32 TIGR03258 PhnT 2-aminoethylpho 99.9 1.6E-22 3.5E-27 210.2 15.4 116 2-123 110-227 (362)
33 PRK11650 ugpC glycerol-3-phosp 99.9 1.8E-22 3.9E-27 209.6 15.4 116 2-123 107-223 (356)
34 COG1136 SalX ABC-type antimicr 99.9 1.4E-22 3E-27 194.4 13.2 103 5-113 117-220 (226)
35 PRK13637 cbiO cobalt transport 99.9 3.8E-22 8.3E-27 201.8 17.2 115 3-123 116-233 (287)
36 PRK13651 cobalt transporter AT 99.9 3.8E-22 8.1E-27 203.3 17.0 115 3-123 138-253 (305)
37 PRK13634 cbiO cobalt transport 99.9 4.8E-22 1E-26 201.4 17.2 115 3-123 118-234 (290)
38 PRK13647 cbiO cobalt transport 99.9 4.9E-22 1.1E-26 199.7 17.0 113 4-122 113-225 (274)
39 COG1117 PstB ABC-type phosphat 99.9 7.7E-23 1.7E-27 190.6 10.1 116 4-122 120-235 (253)
40 TIGR03265 PhnT2 putative 2-ami 99.9 2.8E-22 6.2E-27 207.9 15.3 116 2-123 107-223 (353)
41 TIGR01288 nodI ATP-binding ABC 99.9 3.3E-22 7.1E-27 203.8 15.6 115 4-124 110-224 (303)
42 COG3840 ThiQ ABC-type thiamine 99.9 2.1E-22 4.5E-27 183.2 12.2 114 4-123 104-218 (231)
43 PRK11432 fbpC ferric transport 99.9 3.7E-22 8E-27 206.7 15.5 116 2-123 109-225 (351)
44 COG1118 CysA ABC-type sulfate/ 99.9 2.5E-22 5.3E-27 196.6 12.9 117 2-124 110-227 (345)
45 PRK10851 sulfate/thiosulfate t 99.9 4.7E-22 1E-26 206.2 15.7 115 3-123 110-225 (353)
46 cd03219 ABC_Mj1267_LivG_branch 99.9 4.6E-22 1E-26 195.4 14.8 113 4-122 118-230 (236)
47 TIGR01186 proV glycine betaine 99.9 4.6E-22 1E-26 206.3 15.5 115 3-123 103-218 (363)
48 cd03265 ABC_DrrA DrrA is the A 99.9 5.3E-22 1.1E-26 193.0 14.6 112 4-121 106-218 (220)
49 PRK13631 cbiO cobalt transport 99.9 9.5E-22 2.1E-26 201.5 17.2 127 3-135 149-279 (320)
50 COG4598 HisP ABC-type histidin 99.9 3.7E-22 8E-27 181.0 12.3 117 1-123 124-240 (256)
51 PRK09473 oppD oligopeptide tra 99.9 6.3E-22 1.4E-26 203.7 15.7 118 3-123 132-250 (330)
52 PRK15079 oligopeptide ABC tran 99.9 6.1E-22 1.3E-26 203.8 15.5 116 2-123 133-250 (331)
53 PRK13641 cbiO cobalt transport 99.9 7.5E-22 1.6E-26 199.7 15.8 115 3-123 118-233 (287)
54 cd03259 ABC_Carb_Solutes_like 99.9 5.4E-22 1.2E-26 191.9 14.2 108 4-117 105-213 (213)
55 PRK13636 cbiO cobalt transport 99.9 9.9E-22 2.1E-26 198.4 16.5 115 3-123 115-230 (283)
56 PRK11153 metN DL-methionine tr 99.9 7E-22 1.5E-26 204.6 15.6 115 3-123 114-229 (343)
57 PRK09536 btuD corrinoid ABC tr 99.9 5.7E-22 1.2E-26 208.1 15.1 112 5-122 115-226 (402)
58 COG1116 TauB ABC-type nitrate/ 99.9 5.1E-22 1.1E-26 190.9 13.4 104 2-111 103-207 (248)
59 PRK13650 cbiO cobalt transport 99.9 1.2E-21 2.7E-26 197.3 16.7 114 3-123 114-228 (279)
60 cd03218 ABC_YhbG The ABC trans 99.9 8.1E-22 1.8E-26 193.2 14.8 112 5-122 109-220 (232)
61 cd03256 ABC_PhnC_transporter A 99.9 8.2E-22 1.8E-26 194.2 14.9 111 6-122 121-232 (241)
62 PRK11000 maltose/maltodextrin 99.9 7.7E-22 1.7E-26 206.0 15.4 115 3-123 107-222 (369)
63 PRK11264 putative amino-acid A 99.9 1.1E-21 2.4E-26 194.5 15.4 112 5-122 120-231 (250)
64 cd03296 ABC_CysA_sulfate_impor 99.9 8.9E-22 1.9E-26 193.9 14.7 112 5-122 112-224 (239)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.9 1.1E-21 2.4E-26 196.7 15.4 113 5-123 136-249 (269)
66 PRK09493 glnQ glutamine ABC tr 99.9 1.1E-21 2.3E-26 193.4 15.1 113 4-122 111-223 (240)
67 PRK13638 cbiO cobalt transport 99.9 1.1E-21 2.4E-26 196.8 15.5 113 4-122 111-223 (271)
68 PRK11308 dppF dipeptide transp 99.9 1.1E-21 2.4E-26 201.7 15.7 115 3-123 127-243 (327)
69 PRK09452 potA putrescine/sperm 99.9 1E-21 2.2E-26 204.9 15.5 115 3-123 118-233 (375)
70 PRK11022 dppD dipeptide transp 99.9 1.1E-21 2.3E-26 201.7 15.5 118 3-123 124-242 (326)
71 cd03293 ABC_NrtD_SsuB_transpor 99.9 1.1E-21 2.4E-26 190.8 14.6 110 5-120 107-219 (220)
72 PRK13646 cbiO cobalt transport 99.9 1.5E-21 3.2E-26 197.5 15.8 115 3-123 118-234 (286)
73 TIGR01187 potA spermidine/putr 99.9 1.3E-21 2.8E-26 201.2 15.7 114 4-123 75-189 (325)
74 COG4161 ArtP ABC-type arginine 99.9 8.8E-22 1.9E-26 175.6 12.3 114 1-120 113-226 (242)
75 TIGR03522 GldA_ABC_ATP gliding 99.9 1.1E-21 2.3E-26 199.8 14.7 114 4-124 108-221 (301)
76 TIGR02315 ABC_phnC phosphonate 99.9 1E-21 2.2E-26 193.8 14.1 112 5-122 121-233 (243)
77 cd03260 ABC_PstB_phosphate_tra 99.9 1.3E-21 2.7E-26 191.2 14.6 111 6-121 116-226 (227)
78 TIGR01184 ntrCD nitrate transp 99.9 1E-21 2.2E-26 192.4 13.9 110 5-120 90-200 (230)
79 COG3839 MalK ABC-type sugar tr 99.9 6.2E-22 1.4E-26 200.6 12.7 117 2-124 106-223 (338)
80 cd03301 ABC_MalK_N The N-termi 99.9 1.3E-21 2.9E-26 189.1 14.3 108 4-117 105-213 (213)
81 PRK13639 cbiO cobalt transport 99.9 2.7E-21 5.9E-26 194.4 17.0 114 4-123 112-225 (275)
82 cd03258 ABC_MetN_methionine_tr 99.9 1.6E-21 3.5E-26 191.2 15.0 112 5-122 116-228 (233)
83 TIGR00960 3a0501s02 Type II (G 99.9 1.1E-21 2.5E-26 190.1 13.7 104 4-113 113-216 (216)
84 PRK13652 cbiO cobalt transport 99.9 1.8E-21 3.9E-26 196.0 15.4 114 4-123 112-226 (277)
85 cd03266 ABC_NatA_sodium_export 99.9 1.4E-21 3E-26 189.7 14.0 108 4-117 111-218 (218)
86 PRK11607 potG putrescine trans 99.9 1.7E-21 3.6E-26 203.6 15.5 116 2-123 122-238 (377)
87 PRK13644 cbiO cobalt transport 99.9 1.9E-21 4.1E-26 195.4 15.3 114 3-123 110-223 (274)
88 PRK15093 antimicrobial peptide 99.9 1.8E-21 3.8E-26 200.6 15.3 116 5-123 131-247 (330)
89 TIGR03415 ABC_choXWV_ATP choli 99.9 1.9E-21 4.2E-26 202.6 15.5 115 3-123 138-253 (382)
90 PRK11831 putative ABC transpor 99.9 2E-21 4.2E-26 194.9 15.0 112 5-122 119-231 (269)
91 COG1123 ATPase components of v 99.9 1E-21 2.2E-26 208.3 13.4 116 3-123 402-518 (539)
92 cd03263 ABC_subfamily_A The AB 99.9 1.7E-21 3.7E-26 189.3 13.9 111 5-122 109-219 (220)
93 TIGR02770 nickel_nikD nickel i 99.9 2.7E-21 5.9E-26 189.3 14.9 112 6-123 99-214 (230)
94 PRK13649 cbiO cobalt transport 99.9 4.6E-21 9.9E-26 193.3 16.9 113 4-122 119-232 (280)
95 COG2884 FtsE Predicted ATPase 99.9 2.3E-21 5E-26 177.7 13.2 111 2-118 110-220 (223)
96 PRK11300 livG leucine/isoleuci 99.9 2.4E-21 5.2E-26 192.6 14.5 110 7-122 131-241 (255)
97 PRK10070 glycine betaine trans 99.9 2.8E-21 6.1E-26 202.8 15.6 114 4-123 139-253 (400)
98 cd03269 ABC_putative_ATPase Th 99.9 2.6E-21 5.6E-26 186.8 14.1 108 4-117 103-210 (210)
99 PRK10895 lipopolysaccharide AB 99.9 2.8E-21 6E-26 190.6 14.6 113 4-122 112-224 (241)
100 TIGR00972 3a0107s01c2 phosphat 99.9 3.8E-21 8.3E-26 190.3 15.5 112 4-122 115-230 (247)
101 PRK10619 histidine/lysine/argi 99.9 4.1E-21 8.9E-26 191.2 15.8 113 4-122 126-239 (257)
102 PRK10771 thiQ thiamine transpo 99.9 3.4E-21 7.3E-26 188.9 14.9 112 6-123 106-218 (232)
103 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3.4E-21 7.5E-26 190.1 15.0 113 4-122 108-223 (242)
104 TIGR02142 modC_ABC molybdenum 99.9 2.8E-21 6.1E-26 201.0 15.1 113 5-123 107-220 (354)
105 TIGR03771 anch_rpt_ABC anchore 99.9 3E-21 6.6E-26 188.2 14.3 110 6-122 90-199 (223)
106 cd03226 ABC_cobalt_CbiO_domain 99.9 2.6E-21 5.7E-26 186.1 13.6 101 8-114 105-205 (205)
107 cd03297 ABC_ModC_molybdenum_tr 99.9 3.1E-21 6.8E-26 186.8 14.2 106 6-117 108-214 (214)
108 TIGR01978 sufC FeS assembly AT 99.9 4E-21 8.7E-26 189.5 15.0 114 5-123 118-233 (243)
109 PRK13648 cbiO cobalt transport 99.9 6.1E-21 1.3E-25 191.3 16.5 113 4-123 117-230 (269)
110 PRK13635 cbiO cobalt transport 99.9 5.8E-21 1.3E-25 192.4 16.5 114 3-123 114-228 (279)
111 PRK13633 cobalt transporter AT 99.9 3.7E-21 7.9E-26 194.0 15.0 114 3-123 118-232 (280)
112 PRK11614 livF leucine/isoleuci 99.9 2.8E-21 6E-26 190.1 13.7 112 6-123 113-225 (237)
113 PRK11231 fecE iron-dicitrate t 99.9 3.5E-21 7.6E-26 191.5 14.5 111 6-122 115-225 (255)
114 cd03268 ABC_BcrA_bacitracin_re 99.9 2.6E-21 5.6E-26 186.5 13.1 105 7-117 104-208 (208)
115 cd03235 ABC_Metallic_Cations A 99.9 3.1E-21 6.6E-26 186.7 13.7 106 5-117 108-213 (213)
116 PRK11124 artP arginine transpo 99.9 4.7E-21 1E-25 189.0 15.2 111 5-121 117-227 (242)
117 TIGR03411 urea_trans_UrtD urea 99.9 4.1E-21 8.9E-26 189.4 14.7 111 5-122 119-229 (242)
118 TIGR02769 nickel_nikE nickel i 99.9 4.4E-21 9.5E-26 191.9 15.0 113 5-123 125-239 (265)
119 COG4172 ABC-type uncharacteriz 99.9 2.4E-21 5.2E-26 195.0 13.0 118 2-124 398-516 (534)
120 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.9E-21 1.1E-25 186.9 14.7 108 4-117 117-224 (224)
121 PRK11144 modC molybdate transp 99.9 3.9E-21 8.4E-26 199.7 14.9 111 7-123 106-217 (352)
122 cd03224 ABC_TM1139_LivF_branch 99.9 3.4E-21 7.3E-26 187.4 13.5 111 6-122 108-219 (222)
123 COG3842 PotA ABC-type spermidi 99.9 1.2E-21 2.6E-26 199.6 10.6 115 3-123 110-225 (352)
124 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 5.8E-21 1.3E-25 187.7 15.2 112 5-123 108-220 (236)
125 PRK13645 cbiO cobalt transport 99.9 5.6E-21 1.2E-25 193.6 15.4 113 4-122 124-238 (289)
126 cd03264 ABC_drug_resistance_li 99.9 4.1E-21 8.9E-26 185.5 13.8 107 4-117 105-211 (211)
127 COG4152 ABC-type uncharacteriz 99.9 2.6E-21 5.6E-26 183.6 11.7 122 1-128 102-223 (300)
128 TIGR03740 galliderm_ABC gallid 99.9 3.8E-21 8.3E-26 187.3 13.4 107 8-120 103-209 (223)
129 cd03298 ABC_ThiQ_thiamine_tran 99.9 4.6E-21 1E-25 185.1 13.8 107 5-117 104-211 (211)
130 PRK09984 phosphonate/organopho 99.9 4.9E-21 1.1E-25 191.2 14.4 111 5-121 128-239 (262)
131 PRK14268 phosphate ABC transpo 99.9 7.5E-21 1.6E-25 189.5 15.4 111 5-122 126-240 (258)
132 TIGR03873 F420-0_ABC_ATP propo 99.9 6.2E-21 1.3E-25 189.9 14.7 111 6-122 114-224 (256)
133 PRK13548 hmuV hemin importer A 99.9 6.6E-21 1.4E-25 189.9 14.8 112 6-123 111-229 (258)
134 cd03225 ABC_cobalt_CbiO_domain 99.9 6E-21 1.3E-25 184.3 13.9 102 5-112 110-211 (211)
135 TIGR03005 ectoine_ehuA ectoine 99.9 8E-21 1.7E-25 188.6 15.1 113 4-122 121-234 (252)
136 PRK10253 iron-enterobactin tra 99.9 7.5E-21 1.6E-25 190.2 15.0 112 6-123 120-232 (265)
137 PRK10575 iron-hydroxamate tran 99.9 6.5E-21 1.4E-25 190.7 14.5 111 6-122 124-235 (265)
138 cd03292 ABC_FtsE_transporter F 99.9 6.1E-21 1.3E-25 184.6 13.6 104 4-113 111-214 (214)
139 PRK13640 cbiO cobalt transport 99.8 9.1E-21 2E-25 191.3 15.3 114 3-123 117-231 (282)
140 cd03234 ABCG_White The White s 99.8 8E-21 1.7E-25 185.5 14.3 104 9-117 122-226 (226)
141 PRK11701 phnK phosphonate C-P 99.8 9.5E-21 2.1E-25 188.7 15.1 112 5-122 126-239 (258)
142 PRK03695 vitamin B12-transport 99.8 9.7E-21 2.1E-25 187.6 15.0 112 5-122 102-220 (248)
143 PRK15112 antimicrobial peptide 99.8 8.5E-21 1.8E-25 190.1 14.8 112 5-122 124-237 (267)
144 TIGR02673 FtsE cell division A 99.8 6.8E-21 1.5E-25 184.3 13.6 102 5-112 113-214 (214)
145 cd03299 ABC_ModC_like Archeal 99.8 1.2E-20 2.5E-25 185.6 15.3 113 4-122 104-217 (235)
146 cd03267 ABC_NatA_like Similar 99.8 9.2E-21 2E-25 186.4 14.3 108 4-117 128-236 (236)
147 PRK14273 phosphate ABC transpo 99.8 1.1E-20 2.5E-25 187.7 15.1 112 5-123 122-237 (254)
148 PRK14245 phosphate ABC transpo 99.8 1.2E-20 2.6E-25 187.1 15.0 115 6-123 119-233 (250)
149 PRK11629 lolD lipoprotein tran 99.8 1.3E-20 2.8E-25 184.9 15.0 109 4-119 120-229 (233)
150 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 7E-21 1.5E-25 184.8 12.9 102 5-113 116-218 (218)
151 TIGR01277 thiQ thiamine ABC tr 99.8 1.1E-20 2.4E-25 182.8 14.3 107 6-118 105-212 (213)
152 PRK09700 D-allose transporter 99.8 9E-21 2E-25 206.8 15.1 112 5-122 121-232 (510)
153 TIGR02323 CP_lyasePhnK phospho 99.8 1.3E-20 2.9E-25 187.1 15.0 111 6-122 124-236 (253)
154 PRK13632 cbiO cobalt transport 99.8 1.4E-20 3E-25 188.9 14.8 113 4-123 117-230 (271)
155 CHL00131 ycf16 sulfate ABC tra 99.8 2.1E-20 4.6E-25 185.5 15.9 111 7-122 127-239 (252)
156 cd03262 ABC_HisP_GlnQ_permease 99.8 1.2E-20 2.7E-25 182.3 13.7 103 5-113 111-213 (213)
157 PRK10908 cell division protein 99.8 1.6E-20 3.4E-25 182.9 14.4 105 4-114 112-216 (222)
158 PRK11247 ssuB aliphatic sulfon 99.8 1.3E-20 2.9E-25 187.4 14.1 108 7-120 111-219 (257)
159 PRK14247 phosphate ABC transpo 99.8 1.8E-20 3.8E-25 185.9 14.9 117 4-123 117-233 (250)
160 PRK13545 tagH teichoic acids e 99.8 2.1E-20 4.5E-25 199.1 16.3 115 4-124 118-232 (549)
161 PRK11248 tauB taurine transpor 99.8 1.9E-20 4.1E-25 186.3 15.0 111 4-120 103-216 (255)
162 cd03300 ABC_PotA_N PotA is an 99.8 2.1E-20 4.6E-25 183.3 15.2 113 4-122 105-218 (232)
163 PRK15056 manganese/iron transp 99.8 1.6E-20 3.5E-25 188.5 14.7 110 6-122 119-228 (272)
164 PRK14242 phosphate transporter 99.8 1.8E-20 3.9E-25 186.2 14.8 115 5-122 121-235 (253)
165 PF01061 ABC2_membrane: ABC-2 99.8 1.9E-22 4.2E-27 192.7 0.5 208 225-437 1-210 (210)
166 PRK13642 cbiO cobalt transport 99.8 2.1E-20 4.5E-25 188.2 15.3 113 4-123 115-228 (277)
167 PRK10418 nikD nickel transport 99.8 2.1E-20 4.6E-25 185.8 15.0 110 8-123 116-229 (254)
168 PRK13549 xylose transporter AT 99.8 1.4E-20 3E-25 205.1 14.8 112 5-122 380-492 (506)
169 PRK14250 phosphate ABC transpo 99.8 2E-20 4.3E-25 184.6 14.5 110 7-122 108-219 (241)
170 PRK15134 microcin C ABC transp 99.8 1.6E-20 3.4E-25 205.8 15.2 115 3-123 127-245 (529)
171 PRK10744 pstB phosphate transp 99.8 2.4E-20 5.2E-25 186.1 15.2 113 4-123 127-243 (260)
172 PRK13549 xylose transporter AT 99.8 1.5E-20 3.2E-25 204.9 14.9 112 5-122 119-230 (506)
173 PRK10762 D-ribose transporter 99.8 1.6E-20 3.4E-25 204.5 15.0 112 5-122 117-228 (501)
174 PRK09580 sufC cysteine desulfu 99.8 3.1E-20 6.7E-25 183.8 15.7 112 6-122 120-233 (248)
175 TIGR03269 met_CoM_red_A2 methy 99.8 1.8E-20 3.9E-25 205.0 15.4 116 4-125 143-259 (520)
176 cd03257 ABC_NikE_OppD_transpor 99.8 2E-20 4.3E-25 182.7 14.0 101 11-117 126-228 (228)
177 TIGR02211 LolD_lipo_ex lipopro 99.8 2E-20 4.2E-25 182.0 13.9 103 5-114 117-220 (221)
178 PRK10419 nikE nickel transport 99.8 2.2E-20 4.8E-25 187.1 14.5 113 5-123 126-240 (268)
179 PRK14267 phosphate ABC transpo 99.8 2.8E-20 6E-25 184.8 15.1 116 5-123 121-236 (253)
180 TIGR00968 3a0106s01 sulfate AB 99.8 2.8E-20 6.2E-25 183.0 15.0 113 5-123 106-219 (237)
181 PRK10938 putative molybdenum t 99.8 1.6E-20 3.5E-25 203.8 14.5 110 7-122 113-222 (490)
182 PRK14244 phosphate ABC transpo 99.8 2.8E-20 6.1E-25 184.6 14.9 115 5-122 121-235 (251)
183 PRK15439 autoinducer 2 ABC tra 99.8 2.1E-20 4.6E-25 203.8 15.0 112 5-122 116-227 (510)
184 PRK14274 phosphate ABC transpo 99.8 3.2E-20 7E-25 185.0 15.0 117 4-123 126-242 (259)
185 PRK10261 glutathione transport 99.8 2.2E-20 4.8E-25 208.0 15.3 114 4-123 437-552 (623)
186 PRK13547 hmuV hemin importer A 99.8 2.9E-20 6.4E-25 186.5 14.7 111 6-122 122-242 (272)
187 PRK13546 teichoic acids export 99.8 5.3E-20 1.1E-24 183.8 16.4 115 4-124 118-232 (264)
188 PRK11288 araG L-arabinose tran 99.8 2.3E-20 5.1E-25 203.1 14.9 110 7-122 373-483 (501)
189 PRK15134 microcin C ABC transp 99.8 2.5E-20 5.4E-25 204.2 15.0 114 4-123 399-514 (529)
190 COG4608 AppF ABC-type oligopep 99.8 1.7E-20 3.7E-25 182.6 12.2 116 3-123 82-198 (268)
191 PRK14235 phosphate transporter 99.8 4.2E-20 9.1E-25 185.0 15.2 115 5-122 135-249 (267)
192 PRK14269 phosphate ABC transpo 99.8 4.1E-20 8.8E-25 182.9 14.9 115 5-122 114-228 (246)
193 PRK10584 putative ABC transpor 99.8 3.6E-20 7.8E-25 181.1 14.3 105 4-115 121-226 (228)
194 PRK14270 phosphate ABC transpo 99.8 5E-20 1.1E-24 182.8 15.2 112 5-123 119-234 (251)
195 PRK10762 D-ribose transporter 99.8 3.2E-20 6.8E-25 202.1 14.9 112 5-122 370-482 (501)
196 PRK14258 phosphate ABC transpo 99.8 5.1E-20 1.1E-24 183.8 15.2 117 5-123 122-244 (261)
197 PRK10982 galactose/methyl gala 99.8 3.6E-20 7.8E-25 201.2 15.3 112 5-122 110-221 (491)
198 PRK15439 autoinducer 2 ABC tra 99.8 2.8E-20 6.1E-25 202.8 14.4 111 6-122 379-490 (510)
199 TIGR03410 urea_trans_UrtE urea 99.8 3.2E-20 7E-25 181.6 13.3 109 8-122 109-219 (230)
200 PRK14239 phosphate transporter 99.8 5.4E-20 1.2E-24 182.6 15.0 115 6-123 121-235 (252)
201 PRK10261 glutathione transport 99.8 2.6E-20 5.6E-25 207.4 14.2 114 3-122 139-256 (623)
202 PRK14256 phosphate ABC transpo 99.8 5.8E-20 1.3E-24 182.4 15.2 116 4-122 119-234 (252)
203 COG4172 ABC-type uncharacteriz 99.8 2.5E-20 5.4E-25 187.8 12.3 120 1-123 126-246 (534)
204 PRK14241 phosphate transporter 99.8 5.6E-20 1.2E-24 183.2 14.8 112 4-122 119-240 (258)
205 TIGR01257 rim_protein retinal- 99.8 3.8E-20 8.3E-25 222.7 15.8 119 3-127 2044-2162(2272)
206 PRK14248 phosphate ABC transpo 99.8 6.8E-20 1.5E-24 183.6 15.0 109 7-122 138-250 (268)
207 PRK09700 D-allose transporter 99.8 4.9E-20 1.1E-24 201.1 15.1 108 7-120 386-494 (510)
208 PRK14240 phosphate transporter 99.8 7.7E-20 1.7E-24 181.3 15.2 111 5-122 118-232 (250)
209 cd03214 ABC_Iron-Siderophores_ 99.8 4.5E-20 9.8E-25 173.9 12.8 100 12-117 80-180 (180)
210 TIGR03269 met_CoM_red_A2 methy 99.8 5.5E-20 1.2E-24 201.1 15.4 112 6-123 399-516 (520)
211 PRK14253 phosphate ABC transpo 99.8 8.4E-20 1.8E-24 180.9 15.1 114 6-122 118-231 (249)
212 PRK14262 phosphate ABC transpo 99.8 8.3E-20 1.8E-24 181.1 14.8 116 5-123 118-233 (250)
213 TIGR02633 xylG D-xylose ABC tr 99.8 6.1E-20 1.3E-24 199.9 15.0 112 5-122 116-228 (500)
214 COG4148 ModC ABC-type molybdat 99.8 2.4E-20 5.2E-25 180.1 10.0 112 7-124 106-218 (352)
215 PRK14275 phosphate ABC transpo 99.8 1E-19 2.2E-24 184.0 14.9 110 6-122 155-268 (286)
216 PRK09544 znuC high-affinity zi 99.8 7.5E-20 1.6E-24 181.5 13.7 108 8-122 99-207 (251)
217 PRK14237 phosphate transporter 99.8 1.2E-19 2.5E-24 181.8 15.1 115 5-122 135-249 (267)
218 PRK14272 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 180.1 15.0 111 6-123 121-235 (252)
219 PRK14249 phosphate ABC transpo 99.8 1.2E-19 2.6E-24 180.1 15.0 114 6-122 120-233 (251)
220 PRK14257 phosphate ABC transpo 99.8 1.1E-19 2.3E-24 187.0 15.0 113 8-123 200-312 (329)
221 PRK14251 phosphate ABC transpo 99.8 1.3E-19 2.7E-24 179.9 14.8 110 6-122 120-233 (251)
222 PRK14236 phosphate transporter 99.8 1.3E-19 2.8E-24 182.0 15.0 114 6-122 141-254 (272)
223 PRK14260 phosphate ABC transpo 99.8 1.3E-19 2.8E-24 180.7 14.8 115 5-122 122-241 (259)
224 cd03252 ABCC_Hemolysin The ABC 99.8 9.9E-20 2.2E-24 179.0 13.3 90 31-123 135-224 (237)
225 TIGR02633 xylG D-xylose ABC tr 99.8 1.2E-19 2.5E-24 197.6 15.2 109 6-120 379-488 (500)
226 cd03245 ABCC_bacteriocin_expor 99.8 8.5E-20 1.8E-24 177.4 12.5 107 8-117 108-220 (220)
227 PRK14271 phosphate ABC transpo 99.8 1.9E-19 4.1E-24 181.1 15.4 117 4-123 134-250 (276)
228 PRK14259 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 181.3 14.5 114 7-123 128-252 (269)
229 PRK14261 phosphate ABC transpo 99.8 1.7E-19 3.7E-24 179.2 14.6 115 5-122 121-235 (253)
230 PRK14255 phosphate ABC transpo 99.8 2E-19 4.4E-24 178.5 15.1 114 7-123 122-235 (252)
231 PRK11288 araG L-arabinose tran 99.8 1.5E-19 3.2E-24 196.8 15.3 110 4-119 115-224 (501)
232 PRK14263 phosphate ABC transpo 99.8 2E-19 4.2E-24 179.6 14.9 115 6-123 122-244 (261)
233 PRK14238 phosphate transporter 99.8 1.9E-19 4.1E-24 180.7 14.5 109 7-122 141-253 (271)
234 COG4604 CeuD ABC-type enteroch 99.8 3.9E-20 8.5E-25 170.4 8.7 116 3-124 109-225 (252)
235 PRK14266 phosphate ABC transpo 99.8 2.3E-19 5E-24 177.8 14.9 115 5-122 118-232 (250)
236 COG4559 ABC-type hemin transpo 99.8 1.3E-19 2.9E-24 168.8 12.0 113 5-123 111-229 (259)
237 PRK14246 phosphate ABC transpo 99.8 2.8E-19 6.1E-24 178.0 15.3 113 4-123 124-240 (257)
238 PRK14265 phosphate ABC transpo 99.8 2.6E-19 5.6E-24 180.0 14.8 114 7-123 135-257 (274)
239 PRK10982 galactose/methyl gala 99.8 1.8E-19 3.8E-24 195.8 14.4 110 5-120 366-476 (491)
240 PRK14243 phosphate transporter 99.8 2.8E-19 6E-24 178.8 14.6 114 7-123 125-247 (264)
241 PRK14254 phosphate ABC transpo 99.8 2.6E-19 5.6E-24 180.9 14.5 110 6-122 153-267 (285)
242 cd03270 ABC_UvrA_I The excisio 99.8 2.8E-19 6E-24 174.7 14.0 100 11-117 118-226 (226)
243 TIGR02982 heterocyst_DevA ABC 99.8 2.5E-19 5.3E-24 174.3 13.5 103 4-113 116-219 (220)
244 COG4586 ABC-type uncharacteriz 99.8 2E-19 4.4E-24 173.4 12.3 120 1-126 128-248 (325)
245 TIGR01257 rim_protein retinal- 99.8 2.4E-19 5.2E-24 215.9 15.7 116 4-126 1036-1151(2272)
246 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 2.9E-19 6.3E-24 175.8 13.5 91 31-124 136-226 (238)
247 PRK14264 phosphate ABC transpo 99.8 4.2E-19 9.2E-24 181.1 14.7 114 6-122 173-287 (305)
248 cd03254 ABCC_Glucan_exporter_l 99.8 3.1E-19 6.8E-24 174.5 13.2 111 9-122 108-224 (229)
249 cd03217 ABC_FeS_Assembly ABC-t 99.8 3.5E-19 7.5E-24 170.8 13.2 92 33-126 103-195 (200)
250 cd03251 ABCC_MsbA MsbA is an e 99.8 3.1E-19 6.8E-24 175.1 13.2 105 11-123 118-224 (234)
251 COG1119 ModF ABC-type molybden 99.8 2.8E-19 6E-24 170.9 11.9 109 4-118 146-256 (257)
252 TIGR03608 L_ocin_972_ABC putat 99.8 3.9E-19 8.4E-24 171.0 12.8 98 4-108 109-206 (206)
253 cd03237 ABC_RNaseL_inhibitor_d 99.8 5.8E-19 1.3E-23 174.5 14.3 100 9-114 95-195 (246)
254 PRK14252 phosphate ABC transpo 99.8 7.2E-19 1.6E-23 175.9 15.0 113 7-122 135-247 (265)
255 cd03213 ABCG_EPDR ABCG transpo 99.8 3.8E-19 8.3E-24 169.7 12.3 84 34-117 111-194 (194)
256 cd03232 ABC_PDR_domain2 The pl 99.8 3.6E-19 7.8E-24 169.6 11.7 84 34-117 108-192 (192)
257 cd03289 ABCC_CFTR2 The CFTR su 99.8 4.5E-19 9.8E-24 177.9 12.8 114 8-124 106-225 (275)
258 COG4987 CydC ABC-type transpor 99.8 3.9E-19 8.4E-24 185.5 12.2 114 7-124 441-561 (573)
259 PRK11174 cysteine/glutathione 99.8 5.1E-19 1.1E-23 196.3 14.0 113 7-123 452-571 (588)
260 cd03233 ABC_PDR_domain1 The pl 99.8 5.4E-19 1.2E-23 169.7 12.1 89 29-117 113-202 (202)
261 COG4181 Predicted ABC-type tra 99.8 5.3E-19 1.2E-23 159.5 10.3 105 4-115 121-226 (228)
262 cd03271 ABC_UvrA_II The excisi 99.8 1.2E-18 2.6E-23 172.8 13.9 105 8-119 147-261 (261)
263 PRK11176 lipid transporter ATP 99.8 8.6E-19 1.9E-23 194.3 14.3 113 7-123 447-566 (582)
264 cd03236 ABC_RNaseL_inhibitor_d 99.8 1E-18 2.2E-23 173.7 13.3 106 5-117 115-220 (255)
265 COG4525 TauB ABC-type taurine 99.8 1.6E-18 3.4E-23 159.6 13.3 119 1-125 104-225 (259)
266 PRK15177 Vi polysaccharide exp 99.8 1.4E-18 2.9E-23 168.3 13.7 109 12-127 87-195 (213)
267 cd03216 ABC_Carb_Monos_I This 99.8 1E-18 2.2E-23 162.1 12.2 81 34-115 82-162 (163)
268 cd03253 ABCC_ATM1_transporter 99.8 1.1E-18 2.5E-23 171.3 12.9 90 31-123 134-223 (236)
269 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 1.2E-18 2.6E-23 196.7 14.3 111 7-123 555-672 (686)
270 cd03238 ABC_UvrA The excision 99.8 1.9E-18 4.1E-23 161.8 13.2 100 11-117 68-170 (176)
271 COG0410 LivF ABC-type branched 99.8 1.3E-18 2.9E-23 165.0 12.1 108 10-123 116-225 (237)
272 cd03288 ABCC_SUR2 The SUR doma 99.8 1.9E-18 4.1E-23 172.1 13.7 90 31-123 153-242 (257)
273 PRK10938 putative molybdenum t 99.8 1.1E-18 2.4E-23 189.5 12.9 106 6-117 377-485 (490)
274 PRK10790 putative multidrug tr 99.8 1.7E-18 3.7E-23 192.3 14.5 113 7-123 443-562 (592)
275 COG0396 sufC Cysteine desulfur 99.8 3.2E-18 7E-23 161.8 13.9 122 5-133 118-242 (251)
276 TIGR01842 type_I_sec_PrtD type 99.8 1.9E-18 4E-23 190.1 14.3 98 23-123 444-541 (544)
277 cd03231 ABC_CcmA_heme_exporter 99.8 1.6E-18 3.4E-23 166.3 12.0 96 7-108 103-198 (201)
278 PRK11160 cysteine/glutathione 99.8 2E-18 4.3E-23 190.9 14.4 114 6-123 442-561 (574)
279 KOG0055 Multidrug/pheromone ex 99.8 1.3E-18 2.8E-23 197.4 12.9 103 18-124 474-576 (1228)
280 COG1132 MdlB ABC-type multidru 99.8 1.8E-18 4E-23 191.1 13.8 100 21-124 453-552 (567)
281 PRK13538 cytochrome c biogenes 99.8 1.6E-18 3.4E-23 166.7 11.6 97 6-108 106-202 (204)
282 COG4988 CydD ABC-type transpor 99.8 1.7E-18 3.8E-23 183.2 12.8 113 7-123 424-542 (559)
283 cd03244 ABCC_MRP_domain2 Domai 99.8 2.5E-18 5.4E-23 167.2 12.7 108 8-118 107-220 (221)
284 TIGR02324 CP_lyasePhnL phospho 99.8 2.9E-18 6.3E-23 167.2 13.2 99 5-109 124-223 (224)
285 PRK10247 putative ABC transpor 99.8 1.9E-18 4E-23 168.8 11.8 105 7-118 114-221 (225)
286 PRK13543 cytochrome c biogenes 99.8 2.7E-18 5.9E-23 166.3 12.5 98 7-110 115-212 (214)
287 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 2.7E-18 5.9E-23 194.6 14.3 112 7-124 582-700 (710)
288 cd03215 ABC_Carb_Monos_II This 99.8 1.7E-18 3.6E-23 163.5 10.5 78 35-113 105-182 (182)
289 TIGR01166 cbiO cobalt transpor 99.8 2.3E-18 5E-23 163.6 11.4 87 4-95 102-188 (190)
290 TIGR02203 MsbA_lipidA lipid A 99.8 3.1E-18 6.7E-23 189.5 14.0 113 7-123 436-555 (571)
291 cd03230 ABC_DR_subfamily_A Thi 99.8 2.3E-18 4.9E-23 161.3 11.0 78 35-113 96-173 (173)
292 TIGR03375 type_I_sec_LssB type 99.8 3.2E-18 6.9E-23 193.5 14.4 114 7-124 568-688 (694)
293 cd03248 ABCC_TAP TAP, the Tran 99.8 2.7E-18 5.9E-23 167.6 11.7 96 10-113 129-226 (226)
294 COG1129 MglA ABC-type sugar tr 99.8 5.2E-18 1.1E-22 179.1 14.4 112 2-119 118-229 (500)
295 cd03246 ABCC_Protease_Secretio 99.8 2.8E-18 6E-23 160.7 10.9 77 35-113 97-173 (173)
296 PRK15064 ABC transporter ATP-b 99.8 4.3E-18 9.4E-23 186.6 14.0 108 7-123 132-241 (530)
297 PRK13657 cyclic beta-1,2-gluca 99.8 4E-18 8.8E-23 189.2 13.9 113 7-123 438-557 (588)
298 PRK10535 macrolide transporter 99.8 6E-18 1.3E-22 189.2 15.1 113 4-123 119-231 (648)
299 TIGR01193 bacteriocin_ABC ABC- 99.8 4.6E-18 9.9E-23 192.7 14.3 113 7-124 578-697 (708)
300 TIGR01846 type_I_sec_HlyB type 99.8 5.5E-18 1.2E-22 191.5 14.7 114 7-124 560-680 (694)
301 COG2274 SunT ABC-type bacterio 99.8 3.9E-18 8.4E-23 189.7 12.9 101 20-124 596-696 (709)
302 TIGR01192 chvA glucan exporter 99.8 6.4E-18 1.4E-22 187.2 14.6 112 9-124 440-558 (585)
303 KOG0059 Lipid exporter ABCA1 a 99.8 3.3E-18 7.3E-23 196.7 12.6 120 2-127 671-790 (885)
304 PRK13409 putative ATPase RIL; 99.8 4.9E-18 1.1E-22 187.2 13.3 104 9-119 433-537 (590)
305 PRK15064 ABC transporter ATP-b 99.8 4.9E-18 1.1E-22 186.2 13.3 107 7-122 415-523 (530)
306 cd03247 ABCC_cytochrome_bd The 99.8 5E-18 1.1E-22 159.7 11.4 83 32-117 96-178 (178)
307 PRK10789 putative multidrug tr 99.8 7.1E-18 1.5E-22 186.4 14.4 112 8-123 419-537 (569)
308 cd03369 ABCC_NFT1 Domain 2 of 99.7 6.1E-18 1.3E-22 162.9 11.8 86 31-119 122-207 (207)
309 cd03229 ABC_Class3 This class 99.7 5.7E-18 1.2E-22 159.3 11.1 77 35-112 101-178 (178)
310 TIGR00958 3a01208 Conjugate Tr 99.7 7.1E-18 1.5E-22 190.9 13.8 112 7-124 584-702 (711)
311 KOG0057 Mitochondrial Fe/S clu 99.7 7.8E-18 1.7E-22 176.0 12.5 114 7-124 454-574 (591)
312 cd03222 ABC_RNaseL_inhibitor T 99.7 1E-17 2.2E-22 157.1 11.5 87 35-122 72-161 (177)
313 PRK11819 putative ABC transpor 99.7 1.1E-17 2.3E-22 184.4 13.4 106 7-122 142-248 (556)
314 TIGR02204 MsbA_rel ABC transpo 99.7 1.4E-17 3.1E-22 184.3 14.4 113 7-123 443-562 (576)
315 PRK13539 cytochrome c biogenes 99.7 1.2E-17 2.5E-22 161.1 11.5 95 8-110 106-200 (207)
316 PRK10636 putative ABC transpor 99.7 1.3E-17 2.7E-22 186.2 13.5 109 6-123 406-516 (638)
317 PRK10636 putative ABC transpor 99.7 1.2E-17 2.7E-22 186.3 13.4 107 6-121 125-233 (638)
318 KOG0058 Peptide exporter, ABC 99.7 1E-17 2.2E-22 180.8 11.9 103 18-124 589-691 (716)
319 TIGR01189 ccmA heme ABC export 99.7 1.1E-17 2.5E-22 159.9 11.0 92 8-107 106-197 (198)
320 COG4674 Uncharacterized ABC-ty 99.7 8.8E-18 1.9E-22 154.7 9.5 113 4-123 122-234 (249)
321 cd03291 ABCC_CFTR1 The CFTR su 99.7 3.2E-17 6.9E-22 165.1 14.5 89 32-123 157-246 (282)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.9E-17 4.2E-22 182.3 13.6 106 8-123 141-247 (552)
323 cd03250 ABCC_MRP_domain1 Domai 99.7 2.3E-17 5E-22 158.5 12.0 80 31-112 124-204 (204)
324 PRK13409 putative ATPase RIL; 99.7 2.1E-17 4.5E-22 182.3 13.2 98 7-111 190-287 (590)
325 KOG0055 Multidrug/pheromone ex 99.7 1.7E-17 3.7E-22 188.4 12.6 104 17-124 1110-1213(1228)
326 PRK11147 ABC transporter ATPas 99.7 2.7E-17 5.9E-22 183.8 13.6 105 6-121 135-240 (635)
327 cd03290 ABCC_SUR1_N The SUR do 99.7 3.1E-17 6.8E-22 159.2 12.3 101 9-112 109-218 (218)
328 PRK00349 uvrA excinuclease ABC 99.7 2.8E-17 6.1E-22 187.6 13.5 111 5-123 465-584 (943)
329 TIGR01194 cyc_pep_trnsptr cycl 99.7 4.4E-17 9.5E-22 179.5 14.5 109 6-116 441-551 (555)
330 COG4107 PhnK ABC-type phosphon 99.7 3.9E-17 8.5E-22 147.7 11.4 115 5-124 126-241 (258)
331 cd03228 ABCC_MRP_Like The MRP 99.7 2.6E-17 5.7E-22 153.8 10.3 75 35-112 97-171 (171)
332 PLN03073 ABC transporter F fam 99.7 5.5E-17 1.2E-21 182.2 14.3 108 7-123 604-713 (718)
333 PLN03073 ABC transporter F fam 99.7 5.5E-17 1.2E-21 182.2 14.2 107 6-121 320-428 (718)
334 PRK10522 multidrug transporter 99.7 6.9E-17 1.5E-21 177.8 14.5 106 7-116 422-530 (547)
335 COG1134 TagH ABC-type polysacc 99.7 9.7E-17 2.1E-21 153.6 13.5 122 1-128 119-240 (249)
336 PTZ00265 multidrug resistance 99.7 5E-17 1.1E-21 195.0 14.2 113 8-123 1326-1451(1466)
337 TIGR00630 uvra excinuclease AB 99.7 7.1E-17 1.5E-21 184.0 13.9 104 13-123 470-582 (924)
338 PRK13540 cytochrome c biogenes 99.7 5.7E-17 1.2E-21 155.4 10.5 92 8-106 106-197 (200)
339 PTZ00265 multidrug resistance 99.7 8.2E-17 1.8E-21 193.1 14.2 102 7-111 546-655 (1466)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8E-17 1.7E-21 146.3 10.6 76 33-112 69-144 (144)
341 COG4618 ArpD ABC-type protease 99.7 5.4E-17 1.2E-21 168.3 10.1 107 17-126 456-562 (580)
342 COG3845 ABC-type uncharacteriz 99.7 2E-16 4.3E-21 164.2 14.0 111 2-118 113-223 (501)
343 COG1129 MglA ABC-type sugar tr 99.7 1.5E-16 3.2E-21 168.2 13.2 113 2-120 373-486 (500)
344 cd03223 ABCD_peroxisomal_ALDP 99.7 1E-16 2.2E-21 149.1 10.7 75 32-111 89-163 (166)
345 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 1.5E-16 3.2E-21 175.3 13.7 103 9-120 422-527 (552)
346 PLN03232 ABC transporter C fam 99.7 1.8E-16 4E-21 191.4 14.7 114 7-124 1338-1458(1495)
347 PRK11819 putative ABC transpor 99.7 2.1E-16 4.6E-21 174.1 13.7 103 9-120 424-529 (556)
348 PLN03130 ABC transporter C fam 99.7 2.4E-16 5.2E-21 190.8 14.5 114 7-124 1341-1461(1622)
349 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2.8E-16 6E-21 144.7 11.3 77 35-112 81-157 (157)
350 PRK13541 cytochrome c biogenes 99.7 1.9E-16 4.1E-21 151.1 10.4 84 7-95 101-184 (195)
351 PLN03232 ABC transporter C fam 99.7 2.7E-16 5.9E-21 189.9 13.8 113 7-123 707-827 (1495)
352 TIGR00957 MRP_assoc_pro multi 99.7 4E-16 8.6E-21 188.8 14.7 114 7-124 1388-1508(1522)
353 PRK00635 excinuclease ABC subu 99.7 7.7E-16 1.7E-20 183.1 15.3 112 4-123 784-905 (1809)
354 PRK00349 uvrA excinuclease ABC 99.7 7.6E-16 1.6E-20 176.0 14.3 108 9-123 809-926 (943)
355 COG5265 ATM1 ABC-type transpor 99.7 2.3E-16 5.1E-21 160.2 8.7 102 19-124 385-486 (497)
356 PTZ00243 ABC transporter; Prov 99.6 7.9E-16 1.7E-20 186.0 14.8 113 7-123 1412-1532(1560)
357 PRK11147 ABC transporter ATPas 99.6 6E-16 1.3E-20 173.0 12.7 106 7-121 417-525 (635)
358 PLN03130 ABC transporter C fam 99.6 7.1E-16 1.5E-20 186.7 14.2 113 7-123 707-827 (1622)
359 TIGR01271 CFTR_protein cystic 99.6 8E-16 1.7E-20 185.7 14.0 113 7-123 1320-1439(1490)
360 PRK00635 excinuclease ABC subu 99.6 1E-15 2.2E-20 182.1 14.5 102 14-122 460-570 (1809)
361 TIGR02857 CydD thiol reductant 99.6 5.7E-16 1.2E-20 169.9 11.4 98 7-108 425-529 (529)
362 cd03279 ABC_sbcCD SbcCD and ot 99.6 1.3E-15 2.9E-20 147.4 12.5 93 14-112 108-210 (213)
363 COG4167 SapF ABC-type antimicr 99.6 2.3E-15 5E-20 137.4 11.9 117 2-123 121-238 (267)
364 TIGR00630 uvra excinuclease AB 99.6 2E-15 4.3E-20 172.3 14.1 107 9-122 807-923 (924)
365 COG0488 Uup ATPase components 99.6 1.2E-15 2.5E-20 164.9 11.5 105 6-120 131-236 (530)
366 KOG0056 Heavy metal exporter H 99.6 7.8E-16 1.7E-20 158.3 9.5 105 16-124 657-761 (790)
367 TIGR00954 3a01203 Peroxysomal 99.6 1.7E-15 3.7E-20 169.7 12.6 98 7-109 551-652 (659)
368 cd03278 ABC_SMC_barmotin Barmo 99.6 3.6E-15 7.7E-20 142.6 10.7 93 7-110 94-190 (197)
369 COG4619 ABC-type uncharacteriz 99.6 4.2E-15 9.1E-20 134.0 9.9 101 8-113 111-212 (223)
370 TIGR01271 CFTR_protein cystic 99.6 5.4E-15 1.2E-19 178.5 13.9 96 24-123 539-635 (1490)
371 cd03273 ABC_SMC2_euk Eukaryoti 99.6 5.7E-15 1.2E-19 146.6 11.5 101 6-109 123-242 (251)
372 TIGR02868 CydC thiol reductant 99.6 3.4E-15 7.3E-20 163.8 10.5 86 7-94 437-529 (529)
373 PTZ00243 ABC transporter; Prov 99.6 8.3E-15 1.8E-19 177.2 14.5 96 25-123 774-869 (1560)
374 TIGR00957 MRP_assoc_pro multi 99.6 7.3E-15 1.6E-19 177.9 14.0 97 24-123 751-849 (1522)
375 cd03275 ABC_SMC1_euk Eukaryoti 99.6 8.4E-15 1.8E-19 145.1 12.0 102 7-110 111-233 (247)
376 COG1101 PhnK ABC-type uncharac 99.6 5.9E-15 1.3E-19 138.2 9.6 101 11-117 128-231 (263)
377 cd03276 ABC_SMC6_euk Eukaryoti 99.6 6.4E-15 1.4E-19 141.0 9.9 96 7-112 90-192 (198)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.6 1.4E-14 3.1E-19 142.8 11.3 77 30-109 154-234 (243)
379 COG4778 PhnL ABC-type phosphon 99.5 1.6E-14 3.4E-19 130.5 8.8 104 2-110 124-227 (235)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.2E-14 2.6E-19 140.5 8.4 92 11-110 109-204 (212)
381 cd03240 ABC_Rad50 The catalyti 99.5 4.4E-14 9.5E-19 135.9 9.6 79 31-111 112-199 (204)
382 KOG0054 Multidrug resistance-a 99.5 9.6E-12 2.1E-16 145.1 29.8 114 7-123 610-730 (1381)
383 COG3845 ABC-type uncharacteriz 99.5 1E-13 2.2E-18 144.2 10.8 115 3-122 376-490 (501)
384 KOG0927 Predicted transporter 99.5 1E-13 2.2E-18 145.0 10.2 110 3-121 194-306 (614)
385 COG4170 SapD ABC-type antimicr 99.5 5.4E-14 1.2E-18 131.0 5.9 116 6-124 132-248 (330)
386 cd03239 ABC_SMC_head The struc 99.4 4.9E-13 1.1E-17 125.7 10.6 76 33-110 93-172 (178)
387 cd03277 ABC_SMC5_euk Eukaryoti 99.4 4.3E-13 9.4E-18 129.8 9.5 82 30-112 122-211 (213)
388 COG4138 BtuD ABC-type cobalami 99.4 7.4E-14 1.6E-18 126.7 3.1 116 2-123 98-220 (248)
389 COG0488 Uup ATPase components 99.4 8.8E-13 1.9E-17 142.7 11.6 106 7-122 416-523 (530)
390 COG1245 Predicted ATPase, RNas 99.4 1E-12 2.2E-17 135.0 9.8 96 9-110 193-288 (591)
391 COG4133 CcmA ABC-type transpor 99.4 1.2E-12 2.6E-17 120.6 9.2 84 8-96 109-192 (209)
392 cd03280 ABC_MutS2 MutS2 homolo 99.3 7.2E-13 1.6E-17 127.0 5.1 82 33-117 90-172 (200)
393 KOG0054 Multidrug resistance-a 99.3 5E-12 1.1E-16 147.4 12.7 98 23-124 1265-1362(1381)
394 cd03241 ABC_RecN RecN ATPase i 99.3 3E-12 6.4E-17 129.0 9.3 76 34-112 170-249 (276)
395 COG0178 UvrA Excinuclease ATPa 99.3 6.4E-12 1.4E-16 137.0 12.1 110 9-124 801-919 (935)
396 cd03227 ABC_Class2 ABC-type Cl 99.3 8.4E-12 1.8E-16 115.6 10.1 75 34-110 77-155 (162)
397 COG1245 Predicted ATPase, RNas 99.3 4.5E-12 9.8E-17 130.3 8.3 94 10-109 436-530 (591)
398 TIGR01247 drrB daunorubicin re 99.3 5.3E-10 1.2E-14 109.8 22.6 225 233-489 1-233 (236)
399 COG4136 ABC-type uncharacteriz 99.3 7E-12 1.5E-16 111.3 7.7 85 5-94 110-195 (213)
400 TIGR00634 recN DNA repair prot 99.3 7.5E-12 1.6E-16 138.1 9.8 77 33-112 439-519 (563)
401 KOG0062 ATPase component of AB 99.3 1.9E-12 4.1E-17 134.9 4.6 106 7-120 175-281 (582)
402 KOG0062 ATPase component of AB 99.3 1.2E-11 2.6E-16 129.0 10.4 100 7-115 459-559 (582)
403 TIGR00618 sbcc exonuclease Sbc 99.3 1.8E-11 3.8E-16 144.4 11.3 81 30-111 946-1036(1042)
404 PRK10869 recombination and rep 99.2 2.4E-11 5.2E-16 133.3 10.5 105 5-112 374-509 (553)
405 PHA02562 46 endonuclease subun 99.2 2.4E-11 5.3E-16 134.3 9.5 79 31-113 465-555 (562)
406 TIGR01291 nodJ ABC-2 type tran 99.2 3.5E-09 7.5E-14 105.3 23.7 233 227-494 7-249 (253)
407 KOG0927 Predicted transporter 99.2 1.5E-11 3.2E-16 129.0 6.5 106 5-119 484-591 (614)
408 TIGR03062 pip_yhgE_Cterm YhgE/ 99.2 9.6E-10 2.1E-14 105.8 16.2 150 315-496 58-207 (208)
409 PF00005 ABC_tran: ABC transpo 99.1 8E-11 1.7E-15 105.4 7.3 57 6-63 81-137 (137)
410 COG0178 UvrA Excinuclease ATPa 99.1 3.3E-10 7.2E-15 123.9 13.1 105 14-124 465-577 (935)
411 COG4178 ABC-type uncharacteriz 99.1 1E-10 2.2E-15 126.6 8.7 99 7-108 487-586 (604)
412 TIGR00025 Mtu_efflux ABC trans 99.1 2.1E-08 4.6E-13 98.2 22.9 221 239-493 2-229 (232)
413 cd03285 ABC_MSH2_euk MutS2 hom 99.1 1E-10 2.3E-15 113.8 6.1 96 11-118 74-175 (222)
414 TIGR03861 phenyl_ABC_PedC alco 99.1 5.1E-08 1.1E-12 96.8 24.7 205 225-433 2-218 (253)
415 PRK10246 exonuclease subunit S 99.0 6.9E-10 1.5E-14 130.5 11.3 80 30-110 945-1032(1047)
416 PRK03918 chromosome segregatio 99.0 6E-10 1.3E-14 129.7 10.3 78 31-110 785-868 (880)
417 COG4615 PvdE ABC-type sideroph 99.0 3.3E-10 7.2E-15 114.9 6.9 109 7-117 421-530 (546)
418 cd03242 ABC_RecF RecF is a rec 99.0 5.5E-10 1.2E-14 112.1 8.4 76 33-113 182-269 (270)
419 KOG0066 eIF2-interacting prote 99.0 1.2E-09 2.7E-14 111.7 7.8 95 8-110 682-776 (807)
420 PRK01156 chromosome segregatio 98.9 6.4E-09 1.4E-13 121.3 13.8 77 31-109 798-883 (895)
421 PRK15066 inner membrane transp 98.9 3.1E-07 6.8E-12 91.4 24.0 240 224-496 7-253 (257)
422 KOG0066 eIF2-interacting prote 98.9 7.7E-10 1.7E-14 113.2 1.8 105 7-119 389-494 (807)
423 TIGR00606 rad50 rad50. This fa 98.8 5.9E-09 1.3E-13 125.6 9.1 69 33-102 1198-1277(1311)
424 cd03243 ABC_MutS_homologs The 98.8 1.3E-08 2.8E-13 97.7 8.8 86 33-121 90-176 (202)
425 TIGR02168 SMC_prok_B chromosom 98.8 5.9E-09 1.3E-13 124.7 7.8 77 30-109 1085-1165(1179)
426 PRK00064 recF recombination pr 98.8 1.2E-08 2.6E-13 106.6 9.0 78 32-113 271-359 (361)
427 KOG2355 Predicted ABC-type tra 98.8 1.3E-08 2.8E-13 95.3 7.9 109 8-124 128-237 (291)
428 smart00534 MUTSac ATPase domai 98.8 5.2E-09 1.1E-13 99.1 4.7 78 34-114 61-140 (185)
429 PRK02224 chromosome segregatio 98.7 3.1E-08 6.7E-13 115.4 9.5 78 32-111 779-869 (880)
430 TIGR02169 SMC_prok_A chromosom 98.7 2.3E-08 5.1E-13 119.6 8.7 77 31-110 1071-1151(1164)
431 KOG0060 Long-chain acyl-CoA tr 98.6 1.1E-07 2.4E-12 101.0 9.5 99 7-110 537-641 (659)
432 COG2401 ABC-type ATPase fused 98.6 1.7E-07 3.6E-12 96.1 8.4 100 10-113 486-587 (593)
433 PF02463 SMC_N: RecF/RecN/SMC 98.6 5.4E-07 1.2E-11 87.4 11.7 88 8-109 121-212 (220)
434 KOG0063 RNAse L inhibitor, ABC 98.6 1.2E-07 2.7E-12 97.3 7.1 98 7-110 191-288 (592)
435 TIGR00611 recf recF protein. A 98.5 1.2E-07 2.6E-12 99.1 7.1 60 33-95 274-342 (365)
436 PRK14079 recF recombination pr 98.5 1.8E-07 3.9E-12 97.3 7.8 75 33-115 262-345 (349)
437 cd03282 ABC_MSH4_euk MutS4 hom 98.5 2.5E-07 5.4E-12 89.0 6.9 61 33-94 90-151 (204)
438 COG0419 SbcC ATPase involved i 98.4 6.4E-07 1.4E-11 104.6 10.6 78 31-110 812-897 (908)
439 cd01124 KaiC KaiC is a circadi 98.4 5.4E-07 1.2E-11 84.8 7.6 80 30-109 67-163 (187)
440 COG0842 ABC-type multidrug tra 98.4 3.6E-05 7.9E-10 76.3 20.1 153 317-497 131-284 (286)
441 cd03283 ABC_MutS-like MutS-lik 98.4 2.2E-06 4.9E-11 82.1 10.2 71 37-108 88-163 (199)
442 PF13304 AAA_21: AAA domain; P 98.3 1.4E-06 3.1E-11 84.5 8.4 64 32-95 234-300 (303)
443 cd03284 ABC_MutS1 MutS1 homolo 98.3 8.7E-07 1.9E-11 86.0 6.2 86 33-122 84-179 (216)
444 KOG0063 RNAse L inhibitor, ABC 98.3 9.9E-07 2.1E-11 90.8 5.8 95 9-109 436-531 (592)
445 TIGR02680 conserved hypothetic 98.3 1.4E-06 3.1E-11 105.0 7.9 59 32-93 1245-1315(1353)
446 KOG0064 Peroxisomal long-chain 98.2 9.9E-07 2.1E-11 92.9 4.7 86 8-96 582-671 (728)
447 PRK00409 recombination and DNA 98.2 9.6E-07 2.1E-11 100.7 4.9 81 32-115 388-469 (782)
448 cd03281 ABC_MSH5_euk MutS5 hom 98.1 5.1E-06 1.1E-10 80.5 7.2 62 34-95 88-155 (213)
449 PF13558 SbcCD_C: Putative exo 98.1 6.3E-06 1.4E-10 68.5 6.4 48 32-79 30-90 (90)
450 PRK13695 putative NTPase; Prov 98.0 1.2E-05 2.5E-10 75.3 6.8 78 33-116 77-156 (174)
451 PF06422 PDR_CDR: CDR ABC tran 98.0 9.9E-06 2.2E-10 69.1 5.7 54 447-501 26-79 (103)
452 TIGR01069 mutS2 MutS2 family p 98.0 7.5E-06 1.6E-10 93.3 6.3 63 32-95 383-446 (771)
453 PTZ00132 GTP-binding nuclear p 98.0 1E-05 2.2E-10 78.2 5.3 44 39-82 157-205 (215)
454 TIGR01248 drrC daunorubicin re 97.9 0.00018 4E-09 65.8 13.2 128 301-433 17-146 (152)
455 TIGR03518 ABC_perm_GldF glidin 97.9 0.0014 3E-08 64.7 19.4 191 228-430 2-208 (240)
456 PF12679 ABC2_membrane_2: ABC- 97.8 0.0062 1.3E-07 60.7 23.3 163 304-493 89-273 (277)
457 TIGR02858 spore_III_AA stage I 97.8 5E-05 1.1E-09 76.1 7.6 73 40-121 182-266 (270)
458 PRK13830 conjugal transfer pro 97.7 5.3E-05 1.1E-09 87.4 7.2 70 50-119 650-728 (818)
459 COG1682 TagG ABC-type polysacc 97.7 0.031 6.7E-07 55.8 25.1 200 223-435 16-222 (263)
460 cd01125 repA Hexameric Replica 97.5 0.00023 4.9E-09 70.1 7.6 85 2-94 52-159 (239)
461 cd03286 ABC_MSH6_euk MutS6 hom 97.5 0.00026 5.5E-09 68.8 7.6 57 38-94 95-153 (218)
462 PRK08533 flagellar accessory p 97.5 0.00029 6.3E-09 69.0 7.3 75 35-109 96-184 (230)
463 PRK06067 flagellar accessory p 97.4 0.00084 1.8E-08 65.8 9.3 76 35-110 101-187 (234)
464 cd01128 rho_factor Transcripti 97.3 0.00013 2.8E-09 72.3 2.2 75 33-113 128-211 (249)
465 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00072 1.6E-08 65.9 7.4 63 38-102 96-160 (222)
466 cd01120 RecA-like_NTPases RecA 97.2 0.0011 2.5E-08 59.9 7.1 63 35-97 68-140 (165)
467 PRK15176 Vi polysaccharide exp 97.1 0.27 5.8E-06 49.2 24.4 66 367-437 160-228 (264)
468 COG3910 Predicted ATPase [Gene 97.1 0.0014 3E-08 61.2 7.0 67 28-95 123-189 (233)
469 PF13175 AAA_15: AAA ATPase do 97.1 0.0013 2.9E-08 69.5 7.6 65 31-95 338-413 (415)
470 PF12698 ABC2_membrane_3: ABC- 97.0 0.00019 4.2E-09 72.9 0.0 129 297-433 181-314 (344)
471 PF08370 PDR_assoc: Plant PDR 96.9 0.0021 4.6E-08 49.6 5.3 49 450-499 9-58 (65)
472 PRK13891 conjugal transfer pro 96.9 0.002 4.3E-08 74.9 7.4 55 45-100 680-735 (852)
473 COG4637 Predicted ATPase [Gene 96.9 0.0037 8E-08 62.8 8.0 62 33-95 269-332 (373)
474 PF03379 CcmB: CcmB protein; 96.7 0.097 2.1E-06 50.7 16.7 141 227-381 1-150 (215)
475 KOG0964 Structural maintenance 96.6 0.0015 3.2E-08 73.3 3.1 74 32-108 1095-1172(1200)
476 COG0497 RecN ATPase involved i 96.3 0.014 3.1E-07 63.4 8.7 75 33-110 430-508 (557)
477 TIGR02655 circ_KaiC circadian 96.3 0.00066 1.4E-08 73.9 -1.7 67 33-109 114-190 (484)
478 TIGR03185 DNA_S_dndD DNA sulfu 96.2 0.0077 1.7E-07 68.1 6.4 58 32-93 549-613 (650)
479 PF13166 AAA_13: AAA domain 96.1 0.033 7.2E-07 63.7 11.3 89 6-94 460-571 (712)
480 COG1277 NosY ABC-type transpor 96.1 1.8 3.9E-05 43.1 23.6 249 226-495 3-275 (278)
481 PRK13873 conjugal transfer ATP 96.0 0.014 3E-07 67.8 7.4 47 49-95 632-679 (811)
482 PRK07721 fliI flagellum-specif 95.6 0.033 7.2E-07 59.7 7.5 85 34-121 223-340 (438)
483 TIGR02788 VirB11 P-type DNA tr 95.5 0.012 2.5E-07 60.4 3.6 72 43-123 209-280 (308)
484 COG1196 Smc Chromosome segrega 95.0 0.048 1E-06 65.8 7.6 74 32-108 1064-1141(1163)
485 PRK13898 type IV secretion sys 94.9 0.07 1.5E-06 61.9 8.0 49 48-96 638-687 (800)
486 TIGR00152 dephospho-CoA kinase 94.8 0.018 3.8E-07 54.4 2.4 73 37-111 60-133 (188)
487 PRK05399 DNA mismatch repair p 94.8 0.096 2.1E-06 61.0 8.8 77 24-104 654-738 (854)
488 TIGR01190 ccmB heme exporter p 94.4 3.1 6.7E-05 40.2 16.8 135 231-380 2-146 (211)
489 KOG0962 DNA repair protein RAD 94.4 0.064 1.4E-06 63.1 6.1 59 35-93 1184-1253(1294)
490 PRK14088 dnaA chromosomal repl 94.4 0.068 1.5E-06 57.6 5.9 100 51-152 193-300 (440)
491 KOG0996 Structural maintenance 94.3 0.042 9.1E-07 63.4 4.2 75 32-109 1193-1271(1293)
492 PRK06793 fliI flagellum-specif 94.3 0.058 1.3E-06 57.5 5.1 81 32-119 219-306 (432)
493 PF12051 DUF3533: Protein of u 94.2 1.3 2.8E-05 46.9 15.0 113 315-435 240-357 (382)
494 COG4587 ABC-type uncharacteriz 94.1 6.5 0.00014 38.6 19.6 190 222-412 3-203 (268)
495 COG1511 Predicted membrane pro 93.8 1.9 4.1E-05 49.9 16.4 154 309-494 610-764 (780)
496 cd01131 PilT Pilus retraction 93.5 0.089 1.9E-06 50.2 4.4 57 44-109 66-122 (198)
497 COG1195 RecF Recombinational D 93.3 0.26 5.6E-06 51.3 7.5 75 34-113 275-361 (363)
498 PRK08699 DNA polymerase III su 93.1 0.084 1.8E-06 54.5 3.7 68 56-130 116-185 (325)
499 KOG0933 Structural maintenance 92.7 0.07 1.5E-06 60.7 2.5 61 33-93 1081-1145(1174)
500 COG4694 Uncharacterized protei 92.6 0.35 7.5E-06 52.1 7.3 67 34-101 529-603 (758)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-81 Score=696.29 Aligned_cols=471 Identities=27% Similarity=0.506 Sum_probs=412.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCc-ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNW-HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~-~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++++++++++++.+||.+++|+++|+. ..++||||||||++||++|+.+|++++|||||+|||+.++.++++.|+++
T Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 133 TKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHH
Confidence 34667788999999999999999999985 36899999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCcccccccccc
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLK 160 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (527)
+++|+|+|+++|||+.+++++||++++|++|+++|.|+++++.+||++.|++||++.||+|+++++++.+.+.
T Consensus 213 ~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~------- 285 (617)
T TIGR00955 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGS------- 285 (617)
T ss_pred HhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccc-------
Confidence 9889999999999988999999999999999999999999999999999999999999999999987643210
Q ss_pred CCCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccC-----ccc-cccCCCCCCHHHHHHHHHHHH
Q 009738 161 SQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE-----QEE-TVLSKDRASWWKQLCILSHRS 234 (527)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~s~~~Q~~~L~~R~ 234 (527)
+ ....+..+++.+.|+.++..++..+........+ ... .....+..+|++|+.+|++|+
T Consensus 286 -----~----------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 350 (617)
T TIGR00955 286 -----E----------NESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS 350 (617)
T ss_pred -----c----------cchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHH
Confidence 0 0012234556777777766555444332211110 001 112345789999999999999
Q ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhcCCC
Q 009738 235 FLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRERISCH 313 (527)
Q Consensus 235 ~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~-~~~~~~f~~er~v~~rE~~~g~ 313 (527)
+++.+|||.++..|+++.+++|+++|++|++++++++++++|.|++|++.+++.+.+ ...++.|+.||++|+||+.+|+
T Consensus 351 ~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~ 430 (617)
T TIGR00955 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430 (617)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999999999888877765 4668899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 009738 314 YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTAL 393 (527)
Q Consensus 314 Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~~~~ 393 (527)
|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+|++|++++++..+++.++++++++++|+..+|+.+++++
T Consensus 431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 510 (617)
T TIGR00955 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPF 510 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCcc-CCCC---CCCCCCcHHHHHHHhhCCcCcch
Q 009738 394 IVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEF-DPAV---PGDPKLKGEEILLKLYGVQLNYC 469 (527)
Q Consensus 394 ~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~-~~~~---~~~~~~~G~~~L~~~~~~~~~~~ 469 (527)
+.++++|+||+++.++||.| |+| ++|+||++|++||++.|||.|.++ +|.. .+.|..+|+++|+. +|++.+ +
T Consensus 511 ~~~~~lf~G~~i~~~~ip~~-~~W-~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~~~~-~ 586 (617)
T TIGR00955 511 VIPFLLFGGFFINSDSIPVY-FKW-LSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSFRNA-D 586 (617)
T ss_pred HHHHHHHhhcccChhhccHH-HHH-HHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCCCcc-c
Confidence 99999999999999999985 899 999999999999999999999775 4432 12244689999985 788754 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009738 470 KWWDLAALFCILTCYKIVLFATLKYKDKA 498 (527)
Q Consensus 470 ~w~~~~iL~~~~v~f~~~~~~~L~~~~~~ 498 (527)
.|.|+++|++++++|++++|++|+++.+.
T Consensus 587 ~~~~~~il~~~~~~~~~l~~~~L~~~~~~ 615 (617)
T TIGR00955 587 LYLDLIGLVILIFFFRLLAYFALRIRIRR 615 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999987653
No 2
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-82 Score=696.36 Aligned_cols=471 Identities=34% Similarity=0.608 Sum_probs=406.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++++++|+++++++||++|+|+.+|+...||+||||||||+||.+|+.||.||+|||||+|||+.++.++++.||+++
T Consensus 138 ~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 138 SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 57899999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCccccccccccC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKS 161 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (527)
++|+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||++++++.+ +.....
T Consensus 218 ~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~-~~~~~~---- 292 (613)
T KOG0061|consen 218 RSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVD-SGTREL---- 292 (613)
T ss_pred hCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccC-CCchhH----
Confidence 999999999999999999999999999999999999999999999999999999999999999998753 100000
Q ss_pred CCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccCccccccCCCCCCHHHHHHHHHHHHHHHHHhC
Q 009738 162 QAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQEETVLSKDRASWWKQLCILSHRSFLNMLRD 241 (527)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd 241 (527)
..........+.++..+...+.......... ..... .....++|+.|++.|++|.+++.+||
T Consensus 293 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~s~~~q~~~L~~R~~~~~~R~ 354 (613)
T KOG0061|consen 293 ----------------EEAVRIAKLINKFSQTDNLKKTLEALEKSLS-TSKKV-EIGTSPSWWTQFKILLKRSLKNIRRD 354 (613)
T ss_pred ----------------HhHHHHHHHhhhccccchhhhhHHHHhhhcc-ccccc-ccccCCcHHHHHHHHHHHHhHHHhhc
Confidence 0001111122222211111111000000000 00000 11116899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhcCCCCChhHHH
Q 009738 242 MGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKASYRERISCHYGEAVFV 320 (527)
Q Consensus 242 ~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~f~~er~v~~rE~~~g~Y~~~~y~ 320 (527)
|.+...|+++.+++|+++|.+||+++++..++++|.|+++|+..++.+.+. ..++.|+.||++|.||+.+|+|+.++|+
T Consensus 355 ~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~ 434 (613)
T KOG0061|consen 355 PSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYY 434 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHH
Confidence 999999999999999999999999999999999999999999998877655 5799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHh
Q 009738 321 LSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMV 400 (527)
Q Consensus 321 la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf 400 (527)
+|++++++|+.++.+++|.+|+|||+|++++..+|++|++.+++..+++++++++++++.||..+|+.+++++++.+++|
T Consensus 435 la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~ 514 (613)
T KOG0061|consen 435 LAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLF 514 (613)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCC--CCCCCcHHHHHHHhhCCcCcchhhhHHHHHH
Q 009738 401 SPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVP--GDPKLKGEEILLKLYGVQLNYCKWWDLAALF 478 (527)
Q Consensus 401 ~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~--~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~ 478 (527)
+||+++.++||.| |+| ++|+|+++|++||++.|||.+....|... .++..+|+++|+. .+++. .+.|.|+.+++
T Consensus 515 ~G~fi~~~~ip~~-~~w-~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~~~l~~l~ 590 (613)
T KOG0061|consen 515 GGFFINFDSIPKY-FRW-ISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQ-LGFED-SSFWLDLLVLL 590 (613)
T ss_pred hhhhcCcccccHH-HHH-HHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHh-cCCcc-cccchhHHHHH
Confidence 9999999999985 777 99999999999999999998732333222 4577899999986 47764 45899999999
Q ss_pred HHHHHHHHHHHHHHHhhcchh
Q 009738 479 CILTCYKIVLFATLKYKDKAS 499 (527)
Q Consensus 479 ~~~v~f~~~~~~~L~~~~~~~ 499 (527)
+++++|++++|++|+++.+..
T Consensus 591 ~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 591 AFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999988753
No 3
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.8e-81 Score=741.43 Aligned_cols=474 Identities=22% Similarity=0.344 Sum_probs=415.0
Q ss_pred HHHHHH-HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDI-VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~-v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++..++ ++++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++
T Consensus 178 ~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~ 257 (1394)
T TIGR00956 178 EEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN 257 (1394)
T ss_pred HHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHH
Confidence 343334 5678999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCccccccccccC
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKS 161 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (527)
+ |+|+|+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++.+.+.+......
T Consensus 258 ~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~--- 334 (1394)
T TIGR00956 258 ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGY--- 334 (1394)
T ss_pred hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccc---
Confidence 5 899999999998899999999999999999999999999999999999999999999999998764322111000
Q ss_pred CCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhcc----------------C-c-cccccCCCCCCH
Q 009738 162 QAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHN----------------E-Q-EETVLSKDRASW 223 (527)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~----------------~-~-~~~~~~~~~~s~ 223 (527)
+ . .. ....+++.+.|++|..+++..+.++....+ + . .....+.+..|+
T Consensus 335 ----e-----~-~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 400 (1394)
T TIGR00956 335 ----E-----K-KV----PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSF 400 (1394)
T ss_pred ----c-----c-cC----CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCH
Confidence 0 0 00 011245778888887666555544332110 0 0 001123467899
Q ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009738 224 WKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHK 303 (527)
Q Consensus 224 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~f~~er~ 303 (527)
++|+++|++|++++.+|||.++..|+++.+++|+++|++||+++++++++++|.|++||+..+.+++++..++.++.||+
T Consensus 401 ~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~ 480 (1394)
T TIGR00956 401 SMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARP 480 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhh
Q 009738 304 ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNV 383 (527)
Q Consensus 304 v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~ 383 (527)
+|+||+++|+|++++|++|++++|+|+.++.+++|++|+|||+||++++++|++|++++++..+++.+++.++++++|++
T Consensus 481 i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~ 560 (1394)
T TIGR00956 481 IVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTL 560 (1394)
T ss_pred ceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCC--C--------------
Q 009738 384 LMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAV--P-------------- 447 (527)
Q Consensus 384 ~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~--~-------------- 447 (527)
.+|+.+++++++++++|+||+++.++||.| |+| ++|+||++|||||++.|||.|.+++|.. |
T Consensus 561 ~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~-~~W-~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~ 638 (1394)
T TIGR00956 561 SEAMTPAAILLLALSIYTGFAIPRPSMLGW-SKW-IYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKV 638 (1394)
T ss_pred HHHHHHHHHHHHHHHHHcccccChhhccHH-HHH-HHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCcc
Confidence 999999999999999999999999999985 899 9999999999999999999998887741 1
Q ss_pred --------CCCCCcHHHHHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009738 448 --------GDPKLKGEEILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYKDK 497 (527)
Q Consensus 448 --------~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~ 497 (527)
|.++.+|+++|+..+|++.+ +.|+|++||++++++|+++.++++.+.++
T Consensus 639 C~~~g~~~g~~~~~G~~~L~~~~~~~~~-~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 639 CTVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccCCCCcCCcccccHHHHHHhcCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11356999999976788754 59999999999999999999999998773
No 4
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=9.1e-81 Score=690.68 Aligned_cols=461 Identities=23% Similarity=0.399 Sum_probs=384.2
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++++++++++++.+||++++|+.+|+...++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|+++++
T Consensus 175 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~ 254 (659)
T PLN03211 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ 254 (659)
T ss_pred HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh
Confidence 45666789999999999999999999988999999999999999999999999999999999999999999999999998
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCccccccccccCC
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQ 162 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (527)
+|+|||+++|||+.++.++||++++|++|++++.|+++++.+||+++|++||.+.||+||++++.+.+.+. +. .
T Consensus 255 ~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~--~~----~ 328 (659)
T PLN03211 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQT--DG----V 328 (659)
T ss_pred CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccC--CC----c
Confidence 89999999999987899999999999999999999999999999999999999999999999988653210 00 0
Q ss_pred CCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHh--hc-c-------Ccccc--ccCCCCCCHHHHHHHH
Q 009738 163 APTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVREL--AH-N-------EQEET--VLSKDRASWWKQLCIL 230 (527)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~-~-------~~~~~--~~~~~~~s~~~Q~~~L 230 (527)
...+ .....+.+.+.|++.. ..+..+..+.. .. . ..... ....+.++|++|+.+|
T Consensus 329 ~~~~------------~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L 395 (659)
T PLN03211 329 SERE------------KPNVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395 (659)
T ss_pred cccc------------cchHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHH
Confidence 0000 0011123444453221 11111111000 00 0 00000 0112457899999999
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhh
Q 009738 231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLIC-LSVGGLPSFIEEHKASYRER 309 (527)
Q Consensus 231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~-~~~~~~~~f~~er~v~~rE~ 309 (527)
++|++++ +||+.+...|+++.+++|+++|++||+++ ..++++|.|++||+..++.+ .++..++.|+.||++|+||+
T Consensus 396 ~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~ 472 (659)
T PLN03211 396 LQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKER 472 (659)
T ss_pred HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999998 89999999999999999999999999985 67899999999999887665 45678999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 009738 310 ISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGV 389 (527)
Q Consensus 310 ~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~ 389 (527)
.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++|+++++++|+..+|+.+
T Consensus 473 ~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~ 552 (659)
T PLN03211 473 ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTI 552 (659)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCc-----cCCCCCCC-----CCCcHHHHHH
Q 009738 390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLE-----FDPAVPGD-----PKLKGEEILL 459 (527)
Q Consensus 390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~-----~~~~~~~~-----~~~~G~~~L~ 459 (527)
++++++++++|+||+++ +||.| |+| ++|+||++|||||++.|||.+.. ++|..+.+ +...++..+
T Consensus 553 ~~~~~~~~~lfsGf~i~--~ip~~-~~W-~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~- 627 (659)
T PLN03211 553 VTVTMLAFVLTGGFYVH--KLPSC-MAW-IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVA- 627 (659)
T ss_pred HHHHHHHHHHHhhhhHh--hchHH-HHH-HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhh-
Confidence 99999999999999996 79985 899 99999999999999999997643 24532221 222333332
Q ss_pred HhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009738 460 KLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYKD 496 (527)
Q Consensus 460 ~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~ 496 (527)
+ +.+.|.|+++|++++++|++++|++|++.+
T Consensus 628 -----~-~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 628 -----G-QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred -----c-ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 235899999999999999999999998654
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.6e-78 Score=716.98 Aligned_cols=466 Identities=23% Similarity=0.376 Sum_probs=410.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++++.++++++++.+||++++|+.+|++.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++
T Consensus 988 ~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~ 1067 (1470)
T PLN03140 988 KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1067 (1470)
T ss_pred HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999877889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeC-CeEEEEeCh----hhHHHHHhhc-CCC-CCCCCCchHHHHHhhccCccccc
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSN-GETIYFGDA----KMAVKFFAEA-GFP-CPSRRNPSDHFLRCINSDFDKVA 155 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~-G~~~~~G~~----~~~~~~f~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~~ 155 (527)
+|+|||+++|||+.++++.||++++|++ |+++|+|++ +++.+||+++ |.+ ||+..||+||+++++..+.+.
T Consensus 1068 ~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-- 1145 (1470)
T PLN03140 1068 TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-- 1145 (1470)
T ss_pred CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc--
Confidence 9999999999998788999999999996 899999996 5789999997 664 999999999999986432100
Q ss_pred cccccCCCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccCcc--cc-ccCCCCCCHHHHHHHHHH
Q 009738 156 GSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQE--ET-VLSKDRASWWKQLCILSH 232 (527)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~s~~~Q~~~L~~ 232 (527)
....++.+.|++|..+++..+.+++....... .. ....+.+++++|+.+|++
T Consensus 1146 -------------------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~ 1200 (1470)
T PLN03140 1146 -------------------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLW 1200 (1470)
T ss_pred -------------------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHH
Confidence 00124788899888777665555443322111 11 134578999999999999
Q ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCCh---hhhhhhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHh
Q 009738 233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLS-VGGLPSFIEEHKASYRE 308 (527)
Q Consensus 233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~---~~i~~r~~~l~f~~~~~~~~~-~~~~~~f~~er~v~~rE 308 (527)
|+++++||||.+...|+++.+++|+++|++||++++++ ++++++.|++|+++.++.+.. ...+|.|..||++|+||
T Consensus 1201 R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~RE 1280 (1470)
T PLN03140 1201 KQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRE 1280 (1470)
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765 567788998888887776644 35679999999999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 009738 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG 388 (527)
Q Consensus 309 ~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~ 388 (527)
|++|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++..|++|++++++..+++.++|+++++++|+..+|..
T Consensus 1281 r~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~ 1360 (1470)
T PLN03140 1281 RAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAI 1360 (1470)
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCC-CCCcHHHHHHHhhCCcCc
Q 009738 389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGD-PKLKGEEILLKLYGVQLN 467 (527)
Q Consensus 389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~-~~~~G~~~L~~~~~~~~~ 467 (527)
+++++++++++|+||+++.++||.| |+| ++|+||++|+++|++.|||.|.+++|.+++. +..+|++++...||++.+
T Consensus 1361 ~~~~~~~~~~lf~Gf~i~~~~iP~~-~~W-~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 1438 (1470)
T PLN03140 1361 FAAAFYGLFNLFSGFFIPRPKIPKW-WVW-YYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPD 1438 (1470)
T ss_pred HHHHHHHHHHHHeeeccChHHCchH-HHH-HHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcc
Confidence 9999999999999999999999985 898 9999999999999999999998876655542 235789998888999865
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009738 468 YCKWWDLAALFCILTCYKIVLFATLKYKDKA 498 (527)
Q Consensus 468 ~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~~ 498 (527)
+ .|+++++++++.++|++++++++++.+..
T Consensus 1439 ~-~~~~~~il~~~~~~f~~~~~~~~~~~~~q 1468 (1470)
T PLN03140 1439 F-MGPVAAVLVGFTVFFAFIFAFCIRTLNFQ 1468 (1470)
T ss_pred c-ccchhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 4 89999999999999999999999987764
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.2e-78 Score=717.96 Aligned_cols=471 Identities=21% Similarity=0.368 Sum_probs=407.5
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~tv 87 (527)
.++++++.+||++|+||.+|+..+++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .|+|+
T Consensus 311 ~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tv 390 (1470)
T PLN03140 311 ITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATV 390 (1470)
T ss_pred HHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999987 58999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCccccccccccCCCCCCC
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEI 167 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (527)
|+++|||+++++++||++++|++|+++|+|+++++.+||+++|++||++.||+||++++.+.+..+.. ....
T Consensus 391 iis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~------~~~~-- 462 (1470)
T PLN03140 391 LMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQY------WADR-- 462 (1470)
T ss_pred EEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhh------hhcc--
Confidence 99999998899999999999999999999999999999999999999999999999998764211000 0000
Q ss_pred CCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccC---ccccccCCCCCCHHHHHHHHHHHHHHHHHhChHH
Q 009738 168 PMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNE---QEETVLSKDRASWWKQLCILSHRSFLNMLRDMGY 244 (527)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~ 244 (527)
..+.... ..+++.+.|++++.+++..++++...... ......+.+..+++.|++.|++|+++.++||+..
T Consensus 463 ---~~p~~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~ 535 (1470)
T PLN03140 463 ---NKPYRYI----SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFV 535 (1470)
T ss_pred ---CCccccC----CHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHH
Confidence 0000001 12457888998887766655543321111 1111234578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCh---hhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 009738 245 YWLRIVFYVLVSITVGILYLNVGLSN---PAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVL 321 (527)
Q Consensus 245 ~~~r~~~~~~~~li~G~lf~~l~~~~---~~i~~r~~~l~f~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~l 321 (527)
+..|+++.+++|+++|++||+++.++ .+.+.+.|.+||++.+.++++++.++.++.||+||+|||+.++|++++|++
T Consensus 536 ~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~l 615 (1470)
T PLN03140 536 YVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTL 615 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHH
Confidence 99999999999999999999997543 234556788888888888888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhh
Q 009738 322 SNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVS 401 (527)
Q Consensus 322 a~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~ 401 (527)
|++++++|+.++.+++|++|+|||+||++++++||+|+++++++.+++.+++.++++++|++.+|+.++++++.++++|+
T Consensus 616 a~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~ 695 (1470)
T PLN03140 616 PTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLG 695 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCC-CCCCCCCcHHHHHHHhhCCcCc-chhhhHHHHHHH
Q 009738 402 PVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPA-VPGDPKLKGEEILLKLYGVQLN-YCKWWDLAALFC 479 (527)
Q Consensus 402 Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~-~~~~~~~~G~~~L~~~~~~~~~-~~~w~~~~iL~~ 479 (527)
||+++.++||+| |+| ++|+||++||+||++.|||.+..+.+. +.+.....|+++|+. +|+..+ .+.|+|+++|++
T Consensus 696 Gf~i~~~~ip~w-~~W-~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~-~g~~~~~~~~w~~~~iL~~ 772 (1470)
T PLN03140 696 GFILPKGEIPNW-WEW-AYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI-FDVFTDKNWYWIGVGALLG 772 (1470)
T ss_pred cceechHhCchH-HHH-HHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-cCcCccccchhhhHHHHHH
Confidence 999999999985 999 999999999999999999988765421 123356799999974 688654 347999999999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 009738 480 ILTCYKIVLFATLKYKDK 497 (527)
Q Consensus 480 ~~v~f~~~~~~~L~~~~~ 497 (527)
++++|+++++++|++.++
T Consensus 773 ~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 773 FTILFNVLFTLALTYLNP 790 (1470)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 999999999999998774
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.7e-76 Score=697.96 Aligned_cols=462 Identities=24% Similarity=0.385 Sum_probs=399.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-VLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~-llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++++++++++++.+||++++|+.+|+.. ++|||||||||+||++|+.+|+ +|||||||+|||+.++..+++.|++++
T Consensus 871 ~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la 949 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLA 949 (1394)
T ss_pred HHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 45667889999999999999999998543 3799999999999999999997 999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCC-eEEEEeCh----hhHHHHHhhcCC-CCCCCCCchHHHHHhhccCccccc
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNG-ETIYFGDA----KMAVKFFAEAGF-PCPSRRNPSDHFLRCINSDFDKVA 155 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G-~~~~~G~~----~~~~~~f~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 155 (527)
++|+|||+++|||+..+++.||++++|++| +++|.|++ +++.+||++.|+ +||++.||+||++|+++.+...
T Consensus 950 ~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~-- 1027 (1394)
T TIGR00956 950 DHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGA-- 1027 (1394)
T ss_pred HcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhccccc--
Confidence 899999999999987788899999999987 99999997 567899999996 9999999999999987532110
Q ss_pred cccccCCCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccCc----c--ccccCCCCCCHHHHHHH
Q 009738 156 GSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQ----E--ETVLSKDRASWWKQLCI 229 (527)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~Q~~~ 229 (527)
+..+++.+.|+.|...++..+.++....... . ....+++.+||++|+++
T Consensus 1028 -------------------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~ 1082 (1394)
T TIGR00956 1028 -------------------------HANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082 (1394)
T ss_pred -------------------------chhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHH
Confidence 0012367778777766555544433322110 0 01124578999999999
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHh
Q 009738 230 LSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKAS-YRE 308 (527)
Q Consensus 230 L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~f~~er~v~-~rE 308 (527)
|++|++++.||||.++..|+++.+++|+++|++|+++++++.++++|.|.+|+...+..+.....+|.|+.||.+| +||
T Consensus 1083 l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE 1162 (1394)
T TIGR00956 1083 VLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRE 1162 (1394)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988887776666567789999999886 899
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhch
Q 009738 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSH-------YCHFCLSLFCCVSIVETCMMVVALLVP 381 (527)
Q Consensus 309 ~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~-------f~~f~l~~~~~~~~~~~~~~~v~~~~~ 381 (527)
+++|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.. |++|++++++...+++++|+++++++|
T Consensus 1163 ~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~ 1242 (1394)
T TIGR00956 1163 RPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNP 1242 (1394)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999988755 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCC--------------
Q 009738 382 NVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVP-------------- 447 (527)
Q Consensus 382 ~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~-------------- 447 (527)
+..+|..+++++++++++|+||+++.++||.+ |+| ++|+||++|+++|++.|||.|.+++|...
T Consensus 1243 ~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~-~~w-~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~ 1320 (1394)
T TIGR00956 1243 NADNAAVLASLLFTMCLSFCGVLAPPSRMPGF-WIF-MYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCG 1320 (1394)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCChhHCcHH-HhH-HHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHH
Confidence 99999999999999999999999999999985 898 99999999999999999999987654321
Q ss_pred ------------------------CCCCCcHHHHHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009738 448 ------------------------GDPKLKGEEILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYKDK 497 (527)
Q Consensus 448 ------------------------~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~ 497 (527)
.|++.+|+++|+. ++++.+ +.|+|+++++++++++ ++++++|++..+
T Consensus 1321 ~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1321 EYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-ccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 1135699999996 577643 4899999999999988 888888887654
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-75 Score=654.79 Aligned_cols=472 Identities=25% Similarity=0.412 Sum_probs=421.4
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tv 87 (527)
.++.+++.+||++|+||++||...||+||||||||++|.+++.+|+++++||+|+|||+.++.++++.||++++. +.|.
T Consensus 235 ~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~ 314 (1391)
T KOG0065|consen 235 MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATA 314 (1391)
T ss_pred HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceE
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999985 8899
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhhcCCCCCCCCCchHHHHHhhccCccccccccccCCCCCCC
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAEAGFPCPSRRNPSDHFLRCINSDFDKVAGSSLKSQAPTEI 167 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (527)
++++|||+++++++||+|++|++|+++|+||.+++++||++.|+.||++++++||+.++.+.. ++ .. ...
T Consensus 315 ~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k-~~--~~---~~~---- 384 (1391)
T KOG0065|consen 315 LVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKK-DQ--EQ---YWN---- 384 (1391)
T ss_pred EEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCc-cc--cc---ccc----
Confidence 999999999999999999999999999999999999999999999999999999999887621 11 00 000
Q ss_pred CCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccCcc---ccccCCCCCCHHHHHHHHHHHHHHHHHhChHH
Q 009738 168 PMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQE---ETVLSKDRASWWKQLCILSHRSFLNMLRDMGY 244 (527)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~Q~~~L~~R~~~~~~Rd~~~ 244 (527)
+...+....+ .+++.+.|.+++.+++...+++....+... ....+.+..+.|.|+.+|++|.|..+.||..+
T Consensus 385 -~~~~~~~~~~----~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~ 459 (1391)
T KOG0065|consen 385 -KRSKPYPYTS----VSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFY 459 (1391)
T ss_pred -ccCCCcccCC----HHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceE
Confidence 0011111111 245889999999888877776654332211 12245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC-CChhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 009738 245 YWLRIVFYVLVSITVGILYLNVG-LSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASYRERISCHYGEAVFVLSN 323 (527)
Q Consensus 245 ~~~r~~~~~~~~li~G~lf~~l~-~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~ 323 (527)
+..+.++.+++|+++|++|++.+ .+..+.+.|.|++||...+.++++++.++..++.||||+|||...+|++|+|.++.
T Consensus 460 ~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s 539 (1391)
T KOG0065|consen 460 YVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALAS 539 (1391)
T ss_pred EEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHH
Confidence 99999999999999999999999 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhcc
Q 009738 324 FLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPV 403 (527)
Q Consensus 324 ~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf 403 (527)
+++++|+.++.+++|.+|+||++||.+++++||.++++++++.+|+.+++.++++++++...|+.+|++.+..+.+++||
T Consensus 540 ~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf 619 (1391)
T KOG0065|consen 540 TLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGF 619 (1391)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCC---------------------CCCCCCcHHHHHHHhh
Q 009738 404 FRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAV---------------------PGDPKLKGEEILLKLY 462 (527)
Q Consensus 404 ~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~---------------------~~~~~~~G~~~L~~~~ 462 (527)
+++.++||+ ||+| ++|+||+.||+|+++.|||.|+.++|.+ +|..++.|+++++..|
T Consensus 620 ~Ip~~~m~~-W~~W-i~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~ 697 (1391)
T KOG0065|consen 620 VIPKKDMPP-WFRW-IAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQY 697 (1391)
T ss_pred eeeccccch-HHHH-HHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEeccccccccc
Confidence 999999997 5999 9999999999999999999999888761 1234578889988877
Q ss_pred CCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcch
Q 009738 463 GVQLNYCKWWDLAALFCILTCYKIVLFATLKYKDKA 498 (527)
Q Consensus 463 ~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~~ 498 (527)
+++. ++.|+|+||++|+.++|.++..+++.|.++.
T Consensus 698 ~y~~-~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 698 QYEY-KWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred cccc-ceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 7774 4589999999999999999999998887743
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-73 Score=632.10 Aligned_cols=465 Identities=26% Similarity=0.403 Sum_probs=403.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP-TVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p-~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+.+|+.+.||++++.++|++++|..||++. +|||.+|||||+||.+|+.+| .||||||||||||+.++..+++.+|++
T Consensus 898 ~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 898 SDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred CHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence 567888999999999999999999999988 999999999999999999999 899999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEe-CCeEEEEeChhh----HHHHHhhcC-CCCCCCCCchHHHHHhhccCcccc
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGDAKM----AVKFFAEAG-FPCPSRRNPSDHFLRCINSDFDKV 154 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~-~G~~~~~G~~~~----~~~~f~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (527)
++.|+||+||+|||+.++++.||++++|+ +|+++|.|+..+ +++||+++| .+||...|||||++|++....+.
T Consensus 977 a~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~- 1055 (1391)
T KOG0065|consen 977 ADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEA- 1055 (1391)
T ss_pred HhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhccccccc-
Confidence 99999999999999999999999999996 799999999754 567999985 89999999999999987532110
Q ss_pred ccccccCCCCCCCCCCCCccccccHHHHHHHHHHHHhcchhhHHHHHHHHHhhccCcc-ccc---cCCCCCCHHHHHHHH
Q 009738 155 AGSSLKSQAPTEIPMSSNSQMYLSTEEIKAKLVEEYRNSEISMDIRQRVRELAHNEQE-ETV---LSKDRASWWKQLCIL 230 (527)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~s~~~Q~~~L 230 (527)
+...++.+.|++|+.++.+.+.+++....... ..+ .+++.+|++.|+..+
T Consensus 1056 --------------------------~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~ 1109 (1391)
T KOG0065|consen 1056 --------------------------SLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLC 1109 (1391)
T ss_pred --------------------------ccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHH
Confidence 01125899999999999998888877654332 222 456789999999999
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhh
Q 009738 231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVG-GLPSFIEEHKASYRER 309 (527)
Q Consensus 231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~~-~~~~f~~er~v~~rE~ 309 (527)
++|++..+||+|.++++|+++.++.||++|+.||+++.+.++++|..+..|...++....... ..+.+..||.+++||+
T Consensus 1110 l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~ 1189 (1391)
T KOG0065|consen 1110 LWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRER 1189 (1391)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeec
Confidence 999999999999999999999999999999999999999999999998887666655443333 3455667888899999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q 009738 310 ISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGV 389 (527)
Q Consensus 310 ~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~ 389 (527)
.+|+|++++|++|++++|+|+.++.+++|.+|.|+|+|+.+++.+|++|++.++++.+....+|+++.+++||.++|.++
T Consensus 1190 ~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~ 1269 (1391)
T KOG0065|consen 1190 ASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVI 1269 (1391)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCC------CCCcHHHHHHHhhC
Q 009738 390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGD------PKLKGEEILLKLYG 463 (527)
Q Consensus 390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~------~~~~G~~~L~~~~~ 463 (527)
.+.+++++.+|||++++.+.||.| |+| ++|+||+.|..++++..++.+.+-.|...+. +..+..++++..+|
T Consensus 1270 ~s~~~s~~~~F~G~l~p~~~iP~f-W~w-my~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~ 1347 (1391)
T KOG0065|consen 1270 ASLFFSFWNLFSGFLQPRSLIPKF-WIW-MYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFG 1347 (1391)
T ss_pred HHHHHHHHHHhcccccccccccce-eee-eeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhc
Confidence 999999999999999999999985 999 9999999999999999999987766654331 12345567777777
Q ss_pred ----CcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009738 464 ----VQLNYCKWWDLAALFCILTCYKIVLFATLKYKDK 497 (527)
Q Consensus 464 ----~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~ 497 (527)
+..+. .-...++.+++.+++.+++....++.++
T Consensus 1348 ~~~Gy~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1348 EGTGYLHNP-LATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred cCcceeccC-cceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 44332 2234456667888888888888777665
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=6.6e-27 Score=218.55 Aligned_cols=116 Identities=26% Similarity=0.387 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++|.++++.++|+.+||.+.+|. +|.+|||||||||+|||||+.+|+++|+|||||.|||....++.+.+++|
T Consensus 108 ~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 108 LSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988775 45679999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+++|.|.|++||+ +..+.+.+|||++|++|+++..|++++.
T Consensus 183 A~eGmTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 183 AEEGMTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHcCCeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999 5789999999999999999999988854
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.8e-26 Score=226.06 Aligned_cols=116 Identities=27% Similarity=0.391 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++++++||.++|+.+||++.++. +|.+|||||||||+|||||+.+|+|||+|||||.|||.++..|.++|+++
T Consensus 113 ~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 113 VPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 4789999999999999999987765 45679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.++ |.||++++|+ ++.+.++|||+.+|++|+++..|+..++
T Consensus 188 n~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 188 NRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 876 9999999999 5789999999999999999999998765
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=9.7e-26 Score=214.87 Aligned_cols=119 Identities=19% Similarity=0.390 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++++++++|+++.+||++. ...+++|++|||||+|||.+||||+.+|+++|||||++.|||.++.++.+.+++++
T Consensus 106 ~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq 182 (309)
T COG1125 106 DKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHH
Confidence 678899999999999999752 24456788999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++ |+|||+++|| .+|..+++||+++|++|+++..++|+++..
T Consensus 183 ~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 183 KELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 86 9999999999 579999999999999999999999998764
No 13
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-25 Score=207.13 Aligned_cols=118 Identities=27% Similarity=0.456 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++..+.+++.+++.+.++|.++.|+.+|+ +|.||||||+|||||+++|++++|||||||||..++..+.+.++++
T Consensus 105 l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~ 179 (245)
T COG4555 105 LSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179 (245)
T ss_pred hhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHh
Confidence 35678899999999999999999999985 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+++|++||.++|. ++++..+||+++++++|++++.|+.++...
T Consensus 180 k~egr~viFSSH~-m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 180 KNEGRAVIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred hcCCcEEEEeccc-HHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999 578999999999999999999999886543
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=4.7e-25 Score=209.16 Aligned_cols=119 Identities=27% Similarity=0.422 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++++++.+..-|+.+||.... .+.+|.+|||||+||+++|||++.+|+|+++||||+||||.++..+-++|+++
T Consensus 116 lp~~~i~~lv~~KL~~VGL~~~~----~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 116 LPESLIRELVLMKLELVGLRGAA----ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCChhh----hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 36778889999999999998652 34567789999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.+. |.|++++|||. ++++.+|||+++|.+|+++..|+++++.+
T Consensus 192 ~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 192 NDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 986 99999999995 68999999999999999999999998753
No 15
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=4.9e-25 Score=214.76 Aligned_cols=117 Identities=26% Similarity=0.451 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.++++++++++++.+||++.+++.. ..|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.+++++
T Consensus 111 ~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 111 PREEIEERVAEALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185 (235)
T ss_pred CHHHHHHHHHHHHHHcCchhhccCCc-----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 56789999999999999999877665 4699999999999999999999999999999999999999999999999
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++ |+|+|+++|+ .+.+..++|++++|++|+++++|+++++.+
T Consensus 186 ~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 186 EEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 88 6899999999 578999999999999999999999876543
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.1e-24 Score=211.86 Aligned_cols=112 Identities=26% Similarity=0.482 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++|+.+|+.+.+|+.+|+ |||||+|||-|||||+++|++|+|||||+|+|+.++..+.++|++++++|
T Consensus 115 ~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 115 KDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred HHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 3478999999999999999999986 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+||++++||. ..+.+.||+++.|++ ++++.|+++++.
T Consensus 190 ~tIl~vtHDL-~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 190 KTVLMVTHDL-GLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred CEEEEEeCCc-HHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999997 579999999999965 678889998764
No 17
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=1.4e-24 Score=212.02 Aligned_cols=114 Identities=32% Similarity=0.488 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.++.+++.|+.+|+++.+++.+. +|||||||||.|||||+++|++|+|||||+.||...+.++++++++++++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~ 187 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHh
Confidence 3445589999999999999999886 49999999999999999999999999999999999999999999999964
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++||+ +...++||++++|++|+++..|+|+++.
T Consensus 188 ~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 188 KGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred cCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999997 5789999999999999999999998765
No 18
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=3e-24 Score=217.23 Aligned_cols=118 Identities=34% Similarity=0.519 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+.+++++ ++||+|||||++||+||+.+|+++||||||+||||.++.++.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~ 185 (293)
T COG1131 111 EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185 (293)
T ss_pred hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 345678999999999998665555 469999999999999999999999999999999999999999999999998
Q ss_pred C-CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHh
Q 009738 84 G-RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (527)
Q Consensus 84 ~-~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~ 127 (527)
| +||++|+|++ +++..+||+|++|++|++++.|++++....+.
T Consensus 186 g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 186 GGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred CCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 7 7999999996 58999999999999999999999888766544
No 19
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.9e-24 Score=210.05 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++|..+++.++|+.+||.+-. .+-+.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~--~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~ 201 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPE--RRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR 201 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHH--HHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH
Confidence 456788999999999997532 234568899999999999999999999999999999999999999999999999997
Q ss_pred -CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 -~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.|.++|++|||. ..+.++||||+||+.|++++.|+++++.
T Consensus 202 e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 202 EKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred hcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHh
Confidence 499999999996 6899999999999999999999998664
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=6.6e-24 Score=200.87 Aligned_cols=115 Identities=26% Similarity=0.409 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+.++-+.|+.+|+.+.+.++.++ |||||+|||+|||+|+++|+++|.|||+++|||.+++++|+.|++++++
T Consensus 122 k~dk~~Al~aLervgi~~~A~qra~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~ 196 (258)
T COG3638 122 KEDKAQALDALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQE 196 (258)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHH
Confidence 44567788999999999999998875 9999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|.|+|++.|+. +-+.++|||++-|++|+++|+|+++++.+
T Consensus 197 ~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 197 DGITVIVNLHQV-DLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred cCCEEEEEechH-HHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 89999999995 67999999999999999999999987644
No 21
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1e-23 Score=200.96 Aligned_cols=115 Identities=21% Similarity=0.384 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.++++.++++.+||.+.. -+++|.+||||||||++|||||+.+|++|+||||||.||+..+.+|+++|.+++++
T Consensus 116 ~~~~~i~~~L~~VgL~~~~----l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 116 KSQQRIAELLDQVGLPPSF----LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred HHHHHHHHHHHHcCCCHHH----HhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 4556699999999997543 34567789999999999999999999999999999999999999999999999986
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|.|.|+++||. .-+.++|||+++|++|+++..++++++.+
T Consensus 192 ~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 192 GLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred CceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 78999999995 68999999999999999999999987754
No 22
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=2e-23 Score=192.59 Aligned_cols=114 Identities=21% Similarity=0.381 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++|++|+++|+++++... ||||||||++|||||+.+|+.++||||++|+||.+..+|.+.++.|++.|
T Consensus 115 ~~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rg 189 (243)
T COG1137 115 ERKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189 (243)
T ss_pred HHHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCC
Confidence 4556688999999999999998764 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
..|++|-|.-+ |...+|||.+++++|+++.+|+++++.+
T Consensus 190 iGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 190 IGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred ceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 99999999965 7889999999999999999999998753
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=3.8e-23 Score=210.81 Aligned_cols=115 Identities=26% Similarity=0.450 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.++|.+.++++++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~ 187 (306)
T PRK13537 113 AAARALVPPLLEFAKLENKADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR 187 (306)
T ss_pred HHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 4556788899999999988888875 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|+|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 188 g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 188 GKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999996 58999999999999999999999987754
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.90 E-value=3.8e-23 Score=213.17 Aligned_cols=116 Identities=30% Similarity=0.411 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.++++.++++.+||++..|.+. .+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~ 187 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEIN 187 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34567788999999999998877655 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|||+++|++ +.+.++||++++|++|+++..|+++++.
T Consensus 188 ~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 188 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 75 99999999995 6788999999999999999999987653
No 25
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=3.3e-23 Score=202.96 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=110.1
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++|+++++.+.|+.+||+...++.. ++|||||||||.+||||+.+|+|||+|||+|.|||--+.++.+.|.+|
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 468899999999999999998887654 579999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.++ ++|||+++||. +|..++-|||.+|++|+++..|+|++++.
T Consensus 211 q~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 211 QAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 875 89999999995 78999999999999999999999999864
No 26
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.90 E-value=2.6e-23 Score=220.38 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++.++++.++++.+||.+-... +.+|++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~ 202 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR 202 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH
Confidence 57788999999999999876654 668999999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+ |.++|+++||+ ..+.++|||+++|++|+++..|+++++.+
T Consensus 203 e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 203 ELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 4 99999999996 68999999999999999999999998865
No 27
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.9e-23 Score=197.10 Aligned_cols=116 Identities=28% Similarity=0.419 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++..+++.++|+.+||.+.+|++.|+ ||+||||||+|||||+++|++|+||||.+||.+..+.++.+.|+++++
T Consensus 123 e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~ 197 (250)
T COG0411 123 EREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197 (250)
T ss_pred HHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh
Confidence 466778999999999999999999986 999999999999999999999999999999999999999999999998
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+ |.||+++.|+. +.+..+||||++|+.|+++.+|+|+++.+
T Consensus 198 ~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 198 RGGVTILLIEHDM-KLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcEEEEEEecc-HHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 5 79999999995 68999999999999999999999998753
No 28
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.89 E-value=8.5e-23 Score=208.08 Aligned_cols=115 Identities=27% Similarity=0.447 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 99 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 173 (302)
T TIGR01188 99 DEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE 173 (302)
T ss_pred HHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 4456678999999999988887775 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|+|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 174 g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 174 GVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999996 58999999999999999999999887654
No 29
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.4e-22 Score=205.11 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++.++++.++++.+||. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~ 191 (288)
T PRK13643 117 KEKAEKIAAEKLEMVGLADEFWEKSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH 191 (288)
T ss_pred HHHHHHHHHHHHHHcCCChhhccCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 456677899999999995 4555544 5699999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH---HHHhhcCCCCCCC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCPSR 136 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~---~~f~~~g~~~~~~ 136 (527)
++|.|||+++|++ +++.++||++++|++|++++.|++++.. +.+...|+.+|..
T Consensus 192 ~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 192 QSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChH
Confidence 8899999999996 5788999999999999999999998763 3445566666553
No 30
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.89 E-value=1.5e-22 Score=208.97 Aligned_cols=115 Identities=25% Similarity=0.467 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.++|.+..+++++ +||||||||++||++|+.+|++++|||||+|||+.++.++.+.|++++++
T Consensus 147 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~ 221 (340)
T PRK13536 147 REIEAVIPSLLEFARLESKADARVS-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221 (340)
T ss_pred HHHHHHHHHHHHHcCCchhhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3455678899999999988888876 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|+|||+++|+. +++.++||++++|++|++++.|++++...
T Consensus 222 g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 222 GKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999995 68999999999999999999999988754
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-22 Score=199.14 Aligned_cols=113 Identities=26% Similarity=0.449 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+++++ +|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (235)
T cd03261 111 EEIREIVLEKLEAVGLRGAEDLYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185 (235)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4456778899999999887776664 59999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 186 ~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 186 LGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred cCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 89999999996 578899999999999999999987754
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.89 E-value=1.6e-22 Score=210.15 Aligned_cols=116 Identities=23% Similarity=0.382 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..|++++ +|||||||||+|||+|+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 110 ~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 184 (362)
T TIGR03258 110 PKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALH 184 (362)
T ss_pred CHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877664 699999999999999999999999999999999999999999999998
Q ss_pred hC--CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD--GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~--~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|++||++ +++..++|++++|++|+++..|+++++.
T Consensus 185 ~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 185 EELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 86 79999999996 6789999999999999999999998764
No 33
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.8e-22 Score=209.55 Aligned_cols=116 Identities=21% Similarity=0.320 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++..++++++++.+||++..+++.+ +|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~ 181 (356)
T PRK11650 107 PKAEIEERVAEAARILELEPLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLH 181 (356)
T ss_pred CHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877654 699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 182 ~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 182 RRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 76 89999999996 5799999999999999999999998763
No 34
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=1.4e-22 Score=194.42 Aligned_cols=103 Identities=26% Similarity=0.461 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..+. .+|.+|||||||||+|||||+.+|++++.||||..||+.++..+++++++++++
T Consensus 117 ~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~ 192 (226)
T COG1136 117 RRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER 192 (226)
T ss_pred HHHHHHHHHHHhcCChhhhcc----CCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc
Confidence 567788999999999876652 234579999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
|+|+|++||+| ++...|||++.|.+|++
T Consensus 193 g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 193 GKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred CCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 89999999996 58889999999999983
No 35
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.8e-22 Score=201.80 Aligned_cols=115 Identities=23% Similarity=0.407 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~--~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++..++++++++.+||. +..|+++ +.||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|+++
T Consensus 116 ~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 116 EEEIENRVKRAMNIVGLDYEDYKDKSP-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred HHHHHHHHHHHHHHcCCCchhhccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 455667899999999996 5555554 569999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ |+|||+++|++ +++.++|||+++|++|++++.|++++..
T Consensus 191 ~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 191 HKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 875 89999999995 5788899999999999999999988764
No 36
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.8e-22 Score=203.26 Aligned_cols=115 Identities=20% Similarity=0.381 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++..++++++++.+||. +..++++ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 138 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~ 212 (305)
T PRK13651 138 KEEAKKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN 212 (305)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 456677899999999996 5666655 4699999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|.|||+++|++ +++.+++||+++|++|++++.|++++..
T Consensus 213 ~~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 213 KQGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HCCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 8899999999995 5788999999999999999999988754
No 37
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.8e-22 Score=201.38 Aligned_cols=115 Identities=22% Similarity=0.343 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++..++++++++.+||. +..++++ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 118 EEDAKQKAREMIELVGLPEELLARSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 445567899999999996 5566555 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|||+++|++ +++.+++||+++|++|++++.|++++..
T Consensus 193 ~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 193 KEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 75 89999999996 5788999999999999999999988753
No 38
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=4.9e-22 Score=199.70 Aligned_cols=113 Identities=25% Similarity=0.384 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++.++.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (274)
T PRK13647 113 DEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187 (274)
T ss_pred HHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3456778999999999887776654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 188 g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 188 GKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999996 578889999999999999999998653
No 39
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=7.7e-23 Score=190.62 Aligned_cols=116 Identities=27% Similarity=0.419 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++|++.|+.-.|.+--..+..+ ...+|||||+|||+|||+|+.+|+|||||||||+|||.++.+|-++|.+|+ +
T Consensus 120 ~~ldeiVe~sLk~AaLWdEVKDrL~~-sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~ 197 (253)
T COG1117 120 KELDEIVESSLKKAALWDEVKDRLHK-SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-K 197 (253)
T ss_pred HHHHHHHHHHHHHhHhHHHhHHHhhC-CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-h
Confidence 57788999999999987654444433 345799999999999999999999999999999999999999999999998 4
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.-|||+++|.+ ....+..|+..++..|+++++|+++++
T Consensus 198 ~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 198 KYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred ccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 58999999995 689999999999999999999999866
No 40
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.88 E-value=2.8e-22 Score=207.87 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..|++. ++|||||||||+|||+|+.+|+++|||||++|||+.++.++.+.|+++.
T Consensus 107 ~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 107 GRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 34567789999999999998887765 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++|++++|++|++++.|+++++.
T Consensus 182 ~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 182 RRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 75 89999999996 5899999999999999999999998764
No 41
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.88 E-value=3.3e-22 Score=203.84 Aligned_cols=115 Identities=25% Similarity=0.456 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.++|.+..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~ 184 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKADVRVA-----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184 (303)
T ss_pred HHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 3445678889999999988887775 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|.|||+++|++ +++.++||++++|++|++++.|++++..+
T Consensus 185 g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 185 GKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999996 57889999999999999999999887643
No 42
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=2.1e-22 Score=183.16 Aligned_cols=114 Identities=23% Similarity=0.379 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++.++..+||..+.++.-+ +|||||||||++||.|+++-.|++||||+|.|||.-+.++..++.+++++
T Consensus 104 a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred HHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 4567899999999999988877654 69999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.|+++++||| +++.++.|+++++++|+|.+.|+.++..
T Consensus 179 ~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 179 RKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 88999999998 5799999999999999999999988643
No 43
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.7e-22 Score=206.72 Aligned_cols=116 Identities=21% Similarity=0.378 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++. +.|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++.
T Consensus 109 ~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 183 (351)
T PRK11432 109 PKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQ 183 (351)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 34567789999999999998777655 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 184 ~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 184 QQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76 89999999996 5799999999999999999999998764
No 44
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.5e-22 Score=196.60 Aligned_cols=117 Identities=25% Similarity=0.347 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++.+++.+|+++|+.+.|++.++. +|.+|||||||||++||||+.+|++||||||+++||..-+.++.+.|+++.
T Consensus 110 ~~~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~ 184 (345)
T COG1118 110 SEAEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184 (345)
T ss_pred ChhhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHH
Confidence 356888999999999999876654 567899999999999999999999999999999999999999999999999
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++ |.|+++++||+ +++.+++|||++|++|+|...|+++++.+
T Consensus 185 ~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 185 DRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 87 99999999996 68999999999999999999999998753
No 45
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.88 E-value=4.7e-22 Score=206.24 Aligned_cols=115 Identities=21% Similarity=0.284 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.++|++..++++ ++|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 184 (353)
T PRK10851 110 AAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 (353)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 3456778999999999988777665 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|+|+++|++ .++..++|++++|++|++++.|+++++.
T Consensus 185 ~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 185 ELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 6 89999999996 6799999999999999999999998764
No 46
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.88 E-value=4.6e-22 Score=195.41 Aligned_cols=113 Identities=27% Similarity=0.435 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||++..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 192 (236)
T cd03219 118 REARERAEELLERVGLADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192 (236)
T ss_pred HHHHHHHHHHHHHcCccchhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 3445678999999999887776654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 193 ~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 193 GITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 89999999996 578899999999999999999987754
No 47
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.88 E-value=4.6e-22 Score=206.31 Aligned_cols=115 Identities=20% Similarity=0.311 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++..+++.++++.+||++..+++.+ .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.++++++
T Consensus 103 ~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~ 177 (363)
T TIGR01186 103 EQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA 177 (363)
T ss_pred HHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45667889999999999887776654 6999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|||+++|+. +++.+++|++++|++|+++..|++++..
T Consensus 178 ~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 178 TLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 5 89999999995 6789999999999999999999988764
No 48
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.3e-22 Score=193.02 Aligned_cols=112 Identities=26% Similarity=0.409 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 180 (220)
T cd03265 106 AERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180 (220)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh
Confidence 3455678999999999887777665 59999999999999999999999999999999999999999999999886
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
|+|+|+++|++ +++..++|++++|++|+++..|++++
T Consensus 181 ~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 181 FGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 89999999996 57889999999999999999888764
No 49
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=9.5e-22 Score=201.53 Aligned_cols=127 Identities=24% Similarity=0.429 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++..++++++++.+||. +..++.. .+||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++
T Consensus 149 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~ 223 (320)
T PRK13631 149 KSEAKKLAKFYLNKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK 223 (320)
T ss_pred HHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 345567889999999996 4555544 5699999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH---HHHhhcCCCCCC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV---KFFAEAGFPCPS 135 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~---~~f~~~g~~~~~ 135 (527)
++|+|||+++|++ +++.+.+|++++|++|+++..|++++.. +.+...+...|.
T Consensus 224 ~~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 224 ANNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred HCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 8899999999996 5688999999999999999999988653 233444555443
No 50
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.88 E-value=3.7e-22 Score=181.02 Aligned_cols=117 Identities=25% Similarity=0.383 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.|..++++..|.++|+.+.+|. +|..|||||+||++|||||+.+|+++++|||||.|||.-.-++.+.+++|
T Consensus 124 ~~k~ea~e~Ae~~L~kVGi~ek~~~-----YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 124 VSKAEAIERAEKYLAKVGIAEKADA-----YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred CCHHHHHHHHHHHHHHhCchhhhhc-----CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 3678888999999999999887764 45579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++|+|.++++|. +...-+...++++|++|.+-.+|+|+++.
T Consensus 199 AeEgrTMv~VTHE-M~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 199 AEEGRTMVVVTHE-MGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHhCCeEEEEeee-hhHHHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999 46888999999999999999999999764
No 51
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.88 E-value=6.3e-22 Score=203.70 Aligned_cols=118 Identities=19% Similarity=0.345 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++..+++.++++.+||.+..+. . +.++++||||||||++||++|+.+|++|++||||+|||+.++.++++.|+++++
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~ 209 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKR 209 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999753322 2 356788999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|+|+++||. ..+.+++|++++|++|+++..|+++++.
T Consensus 210 ~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 210 EFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6 89999999996 5788899999999999999999988764
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.88 E-value=6.1e-22 Score=203.76 Aligned_cols=116 Identities=22% Similarity=0.379 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++.+++++++++.+||. +..++ ++++||||||||++||++|+.+|++|++||||+|||+.++.++++.|+++
T Consensus 133 ~~~~~~~~~~~~l~~vgl~~~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 133 SRQEVKDRVKAMMLKVGLLPNLINR-----YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred CHHHHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3456677889999999994 34444 45679999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ |.|+|+++|+. ..+.+++|++++|++|+++..|+++++.
T Consensus 208 ~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 208 QREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 875 89999999995 5788899999999999999999987654
No 53
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=7.5e-22 Score=199.70 Aligned_cols=115 Identities=26% Similarity=0.364 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++..++++++++.+||+ +..+++++ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 192 (287)
T PRK13641 118 EDEAKEKALKWLKKVGLSEDLISKSPF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192 (287)
T ss_pred HHHHHHHHHHHHHHcCCChhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 345567889999999997 56676665 599999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|.|||+++|++ +++.++||++++|++|+++..|++++..
T Consensus 193 ~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 193 KAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 7899999999995 5788999999999999999999988653
No 54
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.4e-22 Score=191.95 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03259 105 AEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179 (213)
T ss_pred HHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 3445678899999999887777664 59999999999999999999999999999999999999999999999874
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+|||+++|++ +++.++||++++|++|+++..|
T Consensus 180 ~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 180 LGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 89999999996 5788999999999999998765
No 55
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=9.9e-22 Score=198.43 Aligned_cols=115 Identities=25% Similarity=0.468 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++..++++++++.+||.+..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 115 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~ 189 (283)
T PRK13636 115 EDEVRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189 (283)
T ss_pred HHHHHHHHHHHHHHCCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999887777664 5999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|||+++|++ +++..+|||+++|++|++++.|++++..
T Consensus 190 ~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 190 ELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred hCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 5 89999999996 5688899999999999999999988754
No 56
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7e-22 Score=204.58 Aligned_cols=115 Identities=28% Similarity=0.393 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++..++++++++.+||++..++++. +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~ 188 (343)
T PRK11153 114 KAEIKARVTELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188 (343)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999887776654 6999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 189 ~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 189 ELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 89999999996 5788999999999999999999987653
No 57
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.87 E-value=5.7e-22 Score=208.09 Aligned_cols=112 Identities=26% Similarity=0.416 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+..++++. +||||||||+.|||+|+++|++|+|||||+|||+.++.++++.|++++++|
T Consensus 115 ~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g 189 (402)
T PRK09536 115 TDRAAVERAMERTGVAQFADRPVT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG 189 (402)
T ss_pred HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcC
Confidence 445789999999999988887765 599999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++.++|||+++|++|++++.|+++++
T Consensus 190 ~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 190 KTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999996 678999999999999999999999874
No 58
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.1e-22 Score=190.88 Aligned_cols=104 Identities=26% Similarity=0.381 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++|.++++++.|+.+||....|. +|++|||||||||+|||||+.+|++|+||||++.||+.++.++.+.|.++.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw 177 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLW 177 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHH
Confidence 466778899999999999887664 567899999999999999999999999999999999999999999999987
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
++ ++||+++||+. +|...++|||++|+++
T Consensus 178 ~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 178 EETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 64 89999999996 6889999999999984
No 59
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.2e-21 Score=197.28 Aligned_cols=114 Identities=26% Similarity=0.413 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++..++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13650 114 HEEMKERVNEALELVGMQDFKEREPA-----RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 (279)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 44566789999999999887776654 6999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|||+++|++. ++ ..||++++|++|+++..|++++..
T Consensus 189 ~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 189 DYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 5 999999999964 56 579999999999999999988654
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.87 E-value=8.1e-22 Score=193.16 Aligned_cols=112 Identities=23% Similarity=0.378 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 183 (232)
T cd03218 109 EREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183 (232)
T ss_pred HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 445678899999999887777664 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 184 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 220 (232)
T cd03218 184 IGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEI 220 (232)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHh
Confidence 9999999996 478999999999999999999987754
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.2e-22 Score=194.19 Aligned_cols=111 Identities=27% Similarity=0.405 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
..++++++++.++|.+..++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 195 (241)
T cd03256 121 EKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG 195 (241)
T ss_pred HHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 4567888999999987776655 469999999999999999999999999999999999999999999999864 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 196 ~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 196 ITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999996 578889999999999999999988764
No 62
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.87 E-value=7.7e-22 Score=206.03 Aligned_cols=115 Identities=25% Similarity=0.397 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++..+++++ +|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 107 ~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~ 181 (369)
T PRK11000 107 KEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (369)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556789999999999887777664 6999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 182 ~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 89999999996 5789999999999999999999988764
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.87 E-value=1.1e-21 Score=194.49 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 120 ~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 194 (250)
T PRK11264 120 EATARARELLAKVGLAGKETSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK 194 (250)
T ss_pred HHHHHHHHHHHHcCCcchhhCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 44567889999999987776655 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|+|+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 195 ~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 195 RTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKAL 231 (250)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999996 578899999999999999999988765
No 64
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=8.9e-22 Score=193.89 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+..++++++++.+||++..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 186 (239)
T cd03296 112 EIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL 186 (239)
T ss_pred HHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 345678899999999877776654 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 187 ~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 187 HVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 89999999996 568899999999999999999988754
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=196.66 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+..++++++++.+||.+..++.++ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~ 210 (269)
T cd03294 136 EREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 445678899999999887777665 59999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 211 g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 211 QKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 89999999996 5788999999999999999999887653
No 66
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=1.1e-21 Score=193.40 Aligned_cols=113 Identities=26% Similarity=0.409 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..+++.++++.+||++..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 185 (240)
T PRK09493 111 EEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 (240)
T ss_pred HHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 345567889999999987777665 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+|+++|++ +++.++||++++|++|++++.|++++.
T Consensus 186 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 186 GMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999996 578889999999999999999988765
No 67
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=196.81 Aligned_cols=113 Identities=30% Similarity=0.454 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+++++ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (271)
T PRK13638 111 AEITRRVDEALTLVDAQHFRHQPIQ-----CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185 (271)
T ss_pred HHHHHHHHHHHHHcCCHhHhcCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC
Confidence 3445678889999999887776654 59999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 186 g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 186 GNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 89999999996 578899999999999999999998765
No 68
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=201.65 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++..+++.++++.+||.+ ..++ ++++||||||||++||+||+.+|++|++||||+|||..++.++++.|++++
T Consensus 127 ~~~~~~~~~~~l~~~gL~~~~~~~-----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 127 AAERREKALAMMAKVGLRPEHYDR-----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred HHHHHHHHHHHHHHCCCChHHhcC-----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 3456678999999999963 4444 456799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|+. ..+.+++|++++|++|+++..|+++++.
T Consensus 202 ~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 202 QELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 75 89999999995 5788899999999999999999988764
No 69
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.87 E-value=1e-21 Score=204.94 Aligned_cols=115 Identities=25% Similarity=0.350 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++..+++. ++|||||||||+|||+|+.+|++|||||||+|||+..+..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~ 192 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR 192 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4556778999999999998887765 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|+|+++|++ .++..++|++++|++|+++..|+++++.
T Consensus 193 ~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 193 KLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 5 89999999996 5799999999999999999999988764
No 70
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.1e-21 Score=201.74 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.++++.++++.+||.+..+ .-+.++++|||||||||+||++|+.+|++|++||||+|||+.++.++++.|+++++
T Consensus 124 ~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~ 201 (326)
T PRK11022 124 KKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ 201 (326)
T ss_pred HHHHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456678999999999974221 11235668999999999999999999999999999999999999999999999987
Q ss_pred -CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 -~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.|.|+|+++|+. +.+.+++||+++|++|+++..|+++++.
T Consensus 202 ~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 202 KENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 489999999996 5688899999999999999999988764
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.1e-21 Score=190.75 Aligned_cols=110 Identities=26% Similarity=0.362 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (527)
+..++++++++.+||++..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~ 181 (220)
T cd03293 107 EARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET 181 (220)
T ss_pred HHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 445678899999999887776654 6999999999999999999999999999999999999999999999965 4
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEe--CCeEEEEeChh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK 120 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~--~G~~~~~G~~~ 120 (527)
|+|||+++|++ +++.+++|++++|+ +|+++..++.+
T Consensus 182 ~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 182 GKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 89999999996 46889999999999 79999888754
No 72
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-21 Score=197.49 Aligned_cols=115 Identities=20% Similarity=0.408 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++..++++++++.+||. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~ 192 (286)
T PRK13646 118 LDEVKNYAHRLLMDLGFSRDVMSQSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQ 192 (286)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 445667889999999996 5666554 4699999999999999999999999999999999999999999999998
Q ss_pred h-CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 L-DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~-~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ .|.|||+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 193 ~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 193 TDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6 489999999996 5788999999999999999999987653
No 73
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.87 E-value=1.3e-21 Score=201.15 Aligned_cols=114 Identities=25% Similarity=0.365 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..++++ ++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 75 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 75 AEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 445678899999999988777665 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 150 ~g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 150 LGITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 89999999996 5789999999999999999999988764
No 74
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=8.8e-22 Score=175.62 Aligned_cols=114 Identities=25% Similarity=0.393 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++++...++.++++.+.|.+.+|+ +|-.|||||+|||+|||||+.+|++|++||||+.|||.-..++++.||+|
T Consensus 113 l~~~qa~~~a~ellkrlrl~~~adr-----~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel 187 (242)
T COG4161 113 LSKDQALARAEKLLKRLRLKPYADR-----YPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL 187 (242)
T ss_pred CCHHHHHHHHHHHHHHhcccccccc-----CceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence 4678888999999999999988875 45579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
+..|.|-++++|.- +...+.+.||+.|++|+++..|+.+
T Consensus 188 ~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 188 AETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecchh
Confidence 99999999999995 6788899999999999999999865
No 75
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.87 E-value=1.1e-21 Score=199.84 Aligned_cols=114 Identities=26% Similarity=0.434 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||++..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~- 181 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK- 181 (301)
T ss_pred HHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-
Confidence 4456788999999999988887765 5999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++|||+++|++ +++.++|||+++|++|++++.|+.++...
T Consensus 182 ~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 182 DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 79999999996 57999999999999999999999987654
No 76
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.87 E-value=1e-21 Score=193.84 Aligned_cols=112 Identities=26% Similarity=0.386 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 195 (243)
T TIGR02315 121 EDKERALSALERVGLADKAYQRAD-----QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED 195 (243)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc
Confidence 345678899999999877776554 69999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 196 ~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 196 GITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 89999999996 468899999999999999999987754
No 77
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=1.3e-21 Score=191.22 Aligned_cols=111 Identities=28% Similarity=0.433 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+||.+..+++.. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +
T Consensus 116 ~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~ 191 (227)
T cd03260 116 LDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-Y 191 (227)
T ss_pred HHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-c
Confidence 45678899999999877666530 3579999999999999999999999999999999999999999999999887 9
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 192 tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 192 TIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999996 57888999999999999999998764
No 78
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=1e-21 Score=192.39 Aligned_cols=110 Identities=32% Similarity=0.435 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..++.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 90 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~ 164 (230)
T TIGR01184 90 ERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH 164 (230)
T ss_pred HHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 445678899999999887777664 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
|+|||+++|++ +++.+++|++++|++|+++..|+..
T Consensus 165 ~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 165 RVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCce
Confidence 89999999996 5788999999999999999888654
No 79
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.87 E-value=6.2e-22 Score=200.65 Aligned_cols=117 Identities=23% Similarity=0.387 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++++++|+++.+.++|++..|++. ++|||||||||++||||+.+|+++|||||+|.||+..+.++...|++++
T Consensus 106 ~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 106 PKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred chHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765 5799999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++ |.|+|.+|||. .|+..++||+++|++|++...|++.++.+
T Consensus 181 ~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 181 ERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 76 89999999996 68999999999999999999999998754
No 80
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.87 E-value=1.3e-21 Score=189.13 Aligned_cols=108 Identities=24% Similarity=0.419 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 179 (213)
T cd03301 105 DEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR 179 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4456678899999999887777665 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|.|||+++|++ .++.+++|++++|++|++++.|
T Consensus 180 ~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 180 LGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 89999999996 5788999999999999998875
No 81
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=2.7e-21 Score=194.44 Aligned_cols=114 Identities=27% Similarity=0.451 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..+++.++++.+||++..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (275)
T PRK13639 112 EEVEKRVKEALKAVGMEGFENKPPH-----HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186 (275)
T ss_pred HHHHHHHHHHHHHCCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3455678899999999888777664 59999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|++ +++.++||++++|++|+++..|++++..
T Consensus 187 ~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 187 GITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999996 5788899999999999999999988764
No 82
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.6e-21 Score=191.18 Aligned_cols=112 Identities=28% Similarity=0.406 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+..++++++++.+||.+..++++. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (233)
T cd03258 116 EIEERVLELLELVGLEDKADAYPA-----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190 (233)
T ss_pred HHHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc
Confidence 345678899999999887776654 69999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 191 ~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 191 GLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 89999999996 578899999999999999999987654
No 83
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.87 E-value=1.1e-21 Score=190.07 Aligned_cols=104 Identities=27% Similarity=0.384 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..++.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 187 (216)
T TIGR00960 113 RDANERVSAALEKVGLEGKAHALPM-----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR 187 (216)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 3456788999999999887776654 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
|.|||+++|++ +++.++||++++|++|++
T Consensus 188 ~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 188 GTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999996 578889999999999974
No 84
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.8e-21 Score=195.98 Aligned_cols=114 Identities=28% Similarity=0.428 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..++++. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~ 186 (277)
T PRK13652 112 ETVAHRVSSALHMLGLEELRDRVPH-----HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186 (277)
T ss_pred HHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3455678999999999887777664 69999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|++ +++.+.||++++|++|++++.|++++..
T Consensus 187 ~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 187 YGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred cCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 89999999996 5788999999999999999999988764
No 85
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=1.4e-21 Score=189.73 Aligned_cols=108 Identities=29% Similarity=0.552 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~ 185 (218)
T cd03266 111 DELTARLEELADRLGMEELLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185 (218)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3556788999999999888777665 59999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+|+|+++|++ +++..++|++++|++|+++..|
T Consensus 186 ~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 186 GKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 99999999996 5788999999999999998654
No 86
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-21 Score=203.60 Aligned_cols=116 Identities=22% Similarity=0.321 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.++|.+..++.. ++|||||||||+|||+|+.+|++|||||||+|||+..+.++.+.|+++.
T Consensus 122 ~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 196 (377)
T PRK11607 122 PKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDIL 196 (377)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 34567788999999999988776655 4699999999999999999999999999999999999999999999987
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 197 ~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 197 ERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 64 89999999996 5899999999999999999999998764
No 87
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.9e-21 Score=195.45 Aligned_cols=114 Identities=22% Similarity=0.360 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++..++++++++.+||++..+++++ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 184 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE 184 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34556778999999999988777664 6999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|.|||+++|++. ++ ..+|++++|++|++++.|++++..
T Consensus 185 ~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 185 KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 8999999999975 56 569999999999999999987653
No 88
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-21 Score=200.63 Aligned_cols=116 Identities=19% Similarity=0.276 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.++++.++++.+||.+..+ ..+.++.+|||||||||+||++|+.+|++|++||||+|||+.++.++++.|++++++
T Consensus 131 ~~~~~~~~~L~~~gL~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 131 WRKRRAIELLHRVGIKDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHCCCCChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999975321 123455689999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|+|+++|+. ..+.+++|++++|++|++++.|+++++.
T Consensus 209 g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 89999999995 5788999999999999999999987653
No 89
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.86 E-value=1.9e-21 Score=202.62 Aligned_cols=115 Identities=22% Similarity=0.340 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++..|++.+ +||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 138 ~~~~~~~a~e~le~vgL~~~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 138 EAERRKRVDEQLELVGLAQWADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 45566789999999999888777664 5999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|+|+++|++ +++.+++||+++|++|+++..|++++..
T Consensus 213 ~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 213 KLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 5 89999999996 5789999999999999999999988764
No 90
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.86 E-value=2e-21 Score=194.88 Aligned_cols=112 Identities=18% Similarity=0.333 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.++++.++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 119 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 193 (269)
T PRK11831 119 LLHSTVMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193 (269)
T ss_pred HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 344577889999999887777664 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 194 g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 194 GVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred CcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 89999999995 578899999999999999999988765
No 91
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=1e-21 Score=208.32 Aligned_cols=116 Identities=23% Similarity=0.362 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++.++++.++++..||.+ .+.+++|++||||||||++|||||+.+|++|++|||||.||+..+.++.++|+++++
T Consensus 402 ~~~~~~rv~~ll~~VgL~~----~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~ 477 (539)
T COG1123 402 GAERRARVAELLELVGLPP----EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477 (539)
T ss_pred hHHHHHHHHHHHHHcCCCH----HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH
Confidence 3567778999999999984 245567889999999999999999999999999999999999999999999999998
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|.++++||. ..+.++||||++|++|+++..|+.+++.
T Consensus 478 e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 478 ELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred HhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 7 99999999995 6899999999999999999999888664
No 92
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=1.7e-21 Score=189.35 Aligned_cols=111 Identities=32% Similarity=0.491 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.++|.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 109 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 182 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-G 182 (220)
T ss_pred HHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-C
Confidence 445678899999999887777664 5999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|+|+++|++ +.+.+++|++++|++|+++..|+++++
T Consensus 183 ~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 183 RSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 8999999997 468889999999999999999987653
No 93
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=2.7e-21 Score=189.35 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCCc---ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 6 INDIVEETIIKMGLQ---ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~---~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
..++++++++.++|. +..++++ +.|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 99 ~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~ 173 (230)
T TIGR02770 99 ARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173 (230)
T ss_pred HHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 356788999999997 3445544 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |+|||+++|++ +++..++|++++|++|+++..|++++..
T Consensus 174 ~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 174 LFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 89999999996 5788999999999999999999887653
No 94
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.6e-21 Score=193.31 Aligned_cols=113 Identities=24% Similarity=0.378 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++..++++++++.+||.+ ..++++ +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 193 (280)
T PRK13649 119 EEAEALAREKLALVGISESLFEKNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193 (280)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 345567888999999973 455555 46999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 194 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 194 SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 889999999996 578899999999999999999998765
No 95
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.86 E-value=2.3e-21 Score=177.70 Aligned_cols=111 Identities=28% Similarity=0.390 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++++++|.++|+.+||.+.++. .|.+|||||||||+||||++.+|++|+.||||.+|||..+.++++++.++.
T Consensus 110 ~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 110 PPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred CHHHHHHHHHHHHHHhccchhhhc-----CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 568899999999999999987764 456799999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
+.|.||++.+|+ ..-+..+-.|++.|++|+++....
T Consensus 185 r~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 185 RLGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred hcCcEEEEEecc-HHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999 467788889999999999987653
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=192.61 Aligned_cols=110 Identities=22% Similarity=0.366 Sum_probs=100.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~ 85 (527)
.++++++++.+||.+..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.
T Consensus 131 ~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 205 (255)
T PRK11300 131 LDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNV 205 (255)
T ss_pred HHHHHHHHHhCChhhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCC
Confidence 3567888999999887777665 59999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 206 tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 206 TVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHH
Confidence 999999996 578899999999999999999988764
No 97
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.8e-21 Score=202.77 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~- 82 (527)
++.+++++++++.+||++..++.+ ++||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~ 213 (400)
T PRK10070 139 EERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH
Confidence 455678899999999988777655 46999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.|+|||+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 214 ~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 214 HQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 489999999996 5788999999999999999999887653
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.6e-21 Score=186.78 Aligned_cols=108 Identities=28% Similarity=0.528 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
.+..++++++++.+||++..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~ 177 (210)
T cd03269 103 EEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177 (210)
T ss_pred HHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 3455678999999999887777654 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 178 ~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 178 GKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 89999999996 5688899999999999998754
No 99
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.8e-21 Score=190.56 Aligned_cols=113 Identities=20% Similarity=0.365 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..++++ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (241)
T PRK10895 112 EQREDRANELMEEFHIEHLRDSMG-----QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186 (241)
T ss_pred HHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 345567899999999987766655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|+|+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 187 g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 187 GLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred CCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999996 578899999999999999999988765
No 100
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.86 E-value=3.8e-21 Score=190.31 Aligned_cols=112 Identities=28% Similarity=0.431 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++..++++++++.+||. +..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 189 (247)
T TIGR00972 115 KELDEIVEESLKKAALWDEVKDRLHDSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189 (247)
T ss_pred HHHHHHHHHHHHHcCCCcchhhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 44556788999999997 5555544 56999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++++ .|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 190 ~~~~-~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 190 LKKK-YTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQI 230 (247)
T ss_pred HHhc-CeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9875 8999999996 578899999999999999999988765
No 101
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.86 E-value=4.1e-21 Score=191.23 Aligned_cols=113 Identities=25% Similarity=0.369 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~-~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++.++++.++++.+||.+.. ++.. ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~ 200 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE 200 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34566788999999997653 4443 56999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+|+++|++ .++..+|||+++|++|++++.|++++.
T Consensus 201 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 201 EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 899999999996 578889999999999999999987754
No 102
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.4e-21 Score=188.91 Aligned_cols=112 Identities=18% Similarity=0.301 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
.+++++++++.+||++..++.+. .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 106 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 106 QREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred HHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999887777664 59999999999999999999999999999999999999999999999764 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 181 ~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 181 LTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999996 5788999999999999999999877653
No 103
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.4e-21 Score=190.06 Aligned_cols=113 Identities=24% Similarity=0.452 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHcCCcc--cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQA--CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~--~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++..++++++++.+||.+ ..++++ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~ 182 (242)
T cd03295 108 EKIRERADELLALVGLDPAEFADRYP-----HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182 (242)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH
Confidence 344567889999999985 555554 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++ |+|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 183 ~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 183 QELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred HHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 75 89999999996 478899999999999999999987755
No 104
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.86 E-value=2.8e-21 Score=200.96 Aligned_cols=113 Identities=25% Similarity=0.391 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..++++. +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 107 ~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 107 ERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 345678999999999888777664 59999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 182 g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 182 GIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 89999999996 5788999999999999999999988654
No 105
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.86 E-value=3e-21 Score=188.18 Aligned_cols=110 Identities=27% Similarity=0.471 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+||++..+++++ +||||||||++||++|+.+|+++++||||+|||+.++..+.+.|++++++|+
T Consensus 90 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~ 164 (223)
T TIGR03771 90 DFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164 (223)
T ss_pred HHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 34578899999999877776654 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +++.+++|+++++ +|++++.|++++.
T Consensus 165 tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~ 199 (223)
T TIGR03771 165 AILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQL 199 (223)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHh
Confidence 999999996 4789999999999 8999999988765
No 106
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=2.6e-21 Score=186.06 Aligned_cols=101 Identities=32% Similarity=0.477 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||.+..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+
T Consensus 105 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 105 EQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAV 179 (205)
T ss_pred HHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 578899999999887776654 699999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEE
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETI 114 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~ 114 (527)
|+++|++ +++.+++|++++|++|+++
T Consensus 180 i~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 180 IVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999996 5688899999999999874
No 107
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=3.1e-21 Score=186.77 Aligned_cols=106 Identities=31% Similarity=0.439 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
.+++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 108 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (214)
T cd03297 108 DRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182 (214)
T ss_pred HHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 44678899999999877776554 69999999999999999999999999999999999999999999999876 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 183 IPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999996 5788999999999999998765
No 108
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.86 E-value=4e-21 Score=189.50 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..++++++++.+||. +..+++++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 193 (243)
T TIGR01978 118 DFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREP 193 (243)
T ss_pred HHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 3456788999999997 45555443 149999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhh-cCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~-~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|||+++|++ +++... +|++++|++|++++.|++++..
T Consensus 194 ~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 194 DRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 89999999996 467777 8999999999999999887543
No 109
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=6.1e-21 Score=191.32 Aligned_cols=113 Identities=21% Similarity=0.356 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+|+.+..++.+ ++||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 191 (269)
T PRK13648 117 DEMHRRVSEALKQVDMLERADYEP-----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE 191 (269)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999988777655 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++. ++.. +|++++|++|++++.|++++..
T Consensus 192 ~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 192 HNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred cCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 899999999975 5655 9999999999999999987653
No 110
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.8e-21 Score=192.38 Aligned_cols=114 Identities=22% Similarity=0.368 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++.+++++++++.+||++..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~ 188 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLNREPH-----RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE 188 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556778999999999988777665 5999999999999999999999999999999999999999999999988
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|||+++|++. ++. .+|++++|++|++++.|++++..
T Consensus 189 ~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 189 QKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred cCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 6 899999999975 565 59999999999999999987654
No 111
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.7e-21 Score=194.01 Aligned_cols=114 Identities=23% Similarity=0.377 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 118 ~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (280)
T PRK13633 118 PEEIRERVDESLKKVGMYEYRRHAPH-----LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192 (280)
T ss_pred HHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999988877664 6999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|||+++|++. ++.. +|++++|++|+++..|++++..
T Consensus 193 ~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 193 KYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred hcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 4 999999999975 5655 9999999999999999988764
No 112
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.8e-21 Score=190.12 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l-~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
..++++++++.+ ++.+..++++ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (237)
T PRK11614 113 FQERIKWVYELFPRLHERRIQRA-----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHhCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCC
Confidence 345677788888 5776666554 4699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|+++|++ +++.+++|++++|++|++++.|+++++.
T Consensus 188 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 188 MTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 9999999996 5789999999999999999999987653
No 113
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=3.5e-21 Score=191.50 Aligned_cols=111 Identities=23% Similarity=0.401 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
..++++++++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 115 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~ 189 (255)
T PRK11231 115 DNARVNQAMEQTRINHLADRRLT-----DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGK 189 (255)
T ss_pred HHHHHHHHHHHcCCHHHHcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 45678899999999887777654 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 190 tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 190 TVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred EEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999996 578999999999999999999987764
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.86 E-value=2.6e-21 Score=186.51 Aligned_cols=105 Identities=30% Similarity=0.476 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.++|++..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 104 KKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178 (208)
T ss_pred HHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 4568889999999888777664 59999999999999999999999999999999999999999999999888899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+|+++|++ +++.+++|++++|++|++++.|
T Consensus 179 ii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 179 VLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999996 5788899999999999998765
No 115
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.86 E-value=3.1e-21 Score=186.67 Aligned_cols=106 Identities=26% Similarity=0.501 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||++..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (213)
T cd03235 108 ADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182 (213)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 345678899999999877776654 599999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+|+|+++|++ +++.+++|++++|++| +++.|
T Consensus 183 ~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 183 MTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999996 5788999999999886 55543
No 116
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.7e-21 Score=189.04 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..+++++.++.+||.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (242)
T PRK11124 117 QALARAEKLLERLRLKPYADRFPL-----HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETG 191 (242)
T ss_pred HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence 345678899999999877776654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
+|+|+++|++ .++.+++|++++|++|++++.|++++
T Consensus 192 ~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 192 ITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999996 57888999999999999999998764
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.86 E-value=4.1e-21 Score=189.42 Aligned_cols=111 Identities=28% Similarity=0.409 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+|+++..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~ 192 (242)
T TIGR03411 119 EEKDRIEEVLETIGLADEADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-K 192 (242)
T ss_pred HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-C
Confidence 345678999999999887776665 5999999999999999999999999999999999999999999999976 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 193 ~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 193 HSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQV 229 (242)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHH
Confidence 8999999996 578899999999999999999987754
No 118
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.86 E-value=4.4e-21 Score=191.93 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.+++++++++.+||. +..++.+ ++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 125 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~ 199 (265)
T TIGR02769 125 EQKARIAELLDMVGLRSEDADKLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA 199 (265)
T ss_pred HHHHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4456788999999995 5666655 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|||+++|++ +.+.+++|++++|++|++++.|++++..
T Consensus 200 ~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 200 FGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred cCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 89999999996 5788899999999999999999987654
No 119
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.86 E-value=2.4e-21 Score=195.04 Aligned_cols=118 Identities=23% Similarity=0.385 Sum_probs=108.3
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.+|++++|.+.|++.||.+. ..+++|+++|||||||++||||++.+|++++||||||.||-.-+.+++++|++|.
T Consensus 398 s~~eR~~rv~~aL~EVGLDp~----~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ 473 (534)
T COG4172 398 SAAERDQRVIEALEEVGLDPA----TRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473 (534)
T ss_pred CHHHHHHHHHHHHHHcCCChh----HhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHH
Confidence 678999999999999999753 3456788999999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
++ |.+-++++||. ..+..+||+|++|.+|+|+.+|+++++.+
T Consensus 474 ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 474 QKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 75 88999999995 58999999999999999999999997753
No 120
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.86 E-value=4.9e-21 Score=186.86 Aligned_cols=108 Identities=29% Similarity=0.365 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..++.++ +||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~ 191 (224)
T cd03220 117 KEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191 (224)
T ss_pred HHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 3445678889999999888877765 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+|||+++|++ +++.+++|++++|++|+++..|
T Consensus 192 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 192 GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 89999999996 5788899999999999998765
No 121
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.9e-21 Score=199.72 Aligned_cols=111 Identities=24% Similarity=0.407 Sum_probs=102.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~ 85 (527)
.++++++++.+||++..+++++ +||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |.
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~ 180 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINI 180 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 4678899999999887777654 69999999999999999999999999999999999999999999999876 89
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 181 tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 181 PILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred eEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999996 5789999999999999999999988764
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=3.4e-21 Score=187.45 Aligned_cols=111 Identities=21% Similarity=0.334 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHc-CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKM-GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l-~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
..++++++++.+ ++.+..++++. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 108 ~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 182 (222)
T cd03224 108 RKARLERVYELFPRLKERRKQLAG-----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEG 182 (222)
T ss_pred HHHHHHHHHHHHHhhhhhhhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 345677788888 57766666554 699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 183 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 183 VTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999996 578899999999999999999987654
No 123
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.86 E-value=1.2e-21 Score=199.64 Aligned_cols=115 Identities=27% Similarity=0.418 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++++++|++.++.++|++.++++. .+|||||||||++||||+.+|++||||||.|.||..-+.++...++++.+
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~ 184 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHH
Confidence 4568899999999999998777655 56999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|.|++|||. +|...++|||++|++|++...|+|+++.
T Consensus 185 ~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 185 ELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred hcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 5 99999999995 6899999999999999999999999874
No 124
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.86 E-value=5.8e-21 Score=187.73 Aligned_cols=112 Identities=28% Similarity=0.466 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (527)
+..++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 108 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 182 (236)
T TIGR03864 108 EARERIAALLARLGLAERADDKVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ 182 (236)
T ss_pred HHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 445678899999999887777665 5999999999999999999999999999999999999999999999985 5
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|+|+++|++. ++. .+|++++|++|+++..|++++..
T Consensus 183 ~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 183 GLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred CCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 899999999974 555 49999999999999999887654
No 125
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=5.6e-21 Score=193.55 Aligned_cols=113 Identities=21% Similarity=0.344 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++..++++++++.++|. +..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 124 ~~~~~~~~~ll~~~~L~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 198 (289)
T PRK13645 124 QEAYKKVPELLKLVQLPEDYVKRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNK 198 (289)
T ss_pred HHHHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34456788899999994 5666555 46999999999999999999999999999999999999999999999986
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+ |+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 199 ~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 199 EYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred hcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 4 89999999996 578899999999999999999988765
No 126
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.1e-21 Score=185.50 Aligned_cols=107 Identities=29% Similarity=0.514 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 178 (211)
T cd03264 105 KEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE- 178 (211)
T ss_pred HHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-
Confidence 3445678899999999887776654 5999999999999999999999999999999999999999999999986
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+.|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 179 ~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 179 DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 48999999996 4688899999999999998764
No 127
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=2.6e-21 Score=183.60 Aligned_cols=122 Identities=25% Similarity=0.461 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
|+++|..++++.+|+.+++......++. +||.|++|++.+..+++++|++++||||+|||||.+.+.+.+.+.++
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~l 176 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHH
Confidence 6788999999999999999988877774 69999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhh
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE 128 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~ 128 (527)
+++|.|||+++|. ++.+.++||++++|++|+.|.+|+.+++..-|..
T Consensus 177 k~~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~Gk 223 (300)
T COG4152 177 KEEGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGK 223 (300)
T ss_pred HhcCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhcCC
Confidence 9999999999999 5789999999999999999999999998875543
No 128
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.85 E-value=3.8e-21 Score=187.35 Aligned_cols=107 Identities=30% Similarity=0.440 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+++.++++.+||++..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 103 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 103 SRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITV 177 (223)
T ss_pred HHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 467889999999987777654 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
|+++|++ +++.+.+|++++|++|+++..|++.
T Consensus 178 ii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 178 ILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999996 5788999999999999999999875
No 129
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=4.6e-21 Score=185.14 Aligned_cols=107 Identities=26% Similarity=0.403 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..++.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 178 (211)
T cd03298 104 EDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET 178 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 345678999999999887776654 69999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|.|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 179 ~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 179 KMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 89999999996 5788999999999999998654
No 130
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.85 E-value=4.9e-21 Score=191.22 Aligned_cols=111 Identities=26% Similarity=0.473 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 128 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 202 (262)
T PRK09984 128 EQKQRALQALTRVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202 (262)
T ss_pred HHHHHHHHHHHHcCCHHHHhCCcc-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc
Confidence 345678999999999887777665 59999999999999999999999999999999999999999999999864
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
|.|+|+++|++ +++.+++|++++|++|++++.|++++
T Consensus 203 g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 203 GITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 89999999996 56889999999999999999998765
No 131
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-21 Score=189.49 Aligned_cols=111 Identities=23% Similarity=0.364 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+.+++++++++.+|+. +..+++ ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 126 ~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 126 DLDGVVENALRSAALWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHHHHHHHHcCCCcchhhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 3456788899999984 334444 4569999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++ +.|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 201 ~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 201 KK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred hh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 65 79999999996 578899999999999999999988765
No 132
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=6.2e-21 Score=189.87 Aligned_cols=111 Identities=23% Similarity=0.438 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
..+++.++++.++|++..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 114 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (256)
T TIGR03873 114 DAAVVDRALARTELSHLADRDMS-----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188 (256)
T ss_pred HHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 34578899999999887777665 5999999999999999999999999999999999999999999999988789
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 189 tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 189 TVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 999999996 578899999999999999999987764
No 133
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=6.6e-21 Score=189.90 Aligned_cols=112 Identities=26% Similarity=0.377 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~------~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
..++++++++.+||.+..++.++ .||||||||++||++|+ .+|++++|||||+|||+.++..+.+.|++
T Consensus 111 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 111 DDALVAAALAQVDLAHLAGRDYP-----QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred HHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 45678899999999887777665 59999999999999999 59999999999999999999999999999
Q ss_pred HH-hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IA-LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~-~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ ++|+|||+++|++ +++.++||++++|++|+++..|++++..
T Consensus 186 ~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 186 LAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred HHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 98 6789999999996 5788899999999999999999877653
No 134
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.85 E-value=6e-21 Score=184.29 Aligned_cols=102 Identities=32% Similarity=0.541 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 110 EIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred HHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 345678899999999877776654 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+|+|+++|++ +++..+||++++|++|+
T Consensus 185 ~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 185 KTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999996 57888999999999985
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=8e-21 Score=188.60 Aligned_cols=113 Identities=22% Similarity=0.300 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+|+.+..++.. +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~ 195 (252)
T TIGR03005 121 AEAEKRAMELLDMVGLADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195 (252)
T ss_pred HHHHHHHHHHHHHcCChhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 344567889999999987776655 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|+|+++|++ +++.+++|++++|++|++++.|+.++.
T Consensus 196 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 196 HDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999996 578899999999999999999987754
No 136
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=7.5e-21 Score=190.24 Aligned_cols=112 Identities=21% Similarity=0.382 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
..++++++++.+||++..++.+. .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~ 194 (265)
T PRK10253 120 DEEAVTKAMQATGITHLADQSVD-----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKG 194 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCcc-----cCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 34578899999999877776654 69999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 195 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 195 YTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999996 5799999999999999999999987653
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=6.5e-21 Score=190.68 Aligned_cols=111 Identities=31% Similarity=0.411 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
.+++++++++.++|++..+++++ .||||||||++||++|+.+|+++||||||+|||+.++..+.+.|++++++ |
T Consensus 124 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~ 198 (265)
T PRK10575 124 DREKVEEAISLVGLKPLAHRLVD-----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 (265)
T ss_pred HHHHHHHHHHHcCCHHHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 45678899999999887777665 59999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 199 ~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 199 LTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999996 578899999999999999999987754
No 138
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=6.1e-21 Score=184.57 Aligned_cols=104 Identities=28% Similarity=0.421 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||++..++.++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 185 (214)
T cd03292 111 REIRKRVPAALELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA 185 (214)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 3455678899999999887776654 69999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
|.|+|+++|++ .++.+++|++++|++|++
T Consensus 186 ~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 186 GTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999996 578889999999999974
No 139
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=9.1e-21 Score=191.30 Aligned_cols=114 Identities=22% Similarity=0.394 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++..++++++++.+||++..++++ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 191 (282)
T PRK13640 117 RPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191 (282)
T ss_pred HHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 3455678899999999988777665 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|||+++|++. ++ ..||++++|++|+++..|++++..
T Consensus 192 ~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 192 KNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred hcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 5 899999999975 45 579999999999999999987654
No 140
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.85 E-value=8e-21 Score=185.53 Aligned_cols=104 Identities=47% Similarity=0.779 Sum_probs=94.1
Q ss_pred HHHH-HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 9 IVEE-TIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 9 ~v~~-~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++ .++.+++++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 122 ~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~ti 196 (226)
T cd03234 122 RVEDVLLRDLALTRIGGNLV-----KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196 (226)
T ss_pred HHHHHHHHhhcchhhhcccc-----cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 4555 888999987766655 4699999999999999999999999999999999999999999999998888999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+++|++.+++.+++|++++|++|++++.|
T Consensus 197 ii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 197 ILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred EEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999756799999999999999998765
No 141
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.85 E-value=9.5e-21 Score=188.72 Aligned_cols=112 Identities=23% Similarity=0.383 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.++++.++++.+++.+ ..++.+ ..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 126 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 200 (258)
T PRK11701 126 DIRATAGDWLERVEIDAARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200 (258)
T ss_pred HHHHHHHHHHHHcCCChhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh
Confidence 34567888999999974 555554 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +.+.+++|++++|++|++++.|++++.
T Consensus 201 ~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 201 LGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 89999999996 578889999999999999999988765
No 142
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.85 E-value=9.7e-21 Score=187.60 Aligned_cols=112 Identities=26% Similarity=0.366 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT-------QPTVLLLDEPTSGLDSASAFFVIQVL 77 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~-------~p~llllDEPtsgLD~~~~~~i~~~l 77 (527)
+..++++++++.+||.+..++.++ .||||||||++||++|+. +|++++|||||+|||+.++..+.+.|
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L 176 (248)
T PRK03695 102 AVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLL 176 (248)
T ss_pred HHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 445678999999999877776654 599999999999999998 67999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 78 KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 78 ~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++++++|.|+|+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 177 ~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 177 SELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred HHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99988899999999996 578899999999999999999987754
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.85 E-value=8.5e-21 Score=190.07 Aligned_cols=112 Identities=20% Similarity=0.304 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..++++++++.+||. +..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (267)
T PRK15112 124 QREKQIIETLRQVGLLPDHASYYP-----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK 198 (267)
T ss_pred HHHHHHHHHHHHcCCChHHHhcCc-----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 4456788999999994 5555544 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +++..+||++++|++|+++..|++++.
T Consensus 199 ~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 199 QGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 89999999996 578889999999999999999987754
No 144
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.85 E-value=6.8e-21 Score=184.30 Aligned_cols=102 Identities=28% Similarity=0.453 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+..++.+. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 113 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 187 (214)
T TIGR02673 113 EIQRRVGAALRQVGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187 (214)
T ss_pred HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 445678899999999877666554 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+|+|+++|++ +++.++||++++|++|+
T Consensus 188 ~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 188 TTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred CEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 9999999996 57888999999999985
No 145
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.2e-20 Score=185.55 Aligned_cols=113 Identities=29% Similarity=0.405 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
.+..+++.++++.+||.+..++.+. .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~ 178 (235)
T cd03299 104 KEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKE 178 (235)
T ss_pred HHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4455678899999999888877664 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|+|+++|++ .++.+++|++++|++|+++..|+.++.
T Consensus 179 ~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 179 FGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred cCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 89999999996 568889999999999999999987654
No 146
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.85 E-value=9.2e-21 Score=186.37 Aligned_cols=108 Identities=26% Similarity=0.405 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 202 (236)
T cd03267 128 ARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202 (236)
T ss_pred HHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 3455678889999999988887765 59999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+.|||+++|++ +++.+++|++++|++|++++.|
T Consensus 203 ~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 203 RGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 88999999996 4788999999999999998764
No 147
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=187.72 Aligned_cols=112 Identities=23% Similarity=0.304 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+.++++++.++.+++. +..++. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 196 (254)
T PRK14273 122 KLDEIVEQSLKKSALWNEVKDKLNTN-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196 (254)
T ss_pred HHHHHHHHHHHHhCCchhhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 4456788899999873 334444 4579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ +.|+|+++|++ +++.+++||+++|++|+++..|++++..
T Consensus 197 ~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 197 KE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred hc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 64 78999999996 4788999999999999999999987653
No 148
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=187.05 Aligned_cols=115 Identities=27% Similarity=0.359 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +++
T Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~ 196 (250)
T PRK14245 119 IRQRVEETLKGAALWDEVKDKL-KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDY 196 (250)
T ss_pred HHHHHHHHHHHcCCCcchhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence 4567889999999864321111 22345799999999999999999999999999999999999999999999995 478
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|||+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 197 tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 197 TIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred eEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999996 4788999999999999999999988664
No 149
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.3e-20 Score=184.89 Aligned_cols=109 Identities=25% Similarity=0.339 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~- 82 (527)
++.+++++++++.+||++..++.+ +.||||||||++||++++.+|+++||||||+|||+.++..+.+.|+++++
T Consensus 120 ~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 194 (233)
T PRK11629 120 AEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194 (233)
T ss_pred HHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 445567899999999987776655 46999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeCh
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~ 119 (527)
+|+|||+++|++. ++.. +|++++|++|+++..|+.
T Consensus 195 ~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 195 QGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 5899999999974 5665 589999999999988763
No 150
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.85 E-value=7e-21 Score=184.77 Aligned_cols=102 Identities=26% Similarity=0.441 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (527)
+.+++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~ 190 (218)
T cd03255 116 ERRERAEELLERVGLGDRLNHYPS-----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA 190 (218)
T ss_pred HHHHHHHHHHHHcCCchhhhcChh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 345678899999999887776654 5999999999999999999999999999999999999999999999987 5
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
|+|||+++|++. ++. .||++++|++|++
T Consensus 191 ~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 191 GTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred CCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 899999999974 565 8999999999974
No 151
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.85 E-value=1.1e-20 Score=182.83 Aligned_cols=107 Identities=20% Similarity=0.319 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
.+++++++++.+||++..++.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 179 (213)
T TIGR01277 105 QQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQ 179 (213)
T ss_pred HHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 3457888999999987777655 469999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
.|+|+++|++ .++.+++|++++|++|+++..|+
T Consensus 180 ~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 180 RTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999996 57788999999999999998875
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=9e-21 Score=206.82 Aligned_cols=112 Identities=19% Similarity=0.376 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|
T Consensus 121 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 195 (510)
T PRK09700 121 EMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 (510)
T ss_pred HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 455788999999999887777665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++..+||++++|++|++++.|++++.
T Consensus 196 ~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 196 TAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 9999999995 578899999999999999999998764
No 153
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.85 E-value=1.3e-20 Score=187.08 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
.+++++++++.+|+. ...++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~ 198 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL 198 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 456788999999996 3556554 469999999999999999999999999999999999999999999998764
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 199 ~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 199 GLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHH
Confidence 89999999996 578889999999999999999987755
No 154
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=188.95 Aligned_cols=113 Identities=21% Similarity=0.405 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 117 KKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT 191 (271)
T ss_pred HHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 3455678899999999888777664 59999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|+|+++|++. ++. .+|++++|++|+++..|++++..
T Consensus 192 ~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 192 RKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred cCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 589999999975 454 79999999999999999887653
No 155
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.84 E-value=2.1e-20 Score=185.47 Aligned_cols=111 Identities=27% Similarity=0.400 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.++++++++.+||. +..++.++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 127 ~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~ 202 (252)
T CHL00131 127 LEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSEN 202 (252)
T ss_pred HHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCC
Confidence 45678899999996 34555443 24999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCChhHHHhh-cCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~-~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++|++ +.+... +|++++|++|++++.|+++.+
T Consensus 203 tii~~tH~~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 203 SIILITHYQ-RLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEecCH-HHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999996 456665 899999999999999988743
No 156
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.84 E-value=1.2e-20 Score=182.33 Aligned_cols=103 Identities=28% Similarity=0.425 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+..++++. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|
T Consensus 111 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 185 (213)
T cd03262 111 EAEERALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 185 (213)
T ss_pred HHHHHHHHHHHHcCCHhHhhhCcc-----ccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcC
Confidence 445678899999999887776654 699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
+|+|+++|++ +++.+++|++++|++|++
T Consensus 186 ~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 186 MTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999996 578899999999999974
No 157
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=1.6e-20 Score=182.88 Aligned_cols=105 Identities=29% Similarity=0.370 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.++|.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 186 (222)
T PRK10908 112 DDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186 (222)
T ss_pred HHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC
Confidence 344567889999999988776655 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~ 114 (527)
|.|+|+++|++ +++..++|++++|++|+++
T Consensus 187 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 187 GVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 89999999996 5788899999999999975
No 158
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.84 E-value=1.3e-20 Score=187.41 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~ 85 (527)
+++++++++.+||.+..++.+ ..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++ +|.
T Consensus 111 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~ 185 (257)
T PRK11247 111 RDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185 (257)
T ss_pred HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 457889999999988776665 46999999999999999999999999999999999999999999999865 489
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
|+|+++|++ +++.+++|++++|++|++++.|+.+
T Consensus 186 tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 186 TVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 999999996 4688899999999999999887654
No 159
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=185.88 Aligned_cols=117 Identities=23% Similarity=0.311 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+.. -+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~- 194 (250)
T PRK14247 117 KELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK- 194 (250)
T ss_pred HHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-
Confidence 34456788999999986421111 1223457999999999999999999999999999999999999999999999965
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 195 ~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 195 DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 79999999996 4788899999999999999999987653
No 160
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=199.12 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.++|.+..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~ 192 (549)
T PRK13545 118 EKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQ 192 (549)
T ss_pred HHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 4455677889999999888777664 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|.|||+++|++ +++.++||++++|++|+++..|+++++.+
T Consensus 193 G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 193 GKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999996 57889999999999999999999887754
No 161
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.9e-20 Score=186.28 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~- 82 (527)
++..++++++++.+||.+..+++++ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~ 177 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE 177 (255)
T ss_pred HHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 3445678999999999877776554 6999999999999999999999999999999999999999999999865
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEe--CCeEEEEeChh
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAK 120 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~--~G~~~~~G~~~ 120 (527)
+|+|+|+++|++ +++..+||++++|+ +|+++..++.+
T Consensus 178 ~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 178 TGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 589999999996 57889999999998 59999887654
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.1e-20 Score=183.28 Aligned_cols=113 Identities=26% Similarity=0.377 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 105 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~ 179 (232)
T cd03300 105 AEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKE 179 (232)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 344567889999999988777665 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ .++.+++|++++|++|++++.|+.++.
T Consensus 180 ~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 180 LGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 89999999996 568899999999999999999887654
No 163
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=188.51 Aligned_cols=110 Identities=25% Similarity=0.423 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+||.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+
T Consensus 119 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~ 193 (272)
T PRK15056 119 DRQIVTAALARVDMVEFRHRQIG-----ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK 193 (272)
T ss_pred HHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCC
Confidence 34567889999999988877765 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++|++ +++.+++|+++++ +|+++..|++++.
T Consensus 194 tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 194 TMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999996 5788999999877 8999999988764
No 164
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=186.16 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+...+.. +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 198 (253)
T PRK14242 121 YLAERVERSLRHAALWDEVKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-R 198 (253)
T ss_pred HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 34567888999999854221111 223457999999999999999999999999999999999999999999999954 7
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 199 ~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 199 YTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred CeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999996 578899999999999999999987754
No 165
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.84 E-value=1.9e-22 Score=192.65 Aligned_cols=208 Identities=23% Similarity=0.329 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHh-hhHHHHHHHH
Q 009738 225 KQLCILSHRSFLNMLRDMGYY-WLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEH 302 (527)
Q Consensus 225 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~f~~er 302 (527)
+|++.+++|+++..+|||.+. ...++..++.++++|.+|.+++++++++ ++.+.+++......+... +.......||
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 8999999999999999999998555555 677766666555554333 3347788999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 009738 303 KASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPN 382 (527)
Q Consensus 303 ~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~ 382 (527)
..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +++.+++.+++...+..+++.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999887 66667777777777788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhh
Q 009738 383 VLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDM 437 (527)
Q Consensus 383 ~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef 437 (527)
...+..+.+.+..++++++|.+.+.+.+|. |++| +.|+||++|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~-~~~~-i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS-WLRW-ISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH-HHHH-HHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999996 4788 9999999999999998875
No 166
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2.1e-20 Score=188.23 Aligned_cols=113 Identities=22% Similarity=0.315 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||++..++++ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 189 (277)
T PRK13642 115 EEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEK 189 (277)
T ss_pred HHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 345567899999999988777665 469999999999999999999999999999999999999999999999876
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|++. ++. .+|++++|++|+++..|++++..
T Consensus 190 ~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 190 YQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred cCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 899999999964 455 59999999999999999987653
No 167
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.84 E-value=2.1e-20 Score=185.79 Aligned_cols=110 Identities=21% Similarity=0.336 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 8 DIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~---~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+++.++++.++|.+ ..++.+ ++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~ 190 (254)
T PRK10418 116 ATLTAALEAVGLENAARVLKLYP-----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190 (254)
T ss_pred HHHHHHHHHcCCCChhhhhhcCC-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 57888999999976 344444 569999999999999999999999999999999999999999999999775
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 191 g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 191 ALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred CcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 89999999996 5688899999999999999999987653
No 168
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.4e-20 Score=205.08 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..++++++++.++|. +..+++++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 380 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 454 (506)
T PRK13549 380 AELKTILESIQRLKVKTASPELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454 (506)
T ss_pred HHHHHHHHHHHhcCccCCCcccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC
Confidence 3446789999999996 56677665 59999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.++||++++|++|+++..|+++++
T Consensus 455 g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 455 GVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999996 578999999999999999999987754
No 169
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2e-20 Score=184.58 Aligned_cols=110 Identities=27% Similarity=0.344 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
.++++++++.+||+ +..++.. ..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 108 ~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g 182 (241)
T PRK14250 108 NVDVEYYLSIVGLNKEYATRDV-----KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMN 182 (241)
T ss_pred HHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 35678899999996 4555544 469999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 183 ~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (241)
T PRK14250 183 LTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDF 219 (241)
T ss_pred CEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999996 578889999999999999999988765
No 170
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.84 E-value=1.6e-20 Score=205.80 Aligned_cols=115 Identities=22% Similarity=0.351 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~---~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
..+..++++++++.+||.+ ..++++ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++
T Consensus 127 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 201 (529)
T PRK15134 127 REAARGEILNCLDRVGIRQAAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE 201 (529)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 3455678899999999975 245555 46999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++++ |.|||+++|++ +.+..+|||+++|++|++++.|+++++.
T Consensus 202 l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 202 LQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred HHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9876 89999999996 5788899999999999999999887653
No 171
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.4e-20 Score=186.07 Aligned_cols=113 Identities=28% Similarity=0.329 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++.+++++++++.+++.+ ..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 127 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 201 (260)
T PRK10744 127 AEMDERVEWALTKAALWNEVKDKLHQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201 (260)
T ss_pred HHHHHHHHHHHHHcCCChhhHHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 345567889999999843 33433 456999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ +.|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 202 ~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 202 LKQ-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred Hhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 964 68999999996 5788999999999999999999887653
No 172
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.5e-20 Score=204.86 Aligned_cols=112 Identities=17% Similarity=0.303 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+..+++++ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 193 (506)
T PRK13549 119 AMYLRAQKLLAQLKLDINPATPVG-----NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHG 193 (506)
T ss_pred HHHHHHHHHHHHcCCCCCcccchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 445678999999999887777665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ .++.++||++++|++|++++.|++++.
T Consensus 194 ~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 194 IACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999996 578899999999999999999988764
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=204.49 Aligned_cols=112 Identities=20% Similarity=0.374 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||++..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~ 191 (501)
T PRK10762 117 KMYAEADKLLARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191 (501)
T ss_pred HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCC
Confidence 445678999999999988777665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 192 ~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 192 RGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999996 578899999999999999999988754
No 174
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.84 E-value=3.1e-20 Score=183.82 Aligned_cols=112 Identities=27% Similarity=0.361 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
..+++++.++.++|. +..++.+. ++||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~ 195 (248)
T PRK09580 120 FQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGK 195 (248)
T ss_pred HHHHHHHHHHHcCCChhhcccCCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCC
Confidence 345677888999984 34444332 2699999999999999999999999999999999999999999999998888
Q ss_pred CEEEEEecCChhHHHhh-cCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~-~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 196 ~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 196 RSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred CEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 99999999964 56666 899999999999999988754
No 175
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=1.8e-20 Score=204.97 Aligned_cols=116 Identities=27% Similarity=0.307 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~- 82 (527)
++.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 217 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA 217 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 4556789999999999887776654 5999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF 125 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~ 125 (527)
.|.|||+++|++ ..+.++||++++|++|++++.|++++..+.
T Consensus 218 ~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 218 SGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred cCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 489999999996 568889999999999999999988776543
No 176
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.84 E-value=2e-20 Score=182.74 Aligned_cols=101 Identities=22% Similarity=0.367 Sum_probs=90.7
Q ss_pred HHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 009738 11 EETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV 88 (527)
Q Consensus 11 ~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi 88 (527)
+++++.++|. +..++.+ ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 200 (228)
T cd03257 126 LLLLVGVGLPEEVLNRYP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200 (228)
T ss_pred HHHHHHCCCChhHhhCCc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 5788999995 5556555 469999999999999999999999999999999999999999999999876 89999
Q ss_pred EEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 89 CSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 89 ~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+++|++ +++..++|++++|++|+++..|
T Consensus 201 ~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 201 FITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred EEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 999996 4788899999999999998654
No 177
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.84 E-value=2e-20 Score=182.01 Aligned_cols=103 Identities=23% Similarity=0.409 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+..+++.++++.+||.+..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 117 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~ 191 (221)
T TIGR02211 117 EAKERAYEMLEKVGLEHRINHRPS-----ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191 (221)
T ss_pred HHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 345678899999999877776654 59999999999999999999999999999999999999999999999875
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI 114 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~ 114 (527)
|+|+|+++|++. ++. .+|++++|++|+++
T Consensus 192 ~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 192 NTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 899999999974 554 47999999999875
No 178
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.84 E-value=2.2e-20 Score=187.13 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..++++++++.+|+. +..++.. +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 126 ~~~~~~~~~l~~~gl~~~~~~~~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~ 200 (268)
T PRK10419 126 ERLARASEMLRAVDLDDSVLDKRP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ 200 (268)
T ss_pred HHHHHHHHHHHHcCCChhHhhCCC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH
Confidence 3445789999999996 4566554 469999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|+|+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 201 ~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 201 FGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred cCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 89999999996 5788899999999999999999887653
No 179
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.8e-20 Score=184.78 Aligned_cols=116 Identities=24% Similarity=0.332 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+..... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 198 (253)
T PRK14267 121 ELDERVEWALKKAALWDEVKDR-LNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-E 198 (253)
T ss_pred HHHHHHHHHHHHcCCccchhhh-hccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-C
Confidence 4456788899999985321111 1223457999999999999999999999999999999999999999999999976 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 199 ~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 199 YTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred CEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 8999999996 5788999999999999999999987653
No 180
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=2.8e-20 Score=183.00 Aligned_cols=113 Identities=23% Similarity=0.336 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+..++++++++.+++.+..++..+ .||+|||||++||++++.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~ 180 (237)
T TIGR00968 106 KIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180 (237)
T ss_pred HHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 345678899999999877777654 59999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|+|+++|++ +++.+++|++++|++|++++.|+.++..
T Consensus 181 ~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 181 HVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred CCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 89999999996 5788999999999999999999877653
No 181
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.84 E-value=1.6e-20 Score=203.83 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|
T Consensus 113 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~t 187 (490)
T PRK10938 113 PARCEQLAQQFGITALLDRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGIT 187 (490)
T ss_pred HHHHHHHHHHcCCHhhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 4678899999999888777765 59999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
||+++|++ +++.+.||++++|++|+++..|++++.
T Consensus 188 vii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 188 LVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred EEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999996 578899999999999999999987764
No 182
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.8e-20 Score=184.55 Aligned_cols=115 Identities=21% Similarity=0.381 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+...+.. +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |
T Consensus 121 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~ 198 (251)
T PRK14244 121 KLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-N 198 (251)
T ss_pred HHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 34566788999999965321111 123457999999999999999999999999999999999999999999999964 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ .++.+++|++++|++|+++..|++++.
T Consensus 199 ~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 199 FTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred CeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999996 478899999999999999999987755
No 183
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.84 E-value=2.1e-20 Score=203.79 Aligned_cols=112 Identities=17% Similarity=0.279 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||.+..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 190 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAG-----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQG 190 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 345678899999999887777665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 191 ~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 191 VGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999996 578899999999999999999988764
No 184
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=3.2e-20 Score=185.01 Aligned_cols=117 Identities=24% Similarity=0.355 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+++.+...... +..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 126 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~- 203 (259)
T PRK14274 126 KKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE- 203 (259)
T ss_pred HHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 344567888999999854211111 223457999999999999999999999999999999999999999999999975
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 204 ~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 204 KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 78999999996 5788999999999999999999988653
No 185
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.2e-20 Score=207.97 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++..++++++++.+||. +..++.+ ++|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 437 ~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~ 511 (623)
T PRK10261 437 KAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQR 511 (623)
T ss_pred HHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 34557889999999995 4556555 46999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|||+++|++ +.+.++||++++|++|++++.|+++++.
T Consensus 512 ~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 512 DFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 6 89999999996 5788999999999999999999988764
No 186
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.84 E-value=2.9e-20 Score=186.48 Aligned_cols=111 Identities=24% Similarity=0.351 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQV 76 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~---------~~p~llllDEPtsgLD~~~~~~i~~~ 76 (527)
..++++++++.+||++..++.++ .||||||||++||++|+ .+|++|+|||||+|||+.++..+.+.
T Consensus 122 ~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~ 196 (272)
T PRK13547 122 DGEIAWQALALAGATALVGRDVT-----TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196 (272)
T ss_pred HHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHH
Confidence 44678899999999877766554 69999999999999999 59999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 77 LKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 77 l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|++++++ |.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 197 l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 197 VRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999876 89999999996 578889999999999999999988765
No 187
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.84 E-value=5.3e-20 Score=183.79 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..+.++++++.++|.+..++.++ .||||||||++||++++.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVK-----KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 3445567788899999887776654 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|.|+|+++|++ .++.+++|++++|++|+++..|+.++..+
T Consensus 193 g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 193 NKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999995 57889999999999999999999877644
No 188
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=203.11 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=101.0
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+||. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++.++++.|++++++|.
T Consensus 373 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 447 (501)
T PRK11288 373 AENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447 (501)
T ss_pred HHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence 45788999999994 67777776 5999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++||+ +++.++||++++|++|++++.|++++.
T Consensus 448 tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 448 AVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999996 679999999999999999999987753
No 189
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.83 E-value=2.5e-20 Score=204.22 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++.+++++++++.+||. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 399 ~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 473 (529)
T PRK15134 399 AQREQQVIAVMEEVGLDPETRHRYPA-----EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 (529)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCCc-----cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHH
Confidence 34556789999999997 45666554 6999999999999999999999999999999999999999999999987
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.|||+++|++ .++.++||++++|++|+++..|+++++.
T Consensus 474 ~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 474 KHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred hhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 5 89999999996 5788999999999999999999887653
No 190
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.7e-20 Score=182.65 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++..+++.++|+.+||.. ..-++++++||||||||+.|||||+.+|+++++|||+|.||...+.++.++|+++++
T Consensus 82 ~~~~~~~v~elL~~Vgl~~----~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 82 KEERRERVLELLEKVGLPE----EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred hhHHHHHHHHHHHHhCCCH----HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 4567788999999999864 233457789999999999999999999999999999999999999999999999998
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ |.+.+.++||. ..+.+++||+.+|+.|+++..|+.+++.
T Consensus 158 ~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~ 198 (268)
T COG4608 158 ELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVF 198 (268)
T ss_pred HhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHh
Confidence 6 99999999995 5899999999999999999999998765
No 191
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.2e-20 Score=185.04 Aligned_cols=115 Identities=25% Similarity=0.386 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+...... +..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~ 212 (267)
T PRK14235 135 ELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-N 212 (267)
T ss_pred HHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-C
Confidence 44567889999999964211111 223457999999999999999999999999999999999999999999999976 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ +.+..++|++++|++|+++..|++++.
T Consensus 213 ~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 213 YTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred CeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 8999999996 578899999999999999999987765
No 192
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=182.89 Aligned_cols=115 Identities=29% Similarity=0.388 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.++|.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 114 ~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~ 191 (246)
T PRK14269 114 EEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-N 191 (246)
T ss_pred HHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-C
Confidence 34456789999999953221111 223457999999999999999999999999999999999999999999999865 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+++|++ +++.+.+|++++|++|+++..|++++.
T Consensus 192 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 192 LSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred CEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999996 578899999999999999999988765
No 193
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.83 E-value=3.6e-20 Score=181.09 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 195 (228)
T PRK10584 121 RQSRNGAKALLEQLGLGKRLDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE 195 (228)
T ss_pred HHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3456788999999999877776654 69999999999999999999999999999999999999999999999765
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEE
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~ 115 (527)
|.|||+++|++. .+ ..+|++++|++|+++.
T Consensus 196 ~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 196 HGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred cCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 899999999975 55 4599999999999864
No 194
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5e-20 Score=182.75 Aligned_cols=112 Identities=26% Similarity=0.341 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+.+++++++++.++|.+ ..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 193 (251)
T PRK14270 119 ELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193 (251)
T ss_pred HHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 44567788999998842 3333 34579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ ++|+|+++|++ +++.+++||+++|++|++++.|++++..
T Consensus 194 ~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 194 KK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred Hh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 77 58999999996 5788999999999999999999988653
No 195
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.83 E-value=3.2e-20 Score=202.09 Aligned_cols=112 Identities=22% Similarity=0.369 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.+++++++++.+||. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3456788999999995 56676665 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +++.++||++++|++|+++..|+++++
T Consensus 445 g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 445 GLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999996 578999999999999999999988764
No 196
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.1e-20 Score=183.80 Aligned_cols=117 Identities=28% Similarity=0.386 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (527)
+.++++.++++.+++.+..+.. .+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 122 ~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~ 200 (261)
T PRK14258 122 EIDDIVESALKDADLWDEIKHK-IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS 200 (261)
T ss_pred HHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 3456788899999985422111 1234457999999999999999999999999999999999999999999999976 4
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeC-----CeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSN-----GETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~-----G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++ .++.++||++++|++ |++++.|+++++.
T Consensus 201 ~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 201 ELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 89999999996 579999999999999 9999999988763
No 197
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3.6e-20 Score=201.16 Aligned_cols=112 Identities=16% Similarity=0.267 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||.+..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++++++|
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 184 (491)
T PRK10982 110 KMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERG 184 (491)
T ss_pred HHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 445678999999999877777665 599999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 185 ~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 185 CGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999996 578899999999999999999987664
No 198
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.83 E-value=2.8e-20 Score=202.79 Aligned_cols=111 Identities=21% Similarity=0.294 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.+++++++++.+||+ +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g 453 (510)
T PRK15439 379 ENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQN 453 (510)
T ss_pred HHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCC
Confidence 345688999999997 66777665 599999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|||+++|++ +++.++||++++|++|+++..|+++++
T Consensus 454 ~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 454 VAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999996 579999999999999999999887643
No 199
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.83 E-value=3.2e-20 Score=181.63 Aligned_cols=109 Identities=21% Similarity=0.319 Sum_probs=96.2
Q ss_pred HHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009738 8 DIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (527)
Q Consensus 8 ~~v~~~l~~l~-L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~ 85 (527)
+.++++++.++ +.+..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 109 ~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~ 183 (230)
T TIGR03410 109 KIPDEIYELFPVLKEMLGRRG-----GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183 (230)
T ss_pred HHHHHHHHHHHhHHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCc
Confidence 34567777776 566556555 469999999999999999999999999999999999999999999999875 89
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +++..++|++++|++|+++..|+.+++
T Consensus 184 tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 184 AILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999996 578889999999999999999988765
No 200
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.4e-20 Score=182.56 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+++.+...+. -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ 198 (252)
T PRK14239 121 LDEAVEKSLKGASIWDEVKDR-LHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DY 198 (252)
T ss_pred HHHHHHHHHHHcCCchhHHHH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CC
Confidence 456677889999875321111 1234457999999999999999999999999999999999999999999999975 68
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|||+++|++ +++.+++|++++|++|++++.|+.++..
T Consensus 199 tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 199 TMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred eEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999996 5788999999999999999999887653
No 201
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=207.42 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHcCCcc---cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQA---CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~---~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
.++.+++++++++.+||.+ ..+++ +.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++
T Consensus 139 ~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~ 213 (623)
T PRK10261 139 REEAMVEAKRMLDQVRIPEAQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV 213 (623)
T ss_pred HHHHHHHHHHHHHHCCCCChhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence 3455678999999999953 34444 456999999999999999999999999999999999999999999999
Q ss_pred HHhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 80 IALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 80 l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++++ |.|||+++|+. .++.++|||+++|++|+++..|+++++
T Consensus 214 l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~ 256 (623)
T PRK10261 214 LQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQI 256 (623)
T ss_pred HHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHh
Confidence 9865 89999999995 578899999999999999999988765
No 202
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.8e-20 Score=182.39 Aligned_cols=116 Identities=22% Similarity=0.374 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+++.+...... +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~- 196 (252)
T PRK14256 119 SEADEIVESSLKRVALWDEVKDRL-KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE- 196 (252)
T ss_pred HHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-
Confidence 344567889999999864211111 123457999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 197 ~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 197 KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 58999999996 578899999999999999999988765
No 203
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=2.5e-20 Score=187.77 Aligned_cols=120 Identities=18% Similarity=0.347 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++++.++++.++|+..|+.+-... + +.+|++|||||||||.||+||+.+|++|+.||||+.||..-+.+|.++|++|
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~r-l-~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L 203 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKR-L-DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL 203 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhh-h-hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence 3567888999999999999764433 3 4689999999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.++ |..+++++||. .-+.+++|||.+|.+|+++..|+++++.
T Consensus 204 q~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 204 QAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred HHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHHHh
Confidence 876 99999999996 5789999999999999999999987653
No 204
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=5.6e-20 Score=183.18 Aligned_cols=112 Identities=23% Similarity=0.390 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++.+++++++++.+||. +..++. +.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 119 ~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 193 (258)
T PRK14241 119 KDLDELVEKSLRGANLWNEVKDRLDKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193 (258)
T ss_pred HHHHHHHHHHHHHcCCchhhhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 34456788899999984 333443 456999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEe------CCeEEEEeChhhH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMA 122 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~------~G~~~~~G~~~~~ 122 (527)
+++ ++|+|+++|++ +++.+++|++++|+ +|++++.|++++.
T Consensus 194 ~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 194 LKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred Hhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 965 68999999996 57889999999997 7999999988765
No 205
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.83 E-value=3.8e-20 Score=222.67 Aligned_cols=119 Identities=28% Similarity=0.443 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++.+|++++ +|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++++
T Consensus 2044 ~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~ 2118 (2272)
T TIGR01257 2044 AEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR 2118 (2272)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 34556788999999999998888776 5999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHh
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~ 127 (527)
+|+|||+++|++ +++..+|||+++|.+|+++..|+++++...|.
T Consensus 2119 ~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2119 EGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 899999999995 68999999999999999999999999877664
No 206
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.8e-20 Score=183.63 Aligned_cols=109 Identities=25% Similarity=0.396 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++++.+.++.+++. +..+++ +..||||||||++||++|+.+|+++||||||+|||+.++..+.+.|+++++
T Consensus 138 ~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 212 (268)
T PRK14248 138 DEIVEESLTKAALWDEVKDRLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE 212 (268)
T ss_pred HHHHHHHHHHcCCCcchHHHHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc
Confidence 45677888888884 233333 456999999999999999999999999999999999999999999999965
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+.|||+++|++ +++.++||++++|++|++++.|++++.
T Consensus 213 -~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 213 -EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred -CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 58999999996 578899999999999999999988765
No 207
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4.9e-20 Score=201.08 Aligned_cols=108 Identities=19% Similarity=0.361 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+||. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.
T Consensus 386 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 460 (510)
T PRK09700 386 QRTAENQRELLALKCHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460 (510)
T ss_pred HHHHHHHHHhcCCCCCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 45688999999996 67777665 5999999999999999999999999999999999999999999999988899
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
|||+++|++ +++.++||++++|++|+++..++..
T Consensus 461 tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 494 (510)
T PRK09700 461 VILMVSSEL-PEIITVCDRIAVFCEGRLTQILTNR 494 (510)
T ss_pred EEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecCc
Confidence 999999996 5788999999999999999888663
No 208
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=7.7e-20 Score=181.28 Aligned_cols=111 Identities=28% Similarity=0.441 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+.+++++++++.+++.+ ..++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++
T Consensus 118 ~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 118 KLDEIVEKSLKGAALWDEVKDRLKKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHhcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 45667888899988743 23333 4579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++ ++|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 193 ~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 193 KK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred hc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 64 78999999996 578899999999999999999987765
No 209
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.83 E-value=4.5e-20 Score=173.92 Aligned_cols=100 Identities=30% Similarity=0.515 Sum_probs=90.2
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Q 009738 12 ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCS 90 (527)
Q Consensus 12 ~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~ 90 (527)
++++.+||++..++.+ +.||||||||++|||+++.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++
T Consensus 80 q~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 154 (180)
T cd03214 80 QALELLGLAHLADRPF-----NELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154 (180)
T ss_pred HHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788899987766655 469999999999999999999999999999999999999999999999876 8999999
Q ss_pred ecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 91 IHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 91 ~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+|++ +++.+++|++++|++|++++.|
T Consensus 155 sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 155 LHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9996 4778999999999999997654
No 210
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=5.5e-20 Score=201.12 Aligned_cols=112 Identities=19% Similarity=0.332 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCcc-----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQA-----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~-----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
.+++++++++.+||.+ ..++++ ++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 399 ~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 399 ARMKAVITLKMVGFDEEKAEEILDKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHHHHHHHhCCCCCccchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4567889999999975 345544 569999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ |.|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 474 ~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 474 REEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred HHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 875 89999999996 5788999999999999999999887654
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.4e-20 Score=180.92 Aligned_cols=114 Identities=24% Similarity=0.393 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.++++++.++.+++.+...... +..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++
T Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~ 195 (249)
T PRK14253 118 LDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NY 195 (249)
T ss_pred HHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 4466778888888753221111 223457999999999999999999999999999999999999999999999976 58
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 196 tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 196 TIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred eEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999996 578999999999999999999987754
No 212
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=8.3e-20 Score=181.06 Aligned_cols=116 Identities=28% Similarity=0.393 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.++++++.++.+|+.+..+. ..+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~ 195 (250)
T PRK14262 118 KLDRIVEESLKKAALWDEVKS-ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-N 195 (250)
T ss_pred HHHHHHHHHHHHcCCCchhHH-HHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-C
Confidence 345567888999998642111 12234567999999999999999999999999999999999999999999999975 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 196 ~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 196 YTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred cEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 8999999996 4688999999999999999999887654
No 213
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=6.1e-20 Score=199.86 Aligned_cols=112 Identities=16% Similarity=0.286 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~-~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..++++++++.+||.+.. ++++ ++|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 190 (500)
T TIGR02633 116 AMYLRAKNLLRELQLDADNVTRPV-----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190 (500)
T ss_pred HHHHHHHHHHHHcCCCCCcccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 4456788999999997654 3444 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|.|||+++|++ +++.++||++++|++|+++..|++++.
T Consensus 191 g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 191 GVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999995 578899999999999999999887643
No 214
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.4e-20 Score=180.07 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~ 85 (527)
....++++..+|++|..++.- ..|||||||||+|||||+++|++|+||||.+.||-..+.+++-.|++|+++ +.
T Consensus 106 ~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~I 180 (352)
T COG4148 106 RAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180 (352)
T ss_pred hHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCC
Confidence 456788999999999988754 469999999999999999999999999999999999999999999999987 77
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.|+.++|.+ +|+.+++|+|++|++|++...|+.+++.+
T Consensus 181 PIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 181 PILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred CEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 899999995 79999999999999999999999987753
No 215
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1e-19 Score=183.98 Aligned_cols=110 Identities=22% Similarity=0.353 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++++.++++.+|+. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++
T Consensus 155 ~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 155 LEEIVEKSLRKAALWDEVSDRLDKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHHHHHHhCCccchhhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 345677888888874 333433 45799999999999999999999999999999999999999999999987
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+ +.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 230 ~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 230 G-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 6 58999999996 578899999999999999999988765
No 216
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.82 E-value=7.5e-20 Score=181.48 Aligned_cols=108 Identities=19% Similarity=0.338 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~t 86 (527)
+++.++++.+||++..++++. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|
T Consensus 99 ~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~t 173 (251)
T PRK09544 99 EDILPALKRVQAGHLIDAPMQ-----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCA 173 (251)
T ss_pred HHHHHHHHHcCChHHHhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 567889999999988777654 59999999999999999999999999999999999999999999999876 899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+++|++ +++.+.+|++++|++ +++..|++++.
T Consensus 174 iiivsH~~-~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 174 VLMVSHDL-HLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred EEEEecCH-HHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 99999996 578899999999964 78899988765
No 217
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=181.82 Aligned_cols=115 Identities=21% Similarity=0.317 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.++++.++++.++|.+..++.. +..++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 135 ~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 212 (267)
T PRK14237 135 VLDEIVETSLKQAALWDQVKDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-N 212 (267)
T ss_pred HHHHHHHHHHHHcCCCchhhhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-C
Confidence 45567888999999864322222 234567999999999999999999999999999999999999999999999964 7
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 213 ~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 213 YTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred CEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 8999999997 478899999999999999999998765
No 218
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=180.12 Aligned_cols=111 Identities=23% Similarity=0.348 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
..+++++.++.+++. +..+++ ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 121 ~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 121 LMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 345666777777764 233443 45699999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ ++|+|+++|++ .++.++||++++|++|++++.|++++..
T Consensus 196 ~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 196 K-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 5 69999999996 4788899999999999999999987653
No 219
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=180.06 Aligned_cols=114 Identities=20% Similarity=0.310 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.++++++.++.++|.+..... .+..+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ ++.
T Consensus 120 ~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~ 197 (251)
T PRK14249 120 LDEVVEKSLRQAALWDEVKDN-LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNY 197 (251)
T ss_pred HHHHHHHHHHHhCCchhhhhH-hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCC
Confidence 345677788888875321111 223456799999999999999999999999999999999999999999999995 579
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|||+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 198 tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 198 TIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred EEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999996 578899999999999999999988765
No 220
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.1e-19 Score=187.05 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+.+++.++.++|.+..++.++ .....||||||||++||||++.+|+||+|||||+|||+.+...+.+.|+++.+ ++|+
T Consensus 200 ~~~~~~l~~~~L~~~l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Ti 277 (329)
T PRK14257 200 KIVEKSLKSAALWDEVKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSI 277 (329)
T ss_pred HHHHHHHHHcCCcchhhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEE
Confidence 457788899988544444443 34567999999999999999999999999999999999999999999999876 5999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+++|++ ..+.+++||+++|++|+++..|+++++.
T Consensus 278 i~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 278 IIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999996 5788899999999999999999998764
No 221
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=179.88 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
..++++++++.+++.. ..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 120 ~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 194 (251)
T PRK14251 120 IDQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194 (251)
T ss_pred HHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH
Confidence 3456788899999852 2333 345799999999999999999999999999999999999999999999986
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+ +.|||+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 195 ~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 195 H-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred c-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 5 68999999996 578899999999999999999988765
No 222
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=181.96 Aligned_cols=114 Identities=25% Similarity=0.385 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+++.+...+.. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.
T Consensus 141 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~ 218 (272)
T PRK14236 141 LDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KY 218 (272)
T ss_pred HHHHHHHHHHHcCCChhHHHHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CC
Confidence 3456888899999864211111 223457999999999999999999999999999999999999999999999976 68
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +++.+.+|++++|++|+++..|++++.
T Consensus 219 tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 219 TIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred eEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 999999996 578899999999999999999987754
No 223
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.3e-19 Score=180.70 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+|+.+.... ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 122 ~~~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~ 199 (259)
T PRK14260 122 DLDEIVESALKGAALWQEVKD-KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-E 199 (259)
T ss_pred HHHHHHHHHHHHcCCcchhhh-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 345677888999988421111 11234457999999999999999999999999999999999999999999999975 5
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEe-----CCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLS-----NGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~-----~G~~~~~G~~~~~ 122 (527)
+|+|+++|++ +++.+++|++++|+ +|+++..|++++.
T Consensus 200 ~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 200 LTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred CEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHH
Confidence 8999999996 57899999999998 5999999998875
No 224
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.82 E-value=9.9e-20 Score=179.00 Aligned_cols=90 Identities=26% Similarity=0.469 Sum_probs=82.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. ++ ..||++++|++
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~ 211 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK 211 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC
Confidence 4567999999999999999999999999999999999999999999999974 899999999975 55 46999999999
Q ss_pred CeEEEEeChhhHH
Q 009738 111 GETIYFGDAKMAV 123 (527)
Q Consensus 111 G~~~~~G~~~~~~ 123 (527)
|++++.|++++..
T Consensus 212 G~i~~~~~~~~~~ 224 (237)
T cd03252 212 GRIVEQGSHDELL 224 (237)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999987654
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=1.2e-19 Score=197.62 Aligned_cols=109 Identities=22% Similarity=0.380 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.+++++++++.++|.+ ..+++++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|
T Consensus 379 ~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 453 (500)
T TIGR02633 379 ELQIIGSAIQRLKVKTASPFLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453 (500)
T ss_pred HHHHHHHHHHhcCccCCCccCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCC
Confidence 4567889999999964 5666665 599999999999999999999999999999999999999999999999889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
.|||+++|++ +++.++||++++|++|+++..++.+
T Consensus 454 ~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 454 VAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 9999999996 5789999999999999999877654
No 226
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.82 E-value=8.5e-20 Score=177.41 Aligned_cols=107 Identities=25% Similarity=0.424 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~------~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++.+.++.+++.+..++... ...+..||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 108 ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred HHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 456778888999877665431 12345799999999999999999999999999999999999999999999997
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
++ .|||+++|++. .+ +++|++++|++|++++.|
T Consensus 188 ~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 188 GD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 65 89999999975 44 799999999999998654
No 227
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.9e-19 Score=181.15 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..+++.++++.++|.+..++.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~- 211 (276)
T PRK14271 134 KEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211 (276)
T ss_pred HHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-
Confidence 344456778899999975332221 123457999999999999999999999999999999999999999999999976
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.|||+++|++ +++.+++|++++|++|+++..|++++..
T Consensus 212 ~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 212 RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 48999999996 5788999999999999999999987653
No 228
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.5e-19 Score=181.30 Aligned_cols=114 Identities=23% Similarity=0.319 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.+++....+. .-+..++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|
T Consensus 128 ~~~~~~~l~~~~l~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~t 205 (269)
T PRK14259 128 DELVERSLRKAAVWDECKD-KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFT 205 (269)
T ss_pred HHHHHHHHHHhCCcchhhh-hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 4567788888887421111 11233457999999999999999999999999999999999999999999999965 689
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC-----------CeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN-----------GETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~-----------G~~~~~G~~~~~~ 123 (527)
+|+++|++ +++.++||++++|++ |++++.|+++++.
T Consensus 206 iiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 206 IVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHH
Confidence 99999996 578999999999996 6789999988764
No 229
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.7e-19 Score=179.18 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+++.+...+.. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 121 ~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~ 198 (253)
T PRK14261 121 TLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-E 198 (253)
T ss_pred HHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-C
Confidence 34556788888888853211111 223457999999999999999999999999999999999999999999999976 5
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+++|++ .++.+.+|++++|++|+++..|++++.
T Consensus 199 ~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 199 YTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred ceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 8999999996 568889999999999999999998765
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=178.51 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++++.+.++.+++....... -+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 122 ~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~t 199 (252)
T PRK14255 122 DEAVETSLKQAAIWDEVKDH-LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYT 199 (252)
T ss_pred HHHHHHHHHHcCCccchhhH-HhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence 45567778888764211111 1223457999999999999999999999999999999999999999999999976 489
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+++|++ +++.+.+|++++|++|+++..|++.+..
T Consensus 200 ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 200 IILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999996 5788999999999999999999887653
No 231
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.5e-19 Score=196.83 Aligned_cols=110 Identities=21% Similarity=0.371 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||.+..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 189 (501)
T PRK11288 115 RLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE 189 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 3456688999999999876666554 69999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeCh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~ 119 (527)
|+|||+++|++ +++..+||++++|++|+++..++.
T Consensus 190 g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 190 GRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999996 578899999999999999877653
No 232
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=179.60 Aligned_cols=115 Identities=24% Similarity=0.318 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
..++++++++.++|.+..+... +..++.||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ ++
T Consensus 122 ~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~ 199 (261)
T PRK14263 122 LGDRVKHALQGAALWDEVKDKL-KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DY 199 (261)
T ss_pred HHHHHHHHHHHcCCchhhhhhh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CC
Confidence 4467889999999865332222 234567999999999999999999999999999999999999999999999964 78
Q ss_pred EEEEEecCChhHHHhhcCeEEEEe--------CCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLS--------NGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~--------~G~~~~~G~~~~~~ 123 (527)
|+|+++|++ +++.+++|++++|+ +|+++..|+.++..
T Consensus 200 tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 200 TIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred eEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 999999996 57889999999996 89999999987653
No 233
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.9e-19 Score=180.70 Aligned_cols=109 Identities=24% Similarity=0.367 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCc----ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQ----ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~----~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++.+.+.++.+++. +..++ .+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 141 ~~~~~~~l~~~~~~~~l~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 215 (271)
T PRK14238 141 DEIVEKSLRGAAIWDELKDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK 215 (271)
T ss_pred HHHHHHHHHHcCCcchHHHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc
Confidence 34566777777542 23333 4457999999999999999999999999999999999999999999999976
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++|+|+++|++ +++.+++|++++|++|+++..|++++.
T Consensus 216 -~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 216 -DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred -CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 68999999996 578899999999999999999988765
No 234
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.9e-20 Score=170.41 Aligned_cols=116 Identities=22% Similarity=0.414 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.+|.++.+++.++.++|++..|+.+. +||||||||.-||+.++++.+.++||||.++||-..+.++|+.|+++++
T Consensus 109 t~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~ 183 (252)
T COG4604 109 TKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183 (252)
T ss_pred chHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHH
Confidence 35678899999999999998887664 6999999999999999999999999999999999999999999999998
Q ss_pred C-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 83 D-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 83 ~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+ |+||+++.||. .....++|.++-|++|+++..|+++++.+
T Consensus 184 el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 184 ELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred HhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 7 99999999996 57888999999999999999999998753
No 235
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.3e-19 Score=177.84 Aligned_cols=115 Identities=26% Similarity=0.321 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.++++.+.++.+||.+...... +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +
T Consensus 118 ~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~ 195 (250)
T PRK14266 118 FIEERVEESLKAAALWDEVKDKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-D 195 (250)
T ss_pred HHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-C
Confidence 34567888999999854221111 234457999999999999999999999999999999999999999999999965 7
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.|+|+++|++ .++...+|++++|++|++++.|++++.
T Consensus 196 ~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 196 YTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred CeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 8999999996 578999999999999999999998765
No 236
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.3e-19 Score=168.76 Aligned_cols=113 Identities=25% Similarity=0.364 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLK 78 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~------~p~llllDEPtsgLD~~~~~~i~~~l~ 78 (527)
|..+.+++.|...++.+.+.+.+. .|||||||||.+||.|++ ++++||||||||.||...++.++++.+
T Consensus 111 e~~~i~~~ala~~d~~~la~R~y~-----~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR 185 (259)
T COG4559 111 EDERIAAQALAATDLSGLAGRDYR-----TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185 (259)
T ss_pred hhHHHHHHHHHHcChhhhhccchh-----hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence 455678899999999998887764 599999999999999997 456999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 79 ~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++++|..|+++.||. +-...++||+++|++||++..|+++++.
T Consensus 186 ~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 186 QLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred HHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 9999999999999996 4688899999999999999999999875
No 237
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=178.05 Aligned_cols=113 Identities=29% Similarity=0.438 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++.+++++++++.+++.+ ..++ .++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~ 198 (257)
T PRK14246 124 REIKKIVEECLRKVGLWKEVYDRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198 (257)
T ss_pred HHHHHHHHHHHHHcCCCccchhhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 345567889999999964 3333 3457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ +.|+|+++|++ ..+.++||++++|++|+++..|+.++..
T Consensus 199 ~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 199 LKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred Hhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 965 68999999996 5788999999999999999999887654
No 238
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=179.98 Aligned_cols=114 Identities=22% Similarity=0.300 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++.+++.++.+++.+..... -+..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +.|
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t 212 (274)
T PRK14265 135 DELVEDSLRRAAIWEEVKDK-LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYT 212 (274)
T ss_pred HHHHHHHHHHcccchhhHHH-hcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCE
Confidence 34566778888874211111 1233457999999999999999999999999999999999999999999999975 689
Q ss_pred EEEEecCChhHHHhhcCeEEEEe---------CCeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~---------~G~~~~~G~~~~~~ 123 (527)
||+++|++ +++.+++|++++|+ +|+++..|+++++.
T Consensus 213 iii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 213 IIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999996 57889999999998 89999999998764
No 239
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1.8e-19 Score=195.79 Aligned_cols=110 Identities=28% Similarity=0.432 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.+++++++++.+++. +..+++++ +|||||||||+||++++.+|++|||||||+|||+.++..+++.|++++++
T Consensus 366 ~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~ 440 (491)
T PRK10982 366 RMKSDTQWVIDSMRVKTPGHRTQIG-----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK 440 (491)
T ss_pred HHHHHHHHHHHhcCccCCCcccccc-----cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC
Confidence 3456678899999995 45566654 69999999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
|.|||+++|++ +++.++|||+++|++|+++..++++
T Consensus 441 ~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 441 DKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999996 5788999999999999999877654
No 240
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=178.85 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
.++++++++.+++.+..+.. -+..+..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|
T Consensus 125 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~t 202 (264)
T PRK14243 125 DELVERSLRQAALWDEVKDK-LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYT 202 (264)
T ss_pred HHHHHHHHHHhCchhhHHHH-hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCE
Confidence 45667778888874321111 1234457999999999999999999999999999999999999999999999976 489
Q ss_pred EEEEecCChhHHHhhcCeEEEEe---------CCeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLS---------NGETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~---------~G~~~~~G~~~~~~ 123 (527)
||+++|++ +++.++||++++|+ +|+++..|+++++.
T Consensus 203 vi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 203 IIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999996 57999999999998 89999999988763
No 241
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.6e-19 Score=180.93 Aligned_cols=110 Identities=27% Similarity=0.411 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCcc----cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQA----CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~----~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
..++++++++.+||.+ ..+++ +..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++
T Consensus 153 ~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 153 IDERVEESLRRAALWDEVKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHHHHHHcCCCchhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 4567889999999853 33443 45799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEE-EEeCCeEEEEeChhhH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKMA 122 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~-~l~~G~~~~~G~~~~~ 122 (527)
++ .|+|+++|++ .++..++||++ +|++|+++..|++++.
T Consensus 228 ~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 228 EE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred cC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 75 8999999996 57888999975 6799999999987754
No 242
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.81 E-value=2.8e-19 Score=174.69 Aligned_cols=100 Identities=23% Similarity=0.336 Sum_probs=88.8
Q ss_pred HHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 11 EETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 11 ~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
.+.++.++|.+ ..+.+. .+||||||||++||++|+.+| ++++|||||+|||+.++.++.+.|++++++|.|+
T Consensus 118 ~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~ti 192 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192 (226)
T ss_pred HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 56789999975 345444 569999999999999999998 5999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEE------eCCeEEEEe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLL------SNGETIYFG 117 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G 117 (527)
|+++|++. ++ ..||++++| ++|+++++|
T Consensus 193 i~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 193 LVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999974 45 689999999 999999876
No 243
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.81 E-value=2.5e-19 Score=174.29 Aligned_cols=103 Identities=23% Similarity=0.425 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL- 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~- 82 (527)
++.+++++++++.+||++..++.+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 190 (220)
T TIGR02982 116 QEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190 (220)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 445668899999999987777665 46999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
.++|+|+++|++. +.+++|++++|++|++
T Consensus 191 ~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 191 QGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred cCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 4899999999963 4689999999999986
No 244
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.80 E-value=2e-19 Score=173.38 Aligned_cols=120 Identities=25% Similarity=0.388 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++.++.+++.+...+.++|+...+.++ +.||-|||.|+.+|.+|+++|++|||||||=|||...+..+.+.|++.
T Consensus 128 Ipd~~F~~r~~~l~eiLdl~~~lk~~v-----r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~ 202 (325)
T COG4586 128 IPDDEFAERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY 202 (325)
T ss_pred CCHHHHHHHHHHHHHHhcchhhhhhhh-----hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence 356788899999999999998887776 469999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHH
Q 009738 81 ALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (527)
Q Consensus 81 ~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f 126 (527)
.++ +.||+.++|+. +++..+||||+++++|+++|+|+.++..+-|
T Consensus 203 n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 203 NEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 864 89999999995 6899999999999999999999998876544
No 245
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.80 E-value=2.4e-19 Score=215.88 Aligned_cols=116 Identities=26% Similarity=0.375 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++.+|++++ +|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++ +
T Consensus 1036 ~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~ 1109 (2272)
T TIGR01257 1036 EEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S 1109 (2272)
T ss_pred HHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C
Confidence 4556789999999999988887765 599999999999999999999999999999999999999999999995 5
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f 126 (527)
|+|||+++|++ +++..++||+++|++|+++..|+++++.+.|
T Consensus 1110 g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1110 GRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 89999999995 6889999999999999999999998876544
No 246
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.80 E-value=2.9e-19 Score=175.83 Aligned_cols=91 Identities=31% Similarity=0.437 Sum_probs=83.0
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+++|+++|++. ++. .||++++|++
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~ 212 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQN 212 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEEC
Confidence 456799999999999999999999999999999999999999999999997 7899999999974 565 7999999999
Q ss_pred CeEEEEeChhhHHH
Q 009738 111 GETIYFGDAKMAVK 124 (527)
Q Consensus 111 G~~~~~G~~~~~~~ 124 (527)
|++++.|+.++..+
T Consensus 213 G~i~~~~~~~~~~~ 226 (238)
T cd03249 213 GQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCCHHHHhh
Confidence 99999998776543
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=4.2e-19 Score=181.09 Aligned_cols=114 Identities=24% Similarity=0.403 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.++|.+...+.. +..+++||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~ 250 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-Y 250 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-C
Confidence 3567888999998853222222 2345679999999999999999999999999999999999999999999999875 8
Q ss_pred EEEEEecCChhHHHhhcCeE-EEEeCCeEEEEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDL-LLLSNGETIYFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v-~~l~~G~~~~~G~~~~~ 122 (527)
|+|+++|++ +.+.+++|++ ++|++|+++..|++++.
T Consensus 251 tiiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 251 TVVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred EEEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 999999996 5788999997 57799999999988765
No 248
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.1e-19 Score=174.49 Aligned_cols=111 Identities=25% Similarity=0.330 Sum_probs=90.7
Q ss_pred HHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 9 IVEETIIKMGLQACAETKI------GNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i------~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++++.++.+++.+..+... .+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~- 186 (229)
T cd03254 108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM- 186 (229)
T ss_pred HHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-
Confidence 4455566666654433211 123356899999999999999999999999999999999999999999999996
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+|+|+++|++. ++. .+|++++|++|++++.|+.++.
T Consensus 187 ~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~~ 224 (229)
T cd03254 187 KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDEL 224 (229)
T ss_pred CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHHH
Confidence 5899999999974 454 5999999999999998887654
No 249
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.80 E-value=3.5e-19 Score=170.77 Aligned_cols=92 Identities=33% Similarity=0.446 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHh-hcCeEEEEeCC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY-LFDDLLLLSNG 111 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~-~~d~v~~l~~G 111 (527)
+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++++|+|+++|++. .+.+ .+|++++|++|
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G 181 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDG 181 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999999888899999999974 6666 79999999999
Q ss_pred eEEEEeChhhHHHHH
Q 009738 112 ETIYFGDAKMAVKFF 126 (527)
Q Consensus 112 ~~~~~G~~~~~~~~f 126 (527)
+++..|+.+ ..+++
T Consensus 182 ~i~~~~~~~-~~~~~ 195 (200)
T cd03217 182 RIVKSGDKE-LALEI 195 (200)
T ss_pred EEEEEccHH-HHhhh
Confidence 999999554 44444
No 250
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.1e-19 Score=175.06 Aligned_cols=105 Identities=26% Similarity=0.418 Sum_probs=88.5
Q ss_pred HHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009738 11 EETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88 (527)
Q Consensus 11 ~~~l~~l--~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi 88 (527)
++.++.+ ++++..+. .++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||
T Consensus 118 ~~~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii 191 (234)
T cd03251 118 HEFIMELPEGYDTVIGE-----RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTF 191 (234)
T ss_pred HHHHHhcccCcceeecc-----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 3444444 45444443 3457999999999999999999999999999999999999999999999974 89999
Q ss_pred EEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 89 CSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 89 ~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++|++. ++.. ||++++|++|+++..|++++..
T Consensus 192 ~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 192 VIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred EEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHH
Confidence 9999974 5655 9999999999999999877654
No 251
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.8e-19 Score=170.86 Aligned_cols=109 Identities=26% Similarity=0.404 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..+++..+++.+|+++.+|+++++ ||-||||||-|||||+.+|++||||||++|||...++++.+.|.+++..
T Consensus 146 ~~~~~~a~~lle~~g~~~la~r~~~~-----LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~ 220 (257)
T COG1119 146 AEDLAAAQWLLELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220 (257)
T ss_pred HHHHHHHHHHHHHcchhhhccCchhh-----cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC
Confidence 45677899999999999999998875 9999999999999999999999999999999999999999999999875
Q ss_pred --CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 84 --GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 84 --~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
+.++|+++|++ +|+-..+++++++++|++++.|.
T Consensus 221 ~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 221 PGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred CCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 78999999996 68999999999999999999874
No 252
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.80 E-value=3.9e-19 Score=170.95 Aligned_cols=98 Identities=29% Similarity=0.438 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||++..++.+. +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 183 (206)
T TIGR03608 109 KEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183 (206)
T ss_pred HHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhc
Confidence 3456678999999999887777664 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
|.|+|+++|++. . .+.+|++++|
T Consensus 184 ~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 184 GKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred CCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 999999999974 3 4689999875
No 253
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=5.8e-19 Score=174.54 Aligned_cols=100 Identities=20% Similarity=0.349 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tv 87 (527)
.++++++.++|.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+||
T Consensus 95 ~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~ti 169 (246)
T cd03237 95 FKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTA 169 (246)
T ss_pred HHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 46788999999887777665 59999999999999999999999999999999999999999999999864 8999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEE
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETI 114 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~ 114 (527)
|+++|++ ..+..+||++++|+++..+
T Consensus 170 iivsHd~-~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 170 FVVEHDI-IMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred EEEeCCH-HHHHHhCCEEEEEcCCCee
Confidence 9999995 5788899999999765433
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.2e-19 Score=175.90 Aligned_cols=113 Identities=23% Similarity=0.295 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++++++.++.+++.+..... -+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~t 212 (265)
T PRK14252 135 EERVENALRNAALWDEVKDR-LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVT 212 (265)
T ss_pred HHHHHHHHHHcCCchhhhHH-HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCE
Confidence 45677888888874211111 1223456999999999999999999999999999999999999999999999976 689
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+++|++ +++.+++|++++|++|+++..|+.++.
T Consensus 213 iiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 213 ILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred EEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999995 578899999999999999999988765
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.80 E-value=3.8e-19 Score=169.66 Aligned_cols=84 Identities=60% Similarity=1.043 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+++|++++|++|++
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 69999999999999999999999999999999999999999999999888999999999986678889999999999999
Q ss_pred EEEe
Q 009738 114 IYFG 117 (527)
Q Consensus 114 ~~~G 117 (527)
++.|
T Consensus 191 ~~~~ 194 (194)
T cd03213 191 IYFG 194 (194)
T ss_pred EecC
Confidence 8764
No 256
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=3.6e-19 Score=169.56 Aligned_cols=84 Identities=50% Similarity=0.944 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC-Ce
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN-GE 112 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~-G~ 112 (527)
+||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++ |+
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 69999999999999999999999999999999999999999999999888999999999986457889999999998 99
Q ss_pred EEEEe
Q 009738 113 TIYFG 117 (527)
Q Consensus 113 ~~~~G 117 (527)
+++.|
T Consensus 188 i~~~g 192 (192)
T cd03232 188 TVYFG 192 (192)
T ss_pred EEeCC
Confidence 99865
No 257
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.79 E-value=4.5e-19 Score=177.92 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~------~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++.+.++.+||.+..+...+. ...+.||||||||+++||+++.+|+|++|||||+|||+.+...+.+.|+++.
T Consensus 106 ~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~ 185 (275)
T cd03289 106 EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185 (275)
T ss_pred HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc
Confidence 4567788899998766554331 1224599999999999999999999999999999999999999999999875
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+++|||+++|++ +.+. .|||+++|++|++++.|+++++..
T Consensus 186 -~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 186 -ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred -CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 479999999997 4565 499999999999999999988754
No 258
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.9e-19 Score=185.55 Aligned_cols=114 Identities=28% Similarity=0.433 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCccccc-------ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAE-------TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~-------~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++.+-++++.+||++... |.+|+ .-+.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+
T Consensus 441 DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 441 DEELWAALQQVGLEKLLESAPDGLNTWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred HHHHHHHHHHcCHHHHHHhChhhhhchhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence 466778888888876544 34554 3467999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
-.+ |+|+|++||+... .+.||||++|++|+++.+|...+..+
T Consensus 520 ~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 520 HAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred Hhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeecCCHHhhhc
Confidence 554 8999999999753 56799999999999999999987653
No 259
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.79 E-value=5.1e-19 Score=196.34 Aligned_cols=113 Identities=25% Similarity=0.411 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++..++.+ -.||.+|+. -..||||||||++||||++++|++|+||||||+||+.+..++.+.|++
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 355666677666543 347888764 356999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+. +++|+|+++|+++ ..+.+|+|++|++|+++..|+.++..
T Consensus 531 ~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 531 AS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred Hh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHHHHH
Confidence 85 4799999999974 45679999999999999999988764
No 260
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.4e-19 Score=169.72 Aligned_cols=89 Identities=37% Similarity=0.636 Sum_probs=80.2
Q ss_pred CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCChhHHHhhcCeEEE
Q 009738 29 NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 29 ~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++||..+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 3445679999999999999999999999999999999999999999999999876 678888877766788999999999
Q ss_pred EeCCeEEEEe
Q 009738 108 LSNGETIYFG 117 (527)
Q Consensus 108 l~~G~~~~~G 117 (527)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998764
No 261
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=5.3e-19 Score=159.47 Aligned_cols=105 Identities=25% Similarity=0.345 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
.+..+.+.+.|+.+||.+..+. +|.+|||||+|||+||||++..|++||-||||.+||..+..+|.+++-.+.++
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre 195 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE 195 (228)
T ss_pred ccHHHHHHHHHHHhCccccccc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh
Confidence 4456678899999999876654 45679999999999999999999999999999999999999999999999875
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEE
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~ 115 (527)
|.|.|+++|||. +..-|||.+-|.+|+++.
T Consensus 196 ~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 196 RGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 999999999974 778899999999999864
No 262
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.2e-18 Score=172.81 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+++.++++.+||.+ ..+++. +.||||||||+.||++|+.+ |++++|||||+|||+..+..+.+.|++++++
T Consensus 147 ~~~~~~L~~vgL~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~ 221 (261)
T cd03271 147 ARKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK 221 (261)
T ss_pred HHHHHHHHHcCCchhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 45678899999986 355554 46999999999999999996 7999999999999999999999999999988
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeCh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDA 119 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~ 119 (527)
|.|+|+++|++. .+ +.+|+++.| ++|++++.|++
T Consensus 222 g~tvIiitH~~~-~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 222 GNTVVVIEHNLD-VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999974 44 579999999 89999999874
No 263
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.78 E-value=8.6e-19 Score=194.32 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=97.6
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++..|+.+ -.||.+|+. -+.||||||||++|||+|+++|++++||||||+||+.+...+.+.|++
T Consensus 447 ~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~ 525 (582)
T PRK11176 447 REQIEEAARMAYAMDFINKMDNGLDTVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccCceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 456777777777543 357888764 357999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+. +++|+|+++|+++ ..+.||+|++|++|+++..|+.++..
T Consensus 526 ~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 526 LQ-KNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 75 4699999999973 56779999999999999999988764
No 264
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.78 E-value=1e-18 Score=173.67 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+.+++++++++.+||++..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++++++
T Consensus 115 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~ 189 (255)
T cd03236 115 DERGKLDELVDQLELRHVLDRNID-----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189 (255)
T ss_pred HHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 345678899999999877766554 699999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
+|+|+++|++ ..+.++||++++|+ |++.+.|
T Consensus 190 ~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 190 NYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 9999999996 57888999999994 5565544
No 265
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.6e-18 Score=159.61 Aligned_cols=119 Identities=23% Similarity=0.367 Sum_probs=105.0
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.++.+++.+.+..+||++..++.+- +|||||||||.|||||+.+|++|+||||++.||..+++++.++|-++
T Consensus 104 i~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldl 178 (259)
T COG4525 104 IEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDL 178 (259)
T ss_pred CCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988776664 59999999999999999999999999999999999999999999998
Q ss_pred Hh-CCCEEEEEecCChhHHHhhcCeEEEEe--CCeEEEEeChhhHHHH
Q 009738 81 AL-DGRIVVCSIHQPSSHLFYLFDDLLLLS--NGETIYFGDAKMAVKF 125 (527)
Q Consensus 81 ~~-~~~tvi~~~H~~~~~i~~~~d~v~~l~--~G~~~~~G~~~~~~~~ 125 (527)
.+ .|+.+++++|+. +|..-+++|+++|+ .|+++..-+++-...|
T Consensus 179 w~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 179 WQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 76 499999999995 67788899999998 5899887776644443
No 266
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.78 E-value=1.4e-18 Score=168.31 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=94.1
Q ss_pred HHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 009738 12 ETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91 (527)
Q Consensus 12 ~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~ 91 (527)
++.+.++|+...+++++ +||||||||+++|++++.+|++++|||||+++|+.++..+.+.+.+..+ ++++|+++
T Consensus 87 ~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-~~~ii~vs 160 (213)
T PRK15177 87 FCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-QKGLIVLT 160 (213)
T ss_pred HHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-CCcEEEEE
Confidence 44456788777777665 5999999999999999999999999999999999999999998865443 36799999
Q ss_pred cCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHh
Q 009738 92 HQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (527)
Q Consensus 92 H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~ 127 (527)
|++ .++..++|++++|++|++++.|+.++..+++.
T Consensus 161 H~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 161 HNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred CCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 996 46888999999999999999999998877654
No 267
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.78 E-value=1e-18 Score=162.13 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
+||||||||+++|++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ +++.+.+|++++|++|++
T Consensus 82 qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 82 QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRV 160 (163)
T ss_pred ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 3999999999999999999999999999999999999999999999988899999999996 568889999999999998
Q ss_pred EE
Q 009738 114 IY 115 (527)
Q Consensus 114 ~~ 115 (527)
++
T Consensus 161 ~~ 162 (163)
T cd03216 161 VG 162 (163)
T ss_pred Ee
Confidence 64
No 268
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.1e-18 Score=171.31 Aligned_cols=90 Identities=30% Similarity=0.458 Sum_probs=81.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|+++|++. ++. .+|++++|++
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~ 210 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKD 210 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEEC
Confidence 3567999999999999999999999999999999999999999999999987 899999999974 555 4999999999
Q ss_pred CeEEEEeChhhHH
Q 009738 111 GETIYFGDAKMAV 123 (527)
Q Consensus 111 G~~~~~G~~~~~~ 123 (527)
|+++..|+.++..
T Consensus 211 g~i~~~~~~~~~~ 223 (236)
T cd03253 211 GRIVERGTHEELL 223 (236)
T ss_pred CEEEeeCCHHHHh
Confidence 9999988876543
No 269
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.78 E-value=1.2e-18 Score=196.71 Aligned_cols=111 Identities=25% Similarity=0.295 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..|+.+. .||.+|+. -.+||||||||++||||++++|++++||||||+||+.+..++.+.|++
T Consensus 555 ~e~i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 555 LDEAWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 3567777888877643 36777753 367999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.++..
T Consensus 634 ~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 634 L---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred h---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHHHHH
Confidence 6 589999999974 45679999999999999999988764
No 270
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.78 E-value=1.9e-18 Score=161.85 Aligned_cols=100 Identities=25% Similarity=0.354 Sum_probs=85.7
Q ss_pred HHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 11 EETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 11 ~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
.+.++.++|... .++++ +.||||||||++||++++.+ |++++|||||+|||+.++..+.+.|++++++|+||
T Consensus 68 ~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tv 142 (176)
T cd03238 68 LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142 (176)
T ss_pred HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 357889998753 55544 56999999999999999999 99999999999999999999999999998789999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
|+++|++. ++ +.+|++++|.+|+..+.|
T Consensus 143 IivSH~~~-~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 143 ILIEHNLD-VL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred EEEeCCHH-HH-HhCCEEEEECCCCCCCCc
Confidence 99999974 44 679999999776554333
No 271
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.3e-18 Score=164.95 Aligned_cols=108 Identities=24% Similarity=0.402 Sum_probs=98.6
Q ss_pred HHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009738 10 VEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (527)
Q Consensus 10 v~~~l~~l~-L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tv 87 (527)
++++.+.|- |.+.++++.|+ |||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++ |.||
T Consensus 116 ~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 116 LEEVYELFPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred HHHHHHHChhHHHHhcCcccC-----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEE
Confidence 777888874 88888888885 9999999999999999999999999999999999999999999999976 6688
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++.++ .....+++||.++|.+|++++.|+.++..
T Consensus 191 lLVEQn-~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 191 LLVEQN-ARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred EEEecc-HHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 888777 56899999999999999999999998765
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=1.9e-18 Score=172.13 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=81.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
..+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.++++. ++.|+|+++|++. .+.. +|++++|++
T Consensus 153 ~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~ 229 (257)
T cd03288 153 GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSR 229 (257)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEEC
Confidence 456799999999999999999999999999999999999999999999975 4899999999975 4554 999999999
Q ss_pred CeEEEEeChhhHH
Q 009738 111 GETIYFGDAKMAV 123 (527)
Q Consensus 111 G~~~~~G~~~~~~ 123 (527)
|+++..|++++..
T Consensus 230 G~i~~~g~~~~~~ 242 (257)
T cd03288 230 GILVECDTPENLL 242 (257)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999887654
No 273
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.77 E-value=1.1e-18 Score=189.46 Aligned_cols=106 Identities=19% Similarity=0.357 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.+++++++++.+||.+ ..+++++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++++
T Consensus 377 ~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~ 451 (490)
T PRK10938 377 QQKLAQQWLDILGIDKRTADAPFH-----SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEG 451 (490)
T ss_pred HHHHHHHHHHHcCCchhhccCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcC
Confidence 3467889999999987 6776665 599999999999999999999999999999999999999999999998876
Q ss_pred C-EEEEEecCChhHHHh-hcCeEEEEeCCeEEEEe
Q 009738 85 R-IVVCSIHQPSSHLFY-LFDDLLLLSNGETIYFG 117 (527)
Q Consensus 85 ~-tvi~~~H~~~~~i~~-~~d~v~~l~~G~~~~~G 117 (527)
. |||+++|++ +++.+ ++|++++|++|+++..-
T Consensus 452 ~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 452 ETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CcEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 4 699999996 46766 68999999999988754
No 274
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.77 E-value=1.7e-18 Score=192.32 Aligned_cols=113 Identities=23% Similarity=0.345 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++..|+.+ -.||.+|+ ....||||||||++|||+|+.+|++++||||||+||+.+..++.+.|++
T Consensus 443 d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~ 521 (592)
T PRK10790 443 EEQVWQALETVQLAELARSLPDGLYTPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA 521 (592)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456788888888764 34677765 3457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.+ ++|+|+++|++. ....+|++++|++|+++..|+.++..
T Consensus 522 ~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 522 VRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 865 599999999973 46679999999999999999998765
No 275
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.2e-18 Score=161.80 Aligned_cols=122 Identities=30% Similarity=0.431 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..+++++.++.+++.+ .+++.+.. |+|||||||..|+..++.+|++.+||||-||||..+-..+.+.+++++.+
T Consensus 118 ~~~~~~~e~~~~l~~~~~~l~R~vN~----GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~ 193 (251)
T COG0396 118 EFIKELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE 193 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHhhcccCC----CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC
Confidence 56778999999999987 67777654 89999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCChhHHHhhc--CeEEEEeCCeEEEEeChhhHHHHHhhcCCCC
Q 009738 84 GRIVVCSIHQPSSHLFYLF--DDLLLLSNGETIYFGDAKMAVKFFAEAGFPC 133 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~--d~v~~l~~G~~~~~G~~~~~~~~f~~~g~~~ 133 (527)
|.+++++||+. ++.++. |++.+|.+|+|+..|.+ ++.+++++.|+.|
T Consensus 194 ~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 194 GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999994 577777 99999999999999999 7888888888765
No 276
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.77 E-value=1.9e-18 Score=190.10 Aligned_cols=98 Identities=29% Similarity=0.510 Sum_probs=87.4
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 23 ~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
.||.+|+ ..+.||||||||++|||+++++|++++|||||+|||+.++.++.+.|+++..+|+|+|+++|+++ ..+.+
T Consensus 444 l~t~~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~ 520 (544)
T TIGR01842 444 YDTVIGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCV 520 (544)
T ss_pred cccccCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhC
Confidence 3566654 35679999999999999999999999999999999999999999999999777899999999974 45679
Q ss_pred CeEEEEeCCeEEEEeChhhHH
Q 009738 103 DDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 103 d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|++++|++|++++.|+.++..
T Consensus 521 d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 521 DKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred CEEEEEECCEEEeeCCHHHHh
Confidence 999999999999999987653
No 277
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.77 E-value=1.6e-18 Score=166.34 Aligned_cols=96 Identities=26% Similarity=0.389 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.+||.+..++++. .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 103 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 177 (201)
T cd03231 103 DEQVEEALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGM 177 (201)
T ss_pred HHHHHHHHHHcCChhhhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4568899999999887776654 69999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCChhHHHhhcCeEEEE
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l 108 (527)
+|+++|++. ++...+|+++++
T Consensus 178 iii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 178 VVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred EEEEecCch-hhhhccceeEec
Confidence 999999975 677799999887
No 278
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.77 E-value=2e-18 Score=190.90 Aligned_cols=114 Identities=29% Similarity=0.469 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHcCCccc------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 6 INDIVEETIIKMGLQAC------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
.++++.+.++..++.+. .||.+|+. .+.||||||||++|||+++++|++++|||||++||+.+...+.+.|++
T Consensus 442 ~~~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~ 520 (574)
T PRK11160 442 SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE 520 (574)
T ss_pred CHHHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 34678888999998765 35667653 457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+. +++|+|+++|+++ .+ ..+|++++|++|+++..|+.++..
T Consensus 521 ~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 521 HA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred Hc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHHHHH
Confidence 86 4799999999985 34 569999999999999999988764
No 279
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.3e-18 Score=197.35 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=92.3
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH
Q 009738 18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (527)
Q Consensus 18 ~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~ 97 (527)
.|.+-.||.+|+..+. ||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+.. +|+|+|+++|+.+ .
T Consensus 474 ~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-t 550 (1228)
T KOG0055|consen 474 KLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-T 550 (1228)
T ss_pred hhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-h
Confidence 4567778999986665 99999999999999999999999999999999999999999998755 5789999999964 5
Q ss_pred HHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 98 LFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 98 i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+.+ +|++++|++|++++.|+.+|...
T Consensus 551 Irn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 551 IRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred hhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 666 99999999999999999998764
No 280
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.77 E-value=1.8e-18 Score=191.09 Aligned_cols=100 Identities=28% Similarity=0.460 Sum_probs=89.6
Q ss_pred ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHh
Q 009738 21 ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY 100 (527)
Q Consensus 21 ~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~ 100 (527)
+-.||.+|+ .-..||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+++++|+++ .+.+
T Consensus 453 ~g~dt~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~ 529 (567)
T COG1132 453 DGYDTIVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN 529 (567)
T ss_pred ccccceecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh
Confidence 357899984 445799999999999999999999999999999999999999999999887 5689999999984 4555
Q ss_pred hcCeEEEEeCCeEEEEeChhhHHH
Q 009738 101 LFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 101 ~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+|+|++|++|+++..|+.++...
T Consensus 530 -aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 530 -ADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred -CCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999998764
No 281
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=1.6e-18 Score=166.66 Aligned_cols=97 Identities=22% Similarity=0.303 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
..++++++++.+||.+..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.
T Consensus 106 ~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 180 (204)
T PRK13538 106 DDEALWEALAQVGLAGFEDVPVR-----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGG 180 (204)
T ss_pred HHHHHHHHHHHcCCHHHhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCC
Confidence 34678899999999887776654 5999999999999999999999999999999999999999999999988889
Q ss_pred EEEEEecCChhHHHhhcCeEEEE
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
|+|+++|++ .++....+|++++
T Consensus 181 tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 181 MVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred EEEEEecCh-hhhccCCceEEec
Confidence 999999996 4676766777776
No 282
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.7e-18 Score=183.23 Aligned_cols=113 Identities=27% Similarity=0.415 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCcccc------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACA------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++.+.++++..||.+.. |+.+|+ .-++|||||+|||++|||++.+++++++||||++||.++.+.+.+.|.++
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence 56777888888876554 455554 44689999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+++ +|+++++|++. ...-+|+|++|++|+++..|..++..
T Consensus 503 ~~~-ktvl~itHrl~--~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 503 AKQ-KTVLVITHRLE--DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HhC-CeEEEEEcChH--HHhcCCEEEEecCCceeccCCHHHHh
Confidence 887 99999999964 45669999999999999999998764
No 283
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.77 E-value=2.5e-18 Score=167.19 Aligned_cols=108 Identities=19% Similarity=0.335 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCccccccc------ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACAETK------IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~------i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++.+.++.+++.+..++. ..+..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 107 EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 4566677777876654321 0123456899999999999999999999999999999999999999999999986
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
+ +.|+|+++|++. ++.. +|++++|++|++++.|+
T Consensus 187 ~-~~tii~~sh~~~-~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 187 K-DCTVLTIAHRLD-TIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred C-CCEEEEEeCCHH-HHhh-CCEEEEEECCeEEecCC
Confidence 5 689999999974 5654 99999999999998875
No 284
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.77 E-value=2.9e-18 Score=167.15 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..+++.++++.+||.+. .+.++ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 198 (224)
T TIGR02324 124 AARARARELLARLNIPERLWHLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR 198 (224)
T ss_pred HHHHHHHHHHHHcCCchhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 445678889999999753 34444 469999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
|.|+|+++|++ +.+..++|+++.+.
T Consensus 199 g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 199 GAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred CCEEEEEeCCH-HHHHHhcceeEecC
Confidence 99999999994 56778999998763
No 285
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.77 E-value=1.9e-18 Score=168.76 Aligned_cols=105 Identities=24% Similarity=0.324 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
+++++++++.+||. ...++++ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |
T Consensus 114 ~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (225)
T PRK10247 114 PAIFLDDLERFALPDTILTKNI-----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 (225)
T ss_pred HHHHHHHHHHcCCChHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 35678899999995 4555555 469999999999999999999999999999999999999999999999875 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEe-CCeEEEEeC
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLS-NGETIYFGD 118 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~-~G~~~~~G~ 118 (527)
.|+|+++|++. ++. .+|++++|. ++..+.+|.
T Consensus 189 ~tvii~sh~~~-~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 189 IAVLWVTHDKD-EIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CEEEEEECChH-HHH-hCCEEEEEecccchHhhhh
Confidence 99999999974 564 699999995 555555554
No 286
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=2.7e-18 Score=166.29 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++++++.++.++|.+..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|
T Consensus 115 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 115 KQMPGSALAIVGLAGYEDTLVR-----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGA 189 (214)
T ss_pred HHHHHHHHHHcCChhhccCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 4567789999999887777664 59999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
+|+++|++ +++.+++|++++++.
T Consensus 190 iii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 190 ALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred EEEEecCh-hhhhhhcceEEEEee
Confidence 99999996 579999999999864
No 287
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.76 E-value=2.7e-18 Score=194.57 Aligned_cols=112 Identities=20% Similarity=0.323 Sum_probs=95.7
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..|+.+ -.||.+|+. -.+||||||||++|||+++++|++++||||||+||+.+..++.+.|++
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~-G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAEG-GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceeccC-CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence 455667777777654 346777753 367999999999999999999999999999999999999999999986
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.++|+|+++|+++ ....+|++++|++|+++..|+.++..+
T Consensus 661 ---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 661 ---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 5899999999974 456699999999999999999987754
No 288
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=1.7e-18 Score=163.53 Aligned_cols=78 Identities=26% Similarity=0.471 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++ +++.+++|++++|++|++
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999999999987889999999996 578999999999999974
No 289
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.76 E-value=2.3e-18 Score=163.62 Aligned_cols=87 Identities=36% Similarity=0.531 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++++++++.+||.+..+++++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~ 176 (190)
T TIGR01166 102 AEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176 (190)
T ss_pred HHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc
Confidence 3455678899999999887777654 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCh
Q 009738 84 GRIVVCSIHQPS 95 (527)
Q Consensus 84 ~~tvi~~~H~~~ 95 (527)
|+|||+++|++.
T Consensus 177 ~~tili~sH~~~ 188 (190)
T TIGR01166 177 GMTVVISTHDVD 188 (190)
T ss_pred CCEEEEEeeccc
Confidence 999999999963
No 290
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.76 E-value=3.1e-18 Score=189.49 Aligned_cols=113 Identities=25% Similarity=0.354 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++..||.+. .||.+|+. -+.||||||||++|||+++.+|++++||||||+||+.+...+.+.|++
T Consensus 436 ~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~ 514 (571)
T TIGR02203 436 RAEIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER 514 (571)
T ss_pred HHHHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 4567788888887543 46777754 357999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ +++|+|+++|++ ...+.||++++|++|+++..|+.++..
T Consensus 515 ~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 515 LM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred Hh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 75 469999999997 457889999999999999999988764
No 291
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.3e-18 Score=161.30 Aligned_cols=78 Identities=35% Similarity=0.545 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++ .++.+.+|++++|++|++
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999988889999999996 478889999999999974
No 292
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.76 E-value=3.2e-18 Score=193.50 Aligned_cols=114 Identities=26% Similarity=0.434 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+ -.||.+|+. -..||||||||++|||+++.+|++++||||||+||+.+..++.+.|++
T Consensus 568 ~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~-G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~ 646 (694)
T TIGR03375 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGER-GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR 646 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcccccceecCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 455667777776654 346777753 457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 647 ~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 647 WLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 864 699999999974 457899999999999999999887654
No 293
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.76 E-value=2.7e-18 Score=167.57 Aligned_cols=96 Identities=31% Similarity=0.397 Sum_probs=83.5
Q ss_pred HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 10 VEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 10 v~~~l~~l--~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+++.++.+ |+++..++.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|+
T Consensus 129 ~~~~l~~l~~gl~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~ti 202 (226)
T cd03248 129 AHSFISELASGYDTEVGEKG-----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202 (226)
T ss_pred cHHHHHhccccccchhhcCC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEE
Confidence 45677777 7766555544 56999999999999999999999999999999999999999999999875 6899
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
|+++|++. ++. .+|++++|++|++
T Consensus 203 i~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 203 LVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred EEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999975 565 5999999999974
No 294
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.76 E-value=5.2e-18 Score=179.08 Aligned_cols=112 Identities=19% Similarity=0.367 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.++.++++.++|+.+|+....++++++ ||+||||.|+||+|+..++++++|||||+.|+...+..+.+.+++|+
T Consensus 118 d~~~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 118 DRKAMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred CHHHHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4577889999999999996557888875 99999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeCh
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~ 119 (527)
++|.++|.++|. .+|++++|||+.+|.+|+.+..++.
T Consensus 193 ~~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 193 AQGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred hCCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 999999999999 5799999999999999999998883
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.76 E-value=2.8e-18 Score=160.71 Aligned_cols=77 Identities=29% Similarity=0.517 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++. .+ +.+|++++|++|++
T Consensus 97 LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999888999999999974 55 57999999999974
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=4.3e-18 Score=186.60 Aligned_cols=108 Identities=22% Similarity=0.343 Sum_probs=94.0
Q ss_pred HHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+||.+.. +.++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~ 203 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNS 203 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCC
Confidence 46788999999997543 3334 46999999999999999999999999999999999999999999863 589
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeE-EEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGET-IYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~-~~~G~~~~~~ 123 (527)
|||+++|++ +.+.++||++++|++|++ ++.|++++..
T Consensus 204 tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 204 TMIIISHDR-HFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred eEEEEeCCH-HHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 999999996 578899999999999999 4888877554
No 297
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.76 E-value=4e-18 Score=189.16 Aligned_cols=113 Identities=27% Similarity=0.390 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.+.++..++.+ -.||.+|+ ..+.||||||||++|||+|+.+|++++||||||+||+.+...+.+.|++
T Consensus 438 d~~i~~al~~~~l~~~i~~lp~gldt~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~ 516 (588)
T PRK13657 438 DEEMRAAAERAQAHDFIERKPDGYDTVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE 516 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhCcccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 445666777777654 34666765 3457999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+. +++|+|+++|+++ ..+.+|++++|++|+++..|+.++..
T Consensus 517 ~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 517 LM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred Hh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 75 4799999999974 46789999999999999999987654
No 298
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.76 E-value=6e-18 Score=189.25 Aligned_cols=113 Identities=26% Similarity=0.355 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.++++.++++.+||.+..|+..+ .||||||||+.|||+|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 119 ~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~ 193 (648)
T PRK10535 119 KQRLLRAQELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDR 193 (648)
T ss_pred HHHHHHHHHHHHHCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc
Confidence 4556788999999999887777665 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+|+++|++. .+ +.|||+++|++|++++.|++++..
T Consensus 194 g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 194 GHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCccccc
Confidence 999999999964 44 579999999999999999998764
No 299
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.76 E-value=4.6e-18 Score=192.65 Aligned_cols=113 Identities=23% Similarity=0.349 Sum_probs=96.5
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+ -.||.+|+ ...+||||||||++||||++++|++|+||||||+||+.+...+.+.|++
T Consensus 578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 578 QDEIWAACEIAEIKDDIENMPLGYQTELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred HHHHHHHHHHhCCHHHHHhcccccCcEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 355677777777654 34777775 3467999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+ +++|+|+++|+++ ..+.+|++++|++|+++..|+.++..+
T Consensus 657 ~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 657 L--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred h--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 5 4799999999974 457799999999999999999887653
No 300
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.75 E-value=5.5e-18 Score=191.54 Aligned_cols=114 Identities=24% Similarity=0.388 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+. .||.+++. ..+||||||||++|||+++++|++++|||||++||+.+..++.+.|++
T Consensus 560 ~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 638 (694)
T TIGR01846 560 FEHVIHAAKLAGAHDFISELPQGYNTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE 638 (694)
T ss_pred HHHHHHHHHHcChHHHHHhCcCccCcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 3455666666665443 46777653 468999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+. .++|+|+++|+++ .+ +.+|++++|++|++++.|+.++..+
T Consensus 639 ~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 639 IC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred Hh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 85 5799999999974 34 5699999999999999999887643
No 301
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.75 E-value=3.9e-18 Score=189.72 Aligned_cols=101 Identities=29% Similarity=0.457 Sum_probs=90.0
Q ss_pred cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHH
Q 009738 20 QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (527)
Q Consensus 20 ~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~ 99 (527)
..-.||.+|+ .-.+||||||||++|||+|+++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ..
T Consensus 596 P~gy~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti 671 (709)
T COG2274 596 PMGYDTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TI 671 (709)
T ss_pred cccccccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--Hh
Confidence 3445677775 3457999999999999999999999999999999999999999999999765 599999999974 67
Q ss_pred hhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 100 YLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 100 ~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+.+||+++|++|+++.+|+.++..+
T Consensus 672 ~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 672 RSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred hhccEEEEccCCceeccCCHHHHHH
Confidence 8899999999999999999998765
No 302
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.75 E-value=6.4e-18 Score=187.23 Aligned_cols=112 Identities=27% Similarity=0.334 Sum_probs=92.0
Q ss_pred HHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 9 IVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 9 ~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++.+.++..++.+ -.|+.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.
T Consensus 440 ~~~~a~~~~~~~~~i~~l~~g~~t~~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~ 518 (585)
T TIGR01192 440 EVYEAAKAAAAHDFILKRSNGYDTLVGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR 518 (585)
T ss_pred HHHHHHHHhCcHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh
Confidence 3444455544433 23555654 356799999999999999999999999999999999999999999999874
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+++|+|+++|+++ .+ +.+|++++|++|+++..|+.++..+
T Consensus 519 -~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 519 -KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred -CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHHHHH
Confidence 4899999999974 44 6699999999999999999876643
No 303
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.75 E-value=3.3e-18 Score=196.70 Aligned_cols=120 Identities=23% Similarity=0.431 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.++.++.++++++.+||.+.+|++++. +|||+|||+++|.+++.+|++++|||||+|+||.++..+.+.+++++
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~ 745 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLR 745 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchhh-----CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4568888899999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHh
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFA 127 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~ 127 (527)
++|+.+|+|+|. ++|...+|||+.+|.+|++...|++++....|.
T Consensus 746 k~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 746 KNGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred hcCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhcC
Confidence 988899999999 689999999999999999999999999987664
No 304
>PRK13409 putative ATPase RIL; Provisional
Probab=99.75 E-value=4.9e-18 Score=187.24 Aligned_cols=104 Identities=24% Similarity=0.353 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tv 87 (527)
.++++++.++|.+..+++++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 507 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVK-----DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 56889999999887777765 59999999999999999999999999999999999999999999999875 8999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEeCh
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~ 119 (527)
|+++||+ .++..++||+++|++ ++...|..
T Consensus 508 iivsHD~-~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 508 LVVDHDI-YMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred EEEeCCH-HHHHHhCCEEEEEcC-cceeeeec
Confidence 9999995 578899999999964 77777763
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=4.9e-18 Score=186.19 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+|+. +..+++++ +||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++ +.
T Consensus 415 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~ 486 (530)
T PRK15064 415 EQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EG 486 (530)
T ss_pred HHHHHHHHHHcCCChhHhcCccc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CC
Confidence 45688999999994 56666665 59999999999999999999999999999999999999999999886 45
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~ 122 (527)
|||+++|++ +++..+||++++|++|+++ +.|++++.
T Consensus 487 tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 487 TLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 999999996 5788999999999999998 88887754
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=5e-18 Score=159.66 Aligned_cols=83 Identities=29% Similarity=0.502 Sum_probs=76.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
++.||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++ ++.|+|+++|++. ++. .+|++++|++|
T Consensus 96 ~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~~~~l~~g 172 (178)
T cd03247 96 GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GIE-HMDKILFLENG 172 (178)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-hCCEEEEEECC
Confidence 56799999999999999999999999999999999999999999999986 5899999999975 554 69999999999
Q ss_pred eEEEEe
Q 009738 112 ETIYFG 117 (527)
Q Consensus 112 ~~~~~G 117 (527)
++++.|
T Consensus 173 ~i~~~~ 178 (178)
T cd03247 173 KIIMQG 178 (178)
T ss_pred EEEecC
Confidence 998754
No 307
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=7.1e-18 Score=186.38 Aligned_cols=112 Identities=22% Similarity=0.363 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++++.++..++.+ -.||.+|+. ...||||||||++|||+++++|++++|||||+|||+.+..++.+.|+++
T Consensus 419 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 419 QEIEHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred HHHHHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 45566666666543 346667653 4579999999999999999999999999999999999999999999997
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
. +++|+|+++|++. ..+.+|++++|++|+++..|+.++..
T Consensus 498 ~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 498 G-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred h-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHH
Confidence 5 5899999999974 35669999999999999999988664
No 308
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=6.1e-18 Score=162.91 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=78.1
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.++.||||||||++|||+++.+|++++|||||+|||+.++..+.+.|+++. +|.|+|+++|++. ++.. +|++++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~ 198 (207)
T cd03369 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDA 198 (207)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEEC
Confidence 456799999999999999999999999999999999999999999999985 4899999999975 4555 999999999
Q ss_pred CeEEEEeCh
Q 009738 111 GETIYFGDA 119 (527)
Q Consensus 111 G~~~~~G~~ 119 (527)
|+++..|++
T Consensus 199 g~i~~~g~~ 207 (207)
T cd03369 199 GEVKEYDHP 207 (207)
T ss_pred CEEEecCCC
Confidence 999987763
No 309
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.7e-18 Score=159.29 Aligned_cols=77 Identities=34% Similarity=0.515 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++ .++.+.+|++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999887 89999999996 57888999999999985
No 310
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.75 E-value=7.1e-18 Score=190.86 Aligned_cols=112 Identities=24% Similarity=0.383 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+. .||.+|+. -.+||||||||++|||+++++|++++||||||+||+.+.+.+.+ ..
T Consensus 584 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~- 660 (711)
T TIGR00958 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR- 660 (711)
T ss_pred HHHHHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-
Confidence 4567778888776543 56777753 45799999999999999999999999999999999999999888 22
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
..+++|+|+++|+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 661 -~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 661 -SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred -ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 236799999999974 456799999999999999999887653
No 311
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=7.8e-18 Score=175.99 Aligned_cols=114 Identities=30% Similarity=0.472 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
.++|-++.+..|+. +-..|.+|++. +.|||||||||++||+++.||+|+++|||||.||..+..++++.+.+
T Consensus 454 ~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 454 DEEVVEACKRAGLHDVISRLPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred HHHHHHHHHHcCcHHHHHhccccchhhHhhcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence 34566667776654 34456677643 45999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
...|+|+|++.|+. +...-||+|++|++|++...|+.++...
T Consensus 533 -~~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 533 -VMSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred -hcCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 55689999999995 4677799999999999999999998765
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.74 E-value=1e-17 Score=157.07 Aligned_cols=87 Identities=24% Similarity=0.403 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-~tvi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
||||||||++||++++.+|++++|||||+|||+.++..+.+.++++++++ .|+|+++|++ .++.+++|++++|+++-.
T Consensus 72 LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999998775 8999999995 578889999999998876
Q ss_pred EEE--eChhhH
Q 009738 114 IYF--GDAKMA 122 (527)
Q Consensus 114 ~~~--G~~~~~ 122 (527)
++. |+|...
T Consensus 151 ~~~~~~~~~~~ 161 (177)
T cd03222 151 VYGIASQPKGT 161 (177)
T ss_pred cceeccCCcch
Confidence 655 665533
No 313
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.74 E-value=1.1e-17 Score=184.41 Aligned_cols=106 Identities=27% Similarity=0.371 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
.++++++++.+||.. .+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|
T Consensus 142 ~~~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~t 212 (556)
T PRK11819 142 DSQLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GT 212 (556)
T ss_pred HHHHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---Ce
Confidence 457888999999953 565554 699999999999999999999999999999999999999999999873 59
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMA 122 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~ 122 (527)
||+++|++ +++..++|++++|++|+++ +.|+.++.
T Consensus 213 viiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 213 VVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred EEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 99999996 6788999999999999986 78877653
No 314
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.74 E-value=1.4e-17 Score=184.34 Aligned_cols=113 Identities=26% Similarity=0.392 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.+.++..|+.+. .|+.+|+ ..+.||||||||+++||+++.+|++++||||||+||+.+++.+.+.|++
T Consensus 443 ~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~ 521 (576)
T TIGR02204 443 DEEVEAAARAAHAHEFISALPEGYDTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET 521 (576)
T ss_pred HHHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 4567777777776532 3566665 3457999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+. +++|+|+++|++. ....+|+++.|++|+++..|+.++..
T Consensus 522 ~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 522 LM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred Hh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHHHHH
Confidence 85 4799999999973 45779999999999999999987653
No 315
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.2e-17 Score=161.08 Aligned_cols=95 Identities=25% Similarity=0.396 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||.+..+++.+ .||||||||++||++++.+|++++|||||+|||+.++.++.+.|++++++|+|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (207)
T PRK13539 106 LDIAAALEAVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180 (207)
T ss_pred HHHHHHHHHcCCHHHHcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 458899999999877666654 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeC
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
|+++|++ .++.. |+++-++.
T Consensus 181 ii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 181 IAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred EEEeCCc-hhhcc--CcEEeecC
Confidence 9999996 45555 88877743
No 316
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=186.22 Aligned_cols=109 Identities=27% Similarity=0.366 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
..+++.++++.+++. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .
T Consensus 406 ~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~- 477 (638)
T PRK10636 406 LEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E- 477 (638)
T ss_pred hHHHHHHHHHHcCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-
Confidence 345788999999996 35677665 59999999999999999999999999999999999999999999987 3
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~~ 123 (527)
.|||+++||+ ..+..+||++++|++|+++ +.|+.++..
T Consensus 478 gtvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 478 GALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CeEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 4999999995 6789999999999999997 888887653
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=186.33 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.+++++++++.+|+. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +
T Consensus 125 ~~~~~~~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~ 196 (638)
T PRK10636 125 IRSRAASLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---Q 196 (638)
T ss_pred hHHHHHHHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---C
Confidence 346788999999997 56677776 49999999999999999999999999999999999999999998875 5
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhh
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~ 121 (527)
.|||+++|+. ..+.++||++++|++|++. |.|+.+.
T Consensus 197 ~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 197 GTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred CeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 6999999995 6789999999999999996 5676553
No 318
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1e-17 Score=180.80 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=92.6
Q ss_pred CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH
Q 009738 18 GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (527)
Q Consensus 18 ~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~ 97 (527)
++.+-.||.+|++.. .||||||||++|||||++||+||||||.||.||+.+...+.+.|.++.++ +|||++.|..+
T Consensus 589 ~~p~gY~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLS-- 664 (716)
T KOG0058|consen 589 NFPDGYNTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLS-- 664 (716)
T ss_pred hCccccccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhh--
Confidence 567789999997443 59999999999999999999999999999999999999999999988766 99999999964
Q ss_pred HHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 98 LFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 98 i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
..+.+|+|+++++|+++..|+.+|..+
T Consensus 665 TV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 665 TVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HhhhccEEEEEcCCeEEecccHHHHhh
Confidence 456799999999999999998887653
No 319
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.73 E-value=1.1e-17 Score=159.90 Aligned_cols=92 Identities=25% Similarity=0.419 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||.+..+++++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ti 180 (198)
T TIGR01189 106 RTIEDALAAVGLTGFEDLPAA-----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180 (198)
T ss_pred HHHHHHHHHcCCHHHhcCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 467889999999987777665 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEE
Q 009738 88 VCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~ 107 (527)
|+++|++.+ -.+++++.
T Consensus 181 i~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 181 LLTTHQDLG---LVEARELR 197 (198)
T ss_pred EEEEccccc---ccceEEee
Confidence 999999743 23566654
No 320
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.73 E-value=8.8e-18 Score=154.73 Aligned_cols=113 Identities=23% Similarity=0.347 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
.+-+++++++|...||++.++...+. ||.||||++.|++.++++|++|++|||++|+-.....+.-++|++++..
T Consensus 122 ~~e~~ride~La~igL~~~~~~~A~~-----LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~ 196 (249)
T COG4674 122 AEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK 196 (249)
T ss_pred hhHHHHHHHHHHHcccchhhhhhhhh-----hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC
Confidence 34567899999999999999998875 9999999999999999999999999999999999999999999999865
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.+|+++.|| +..+..++|+|.+|++|++..+|+.+++.
T Consensus 197 -hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 197 -HSILVVEHD-MGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred -ceEEEEecc-HHHHHHhhheeEEEeccceeecccHHHhh
Confidence 689999999 57999999999999999999999988764
No 321
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.73 E-value=3.2e-17 Score=165.14 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=79.1
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l-~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||+++|++. .+ ..+|++++|++
T Consensus 157 ~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~ 233 (282)
T cd03291 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE 233 (282)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEEC
Confidence 4679999999999999999999999999999999999999999865 5554 4789999999975 45 57999999999
Q ss_pred CeEEEEeChhhHH
Q 009738 111 GETIYFGDAKMAV 123 (527)
Q Consensus 111 G~~~~~G~~~~~~ 123 (527)
|+++..|+++++.
T Consensus 234 G~i~~~g~~~~~~ 246 (282)
T cd03291 234 GSSYFYGTFSELQ 246 (282)
T ss_pred CEEEEECCHHHHH
Confidence 9999999987654
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.73 E-value=1.9e-17 Score=182.26 Aligned_cols=106 Identities=26% Similarity=0.357 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+|+.. .++++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.||
T Consensus 141 ~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tv 211 (552)
T TIGR03719 141 RKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTV 211 (552)
T ss_pred HHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeE
Confidence 45677888888853 45554 469999999999999999999999999999999999999999999876 3599
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhHH
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~~ 123 (527)
|+++|++ +.+..+||++++|++|+++ +.|+.++..
T Consensus 212 IiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 212 VAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999995 5788999999999999976 778877543
No 323
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=2.3e-17 Score=158.51 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=71.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++.++|.|||+++|++. .+.. +|++++|+
T Consensus 124 ~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~ 201 (204)
T cd03250 124 KGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLD 201 (204)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEe
Confidence 356799999999999999999999999999999999999999998 56777667899999999974 5666 99999999
Q ss_pred CCe
Q 009738 110 NGE 112 (527)
Q Consensus 110 ~G~ 112 (527)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 985
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.73 E-value=2.1e-17 Score=182.26 Aligned_cols=98 Identities=27% Similarity=0.438 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.+||++..|++++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|
T Consensus 190 ~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~t 263 (590)
T PRK13409 190 RGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKY 263 (590)
T ss_pred HHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCE
Confidence 4578899999999988888776 5999999999999999999999999999999999999999999999988 999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCC
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
+|+++|++ +++..++|++++|++|
T Consensus 264 vIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 264 VLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999996 5789999999999864
No 325
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=1.7e-17 Score=188.37 Aligned_cols=104 Identities=32% Similarity=0.440 Sum_probs=93.5
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 17 l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
.+|.+-.||.+|++. .+||||||||++||||+++||+||||||.||.||+.+...+.+.|.+.. +|+|.|++.|+++
T Consensus 1110 ~sLP~GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS- 1186 (1228)
T KOG0055|consen 1110 SSLPQGYDTRVGERG-VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS- 1186 (1228)
T ss_pred hcCcCcccCccCccc-CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh-
Confidence 367888999999754 4699999999999999999999999999999999999999999999864 5799999999975
Q ss_pred HHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 97 HLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 97 ~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
..+.+|.|+++++|++++.|+-++...
T Consensus 1187 -TIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1187 -TIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred -hhhcCCEEEEEECCEEEecccHHHHHh
Confidence 456699999999999999999988764
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.72 E-value=2.7e-17 Score=183.75 Aligned_cols=105 Identities=23% Similarity=0.439 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++++++++.+|+.. ++++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .
T Consensus 135 ~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~ 204 (635)
T PRK11147 135 LENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---G 204 (635)
T ss_pred HHHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---C
Confidence 3467889999999963 4444 4699999999999999999999999999999999999999999999873 5
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~ 121 (527)
|||+++|++ ..+.++||++++|++|+++ |.|+.++
T Consensus 205 tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 205 SIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred EEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 999999995 6788999999999999997 5677654
No 327
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.72 E-value=3.1e-17 Score=159.24 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHH
Q 009738 9 IVEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ--VLKC 79 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~-------~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~--~l~~ 79 (527)
+.+++++.++|.+..+. .. +..+..||||||||++||++++.+|+++||||||+|||+.++..+++ .++.
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~ 187 (218)
T cd03290 109 RYKAVTDACSLQPDIDLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKF 187 (218)
T ss_pred HHHHHHHHhCcHHHHHhCcCccccCc-ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 34566677777543321 11 22456899999999999999999999999999999999999999998 6777
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
++++|.|+|+++|++. .+ ..+|++++|++|.
T Consensus 188 ~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 188 LQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 7767899999999975 45 4699999999884
No 328
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=2.8e-17 Score=187.61 Aligned_cols=111 Identities=23% Similarity=0.362 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 5 EINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++.++++ .++.+||.+. .|++++ .|||||||||.||++|+.+| ++++|||||+|||+..+..+.+.|++++
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~ 538 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLR 538 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHH
Confidence 4455554 6888999865 677665 59999999999999999997 9999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
++|.|||+++|++. ++. .+|++++| ++|++++.|+++++.
T Consensus 539 ~~G~TVIvVeH~~~-~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 539 DLGNTLIVVEHDED-TIR-AADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred hCCCEEEEEeCCHH-HHH-hCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 88999999999964 554 69999999 999999999988763
No 329
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.72 E-value=4.4e-17 Score=179.54 Aligned_cols=109 Identities=21% Similarity=0.280 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCccccccc-ccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhC
Q 009738 6 INDIVEETIIKMGLQACAETK-IGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK-CIALD 83 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~-i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~~ 83 (527)
.++++++.++.+++.+..+.. -|-.....||||||||++|||+++.+|++++|||||++||+.+...+.+.+. +++.+
T Consensus 441 ~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 520 (555)
T TIGR01194 441 SLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQ 520 (555)
T ss_pred hHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC
Confidence 356678899999987654432 1212235799999999999999999999999999999999999999998664 56667
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~ 116 (527)
|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 521 ~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 521 GKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 899999999974 4678999999999998753
No 330
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.9e-17 Score=147.71 Aligned_cols=115 Identities=23% Similarity=0.381 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
++++.+.++++++++...+ + +..|+.+||||+||+.|||-|++.|++.|+||||.|||..-+..+.++++.|..+
T Consensus 126 ~iR~~a~~WL~~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l 201 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL 201 (258)
T ss_pred hHHHHHHHHHHhcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhc
Confidence 5667788899999886533 3 3467899999999999999999999999999999999999999999999999876
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|..+++++|+. ..+--++||.++|++|+++..|-++++++
T Consensus 202 ~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 202 GLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred CceEEEEechh-HHHHHhhhcceeecCCCEecccccccccc
Confidence 89999999995 46677889999999999999998887653
No 331
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=2.6e-17 Score=153.80 Aligned_cols=75 Identities=31% Similarity=0.623 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++++ ++|+|+++|++. ++.. ||++++|++|+
T Consensus 97 LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999964 699999999974 5666 99999999985
No 332
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=5.5e-17 Score=182.22 Aligned_cols=108 Identities=23% Similarity=0.319 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.++++++++.+||.+ ..++++ ..|||||||||+||++++.+|++|||||||+|||+.++..+.+.|++. + .
T Consensus 604 ~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-g 675 (718)
T PLN03073 604 EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-G 675 (718)
T ss_pred HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-C
Confidence 356788999999973 555555 469999999999999999999999999999999999999998888764 3 4
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~~ 123 (527)
|||+++|++ ..+..+||++++|++|+++ +.|+.++..
T Consensus 676 tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 676 GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999995 5788999999999999998 778776543
No 333
>PLN03073 ABC transporter F family; Provisional
Probab=99.71 E-value=5.5e-17 Score=182.20 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 6 INDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.++++.++++.+|+. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~ 391 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---P 391 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---C
Confidence 345666777788885 34555554 69999999999999999999999999999999999999999999886 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhh
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKM 121 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~ 121 (527)
.|+|+++|+. ..+..+||++++|++|++. |.|+.++
T Consensus 392 ~tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 392 KTFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 8999999994 6788999999999999996 6776653
No 334
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.71 E-value=6.9e-17 Score=177.79 Aligned_cols=106 Identities=25% Similarity=0.299 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCcccccccccCc--ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C
Q 009738 7 NDIVEETIIKMGLQACAETKIGNW--HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-D 83 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~--~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 83 (527)
++++++.++.+++.+..+. ++. .-.+||||||||++|||+++.+|++++|||||++||+.+...+.+.+.+..+ .
T Consensus 422 ~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~ 499 (547)
T PRK10522 422 PALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEM 499 (547)
T ss_pred HHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 4567888999998765432 221 1247999999999999999999999999999999999999999999987654 5
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEE
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~ 116 (527)
++|+|+++|++ +..+.+|++++|++|+++..
T Consensus 500 ~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 500 GKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 89999999997 35678999999999999866
No 335
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=9.7e-17 Score=153.63 Aligned_cols=122 Identities=24% Similarity=0.288 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++|++++++++++.-+|.+..|.++. .+|.||+-||+++.+...+|+||++||-.+-.|+.-+++..+.++++
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~Pvk-----tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQPVK-----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhCchh-----hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999999885 59999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHHHhh
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKFFAE 128 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f~~ 128 (527)
.++++|+|+++|++ +.+.++||++++|++|++...|+++++.+++.+
T Consensus 194 ~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 194 VEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred HHcCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHH
Confidence 88889999999996 689999999999999999999999999988765
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=5e-17 Score=194.97 Aligned_cols=113 Identities=24% Similarity=0.372 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCC-------cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGL-------QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L-------~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++++++..++ .+-.||.+|+ .-..||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 456666666554 3456888985 34569999999999999999999999999999999999999999999998
Q ss_pred H-hCCCEEEEEecCChhHHHhhcCeEEEEeC----CeEE-EEeChhhHH
Q 009738 81 A-LDGRIVVCSIHQPSSHLFYLFDDLLLLSN----GETI-YFGDAKMAV 123 (527)
Q Consensus 81 ~-~~~~tvi~~~H~~~~~i~~~~d~v~~l~~----G~~~-~~G~~~~~~ 123 (527)
. .+++|+|+++|+++ ..+.+|+|++|++ |+++ ..|+.++..
T Consensus 1405 ~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred hccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 7 46899999999974 4567999999999 9955 799988764
No 337
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=7.1e-17 Score=183.98 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=91.8
Q ss_pred HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009738 13 TIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89 (527)
Q Consensus 13 ~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~ 89 (527)
.+..+||... .++.+ .+|||||+||+.||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||+
T Consensus 470 ~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIv 544 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIV 544 (924)
T ss_pred hHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3677788654 45555 469999999999999999986 899999999999999999999999999989999999
Q ss_pred EecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 90 SIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 90 ~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
++|++ +.+ ..+|++++| ++|++++.|+++++.
T Consensus 545 VeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 545 VEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99996 455 489999999 899999999988763
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=5.7e-17 Score=155.38 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=80.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
.+++++++.+++.+..+++++ +||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+
T Consensus 106 ~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~ti 180 (200)
T PRK13540 106 VGITELCRLFSLEHLIDYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180 (200)
T ss_pred HHHHHHHHHcCCchhhhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 467899999999877776654 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEE
Q 009738 88 VCSIHQPSSHLFYLFDDLL 106 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~ 106 (527)
|+++|++. ..+.+|...
T Consensus 181 ii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 181 LLTSHQDL--PLNKADYEE 197 (200)
T ss_pred EEEeCCch--hccccchhh
Confidence 99999964 345566543
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.70 E-value=8.2e-17 Score=193.11 Aligned_cols=102 Identities=29% Similarity=0.472 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+. .||.+|. ....||||||||++|||||+.+|+||||||||++||+.++..+.+.|++
T Consensus 546 ~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~ 624 (1466)
T PTZ00265 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624 (1466)
T ss_pred HHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 3567788888877654 3666765 3567999999999999999999999999999999999999999999999
Q ss_pred HHh-CCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 80 IAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 80 l~~-~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
+++ +|+|+|+++|+++ .+ +.+|++++|++|
T Consensus 625 ~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 625 LKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 986 5899999999975 44 689999999986
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.70 E-value=8e-17 Score=146.30 Aligned_cols=76 Identities=33% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
.+||+||+||++||++|+.+|+++++||||+|||+.++..+.+.++++ +.|+++++|++ +++.+++|++++|++|+
T Consensus 69 ~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 349999999999999999999999999999999999999999999987 47999999996 57888999999999985
No 341
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.69 E-value=5.4e-17 Score=168.28 Aligned_cols=107 Identities=26% Similarity=0.429 Sum_probs=98.2
Q ss_pred cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 17 MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 17 l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
+.|.+-.||.+|+. -.+||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+
T Consensus 456 l~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs- 533 (580)
T COG4618 456 LRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS- 533 (580)
T ss_pred HhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH-
Confidence 34567789999964 3579999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHhhcCeEEEEeCCeEEEEeChhhHHHHH
Q 009738 97 HLFYLFDDLLLLSNGETIYFGDAKMAVKFF 126 (527)
Q Consensus 97 ~i~~~~d~v~~l~~G~~~~~G~~~~~~~~f 126 (527)
+...+|+|++|++|++-.+|+.+|++...
T Consensus 534 -~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 534 -ALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred -HHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 78889999999999999999999987654
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.69 E-value=2e-16 Score=164.21 Aligned_cols=111 Identities=23% Similarity=0.393 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.++.+++++++.+..||.-..|.++++ ||-||||||+|-++|..+|++|+|||||+-|-|....++++.+++++
T Consensus 113 ~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 113 DRRQARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred CHHHHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 4567888999999999999888888875 99999999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
++|+|||++||.. .|+.++|||+.+|.+|+++-.-+
T Consensus 188 ~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 188 AEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999995 68999999999999999886655
No 343
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=168.17 Aligned_cols=113 Identities=22% Similarity=0.401 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++.++.+++..+.+++.. ..+.++ ..||||.+|||.||+.|..+|++|||||||.|+|..++.+|.++|+++
T Consensus 373 ~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l 447 (500)
T COG1129 373 DRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447 (500)
T ss_pred ChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence 34555677889999999852 233444 469999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChh
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAK 120 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~ 120 (527)
+++|++||+++.+. +|+..+||||++|++|+++..-+.+
T Consensus 448 A~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 448 AAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999994 6899999999999999999765544
No 344
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=1e-16 Score=149.14 Aligned_cols=75 Identities=36% Similarity=0.493 Sum_probs=68.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++ +.|+|+++|++. ....+|++++|++|
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 4679999999999999999999999999999999999999999999986 589999999974 35789999999865
No 345
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.69 E-value=1.5e-16 Score=175.26 Aligned_cols=103 Identities=22% Similarity=0.304 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+++++++.+||.+ ..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .||
T Consensus 422 ~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~v 493 (552)
T TIGR03719 422 PSRAYVGRFNFKGSDQQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCA 493 (552)
T ss_pred HHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeE
Confidence 4567899999964 4566554 599999999999999999999999999999999999999999999873 489
Q ss_pred EEEecCChhHHHhhcCeEEEEeC-CeEE-EEeChh
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAK 120 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~-G~~~-~~G~~~ 120 (527)
|+++|++ +.+.++||++++|++ |++. +.|+.+
T Consensus 494 iivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 494 VVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred EEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 9999995 678899999999986 5776 556554
No 346
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=1.8e-16 Score=191.42 Aligned_cols=114 Identities=16% Similarity=0.306 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..+|.+ -.|+.+|+ .-.+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++
T Consensus 1338 deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232 1338 DADLWEALERAHIKDVIDRNPFGLDAEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred HHHHHHHHHHcCCHHHHHhCcCCCCceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 345677777777644 34667765 3346999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.. +++|+|+++|+++ .+. -+|||++|++|+++..|++++..+
T Consensus 1417 ~~-~~~TvI~IAHRl~-ti~-~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1417 EF-KSCTMLVIAHRLN-TII-DCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred Hc-CCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 64 4799999999974 444 499999999999999999998753
No 347
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=2.1e-16 Score=174.15 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+++++++.+||.+ ..+++++ +||||||||++||++++.+|++|+|||||+|||+.++..+.+.|+++. .|+
T Consensus 424 ~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~tv 495 (556)
T PRK11819 424 PSRAYVGRFNFKGGDQQKKVG-----VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---GCA 495 (556)
T ss_pred HHHHHHHhCCCChhHhcCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---CeE
Confidence 4567899999964 4566654 599999999999999999999999999999999999999999999873 389
Q ss_pred EEEecCChhHHHhhcCeEEEEeC-CeEE-EEeChh
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSN-GETI-YFGDAK 120 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~-G~~~-~~G~~~ 120 (527)
|+++|++ +++..+||++++|++ |++. +.|+.+
T Consensus 496 i~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 496 VVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred EEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999995 578999999999985 7776 466554
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.68 E-value=2.4e-16 Score=190.84 Aligned_cols=114 Identities=17% Similarity=0.299 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++. .-.|+.+|+ .-.+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++
T Consensus 1341 deei~~Al~~a~l~~~I~~lp~GLdt~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1341 DADLWESLERAHLKDVIRRNSLGLDAEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred HHHHHHHHHHcCcHHHHHhCccccCccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 34566677776664 345677765 3346999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.. +++|+|+++|+++ .+. -||||++|++|+++..|++++..+
T Consensus 1420 ~~-~~~TvI~IAHRL~-tI~-~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1420 EF-KSCTMLIIAHRLN-TII-DCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HC-CCCEEEEEeCChH-HHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 74 4799999999974 454 499999999999999999998753
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2.8e-16 Score=144.67 Aligned_cols=77 Identities=36% Similarity=0.642 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
||||||||++||++++.+|++++|||||+|||..++..+.+.+++++++++|+++++|++ +++...+|+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999999999987789999999995 57888899999999875
No 350
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=1.9e-16 Score=151.15 Aligned_cols=84 Identities=26% Similarity=0.265 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
.++++++++.+++.+..++.++ .||||||||++||++++.+|++++|||||+|||+.++..+.+.|++.+++|+|
T Consensus 101 ~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~t 175 (195)
T PRK13541 101 AETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGI 175 (195)
T ss_pred HHHHHHHHHHcCCHhhhccChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCE
Confidence 3467888999999877776654 59999999999999999999999999999999999999999999987778899
Q ss_pred EEEEecCCh
Q 009738 87 VVCSIHQPS 95 (527)
Q Consensus 87 vi~~~H~~~ 95 (527)
+|+++|++.
T Consensus 176 iii~sh~~~ 184 (195)
T PRK13541 176 VLLSSHLES 184 (195)
T ss_pred EEEEeCCcc
Confidence 999999974
No 351
>PLN03232 ABC transporter C family member; Provisional
Probab=99.67 E-value=2.7e-16 Score=189.93 Aligned_cols=113 Identities=27% Similarity=0.318 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LK 78 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~-l~ 78 (527)
+++.+++++..+|.+. -+|.+|+. -.+||||||||++||||+.++|+|++||||||+||+.+..++++. ++
T Consensus 707 ~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~ 785 (1495)
T PLN03232 707 SERYWRAIDVTALQHDLDLLPGRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMK 785 (1495)
T ss_pred HHHHHHHHHHhCCHHHHHhCCCCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhh
Confidence 4566777777776443 35778764 346999999999999999999999999999999999999988765 44
Q ss_pred HHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 79 ~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.+ .+++|+|+++|+++ ....+|+|++|++|+++..|+.++..
T Consensus 786 ~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 786 DE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 43 36799999999974 46779999999999999999988765
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.67 E-value=4e-16 Score=188.82 Aligned_cols=114 Identities=16% Similarity=0.277 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..+|.+ -.|+.+|+ .-.+||||||||++|||||+++|+||+||||||+||+.+...+.+.|++
T Consensus 1388 deei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957 1388 DEEVWWALELAHLKTFVSALPDKLDHECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred HHHHHHHHHHcCcHHHHhhCccCCCceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 345667777777653 35777765 3356999999999999999999999999999999999999999999988
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.. +++|+|+++|+++ . ...+|||++|++|+++..|++++..+
T Consensus 1467 ~~-~~~TvI~IAHRl~-t-i~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1467 QF-EDCTVLTIAHRLN-T-IMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred Hc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 64 4799999999974 3 44589999999999999999998754
No 353
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.66 E-value=7.7e-16 Score=183.09 Aligned_cols=112 Identities=27% Similarity=0.417 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEIL---TQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~---~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++..+++ +.++.+||.+. .++++. +||||||||+.||++|+ .+|++++|||||+|||+.++.++++.|++
T Consensus 784 ~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~ 857 (1809)
T PRK00635 784 PSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS 857 (1809)
T ss_pred HHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3455666 58899999875 566654 59999999999999998 69999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEe------CCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~------~G~~~~~G~~~~~~ 123 (527)
++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++.
T Consensus 858 L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 858 LTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred HHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9988999999999964 55 8999999996 79999999998764
No 354
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.65 E-value=7.6e-16 Score=175.96 Aligned_cols=108 Identities=25% Similarity=0.340 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 9 IVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 9 ~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..+.++.+||.+ ..++++ ..||||||||+.||++|+.+| ++++|||||+|||+.++..+.+.|++++++|
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G 883 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKG 883 (943)
T ss_pred HHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 3457888899975 355555 469999999999999999999 9999999999999999999999999999889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 884 ~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 884 NTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999974 45 579999999 699999999988764
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.3e-16 Score=160.25 Aligned_cols=102 Identities=30% Similarity=0.507 Sum_probs=90.6
Q ss_pred CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHH
Q 009738 19 LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHL 98 (527)
Q Consensus 19 L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i 98 (527)
|-+-.|+++|+...+ |||||||||+|||+++.+|+||++||.||.||..+..++...|++++ .|+|.+++.|..+ .+
T Consensus 385 lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls-ti 461 (497)
T COG5265 385 LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS-TI 461 (497)
T ss_pred Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh-hc
Confidence 456678999986655 99999999999999999999999999999999999999999999987 5789999999975 34
Q ss_pred HhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 99 FYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 99 ~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.. +|.+++|++|++++.|..++...
T Consensus 462 ~~-adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 462 ID-ADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred cC-CceEEEeeCCEEEecCcHHHHHH
Confidence 44 89999999999999999887654
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.65 E-value=7.9e-16 Score=186.01 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQ-PTVLLLDEPTSGLDSASAFFVIQVLK 78 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~-p~llllDEPtsgLD~~~~~~i~~~l~ 78 (527)
++++.++++..||.+. .|+.+|+ .-.+||||||||++|||||+++ |+||+||||||+||+.+...+.+.|+
T Consensus 1412 deeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1412 SAEVWAALELVGLRERVASESEGIDSRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred HHHHHHHHHHCCChHHHhhCcccccccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 4567788888887643 4777765 3356999999999999999996 89999999999999999999999999
Q ss_pred HHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 79 ~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.. +++|+|+++|+++ ....||+|++|++|+++..|++++..
T Consensus 1491 ~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1491 SAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCHHHHH
Confidence 864 4699999999974 45669999999999999999999875
No 357
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.65 E-value=6e-16 Score=173.01 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=90.8
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+++.++++.+++. +..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.
T Consensus 417 ~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~ 488 (635)
T PRK11147 417 PRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QG 488 (635)
T ss_pred HHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CC
Confidence 34678889999985 45666665 59999999999999999999999999999999999999999999876 45
Q ss_pred EEEEEecCChhHHHhhcCeEEEEe-CCeEEE-EeChhh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLS-NGETIY-FGDAKM 121 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~-~G~~~~-~G~~~~ 121 (527)
|||+++|+. ..+..+||++++++ +|++.. .|+.++
T Consensus 489 tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 489 TVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred eEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999994 67889999999998 798764 455543
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.65 E-value=7.1e-16 Score=186.74 Aligned_cols=113 Identities=25% Similarity=0.288 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLK 78 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~-~l~ 78 (527)
+++.+++++..+|.+. .+|.+|+. -..||||||||++||||+..+|+|++||||||+||+.+..++.+ .++
T Consensus 707 ~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 707 PERYERAIDVTALQHDLDLLPGGDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred HHHHHHHHHHhCcHHHHHhCCCcccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhh
Confidence 4667788888777543 36778764 34699999999999999999999999999999999999998875 555
Q ss_pred HHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 79 CIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 79 ~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.+. +|+|+|+++|++. ....+|+|++|++|+++..|+.++..
T Consensus 786 ~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 786 DEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 543 5799999999973 56779999999999999999988764
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.64 E-value=8e-16 Score=185.69 Aligned_cols=113 Identities=19% Similarity=0.285 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..+|.+ -.|+.+++ .-.+||||||||++|||||+++|+||+|||||++||+.+...+.+.|++
T Consensus 1320 deei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1320 DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456778888888754 35677765 2346999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.. +++|||+++|++. . ...+|+|++|++|+++..|++++..
T Consensus 1399 ~~-~~~TvI~IaHRl~-t-i~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1399 SF-SNCTVILSEHRVE-A-LLECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred Hc-CCCEEEEEecCHH-H-HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 64 4699999999974 3 4459999999999999999998775
No 360
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=1e-15 Score=182.12 Aligned_cols=102 Identities=25% Similarity=0.444 Sum_probs=91.5
Q ss_pred HHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Q 009738 14 IIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCS 90 (527)
Q Consensus 14 l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~ 90 (527)
|..+||++. .|+.++ .|||||+||+.||++|+.+| ++++|||||+|||+.++..+.+.|++++++|.|||++
T Consensus 460 L~~vGL~~L~ldR~~~-----tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvV 534 (1809)
T PRK00635 460 LIDLGLPYLTPERALA-----TLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLV 534 (1809)
T ss_pred HHhccccCCCCCCchh-----hCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456788865 466665 59999999999999999999 8999999999999999999999999999889999999
Q ss_pred ecCChhHHHhhcCeEEEEe------CCeEEEEeChhhH
Q 009738 91 IHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMA 122 (527)
Q Consensus 91 ~H~~~~~i~~~~d~v~~l~------~G~~~~~G~~~~~ 122 (527)
+|++. +.+.+|++++|. +|++++.|++++.
T Consensus 535 eHd~~--vi~~aDrVi~L~pGag~~gG~Iv~~G~~~ei 570 (1809)
T PRK00635 535 EHDEQ--MISLADRIIDIGPGAGIFGGEVLFNGSPREF 570 (1809)
T ss_pred eCcHH--HHHhCCEEEEEcCCcccCCCEEEEecCHHHH
Confidence 99964 678999999996 7899999998765
No 361
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.64 E-value=5.7e-16 Score=169.90 Aligned_cols=98 Identities=31% Similarity=0.516 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.+.++..++.+. .||.+|+ ....||||||||++|||+++++|++++||||||+||+.+...+.+.|++
T Consensus 425 ~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~ 503 (529)
T TIGR02857 425 DAEIRRALERAGLDEFVAALPQGLDTLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA 503 (529)
T ss_pred HHHHHHHHHHcCcHHHHHhCcccccchhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 3567778888777543 4677765 3457999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEE
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
+. +++|+|+++|+++ ..+.+|++++|
T Consensus 504 ~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 504 LA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred hc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 75 5799999999974 35679999875
No 362
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.64 E-value=1.3e-15 Score=147.41 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 14 IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 14 l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++..++.+..+.++ ..||||||||+++|++++. +|++++|||||+|||+.++..+.+.|++++++
T Consensus 108 l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~ 182 (213)
T cd03279 108 LPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE 182 (213)
T ss_pred hhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC
Confidence 34444555555544 4699999999999999985 57899999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+.|+|+++|++ +.+...+|+++++++|.
T Consensus 183 ~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 183 NRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 99999999996 57888999999999875
No 363
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.63 E-value=2.3e-15 Score=137.38 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.+++++++-+.|+.+||-+.. .+.+++.||.||||||++||||+.+|+|++.||..++||...+.++.++.-+|.
T Consensus 121 ~~~~R~~~i~~TL~~VGL~Pdh----an~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQ 196 (267)
T COG4167 121 EPEQRRKQIFETLRMVGLLPDH----ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQ 196 (267)
T ss_pred ChHHHHHHHHHHHHHhccCccc----cccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHH
Confidence 4677889999999999986532 234567899999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.+-|.++.|. ..+.++.|+|++|++|+++..|++.++.
T Consensus 197 ek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 197 EKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhh
Confidence 75 88999998885 6899999999999999999999998764
No 364
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=2e-15 Score=172.29 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILT---QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 9 ~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~---~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++.+||... .++++ +.|||||+||+.||++|+. +|++++|||||+|||+.++..+.+.|+++.++|
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G 881 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQG 881 (924)
T ss_pred HHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 45578888999753 45544 4699999999999999997 599999999999999999999999999999889
Q ss_pred CEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~ 122 (527)
.|||+++|++. .+ +.+|+++.| ++|++++.|+++++
T Consensus 882 ~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 882 NTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999974 45 579999999 79999999998754
No 365
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=164.92 Aligned_cols=105 Identities=28% Similarity=0.465 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
.+.+++.++..+|+.+. +++++ +||||||+||++|++|+.+|++|||||||++||..+...+-+.|++ ..|
T Consensus 131 ~e~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~--~~g- 201 (530)
T COG0488 131 LEARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPG- 201 (530)
T ss_pred hHHHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCC-
Confidence 35678899999999877 77776 4999999999999999999999999999999999999999888874 345
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChh
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK 120 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~ 120 (527)
|+|+++|| +..+-+.|++|+-++.|++. |.|..+
T Consensus 202 tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 202 TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999 89999999999999999765 455544
No 366
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.63 E-value=7.8e-16 Score=158.26 Aligned_cols=105 Identities=30% Similarity=0.464 Sum_probs=92.8
Q ss_pred HcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 16 KMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 16 ~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
.++.-+-.+|++|++..| |||||||||+|||+++.+|.+++|||.||.||..+..+|...|.+++.. +|.|++.|..+
T Consensus 657 Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLS 734 (790)
T KOG0056|consen 657 ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLS 734 (790)
T ss_pred HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeeh
Confidence 467778889999986655 9999999999999999999999999999999999999999999999864 78888889975
Q ss_pred hHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 96 SHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 96 ~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.+. .+|.++++++|+|++.|..++...
T Consensus 735 -Tiv-nAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 735 -TIV-NADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred -hee-cccEEEEEeCCeEeecCcHHHHHh
Confidence 344 489999999999999999887653
No 367
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.62 E-value=1.7e-15 Score=169.74 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCccccccccc----CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQACAETKIG----NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~----~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++++++++.++|++..+++.| ......||||||||++|||+++.+|++++|||||+|||+.+...+.+.+++
T Consensus 551 ~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--- 627 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--- 627 (659)
T ss_pred HHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---
Confidence 4567889999999877665432 113457999999999999999999999999999999999999999998876
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.|+|+|+++|+++ ..+.+|++++|+
T Consensus 628 ~~~tvI~isH~~~--~~~~~d~il~l~ 652 (659)
T TIGR00954 628 FGITLFSVSHRKS--LWKYHEYLLYMD 652 (659)
T ss_pred cCCEEEEEeCchH--HHHhCCEEEEEe
Confidence 3899999999975 357899999997
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.60 E-value=3.6e-15 Score=142.62 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++++++++. .+..++++ +.||||||||++||++++ .+|++++|||||+|||+.++..+.+.|+++++
T Consensus 94 ~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~ 165 (197)
T cd03278 94 QGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK 165 (197)
T ss_pred hhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc
Confidence 3466777777 33444444 569999999999999997 46699999999999999999999999999876
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
+.+||+++|++. . .+.+|+++.+..
T Consensus 166 -~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 166 -ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred -CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 689999999974 4 468999999964
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=4.2e-15 Score=134.01 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~~~t 86 (527)
+.....+++++|.+..-+ +...+||||||||.+++|.|..-|+||+||||||.||+.+++.|-++|.++. .++..
T Consensus 111 ~aa~~llar~~l~~~~L~----k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vA 186 (223)
T COG4619 111 AAALDLLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186 (223)
T ss_pred HHHHHHHHHcCCchhhhc----chhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceE
Confidence 456778999998754332 3345799999999999999999999999999999999999999999999987 56889
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
++.++|++ ++..+.+||++-+..|++
T Consensus 187 v~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 187 VLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred EEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999997 467788999999999875
No 370
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.59 E-value=5.4e-15 Score=178.55 Aligned_cols=96 Identities=22% Similarity=0.340 Sum_probs=83.3
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 24 ~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~-l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
+|.+|+. ...||||||||++||||++.+|+++||||||+|||+.++.++.+. ++++. +|+|+|+++|++. .+ ..+
T Consensus 539 ~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~a 614 (1490)
T TIGR01271 539 KTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKA 614 (1490)
T ss_pred cccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhC
Confidence 4556653 567999999999999999999999999999999999999999985 66654 4899999999974 44 459
Q ss_pred CeEEEEeCCeEEEEeChhhHH
Q 009738 103 DDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 103 d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|++++|++|+++..|+.++..
T Consensus 615 d~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 615 DKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999988764
No 371
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.59 E-value=5.7e-15 Score=146.57 Aligned_cols=101 Identities=15% Similarity=0.188 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCcccccc---------------cccCcccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCC
Q 009738 6 INDIVEETIIKMGLQACAET---------------KIGNWHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLD 66 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~---------------~i~~~~~~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD 66 (527)
..+++.+.++.+||...... ...+..+++||||||||++||++++ .+|+++++||||+|||
T Consensus 123 ~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld 202 (251)
T cd03273 123 QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALD 202 (251)
T ss_pred eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCC
Confidence 45788899999998621000 1112345679999999999999998 4789999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 67 SASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 67 ~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
+.++..+.+.|++++ +|.++|+++|++ ++.+.+|+++-+.
T Consensus 203 ~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 203 LSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 999999999999985 478999999993 6788899999875
No 372
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.59 E-value=3.4e-15 Score=163.81 Aligned_cols=86 Identities=28% Similarity=0.446 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++.+ -.||.+|+. -..||||||||++||||++.+|++++||||||+||+.+...+.+.|++
T Consensus 437 ~e~i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~ 515 (529)
T TIGR02868 437 DEELWAALERVGLADWLRSLPDGLDTVLGEG-GARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA 515 (529)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccchhccc-cCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 456778888877754 347888863 356999999999999999999999999999999999999999999997
Q ss_pred HHhCCCEEEEEecCC
Q 009738 80 IALDGRIVVCSIHQP 94 (527)
Q Consensus 80 l~~~~~tvi~~~H~~ 94 (527)
+. +++|+|+++|++
T Consensus 516 ~~-~~~TvIiItHrl 529 (529)
T TIGR02868 516 AL-SGKTVVVITHHL 529 (529)
T ss_pred hc-CCCEEEEEecCC
Confidence 63 469999999984
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.59 E-value=8.3e-15 Score=177.22 Aligned_cols=96 Identities=28% Similarity=0.344 Sum_probs=80.9
Q ss_pred ccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 25 TKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 25 ~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
+.+|+ ....||||||||++||||++.+|++++|||||++||+.++..+++.+.....+|+|+|+++|++. . ...+|+
T Consensus 774 t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-~~~ad~ 850 (1560)
T PTZ00243 774 TEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH-V-VPRADY 850 (1560)
T ss_pred HHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-H-HHhCCE
Confidence 34443 35679999999999999999999999999999999999999988754332335899999999974 3 467999
Q ss_pred EEEEeCCeEEEEeChhhHH
Q 009738 105 LLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 105 v~~l~~G~~~~~G~~~~~~ 123 (527)
+++|++|++++.|+.++..
T Consensus 851 ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 851 VVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred EEEEECCEEEEecCHHHHH
Confidence 9999999999999988754
No 374
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=7.3e-15 Score=177.89 Aligned_cols=97 Identities=22% Similarity=0.353 Sum_probs=84.3
Q ss_pred cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCChhHHHhh
Q 009738 24 ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA--LDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 24 ~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~--~~~~tvi~~~H~~~~~i~~~ 101 (527)
+|.+|+ ...+||||||||++||||+..+|++++|||||++||+.++..+.+.+.+.. .+++|+|+++|++. .+ ..
T Consensus 751 ~t~ig~-~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~ 827 (1522)
T TIGR00957 751 RTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQ 827 (1522)
T ss_pred CceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hh
Confidence 455665 356799999999999999999999999999999999999999999997642 35799999999974 34 45
Q ss_pred cCeEEEEeCCeEEEEeChhhHH
Q 009738 102 FDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 102 ~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|++++|++|+++..|+.++..
T Consensus 828 ~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 828 VDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred CCEEEEecCCeEEeeCCHHHHH
Confidence 9999999999999999988764
No 375
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=8.4e-15 Score=145.07 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCCcccccc---------cccC--------cccCCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCC
Q 009738 7 NDIVEETIIKMGLQACAET---------KIGN--------WHLRGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGL 65 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~---------~i~~--------~~~~~lSgGer~Rl~ia~~l~~~----p~llllDEPtsgL 65 (527)
.+.++++++.+|+...... .+.+ ..+..||||||||++||++++.+ |+++++||||+||
T Consensus 111 ~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~L 190 (247)
T cd03275 111 LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAAL 190 (247)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccC
Confidence 3456788899998643211 1111 12368999999999999999975 8999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 66 DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 66 D~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
|+.++..+.+.|++++++|.++|+++|++ ++.+.+|++++|..
T Consensus 191 D~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 191 DNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 99999999999999988799999999994 46788999999963
No 376
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.58 E-value=5.9e-15 Score=138.22 Aligned_cols=101 Identities=27% Similarity=0.432 Sum_probs=90.3
Q ss_pred HHHHHH--cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEE
Q 009738 11 EETIIK--MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIV 87 (527)
Q Consensus 11 ~~~l~~--l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tv 87 (527)
.+-++. +||++..++++|- |||||||-+++++|.++.|+||+|||=|+.|||.++..+++.=.++.++ +.|.
T Consensus 128 ~~~l~~l~lgLenrL~~~igl-----LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTt 202 (263)
T COG1101 128 RERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTT 202 (263)
T ss_pred HHHHhhcccchhhhhcChhhh-----ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCce
Confidence 334444 5788999999985 9999999999999999999999999999999999999999999998765 6799
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
++++|+. .+..++-+|+++|++|+|+.+-
T Consensus 203 lMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 203 LMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 9999995 6789999999999999999863
No 377
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.58 E-value=6.4e-15 Score=140.97 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++++++++. .+..++++ +.||+|||||++||+++ +.+|++++|||||+|||+.++..+.+.|+++.+
T Consensus 90 ~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~ 161 (198)
T cd03276 90 QDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAK 161 (198)
T ss_pred HHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHh
Confidence 4567777776 45555554 46999999999999999 589999999999999999999999999999865
Q ss_pred C---CCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 83 D---GRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 83 ~---~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+ +.+|++++|++ +++..+ |+|.+|..|+
T Consensus 162 ~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 162 KQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 4 35899999996 456664 9999998764
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.56 E-value=1.4e-14 Score=142.84 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=68.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeE
Q 009738 30 WHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL 105 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v 105 (527)
..++.||||||||++||++++. +|+++++||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.+++|++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i 230 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKF 230 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEE
Confidence 4567899999999999999974 5899999999999999999999999999866 77888887774 578999999
Q ss_pred EEEe
Q 009738 106 LLLS 109 (527)
Q Consensus 106 ~~l~ 109 (527)
++|.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 9996
No 379
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.6e-14 Score=130.52 Aligned_cols=104 Identities=22% Similarity=0.313 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+.+..++++..++..+++.+..=. -.|..+||||+|||.|||.++.+-.||+|||||+.||..++..++++|.+-+
T Consensus 124 ~~~~a~~~a~~Ll~rLnlperLW~----LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K 199 (235)
T COG4778 124 PREVARAKAADLLTRLNLPERLWS----LAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK 199 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHhc----CCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH
Confidence 456677889999999998653322 2356799999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
..|..+|-+-|| .+.-...+||++-+..
T Consensus 200 a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 200 ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 899999999999 5667788999988764
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=1.2e-14 Score=140.52 Aligned_cols=92 Identities=18% Similarity=0.182 Sum_probs=78.4
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 11 EETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 11 ~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++.++|.+..+++++ .+|+|||||++||++++. +|+++++||||+|||+.++..+.+.++++++ +.+
T Consensus 109 ~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~ 182 (212)
T cd03274 109 GEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQ 182 (212)
T ss_pred CcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCE
Confidence 556677778776666654 599999999999999974 4799999999999999999999999999864 567
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
+|+++|++ ++.++||++++|+.
T Consensus 183 ~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 183 FIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEEECcH--HHHHhCCEEEEEEe
Confidence 88888984 68899999999974
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.51 E-value=4.4e-14 Score=135.85 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=70.3
Q ss_pred ccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CCEEEEEecCChhHHHhhc
Q 009738 31 HLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAF-FVIQVLKCIALD-GRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 31 ~~~~lSgGer~R------l~ia~~l~~~p~llllDEPtsgLD~~~~~-~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~ 102 (527)
.++.||+||||| +++|++++.+|+++++||||+|||+.++. .+.+.|++++++ |.++|+++|++. ....+
T Consensus 112 ~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~ 189 (204)
T cd03240 112 MRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAA 189 (204)
T ss_pred CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhC
Confidence 456799999996 78999999999999999999999999999 999999999876 889999999963 45679
Q ss_pred CeEEEEe-CC
Q 009738 103 DDLLLLS-NG 111 (527)
Q Consensus 103 d~v~~l~-~G 111 (527)
|+++.|. +|
T Consensus 190 d~i~~l~~~~ 199 (204)
T cd03240 190 DHIYRVEKDG 199 (204)
T ss_pred CEEEEEeeCC
Confidence 9999996 44
No 382
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=9.6e-12 Score=145.07 Aligned_cols=114 Identities=22% Similarity=0.350 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++-+++++...|++. -.|.+|++. -+||||||||+++|||.-++++|++||.|.|.+|+.....+.+..-.
T Consensus 610 ~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG-inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~ 688 (1381)
T KOG0054|consen 610 EERYDKVIKACALKKDLEILPFGDLTEIGERG-INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR 688 (1381)
T ss_pred HHHHHHHHHHccCHhHHhhcCCCCcceecCCc-cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH
Confidence 4566677777666543 345666543 35999999999999999999999999999999999999999986665
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
..-+++|+|++|||. +..+.+|.|++|++|++...|+.+|..
T Consensus 689 ~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 689 GLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHH
Confidence 555689999999984 567789999999999999999999876
No 383
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.49 E-value=1e-13 Score=144.18 Aligned_cols=115 Identities=21% Similarity=0.332 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
..+.++.+.+++++++.....- ....+.||||++||+-+||+|..+|++|+..+||.|||..+.+.+.+.|.+.++
T Consensus 376 ~~~i~~~a~~li~~fdVr~~~~----~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~ 451 (501)
T COG3845 376 RRAIRKFARELIEEFDVRAPSP----DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD 451 (501)
T ss_pred HHHHHHHHHHHHHHcCccCCCC----CcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh
Confidence 4677888999999999862211 123457999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|+.|++++.+. +|++.++||+.+|++|+++...+++++
T Consensus 452 ~G~AVLLiS~dL-DEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 452 AGKAVLLISEDL-DEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred cCCEEEEEehhH-HHHHHhhheeeeeeCCceecccccccC
Confidence 999999999994 799999999999999999988887753
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.48 E-value=1e-13 Score=144.98 Aligned_cols=110 Identities=25% Similarity=0.424 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCC-cccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGL-QACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L-~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.+..+.++-+++..+|- .+..++++ +++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.
T Consensus 194 ~~~~~~k~~~il~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~- 267 (614)
T KOG0927|consen 194 NDTFEAKAAKILHGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY- 267 (614)
T ss_pred chhHHHHHHHHHHhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-
Confidence 34455667777777774 45555544 579999999999999999999999999999999999998888877654
Q ss_pred hCCC-EEEEEecCChhHHHhhcCeEEEEeCCe-EEEEeChhh
Q 009738 82 LDGR-IVVCSIHQPSSHLFYLFDDLLLLSNGE-TIYFGDAKM 121 (527)
Q Consensus 82 ~~~~-tvi~~~H~~~~~i~~~~d~v~~l~~G~-~~~~G~~~~ 121 (527)
.+ ++|+++|. .+.+-..|.+|+-|.+++ +.|.|+.++
T Consensus 268 --d~~~lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 268 --DRIILVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred --cCceEEEEecc-hhhhhhHhhhhheecccceeeecCCHHH
Confidence 34 78888887 688999999999999999 556677664
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.46 E-value=5.4e-14 Score=131.00 Aligned_cols=116 Identities=17% Similarity=0.272 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G 84 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~ 84 (527)
+++++-++|.++|+.+..|- -..++.+|.-||-|+|.||.|++..|++|+.||||+.+|+.++.++.++|.++.+. |
T Consensus 132 rKrrAIeLLHrVGIKdHkDI--M~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~ 209 (330)
T COG4170 132 RKRRAIELLHRVGIKDHKDI--MRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSN 209 (330)
T ss_pred hHHHHHHHHHHhccccHHHH--HHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCC
Confidence 34677899999999987764 34678899999999999999999999999999999999999999999999999874 8
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.||++++||. ..+.+.||++-+|+-|+-+..++.+++++
T Consensus 210 TtILL~s~Dl-~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 210 TTILLISHDL-QMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred ceEEEEcccH-HHHHHHhhheEEEEecccccccchhHHhc
Confidence 8999999995 57999999999999999999998887753
No 386
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.44 E-value=4.9e-13 Score=125.74 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEE
Q 009738 33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
+-||||||||+++|++++ .+|+++++|||++|||+..+..+.+.|++++++|.++|+++|++. ....+|+++.+
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i 170 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGV 170 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEE
Confidence 349999999999999997 699999999999999999999999999999887899999999963 45689999999
Q ss_pred eC
Q 009738 109 SN 110 (527)
Q Consensus 109 ~~ 110 (527)
.+
T Consensus 171 ~~ 172 (178)
T cd03239 171 LF 172 (178)
T ss_pred EE
Confidence 75
No 387
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.43 E-value=4.3e-13 Score=129.76 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=69.3
Q ss_pred cccCCCCHHHHHHHHHHHHH----HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-CEEEEEecCChhHHHhhcC
Q 009738 30 WHLRGISSGEKKRLSISIEI----LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-G-RIVVCSIHQPSSHLFYLFD 103 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~-~tvi~~~H~~~~~i~~~~d 103 (527)
..+.+||||||||+.++.++ +.+|+++++||||+|||+.++..+.+.|++++++ | .++|+++|+.. ++...+|
T Consensus 122 ~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~ 200 (213)
T cd03277 122 LDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHE 200 (213)
T ss_pred cchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccC
Confidence 35668999999998877654 4799999999999999999999999999999876 5 47999999964 4556666
Q ss_pred --eEEEEeCCe
Q 009738 104 --DLLLLSNGE 112 (527)
Q Consensus 104 --~v~~l~~G~ 112 (527)
++++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 788888886
No 388
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.41 E-value=7.4e-14 Score=126.74 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh-----CC--CEEEEeCCCCCCCHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT-----QP--TVLLLDEPTSGLDSASAFFVI 74 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~-----~p--~llllDEPtsgLD~~~~~~i~ 74 (527)
+.++....++++.+.++|++...+.+ ..|||||=|||-+|...++ || ++|++|||.++||...+..+-
T Consensus 98 P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLd 172 (248)
T COG4138 98 PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALD 172 (248)
T ss_pred chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHH
Confidence 44667778899999999987666655 4699999999999987765 45 699999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 75 QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 75 ~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.|.+++..|.+||++.||.. ...+.+|++.+|+.|+++..|.++++.
T Consensus 173 rll~~~c~~G~~vims~HDLN-hTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 173 RLLSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred HHHHHHHhCCcEEEEeccchh-hHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999975 577889999999999999999999875
No 389
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.41 E-value=8.8e-13 Score=142.69 Aligned_cols=106 Identities=26% Similarity=0.308 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+..+...|..+++.. ...+++ +.||||||.||.+|+.++.+|.+|+|||||+.||..+...+-+.|++. ..
T Consensus 416 e~~~r~~L~~f~F~~~~~~~~v-----~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G 487 (530)
T COG0488 416 EQEVRAYLGRFGFTGEDQEKPV-----GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG 487 (530)
T ss_pred HHHHHHHHHHcCCChHHHhCch-----hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC
Confidence 567888999999863 333444 469999999999999999999999999999999999999999988764 46
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEE-eChhhH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYF-GDAKMA 122 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~-G~~~~~ 122 (527)
|||+++|| +..+..++++++.+.+ ++..+ |+.++.
T Consensus 488 tvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 488 TVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred eEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999 6799999999999998 54443 665543
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.39 E-value=1e-12 Score=135.02 Aligned_cols=96 Identities=28% Similarity=0.459 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVV 88 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi 88 (527)
+.+++++.++|++..|+.+. +|||||.||++||.+++++++++++|||||=||...+....+.+++|++.+++|+
T Consensus 193 ~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~Vi 267 (591)
T COG1245 193 KFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVI 267 (591)
T ss_pred cHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEE
Confidence 56789999999999999886 4999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCChhHHHhhcCeEEEEeC
Q 009738 89 CSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 89 ~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
++.||. ..+-.++|-|.++.+
T Consensus 268 VVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 268 VVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred EEechH-HHHHHhhheeEEEec
Confidence 999995 467778899888875
No 391
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-12 Score=120.56 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+.+.+.++.+||....|.+++. ||-||||||+|||-.++.+++=|||||+++||......+-..+..-+++|..|
T Consensus 109 ~~i~~Al~~vgL~g~~dlp~~~-----LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiV 183 (209)
T COG4133 109 ATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183 (209)
T ss_pred hhHHHHHHHcCcccccccchhh-----cchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEE
Confidence 5678899999999999999875 99999999999999999999999999999999999999999999988899999
Q ss_pred EEEecCChh
Q 009738 88 VCSIHQPSS 96 (527)
Q Consensus 88 i~~~H~~~~ 96 (527)
|.++|||..
T Consensus 184 llttHq~l~ 192 (209)
T COG4133 184 LLTTHQPLP 192 (209)
T ss_pred EEecCCccC
Confidence 999999864
No 392
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.34 E-value=7.2e-13 Score=127.03 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..+|+||||++.++++ +.+|+++++|||++|+|+..+..+. ..++++++.|.++|+++|+ .++.+++|+++.+.+|
T Consensus 90 s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g 166 (200)
T cd03280 90 STFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENA 166 (200)
T ss_pred chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEE
Confidence 4689999999999977 4899999999999999999999996 4788888788999999998 3678999999999999
Q ss_pred eEEEEe
Q 009738 112 ETIYFG 117 (527)
Q Consensus 112 ~~~~~G 117 (527)
++.+.+
T Consensus 167 ~l~~~~ 172 (200)
T cd03280 167 SMEFDP 172 (200)
T ss_pred EEEEec
Confidence 998874
No 393
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.34 E-value=5e-12 Score=147.40 Aligned_cols=98 Identities=17% Similarity=0.355 Sum_probs=84.9
Q ss_pred ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 23 AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 23 ~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
.|+++.+ .-.++|-||||.+++||||+++++||+|||.|+++|+.+-..|.++|++ +-.+.|||.+.|+.. .+.+ +
T Consensus 1265 Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~-~F~dcTVltIAHRl~-TVmd-~ 1340 (1381)
T KOG0054|consen 1265 LDSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE-EFKDCTVLTIAHRLN-TVMD-S 1340 (1381)
T ss_pred CCceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH-HhcCCeEEEEeeccc-hhhh-c
Confidence 4444443 2357999999999999999999999999999999999999999999997 335799999999975 4665 8
Q ss_pred CeEEEEeCCeEEEEeChhhHHH
Q 009738 103 DDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 103 d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|||+||++|+++++|+|++..+
T Consensus 1341 DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1341 DRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred CeEEEeeCCeEeecCChHHHHh
Confidence 9999999999999999998764
No 394
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3e-12 Score=128.96 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.||||||||+++|++++. +|+++++||||+|||+..+..+.+.++++.+ +.++|+++|+|. +...+|++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999987664 9999999999999999999999999999865 689999999974 568999999998
Q ss_pred CCe
Q 009738 110 NGE 112 (527)
Q Consensus 110 ~G~ 112 (527)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 395
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.33 E-value=6.4e-12 Score=137.04 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=96.0
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+.-+.|.++||.-. +.|. ....|||||-||+-+|.+|.... .+++|||||+||......++++.|.+|.+.|.
T Consensus 801 rkLqtL~dVGLgYi---~LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~Gn 876 (935)
T COG0178 801 RKLQTLVDVGLGYI---KLGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGN 876 (935)
T ss_pred HHHHHHHHcCcceE---ecCC-ccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 34467788898754 3554 34579999999999999999988 89999999999999999999999999999999
Q ss_pred EEEEEecCChhHHHhhcCeEEEEe------CCeEEEEeChhhHHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLS------NGETIYFGDAKMAVK 124 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~------~G~~~~~G~~~~~~~ 124 (527)
|||++.|.. ++.+.+|.|+=|- .|+++..|+|+++.+
T Consensus 877 TViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 877 TVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999999995 5888899999983 589999999998865
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.31 E-value=8.4e-12 Score=115.59 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 34 GISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
++|+||+||++++++|.. +|+++++|||++|+|+..+..+.+.++++.+++.++|+++|++ ++...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 699999999999999997 7899999999999999999999999999876688999999996 3566799999986
Q ss_pred C
Q 009738 110 N 110 (527)
Q Consensus 110 ~ 110 (527)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.30 E-value=4.5e-12 Score=130.28 Aligned_cols=94 Identities=22% Similarity=0.377 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 009738 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV 88 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi 88 (527)
..++++-|.|++..++.+. +|||||.|||+||.+|..++++++||||++-||...+..+.+.|++...+ ++|.+
T Consensus 436 ~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~ 510 (591)
T COG1245 436 KTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTAL 510 (591)
T ss_pred HHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEE
Confidence 3467788889888888775 59999999999999999999999999999999999999999999999875 78999
Q ss_pred EEecCChhHHHhhcCeEEEEe
Q 009738 89 CSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 89 ~~~H~~~~~i~~~~d~v~~l~ 109 (527)
++.||. .-+-.++||+++..
T Consensus 511 vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 511 VVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred EEecce-ehhhhhhceEEEEe
Confidence 999995 46778889998865
No 398
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.30 E-value=5.3e-10 Score=109.75 Aligned_cols=225 Identities=14% Similarity=0.096 Sum_probs=149.6
Q ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccC-CCC--hhhhhhh----hHHHHHHHHHHHHHHhhhHHHHHHHHH-H
Q 009738 233 RSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLS--NPAIYGR----PKCVAFIYGFLICLSVGGLPSFIEEHK-A 304 (527)
Q Consensus 233 R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l-~~~--~~~i~~r----~~~l~f~~~~~~~~~~~~~~~f~~er~-v 304 (527)
|+++...|||..+...+++-+++.++.|.++-+. +.. ..+.... .|.+.+.....+. ..+.. ...||. -
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~-~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGIS-VIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhH-HHHHHHhC
Confidence 6778899999988888888888888888877543 111 1122111 1111111111111 11111 222332 2
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Q 009738 305 SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVL 384 (527)
Q Consensus 305 ~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~ 384 (527)
+.++....=-+...|+++|.+.+++..++..+++..+.+++.+.+. ..++..++..++...+..+++.+++...++..
T Consensus 78 ~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 78 FLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2333333334678999999999999999999998888888877554 33444444444555566889999999999988
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHHHHHHhhCC
Q 009738 385 MGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEEILLKLYGV 464 (527)
Q Consensus 385 ~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~ 464 (527)
.+..+.+.+..+++.+||.+.|.+.+|.+ ++| +.+++|.+|+.|++-..-. |. .
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~-~~~-i~~~~P~~~~~~~~r~~~~-~~-----------------------~ 209 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAW-MQG-LAKINPLTYAVDGARYYLA-GV-----------------------S 209 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHH-HHH-HHHHCcHHHHHHHHHHHHh-CC-----------------------C
Confidence 88888888888899999999999999984 788 9999999999998653211 10 0
Q ss_pred cCcchhhhHHHHHHHHHHHHHHHHH
Q 009738 465 QLNYCKWWDLAALFCILTCYKIVLF 489 (527)
Q Consensus 465 ~~~~~~w~~~~iL~~~~v~f~~~~~ 489 (527)
.. .+.|.++++|+++.+++.+++.
T Consensus 210 ~~-~~~~~~~~~l~~~~~~~~~l~~ 233 (236)
T TIGR01247 210 PT-FPLEQDLLVLTLLAVIFVGIAA 233 (236)
T ss_pred cc-cchHHHHHHHHHHHHHHHHHHH
Confidence 01 1256778888888877765543
No 399
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.29 E-value=7e-12 Score=111.34 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI-ALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l-~~~ 83 (527)
.+++.++..+++.||....++. |.+||||||-||++-|+|+..|+.++||||+|.||..-+.+..++.-.- +..
T Consensus 110 aRr~~a~aAL~~~gL~g~f~~d-----P~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~a 184 (213)
T COG4136 110 ARRNAANAALERSGLDGAFHQD-----PATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAA 184 (213)
T ss_pred HHHhhHHHHHHHhccchhhhcC-----hhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhc
Confidence 4556788899999998877764 3569999999999999999999999999999999999999999877654 456
Q ss_pred CCEEEEEecCC
Q 009738 84 GRIVVCSIHQP 94 (527)
Q Consensus 84 ~~tvi~~~H~~ 94 (527)
|..+|.++||.
T Consensus 185 giPtv~VTHD~ 195 (213)
T COG4136 185 GIPTVQVTHDL 195 (213)
T ss_pred CCCeEEEeccc
Confidence 99999999994
No 400
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.29 E-value=7.5e-12 Score=138.05 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEE
Q 009738 33 RGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +.+||+++|+|. +...+|+++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999986 699999999999999999999999999975 799999999974 44689999999
Q ss_pred eCCe
Q 009738 109 SNGE 112 (527)
Q Consensus 109 ~~G~ 112 (527)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8874
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.9e-12 Score=134.87 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++..+++|..+|.++.. ....++.||||.|-|+++||||..+|+||||||||+.||..+..-+-+.|+.+. .|
T Consensus 175 ~ei~~~~L~glGFt~em----q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T 247 (582)
T KOG0062|consen 175 EEIYDKILAGLGFTPEM----QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---IT 247 (582)
T ss_pred HHHHHHHHHhCCCCHHH----HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ce
Confidence 34455588888886432 223456799999999999999999999999999999999999988888887653 79
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChh
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAK 120 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~ 120 (527)
+|+++|| +..+-+.|..|+.+++-++- |.|+-+
T Consensus 248 ~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~ 281 (582)
T KOG0062|consen 248 SLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYS 281 (582)
T ss_pred EEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHH
Confidence 9999999 78899999999888775543 345443
No 402
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.2e-11 Score=128.98 Aligned_cols=100 Identities=25% Similarity=0.365 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
++.+++-+..+||+. .+.. ...+||||||-||++|.....+|.+|+|||||+.||-.+...+.+.|+.. +.
T Consensus 459 ~ee~r~hl~~~Gl~g~la~~-----si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G 530 (582)
T KOG0062|consen 459 EEEIRRHLGSFGLSGELALQ-----SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG 530 (582)
T ss_pred HHHHHHHHHhcCCCchhhhc-----cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC
Confidence 456677889999963 3333 34579999999999999999999999999999999999988888888764 45
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEE
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~ 115 (527)
.||+++|+ .+.+..+|+.+.+.++|++.-
T Consensus 531 GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 531 GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 79999999 578999999999999999874
No 403
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=1.8e-11 Score=144.37 Aligned_cols=81 Identities=21% Similarity=0.197 Sum_probs=74.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHH
Q 009738 30 WHLRGISSGEKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~ 99 (527)
..++.|||||++|+++|++|+. +|++||+||||+|||+.+...+++.|+++...|++|++++|++ ....
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence 3567899999999999999986 7999999999999999999999999999988899999999996 5788
Q ss_pred hhcCeEEEEeCC
Q 009738 100 YLFDDLLLLSNG 111 (527)
Q Consensus 100 ~~~d~v~~l~~G 111 (527)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
No 404
>PRK10869 recombination and repair protein; Provisional
Probab=99.24 E-value=2.4e-11 Score=133.25 Aligned_cols=105 Identities=20% Similarity=0.356 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCcccc-------cc----cccC-------------c---ccCCCCHHHHHHHHHHHHHHh----CC
Q 009738 5 EINDIVEETIIKMGLQACA-------ET----KIGN-------------W---HLRGISSGEKKRLSISIEILT----QP 53 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~-------~~----~i~~-------------~---~~~~lSgGer~Rl~ia~~l~~----~p 53 (527)
+..+.+.+.|..|+|.+.. +. .-|. + ..+.+||||+||++||++++. +|
T Consensus 374 ~l~~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~~~~~~ 453 (553)
T PRK10869 374 ELAQLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMET 453 (553)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEecCCCCCcchhhhhCCHHHHHHHHHHHHHHhccCCCC
Confidence 4456677888999986552 11 1111 0 124689999999999999997 58
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 54 TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 54 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+++++|||++|||..++..+.+.|+++++ +.+||+++|+|. +...+|+.+.+.++.
T Consensus 454 ~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 454 PALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFVSKET 509 (553)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEEeccc
Confidence 99999999999999999999999999975 689999999984 568999999998753
No 405
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.22 E-value=2.4e-11 Score=134.34 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=69.4
Q ss_pred ccCCCCHHHHHHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHH
Q 009738 31 HLRGISSGEKKRLSISIEIL----------TQPTVLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLF 99 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~----------~~p~llllDEPt-sgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~ 99 (527)
.+..||||||||++||++++ .+|++++||||| ++||+.+...+.+.|+++ .|.+||+++|++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34679999999999999887 599999999998 789999999999999998 5789999999963 55
Q ss_pred hhcCeEEEEeC-CeE
Q 009738 100 YLFDDLLLLSN-GET 113 (527)
Q Consensus 100 ~~~d~v~~l~~-G~~ 113 (527)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999985 554
No 406
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.22 E-value=3.5e-09 Score=105.32 Aligned_cols=233 Identities=14% Similarity=0.009 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHH
Q 009738 227 LCILSHRSFLNMLRD-MGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSV-GGLPSFIEEHKA 304 (527)
Q Consensus 227 ~~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~-~~~~~f~~er~v 304 (527)
...+.+|+++..+|+ |......+++-++.-++.|..+-....+..+. ...-|..-+.+.+..+ ++. +..--..
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~---~y~~f~~pg~l~~~~~~~~~--~~~~~~~ 81 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV---SYAAFLAAGMVATSAMTAST--FETIYAT 81 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC---CHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 445779999999999 88888888888888888888765431111111 1112222222222111 111 0000123
Q ss_pred HHHhhcCCC--------CChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 305 SYRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV 376 (527)
Q Consensus 305 ~~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v 376 (527)
+.|||.+|. -++..+.+||.+.+.-..++..++...+.++ .|..+. ...+.....+++...+..++|.++
T Consensus 82 ~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~ 159 (253)
T TIGR01291 82 FARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLV 159 (253)
T ss_pred HHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 2678899999998877666666555444433 344332 233333344444555566899999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHH
Q 009738 377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEE 456 (527)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~ 456 (527)
+...++.+....+.+.+..+++.+||.+.+.+.+|.+ +++ +.+++|+.|+.|++-.. +.|
T Consensus 160 a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~-lq~-i~~~nPlt~~v~~~R~~-~~g----------------- 219 (253)
T TIGR01291 160 AALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDV-IQG-MTHFLPLAHSIDDIRPV-MLG----------------- 219 (253)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHH-HHH-HHHHCcHHHHHHHHHHH-HhC-----------------
Confidence 9999999888888888889999999999999999984 677 89999999999997433 211
Q ss_pred HHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 009738 457 ILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKY 494 (527)
Q Consensus 457 ~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~ 494 (527)
-+ ..+.|.++++++++.+++..++....|.
T Consensus 220 -------~~-~~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 220 -------GP-GTQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred -------CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01 0123556778888877777666655443
No 407
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.21 E-value=1.5e-11 Score=129.00 Aligned_cols=106 Identities=22% Similarity=0.315 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
...+.+..++..+||+ +..+.++ +.||+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+.
T Consensus 484 ~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--- 555 (614)
T KOG0927|consen 484 KELEEMRSILGRFGLTGDAQVVPM-----SQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--- 555 (614)
T ss_pred chHHHHHHHHHHhCCCccccccch-----hhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---
Confidence 3456788899999998 4444444 469999999999999999999999999999999999998888888764
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeCh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDA 119 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~ 119 (527)
..++|+++||- ..|.++++++.+..+|.+. +.|+.
T Consensus 556 ~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 556 PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CCceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 35799999995 5789999999998876543 44543
No 408
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.16 E-value=9.6e-10 Score=105.82 Aligned_cols=150 Identities=17% Similarity=0.109 Sum_probs=115.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 009738 315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMGVGTALI 394 (527)
Q Consensus 315 ~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~~~~~ 394 (527)
+.+.++++|.+..++..++..++...+.|++.|++.+ +++.+++.+++...+..+++.++++..++.. ...+...+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~--~~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVG--RFLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--HHHHHHHH
Confidence 4467799999999999999999999999999999874 4556666666667777888888888888654 33444445
Q ss_pred HHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHHHHHHhhCCcCcchhhhHH
Q 009738 395 VLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEEILLKLYGVQLNYCKWWDL 474 (527)
Q Consensus 395 ~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~ 474 (527)
.+.+.++|.+.|.+.+|.+ ++| +.+++|++|+.+++....+.| . ....|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~-~~~-i~~~~P~t~~~~~~r~~~~~~-------------------------~-~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAF-FQA-IHPFLPMTYSVNGLRQLISGG-------------------------N-DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHH-HHH-hhhhCcHHHHHHHHHHHHhCC-------------------------c-HHHHHHHH
Confidence 5666678888999999985 788 999999999999986554321 0 12357888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 009738 475 AALFCILTCYKIVLFATLKYKD 496 (527)
Q Consensus 475 ~iL~~~~v~f~~~~~~~L~~~~ 496 (527)
++|+++.+++.+++....|.+.
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999988888877766543
No 409
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.14 E-value=8e-11 Score=105.38 Aligned_cols=57 Identities=40% Similarity=0.710 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 009738 6 INDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPts 63 (527)
..++++++++.+++.+..++.++.. .+.||||||||++||++|+.+|++++|||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4567899999999999888888653 37899999999999999999999999999996
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.14 E-value=3.3e-10 Score=123.91 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=87.6
Q ss_pred HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 009738 14 IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91 (527)
Q Consensus 14 l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~ 91 (527)
|..+||....- ++....|||||.||+-+|..+=++=. +++||||+-||.+....+++++|++|++.|.|+|++.
T Consensus 465 L~~VGL~YLtL----~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVE 540 (935)
T COG0178 465 LVDVGLGYLTL----SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVE 540 (935)
T ss_pred HHHcCcCcccc----cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEe
Confidence 34456654322 12234699999999999999977653 6899999999999999999999999999999999999
Q ss_pred cCChhHHHhhcCeEEEE------eCCeEEEEeChhhHHH
Q 009738 92 HQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAVK 124 (527)
Q Consensus 92 H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~~ 124 (527)
||+ +....+|+++=+ +.|+|++.|+++++.+
T Consensus 541 HDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 541 HDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred cCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 994 678889999987 4699999999998763
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.13 E-value=1e-10 Score=126.55 Aligned_cols=99 Identities=29% Similarity=0.351 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCcccccccccC-cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQACAETKIGN-WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~-~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
++.+.++|.++||.+..++.=+. +.-+.||+||||||++||.|+++|++++|||-|++||+.+...+.+.+++-. .+.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~ 565 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDA 565 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCC
Confidence 46788999999999888764332 2346899999999999999999999999999999999999999999998622 368
Q ss_pred EEEEEecCChhHHHhhcCeEEEE
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
|||.+.|++. +..+.++.+-+
T Consensus 566 tvISV~Hr~t--l~~~h~~~l~l 586 (604)
T COG4178 566 TVISVGHRPT--LWNFHSRQLEL 586 (604)
T ss_pred EEEEeccchh--hHHHHhhheee
Confidence 9999999974 55556665544
No 412
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.10 E-value=2.1e-08 Score=98.25 Aligned_cols=221 Identities=10% Similarity=0.093 Sum_probs=130.7
Q ss_pred HhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhh-hhHHHHHHHHHHHHHHhhhHH-HHHHHHH--HHHHhhcCCCC
Q 009738 239 LRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYG-RPKCVAFIYGFLICLSVGGLP-SFIEEHK--ASYRERISCHY 314 (527)
Q Consensus 239 ~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~-r~~~l~f~~~~~~~~~~~~~~-~f~~er~--v~~rE~~~g~Y 314 (527)
+|||.....-+.+-+++-++.+.+|-+- .+.+..+. -.+.+ .....+.+..... ....||. .+.|=+ ..=.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~er~~G~l~rl~-~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-VTHNRGATFIPVLM---ALAAISTAFTGQAIAVARDRRYGALKRLG-ATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-cCCcchhHhhHHHH---HHHHHHHHHHHHHHHHHHHHHhCHHHHHh-cCCC
Confidence 6899988888888887777777777652 11111111 11111 1111111111111 2233333 222222 2223
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhch---hhHHHHHHHH
Q 009738 315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVP---NVLMGMGVGT 391 (527)
Q Consensus 315 ~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~---~~~~a~~~~~ 391 (527)
+...|+++|.+..++..+...+++ .++++..|++...... ..++...+...++.+++.+++++++ +.+.+..+++
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 678999999998888876665555 4556777888654332 2222333333344455666666554 4444466777
Q ss_pred HHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHHHHHHhhCCcCcchhh
Q 009738 392 ALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEEILLKLYGVQLNYCKW 471 (527)
Q Consensus 392 ~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w 471 (527)
....+++++||.+.|.+.+|.| ++| +.+++|++|+.+++-.- +.+ +.+ ....|
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~-lq~-i~~~~P~t~~~~~~r~~-~~~-----------------------~~~-~~~~~ 207 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTW-IKW-FVRVQPSSYATEALRQA-ATV-----------------------SVD-TFGAV 207 (232)
T ss_pred HHHHHHHHHhheeeecccccHH-HHH-HHHhCcHHHHHHHHHHH-HcC-----------------------CCC-hhhHH
Confidence 8888899999999999999985 888 99999999999987432 111 001 11257
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 009738 472 WDLAALFCILTCYKIVLFATLK 493 (527)
Q Consensus 472 ~~~~iL~~~~v~f~~~~~~~L~ 493 (527)
.++++++++.+++..++....|
T Consensus 208 ~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 208 RDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888887777665554443
No 413
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=1e-10 Score=113.85 Aligned_cols=96 Identities=20% Similarity=0.244 Sum_probs=76.6
Q ss_pred HHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHh-CC
Q 009738 11 EETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIAL-DG 84 (527)
Q Consensus 11 ~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l--~~~p~llllDEP---tsgLD~~~~~~i~~~l~~l~~-~~ 84 (527)
+++++.+|+.+.. .+++|.|+++++.+++++ +.+|+++||||| |+++|+...... .++.+.+ .|
T Consensus 74 ~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~~l~~~~~ 143 (222)
T cd03285 74 DCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAEYIATQIK 143 (222)
T ss_pred ceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHHHHHhcCC
Confidence 4455555554322 357999999999999999 899999999999 999999888643 3455554 47
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
.++|+++|+ .++.+++|++..+++|++...++
T Consensus 144 ~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 144 CFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 899999996 57899999999999999987764
No 414
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.08 E-value=5.1e-08 Score=96.82 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccC-CCChhhhhh--hhHHHHHHHHHHHH----HHhhhHHH
Q 009738 225 KQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIYG--RPKCVAFIYGFLIC----LSVGGLPS 297 (527)
Q Consensus 225 ~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l-~~~~~~i~~--r~~~l~f~~~~~~~----~~~~~~~~ 297 (527)
+++.++++|.++...|||..+...+++-+++-++.|.+|-.. +.+.....+ ..-..|...+.+.+ .++..-..
T Consensus 2 ~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~~~~ 81 (253)
T TIGR03861 2 ICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQSSLS 81 (253)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 678999999999999999999999999999999999888542 110000000 00111222222111 11111112
Q ss_pred HHHHHH--HHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 298 FIEEHK--ASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMV 375 (527)
Q Consensus 298 f~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~ 375 (527)
...||. ...+=+... -+...+.++++++..-..++..++...+.+. .|.+.....++.....+++...+..+++.+
T Consensus 82 ~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~ 159 (253)
T TIGR03861 82 MVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLA 159 (253)
T ss_pred hHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 222322 222222223 3677899999999987766665554444432 355554333433333444445556788999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHhhccccCCCCC---CcccccccccccCHHHHHHHHHH
Q 009738 376 VALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL---PKFFWQYPMSYITFAAWAIEGQF 433 (527)
Q Consensus 376 v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i---p~~~w~w~~~yiSp~~Y~~~~l~ 433 (527)
++.++++......+.+.++.+++.++|.+.+.+.+ |. |++| +.++||+.|..|++-
T Consensus 160 la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~-~l~~-i~~~nPl~~~i~~~R 218 (253)
T TIGR03861 160 LSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST-WLYW-ICALNPFTHAVELVR 218 (253)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH-HHHH-HHHhCcHHHHHHHHH
Confidence 99998888777777777888888899999888776 55 3666 899999999998884
No 415
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.05 E-value=6.9e-10 Score=130.54 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=70.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhh
Q 009738 30 WHLRGISSGEKKRLSISIEILT--------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~~--------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~ 101 (527)
..+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|..+++.|++|++++|.+ ....++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4567899999999999999996 8999999999999999999999999999998999999999974 445555
Q ss_pred cCeEEEEeC
Q 009738 102 FDDLLLLSN 110 (527)
Q Consensus 102 ~d~v~~l~~ 110 (527)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
No 416
>PRK03918 chromosome segregation protein; Provisional
Probab=99.04 E-value=6e-10 Score=129.66 Aligned_cols=78 Identities=24% Similarity=0.252 Sum_probs=68.7
Q ss_pred ccCCCCHHHHHH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 31 HLRGISSGEKKR------LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 31 ~~~~lSgGer~R------l~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|..++..+.++|+++|++ ++...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence 457899999995 5555678899999999999999999999999999999887788999999996 36789999
Q ss_pred EEEEeC
Q 009738 105 LLLLSN 110 (527)
Q Consensus 105 v~~l~~ 110 (527)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999973
No 417
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.03 E-value=3.3e-10 Score=114.88 Aligned_cols=109 Identities=26% Similarity=0.357 Sum_probs=91.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC-IALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~-l~~~~~ 85 (527)
.+.+++.++.+.|.+...-+-|+-.+-.||.|||||+++-.|++-+-+|+++||-.+.-||.-+....+.+-. ++++|+
T Consensus 421 ~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGK 500 (546)
T COG4615 421 PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGK 500 (546)
T ss_pred hHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCC
Confidence 4568888999888765444333334567999999999999999999999999999999999999998876654 566799
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEe
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
||+.++||. .-+..+||++.+.+|+++..-
T Consensus 501 TI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 501 TIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred eEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999995 468899999999999998754
No 418
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=5.5e-10 Score=112.14 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc-
Q 009738 33 RGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF- 102 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~- 102 (527)
+-+|+||||++++|++|+ .+|+++++||||++||+..+..+.+.++++. . +++++|+. ..+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q-~ii~~~~~-~~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---Q-TFVTTTDL-ADFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---C-EEEEeCCc-hhccchhc
Confidence 458999999999999986 7999999999999999999999999998753 3 55555553 3566666
Q ss_pred --CeEEEEeCCeE
Q 009738 103 --DDLLLLSNGET 113 (527)
Q Consensus 103 --d~v~~l~~G~~ 113 (527)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68899999985
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.2e-09 Score=111.67 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
+.+.+.|-.+||...++|. .++.||||||-||++|..-+..|++|||||||++||..+...+.+.|.+. +..|
T Consensus 682 q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgV 754 (807)
T KOG0066|consen 682 QEARKQLGTFGLASHAHTI----KIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGV 754 (807)
T ss_pred HHHHHHhhhhhhhhccceE----eeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcE
Confidence 3466778888998877764 35689999999999999999999999999999999999988888887764 4578
Q ss_pred EEEecCChhHHHhhcCeEEEEeC
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
|+++|+-+ -+.+.-..+.++.+
T Consensus 755 i~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 755 IMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred EEEecccc-eeeecCceEEEEcc
Confidence 99999954 23333344444443
No 420
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=6.4e-09 Score=121.28 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred ccCCCCHHHHHHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-CEEEEEecCChhHHHhh
Q 009738 31 HLRGISSGEKKRLSI------SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LD-G-RIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 31 ~~~~lSgGer~Rl~i------a~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~-~-~tvi~~~H~~~~~i~~~ 101 (527)
.+..||||||+|+++ |++++.+|++++|||||+|||+..+..+.+.++... .. | .++|+++|++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999963 5578
Q ss_pred cCeEEEEe
Q 009738 102 FDDLLLLS 109 (527)
Q Consensus 102 ~d~v~~l~ 109 (527)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 421
>PRK15066 inner membrane transport permease; Provisional
Probab=98.94 E-value=3.1e-07 Score=91.45 Aligned_cols=240 Identities=15% Similarity=0.167 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHH----Hhhh-HHH
Q 009738 224 WKQLCILSHRSFLNMLRDMGYY-WLRIVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICL----SVGG-LPS 297 (527)
Q Consensus 224 ~~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~----~~~~-~~~ 297 (527)
++-+..+.+|..+...||+... ..-+++.++..++.|.++-....+..+.. -..|+..+.+... +... ...
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~---y~~fl~pGll~~~~~~~~~~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFS---YMQFIVPGLIMMSVITNSYSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999998543 33345555666666765532111101111 1122222222211 1111 122
Q ss_pred HHHHHHH-HHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 298 FIEEHKA-SYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV 376 (527)
Q Consensus 298 f~~er~v-~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v 376 (527)
+..+|.. ..++....=-+.+.+.+++++...-..++..++...+.+...|.+.. ....+...+++...+....+.++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 11111222347778999999988766565555554444444455532 22222222222222233447777
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHH
Q 009738 377 ALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEE 456 (527)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~ 456 (527)
+...++......+.+.+..+++..+|.+.+.+++|.+ ++| +.++||+.|..|++-.. +.
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~-l~~-i~~~nPlt~~v~~~R~~-~~------------------ 220 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPF-WQG-VSKLNPIVYMVNAFRYG-FL------------------ 220 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHH-HHH-HHHHCcHHHHHHHHHHH-Hc------------------
Confidence 7777777666777788888889999999999999974 576 99999999999988432 11
Q ss_pred HHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 009738 457 ILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYKD 496 (527)
Q Consensus 457 ~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~ 496 (527)
|.+ +.+.|.++++++++.+++..++....|.+.
T Consensus 221 ------g~~-~~~~~~~l~~l~~~~~v~~~la~~~~~r~~ 253 (257)
T PRK15066 221 ------GIS-DVPLWLAFAVLLVFIVVLYLLAWYLLERGR 253 (257)
T ss_pred ------CCC-CccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111 122477888888888877777766655443
No 422
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.7e-10 Score=113.18 Aligned_cols=105 Identities=22% Similarity=0.367 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+.++..+|.-+|.+. .+.++....+|||.|-||++||||..+|.+|.|||||+.||-....-+-+.|+.+. +|
T Consensus 389 EarARRILAGLGFsk----EMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KT 461 (807)
T KOG0066|consen 389 EARARRILAGLGFSK----EMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KT 461 (807)
T ss_pred hhHHHHHHhhcCCCh----hHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---he
Confidence 456677888888753 22334455799999999999999999999999999999999999888888887775 68
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEE-EeCh
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIY-FGDA 119 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~-~G~~ 119 (527)
.++++|+- ..+-..|..|+.|++-++-| .|..
T Consensus 462 LLIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 462 LLIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eEEEeccc-chHHHHHHHHhhhhhhhhhhhcchH
Confidence 99999995 68999999999998876543 3443
No 423
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=5.9e-09 Score=125.64 Aligned_cols=69 Identities=23% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecCChhHHHhh
Q 009738 33 RGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 33 ~~lSgGer~------Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~~~tvi~~~H~~~~~i~~~ 101 (527)
..||||||| |++||++++.+|++++|||||+|||+.+...+.+.|.++.. .|.++|+++|++ ..+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHH
Confidence 469999999 99999999999999999999999999999999999988742 378999999996 567766
Q ss_pred c
Q 009738 102 F 102 (527)
Q Consensus 102 ~ 102 (527)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 5
No 424
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.81 E-value=1.3e-08 Score=97.66 Aligned_cols=86 Identities=16% Similarity=0.106 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..+++++| |+..+.+++.+|+++++|||++|+|+.....+.+ .++.+.+.+.++|+++|++ ++...+|++..+..|
T Consensus 90 s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~ 166 (202)
T cd03243 90 STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNL 166 (202)
T ss_pred eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEE
Confidence 34565555 5666688889999999999999999999888765 5677777789999999984 567789999999999
Q ss_pred eEEEEeChhh
Q 009738 112 ETIYFGDAKM 121 (527)
Q Consensus 112 ~~~~~G~~~~ 121 (527)
++...++..+
T Consensus 167 ~~~~~~~~~~ 176 (202)
T cd03243 167 HMEELITTGG 176 (202)
T ss_pred EEEEEecCCe
Confidence 9988876543
No 425
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.81 E-value=5.9e-09 Score=124.68 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=67.0
Q ss_pred cccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeE
Q 009738 30 WHLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL 105 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v 105 (527)
..+..||||||+|++||++++ ..|++++|||||+|||+.++..+.+.|+.+++. .++|+++|++. ....||++
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChh--HHHHhhhH
Confidence 346789999999999999985 567999999999999999999999999998754 78999999975 35779999
Q ss_pred EEEe
Q 009738 106 LLLS 109 (527)
Q Consensus 106 ~~l~ 109 (527)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8764
No 426
>PRK00064 recF recombination protein F; Reviewed
Probab=98.81 E-value=1.2e-08 Score=106.62 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=65.4
Q ss_pred cCCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 32 LRGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
...+|.||+|++.+|+.|+ .+|++++||||+++||+..+..+.+.++++ +..+++|+|++. .+...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhh
Confidence 4579999999999999886 699999999999999999999999988754 357888888853 445543
Q ss_pred --CeEEEEeCCeE
Q 009738 103 --DDLLLLSNGET 113 (527)
Q Consensus 103 --d~v~~l~~G~~ 113 (527)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47889999986
No 427
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.80 E-value=1.3e-08 Score=95.25 Aligned_cols=109 Identities=23% Similarity=0.298 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~t 86 (527)
+|-+++++.+++.-. .+.+.+|-||||||.|++.|+.-=++|+|||-|-.||..++..+.+.+++-.++ |.|
T Consensus 128 ~Rre~LI~iLDIdl~-------WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~Rgat 200 (291)
T KOG2355|consen 128 ERREKLIDILDIDLR-------WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGAT 200 (291)
T ss_pred hHhhhhhhheeccce-------EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcE
Confidence 455667777766422 223469999999999999999988999999999999999999999999998875 889
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|+..+|-- +-+.....+++.+++|+++-.-+.+++.+
T Consensus 201 IVYATHIF-DGLe~Wpthl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 201 IVYATHIF-DGLETWPTHLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred EEEEeeec-cchhhcchhEEEecCCeeeeccccchhhh
Confidence 99999984 56788899999999999987666555544
No 428
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.78 E-value=5.2e-09 Score=99.07 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|+++|++ ++.+.+|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence 47777776433332 24599999999999999999887765 566777774 88999999995 577888753333444
Q ss_pred eEE
Q 009738 112 ETI 114 (527)
Q Consensus 112 ~~~ 114 (527)
+..
T Consensus 138 ~~~ 140 (185)
T smart00534 138 HMS 140 (185)
T ss_pred EEE
Confidence 443
No 429
>PRK02224 chromosome segregation protein; Provisional
Probab=98.72 E-value=3.1e-08 Score=115.43 Aligned_cols=78 Identities=28% Similarity=0.357 Sum_probs=66.9
Q ss_pred cCCCCHHHHH------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCChhHH
Q 009738 32 LRGISSGEKK------RLSISIEILTQ-----P-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIHQPSSHL 98 (527)
Q Consensus 32 ~~~lSgGer~------Rl~ia~~l~~~-----p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~-tvi~~~H~~~~~i 98 (527)
+..||||||+ |++++++++.+ | .++++||||+|||+..+..+.+.|+.+...|. +||+++|++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 89999888864 3 67999999999999999999999999987664 7999999973 3
Q ss_pred HhhcCeEEEEeCC
Q 009738 99 FYLFDDLLLLSNG 111 (527)
Q Consensus 99 ~~~~d~v~~l~~G 111 (527)
...+|+++.+.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999643
No 430
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.72 E-value=2.3e-08 Score=119.63 Aligned_cols=77 Identities=17% Similarity=0.154 Sum_probs=67.8
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEE
Q 009738 31 HLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL 106 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~ 106 (527)
.+..||||||++++||.+++. .|++++||||++|||+..+..+.+.|+++++. ..+|+++|++. ....+|+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~-~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGE-AQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCC-CeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 67999999999999999999999999998654 67899999963 668999999
Q ss_pred EEeC
Q 009738 107 LLSN 110 (527)
Q Consensus 107 ~l~~ 110 (527)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
No 431
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=101.05 Aligned_cols=99 Identities=20% Similarity=0.225 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~------~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++.+.|+.++|.|..+..=| -...+.||+|||||+++||.+.++|++-+|||-||.+|......+.+.+++
T Consensus 537 d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~- 615 (659)
T KOG0060|consen 537 DEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE- 615 (659)
T ss_pred HHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH-
Confidence 4567788888888777654333 123467999999999999999999999999999999999888888776654
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.|.|.|-+.|.++ +.+.=|.++-|+.
T Consensus 616 --~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 616 --MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred --cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 5899999999975 4554577777764
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.57 E-value=1.7e-07 Score=96.11 Aligned_cols=100 Identities=26% Similarity=0.371 Sum_probs=83.6
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Q 009738 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVV 88 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi 88 (527)
+.++|+..||.+--- --...++||-|||.|+.||..++..|.+++.||--+.||+.++..+.+-|.+++++ |.|.+
T Consensus 486 AveILnraGlsDAvl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTli 562 (593)
T COG2401 486 AVEILNRAGLSDAVL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562 (593)
T ss_pred HHHHHHhhccchhhh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEE
Confidence 567888888865322 12245679999999999999999999999999999999999999999999999976 99999
Q ss_pred EEecCChhHHHhh-cCeEEEEeCCeE
Q 009738 89 CSIHQPSSHLFYL-FDDLLLLSNGET 113 (527)
Q Consensus 89 ~~~H~~~~~i~~~-~d~v~~l~~G~~ 113 (527)
+++|+| +.+-.+ -|+++++.=|.+
T Consensus 563 vvThrp-Ev~~AL~PD~li~vgYg~v 587 (593)
T COG2401 563 VVTHRP-EVGNALRPDTLILVGYGKV 587 (593)
T ss_pred EEecCH-HHHhccCCceeEEeecccc
Confidence 999997 355555 588888876654
No 433
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.56 E-value=5.4e-07 Score=87.44 Aligned_cols=88 Identities=23% Similarity=0.352 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT----QPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.+.+.+...++... .+|||||++++||.-++. ..++++||||.++||...+..+.+.|+++.++
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~ 189 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ 189 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 445566666666542 499999999999877643 66899999999999999999999999998755
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.-+|+++|++ ..+..+|+.+-+.
T Consensus 190 -~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 190 -SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred -cccccccccc--ccccccccccccc
Confidence 5688889995 5888899888764
No 434
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.55 E-value=1.2e-07 Score=97.26 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++..+++++.+.|.+..|+.+. .|||||-||.+||++-+++.++.++|||.+-||...+.+....|+.+..-++=
T Consensus 191 r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~Y 265 (592)
T KOG0063|consen 191 RDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRY 265 (592)
T ss_pred cccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCe
Confidence 3456788999999998888876 49999999999999999999999999999999999999999999999998899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
||++.||. +.+-.+.|-+..|..
T Consensus 266 iIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 266 IIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred EEEEEeec-hHHHhhhcceeEEec
Confidence 99999996 467778898888875
No 435
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=1.2e-07 Score=99.11 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 33 RGISSGEKKRLSISIEILT---------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
..+|.||+|++.+|..|+. +|+|+|||||+++||+..+..+++.|++. |..+++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 4689999999999999999 99999999999999999999999999764 678999999863
No 436
>PRK14079 recF recombination protein F; Provisional
Probab=98.53 E-value=1.8e-07 Score=97.31 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcC
Q 009738 33 RGISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d 103 (527)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.| ..+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCc
Confidence 358999999999999999 899999999999999999999999888643 24555555443 4699
Q ss_pred eEEEEeCCeEEE
Q 009738 104 DLLLLSNGETIY 115 (527)
Q Consensus 104 ~v~~l~~G~~~~ 115 (527)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988743
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.48 E-value=2.5e-07 Score=88.98 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQP 94 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~~tvi~~~H~~ 94 (527)
+.+|+|++|+ ..+.+++.+|+++++|||++|+|+.....+. +.++.+.+.|.++|++||+.
T Consensus 90 S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 90 STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 3589998865 5556788999999999999999998766654 56788888899999999994
No 438
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=6.4e-07 Score=104.56 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=69.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHh------C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 31 HLRGISSGEKKRLSISIEILT------Q--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~------~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
.+..|||||+-.++||.+|+. + -+.++|||||..||+.....+++.|..+...+.+|+++||++ ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 567899999998888777654 5 689999999999999999999999999999999999999994 678899
Q ss_pred CeEEEEeC
Q 009738 103 DDLLLLSN 110 (527)
Q Consensus 103 d~v~~l~~ 110 (527)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998874
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.43 E-value=5.4e-07 Score=84.79 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=66.1
Q ss_pred cccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCChh----
Q 009738 30 WHLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLD---SASAFFVIQVLKCIALDGRIVVCSIHQPSS---- 96 (527)
Q Consensus 30 ~~~~~lSgGer~------Rl~ia~~l~~~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~---- 96 (527)
..+..+|+|++| +.........+|+++++|||++.+| ...+..+.+.++.+++.|.|+|+++|+...
T Consensus 67 ~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~ 146 (187)
T cd01124 67 ADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTG 146 (187)
T ss_pred cCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcc
Confidence 345578999998 4445555667999999999999999 888888999999999889999999998643
Q ss_pred ----HHHhhcCeEEEEe
Q 009738 97 ----HLFYLFDDLLLLS 109 (527)
Q Consensus 97 ----~i~~~~d~v~~l~ 109 (527)
.+..++|.++.|+
T Consensus 147 ~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 147 FGGGDVEYLVDGVIRLR 163 (187)
T ss_pred cCcCceeEeeeEEEEEE
Confidence 2678899999887
No 440
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.39 E-value=3.6e-05 Score=76.33 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHH
Q 009738 317 AVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA-LLVPNVLMGMGVGTALIV 395 (527)
Q Consensus 317 ~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~-~~~~~~~~a~~~~~~~~~ 395 (527)
..+++++.+...-...+...+...+..+..|... ...+..+...+.+......+++.+++ ....+...+..++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPF-LGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566677666666655555555566666666322 22333444444444444556666544 355677788888888888
Q ss_pred HHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHHHHHHhhCCcCcchhhhHHH
Q 009738 396 LMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEEILLKLYGVQLNYCKWWDLA 475 (527)
Q Consensus 396 ~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~~ 475 (527)
++..++|.+.|.+.+|. |.+| +.+++|..|+.+++-.....+. . ..+.|.+++
T Consensus 210 ~~~~l~g~~~p~~~~p~-~~~~-i~~~~P~t~~~~~~~~~~~~~~------------------------~-~~~~~~~~~ 262 (286)
T COG0842 210 PLGFLSGVFFPLELLPA-WLQG-ISYINPLTYAIDALRYVYLGGW------------------------R-NDGIWISLL 262 (286)
T ss_pred HHHHHccccCchhhhHH-HHHH-HHHHccHHHHHHHHHHHHhCCC------------------------c-hhhHHHHHH
Confidence 89999999999999998 4677 9999999999999854432110 1 112577888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 009738 476 ALFCILTCYKIVLFATLKYKDK 497 (527)
Q Consensus 476 iL~~~~v~f~~~~~~~L~~~~~ 497 (527)
+++++.+++.+++...++.+.+
T Consensus 263 ~l~~~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 263 ILLLFAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999998888888776554
No 441
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.36 E-value=2.2e-06 Score=82.06 Aligned_cols=71 Identities=25% Similarity=0.213 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCCEEEEEecCChhHHHhh--cCeEEEE
Q 009738 37 SGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYL--FDDLLLL 108 (527)
Q Consensus 37 gGer~Rl~ia~~l~~--~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~~~tvi~~~H~~~~~i~~~--~d~v~~l 108 (527)
..+++|+.-+...+. +|+++++|||++|+|+..+..+. +.++++.+.|.++|+++|++. .+..+ .+++-.+
T Consensus 88 ~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 88 YAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 345677777777777 99999999999999999998775 478888878999999999964 44443 3444443
No 442
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.34 E-value=1.4e-06 Score=84.49 Aligned_cols=64 Identities=33% Similarity=0.474 Sum_probs=54.7
Q ss_pred cCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 32 LRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
...+|.|+||.+.+...+...+ .++++|||-++|+|..+..+++.|+++.+.+.-+|+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 4568999999999999998877 899999999999999999999999988876788999999974
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.32 E-value=8.7e-07 Score=86.01 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=63.3
Q ss_pred CCCCHHHHHHH----HHHHHH--HhCCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCChhHHHhhc
Q 009738 33 RGISSGEKKRL----SISIEI--LTQPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 33 ~~lSgGer~Rl----~ia~~l--~~~p~llllDEP---tsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~ 102 (527)
.++|+|+.+.. .++..+ +.+|++++|||| |+++|.... ....++.+.+. +.++|+++|+. ++.+++
T Consensus 84 ~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~ 159 (216)
T cd03284 84 DDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELE 159 (216)
T ss_pred hhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHh
Confidence 35777876642 355554 569999999999 888887552 23455566665 88999999994 678899
Q ss_pred CeEEEEeCCeEEEEeChhhH
Q 009738 103 DDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 103 d~v~~l~~G~~~~~G~~~~~ 122 (527)
|++.-+.+|++...++.++.
T Consensus 160 ~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 160 GKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred hcCCCeEEEEEEEEeeCCeE
Confidence 99888888988877665544
No 444
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.28 E-value=9.9e-07 Score=90.79 Aligned_cols=95 Identities=21% Similarity=0.381 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEE
Q 009738 9 IVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA-LDGRIV 87 (527)
Q Consensus 9 ~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~~~tv 87 (527)
-+.++++-+.+++..|..+. +|||||+||+++|..|=..+++++.|||.+=||+..+...-+.+++.- +.++|-
T Consensus 436 F~~dvmkpL~ie~i~dqevq-----~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakkta 510 (592)
T KOG0063|consen 436 FVNDVMKPLQIENIIDQEVQ-----GLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTA 510 (592)
T ss_pred HHHhhhhhhhHHHHHhHHhh-----cCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchh
Confidence 46677888888887777664 699999999999999999999999999999999999999999999865 557899
Q ss_pred EEEecCChhHHHhhcCeEEEEe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.++.|+-. -.-.++||+++..
T Consensus 511 fvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 511 FVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hhhhhHHH-HHHhhcceeEEEe
Confidence 99999943 3345788887754
No 445
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.4e-06 Score=104.97 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 32 LRGISSGEKKRLS----ISIE--------ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 32 ~~~lSgGer~Rl~----ia~~--------l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..+||||||||+. +|++ +..+|++++|||||+|||+.++..+++.++++ |.++|+++|.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4689999999996 5644 45799999999999999999999999999887 6788888887
No 446
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.23 E-value=9.9e-07 Score=92.88 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCcccccccccC----cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQACAETKIGN----WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~----~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+..+.+|+.+.|++......|= ....-||||||||+++||.+-++|+.-+|||-||.+.+.-...+.+..|+ .
T Consensus 582 ~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~ 658 (728)
T KOG0064|consen 582 QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---A 658 (728)
T ss_pred HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---c
Confidence 4566788888888777665541 12346999999999999999999999999999999998888887776654 5
Q ss_pred CCEEEEEecCChh
Q 009738 84 GRIVVCSIHQPSS 96 (527)
Q Consensus 84 ~~tvi~~~H~~~~ 96 (527)
|.+.+-++|+|+-
T Consensus 659 gi~llsithrpsl 671 (728)
T KOG0064|consen 659 GISLLSITHRPSL 671 (728)
T ss_pred CceEEEeecCccH
Confidence 8899999999963
No 447
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.23 E-value=9.6e-07 Score=100.72 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=64.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
...+|+||++++.|++++ .+|+++++|||++|+|+.....+.. .++.+.+.|.++|++||++ +.....+|+..+. +
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~ 464 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-N 464 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-E
Confidence 456999999999999988 8999999999999999999988864 6777888889999999995 3344444544443 4
Q ss_pred CeEEE
Q 009738 111 GETIY 115 (527)
Q Consensus 111 G~~~~ 115 (527)
+.+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 55555
No 448
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.14 E-value=5.1e-06 Score=80.50 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=51.3
Q ss_pred CCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC---CCEEEEEecCCh
Q 009738 34 GIS--SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD---GRIVVCSIHQPS 95 (527)
Q Consensus 34 ~lS--gGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~~---~~tvi~~~H~~~ 95 (527)
++| .-|.||++++++++.+|+++++|||++|+|+.....+ .+.++++.+. +.++|+++|++.
T Consensus 88 ~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 88 GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 455 5678999999999999999999999999999865555 5688888764 248999999953
No 449
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.12 E-value=6.3e-06 Score=68.53 Aligned_cols=48 Identities=27% Similarity=0.435 Sum_probs=36.4
Q ss_pred cCCCCHHHHHH-HHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 32 LRGISSGEKKR-LSISIEI------LT------QPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 32 ~~~lSgGer~R-l~ia~~l------~~------~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
..++||||||. +.++.++ -. .|++++||||+++||+..+..+++.+++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 45799999954 4333332 22 3789999999999999999999999874
No 450
>PRK13695 putative NTPase; Provisional
Probab=98.01 E-value=1.2e-05 Score=75.26 Aligned_cols=78 Identities=10% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEP--TSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
..+||+++.+..+.+..+.+|+++++||| +.++| ....+.+.++.+.|+++|+++|+. .+....|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 45899999999999999999999999995 33444 445677777767789999999983 56678999999999
Q ss_pred CeEEEE
Q 009738 111 GETIYF 116 (527)
Q Consensus 111 G~~~~~ 116 (527)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 451
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.01 E-value=9.9e-06 Score=69.05 Aligned_cols=54 Identities=15% Similarity=0.408 Sum_probs=46.2
Q ss_pred CCCCCCcHHHHHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q 009738 447 PGDPKLKGEEILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYKDKASKL 501 (527)
Q Consensus 447 ~~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~~~~~ 501 (527)
+|..+++|+++|+..|++..++ .|+|+||+++++++|.++.++++.+.+.....
T Consensus 26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~ 79 (103)
T PF06422_consen 26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSG 79 (103)
T ss_pred CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 4567889999999888988654 89999999999999999999998877765554
No 452
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.00 E-value=7.5e-06 Score=93.31 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=56.4
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCCEEEEEecCCh
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
...+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+ ...++.+.+.|.++|++||+..
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 456999999999998876 89999999999999999999999 5788888888999999999964
No 453
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.95 E-value=1e-05 Score=78.23 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 009738 39 EKKRLSISIEILTQPTVLLLDEPT-----SGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 39 er~Rl~ia~~l~~~p~llllDEPt-----sgLD~~~~~~i~~~l~~l~~ 82 (527)
|++++.||++++.+|+++++|||| +|||+..+..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
No 454
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=97.94 E-value=0.00018 Score=65.78 Aligned_cols=128 Identities=16% Similarity=-0.031 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 301 EHKASYRERISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFS--HYCHFCLSLFCCVSIVETCMMVVAL 378 (527)
Q Consensus 301 er~v~~rE~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~--~f~~f~l~~~~~~~~~~~~~~~v~~ 378 (527)
|+-.+.|-+..-. +.+.++++|.+...-..++..++..++.+. .|.+.... ..+.+.+...+.......++..++.
T Consensus 17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~ 94 (152)
T TIGR01248 17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL 94 (152)
T ss_pred HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665554 678999999999998888887777666654 37776531 1222222222223333444555544
Q ss_pred hchhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHH
Q 009738 379 LVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQF 433 (527)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~ 433 (527)
..++.+ +......+..+++..+|.+.|.+++|.| .+| +.+++|+.|+.+++-
T Consensus 95 ~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~w-lq~-ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 95 RKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDW-AQP-LIAHQPISPAIEACA 146 (152)
T ss_pred HcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHH-HHH-HHhhCCccHHHHHHH
Confidence 444443 3333466677777888888999999984 677 999999999999884
No 455
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.89 E-value=0.0014 Score=64.72 Aligned_cols=191 Identities=9% Similarity=0.054 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccC-CCChhhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 009738 228 CILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNV-GLSNPAIYGRPKCVAFIYGFLICLSVGGLPSFIEEHKASY 306 (527)
Q Consensus 228 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l-~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~f~~er~v~~ 306 (527)
+.+.||.++...|.|..+..-.+..++.|+.. ..+.+. +....+..+..+.+.+......+ .+|.. --..+.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~p~l--~~~~ia 74 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPWVFLF----LIPAI--TMRSFA 74 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHHHHHH----HHHHH--HHHHHH
Confidence 46889999999999998877777766666442 222110 10111111222221111111111 11211 124556
Q ss_pred HhhcCCCC--------ChhHHHHHHHHHHHHHHHHHHh---hhhhhhhcccc--ccCCHHHHHHHHHHHHHHHHHHHHHH
Q 009738 307 RERISCHY--------GEAVFVLSNFLSSFPFLVILSI---SSGTILHYMVQ--FHPGFSHYCHFCLSLFCCVSIVETCM 373 (527)
Q Consensus 307 rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~---if~~i~Y~m~g--l~~~~~~f~~f~l~~~~~~~~~~~~~ 373 (527)
+||++|.. +.+...++|.++-+-..++..+ ++....++... -..+...++...+..++...+..++|
T Consensus 75 ~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~aig 154 (240)
T TIGR03518 75 EERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYTAIG 154 (240)
T ss_pred HHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777764 4578899999988655443222 12212111111 11233444333344444455667899
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHhhccccCCCCC--CcccccccccccCHHHHHHH
Q 009738 374 MVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDL--PKFFWQYPMSYITFAAWAIE 430 (527)
Q Consensus 374 ~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~i--p~~~w~w~~~yiSp~~Y~~~ 430 (527)
.++++++.+...|..++..+..+ ++.|+.. ..++ |.+ ..| +.|+||..|-.+
T Consensus 155 ~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~-l~~~~~~~~-~~~-l~~~sp~~~~~~ 208 (240)
T TIGR03518 155 LFASSLTENQIVAFIIAVFLCFL--FYFGFDG-LASLLWGGS-AYT-ISELGLSYHYES 208 (240)
T ss_pred HHHHHHhchHHHHHHHHHHHHHH--HHHHHHH-HhhhcchhH-HHH-HHHcCHHHHHHH
Confidence 99999988888776554333222 2222211 2233 442 345 899999666433
No 456
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=97.83 E-value=0.0062 Score=60.67 Aligned_cols=163 Identities=11% Similarity=0.179 Sum_probs=82.7
Q ss_pred HHHHhhcCCC--------CChhHHHHHHHHHHHHHHHH--HHhhhh--h-hhhcc-ccccCCHHHHHHHHHHHHHHHH--
Q 009738 304 ASYRERISCH--------YGEAVFVLSNFLSSFPFLVI--LSISSG--T-ILHYM-VQFHPGFSHYCHFCLSLFCCVS-- 367 (527)
Q Consensus 304 v~~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~--~~~if~--~-i~Y~m-~gl~~~~~~f~~f~l~~~~~~~-- 367 (527)
.+.+|+++|. .+.+.++++|.++.+...++ ...+.+ . ..++. .|...+...+....+.......
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 5556666653 56788999999999876322 111111 1 11222 3344444444433322222111
Q ss_pred -HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhcccc-CCCCCCccccccc----ccccCHHHHHHHHHHHhhhcCCc
Q 009738 368 -IVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFR-GVSDLPKFFWQYP----MSYITFAAWAIEGQFKNDMIGLE 441 (527)
Q Consensus 368 -~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i-~~~~ip~~~w~w~----~~yiSp~~Y~~~~l~~nef~g~~ 441 (527)
+..+++.++++.+++...|...+..+............ ..++.+. ..|. +.+++|..+- +........+.
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~- 244 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEA--LPWVISPNLSFLSPFSPF-NLLIGSILGGG- 244 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhhhhHhHHHHcChHHHH-HHHHHHhhccc-
Confidence 34788899999988877777666554444433332221 1111111 1120 2444554321 11111111000
Q ss_pred cCCCCCCCCCCcHHHHHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 009738 442 FDPAVPGDPKLKGEEILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLK 493 (527)
Q Consensus 442 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~ 493 (527)
......|.++++++++.+++..+++...+
T Consensus 245 -----------------------~~~~~~~~~~~~~~~~~~v~l~la~~~F~ 273 (277)
T PF12679_consen 245 -----------------------FVWLSTWPSLLILLAYTLVFLALAYYRFQ 273 (277)
T ss_pred -----------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00023688999999999999988885544
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.81 E-value=5e-05 Score=76.09 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH-H-----------HhhcCeEEE
Q 009738 40 KKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-L-----------FYLFDDLLL 107 (527)
Q Consensus 40 r~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~-i-----------~~~~d~v~~ 107 (527)
|........+..+|+++++|||++ ...+.+.++.+ ++|.++|+++|++..+ + ..+|||+++
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~ 254 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVV 254 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEE
Confidence 333344455557999999999974 23344455554 4689999999985432 2 267899999
Q ss_pred EeCCeEEEEeChhh
Q 009738 108 LSNGETIYFGDAKM 121 (527)
Q Consensus 108 l~~G~~~~~G~~~~ 121 (527)
|++|+ ..|.+++
T Consensus 255 L~~~~--~~g~~~~ 266 (270)
T TIGR02858 255 LSRRK--GPGTVEA 266 (270)
T ss_pred EecCC--CCCceee
Confidence 99887 5555554
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.73 E-value=5.3e-05 Score=87.42 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=61.1
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCChhHH--------HhhcCeEEEEeCCeEEEEeCh
Q 009738 50 LTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHL--------FYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 50 ~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i--------~~~~d~v~~l~~G~~~~~G~~ 119 (527)
..+|+++++|||+.+| |+..+..+.+.++++++.|.++++++|++.+.. .+.||.+++|.+|++...|+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999999999999999985422 368999999999998766643
No 459
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.031 Score=55.85 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHhChH--HHHHH---HHHHHHHHHHHHHHhccCCCChhhhhhhhHHHHHHHHHHHHHHhhhHHH
Q 009738 223 WWKQLCILSHRSFLNMLRDMG--YYWLR---IVFYVLVSITVGILYLNVGLSNPAIYGRPKCVAFIYGFLICLSVGGLPS 297 (527)
Q Consensus 223 ~~~Q~~~L~~R~~~~~~Rd~~--~~~~r---~~~~~~~~li~G~lf~~l~~~~~~i~~r~~~l~f~~~~~~~~~~~~~~~ 297 (527)
.++..+.|.+|.++..+|+.. ++|.- +++.++++++.|.+.-.-+.+. -..--.|.+. ..+.......+...
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~-~~~l~~G~~~--w~f~~~~i~~~~~s 92 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNF-LAYLLAGLIL--WFFFSEAISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHH--HHHHHHHHHhHHHH
Confidence 356778899999998888753 23321 2444444444444443321111 0111111110 00000011122345
Q ss_pred HHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 298 FIEEHKASYRERISCHY-GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVV 376 (527)
Q Consensus 298 f~~er~v~~rE~~~g~Y-~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v 376 (527)
+.+...++.| .+ ++..+.+++++.++-..++..++....+-+.-+.. + .+.......+.+....+.++++++
T Consensus 93 ~~~n~~li~k-----~~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 93 VVANAALIKK-----INFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred hhhhHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666644 44 78899999999998766655555444444443333 2 333333333344444445667777
Q ss_pred HHhchhh-HHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHh
Q 009738 377 ALLVPNV-LMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKN 435 (527)
Q Consensus 377 ~~~~~~~-~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~n 435 (527)
+.++.-+ +.+...+ .++-+++..+|.+=+.+++|.. ++| +.++||+.+-.|.+=..
T Consensus 166 a~l~v~fRD~~~i~~-~v~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~R~~ 222 (263)
T COG1682 166 ASLGVRFRDLGQILG-VVLQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESFRAP 222 (263)
T ss_pred HhHhhhcccHHHHHH-HHHHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHHHHH
Confidence 7665332 3445544 4556677788988899999986 788 99999999999988554
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.53 E-value=0.00023 Score=70.15 Aligned_cols=85 Identities=21% Similarity=0.324 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHH----------------HHHhCCCEEEEeCCCC--
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISI----------------EILTQPTVLLLDEPTS-- 63 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~----------------~l~~~p~llllDEPts-- 63 (527)
+.++..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 45677888999988888765544332 2355666555443 335799999999 765
Q ss_pred ----CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q 009738 64 ----GLDSASAFFVIQVLKCIALD-GRIVVCSIHQP 94 (527)
Q Consensus 64 ----gLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~ 94 (527)
.+|+.....+++.|++++++ |.+++++.|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999875 88999998875
No 461
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.52 E-value=0.00026 Score=68.81 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhC-CCEEEEEecCC
Q 009738 38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIALD-GRIVVCSIHQP 94 (527)
Q Consensus 38 Ger~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~-l~~l~~~-~~tvi~~~H~~ 94 (527)
.|.++++-....+.+|+++++|||.+|+|+.....+... ++.+.+. +.++|+++|++
T Consensus 95 ~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 95 VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 567777777777789999999999999999999999888 7888776 89999999995
No 462
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.47 E-value=0.00029 Score=69.04 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHhCCCEEEEEecCChh------HHHh
Q 009738 35 ISSGEKKRLSISIEIL----TQPTVLLLDEPTSGL----DSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFY 100 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~----~~p~llllDEPtsgL----D~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~------~i~~ 100 (527)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.++.++++|.|+++++|+... .+..
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 5777655544433332 369999999999999 8888889999999998888887777664321 1345
Q ss_pred hcCeEEEEe
Q 009738 101 LFDDLLLLS 109 (527)
Q Consensus 101 ~~d~v~~l~ 109 (527)
++|-++.|+
T Consensus 176 ~~DgvI~L~ 184 (230)
T PRK08533 176 AATMLIRLE 184 (230)
T ss_pred eeeEEEEEE
Confidence 567777776
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.37 E-value=0.00084 Score=65.79 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHHHhCCCEEEEEecCChh------HHHhhcC
Q 009738 35 ISSGEKKRLSISIEILT--QPTVLLLDEPTSG---LDSASAFFVIQVLKCIALDGRIVVCSIHQPSS------HLFYLFD 103 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~--~p~llllDEPtsg---LD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~------~i~~~~d 103 (527)
.+.++++.+.....++. +|+++++||||+. .|.....++++.++.+++.|.|+++++|++.. .+..++|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 46788999999999998 9999999999965 44555556666677777788999999998642 2567778
Q ss_pred eEEEEeC
Q 009738 104 DLLLLSN 110 (527)
Q Consensus 104 ~v~~l~~ 110 (527)
.++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777763
No 464
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.27 E-value=0.00013 Score=72.32 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCCHHH--------HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCEEEEEecCChhHHHhhcC
Q 009738 33 RGISSGE--------KKRLSISIEILTQPTVLLLDEPTSGLDSASAFF-VIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (527)
Q Consensus 33 ~~lSgGe--------r~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~-i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d 103 (527)
+.+|||+ +||+++|+++..+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|+.. ....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCC
Confidence 4589999 9999999999899999999 999999655544 54 5666556789999999954 467899
Q ss_pred eEEEEeCCeE
Q 009738 104 DLLLLSNGET 113 (527)
Q Consensus 104 ~v~~l~~G~~ 113 (527)
.|.+|++|+.
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999986
No 465
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.27 E-value=0.00072 Score=65.88 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCChhHHHhhc
Q 009738 38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD-GRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 38 Ger~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~ 102 (527)
.|.+|++-...-+.+|+++|+|||.+|.|+.....+ ...++.+.+. +.++|+++|++. +.++.
T Consensus 96 ~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 96 VELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 477888777778889999999999999998887775 5677888776 889999999963 44444
No 466
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.16 E-value=0.0011 Score=59.86 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTS----------GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~ 97 (527)
-+.++.++...+.+...+|+++++||+++ +.|......+.+++....+.+.++|+++|.+...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666677888888999999999999994 5555556666666666666689999999987543
No 467
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=97.13 E-value=0.27 Score=49.24 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhh
Q 009738 367 SIVETCMMVVALL---VPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDM 437 (527)
Q Consensus 367 ~~~~~~~~~v~~~---~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef 437 (527)
..+.++|++++++ .|+.. .++ +.++.+++-.+|.+-+.+.+|.. +++ +.+.||+.+..|+.=..-+
T Consensus 160 l~~~glglils~l~v~~rDi~--~i~-~~~l~~lf~~SpI~y~~~~vp~~-~~~-il~~NPl~~~ie~~R~~~~ 228 (264)
T PRK15176 160 LLGLSFGYFCDALSERFPLVY--KAV-PVMLRPMFLISAVFYTANELPYS-LLS-IFSWNPLLHANEIVREGMF 228 (264)
T ss_pred HHHHHHHHHHHHHHHhCccHH--HHH-HHHHHHHHHHhhHhhhHHhCcHH-HHH-HHHHCcHHHHHHHHHHHHh
Confidence 3344566665554 34433 333 34556677788887788899985 676 7799999999998855443
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.10 E-value=0.0014 Score=61.19 Aligned_cols=67 Identities=22% Similarity=0.393 Sum_probs=54.8
Q ss_pred cCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 28 GNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 28 ~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
|.+-....|-||-=.--+.+. ..+-.+++||||-++|.+.-+..+...|+++++.|.-+|+.+|.|.
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 333345579998654444333 4678899999999999999999999999999999999999999984
No 469
>PF13175 AAA_15: AAA ATPase domain
Probab=97.07 E-value=0.0013 Score=69.48 Aligned_cols=65 Identities=28% Similarity=0.365 Sum_probs=54.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHh----C---CC---EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCh
Q 009738 31 HLRGISSGEKKRLSISIEILT----Q---PT---VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS 95 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~----~---p~---llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~~ 95 (527)
.....|.|.+|.+.++..+.. . +. ++++|||-+.|.|..+..+++.|++++. .+..||+|||.|.
T Consensus 338 ~l~~~g~G~~~l~~~~~~~~~~~~~~~~~~~~~~illidEPE~~LHp~~q~~~~~~L~~~~~~~~~QiiitTHSp~ 413 (415)
T PF13175_consen 338 PLSQRGSGEQNLIYISLLINFLRENKESNNNNYNILLIDEPELHLHPQAQRKFIDFLKKLSKNNNIQIIITTHSPF 413 (415)
T ss_pred ChhhcCcchHHHHHHHHHHHHHHHhhhccCcceeEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEECCChh
Confidence 346799999999888776532 2 22 9999999999999999999999999988 5789999999973
No 470
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=96.96 E-value=0.00019 Score=72.87 Aligned_cols=129 Identities=26% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh--cCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhcccc---ccCCHHHHHHHHHHHHHHHHHHHH
Q 009738 297 SFIEEHKASYRER--ISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQ---FHPGFSHYCHFCLSLFCCVSIVET 371 (527)
Q Consensus 297 ~f~~er~v~~rE~--~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~g---l~~~~~~f~~f~l~~~~~~~~~~~ 371 (527)
....||.-=.+|| ..| -+...|++++.+..+...++..++...+ +.| +..+ +++..++.+++...+..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSG-VSPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhccc-CCHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHH
Confidence 3455665544444 444 5778999999999999888887776664 333 4333 444444555566667778
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHH
Q 009738 372 CMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQF 433 (527)
Q Consensus 372 ~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~ 433 (527)
++.+++.++++...+..++..+..+.+.++|.+.+.+.+|.+ +.| +.++.|..|..+++.
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-i~~~~P~~~~~~~~~ 314 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSF-LQW-ISSFLPFYWFIQGLR 314 (344)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH-HHH-HHHHhhHHHHHHHHH
Confidence 899999999999888877777666556666666667788874 677 777889988877763
No 471
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=96.90 E-value=0.0021 Score=49.60 Aligned_cols=49 Identities=20% Similarity=0.407 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHhhCC-cCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 009738 450 PKLKGEEILLKLYGV-QLNYCKWWDLAALFCILTCYKIVLFATLKYKDKAS 499 (527)
Q Consensus 450 ~~~~G~~~L~~~~~~-~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~~~~~ 499 (527)
...-|+++|++. |+ ..++.+|..+|+|+|+.+.|.++..++|.|.++..
T Consensus 9 ~~tlG~~vL~~r-G~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 9 NSTLGVAVLKSR-GLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred CCcHHHHHHHHc-CCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 356899999985 55 43466899999999999999999999999988743
No 472
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=96.87 E-value=0.002 Score=74.90 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=49.0
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHh
Q 009738 45 ISIEILTQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFY 100 (527)
Q Consensus 45 ia~~l~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~ 100 (527)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhh
Confidence 567788999999999999999 799999999999999999999999999975 4443
No 473
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.85 E-value=0.0037 Score=62.77 Aligned_cols=62 Identities=29% Similarity=0.489 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHHh--CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 33 RGISSGEKKRLSISIEILT--QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~--~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
+.||-|..|-++++.+|.+ .|.++++|||-++|.|..-..+...+++.++++ -|++++|.++
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~r 332 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPR 332 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHH
Confidence 5899999999999999987 678999999999999999999999999988876 7888999864
No 474
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.71 E-value=0.097 Score=50.75 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhh-hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 009738 227 LCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIY-GRPKCVAFIYGFLICLSVGGLPSFIEEHKAS 305 (527)
Q Consensus 227 ~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~-~r~~~l~f~~~~~~~~~~~~~~~f~~er~v~ 305 (527)
|+.+.||.++.-+|++.....-+...+.+-.+... -++.+.+... ...|.++.+..+....+. -..|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~---al~~~~~~l~~~~~gllWi~~lfa~~l~~---------~r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSF---ALGPDPDLLARVAPGLLWIALLFASLLGL---------NRSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHh---hcCCchhHHHHHhHHHHHHHHHHHHHHHh---------hHhH
Confidence 46789999999999987655554444444333333 3343333222 223344333332222211 2347
Q ss_pred HHhhcCCCC--------ChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009738 306 YRERISCHY--------GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVA 377 (527)
Q Consensus 306 ~rE~~~g~Y--------~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~ 377 (527)
.+|+++|.. ++.+.+++|.++..-...+..++...+...+.|++. .....+.+.+.+........|.+.+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777777651 356789999999876666555555555555556554 3444445555554444455566655
Q ss_pred Hhch
Q 009738 378 LLVP 381 (527)
Q Consensus 378 ~~~~ 381 (527)
+++-
T Consensus 147 al~~ 150 (215)
T PF03379_consen 147 ALAA 150 (215)
T ss_pred HHHH
Confidence 5543
No 475
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.0015 Score=73.34 Aligned_cols=74 Identities=19% Similarity=0.340 Sum_probs=63.6
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE
Q 009738 32 LRGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~---~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
..+||||||--|++|.-++. +| +.+++||.-++||+..+..|-.+|++|+.. .-.|+||-.| ++...+|+.+=
T Consensus 1095 m~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~-aQFI~TTFRp--Ell~vAdKfyg 1171 (1200)
T KOG0964|consen 1095 MEQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDS-AQFITTTFRP--ELLSVADKFYG 1171 (1200)
T ss_pred HHHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhc-cceEeecccH--HHHHHHHhhhc
Confidence 34799999999999988775 55 689999999999999999999999999987 5678888886 68888888764
Q ss_pred E
Q 009738 108 L 108 (527)
Q Consensus 108 l 108 (527)
.
T Consensus 1172 V 1172 (1200)
T KOG0964|consen 1172 V 1172 (1200)
T ss_pred e
Confidence 3
No 476
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.014 Score=63.36 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHHh--C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEE
Q 009738 33 RGISSGEKKRLSISIEILT--Q--PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~--~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
+--||||.-|+.+|.-.+. . ...|++||--+|+-=..+..|-+.|++|.+. .-|+|+||.| .+..++|.=+.+
T Consensus 430 KvASGGELSRimLAlk~i~~~~~~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~-~QVl~VTHlP--QVAa~ad~H~~V 506 (557)
T COG0497 430 KVASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEH-HQVLCVTHLP--QVAAMADTHFLV 506 (557)
T ss_pred hhcchhHHHHHHHHHHHHHhccCCCCeEEEecccCCCChHHHHHHHHHHHHHhcC-ceEEEEecHH--HHHhhhcceEEE
Confidence 6689999999998876654 2 4489999999999999999999999999875 5699999998 478888877777
Q ss_pred eC
Q 009738 109 SN 110 (527)
Q Consensus 109 ~~ 110 (527)
++
T Consensus 507 ~K 508 (557)
T COG0497 507 EK 508 (557)
T ss_pred EE
Confidence 54
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.00066 Score=73.91 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH--------HHhhc
Q 009738 33 RGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLF 102 (527)
Q Consensus 33 ~~lSgGer~Rl~ia--~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~--------i~~~~ 102 (527)
+.+|+|++|||.|+ .++..+|+.. ...+.++.+.++.+++.|.|+|+++|++... ...++
T Consensus 114 ~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~la 183 (484)
T TIGR02655 114 YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVS 183 (484)
T ss_pred HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEee
Confidence 45899999999988 5555555433 4677889999999998999999999986421 26688
Q ss_pred CeEEEEe
Q 009738 103 DDLLLLS 109 (527)
Q Consensus 103 d~v~~l~ 109 (527)
|.|+.|+
T Consensus 184 DgVI~L~ 190 (484)
T TIGR02655 184 DNVVILR 190 (484)
T ss_pred eeEEEEE
Confidence 9999987
No 478
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.20 E-value=0.0077 Score=68.11 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=41.9
Q ss_pred cCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCCEEEEEecC
Q 009738 32 LRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~------~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~~~tvi~~~H~ 93 (527)
+..||||||+-+++|..++. +.++ ++|||++.||+..+..+++ .+.++ ..-||+.+|+
T Consensus 549 ~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~---~~QvIils~d 613 (650)
T TIGR03185 549 KERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKA---SHQVLLLSTD 613 (650)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhcc---CCeEEEEech
Confidence 45799999999766655443 2445 5699999999999999885 65553 3446666676
No 479
>PF13166 AAA_13: AAA domain
Probab=96.14 E-value=0.033 Score=63.67 Aligned_cols=89 Identities=22% Similarity=0.330 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCcccccccc------------cCcccCCCCHHHHHHHHHHHHHH--h-------CCCEEEEeCCCCC
Q 009738 6 INDIVEETIIKMGLQACAETKI------------GNWHLRGISSGEKKRLSISIEIL--T-------QPTVLLLDEPTSG 64 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~~~~~i------------~~~~~~~lSgGer~Rl~ia~~l~--~-------~p~llllDEPtsg 64 (527)
..+++.+.|+.+|..+..-... +....+.||-|||+-+++|-=|. . +..++++|.|-|.
T Consensus 460 ~~~~iN~~L~~~g~~~~~l~~~~~~~~y~l~~~~~~~~~~~LSEGEk~~iAf~yFla~l~~~~~~~~~~~iiViDDPISS 539 (712)
T PF13166_consen 460 AADRINEELKRLGFSNFSLEIVDDDKGYKLQRKGGSKPAKILSEGEKRAIAFAYFLAELKEDDEDINKKKIIVIDDPISS 539 (712)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCCeEEEEECCCCcccCccCHHHHHHHHHHHHHHHHhhcccccCcCceEEECCCCCC
Confidence 3356667788887543221111 11235789999999999885332 2 5689999999999
Q ss_pred CCHHHHHHHHHHHHHHH--hCCCEEEEEecCC
Q 009738 65 LDSASAFFVIQVLKCIA--LDGRIVVCSIHQP 94 (527)
Q Consensus 65 LD~~~~~~i~~~l~~l~--~~~~tvi~~~H~~ 94 (527)
||...+..+.+.|+++. ...+-||+.||+.
T Consensus 540 LD~~~~~~v~~~l~~~~~~~~~~QviIlTHn~ 571 (712)
T PF13166_consen 540 LDHNRRFGVASRLKEEIKNSKFRQVIILTHNL 571 (712)
T ss_pred CCHHHHHHHHHHHHHHhhcCCcceEEEEeCcH
Confidence 99999999999999996 4557788999984
No 480
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=96.05 E-value=1.8 Score=43.11 Aligned_cols=249 Identities=15% Similarity=0.170 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-cCCCCh--hhhhhhh-HHHHHHHHHHHHHHhhhHHHHHHH
Q 009738 226 QLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYL-NVGLSN--PAIYGRP-KCVAFIYGFLICLSVGGLPSFIEE 301 (527)
Q Consensus 226 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~-~l~~~~--~~i~~r~-~~l~f~~~~~~~~~~~~~~~f~~e 301 (527)
++..+.++.++...|+|..+.......+..++.....+. ...... .+..... ....+...+..+.. +-....-
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 79 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLP---LLAILLG 79 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHH---HHHHHHc
Confidence 577889999999999998777766555566666655552 111110 0000000 00000111111111 0011112
Q ss_pred HHHHHHhhcCCC--------CChhHHHHHHHHHHHHHHHHHHhhhh---hhhhccccccCC---HHHHHHHHHHHHHHHH
Q 009738 302 HKASYRERISCH--------YGEAVFVLSNFLSSFPFLVILSISSG---TILHYMVQFHPG---FSHYCHFCLSLFCCVS 367 (527)
Q Consensus 302 r~v~~rE~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~if~---~i~Y~m~gl~~~---~~~f~~f~l~~~~~~~ 367 (527)
-.++.+|+++|. .+.+--.++|.++-+-..++..++.. ...+-..|.... ..++..+....++...
T Consensus 80 ~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (278)
T COG1277 80 ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGL 159 (278)
T ss_pred cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 235567777765 34455668888887655444444433 123333444333 3344455544555555
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhhccccC------CCCCCcccccccccccCHHHHHHHHHHHhhhcCCc
Q 009738 368 IVETCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRG------VSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLE 441 (527)
Q Consensus 368 ~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~------~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~ 441 (527)
+..+.+.+++...++...+..++..+...+.+..+.... ...-| . -.. +.+.+|..+..+......... .
T Consensus 160 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~~-l~~~~~~~~~~~~~~~~~~~~-~ 235 (278)
T COG1277 160 VLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP-T-LNT-LSLLLPLYLLAELAFTILLQS-G 235 (278)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-h-hHH-HhccCHHHHHHHHhhhhcccc-c
Confidence 556778888888887766666655544444333332211 11111 0 122 566778777777654432110 0
Q ss_pred cCCCCCCCCCCcHHHHHHHhhCCcCcchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 009738 442 FDPAVPGDPKLKGEEILLKLYGVQLNYCKWWDLAALFCILTCYKIVLFATLKYK 495 (527)
Q Consensus 442 ~~~~~~~~~~~~G~~~L~~~~~~~~~~~~w~~~~iL~~~~v~f~~~~~~~L~~~ 495 (527)
... .. .. +. +.....|.+..+++++.+.+..+++...+.+
T Consensus 236 ~~~----~~----~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~ 275 (278)
T COG1277 236 FSD----SI----LT-LN-----ESLLLAWFNILILIIYILIFLSIAYLIFKRR 275 (278)
T ss_pred ccc----cc----cc-cc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 00 00 00 1012368899999999999888888665543
No 481
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=96.01 E-value=0.014 Score=67.76 Aligned_cols=47 Identities=26% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 49 ILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 49 l~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|+|.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999999999999999975
No 482
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=95.56 E-value=0.033 Score=59.67 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCCHHHHHHHH-----HHHHHHh-CCC-EEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHh--CCC
Q 009738 34 GISSGEKKRLS-----ISIEILT-QPT-VLLLD-----------------EP--TSGLDSASAFFVIQVLKCIAL--DGR 85 (527)
Q Consensus 34 ~lSgGer~Rl~-----ia~~l~~-~p~-llllD-----------------EP--tsgLD~~~~~~i~~~l~~l~~--~~~ 85 (527)
+=|-++|-|.. +|.-+.- .-+ ++++| || |+|+|+.....+.+.++++.. +|.
T Consensus 223 ~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~Gs 302 (438)
T PRK07721 223 DQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGS 302 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 45788888843 3333322 233 57889 75 679999999999999999984 575
Q ss_pred -----EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 86 -----IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 86 -----tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
||++.+|+..+ .++|++..+.+|+++..++..+
T Consensus 303 IT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 303 ITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred eeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 99999999653 7899999999999999988764
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.47 E-value=0.012 Score=60.41 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 43 LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 43 l~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
-.+..+|-.+|+++++|||.+ .+..+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+.
T Consensus 209 ~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 209 DLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 356677889999999999996 3456677776644556799999965 5667999999999988887877655
Q ss_pred H
Q 009738 123 V 123 (527)
Q Consensus 123 ~ 123 (527)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 4
No 484
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.05 E-value=0.048 Score=65.78 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=61.0
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE
Q 009738 32 LRGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~---~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
...||||||-.++||.-++. +| ++.+|||--++||..+...+.+.|++.+ .+.=.|++||++. .+..+|+++-
T Consensus 1064 l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~~--~m~~ad~l~G 1140 (1163)
T COG1196 1064 LSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRKG--TMEAADRLVG 1140 (1163)
T ss_pred hhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcChH--HHHHHHHHee
Confidence 34699999999999887765 44 7999999999999999999999999998 4456778889853 5677787664
Q ss_pred E
Q 009738 108 L 108 (527)
Q Consensus 108 l 108 (527)
.
T Consensus 1141 V 1141 (1163)
T COG1196 1141 V 1141 (1163)
T ss_pred e
Confidence 3
No 485
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=94.87 E-value=0.07 Score=61.91 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 48 EILTQPTVLLLDEPTSGLD-SASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 48 ~l~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|+|.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3557999999999999999 899999999999999999999999999753
No 486
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=94.81 E-value=0.018 Score=54.43 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChh-HHHhhcCeEEEEeCC
Q 009738 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS-HLFYLFDDLLLLSNG 111 (527)
Q Consensus 37 gGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~-~i~~~~d~v~~l~~G 111 (527)
.|+-.|..+|..+..+|+.+..+| +.+||....++.+.+++..++|.+|++.+|...+ .....||.++++..+
T Consensus 60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 488999999999999999988777 8999999999999999887667899999988632 367789999888754
No 487
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=94.79 E-value=0.096 Score=61.02 Aligned_cols=77 Identities=23% Similarity=0.166 Sum_probs=54.5
Q ss_pred cccccC--cccCCCCHHHHHHHHHHHHHHh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCh
Q 009738 24 ETKIGN--WHLRGISSGEKKRLSISIEILT--QPTVLLLDEP---TSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPS 95 (527)
Q Consensus 24 ~~~i~~--~~~~~lSgGer~Rl~ia~~l~~--~p~llllDEP---tsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~ 95 (527)
.+++|. ...+|.|.=+.....++..|-. +++++++||| |+.+|..+ .....++.+.+. +.+++++||.
T Consensus 654 ~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~-- 729 (854)
T PRK05399 654 FTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHY-- 729 (854)
T ss_pred eeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEech--
Confidence 344552 2345677766666677666554 9999999999 88888333 455677777776 5789999999
Q ss_pred hHHHhhcCe
Q 009738 96 SHLFYLFDD 104 (527)
Q Consensus 96 ~~i~~~~d~ 104 (527)
.++.+++++
T Consensus 730 ~el~~l~~~ 738 (854)
T PRK05399 730 HELTELEEK 738 (854)
T ss_pred HHHHHHhhh
Confidence 367777765
No 488
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=94.43 E-value=3.1 Score=40.17 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-ccCCCChhhhhhhh-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 009738 231 SHRSFLNMLRDMGYYWLRIVFYVLVSITVGILY-LNVGLSNPAIYGRP-KCVAFIYGFLICLSVGGLPSFIEEHKASYRE 308 (527)
Q Consensus 231 ~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf-~~l~~~~~~i~~r~-~~l~f~~~~~~~~~~~~~~~f~~er~v~~rE 308 (527)
.+|.++.-+|++.....-++. .+++-++| +.++.+.+-...-. |.++.+..+....++ ...|.+|
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF----~l~vi~lf~la~gp~~~~l~~~apgilWva~lfa~ll~l---------~rlF~~d 68 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWF----FLIVVTLFPFGVGPELKLLSRIAPGIVWVGALLSSLLSL---------DRLFRDD 68 (211)
T ss_pred cHHHHHHHHcccchHHHHHHH----HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHh---------hHHHHHH
Confidence 588899999997654443333 33333333 44455443333322 344333333222221 3467778
Q ss_pred hcCCC--------CChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009738 309 RISCH--------YGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLV 380 (527)
Q Consensus 309 ~~~g~--------Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~ 380 (527)
+++|. .+....+++|.++..-...+.-++..-..-.+.|++. .....+.+++.+-......+|.+.++++
T Consensus 69 ~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt 146 (211)
T TIGR01190 69 FEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALT 146 (211)
T ss_pred HhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88874 3567888999998865544444443333333555554 3334555566665555556666666554
No 489
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=94.43 E-value=0.064 Score=63.12 Aligned_cols=59 Identities=29% Similarity=0.336 Sum_probs=49.8
Q ss_pred CCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCCEEEEEecC
Q 009738 35 ISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-----DGRIVVCSIHQ 93 (527)
Q Consensus 35 lSgGer~------Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~~~tvi~~~H~ 93 (527)
-|-|||= |+++|-.+..+..+|=|||||+.||......+...|.++.+ .+.-.|++||+
T Consensus 1184 cSAGQKvLAsliIRLALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHD 1253 (1294)
T KOG0962|consen 1184 CSAGQKVLASLIIRLALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHD 1253 (1294)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehH
Confidence 5889984 78889999999999999999999999999988888777643 24567888898
No 490
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.37 E-value=0.068 Score=57.57 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=66.3
Q ss_pred hCCCEEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEE-EEeCCeEEEEeChhhH--H---
Q 009738 51 TQPTVLLLDEPTSGLDSA-SAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNGETIYFGDAKMA--V--- 123 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~-~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~-~l~~G~~~~~G~~~~~--~--- 123 (527)
.+|++|++|||...+|.. .+.++.+.+.++.+.|+.+|++++++..++..+.|++. -+..|-++...+|+.. .
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 379999999999988765 45678899999988888888877554566777767665 3677888887777641 1
Q ss_pred -HHHhhcCCCCCCCCCchHHHHHhhccCcc
Q 009738 124 -KFFAEAGFPCPSRRNPSDHFLRCINSDFD 152 (527)
Q Consensus 124 -~~f~~~g~~~~~~~~~~~~~~~~~~~~~~ 152 (527)
...+..+...|+ +..+++.+.+..+.+
T Consensus 273 ~~~~~~~~~~l~~--ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 273 RKMLEIEHGELPE--EVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHhcCCCCCH--HHHHHHHhccccCHH
Confidence 222333444432 345555554444433
No 491
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.042 Score=63.36 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=63.4
Q ss_pred cCCCCHHHHHHHHHHHHHHh---CC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE
Q 009738 32 LRGISSGEKKRLSISIEILT---QP-TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~---~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
+.+||||||=.-++|..++. +| ++++|||.-+.||-.+.-.|-+.|++-.+.-+-||++.- ...|++++|++=
T Consensus 1193 I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEIDAALDfkNVSIVanYIkErTkNAQFIIISLR---nnMFELa~rLvG 1269 (1293)
T KOG0996|consen 1193 ISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVANYIKERTKNAQFIIISLR---NNMFELANRLVG 1269 (1293)
T ss_pred cccCCcchhHHHHHHHHHHHHccCCCCceehhhHHHhhccccchhHHHHHHHhccCCeEEEEEeh---hhHHHHHhhhee
Confidence 35799999999999998887 45 699999999999999999999999987666566666653 468999999987
Q ss_pred Ee
Q 009738 108 LS 109 (527)
Q Consensus 108 l~ 109 (527)
++
T Consensus 1270 IY 1271 (1293)
T KOG0996|consen 1270 IY 1271 (1293)
T ss_pred eE
Confidence 75
No 492
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.058 Score=57.53 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred cCCCCHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 32 LRGISSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~-------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
..+-|.|+|+|+..+...+ .++-++++|+||++.|+. .++-..+.+....|.+..+.+|.+ .+ ++|
T Consensus 219 tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ER 291 (432)
T PRK06793 219 TSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LER 291 (432)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHH
Confidence 4578999999999988888 789999999999999996 555556666655688888888853 23 444
Q ss_pred EEEEeCCeEEEEeCh
Q 009738 105 LLLLSNGETIYFGDA 119 (527)
Q Consensus 105 v~~l~~G~~~~~G~~ 119 (527)
.-...+|.+...+..
T Consensus 292 ag~~~~GSiT~~~tv 306 (432)
T PRK06793 292 SGKTQKGSITGIYTV 306 (432)
T ss_pred hccCCCcceEEEEEE
Confidence 444578888776654
No 493
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=94.17 E-value=1.3 Score=46.86 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccC--CH--HHHHHHHHHHHHHHHHHHHHH-HHHHHhchhhHHHHHH
Q 009738 315 GEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHP--GF--SHYCHFCLSLFCCVSIVETCM-MVVALLVPNVLMGMGV 389 (527)
Q Consensus 315 ~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~--~~--~~f~~f~l~~~~~~~~~~~~~-~~v~~~~~~~~~a~~~ 389 (527)
++..+++-|+++.....++.++.|+.+. +..+.+. .+ +.|+.+|...++...+..... .+++.+.|. -+ .+
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~-~~--~~ 315 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPP-FM--PF 315 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hH--HH
Confidence 7778899999999998888999888876 4444333 33 347777766655433221111 111112111 11 11
Q ss_pred HHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHh
Q 009738 390 GTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKN 435 (527)
Q Consensus 390 ~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~n 435 (527)
.-+..++..+.+++ .|.+-.|.+ ++| .+=+ |++.+++++-.-
T Consensus 316 ~ll~wvi~nv~~~~-~P~el~p~f-yr~-gya~-P~~n~~~~~r~I 357 (382)
T PF12051_consen 316 WLLFWVILNVSSTF-YPLELSPGF-YRY-GYAM-PMHNIYEGLRVI 357 (382)
T ss_pred HHHHHHHHhccccc-CChhhCccH-HHH-hhhh-hHHHHHHHHHHh
Confidence 11122223334555 467777875 798 7666 999999999766
No 494
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.09 E-value=6.5 Score=38.60 Aligned_cols=190 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhh---hhHHHHHHHHHHHHHHhhhHHHH
Q 009738 222 SWWKQLCILSHRSFLNMLRDMGYYWLRIVFYVLVSITVGILYLNVGLSNPAIYG---RPKCVAFIYGFLICLSVGGLPSF 298 (527)
Q Consensus 222 s~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~li~G~lf~~l~~~~~~i~~---r~~~l~f~~~~~~~~~~~~~~~f 298 (527)
++++....+.+-.+....-.+.-...-.+...+-+++.+.++-.+-++.+.++. .--..+|...+..-.....-..+
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~ 82 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW 82 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666554444433334444445555555566555433332221 11122222222222111112233
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHH--------HHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHH
Q 009738 299 IEEHKASYRERISCHYGEAVFVLSNFLSSF--------PFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVE 370 (527)
Q Consensus 299 ~~er~v~~rE~~~g~Y~~~~y~la~~l~~l--------P~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~ 370 (527)
--|+.|-.-|-+-.+-+|.-|......++. |+.++..++|.. .|--.....+....+.+.+.+.+....--
T Consensus 83 ef~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~-l~~~~~~~l~~~~l~~~~l~la~~~~~~F 161 (268)
T COG4587 83 EFEKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFAL-LYGAILQFLSPWTLYLFVLALALLFLLRF 161 (268)
T ss_pred HHHHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HhhHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555566666655555554 444444444422 22212223344444444333333221111
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 009738 371 TCMMVVALLVPNVLMGMGVGTALIVLMMMVSPVFRGVSDLPK 412 (527)
Q Consensus 371 ~~~~~v~~~~~~~~~a~~~~~~~~~~~~lf~Gf~i~~~~ip~ 412 (527)
.+-..+++.+=-.+-|+.+.-...++....||.+.|..-.|.
T Consensus 162 ~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~ 203 (268)
T COG4587 162 LIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD 203 (268)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH
Confidence 122223333222345677777777888899999999999997
No 495
>COG1511 Predicted membrane protein [Function unknown]
Probab=93.76 E-value=1.9 Score=49.95 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=95.3
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q 009738 309 RISCHYGEAVFVLSNFLSSFPFLVILSISSGTILHYMVQFHPGFSHYCHFCLSLFCCVSIVETCMMVVALLVPNVLMGMG 388 (527)
Q Consensus 309 ~~~g~Y~~~~y~la~~l~~lP~~~~~~~if~~i~Y~m~gl~~~~~~f~~f~l~~~~~~~~~~~~~~~v~~~~~~~~~a~~ 388 (527)
...+.|....|++++.++.+-.......+-...-+++.|....-.. .+.+..+++....+..++.+++.+ - ..+-.
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~~~~-~~~~~~i~~s~~f~~ii~~lv~~~-g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVKSPL-LLVLFAIFSSVAFMIIIYLLVSLF-G--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccCchh-HHHHHHHHHHHHHHHHHHHHHHHh-C--cchHH
Confidence 6788888999999999999988888887777778888887765332 222222332222222233333333 2 34555
Q ss_pred HHHHHHHHHHHhhccccCCCCCCcccccccccccCHHHHHHHHHHHhhhcCCccCCCCCCCCCCcHHHHHHHhhCCcCcc
Q 009738 389 VGTALIVLMMMVSPVFRGVSDLPKFFWQYPMSYITFAAWAIEGQFKNDMIGLEFDPAVPGDPKLKGEEILLKLYGVQLNY 468 (527)
Q Consensus 389 ~~~~~~~~~~lf~Gf~i~~~~ip~~~w~w~~~yiSp~~Y~~~~l~~nef~g~~~~~~~~~~~~~~G~~~L~~~~~~~~~~ 468 (527)
++.+++++....+|-.-+....|.+ +++ ++..-|+.|++.++ +|+.+. .+ ..
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~~-~~~-l~~~lp~ty~v~~~--r~~~~~----------------------~~--~~ 737 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPSF-FQI-LHPALPLTYAVNGF--REVIGG----------------------PI--PS 737 (780)
T ss_pred HHHHHHHHHHhccccccchhccHHH-HHH-HHHhccHHHHHHHh--HHhhcc----------------------Cc--hH
Confidence 5556666666666666677888875 687 88888999995554 222111 01 11
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHHHh
Q 009738 469 CKWWDLAALFCILTCYKI-VLFATLKY 494 (527)
Q Consensus 469 ~~w~~~~iL~~~~v~f~~-~~~~~L~~ 494 (527)
..|.+.+++.++.+.|.+ ..++.+..
T Consensus 738 ~~~~~~~~~~~~~i~~~~~~~~~~~~~ 764 (780)
T COG1511 738 NLWSGLLALIGFLILFIIGGLFLKLPL 764 (780)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777788887777665 34444333
No 496
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.52 E-value=0.089 Score=50.21 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 44 ~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.+.++|..+|+++++|||. |..+.. ...+.+..|..++.|+|.++ .....||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~----~~l~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIR----LALTAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHH----HHHHHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 5778899999999999996 555433 33345667899999999974 346678887664
No 497
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=93.27 E-value=0.26 Score=51.26 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcC-
Q 009738 34 GISSGEKKRLSISIEILT---------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD- 103 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d- 103 (527)
-.|-||+|-+.+|.-|+. ++.||||||-+|-||..-+..+++. .+ .+.-+++|+.+. +.+.+..+
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~---~~~Q~fvT~t~~-~~~~~~~~~ 349 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IE---LGVQVFVTTTDL-EDIDDNLDE 349 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-cc---cCCeEEEEccCH-HHhhhhhhc
Confidence 489999999998876664 7899999999999999999998887 22 333344444442 34443444
Q ss_pred --eEEEEeCCeE
Q 009738 104 --DLLLLSNGET 113 (527)
Q Consensus 104 --~v~~l~~G~~ 113 (527)
++....+|++
T Consensus 350 ~~~~f~V~~g~i 361 (363)
T COG1195 350 NAQMFHVEDGKI 361 (363)
T ss_pred cceEEEEeccee
Confidence 6777778876
No 498
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.14 E-value=0.084 Score=54.51 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=47.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC--hhhHHHHHhhcC
Q 009738 56 LLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD--AKMAVKFFAEAG 130 (527)
Q Consensus 56 lllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~--~~~~~~~f~~~g 130 (527)
+++|||+.+||+..+..+.+.|++.. ++.++|+++|++..-...+-.|+..+. ..+ .+++.++..+.|
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~~------~~~~~~~~~~~~L~~~~ 185 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKMV------LPAPSHEEALAYLRERG 185 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhhc------CCCCCHHHHHHHHHhcC
Confidence 56789999999999999999999975 568899999998643333334443332 222 344556666544
No 499
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.68 E-value=0.07 Score=60.66 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHHHh---C-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 33 RGISSGEKKRLSISIEILT---Q-PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~---~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..||||||-.|++...|+. . ++++||||--+.||-.....|-.+|+.-=...+-||++.-+
T Consensus 1081 ~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLKe 1145 (1174)
T KOG0933|consen 1081 SELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLKE 1145 (1174)
T ss_pred HHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEchh
Confidence 5799999999888766654 4 47999999999999999999999998744445566666554
No 500
>COG4694 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.59 E-value=0.35 Score=52.06 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHHh---CC-----CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhh
Q 009738 34 GISSGEKKRLSISIEILT---QP-----TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~---~p-----~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~ 101 (527)
.||-|||+-++++--|+. +| +++++|.|.+.+|+.-....+..++....+++-|++-+|+ ...+-++
T Consensus 529 ~LSEGekt~iaf~yflakL~enpd~~k~kvvViDDPisSfDsn~lf~~~~~v~~~~t~~kQviVLtHn-tYF~rd~ 603 (758)
T COG4694 529 TLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTNIKQVIVLTHN-TYFYRDI 603 (758)
T ss_pred cccccchhHHHHHHHHHHHHhCcccccCeeEEecCCccccchhHHHHHHHHHHHHHhCceEEEEEecc-ceehHHH
Confidence 499999999887765554 55 5789999999999999999999999999999999999999 4443333
Done!