Query 009738
Match_columns 527
No_of_seqs 285 out of 3118
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.9 2.9E-25 9.9E-30 221.4 15.6 116 2-123 116-232 (275)
2 3tui_C Methionine import ATP-b 99.9 6.1E-25 2.1E-29 226.1 15.6 116 2-123 136-252 (366)
3 2olj_A Amino acid ABC transpor 99.9 2E-24 6.7E-29 214.1 17.3 115 3-123 133-247 (263)
4 1b0u_A Histidine permease; ABC 99.9 1.8E-24 6.3E-29 214.4 16.5 115 3-123 126-241 (262)
5 1g6h_A High-affinity branched- 99.9 1.8E-24 6.2E-29 214.0 15.6 112 4-121 128-239 (257)
6 3rlf_A Maltose/maltodextrin im 99.9 3.6E-24 1.2E-28 221.7 17.1 116 2-123 106-222 (381)
7 3fvq_A Fe(3+) IONS import ATP- 99.9 3.1E-24 1.1E-28 220.7 16.2 115 3-123 112-227 (359)
8 1vpl_A ABC transporter, ATP-bi 99.9 4.8E-24 1.6E-28 210.6 16.7 115 4-124 121-235 (256)
9 3tif_A Uncharacterized ABC tra 99.9 4.4E-24 1.5E-28 208.4 15.1 113 3-122 118-232 (235)
10 2pcj_A ABC transporter, lipopr 99.9 5.6E-24 1.9E-28 206.2 15.4 109 4-119 115-223 (224)
11 4g1u_C Hemin import ATP-bindin 99.9 4.4E-24 1.5E-28 212.1 14.8 114 4-123 116-236 (266)
12 1z47_A CYSA, putative ABC-tran 99.9 7.3E-24 2.5E-28 218.0 16.8 116 2-123 118-234 (355)
13 2onk_A Molybdate/tungstate ABC 99.9 5.2E-24 1.8E-28 208.4 14.8 111 7-123 104-215 (240)
14 1oxx_K GLCV, glucose, ABC tran 99.9 9E-24 3.1E-28 217.7 16.0 116 2-123 113-229 (353)
15 1g29_1 MALK, maltose transport 99.9 1.4E-23 4.9E-28 217.6 16.9 116 2-123 112-228 (372)
16 2it1_A 362AA long hypothetical 99.9 9.6E-24 3.3E-28 217.8 15.5 116 2-123 106-222 (362)
17 1ji0_A ABC transporter; ATP bi 99.9 7.4E-24 2.5E-28 207.4 13.8 114 4-123 113-227 (240)
18 2yyz_A Sugar ABC transporter, 99.9 1E-23 3.4E-28 217.4 15.1 114 4-123 108-222 (359)
19 2yz2_A Putative ABC transporte 99.9 8.9E-24 3.1E-28 210.0 13.7 114 5-124 112-227 (266)
20 1v43_A Sugar-binding transport 99.9 1.4E-23 4.9E-28 217.2 15.7 116 2-123 114-230 (372)
21 2nq2_C Hypothetical ABC transp 99.9 2.2E-23 7.5E-28 205.6 15.8 111 5-122 104-215 (253)
22 2ihy_A ABC transporter, ATP-bi 99.9 9.7E-24 3.3E-28 211.0 13.3 112 5-122 137-250 (279)
23 2zu0_C Probable ATP-dependent 99.9 2.7E-23 9.1E-28 206.6 14.9 115 4-123 137-253 (267)
24 2d2e_A SUFC protein; ABC-ATPas 99.9 3.3E-23 1.1E-27 204.1 14.8 111 5-121 117-230 (250)
25 2qi9_C Vitamin B12 import ATP- 99.9 5.3E-23 1.8E-27 202.3 15.0 110 7-122 104-220 (249)
26 3d31_A Sulfate/molybdate ABC t 99.9 4E-23 1.4E-27 212.2 14.0 110 8-123 106-216 (348)
27 2ff7_A Alpha-hemolysin translo 99.9 5.3E-22 1.8E-26 195.1 14.3 113 8-123 113-231 (247)
28 2pjz_A Hypothetical protein ST 99.9 4.8E-22 1.6E-26 197.0 13.7 108 7-123 105-214 (263)
29 2ixe_A Antigen peptide transpo 99.9 6.5E-22 2.2E-26 197.0 13.5 107 10-123 135-244 (271)
30 1mv5_A LMRA, multidrug resista 99.9 5.7E-22 1.9E-26 194.4 11.4 114 7-123 106-225 (243)
31 3nh6_A ATP-binding cassette SU 99.9 3.1E-21 1.1E-25 194.8 16.0 113 8-124 158-277 (306)
32 2ghi_A Transport protein; mult 99.9 2.8E-21 9.7E-26 191.3 14.5 112 8-123 123-241 (260)
33 3gd7_A Fusion complex of cysti 99.8 3.7E-21 1.3E-25 200.4 10.4 115 7-124 122-242 (390)
34 2pze_A Cystic fibrosis transme 99.8 1.8E-20 6.2E-25 182.1 12.3 110 10-123 100-217 (229)
35 2cbz_A Multidrug resistance-as 99.8 2.1E-20 7E-25 182.6 12.4 91 30-123 123-216 (237)
36 2yl4_A ATP-binding cassette SU 99.8 4.8E-20 1.6E-24 203.2 15.7 113 7-123 450-569 (595)
37 3j16_B RLI1P; ribosome recycli 99.8 2.3E-20 8E-25 204.8 12.4 111 8-124 446-559 (608)
38 3b60_A Lipid A export ATP-bind 99.8 5.1E-20 1.7E-24 202.5 15.0 114 7-124 447-567 (582)
39 3b5x_A Lipid A export ATP-bind 99.8 4.6E-20 1.6E-24 202.8 14.2 113 7-123 447-566 (582)
40 1sgw_A Putative ABC transporte 99.8 9E-21 3.1E-25 182.1 5.3 99 7-113 112-210 (214)
41 1yqt_A RNAse L inhibitor; ATP- 99.8 7.1E-20 2.4E-24 199.0 12.9 111 8-124 380-493 (538)
42 3bk7_A ABC transporter ATP-bin 99.8 1.1E-19 3.8E-24 199.7 14.3 112 7-124 449-563 (607)
43 3qf4_A ABC transporter, ATP-bi 99.8 1.9E-19 6.6E-24 197.9 16.2 113 8-124 447-566 (587)
44 4a82_A Cystic fibrosis transme 99.8 1.9E-19 6.6E-24 197.7 15.4 113 8-124 445-564 (578)
45 2bbs_A Cystic fibrosis transme 99.8 1.6E-19 5.6E-24 181.2 12.2 110 10-123 129-246 (290)
46 3ozx_A RNAse L inhibitor; ATP 99.8 2.1E-19 7.1E-24 195.1 13.0 110 8-123 364-476 (538)
47 3qf4_B Uncharacterized ABC tra 99.8 2E-19 6.9E-24 198.2 12.2 113 8-124 459-578 (598)
48 3ux8_A Excinuclease ABC, A sub 99.8 6.3E-19 2.2E-23 196.9 15.8 109 8-123 521-639 (670)
49 3bk7_A ABC transporter ATP-bin 99.8 4.5E-19 1.5E-23 194.9 13.1 99 8-112 207-305 (607)
50 3ux8_A Excinuclease ABC, A sub 99.8 5.9E-19 2E-23 197.1 14.3 104 13-123 185-297 (670)
51 1yqt_A RNAse L inhibitor; ATP- 99.8 3.4E-19 1.2E-23 193.7 12.0 99 8-112 137-235 (538)
52 3j16_B RLI1P; ribosome recycli 99.8 4.4E-19 1.5E-23 194.8 12.4 103 8-116 200-302 (608)
53 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1.1E-18 3.8E-23 157.7 12.3 82 29-112 52-141 (148)
54 2iw3_A Elongation factor 3A; a 99.8 1.7E-18 5.8E-23 197.2 15.3 108 7-123 525-634 (986)
55 3ozx_A RNAse L inhibitor; ATP 99.8 3.7E-19 1.3E-23 193.1 9.1 101 8-115 117-217 (538)
56 3pih_A Uvrabc system protein A 99.8 1.5E-18 5.3E-23 197.3 14.5 110 8-123 783-901 (916)
57 2vf7_A UVRA2, excinuclease ABC 99.8 3.1E-18 1.1E-22 193.3 13.4 110 7-123 707-826 (842)
58 2r6f_A Excinuclease ABC subuni 99.7 5.2E-18 1.8E-22 191.9 14.5 109 8-123 823-941 (972)
59 3pih_A Uvrabc system protein A 99.7 4.2E-18 1.5E-22 193.6 13.8 108 9-123 443-559 (916)
60 2r6f_A Excinuclease ABC subuni 99.7 4.6E-18 1.6E-22 192.3 13.5 112 4-123 479-599 (972)
61 2ygr_A Uvrabc system protein A 99.7 8.6E-18 2.9E-22 190.7 14.8 110 8-124 841-960 (993)
62 2ygr_A Uvrabc system protein A 99.7 8.6E-18 2.9E-22 190.8 14.3 113 4-124 496-617 (993)
63 4f4c_A Multidrug resistance pr 99.7 6.2E-18 2.1E-22 201.2 11.9 114 7-124 1184-1304(1321)
64 2vf7_A UVRA2, excinuclease ABC 99.7 1.7E-17 5.7E-22 187.3 14.0 112 4-123 354-474 (842)
65 4f4c_A Multidrug resistance pr 99.7 1.1E-17 3.9E-22 199.0 13.0 114 7-124 521-641 (1321)
66 3g5u_A MCG1178, multidrug resi 99.7 1.6E-17 5.4E-22 197.2 14.0 112 9-124 1140-1258(1284)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 1.5E-17 5.2E-22 172.4 10.7 84 30-115 275-364 (365)
68 3g5u_A MCG1178, multidrug resi 99.7 3.2E-17 1.1E-21 194.6 13.7 99 22-124 515-613 (1284)
69 2iw3_A Elongation factor 3A; a 99.7 9.5E-18 3.3E-22 191.1 8.7 103 7-118 877-981 (986)
70 4aby_A DNA repair protein RECN 99.6 6.6E-16 2.3E-20 162.4 14.0 80 35-117 296-381 (415)
71 3kta_B Chromosome segregation 99.5 1.5E-14 5.1E-19 134.0 10.5 78 32-112 62-145 (173)
72 1e69_A Chromosome segregation 99.5 1.9E-14 6.4E-19 146.6 11.2 81 31-114 216-302 (322)
73 3qkt_A DNA double-strand break 99.5 1.3E-14 4.3E-19 149.0 9.3 77 31-109 245-327 (339)
74 4ad8_A DNA repair protein RECN 99.5 1.3E-14 4.6E-19 157.1 9.8 78 31-111 393-473 (517)
75 2o5v_A DNA replication and rep 99.5 1.1E-14 3.9E-19 150.0 8.0 86 29-122 259-354 (359)
76 3auy_A DNA double-strand break 99.4 4.7E-13 1.6E-17 139.0 12.3 101 6-109 241-359 (371)
77 2npi_A Protein CLP1; CLP1-PCF1 99.4 6.3E-15 2.2E-19 156.8 -2.9 101 10-122 218-336 (460)
78 1ye8_A Protein THEP1, hypothet 99.4 3E-13 1E-17 125.9 6.7 78 31-115 73-159 (178)
79 4gp7_A Metallophosphoesterase; 99.3 2.6E-13 8.9E-18 125.3 3.4 65 34-99 83-163 (171)
80 1w1w_A Structural maintenance 99.3 3.3E-12 1.1E-16 135.1 10.5 75 33-109 332-410 (430)
81 3b85_A Phosphate starvation-in 99.1 1.9E-12 6.6E-17 123.5 -2.7 52 38-95 108-159 (208)
82 1tf7_A KAIC; homohexamer, hexa 99.1 3.4E-11 1.2E-15 130.5 5.8 81 31-112 350-444 (525)
83 1tq4_A IIGP1, interferon-induc 98.9 4.9E-11 1.7E-15 124.9 -1.6 97 8-111 135-254 (413)
84 3thx_A DNA mismatch repair pro 98.9 9E-10 3.1E-14 126.0 7.5 91 31-123 718-812 (934)
85 1cr0_A DNA primase/helicase; R 98.9 3.1E-09 1.1E-13 106.3 9.3 80 33-113 128-237 (296)
86 2o8b_B DNA mismatch repair pro 98.6 3.3E-08 1.1E-12 114.4 8.1 83 34-119 851-937 (1022)
87 1znw_A Guanylate kinase, GMP k 98.6 3.8E-10 1.3E-14 107.1 -7.2 89 4-109 103-202 (207)
88 2pt7_A CAG-ALFA; ATPase, prote 98.6 5E-09 1.7E-13 106.8 0.6 67 37-112 225-291 (330)
89 3thx_B DNA mismatch repair pro 98.6 3.1E-08 1.1E-12 113.0 6.8 71 32-105 733-805 (918)
90 2w0m_A SSO2452; RECA, SSPF, un 98.6 8.8E-08 3E-12 91.2 7.7 78 34-111 103-192 (235)
91 2v9p_A Replication protein E1; 98.5 8.5E-10 2.9E-14 110.9 -8.5 72 33-128 199-270 (305)
92 1nlf_A Regulatory protein REPA 98.5 1.3E-07 4.4E-12 93.7 7.3 78 10-95 99-182 (279)
93 2ehv_A Hypothetical protein PH 98.4 1.5E-07 5.2E-12 90.8 5.4 73 36-109 119-206 (251)
94 2cvh_A DNA repair and recombin 98.4 9.5E-07 3.3E-11 83.4 9.2 78 34-111 84-185 (220)
95 1tf7_A KAIC; homohexamer, hexa 98.3 1.1E-07 3.9E-12 102.8 1.2 72 41-112 126-211 (525)
96 3b9q_A Chloroplast SRP recepto 98.3 1.5E-07 5.2E-12 94.6 1.5 72 32-113 202-284 (302)
97 1ewq_A DNA mismatch repair pro 98.2 1E-06 3.5E-11 99.0 5.0 66 32-102 633-704 (765)
98 3sop_A Neuronal-specific septi 98.1 2E-07 6.7E-12 92.2 -1.0 53 33-93 97-149 (270)
99 4a74_A DNA repair and recombin 98.1 1.9E-06 6.5E-11 81.9 5.3 103 8-112 74-201 (231)
100 1wb9_A DNA mismatch repair pro 98.1 1.3E-06 4.3E-11 98.8 4.3 83 34-119 669-753 (800)
101 2obl_A ESCN; ATPase, hydrolase 98.1 8.7E-08 3E-12 98.2 -4.9 78 32-122 169-253 (347)
102 2og2_A Putative signal recogni 98.1 1.4E-06 4.8E-11 89.4 3.8 72 32-113 259-341 (359)
103 3aez_A Pantothenate kinase; tr 98.0 2.6E-08 9E-13 100.6 -10.5 55 7-67 155-209 (312)
104 1pzn_A RAD51, DNA repair and r 98.0 2.3E-06 7.9E-11 87.7 3.7 82 36-118 208-309 (349)
105 2dpy_A FLII, flagellum-specifi 98.0 2.5E-07 8.4E-12 97.8 -4.3 78 32-122 256-342 (438)
106 1pui_A ENGB, probable GTP-bind 97.9 9.8E-06 3.3E-10 75.8 5.8 73 9-86 128-202 (210)
107 2eyu_A Twitching motility prot 97.9 5.9E-06 2E-10 81.1 4.1 61 41-110 87-147 (261)
108 1z6g_A Guanylate kinase; struc 97.9 6.8E-08 2.3E-12 92.3 -9.6 50 34-83 122-176 (218)
109 3asz_A Uridine kinase; cytidin 97.8 7.1E-08 2.4E-12 91.1 -11.9 83 7-94 67-161 (211)
110 3ec2_A DNA replication protein 97.7 1.7E-05 5.8E-10 72.7 3.9 51 47-97 95-146 (180)
111 2i3b_A HCR-ntpase, human cance 97.7 9.9E-07 3.4E-11 82.4 -4.6 78 33-117 82-169 (189)
112 3jvv_A Twitching mobility prot 97.6 1.7E-05 5.7E-10 81.4 2.3 59 44-111 188-246 (356)
113 2qnr_A Septin-2, protein NEDD5 97.4 8.2E-06 2.8E-10 81.8 -3.8 57 31-95 110-168 (301)
114 1n0w_A DNA repair protein RAD5 97.3 0.00036 1.2E-08 66.5 7.8 79 34-112 98-210 (243)
115 2kjq_A DNAA-related protein; s 97.1 0.00018 6.3E-09 64.1 2.9 50 48-98 79-129 (149)
116 2bdt_A BH3686; alpha-beta prot 97.1 2E-06 7E-11 79.6 -10.5 79 36-121 96-181 (189)
117 2jeo_A Uridine-cytidine kinase 97.1 3.4E-05 1.2E-09 74.7 -2.6 73 33-124 115-187 (245)
118 2r6a_A DNAB helicase, replicat 97.0 0.0027 9.1E-08 67.1 10.5 79 33-113 294-401 (454)
119 3lda_A DNA repair protein RAD5 96.9 0.0019 6.3E-08 67.2 8.2 73 40-112 259-364 (400)
120 1sxj_E Activator 1 40 kDa subu 96.8 0.00097 3.3E-08 67.5 5.4 55 49-105 131-185 (354)
121 3szr_A Interferon-induced GTP- 96.4 0.0018 6.2E-08 71.0 4.2 77 50-126 144-239 (608)
122 1lw7_A Transcriptional regulat 96.3 0.00031 1E-08 72.1 -2.7 73 34-108 258-341 (365)
123 2qag_C Septin-7; cell cycle, c 96.1 0.00068 2.3E-08 70.9 -0.8 54 35-93 119-176 (418)
124 2ewv_A Twitching motility prot 96.1 0.002 6.9E-08 66.3 2.6 59 42-109 199-257 (372)
125 1rj9_A FTSY, signal recognitio 96.1 0.0014 4.8E-08 65.5 1.4 56 35-95 203-259 (304)
126 2dr3_A UPF0273 protein PH0284; 96.0 0.016 5.5E-07 54.8 8.0 60 51-110 127-196 (247)
127 2f1r_A Molybdopterin-guanine d 95.8 0.00039 1.3E-08 63.6 -4.1 70 9-85 84-164 (171)
128 1udx_A The GTP-binding protein 95.7 0.0024 8.3E-08 66.6 0.8 69 32-105 250-319 (416)
129 1nij_A Hypothetical protein YJ 95.6 0.0014 4.7E-08 66.0 -1.3 57 34-103 141-197 (318)
130 2zr9_A Protein RECA, recombina 95.6 0.03 1E-06 56.9 8.6 78 41-118 126-237 (349)
131 1odf_A YGR205W, hypothetical 3 95.6 0.00068 2.3E-08 67.4 -3.6 36 32-69 132-169 (290)
132 2bbw_A Adenylate kinase 4, AK4 95.5 0.00085 2.9E-08 64.6 -3.2 46 32-84 150-200 (246)
133 2xau_A PRE-mRNA-splicing facto 94.4 0.016 5.5E-07 65.3 2.8 76 32-108 188-265 (773)
134 2ius_A DNA translocase FTSK; n 94.2 0.0041 1.4E-07 66.5 -2.4 88 4-95 241-343 (512)
135 2ce7_A Cell division protein F 94.1 0.073 2.5E-06 56.4 7.2 59 37-95 93-165 (476)
136 4a1f_A DNAB helicase, replicat 93.8 0.085 2.9E-06 53.3 6.5 78 1-91 84-163 (338)
137 3bh0_A DNAB-like replicative h 92.9 0.37 1.3E-05 47.9 9.6 28 35-62 134-161 (315)
138 1s96_A Guanylate kinase, GMP k 92.9 0.12 4E-06 48.8 5.6 62 46-126 101-162 (219)
139 1ni3_A YCHF GTPase, YCHF GTP-b 92.6 0.00043 1.5E-08 71.7 -12.9 66 52-120 139-209 (392)
140 1zp6_A Hypothetical protein AT 92.4 0.017 5.7E-07 52.7 -1.0 52 32-91 107-158 (191)
141 1vma_A Cell division protein F 91.6 0.2 6.9E-06 49.8 5.7 59 10-81 151-212 (306)
142 2z4s_A Chromosomal replication 91.4 0.033 1.1E-06 58.4 -0.3 69 52-120 194-264 (440)
143 1ls1_A Signal recognition part 90.1 0.52 1.8E-05 46.4 7.1 45 36-80 164-209 (295)
144 1g5t_A COB(I)alamin adenosyltr 89.9 0.24 8.4E-06 45.9 4.1 71 40-111 106-180 (196)
145 3euj_A Chromosome partition pr 89.5 0.52 1.8E-05 49.8 6.9 71 32-109 377-464 (483)
146 1lw7_A Transcriptional regulat 89.3 0.22 7.5E-06 50.6 3.7 29 34-62 296-329 (365)
147 2px0_A Flagellar biosynthesis 88.5 0.22 7.4E-06 49.3 3.0 69 42-115 174-246 (296)
148 2gza_A Type IV secretion syste 88.2 0.11 3.8E-06 52.9 0.6 68 36-112 236-303 (361)
149 2e87_A Hypothetical protein PH 87.9 0.56 1.9E-05 47.4 5.7 60 33-94 230-292 (357)
150 1oix_A RAS-related protein RAB 83.8 0.31 1.1E-05 44.2 1.1 43 35-79 146-188 (191)
151 2qag_B Septin-6, protein NEDD5 83.3 1.1 3.6E-05 46.7 5.0 57 34-93 161-218 (427)
152 2rcn_A Probable GTPase ENGC; Y 83.0 0.53 1.8E-05 47.8 2.6 42 2-49 287-328 (358)
153 1lvg_A Guanylate kinase, GMP k 83.0 0.026 8.9E-07 52.3 -6.7 56 46-110 117-173 (198)
154 3b9p_A CG5977-PA, isoform A; A 81.9 3.1 0.0001 40.2 7.6 73 36-108 97-186 (297)
155 2b8t_A Thymidine kinase; deoxy 77.0 4.9 0.00017 37.7 7.0 53 52-109 89-150 (223)
156 2q6t_A DNAB replication FORK h 77.0 11 0.00037 39.0 10.4 74 35-110 293-397 (444)
157 2w58_A DNAI, primosome compone 71.1 2.9 0.0001 37.8 3.7 53 49-101 112-166 (202)
158 1fnn_A CDC6P, cell division co 71.0 5.8 0.0002 39.5 6.3 44 51-95 124-170 (389)
159 2eyu_A Twitching motility prot 71.0 0.0078 2.7E-07 58.7 -14.6 69 22-93 161-239 (261)
160 2z43_A DNA repair and recombin 70.6 4.7 0.00016 39.8 5.4 54 40-93 188-257 (324)
161 3c8u_A Fructokinase; YP_612366 70.3 0.051 1.7E-06 50.5 -8.7 72 34-126 111-183 (208)
162 1l8q_A Chromosomal replication 69.9 3 0.0001 40.9 3.8 47 50-96 96-143 (324)
163 2r8r_A Sensor protein; KDPD, P 68.8 3.7 0.00012 38.8 3.9 48 45-92 77-125 (228)
164 2f9l_A RAB11B, member RAS onco 68.1 3.2 0.00011 37.4 3.3 38 42-81 129-166 (199)
165 2qtf_A Protein HFLX, GTP-bindi 66.8 3.6 0.00012 41.7 3.6 70 8-82 279-353 (364)
166 1v5w_A DMC1, meiotic recombina 65.7 7.6 0.00026 38.7 5.8 53 41-93 204-273 (343)
167 1u94_A RECA protein, recombina 65.7 24 0.00082 35.4 9.5 77 41-117 128-238 (356)
168 1in4_A RUVB, holliday junction 65.1 0.44 1.5E-05 47.7 -3.6 51 32-104 160-211 (334)
169 3bgw_A DNAB-like replicative h 64.8 21 0.00071 37.0 9.1 59 52-110 308-394 (444)
170 2orv_A Thymidine kinase; TP4A 64.1 12 0.0004 35.4 6.4 55 49-109 87-150 (234)
171 2qm8_A GTPase/ATPase; G protei 64.1 2.7 9.2E-05 42.1 2.1 46 33-82 209-260 (337)
172 2oap_1 GSPE-2, type II secreti 63.8 0.011 3.9E-07 63.2 -16.4 57 33-102 399-457 (511)
173 2ewv_A Twitching motility prot 61.8 0.016 5.3E-07 59.6 -15.3 59 35-95 284-352 (372)
174 3k1j_A LON protease, ATP-depen 60.7 2 6.7E-05 46.7 0.4 46 33-79 182-227 (604)
175 3e70_C DPA, signal recognition 56.8 17 0.0006 36.0 6.5 45 43-94 234-279 (328)
176 3hr8_A Protein RECA; alpha and 56.1 65 0.0022 32.2 10.7 77 41-117 126-236 (356)
177 2qgz_A Helicase loader, putati 55.7 8.4 0.00029 37.8 4.0 53 49-101 211-265 (308)
178 2j9r_A Thymidine kinase; TK1, 54.6 12 0.0004 34.9 4.5 53 52-109 101-162 (214)
179 1xx6_A Thymidine kinase; NESG, 54.3 22 0.00074 32.3 6.3 53 52-109 81-142 (191)
180 1b9m_A Protein (mode); DNA-bin 53.8 6.9 0.00024 37.2 2.9 47 2-54 47-93 (265)
181 4ag6_A VIRB4 ATPase, type IV s 48.4 20 0.00069 36.0 5.6 45 52-96 262-309 (392)
182 3llm_A ATP-dependent RNA helic 48.4 19 0.00065 33.3 5.0 67 36-104 162-229 (235)
183 1jjv_A Dephospho-COA kinase; P 46.3 2.8 9.7E-05 38.1 -1.2 70 36-109 61-131 (206)
184 3bos_A Putative DNA replicatio 44.0 15 0.0005 33.5 3.4 45 51-95 103-149 (242)
185 3d8b_A Fidgetin-like protein 1 43.7 47 0.0016 32.9 7.4 53 42-94 166-231 (357)
186 2x8a_A Nuclear valosin-contain 41.8 0.55 1.9E-05 45.7 -7.2 30 32-63 135-164 (274)
187 2qby_A CDC6 homolog 1, cell di 41.8 6.9 0.00024 38.7 0.8 44 52-95 128-174 (386)
188 1p9r_A General secretion pathw 40.9 0.87 3E-05 47.2 -6.2 36 13-57 279-314 (418)
189 1njg_A DNA polymerase III subu 40.4 14 0.0005 33.2 2.7 42 52-95 126-167 (250)
190 1m3s_A Hypothetical protein YC 39.6 41 0.0014 29.6 5.6 42 71-112 93-134 (186)
191 3szr_A Interferon-induced GTP- 37.8 15 0.00052 39.7 2.7 59 33-92 163-223 (608)
192 1tk9_A Phosphoheptose isomeras 37.4 41 0.0014 29.6 5.3 41 71-111 124-164 (188)
193 2xhz_A KDSD, YRBH, arabinose 5 35.6 44 0.0015 29.3 5.1 42 70-111 109-150 (183)
194 3sho_A Transcriptional regulat 35.5 47 0.0016 29.2 5.3 41 71-111 101-141 (187)
195 1jcn_A Inosine monophosphate d 34.5 0.42 1.4E-05 51.0 -10.2 73 47-126 28-104 (514)
196 3cf0_A Transitional endoplasmi 34.3 43 0.0015 32.3 5.2 51 44-94 100-164 (301)
197 2i1q_A DNA repair and recombin 34.0 34 0.0012 33.3 4.5 70 42-111 191-291 (322)
198 1xp8_A RECA protein, recombina 33.6 1.4E+02 0.0049 29.8 9.1 72 41-112 139-244 (366)
199 2xbl_A Phosphoheptose isomeras 33.5 48 0.0017 29.4 5.1 41 71-111 130-170 (198)
200 1q57_A DNA primase/helicase; d 33.2 1.4E+02 0.0048 30.9 9.4 68 42-110 342-441 (503)
201 3h4m_A Proteasome-activating n 32.9 39 0.0013 31.8 4.6 51 44-94 102-166 (285)
202 4dgh_A Sulfate permease family 32.5 92 0.0031 25.6 6.4 44 50-93 46-90 (130)
203 1vim_A Hypothetical protein AF 31.6 57 0.002 29.3 5.3 61 52-112 73-144 (200)
204 2qz4_A Paraplegin; AAA+, SPG7, 31.6 92 0.0032 28.6 6.9 51 45-95 91-156 (262)
205 1sxj_D Activator 1 41 kDa subu 31.4 21 0.00073 34.8 2.5 43 52-96 133-175 (353)
206 2orw_A Thymidine kinase; TMTK, 31.2 32 0.0011 30.7 3.4 53 52-109 76-137 (184)
207 3fxa_A SIS domain protein; str 31.0 42 0.0014 30.1 4.2 41 71-111 106-146 (201)
208 1tue_A Replication protein E1; 30.5 41 0.0014 31.1 4.0 55 51-109 102-175 (212)
209 1x92_A APC5045, phosphoheptose 29.8 74 0.0025 28.2 5.7 42 71-112 127-171 (199)
210 3etn_A Putative phosphosugar i 28.5 79 0.0027 28.9 5.8 43 70-112 119-163 (220)
211 3co5_A Putative two-component 28.4 83 0.0028 26.3 5.5 43 51-94 74-116 (143)
212 1ega_A Protein (GTP-binding pr 28.3 30 0.001 33.5 2.9 64 35-106 101-170 (301)
213 3fj1_A Putative phosphosugar i 27.4 76 0.0026 31.4 5.7 43 70-112 104-146 (344)
214 3cmw_A Protein RECA, recombina 26.7 2.1E+02 0.0071 34.9 10.1 74 41-114 797-904 (1706)
215 2i2w_A Phosphoheptose isomeras 26.4 57 0.002 29.6 4.3 41 71-111 145-185 (212)
216 3eua_A Putative fructose-amino 25.7 81 0.0028 30.9 5.6 43 70-112 87-129 (329)
217 4dgf_A Sulfate transporter sul 25.2 1.2E+02 0.0039 25.2 5.8 43 51-93 50-93 (135)
218 1srr_A SPO0F, sporulation resp 24.5 2.4E+02 0.0081 21.8 7.5 38 51-92 46-83 (124)
219 3jte_A Response regulator rece 24.2 1.9E+02 0.0063 23.2 6.9 40 51-93 48-87 (143)
220 2yva_A DNAA initiator-associat 24.1 1E+02 0.0035 27.2 5.5 41 71-111 123-166 (196)
221 3oiz_A Antisigma-factor antago 23.8 84 0.0029 24.7 4.3 53 50-104 41-94 (99)
222 3llo_A Prestin; STAS domain, c 23.6 1.6E+02 0.0053 24.5 6.4 42 52-93 63-105 (143)
223 2chg_A Replication factor C sm 23.4 66 0.0023 28.2 4.1 42 51-94 101-142 (226)
224 3trj_A Phosphoheptose isomeras 23.3 89 0.0031 28.1 5.0 41 71-111 128-171 (201)
225 2nly_A BH1492 protein, diverge 23.2 3.7E+02 0.013 25.1 9.4 62 1-67 80-141 (245)
226 1tmy_A CHEY protein, TMY; chem 22.4 2.2E+02 0.0076 21.8 6.8 40 51-93 46-85 (120)
227 3hu3_A Transitional endoplasmi 22.0 78 0.0027 33.0 4.8 50 45-94 290-350 (489)
228 3rhz_A GTF3, nucleotide sugar 21.9 1.9E+02 0.0067 28.3 7.5 85 5-96 29-114 (339)
229 1sbo_A Putative anti-sigma fac 21.7 2.8E+02 0.0094 21.3 7.2 47 47-93 37-85 (110)
230 2rdm_A Response regulator rece 21.7 2.9E+02 0.0098 21.5 7.5 41 52-95 50-91 (132)
231 3hba_A Putative phosphosugar i 21.6 92 0.0032 30.6 5.0 43 70-112 103-145 (334)
232 3t34_A Dynamin-related protein 21.5 54 0.0018 32.4 3.3 57 35-92 155-212 (360)
233 1jeo_A MJ1247, hypothetical pr 21.3 89 0.003 27.2 4.4 39 71-110 96-134 (180)
234 2qp9_X Vacuolar protein sortin 21.2 2.4E+02 0.0083 27.6 8.2 63 45-107 136-213 (355)
235 1xwi_A SKD1 protein; VPS4B, AA 21.0 2.8E+02 0.0096 26.7 8.5 62 45-106 98-174 (322)
236 3fkj_A Putative phosphosugar i 21.0 1.1E+02 0.0036 30.3 5.4 42 70-111 102-143 (347)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.93 E-value=2.9e-25 Score=221.40 Aligned_cols=116 Identities=26% Similarity=0.448 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++.++++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++
T Consensus 116 ~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 116 PEDEIRKRVDNALKRTGIEHLKDKPTH-----CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190 (275)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 356677889999999999988887665 599999999999999999999999999999999999999999999998
Q ss_pred -hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 -LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 -~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|+|||+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 191 ~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 191 KELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred hhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 5699999999997 4688899999999999999999998764
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.92 E-value=6.1e-25 Score=226.12 Aligned_cols=116 Identities=28% Similarity=0.383 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||.+.++++++ +|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++
T Consensus 136 ~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~ 210 (366)
T 3tui_C 136 PKDEVKRRVTELLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN 210 (366)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 456778899999999999987776654 699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|||+++|++ +++.++|||+++|++|+++..|+++++.
T Consensus 211 ~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 211 RRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65 99999999995 6789999999999999999999998764
No 3
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.92 E-value=2e-24 Score=214.14 Aligned_cols=115 Identities=26% Similarity=0.360 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.++.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++
T Consensus 133 ~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 207 (263)
T 2olj_A 133 REKAEAKAMELLDKVGLKDKAHAYPD-----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207 (263)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 34556789999999999988877665 5999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 208 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 208 EGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp TTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999995 5788899999999999999999988764
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.92 E-value=1.8e-24 Score=214.45 Aligned_cols=115 Identities=23% Similarity=0.365 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
+++.+++++++++.+||++. .+++++ +|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++
T Consensus 126 ~~~~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 200 (262)
T 1b0u_A 126 KHDARERALKYLAKVGIDERAQGKYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA 200 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTSCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 34556789999999999987 777665 599999999999999999999999999999999999999999999998
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++|+|||+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 201 ~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 201 EEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 8899999999995 5788899999999999999999988664
No 5
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.92 E-value=1.8e-24 Score=213.96 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 128 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 202 (257)
T 1g6h_A 128 EEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202 (257)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhCCCch-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC
Confidence 3456789999999999988887765 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~ 121 (527)
|+|||+++|++ +++.++||++++|++|++++.|++++
T Consensus 203 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 203 GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp TCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999997 46888999999999999999999887
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.91 E-value=3.6e-24 Score=221.68 Aligned_cols=116 Identities=24% Similarity=0.378 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..++++. +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~ 180 (381)
T 3rlf_A 106 KKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 (381)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 456778899999999999988777654 699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 181 ~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 181 KRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 75 99999999995 6899999999999999999999998864
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.91 E-value=3.1e-24 Score=220.68 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 3 NDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+++.+++++++++.+||++.++++++ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 112 ~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~ 186 (359)
T 3fvq_A 112 TAQERQRIEAMLELTGISELAGRYPH-----ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR 186 (359)
T ss_dssp SHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 45677899999999999988877665 5999999999999999999999999999999999999999998888754
Q ss_pred -CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 -DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 -~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
.|.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 187 ~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 187 ANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 699999999995 6899999999999999999999998764
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=4.8e-24 Score=210.61 Aligned_cols=115 Identities=29% Similarity=0.431 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 121 ~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 195 (256)
T 1vpl_A 121 SEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195 (256)
T ss_dssp HHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC
Confidence 3445788999999999988887765 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
|+|||+++|++ +++..+||++++|++|++++.|+++++.+
T Consensus 196 g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 196 GLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999996 57888999999999999999999887654
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.91 E-value=4.4e-24 Score=208.37 Aligned_cols=113 Identities=23% Similarity=0.325 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHcCCcccc-cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 3 NDEINDIVEETIIKMGLQACA-ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 3 ~~~~~~~v~~~l~~l~L~~~~-~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.++..+++.++++.+||.+.. ++++ .+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 118 GEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 456677899999999998643 5554 4699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++ |+|||+++|++. +.++||++++|++|+++..+++++.
T Consensus 193 ~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 193 EEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 75 999999999974 4589999999999999999987754
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.91 E-value=5.6e-24 Score=206.18 Aligned_cols=109 Identities=26% Similarity=0.317 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~ 189 (224)
T 2pcj_A 115 KEAKERGEYLLSELGLGDKLSRKPY-----ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189 (224)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 4556789999999999988877665 59999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeCh
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDA 119 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~ 119 (527)
|+|||+++|++. .+ ++||++++|++|++++.|+.
T Consensus 190 g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 190 GTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp TCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 999999999954 45 89999999999999999864
No 11
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.91 E-value=4.4e-24 Score=212.07 Aligned_cols=114 Identities=22% Similarity=0.365 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVL 77 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~------~p~llllDEPtsgLD~~~~~~i~~~l 77 (527)
++.+++++++++.+||.+..+++++ +|||||||||+|||+|+. +|++|||||||+|||+.++.++++.|
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l 190 (266)
T 4g1u_C 116 SQDRQALQQVMAQTDCLALAQRDYR-----VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLL 190 (266)
T ss_dssp TTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 3456789999999999988877665 599999999999999999 99999999999999999999999999
Q ss_pred HHHHhC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 78 KCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 78 ~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++++++ |.|||+++|++ +++..+|||+++|++|++++.|+++++.
T Consensus 191 ~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 191 RQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred HHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999876 57999999995 5788999999999999999999998763
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.91 E-value=7.3e-24 Score=217.98 Aligned_cols=116 Identities=23% Similarity=0.366 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++++ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 192 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVH 192 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877664 699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 193 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 193 DEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65 99999999995 6789999999999999999999998764
No 13
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.91 E-value=5.2e-24 Score=208.40 Aligned_cols=111 Identities=24% Similarity=0.383 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~ 85 (527)
+++++++++.+||++..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+++.|++++++ |+
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~ 178 (240)
T 2onk_A 104 DRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178 (240)
T ss_dssp HHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 5678999999999988777665 59999999999999999999999999999999999999999999999764 99
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|||+++|++ +++..+||++++|++|+++..|+++++.
T Consensus 179 tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 179 PILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999995 5788999999999999999999988764
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.90 E-value=9e-24 Score=217.68 Aligned_cols=116 Identities=22% Similarity=0.370 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++++ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 113 ~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 187 (353)
T 1oxx_K 113 SKEEIRKRVEEVAKILDIHHVLNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187 (353)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877665 599999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++||+++|++|+++..|+++++.
T Consensus 188 ~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 188 SRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65 99999999995 6789999999999999999999998764
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.90 E-value=1.4e-23 Score=217.56 Aligned_cols=116 Identities=23% Similarity=0.353 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++++ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 112 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 186 (372)
T 1g29_1 112 PRQEIDQRVREVAELLGLTELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186 (372)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877664 599999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|++ +++..++|++++|++|+++..|+++++.
T Consensus 187 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 187 RQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 65 99999999995 6789999999999999999999998764
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.90 E-value=9.6e-24 Score=217.79 Aligned_cols=116 Identities=25% Similarity=0.377 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++.+ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 106 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 180 (362)
T 2it1_A 106 PREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQ 180 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988777664 699999999999999999999999999999999999999999999997
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|+. +++..++|++++|++|+++..|+++++.
T Consensus 181 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~ 222 (362)
T 2it1_A 181 KELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVY 222 (362)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 65 99999999995 6789999999999999999999998764
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=7.4e-24 Score=207.43 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcC-CcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMG-LQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~-L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++.+++++++++.++ |.+..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~ 187 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 345677889999995 9877776654 6999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 188 ~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 188 EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 899999999995 5788999999999999999999887653
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.90 E-value=1e-23 Score=217.42 Aligned_cols=114 Identities=23% Similarity=0.402 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++.+++++++++.+||++..+++.+ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~ 182 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE 182 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh
Confidence 4456789999999999988877664 59999999999999999999999999999999999999999999999765
Q ss_pred -CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 84 -GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 84 -~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
|.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 183 ~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~ 222 (359)
T 2yyz_A 183 LGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVY 222 (359)
T ss_dssp HCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999995 6788999999999999999999998764
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.90 E-value=8.9e-24 Score=209.98 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCCc--ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 5 EINDIVEETIIKMGLQ--ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~--~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+.+++++++++.+||. +..+++++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++
T Consensus 112 ~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 186 (266)
T 2yz2_A 112 DPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186 (266)
T ss_dssp CSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 3456789999999998 87777664 5999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+|+|||+++|++ +.+..+||++++|++|+++..|+++++.+
T Consensus 187 ~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 187 LGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp TTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 799999999997 46788999999999999999999887653
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.90 E-value=1.4e-23 Score=217.22 Aligned_cols=116 Identities=20% Similarity=0.324 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++.+++++++++.+||++..+++.+ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++
T Consensus 114 ~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~ 188 (372)
T 1v43_A 114 PKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 188 (372)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH
Confidence 345667889999999999988877664 699999999999999999999999999999999999999999999998
Q ss_pred hC-CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LD-GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 189 ~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~ 230 (372)
T 1v43_A 189 QKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVY 230 (372)
T ss_dssp HHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 75 99999999995 6788999999999999999999998764
No 21
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.90 E-value=2.2e-23 Score=205.59 Aligned_cols=111 Identities=26% Similarity=0.402 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD- 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~- 83 (527)
+.+++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 445788999999999988877665 59999999999999999999999999999999999999999999999877
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
|+|||+++|++ +++.++||++++|++|+ ++.|+++++
T Consensus 179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999995 57889999999999999 999988765
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.90 E-value=9.7e-24 Score=210.98 Aligned_cols=112 Identities=29% Similarity=0.456 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..++++++++.+||++..+++++ +|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|
T Consensus 137 ~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g 211 (279)
T 2ihy_A 137 EIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211 (279)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCC
Confidence 445678999999999988887765 599999999999999999999999999999999999999999999998779
Q ss_pred CEE--EEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 85 RIV--VCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 85 ~tv--i~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
+|| |+++|++ +++.++||++++|++|++++.|+++++
T Consensus 212 ~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 212 PTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred CEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999 9999996 567889999999999999999998765
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.90 E-value=2.7e-23 Score=206.63 Aligned_cols=115 Identities=26% Similarity=0.339 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 4 DEINDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
++.+++++++++.+||. +..+++++ .+|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 137 ~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~ 212 (267)
T 2zu0_C 137 FDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212 (267)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 34457889999999996 45665543 14999999999999999999999999999999999999999999999977
Q ss_pred CCCEEEEEecCChhHHHhh-cCeEEEEeCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~-~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++ +++..+ ||++++|++|++++.|+++++.
T Consensus 213 ~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 213 GKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp SSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred cCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 799999999996 456665 8999999999999999988764
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.89 E-value=3.3e-23 Score=204.08 Aligned_cols=111 Identities=23% Similarity=0.286 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHcCC-cccccccccCcccCC-CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 5 EINDIVEETIIKMGL-QACAETKIGNWHLRG-ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L-~~~~~~~i~~~~~~~-lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+..++++++++.+|| ++..+++++ . |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++
T Consensus 117 ~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~ 191 (250)
T 2d2e_A 117 EFWTKVKKALELLDWDESYLSRYLN-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191 (250)
T ss_dssp HHHHHHHHHHHHHTCCGGGGGSBTT-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCChhHhcCCcc-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh
Confidence 445678999999999 577776654 5 999999999999999999999999999999999999999999999977
Q ss_pred CCCEEEEEecCChhHHHhh-cCeEEEEeCCeEEEEeChhh
Q 009738 83 DGRIVVCSIHQPSSHLFYL-FDDLLLLSNGETIYFGDAKM 121 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~-~d~v~~l~~G~~~~~G~~~~ 121 (527)
+|+|||+++|++. .+..+ +|++++|++|+++..|+++.
T Consensus 192 ~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 192 PNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred cCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 7999999999974 56777 59999999999999999873
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.89 E-value=5.3e-23 Score=202.30 Aligned_cols=110 Identities=23% Similarity=0.342 Sum_probs=101.5
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT-------VLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~-------llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++.+||++..+++++ +||||||||++||++|+.+|+ +|||||||+|||+.++..+.+.|++
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~ 178 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence 4678899999999988877654 599999999999999999999 9999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
++++|+|||+++|++ +.+.+++|++++|++|+++..|+++++
T Consensus 179 l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 179 LSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp HHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred HHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 987899999999995 578899999999999999999988765
No 26
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.89 E-value=4e-23 Score=212.18 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~t 86 (527)
++++++++.+||++..+++.+ +|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++ |.|
T Consensus 106 ~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~t 180 (348)
T 3d31_A 106 KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLT 180 (348)
T ss_dssp HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 678999999999988877664 59999999999999999999999999999999999999999999999764 999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+++|++ +++..++||+++|++|+++..|+++++.
T Consensus 181 ii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 181 VLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999995 6789999999999999999999998764
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.87 E-value=5.3e-22 Score=195.06 Aligned_cols=113 Identities=23% Similarity=0.355 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCcccccccc------cCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACAETKI------GNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i------~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++++++++.+++.+..++.. -+..+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 113 ~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 192 (247)
T 2ff7_A 113 EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC 192 (247)
T ss_dssp HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 46778888889887665432 123456899999999999999999999999999999999999999999999995
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++. .+. .||++++|++|++++.|+++++.
T Consensus 193 -~g~tviivtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 193 -KGRTVIIIAHRLS-TVK-NADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp -TTSEEEEECSSGG-GGT-TSSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 5899999999975 444 59999999999999999988664
No 28
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.87 E-value=4.8e-22 Score=196.95 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+||+ +..+++++ +||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++
T Consensus 105 ~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--- 176 (263)
T 2pjz_A 105 RDLFLEMLKALKLGEEILRRKLY-----KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--- 176 (263)
T ss_dssp HHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---
T ss_pred HHHHHHHHHHcCCChhHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---
Confidence 45788999999998 87777665 5999999999999999999999999999999999999999999998854
Q ss_pred EEEEEecCChhHHHhhcC-eEEEEeCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFD-DLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d-~v~~l~~G~~~~~G~~~~~~ 123 (527)
|+|+++|++ +++.++|| ++++|++|++++.|+++++.
T Consensus 177 tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 177 EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999996 56788999 99999999999999998765
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.87 E-value=6.5e-22 Score=197.00 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.9
Q ss_pred HHHHHHHc--CCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009738 10 VEETIIKM--GLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (527)
Q Consensus 10 v~~~l~~l--~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~t 86 (527)
+++.++.+ ||.+..++++ .+|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++++ +|+|
T Consensus 135 ~~~~l~~l~~gl~~~~~~~~-----~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~t 209 (271)
T 2ixe_A 135 AHDFISGFPQGYDTEVGETG-----NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209 (271)
T ss_dssp CHHHHHHSTTGGGSBCCGGG-----TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSE
T ss_pred HHHHHHhhhcchhhhhcCCc-----CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCE
Confidence 45667777 6766555544 46999999999999999999999999999999999999999999999875 4899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
||+++|++. .+. .||++++|++|+++..|+++++.
T Consensus 210 viivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 210 VLLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQLM 244 (271)
T ss_dssp EEEECSCHH-HHT-TCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999964 454 59999999999999999988764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.86 E-value=5.7e-22 Score=194.42 Aligned_cols=114 Identities=25% Similarity=0.319 Sum_probs=98.2
Q ss_pred HHHHHHHHHHcCCccccccccc------CcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAETKIG------NWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~------~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++++++++.+++.+..++... +..+.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 106 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 106 DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 3567888999999877654321 2345689999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+ +|+|||+++|++. .+ ..||++++|++|+++..|+++++.
T Consensus 186 ~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 186 M-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp H-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHH
T ss_pred c-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHH
Confidence 7 6899999999964 45 469999999999999999887664
No 31
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.86 E-value=3.1e-21 Score=194.84 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~-------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
++++++++..++.+.. ++.++. ...+||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 4566677777776543 444443 45679999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.+ ++|+|+++|++. .+.. ||+|++|++|+++..|+++++.+
T Consensus 237 ~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 237 CA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp HT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred cC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 65 689999999964 5655 99999999999999999988754
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=2.8e-21 Score=191.26 Aligned_cols=112 Identities=23% Similarity=0.375 Sum_probs=95.0
Q ss_pred HHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~-------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.+.++.++|.+.. ++.++ ..+..|||||||||+|||+|+.+|++|||||||+|||+.++..+++.|+++
T Consensus 123 ~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 123 EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 4566777877776543 33333 345689999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
++ |+|||+++|++. .+ ..||++++|++|+++..|+++++.
T Consensus 202 ~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 202 RK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp TT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHH
T ss_pred cC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 65 899999999975 44 459999999999999999988764
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=200.40 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCcccccccccC------cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAETKIGN------WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~------~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++++++++.++|.+..++.... ...++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++
T Consensus 122 ~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 122 DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 46788999999999887765532 112339999999999999999999999999999999999999999999986
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
. ++.|+|+++|+. + ....+||+++|++|+++..|+++++.+
T Consensus 202 ~-~~~tvi~vtHd~-e-~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 202 F-ADCTVILCEARI-E-AMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp T-TTSCEEEECSSS-G-GGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred h-CCCEEEEEEcCH-H-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 4 478999999996 3 456799999999999999999988753
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.83 E-value=1.8e-20 Score=182.06 Aligned_cols=110 Identities=18% Similarity=0.262 Sum_probs=89.1
Q ss_pred HHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHH
Q 009738 10 VEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQV-LKCIA 81 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~-------~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~-l~~l~ 81 (527)
+++.++.+++.+..+. .++ ....+||||||||++|||+|+.+|++++|||||+|||+.++..+.+. ++++.
T Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 178 (229)
T 2pze_A 100 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178 (229)
T ss_dssp HHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh
Confidence 4455666666544332 222 23568999999999999999999999999999999999999999997 45654
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++. .+. .||++++|++|+++..|+++++.
T Consensus 179 -~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 179 -ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp -TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 4799999999964 454 59999999999999999988664
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=182.59 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=81.1
Q ss_pred cccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCCEEEEEecCChhHHHhhcCeEE
Q 009738 30 WHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLK---CIALDGRIVVCSIHQPSSHLFYLFDDLL 106 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~---~l~~~~~tvi~~~H~~~~~i~~~~d~v~ 106 (527)
..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+++.|+ +++ +|+|+|+++|++. .+ ..||+++
T Consensus 123 ~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~ 199 (237)
T 2cbz_A 123 EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVII 199 (237)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEE
Confidence 3466899999999999999999999999999999999999999999995 443 5899999999975 34 5699999
Q ss_pred EEeCCeEEEEeChhhHH
Q 009738 107 LLSNGETIYFGDAKMAV 123 (527)
Q Consensus 107 ~l~~G~~~~~G~~~~~~ 123 (527)
+|++|+++..|+++++.
T Consensus 200 ~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 200 VMSGGKISEMGSYQELL 216 (237)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEeCCEEEEeCCHHHHh
Confidence 99999999999988764
No 36
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.82 E-value=4.8e-20 Score=203.20 Aligned_cols=113 Identities=26% Similarity=0.388 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++.+++.+. .|+.+|+ ...+||||||||++|||||+.+|++++|||||+|||+.++..+.+.|++
T Consensus 450 ~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 450 AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 4678889999988654 4566654 3468999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.+ |+|+|+++|++. .+ +.||++++|++|+++..|++++..
T Consensus 529 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 529 LMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp HHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC--
T ss_pred Hhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHH
Confidence 976 799999999964 45 459999999999999999988764
No 37
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.3e-20 Score=204.84 Aligned_cols=111 Identities=16% Similarity=0.303 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~t 86 (527)
+.++++++.++|.+.++++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|
T Consensus 446 ~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~t 520 (608)
T 3j16_B 446 QFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKT 520 (608)
T ss_dssp HHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 457789999999988777665 5999999999999999999999999999999999999999999999964 5999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC--CeEEEEeChhhHHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~--G~~~~~G~~~~~~~ 124 (527)
||+++|+. +++..++||+++|++ |+++..|+++++..
T Consensus 521 viivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 521 AFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp EEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 99999995 689999999999986 99999999988764
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.82 E-value=5.1e-20 Score=202.47 Aligned_cols=114 Identities=23% Similarity=0.315 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++.+++.+.. |+.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|++
T Consensus 447 ~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b60_A 447 REQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525 (582)
T ss_dssp HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 45678888888887643 445553 4568999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+.+ |+|+|+++|++. .+ +.||++++|++|+++..|++++..+
T Consensus 526 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 526 LQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 975 899999999975 44 5699999999999999999987653
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.82 E-value=4.6e-20 Score=202.81 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~-------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
+++++++++.+++.+.. |+.+|+ ...+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 447 REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 45678888988887654 344543 3567999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+.+ |+|+|+++|++. .+ +.||++++|++|+++..|++++..
T Consensus 526 ~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 526 LQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHADLL 566 (582)
T ss_pred HcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 865 899999999974 44 469999999999999999988764
No 40
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.81 E-value=9e-21 Score=182.12 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
+++++++++.+||++. ++++ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|
T Consensus 112 ~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~t 185 (214)
T 1sgw_A 112 KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185 (214)
T ss_dssp HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCE
Confidence 4678999999999876 6554 469999999999999999999999999999999999999999999999877899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeCCeE
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~G~~ 113 (527)
||+++|++ +++..++|+++++ +|++
T Consensus 186 iiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 186 VIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred EEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 99999997 4677888887754 4443
No 41
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.81 E-value=7.1e-20 Score=199.02 Aligned_cols=111 Identities=19% Similarity=0.278 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~t 86 (527)
++++++++.+||.+..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~t 454 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKT 454 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCE
Confidence 567889999999887777665 5999999999999999999999999999999999999999999999975 5999
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC--CeEEEEeChhhHHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~--G~~~~~G~~~~~~~ 124 (527)
||+++|+. +++..+|||+++|++ |+++..|+++++..
T Consensus 455 vi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 455 ALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999995 688999999999986 88989999987654
No 42
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.81 E-value=1.1e-19 Score=199.73 Aligned_cols=112 Identities=20% Similarity=0.288 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~ 85 (527)
.++++++++.+||.+..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|.
T Consensus 449 ~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 523 (607)
T 3bk7_A 449 NFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523 (607)
T ss_dssp HHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCchHhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3567889999999988877765 5999999999999999999999999999999999999999999999975 689
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeC--CeEEEEeChhhHHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAVK 124 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~--G~~~~~G~~~~~~~ 124 (527)
|||+++||. .++..++||+++|++ |++...|+++++..
T Consensus 524 tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 524 TALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999995 678899999999986 88889999987754
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=1.9e-19 Score=197.87 Aligned_cols=113 Identities=26% Similarity=0.370 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCcc-------cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQA-------CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-------~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.+.++..++.+ -.|+.+++ ...+||||||||++|||||+.+|++++|||||++||+.+..++.+.|+++
T Consensus 447 ~~~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 447 DEIVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp HHHHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 34555556555543 34555553 45679999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
. +|+|+|+++|+++ .+ ..|||+++|++|+++..|++++..+
T Consensus 526 ~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 526 T-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp S-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHHHHH
T ss_pred C-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 5899999999974 34 5899999999999999999998754
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.80 E-value=1.9e-19 Score=197.68 Aligned_cols=113 Identities=27% Similarity=0.401 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCccc-------ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQAC-------AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~-------~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.+.++..++.+. .|+.+|+ ...+||||||||++|||||+.+|++++|||||+|||+.++..+.+.++++
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 456677777766543 4555553 44679999999999999999999999999999999999999999999988
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
. +++|+|+++|+++ .+ +.||++++|++|+++..|++++..+
T Consensus 524 ~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 524 S-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp T-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred c-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 5 4689999999975 44 4599999999999999999988753
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.80 E-value=1.6e-19 Score=181.19 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=87.9
Q ss_pred HHHHHHHcCCcccccc-------cccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHH
Q 009738 10 VEETIIKMGLQACAET-------KIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVL-KCIA 81 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~-------~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l-~~l~ 81 (527)
+++.++.+++.+..+. .++ ..+.+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+ ++++
T Consensus 129 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~ 207 (290)
T 2bbs_A 129 YRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207 (290)
T ss_dssp HHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence 4455666676544322 222 234689999999999999999999999999999999999999999974 5554
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAV 123 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~ 123 (527)
+|+|||+++|++ +.+ ..||++++|++|+++..|+++++.
T Consensus 208 -~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 208 -ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp -TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHH
T ss_pred -CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHh
Confidence 489999999996 445 469999999999999999988764
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.79 E-value=2.1e-19 Score=195.06 Aligned_cols=110 Identities=19% Similarity=0.285 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRI 86 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~t 86 (527)
+.++++++.++|.+..+++++ .|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ .|.|
T Consensus 364 ~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~t 438 (538)
T 3ozx_A 364 WFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438 (538)
T ss_dssp HHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCE
Confidence 457888999999888777665 5999999999999999999999999999999999999999999999986 5899
Q ss_pred EEEEecCChhHHHhhcCeEEEEeC--CeEEEEeChhhHH
Q 009738 87 VVCSIHQPSSHLFYLFDDLLLLSN--GETIYFGDAKMAV 123 (527)
Q Consensus 87 vi~~~H~~~~~i~~~~d~v~~l~~--G~~~~~G~~~~~~ 123 (527)
||+++|+. +++..+|||+++|++ |.....+++.+..
T Consensus 439 vi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 439 TFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp EEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred EEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999995 689999999999986 6666667665543
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.79 E-value=2e-19 Score=198.22 Aligned_cols=113 Identities=20% Similarity=0.341 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCcccc-------cccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACA-------ETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~-------~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.+.++..++.+.. |+.+|+ ...+||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 3455666666665433 344432 33579999999999999999999999999999999999999999999998
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
. +|+|+|+++|+++ .+. .||++++|++|+++..|++++..+
T Consensus 538 ~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 538 M-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp H-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHHHHHH
T ss_pred c-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 6 5899999999975 454 599999999999999999988753
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.79 E-value=6.3e-19 Score=196.87 Aligned_cols=109 Identities=24% Similarity=0.345 Sum_probs=94.9
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+++.+.++.+||.. ..+++ +.+|||||||||+|||+|+.+| ++|||||||+|||+.++.++++.|++++++
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~ 595 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhccCC-----chhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 45667888899864 23444 4569999999999999999987 499999999999999999999999999988
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|++. .+ ..|||+++| ++|++++.|+++++.
T Consensus 596 g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 596 GDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 999999999964 44 679999999 899999999998764
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.78 E-value=4.5e-19 Score=194.94 Aligned_cols=99 Identities=25% Similarity=0.400 Sum_probs=91.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++++++|.||
T Consensus 207 ~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 281 (607)
T 3bk7_A 207 GKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAV 281 (607)
T ss_dssp SCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 467899999999988887775 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
|+++|+. +.+..++|++++|++|.
T Consensus 282 IivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 282 LVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EEECSCH-HHHHHHCSEEEEEESCT
T ss_pred EEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999995 57889999999998754
No 50
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=5.9e-19 Score=197.10 Aligned_cols=104 Identities=24% Similarity=0.366 Sum_probs=92.9
Q ss_pred HHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 009738 13 TIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC 89 (527)
Q Consensus 13 ~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~ 89 (527)
+++.+||.+. .+++++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+
T Consensus 185 ~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp HHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 5888898764 466554 599999999999999999998 99999999999999999999999999988999999
Q ss_pred EecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 90 SIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 90 ~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
++|++. . ...||++++| ++|++++.|+++++.
T Consensus 260 vtHd~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 260 VEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp ECCCHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred EeCCHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999964 4 4569999999 899999999998764
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.78 E-value=3.4e-19 Score=193.71 Aligned_cols=99 Identities=25% Similarity=0.383 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||++..+++++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|.||
T Consensus 137 ~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tv 211 (538)
T 1yqt_A 137 GKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSV 211 (538)
T ss_dssp SCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 468899999999888777765 599999999999999999999999999999999999999999999998889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCe
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
|+++|+. .++..+||++++|++|.
T Consensus 212 i~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 212 LVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEET
T ss_pred EEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 9999995 68899999999998653
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.4e-19 Score=194.76 Aligned_cols=103 Identities=25% Similarity=0.391 Sum_probs=95.3
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||++..+++++ +|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tv 274 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEE
T ss_pred HHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 678999999999998888775 599999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEEE
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIYF 116 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~~ 116 (527)
|+++|+. +++..++|++++|++|..++.
T Consensus 275 i~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 275 ICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp EEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred EEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 9999995 689999999999998876553
No 53
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=1.1e-18 Score=157.74 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=73.6
Q ss_pred CcccCCCCHHHHHHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 29 NWHLRGISSGEKKRLSIS------IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 29 ~~~~~~lSgGer~Rl~ia------~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++ ++...+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999876 899999999999999999999999999999999988899999999996 467899
Q ss_pred CeEEEEe--CCe
Q 009738 103 DDLLLLS--NGE 112 (527)
Q Consensus 103 d~v~~l~--~G~ 112 (527)
|++++|+ +|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 9999994 554
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=1.7e-18 Score=197.22 Aligned_cols=108 Identities=22% Similarity=0.375 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCc-ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 7 NDIVEETIIKMGLQ-ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+++++++++.+||. +..+++++ +||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++ .|.
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~ 596 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGI 596 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCS
T ss_pred HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCC
Confidence 46788999999994 67777775 5999999999999999999999999999999999999999999998 689
Q ss_pred EEEEEecCChhHHHhhcCeEEEEeCCeEE-EEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLLSNGETI-YFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l~~G~~~-~~G~~~~~~ 123 (527)
|+|+++|+. .++.++||++++|++|+++ +.|++++..
T Consensus 597 tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 597 TSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp EEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred EEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999994 6889999999999999997 689887654
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.77 E-value=3.7e-19 Score=193.05 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEE
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIV 87 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tv 87 (527)
++++++++.+||.+..|++++ +|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ |+||
T Consensus 117 ~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~ti 190 (538)
T 3ozx_A 117 GKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYV 190 (538)
T ss_dssp SCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEE
T ss_pred HHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEE
Confidence 357899999999998888775 5999999999999999999999999999999999999999999999976 8999
Q ss_pred EEEecCChhHHHhhcCeEEEEeCCeEEE
Q 009738 88 VCSIHQPSSHLFYLFDDLLLLSNGETIY 115 (527)
Q Consensus 88 i~~~H~~~~~i~~~~d~v~~l~~G~~~~ 115 (527)
|+++|+. +++..+||++++|++|...+
T Consensus 191 i~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 191 IVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp EEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred EEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 9999995 68999999999998765443
No 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.5e-18 Score=197.27 Aligned_cols=110 Identities=23% Similarity=0.330 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+++.++|+.+||.... .+ ..+.+|||||||||.||++|+.+| ++|||||||+|||+.++.++++.|++++++|
T Consensus 783 ~~~~~~L~~vGL~~~~---lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G 858 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVK---LG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858 (916)
T ss_dssp HHHHHHHHHTTGGGSB---TT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCchhh---cc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 5677899999997532 11 234579999999999999999876 7999999999999999999999999999899
Q ss_pred CEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
.|||+++|++ +.+ ..+|+|++| ++|++++.|+++++.
T Consensus 859 ~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 NTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 9999999996 445 559999999 899999999999875
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=3.1e-18 Score=193.27 Aligned_cols=110 Identities=24% Similarity=0.265 Sum_probs=97.8
Q ss_pred HHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 7 NDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ---PTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
.+++.++++.+||... .++++ ..|||||||||.||++|+.+ |++|||||||+|||+.++.++.+.|+++++
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~ 781 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD 781 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3567899999999863 35544 46999999999999999996 799999999999999999999999999999
Q ss_pred CCCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 83 DGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 83 ~~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
+|.|||+++|+. +++ ..||++++| ++|+++..|+++++.
T Consensus 782 ~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 782 AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 999999999995 566 789999999 699999999998764
No 58
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=5.2e-18 Score=191.89 Aligned_cols=109 Identities=24% Similarity=0.344 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+++.++++.+||.. ..+++++ .|||||||||+||++|+.+| ++|||||||+|||+.++.++++.|++++++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~-----~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 897 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPAT-----TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGG-----GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCchh-----hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34678999999986 5565554 69999999999999999875 999999999999999999999999999999
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
|.|||+++|+. +++ ..+|++++| ++|+++..|+++++.
T Consensus 898 G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 99999999995 444 689999999 789999999998764
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=4.2e-18 Score=193.65 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC
Q 009738 9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIALDGR 85 (527)
Q Consensus 9 ~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~~~ 85 (527)
+..+.+..+||.+. .++.++ +|||||||||.||++|+++|+ +|+|||||+|||+..+..+++.|++++++|.
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 34567888999764 455554 599999999999999999887 9999999999999999999999999998899
Q ss_pred EEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 86 IVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 86 tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
|||+++|++ +.+ ..+|++++| ++|++++.|+++++.
T Consensus 518 TvivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 518 TVIVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEEEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 999999995 445 559999999 899999999998764
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=4.6e-18 Score=192.31 Aligned_cols=112 Identities=24% Similarity=0.369 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+|+.+++ +.++.+||... .|+.++ +|||||||||.||++|..+| ++|+|||||+|||+.....+.+.|++|
T Consensus 479 ~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 552 (972)
T 2r6f_A 479 REIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 552 (972)
T ss_dssp HHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 3556666 45899999864 566665 59999999999999999985 999999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
++.|.|||+++|++ +++ ..+|+|++| ++|++++.|++++..
T Consensus 553 r~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 553 RDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 98999999999995 444 579999999 799999999998754
No 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=8.6e-18 Score=190.74 Aligned_cols=110 Identities=23% Similarity=0.316 Sum_probs=96.6
Q ss_pred HHHHHHHHHcCCcc-cccccccCcccCCCCHHHHHHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 8 DIVEETIIKMGLQA-CAETKIGNWHLRGISSGEKKRLSISIEILTQP---TVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 8 ~~v~~~l~~l~L~~-~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+++.++++.+||.. ..++++ ..|||||||||+||++|+.+| ++|||||||+|||+.++.++.+.|++++++
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 915 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK 915 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 34578899999986 455555 469999999999999999875 999999999999999999999999999989
Q ss_pred CCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHHH
Q 009738 84 GRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAVK 124 (527)
Q Consensus 84 ~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~~ 124 (527)
|.|||+++|++ +.+ ..||++++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl-~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNL-DVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCH-HHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCH-HHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99999999995 445 689999999 6899999999987653
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=8.6e-18 Score=190.77 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQ--PTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~--p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+|+.+++ +.++.+||... .++.++ +|||||||||.||++|..+ |++|+|||||+|||+.....+.+.|++|
T Consensus 496 ~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 569 (993)
T 2ygr_A 496 KEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRL 569 (993)
T ss_dssp HHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 3455666 35889999864 566665 5999999999999999999 5899999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAVK 124 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~~ 124 (527)
++.|.|||+++|++ +. ...+|+|++| ++|++++.|++++..+
T Consensus 570 r~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 570 RDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 99999999999995 44 4579999999 6999999999987643
No 63
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=6.2e-18 Score=201.19 Aligned_cols=114 Identities=29% Similarity=0.403 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++. +-.||.+|+. -.+||||||||++|||||+++|+||+||||||+||+.+...|.+.|++
T Consensus 1184 d~ei~~Al~~a~l~~~I~~Lp~GldT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A 1184 MAQVEEAARLANIHNFIAELPEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHTSTTTTCSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHcCcCCCCCEecCC-CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 45677778877764 3467888863 346999999999999999999999999999999999999999999987
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+. +|+|+|+++|+.+. ...||||++|++|+++++|++++..+
T Consensus 1263 ~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1263 AR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp TS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred Hc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 54 47999999999753 45699999999999999999998764
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.72 E-value=1.7e-17 Score=187.30 Aligned_cols=112 Identities=21% Similarity=0.364 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCCccc-ccccccCcccCCCCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
+++.++++ .+..+||.+. .++.+. .|||||||||.||++|+.+| ++|+|||||+|||+.....+.+.|++|
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L 427 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL 427 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence 35666676 6889999865 566665 59999999999999999999 599999999999999999999999999
Q ss_pred HhCCCEEEEEecCChhHHHhhcCeEEEE------eCCeEEEEeChhhHH
Q 009738 81 ALDGRIVVCSIHQPSSHLFYLFDDLLLL------SNGETIYFGDAKMAV 123 (527)
Q Consensus 81 ~~~~~tvi~~~H~~~~~i~~~~d~v~~l------~~G~~~~~G~~~~~~ 123 (527)
++.|.|||+++|+. + +...+|+|++| .+|++++.|++++..
T Consensus 428 ~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 428 KRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp HTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999999996 3 55689999999 799999999988754
No 65
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.72 E-value=1.1e-17 Score=198.95 Aligned_cols=114 Identities=27% Similarity=0.362 Sum_probs=98.1
Q ss_pred HHHHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 7 ~~~v~~~l~~l~L~-------~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
++++.++++..++. +-.||.+|+.. ..||||||||++||||++++|+|++||||||+||+.+...+.+.|++
T Consensus 521 ~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~ 599 (1321)
T 4f4c_A 521 REEMVAACKMANAEKFIKTLPNGYNTLVGDRG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK 599 (1321)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHccchhHHHcCCCCCccEecCCC-CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence 45677777776653 45678888743 46999999999999999999999999999999999999999999998
Q ss_pred HHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 80 IALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 80 l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+.+ |+|+|+++|+++ ..+.+|+|++|++|+++..|+.++..+
T Consensus 600 ~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 600 AAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 764 799999999975 457799999999999999999988753
No 66
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.72 E-value=1.6e-17 Score=197.25 Aligned_cols=112 Identities=26% Similarity=0.398 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCc-------ccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 9 IVEETIIKMGLQ-------ACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 9 ~v~~~l~~l~L~-------~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
++.+.++..++. +-.||.+|+ ....||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 1140 ~i~~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~- 1217 (1284)
T 3g5u_A 1140 EIVRAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA- 1217 (1284)
T ss_dssp HHHHHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-
Confidence 344555555443 345677764 34679999999999999999999999999999999999999999999885
Q ss_pred hCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHH
Q 009738 82 LDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 82 ~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
.+|+|+|+++|++. .+ ..||||++|++|+++..|++++..+
T Consensus 1218 ~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1218 REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 45899999999975 45 4599999999999999999997754
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.71 E-value=1.5e-17 Score=172.40 Aligned_cols=84 Identities=26% Similarity=0.370 Sum_probs=76.8
Q ss_pred cccCCCCHHHHHHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcC
Q 009738 30 WHLRGISSGEKKRLSISIEIL------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (527)
Q Consensus 30 ~~~~~lSgGer~Rl~ia~~l~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d 103 (527)
..+.+|||||||||+||++|+ .+|++|||||||+|||+.++..+++.|++++++|.|||+++|++. ....+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 355679999999999999999 699999999999999999999999999999888999999999963 367899
Q ss_pred eEEEEeCCeEEE
Q 009738 104 DLLLLSNGETIY 115 (527)
Q Consensus 104 ~v~~l~~G~~~~ 115 (527)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 68
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.70 E-value=3.2e-17 Score=194.61 Aligned_cols=99 Identities=27% Similarity=0.387 Sum_probs=86.9
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhh
Q 009738 22 CAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 22 ~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~ 101 (527)
-.||.+|+ ...+||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++ .+. .
T Consensus 515 g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~i~-~ 590 (1284)
T 3g5u_A 515 QFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLS-TVR-N 590 (1284)
T ss_dssp GGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHH-HHT-T
T ss_pred cccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HHH-c
Confidence 45666764 345799999999999999999999999999999999999999999998865 5899999999964 554 4
Q ss_pred cCeEEEEeCCeEEEEeChhhHHH
Q 009738 102 FDDLLLLSNGETIYFGDAKMAVK 124 (527)
Q Consensus 102 ~d~v~~l~~G~~~~~G~~~~~~~ 124 (527)
+|+|++|++|++++.|++++..+
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999987653
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.70 E-value=9.5e-18 Score=191.08 Aligned_cols=103 Identities=25% Similarity=0.361 Sum_probs=88.4
Q ss_pred HHHHHHHHHHcCCccc--ccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 7 NDIVEETIIKMGLQAC--AETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~--~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
.++++++++.+||.+. .+++++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +
T Consensus 877 ~~~i~~~Le~lGL~~~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g 948 (986)
T 2iw3_A 877 RKEIEEHCSMLGLDPEIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---E 948 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---S
T ss_pred HHHHHHHHHHcCCCchhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---C
Confidence 4578899999999753 455554 59999999999999999999999999999999999999999888764 6
Q ss_pred CEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeC
Q 009738 85 RIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 85 ~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
.|||+++|++ +++.++||++++|++|+++..|+
T Consensus 949 ~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 949 GGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp SEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred CEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 7999999995 67889999999999999987764
No 70
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.65 E-value=6.6e-16 Score=162.42 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEE----
Q 009738 35 ISSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL---- 108 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l---- 108 (527)
+|||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.+||+++|++ ++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 689999999996 356789999999
Q ss_pred eCCeEEEEe
Q 009738 109 SNGETIYFG 117 (527)
Q Consensus 109 ~~G~~~~~G 117 (527)
.+|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899987654
No 71
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.54 E-value=1.5e-14 Score=134.01 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=67.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE
Q 009738 32 LRGISSGEKKRLSISIEILTQ----PTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
+..||||||||++||++++.+ |++++|||||+|||+.++..+.+.|++++++ .++|+++|++ .....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEEE
Confidence 567999999999999999854 6999999999999999999999999998754 6788888984 46789999997
Q ss_pred Ee--CCe
Q 009738 108 LS--NGE 112 (527)
Q Consensus 108 l~--~G~ 112 (527)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 564
No 72
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.53 E-value=1.9e-14 Score=146.61 Aligned_cols=81 Identities=23% Similarity=0.239 Sum_probs=70.9
Q ss_pred ccCCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeE-
Q 009738 31 HLRGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL- 105 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v- 105 (527)
.+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.++|+++|++ ++...+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 34579999999999999997 5789999999999999999999999999985 578999999995 467889987
Q ss_pred -EEEeCCeEE
Q 009738 106 -LLLSNGETI 114 (527)
Q Consensus 106 -~~l~~G~~~ 114 (527)
++|.+|+..
T Consensus 293 ~v~~~~g~s~ 302 (322)
T 1e69_A 293 GVTMVNGVSA 302 (322)
T ss_dssp EEEESSSCEE
T ss_pred EEEEeCCEEE
Confidence 778777543
No 73
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.53 E-value=1.3e-14 Score=148.95 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=69.8
Q ss_pred ccCCCCHHHHH------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 31 HLRGISSGEKK------RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 31 ~~~~lSgGer~------Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
.++.||||||| |+++|++++.+|++|+|||||+|||+..+..+.+.|+++.++|.++|+++|++ ++.+.||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45679999999 66777888889999999999999999999999999999988889999999994 47889999
Q ss_pred EEEEe
Q 009738 105 LLLLS 109 (527)
Q Consensus 105 v~~l~ 109 (527)
++.|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 74
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.53 E-value=1.3e-14 Score=157.08 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=71.1
Q ss_pred ccCCC-CHHHHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE
Q 009738 31 HLRGI-SSGEKKRLSISIEILTQP--TVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL 107 (527)
Q Consensus 31 ~~~~l-SgGer~Rl~ia~~l~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~ 107 (527)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.+||+++|+|. +...+|++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 34567 999999999999999999 99999999999999999999999999987 899999999963 4557999999
Q ss_pred EeCC
Q 009738 108 LSNG 111 (527)
Q Consensus 108 l~~G 111 (527)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9765
No 75
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.52 E-value=1.1e-14 Score=150.01 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=76.5
Q ss_pred CcccC-CCCHHHHHHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHH
Q 009738 29 NWHLR-GISSGEKKRLSISIEIL---------TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHL 98 (527)
Q Consensus 29 ~~~~~-~lSgGer~Rl~ia~~l~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i 98 (527)
+..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. +|+|+++|. . .
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T-
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c-
Confidence 44456 79999999999999999 8999999999999999999999999998874 688888884 3 2
Q ss_pred HhhcCeEEEEeCCeEEEEeChhhH
Q 009738 99 FYLFDDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 99 ~~~~d~v~~l~~G~~~~~G~~~~~ 122 (527)
.+|+++++++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998765
No 76
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=4.7e-13 Score=138.95 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHcCCccc-------ccccccC----cccCCCCHHHHHHH------HHHHHHHhC-CCEEEEeCCCCCCCH
Q 009738 6 INDIVEETIIKMGLQAC-------AETKIGN----WHLRGISSGEKKRL------SISIEILTQ-PTVLLLDEPTSGLDS 67 (527)
Q Consensus 6 ~~~~v~~~l~~l~L~~~-------~~~~i~~----~~~~~lSgGer~Rl------~ia~~l~~~-p~llllDEPtsgLD~ 67 (527)
..+.+++.++.+++.+. .+..+.+ ..++.+|||||||+ ++|++++.+ |++++|||||+|||+
T Consensus 241 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~ 320 (371)
T 3auy_A 241 IQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDE 320 (371)
T ss_dssp HHHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCH
T ss_pred HHHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCH
Confidence 34556677888877551 1111111 34567999999988 567888999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 68 ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 68 ~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
..+..+.+.|+++.+ +.+||+++|++. +...+|++++|+
T Consensus 321 ~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~~~~l~ 359 (371)
T 3auy_A 321 NRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCEEEEEE
Confidence 999999999998753 468999999963 678999999997
No 77
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.42 E-value=6.3e-15 Score=156.84 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=81.1
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHH--HHhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHh
Q 009738 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIE--ILTQPTV----LLLDE-PTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~--l~~~p~l----lllDE-PtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+.++++.+||++..+ +.+|||||||||++|++ |+.+|++ ||||| ||+|||+. ...+.+.+++
T Consensus 218 ~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--- 286 (460)
T 2npi_A 218 KQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--- 286 (460)
T ss_dssp BCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---
T ss_pred HHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---
Confidence 445566677766554 34699999999999999 9999999 99999 99999999 4444444443
Q ss_pred CCCEEEEEecCChh-----HHHhhcCe-----EEEEe-CCeEEEEeChhhH
Q 009738 83 DGRIVVCSIHQPSS-----HLFYLFDD-----LLLLS-NGETIYFGDAKMA 122 (527)
Q Consensus 83 ~~~tvi~~~H~~~~-----~i~~~~d~-----v~~l~-~G~~~~~G~~~~~ 122 (527)
.+.|+|+++|+..+ ++.+++|+ +++|+ +|+++ .|++++.
T Consensus 287 ~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 287 LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 37889999999651 56689999 99999 99999 8987654
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.39 E-value=3e-13 Score=125.93 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=66.1
Q ss_pred ccCCCCHHHHHHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec--CChhHHHhh
Q 009738 31 HLRGISSGEKKRLSISIE-----ILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVCSIH--QPSSHLFYL 101 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~-----l~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H--~~~~~i~~~ 101 (527)
++..||||||||++||++ ++.+|++++||| ||++||+..+..+.+.+++ .+.|+|+++| |+...+..+
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHH
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHH
Confidence 445799999999999996 999999999999 9999999999998888865 5677889987 456788888
Q ss_pred cCeEEEEeCCeEEE
Q 009738 102 FDDLLLLSNGETIY 115 (527)
Q Consensus 102 ~d~v~~l~~G~~~~ 115 (527)
+|+ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 988 5566654
No 79
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.34 E-value=2.6e-13 Score=125.27 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhCCCEEEEEecCChhH
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------------SAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~----------------~~~~i~~~l~~l~~~~~tvi~~~H~~~~~ 97 (527)
..|||||||++||++++.+|++++|||||+|||+. .+.++.+.|++++++|.|+|+++|++. +
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~-~ 161 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE-E 161 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH-H
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH-H
Confidence 36999999999999999999999999999999999 668999999999888999999999963 4
Q ss_pred HH
Q 009738 98 LF 99 (527)
Q Consensus 98 i~ 99 (527)
+.
T Consensus 162 ~~ 163 (171)
T 4gp7_A 162 VE 163 (171)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 80
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.32 E-value=3.3e-12 Score=135.09 Aligned_cols=75 Identities=16% Similarity=0.160 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEE
Q 009738 33 RGISSGEKKRLSISIEIL----TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l 108 (527)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+++.++|+++|++ .....+|+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999876688999999994 467789999998
Q ss_pred e
Q 009738 109 S 109 (527)
Q Consensus 109 ~ 109 (527)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 81
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.13 E-value=1.9e-12 Score=123.45 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 38 GEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 38 Ger~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
|||||++||++|+.+|++|||||||+| ++..+.+.|+++ ++|+||| ++|++.
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999999999999999999999999999 899999999998 6789999 999964
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.12 E-value=3.4e-11 Score=130.53 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=74.7
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHHHHHHHHHHHHhCCCEEEEEecCCh---------h
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA-----SAFFVIQVLKCIALDGRIVVCSIHQPS---------S 96 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~-----~~~~i~~~l~~l~~~~~tvi~~~H~~~---------~ 96 (527)
.+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+++.|.|+|+++|+.. .
T Consensus 350 ~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~ 428 (525)
T 1tf7_A 350 YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS 428 (525)
T ss_dssp CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc
Confidence 45679999999999999999999999999 99999999 999999999999989999999999961 4
Q ss_pred HHHhhcCeEEEEeCCe
Q 009738 97 HLFYLFDDLLLLSNGE 112 (527)
Q Consensus 97 ~i~~~~d~v~~l~~G~ 112 (527)
.+.+++|++++|++|+
T Consensus 429 ~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 429 HISTITDTIILLQYVE 444 (525)
T ss_dssp CCTTTCSEEEEEEEEE
T ss_pred ccceeeeEEEEEEEEE
Confidence 6788999999999887
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.95 E-value=4.9e-11 Score=124.89 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHH--HHHHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHH
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSG--EKKRLSISIEILT----------QPTVLLLDEPTSGLDSASAFFVIQ 75 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgG--er~Rl~ia~~l~~----------~p~llllDEPtsgLD~~~~~~i~~ 75 (527)
+++++.++.++|.+.... . . +||| ||||+.||++|+. +|++++|||||+|||+.++.++.+
T Consensus 135 ~~~~~~L~~~~L~~~~~~-~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~ 207 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFF-I-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 207 (413)
T ss_dssp CCHHHHHHHTTGGGCSEE-E-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHcCCCccCCe-E-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHH
Confidence 357889999998765322 1 2 8999 9999999999999 999999999999999999999999
Q ss_pred HHHHHH-----hCC----CEEEEEecCChh-HHHhhcCeEE-EEeCC
Q 009738 76 VLKCIA-----LDG----RIVVCSIHQPSS-HLFYLFDDLL-LLSNG 111 (527)
Q Consensus 76 ~l~~l~-----~~~----~tvi~~~H~~~~-~i~~~~d~v~-~l~~G 111 (527)
.|+++. +.| .++++++|+... .+.+++|++. .|.+|
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 999985 322 678889998643 3777777664 34443
No 84
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.92 E-value=9e-10 Score=125.96 Aligned_cols=91 Identities=18% Similarity=0.237 Sum_probs=76.8
Q ss_pred ccCCCCHHHHHHHHHHHHH--HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHhC-CCEEEEEecCChhHHHhhcCeEE
Q 009738 31 HLRGISSGEKKRLSISIEI--LTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLL 106 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l--~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~ 106 (527)
..+++|+|++++..+++++ +.+|+++||||||+|+|+.....+ ...++.++++ |.++|++||+. ++..++|++.
T Consensus 718 l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~ 795 (934)
T 3thx_A 718 QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIP 795 (934)
T ss_dssp -----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCT
T ss_pred HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccc
Confidence 3467999999999999999 999999999999999999999888 6777888874 89999999994 5778999999
Q ss_pred EEeCCeEEEEeChhhHH
Q 009738 107 LLSNGETIYFGDAKMAV 123 (527)
Q Consensus 107 ~l~~G~~~~~G~~~~~~ 123 (527)
.+.+|++...++.+++.
T Consensus 796 ~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 796 TVNNLHVTALTTEETLT 812 (934)
T ss_dssp TEEEEEEEEEEETTEEE
T ss_pred eeEeeEEEEEecCCcEE
Confidence 99999999988876643
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.89 E-value=3.1e-09 Score=106.30 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCCHHH-HHHHHHHHHHHhCCCEEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhC-CCEEEEEecCCh-h------
Q 009738 33 RGISSGE-KKRLSISIEILTQPTVLLLDEPTS---G---LDS-ASAFFVIQVLKCIALD-GRIVVCSIHQPS-S------ 96 (527)
Q Consensus 33 ~~lSgGe-r~Rl~ia~~l~~~p~llllDEPts---g---LD~-~~~~~i~~~l~~l~~~-~~tvi~~~H~~~-~------ 96 (527)
.++|.+| +||+. ++++..+|+++++||||+ + +|. ....++++.|++++++ |.+||+++|+.. .
T Consensus 128 ~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 128 AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE 206 (296)
T ss_dssp CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------
T ss_pred CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccc
Confidence 3588998 66666 999999999999999999 5 565 6778899999999875 999999999952 3
Q ss_pred --------------HHHhhcCeEEEEeCCeE
Q 009738 97 --------------HLFYLFDDLLLLSNGET 113 (527)
Q Consensus 97 --------------~i~~~~d~v~~l~~G~~ 113 (527)
.+.+.||++++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 68889999999999875
No 86
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.63 E-value=3.3e-08 Score=114.43 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHhC-CCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASA-FFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~-~~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.+|+|++ ++++|++++++|+++|||||++|+|+... ..+.+.|+.++++ |.++|+++|+. +.+...+|++.++ +|
T Consensus 851 tf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 851 TFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LG 927 (1022)
T ss_dssp HHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EE
T ss_pred hhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cC
Confidence 4666655 59999999999999999999999999985 5578999999876 89999999995 5677789998886 58
Q ss_pred eEE--EEeCh
Q 009738 112 ETI--YFGDA 119 (527)
Q Consensus 112 ~~~--~~G~~ 119 (527)
++. +.|++
T Consensus 928 ~~~~~~~~~~ 937 (1022)
T 2o8b_B 928 HMACMVENEC 937 (1022)
T ss_dssp EEEEC-----
T ss_pred eEEEEEecCc
Confidence 877 44544
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.62 E-value=3.8e-10 Score=107.07 Aligned_cols=89 Identities=12% Similarity=-0.005 Sum_probs=69.0
Q ss_pred HHHHHHHHHH------HHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCC----CHHHHHHH
Q 009738 4 DEINDIVEET------IIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGL----DSASAFFV 73 (527)
Q Consensus 4 ~~~~~~v~~~------l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgL----D~~~~~~i 73 (527)
++.++++++. ++.+|+.+.++... +.|| +|+.+|++++|||||+|+ |+..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l 166 (207)
T 1znw_A 103 QPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRL 166 (207)
T ss_dssp HHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3444555555 55556655554433 3466 889999999999999998 78899999
Q ss_pred HHHHHHHHh-CCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 74 IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 74 ~~~l~~l~~-~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
.+.++++++ +|.|+|+++|+. +++..+||++++|.
T Consensus 167 ~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 167 DTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 999999985 589999999995 68999999999985
No 88
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.62 E-value=5e-09 Score=106.78 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 37 SGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 37 gGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
|||+||++||++|..+|+++++||||+ .++.+.|+.+...+.|+++++|+++ ....+||+++|.+|+
T Consensus 225 gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 899999999999999999999999998 2456778777655568999999975 678899999998875
No 89
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.61 E-value=3.1e-08 Score=113.00 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=60.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCChhHHHhhcCeE
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVI-QVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDL 105 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~-~~~tvi~~~H~~~~~i~~~~d~v 105 (527)
...+|+||+|++.|+++ +.+|+++||||||+|||+.....+. ..++.+++ .|.++|+++|++ ++.+++|+.
T Consensus 733 ~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp -CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 34689999999999998 8999999999999999999999997 78888876 589999999995 456666654
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.56 E-value=8.8e-08 Score=91.17 Aligned_cols=78 Identities=12% Similarity=-0.019 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCC--CHHHHHHHHHHHHHHHh-CCCEEEEEecCCh-------hHHHhh
Q 009738 34 GISSGEKKRLSISIEILTQPT--VLLLDEPTSGL--DSASAFFVIQVLKCIAL-DGRIVVCSIHQPS-------SHLFYL 101 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgL--D~~~~~~i~~~l~~l~~-~~~tvi~~~H~~~-------~~i~~~ 101 (527)
..|.+++++...+.....+|+ ++++||||+++ |+....++++.|+++++ .|.+||+++|+.. ..+.++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 358999988888888888999 99999999887 99999999999999976 4899999999962 348889
Q ss_pred cCeEEEEeCC
Q 009738 102 FDDLLLLSNG 111 (527)
Q Consensus 102 ~d~v~~l~~G 111 (527)
+|++++|++.
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999864
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.51 E-value=8.5e-10 Score=110.92 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..|||||||| ||+++.+|+||| |++||+.+...+.. .+|++. ..+.+|++ +|++|+
T Consensus 199 ~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~ 254 (305)
T 2v9p_A 199 YPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGE 254 (305)
T ss_dssp CCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---
T ss_pred cCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCE
Confidence 4699999999 999999999999 99999999888752 167754 46789999 999999
Q ss_pred EEEEeChhhHHHHHhh
Q 009738 113 TIYFGDAKMAVKFFAE 128 (527)
Q Consensus 113 ~~~~G~~~~~~~~f~~ 128 (527)
+++.|+.++...+|.+
T Consensus 255 iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 255 QPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCCCHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHH
Confidence 9999999887555543
No 92
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.51 E-value=1.3e-07 Score=93.68 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=60.4
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC--CCCHHHH---HHHHHHHHHHHh-C
Q 009738 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTS--GLDSASA---FFVIQVLKCIAL-D 83 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPts--gLD~~~~---~~i~~~l~~l~~-~ 83 (527)
++++++.+++.+..+.. +..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++++ .
T Consensus 99 ~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 99 RQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp HHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 34456777776655443 456999998876 68888999999999999 9998544 888899999875 5
Q ss_pred CCEEEEEecCCh
Q 009738 84 GRIVVCSIHQPS 95 (527)
Q Consensus 84 ~~tvi~~~H~~~ 95 (527)
|.|||+++|+..
T Consensus 171 g~tvi~i~H~~~ 182 (279)
T 1nlf_A 171 GCSIVFLHHASK 182 (279)
T ss_dssp CCEEEEEEEC--
T ss_pred CCEEEEEecCCC
Confidence 999999999853
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.43 E-value=1.5e-07 Score=90.76 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHHHhCCCEEEEEecCChhHH---------Hhh
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLD-----SASAFFVIQVLKCIALDGRIVVCSIHQPSSHL---------FYL 101 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEPtsgLD-----~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i---------~~~ 101 (527)
+.++..+......-..+|+++++||||++|| +..+..+.+.++.++++|.|||+++|+.. ++ ..+
T Consensus 119 ~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEF 197 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGG
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhE
Confidence 3444444444444468999999999999998 67777799999999888999999999965 44 678
Q ss_pred c-CeEEEEe
Q 009738 102 F-DDLLLLS 109 (527)
Q Consensus 102 ~-d~v~~l~ 109 (527)
| |++++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 8 9999996
No 94
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.37 E-value=9.5e-07 Score=83.41 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=61.7
Q ss_pred CCCHHH--HHHHHHHHHHHhC-CCEEEEeCCCCCCCHHH--------HHHHHHHHHHHHhC-CCEEEEEecCChh-----
Q 009738 34 GISSGE--KKRLSISIEILTQ-PTVLLLDEPTSGLDSAS--------AFFVIQVLKCIALD-GRIVVCSIHQPSS----- 96 (527)
Q Consensus 34 ~lSgGe--r~Rl~ia~~l~~~-p~llllDEPtsgLD~~~--------~~~i~~~l~~l~~~-~~tvi~~~H~~~~----- 96 (527)
..++++ ++++..+++++.+ |+++++||||+++|+.. ..++++.|++++++ |.++|+++|....
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 356664 5678888899886 99999999999999743 35566778888765 8899999997542
Q ss_pred -------HHHhhcCeEEEEeCC
Q 009738 97 -------HLFYLFDDLLLLSNG 111 (527)
Q Consensus 97 -------~i~~~~d~v~~l~~G 111 (527)
.+.+.+|++++|++.
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 578899999999865
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.30 E-value=1.1e-07 Score=102.77 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=59.8
Q ss_pred HHHHHHHHHH-hCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH--------HHhhcCeEE
Q 009738 41 KRLSISIEIL-TQPTVLLLDEPTS-----GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH--------LFYLFDDLL 106 (527)
Q Consensus 41 ~Rl~ia~~l~-~~p~llllDEPts-----gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~--------i~~~~d~v~ 106 (527)
++-.+..+|. .+|+++++||||+ +||+..+.++.+++++++++|.|+|+++|++... ...+||+++
T Consensus 126 ~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi 205 (525)
T 1tf7_A 126 LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV 205 (525)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence 3445556664 6899999999998 5699999999999999998899999999997542 456699999
Q ss_pred EEeCCe
Q 009738 107 LLSNGE 112 (527)
Q Consensus 107 ~l~~G~ 112 (527)
+|++|+
T Consensus 206 ~L~~~~ 211 (525)
T 1tf7_A 206 ILRNVL 211 (525)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999843
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.28 E-value=1.5e-07 Score=94.60 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=56.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCh--------hHHHh
Q 009738 32 LRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFY 100 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~~--------~~i~~ 100 (527)
+++|| |||++||++++.+|+ +|+|| ||+|||+.++ ++++.+ .|.|+|+++|.+. +.+..
T Consensus 202 ~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~ 271 (302)
T 3b9q_A 202 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEE 271 (302)
T ss_dssp HHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHH
Confidence 34588 999999999999999 99999 9999998865 345554 5899999999432 23445
Q ss_pred hcCeEEEEeCCeE
Q 009738 101 LFDDLLLLSNGET 113 (527)
Q Consensus 101 ~~d~v~~l~~G~~ 113 (527)
..+.+.++..|+.
T Consensus 272 ~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 272 LGIPVKFIGVGEA 284 (302)
T ss_dssp HCCCEEEEECSSS
T ss_pred HCCCEEEEeCCCC
Confidence 5678888888864
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.16 E-value=1e-06 Score=98.99 Aligned_cols=66 Identities=24% Similarity=0.189 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHHHHHHH--HhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHhCCCEEEEEecCChhHHHhhc
Q 009738 32 LRGISSGEKKRLSISIEI--LTQPTVLLLDEP---TSGLDSASA-FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l--~~~p~llllDEP---tsgLD~~~~-~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~ 102 (527)
..++|+|+++++.+++++ +.+|+++||||| |++||..+. ..+.+.|++ .|.++|+++|+. +...++
T Consensus 633 ~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 633 AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp --CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC
T ss_pred HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh
Confidence 357899999999999999 999999999999 999998875 467777765 588999999994 344554
No 98
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.15 E-value=2e-07 Score=92.24 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..||||||||+++||+++. ++++|||+.|||+.. .+.++.+++. .++|+++|.
T Consensus 97 ~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 97 EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 3699999999999999875 999999999999987 5566667666 889999887
No 99
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.12 E-value=1.9e-06 Score=81.89 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCcccccccccC-cccCCCCHHHHH-HHHHHHHHHh-------CCCEEEEeCCCCCCCHHH---------
Q 009738 8 DIVEETIIKMGLQACAETKIGN-WHLRGISSGEKK-RLSISIEILT-------QPTVLLLDEPTSGLDSAS--------- 69 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~-~~~~~lSgGer~-Rl~ia~~l~~-------~p~llllDEPtsgLD~~~--------- 69 (527)
+++..+.+..++... +...+ ......++++++ ++..+.+++. +|+++++||||+++|+..
T Consensus 74 ~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r 151 (231)
T 4a74_A 74 ERIREIAQNRGLDPD--EVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAER 151 (231)
T ss_dssp HHHHHHHHHTTSCHH--HHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHH
T ss_pred HHHHHHHHHcCCCHH--HHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHH
Confidence 345666677776432 11111 012234555544 4677777777 999999999999999841
Q ss_pred ---HHHHHHHHHHHHhC-CCEEEEEecCCh---hHHHhhcCeEEEEeCCe
Q 009738 70 ---AFFVIQVLKCIALD-GRIVVCSIHQPS---SHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 70 ---~~~i~~~l~~l~~~-~~tvi~~~H~~~---~~i~~~~d~v~~l~~G~ 112 (527)
..++++.|++++++ |.|||+++|... ..+.+.+|++++|++|+
T Consensus 152 ~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 152 QQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 23788888888754 999999999532 24788999999998764
No 100
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.11 E-value=1.3e-06 Score=98.79 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFV-IQVLKCIAL-DGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~-~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.+|+|++ ++..+...+.+|+++|||||++|+|+.....+ .+.++.+++ .|.++|+++|++ ++..++|++..+.+|
T Consensus 669 tf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~ 745 (800)
T 1wb9_A 669 TFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANV 745 (800)
T ss_dssp -CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEE
T ss_pred hhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEE
Confidence 4566665 45555567899999999999999999888776 788999988 499999999996 356789988888888
Q ss_pred eEEEEeCh
Q 009738 112 ETIYFGDA 119 (527)
Q Consensus 112 ~~~~~G~~ 119 (527)
++......
T Consensus 746 ~~~~~~~~ 753 (800)
T 1wb9_A 746 HLDALEHG 753 (800)
T ss_dssp EEEEEEET
T ss_pred EEEEEEcC
Confidence 88766543
No 101
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.10 E-value=8.7e-08 Score=98.19 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=68.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCC-----EEEEEecCChhHHHhhcCe
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL--DGR-----IVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~~~-----tvi~~~H~~~~~i~~~~d~ 104 (527)
+..+|+|| ||+++| +.+|++ |+|||+....++.+.++++.+ +|. ||++++|+.. ..+||+
T Consensus 169 ~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~ 235 (347)
T 2obl_A 169 VTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDE 235 (347)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHH
T ss_pred HHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhh
Confidence 45699999 899999 688877 999999999999999999975 477 8999999975 567999
Q ss_pred EEEEeCCeEEEEeChhhH
Q 009738 105 LLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 105 v~~l~~G~~~~~G~~~~~ 122 (527)
++++.+|+++..|+..+.
T Consensus 236 v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHCSEEEEBCHHHHTT
T ss_pred eEEeeCcEEEEeCCHHHc
Confidence 999999999999887754
No 102
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.08 E-value=1.4e-06 Score=89.44 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=56.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCh--------hHHHh
Q 009738 32 LRGISSGEKKRLSISIEILTQPT--VLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPS--------SHLFY 100 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~~--------~~i~~ 100 (527)
+.+|| |||+.||++++.+|+ +|+|| ||+|||+.++. +++.+ .|.|+|+++|.+. +.+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~ 328 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEE 328 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHH
Confidence 34588 999999999999999 99999 99999988653 45554 4899999999531 23445
Q ss_pred hcCeEEEEeCCeE
Q 009738 101 LFDDLLLLSNGET 113 (527)
Q Consensus 101 ~~d~v~~l~~G~~ 113 (527)
..+.|.++..|+.
T Consensus 329 ~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 329 LGIPVKFIGVGEA 341 (359)
T ss_dssp HCCCEEEEECSSS
T ss_pred hCCCEEEEeCCCC
Confidence 5678888888864
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.02 E-value=2.6e-08 Score=100.60 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~ 67 (527)
.+++.+.++.++ ....+..+ ..|||||+||+++|++++.+|+|||+|||+..+|+
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 456778888887 44444444 35999999999999999999999999999999986
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.01 E-value=2.3e-06 Score=87.69 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHH-------hCCCEEEEeCCCCCCCHHH------------HHHHHHHHHHHHhC-CCEEEEEecCCh
Q 009738 36 SSGEKKRLSISIEIL-------TQPTVLLLDEPTSGLDSAS------------AFFVIQVLKCIALD-GRIVVCSIHQPS 95 (527)
Q Consensus 36 SgGer~Rl~ia~~l~-------~~p~llllDEPtsgLD~~~------------~~~i~~~l~~l~~~-~~tvi~~~H~~~ 95 (527)
|.++++++.++++++ .+|+++++||||+++|+.. ..++++.|++++++ |.|||+++|...
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 688999999999999 6899999999999999852 45667777777664 899999999853
Q ss_pred hHHHhhcCeEEEEeCCeEEEEeC
Q 009738 96 SHLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 96 ~~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
.....++.......|+++.++.
T Consensus 288 -~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 288 -RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp ---------------CCCCCTTC
T ss_pred -ccccccCCccccCCcceEeecC
Confidence 4444455566666777665443
No 105
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.98 E-value=2.5e-07 Score=97.76 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=68.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---C-CC-----EEEEEecCChhHHHhhc
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL---D-GR-----IVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~-~~-----tvi~~~H~~~~~i~~~~ 102 (527)
...+|+|| ||++|| +.+|++ |+|||+.....+.+.++++.+ + |. ||++++|+.. ..++
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 34689999 999999 889988 999999999999999999876 3 64 8999999975 5779
Q ss_pred CeEEEEeCCeEEEEeChhhH
Q 009738 103 DDLLLLSNGETIYFGDAKMA 122 (527)
Q Consensus 103 d~v~~l~~G~~~~~G~~~~~ 122 (527)
|++++|.+|+++..|++.+.
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHT
T ss_pred ceEEEEeCcEEEEeCCHHHc
Confidence 99999999999999887654
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.91 E-value=9.8e-06 Score=75.76 Aligned_cols=73 Identities=18% Similarity=0.043 Sum_probs=56.1
Q ss_pred HHHHHHHHcCCccc-ccccccCcccCCCCHHHHHH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 009738 9 IVEETIIKMGLQAC-AETKIGNWHLRGISSGEKKR-LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI 86 (527)
Q Consensus 9 ~v~~~l~~l~L~~~-~~~~i~~~~~~~lSgGer~R-l~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t 86 (527)
++.+.++..++... ..+++ ..+|+||||| +..+++++.+|+++++|||||++|..+..++.+.|.++..+|.+
T Consensus 128 ~~~~~~~~~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 45556666666432 13333 4589999999 89999999999999999999999999999999999998776543
No 107
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.90 E-value=5.9e-06 Score=81.14 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 41 KRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 41 ~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
-|++|+++|..+|+++++|||| |+.+...++ +. ++.|.+|++++|++. +...+||++.|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 3899999999999999999999 988866543 33 456899999999964 6788999988854
No 108
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.90 E-value=6.8e-08 Score=92.35 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHH-----HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 34 GISSGEKKRLSI-----SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 34 ~lSgGer~Rl~i-----a~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
++|||||||+++ +++++.+|++++|||||+++|..+...+.+.++++.++
T Consensus 122 ~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 122 NINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp CHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 589999999999 89999999999999999999999999999998887553
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=7.1e-08 Score=91.09 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcCCcccccccccCcccCCCCHHHH----HHHHHHHHHHhCCCEEEEeCCCCC-------CCHHHHHHHHH
Q 009738 7 NDIVEETIIKMGLQACAETKIGNWHLRGISSGEK----KRLSISIEILTQPTVLLLDEPTSG-------LDSASAFFVIQ 75 (527)
Q Consensus 7 ~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer----~Rl~ia~~l~~~p~llllDEPtsg-------LD~~~~~~i~~ 75 (527)
.+++.+.++.+++.+..+.+. ..+|+||+ ||++++++++.+|.++++||||++ ||+....++.+
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 356777888888876665544 35899974 688999999999999999999999 99999999999
Q ss_pred HHHHH-HhCCCEEEEEecCC
Q 009738 76 VLKCI-ALDGRIVVCSIHQP 94 (527)
Q Consensus 76 ~l~~l-~~~~~tvi~~~H~~ 94 (527)
.+++. .+.|.|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 99886 45688988888874
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=1.7e-05 Score=72.73 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=44.9
Q ss_pred HHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH
Q 009738 47 IEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH 97 (527)
Q Consensus 47 ~~l~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~ 97 (527)
...+.+|++|++|||++ ++|+..+..+.+.+.+..++|+++|+++|.+.++
T Consensus 95 ~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 34466999999999995 9999999999999999888899999999998654
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.72 E-value=9.9e-07 Score=82.44 Aligned_cols=78 Identities=9% Similarity=0.033 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHH-HHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCCEEEE---Ee-cCChhHHHhhc
Q 009738 33 RGISSGEKKRLS-ISI---EILTQPTVLLLDE--PTSGLDSASAFFVIQVLKCIALDGRIVVC---SI-HQPSSHLFYLF 102 (527)
Q Consensus 33 ~~lSgGer~Rl~-ia~---~l~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~~~tvi~---~~-H~~~~~i~~~~ 102 (527)
.++|+|||+++. +.+ |++.+|+++++|| |+..+|...... |+++.++..++|+ +. |+.+ ..+.
T Consensus 82 ~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~----l~~~l~~~~~~ilgti~vsh~~~---~~~v 154 (189)
T 2i3b_A 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA----VRQTLSTPGTIILGTIPVPKGKP---LALV 154 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH----HHHHHHCSSCCEEEECCCCCSSC---CTTH
T ss_pred EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH----HHHHHhCCCcEEEEEeecCCCCc---hHHH
Confidence 469999998884 444 5789999999999 898899875444 4444444455553 32 7742 3456
Q ss_pred CeEEEEeCCeEEEEe
Q 009738 103 DDLLLLSNGETIYFG 117 (527)
Q Consensus 103 d~v~~l~~G~~~~~G 117 (527)
|++..+.+|+++...
T Consensus 155 d~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 155 EEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHTTCCSEEEECC
T ss_pred HHHeecCCcEEEEeC
Confidence 777777888887643
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.61 E-value=1.7e-05 Score=81.45 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 44 SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 44 ~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
+|+++|..+|++|++|||| |..+ .+.+.+++..|.++++|+|+.+ .+ ..+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLET----IRLALTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 9999999999999999999 6554 4445556778999999999975 34 789999988654
No 113
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.36 E-value=8.2e-06 Score=81.80 Aligned_cols=57 Identities=14% Similarity=0.107 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCh
Q 009738 31 HLRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALD-GRIVVCSIHQPS 95 (527)
Q Consensus 31 ~~~~lSgGer~Rl~ia~~l~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~ 95 (527)
+.+++|||||||+.+|++++ ++++||||+ |||+... +.++++.++ +.++|++.||..
T Consensus 110 ~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 110 YLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 34579999999998888775 999999998 5999873 566666654 678888899853
No 114
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.35 E-value=0.00036 Score=66.49 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCCHHHHHH-HHHHHHHH--hCCCEEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhC-CCEEEEEecCChhH
Q 009738 34 GISSGEKKR-LSISIEIL--TQPTVLLLDEPTSGLDSA-------S-----AFFVIQVLKCIALD-GRIVVCSIHQPSSH 97 (527)
Q Consensus 34 ~lSgGer~R-l~ia~~l~--~~p~llllDEPtsgLD~~-------~-----~~~i~~~l~~l~~~-~~tvi~~~H~~~~~ 97 (527)
..++.+... +.-..+++ .+|+++++|||++.+|+. . ..++++.|++++++ |.|||+++|.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 356665443 33344444 489999999999999985 3 34566677777665 89999999964321
Q ss_pred ------------------HHhhcCeEEEEeCCe
Q 009738 98 ------------------LFYLFDDLLLLSNGE 112 (527)
Q Consensus 98 ------------------i~~~~d~v~~l~~G~ 112 (527)
+.+++|.+++|++|+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -------------------CCTTCEEEEEEECS
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 333899999998653
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00018 Score=64.15 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE-EEEEecCChhHH
Q 009738 48 EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRI-VVCSIHQPSSHL 98 (527)
Q Consensus 48 ~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~t-vi~~~H~~~~~i 98 (527)
+++.+|++|++|||++ +|...+..+.+.+.++.++|++ +|+++|.+..++
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHc
Confidence 4467899999999998 6655588999999999888887 899999765433
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.12 E-value=2e-06 Score=79.56 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-ChhHHHhhcCeEEEE
Q 009738 36 SSGEKKRLSISI------EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ-PSSHLFYLFDDLLLL 108 (527)
Q Consensus 36 SgGer~Rl~ia~------~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~-~~~~i~~~~d~v~~l 108 (527)
|+|+++++.++. +++.+|+...+|+ |+|+..... .+.++++.+.+.++|.++|+ + +++.+++|+|+
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~-~~~e~~~~~i~-- 168 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQP-TNLNDIVKNLK-- 168 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCG-GGHHHHHHHHH--
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCCh-hhHHHHHHHHh--
Confidence 888888888888 9999999888884 899988888 88888887677899999998 5 56889999999
Q ss_pred eCCeEEEEeChhh
Q 009738 109 SNGETIYFGDAKM 121 (527)
Q Consensus 109 ~~G~~~~~G~~~~ 121 (527)
++|+++..|+++-
T Consensus 169 ~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 169 TNPRFIFCMAGDP 181 (189)
T ss_dssp HCGGGSCC-----
T ss_pred hCCcEEEeecCCc
Confidence 9999999998763
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.09 E-value=3.4e-05 Score=74.66 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.+|++++|+.......+++++ ++|+
T Consensus 115 ~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 115 PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred ccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 4699999999988 5788899999999998888753 1222 37899999997433223334434 5564
Q ss_pred EEEEeChhhHHH
Q 009738 113 TIYFGDAKMAVK 124 (527)
Q Consensus 113 ~~~~G~~~~~~~ 124 (527)
+.+++.+
T Consensus 181 -----~~e~~~~ 187 (245)
T 2jeo_A 181 -----DLEQILT 187 (245)
T ss_dssp -----CHHHHHH
T ss_pred -----CHHHHHH
Confidence 4555544
No 118
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.97 E-value=0.0027 Score=67.09 Aligned_cols=79 Identities=11% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCCCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCC--------HHHHHHHHHHHHHHHhC-CCEEEEEec---------
Q 009738 33 RGISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLD--------SASAFFVIQVLKCIALD-GRIVVCSIH--------- 92 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~--~~p~llllDEPtsgLD--------~~~~~~i~~~l~~l~~~-~~tvi~~~H--------- 92 (527)
.++|.+|.+ +.++.+. .+|+++++|+++...+ .....++.+.|+.++++ |.+||+++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~ 371 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQ 371 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC-
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 358999987 5666666 6899999999998774 23446788888988865 889999998
Q ss_pred C--Ch-------hHHHhhcCeEEEEeCCeE
Q 009738 93 Q--PS-------SHLFYLFDDLLLLSNGET 113 (527)
Q Consensus 93 ~--~~-------~~i~~~~d~v~~l~~G~~ 113 (527)
+ |. ..+...+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 32 157888999999987764
No 119
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.89 E-value=0.0019 Score=67.18 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHhC-CCEEEEEecCCh---------
Q 009738 40 KKRLSISIEIL--TQPTVLLLDEPTSGLDSASA------------FFVIQVLKCIALD-GRIVVCSIHQPS--------- 95 (527)
Q Consensus 40 r~Rl~ia~~l~--~~p~llllDEPtsgLD~~~~------------~~i~~~l~~l~~~-~~tvi~~~H~~~--------- 95 (527)
++.+.-+..++ .+|+++++|||++.+|+... .++++.|++++++ |.|||+++|...
T Consensus 259 ~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~ 338 (400)
T 3lda_A 259 LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFN 338 (400)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----------
T ss_pred HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCcccccc
Confidence 33444444443 46999999999999996433 6788889999875 999999999811
Q ss_pred ---------hHHHhhcCeEEEEeCCe
Q 009738 96 ---------SHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 96 ---------~~i~~~~d~v~~l~~G~ 112 (527)
..+.+.+|.++.|++|+
T Consensus 339 g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 339 PDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---------CHHHHHCSEEEEEEECS
T ss_pred CCCccCCchhHHHHhcceEEEEEecC
Confidence 33578889999998764
No 120
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.00097 Score=67.47 Aligned_cols=55 Identities=7% Similarity=0.075 Sum_probs=41.8
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeE
Q 009738 49 ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDL 105 (527)
Q Consensus 49 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v 105 (527)
+..+|+++++|||++ ||+.++..+.+.+++.. ++.++|+++|++......+.+|+
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhc
Confidence 577999999999999 99999999999998854 36789999999764333444444
No 121
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.39 E-value=0.0018 Score=71.03 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=56.3
Q ss_pred HhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCh------hHHHhhc-----CeEEEEeC
Q 009738 50 LTQPTVLLLDEP------TSGLDSASAFFVIQVLKCIALD--GRIVVCSIHQPS------SHLFYLF-----DDLLLLSN 110 (527)
Q Consensus 50 ~~~p~llllDEP------tsgLD~~~~~~i~~~l~~l~~~--~~tvi~~~H~~~------~~i~~~~-----d~v~~l~~ 110 (527)
..+|+++++||| |+|||+..+.++.++++++.++ +.++++++|+.. ..+.+.. ..++++.+
T Consensus 144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecc
Confidence 347999999999 9999999999999999997543 567788888743 1222222 35788899
Q ss_pred CeEEEEeChhhHHHHH
Q 009738 111 GETIYFGDAKMAVKFF 126 (527)
Q Consensus 111 G~~~~~G~~~~~~~~f 126 (527)
+..+..|+.+++.+..
T Consensus 224 ~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 224 PDLVDKGTEDKVVDVV 239 (608)
T ss_dssp GGGSSSSSTTCCCCCC
T ss_pred hhhcCcccHHHHHHHH
Confidence 9888888766554433
No 122
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.26 E-value=0.00031 Score=72.10 Aligned_cols=73 Identities=15% Similarity=-0.148 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHH-hCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCChhHHHhhc
Q 009738 34 GISSGEKKRLSISIEIL-TQPTVLLLDE---PT------SGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQPSSHLFYLF 102 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~-~~p~llllDE---Pt------sgLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~~~~i~~~~ 102 (527)
.+|+|+++|..+++++. .+|++++||| |+ .++|+..+..+.+.|+++.+ .|.++++++|. .+..+++
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~--~~~~r~~ 335 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP--SYLDRYN 335 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS--SHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CHHHHHH
Confidence 46778888888888775 5999999999 65 58999999999999999865 47888888865 2455565
Q ss_pred CeEEEE
Q 009738 103 DDLLLL 108 (527)
Q Consensus 103 d~v~~l 108 (527)
|++.++
T Consensus 336 ~~i~~i 341 (365)
T 1lw7_A 336 QVKAVI 341 (365)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 123
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.15 E-value=0.00068 Score=70.85 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHHHhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 35 ISSGEKKRLSISIEILTQPT---VLLLDEPT-SGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~---llllDEPt-sgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
++.++++|++||++++.+|+ ++++|||| .|||+... +.++++.. +.++|+++|.
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEc
Confidence 56778889999999999999 99999999 69998873 44555554 6777777776
No 124
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.12 E-value=0.002 Score=66.26 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEe
Q 009738 42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 42 Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~ 109 (527)
+.+|+.+|..+|+++++|||+ |+.+... .++. +..|.+++.|+|... +...+||++.|.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 579999999999999999999 7665443 3443 356889999999853 778888887664
No 125
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.11 E-value=0.0014 Score=65.52 Aligned_cols=56 Identities=16% Similarity=0.068 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCh
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPS 95 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~ 95 (527)
++..++||++|||+++.+|+.++| +||+.+..++++.++++.++ |.|+|+++|++.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 456679999999999999995444 45555556677777887765 899999999853
No 126
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.016 Score=54.84 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=45.3
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-hCCCEEEEEecCChhH-------HHhhcCeEEEEeC
Q 009738 51 TQPTVLLLDEPTSGL--DSASAFFVIQVLKCIA-LDGRIVVCSIHQPSSH-------LFYLFDDLLLLSN 110 (527)
Q Consensus 51 ~~p~llllDEPtsgL--D~~~~~~i~~~l~~l~-~~~~tvi~~~H~~~~~-------i~~~~d~v~~l~~ 110 (527)
.+|+++++|+|++.+ |+....+.+..+++++ +.|.+|++++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5689999999986532 5678899999974
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.00039 Score=63.62 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=47.9
Q ss_pred HHHHHHHH-cCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEE-------EEeCCCCC---CCHHHHHHHHHHH
Q 009738 9 IVEETIIK-MGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVL-------LLDEPTSG---LDSASAFFVIQVL 77 (527)
Q Consensus 9 ~v~~~l~~-l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~ll-------llDEPtsg---LD~~~~~~i~~~l 77 (527)
.+++.++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|..+ +|......+.+.+
T Consensus 84 ~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~~~~a~~i 156 (171)
T 2f1r_A 84 DLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFI 156 (171)
T ss_dssp CHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCHHHHHHHH
T ss_pred CHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccHHHHHHHH
Confidence 34555555 43 35788876 69999999999999999999873 23555322 3455667888888
Q ss_pred HHHHhCCC
Q 009738 78 KCIALDGR 85 (527)
Q Consensus 78 ~~l~~~~~ 85 (527)
.+...+|.
T Consensus 157 ~~~~~~~~ 164 (171)
T 2f1r_A 157 LSLLREGG 164 (171)
T ss_dssp HHHHTC--
T ss_pred HHHHhccC
Confidence 77666653
No 128
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.65 E-value=0.0024 Score=66.61 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=50.0
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCChhHHHhhcCeE
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI-ALDGRIVVCSIHQPSSHLFYLFDDL 105 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l-~~~~~tvi~~~H~~~~~i~~~~d~v 105 (527)
..++|+|++||+.++++|+.+|.++++ +++|...+ ...+.+++. .+.+.+++.++......+.++++.+
T Consensus 250 ~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 250 LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 346999999999999999999999999 99999877 445555444 4456666665544344555555443
No 129
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.59 E-value=0.0014 Score=66.00 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcC
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFD 103 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d 103 (527)
++|+||+||+..+++++.+|+++ ||| .++.+.++++. .+.+|++++|.+. +...++|
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 58999999998888888889887 888 67888888875 5789999999864 3444443
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.57 E-value=0.03 Score=56.89 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCCEEEEEecCChh-----
Q 009738 41 KRLSISIEILTQ--PTVLLLDEPTSGL----------DS---ASAFFVIQVLKCI----ALDGRIVVCSIHQPSS----- 96 (527)
Q Consensus 41 ~Rl~ia~~l~~~--p~llllDEPtsgL----------D~---~~~~~i~~~l~~l----~~~~~tvi~~~H~~~~----- 96 (527)
+-+.++++++.+ |+++++|||++.+ |+ ..+..+.+.++++ ++.|.+||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446678888765 9999999999998 33 2222444555554 3458999999986431
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEEeC
Q 009738 97 ----------HLFYLFDDLLLLSNGETIYFGD 118 (527)
Q Consensus 97 ----------~i~~~~d~v~~l~~G~~~~~G~ 118 (527)
.+.+.+|.++.+..++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2678899999998877665544
No 131
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.56 E-value=0.00068 Score=67.38 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.1
Q ss_pred cCCCCHHHHHHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 009738 32 LRGISSGEKKRLSIS--IEILTQPTVLLLDEPTSGLDSAS 69 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia--~~l~~~p~llllDEPtsgLD~~~ 69 (527)
-+.+||||+||+.+| +++ +|+|+|+|||++|+|+..
T Consensus 132 ~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 132 DKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 357999999999987 454 999999999999999853
No 132
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.49 E-value=0.00085 Score=64.58 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=39.4
Q ss_pred cCCCCHHHHHHHHHHHHH-HhCCCEEEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 009738 32 LRGISSGEKKRLSISIEI-LTQPTVLLLD----EPTSGLDSASAFFVIQVLKCIALDG 84 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l-~~~p~llllD----EPtsgLD~~~~~~i~~~l~~l~~~~ 84 (527)
+..+|| |+ +++ +.+|++++|| |||+|||..+...+.+.++++.+++
T Consensus 150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 345787 55 666 8999999999 9999999999999999999987663
No 133
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.37 E-value=0.016 Score=65.27 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=59.5
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEE-ecCChhHHHhhcCeEEEE
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCS-IHQPSSHLFYLFDDLLLL 108 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~~tvi~~-~H~~~~~i~~~~d~v~~l 108 (527)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.....+.+++++| ||++ ..+.+++++..++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~vi 265 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPLL 265 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCEE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCcc
Confidence 34579999999999999999999999999996 999888777777776655556777775 7764 5677778754333
No 134
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.16 E-value=0.0041 Score=66.46 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHH----------HHHHHHHhCCC-EEEEeCCCCCCCHHHHHH
Q 009738 4 DEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRL----------SISIEILTQPT-VLLLDEPTSGLDSASAFF 72 (527)
Q Consensus 4 ~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl----------~ia~~l~~~p~-llllDEPtsgLD~~~~~~ 72 (527)
+|+++|. +.+...|+.+..+.. ......+|+||+||. .+++++...|. ++++||++.-+|.. ...
T Consensus 241 ~EmerR~-~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~ 316 (512)
T 2ius_A 241 NEMERRY-KLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKK 316 (512)
T ss_dssp HHHHHHH-HHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHH
T ss_pred HHHHHHH-HHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHH
Confidence 3455553 677888876554321 001124788887652 34555667898 78999999988843 345
Q ss_pred HHHHHHHHHhC----CCEEEEEecCCh
Q 009738 73 VIQVLKCIALD----GRIVVCSIHQPS 95 (527)
Q Consensus 73 i~~~l~~l~~~----~~tvi~~~H~~~ 95 (527)
+.+.+.++++. |.++|+++|+|.
T Consensus 317 ~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 317 VEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 66666666543 668999999987
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.15 E-value=0.073 Score=56.36 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCCEEEEEecCCh
Q 009738 37 SGEKKRLSISIEILTQPTVLLLDEP----------TSGLDSASAFFVIQVLKCIA----LDGRIVVCSIHQPS 95 (527)
Q Consensus 37 gGer~Rl~ia~~l~~~p~llllDEP----------tsgLD~~~~~~i~~~l~~l~----~~~~tvi~~~H~~~ 95 (527)
|+++.|-.+..+....|.+||+||+ ++|.|......+.+++..+. ..+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888999999999999999999 44677776666677777664 24678899999873
No 136
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.76 E-value=0.085 Score=53.30 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 80 (527)
|+.++...+.......+++.+.++ | .||.++.+|+..|...+.++++++.|+|... ..++.+.++++
T Consensus 84 ms~~ql~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l 150 (338)
T 4a1f_A 84 MSAEQLALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKL 150 (338)
T ss_dssp SCHHHHHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHH
Confidence 345555555555555555554433 2 4999999999999999999999999998654 33666777777
Q ss_pred HhC--CCEEEEEe
Q 009738 81 ALD--GRIVVCSI 91 (527)
Q Consensus 81 ~~~--~~tvi~~~ 91 (527)
+++ |..+|++-
T Consensus 151 ~~~~gg~~lIVID 163 (338)
T 4a1f_A 151 KSQHKELGIAFID 163 (338)
T ss_dssp HHHCTTEEEEEEE
T ss_pred HHhcCCCCEEEEe
Confidence 654 45666653
No 137
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.93 E-value=0.37 Score=47.91 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCC
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPT 62 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPt 62 (527)
||+++++|+..|...+.++++++.|+|.
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~ 161 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG 161 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 7888888888877777666666666653
No 138
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.91 E-value=0.12 Score=48.82 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=47.0
Q ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCeEEEEeChhhHHHH
Q 009738 46 SIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGETIYFGDAKMAVKF 125 (527)
Q Consensus 46 a~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~~~~~G~~~~~~~~ 125 (527)
+.+++..++++||| ||+.++.++.+.+. ++.+|++++|++. ++.+ |+ +.+| .++++++...
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~----~~~tI~i~th~~~-~l~~---Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP----HARSIFILPPSKI-ELDR---RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT----TCEEEEEECSSHH-HHHH---HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc----CCEEEEEECCCHH-HHHH---HH--HHcC----CCCHHHHHHH
Confidence 45667789999999 99999999999876 5889999999964 4443 42 6677 4666666544
Q ss_pred H
Q 009738 126 F 126 (527)
Q Consensus 126 f 126 (527)
+
T Consensus 162 l 162 (219)
T 1s96_A 162 M 162 (219)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.57 E-value=0.00043 Score=71.73 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=57.1
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEecCChhHHHhhcCeEE-EEeCC-eEEEEeChh
Q 009738 52 QP--TVLLLDEPTSGLDSASAFFVIQVLKCI-ALDGRIVVCSIHQPSSHLFYLFDDLL-LLSNG-ETIYFGDAK 120 (527)
Q Consensus 52 ~p--~llllDEPtsgLD~~~~~~i~~~l~~l-~~~~~tvi~~~H~~~~~i~~~~d~v~-~l~~G-~~~~~G~~~ 120 (527)
+| +++++|||+.++|+....+.++.++.+ ++.|.|++ +|. ..++.++||++. +|.+| ++++.|+.+
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 78 999999999999999999999999998 66777754 888 467899999999 99999 888877654
No 140
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.44 E-value=0.017 Score=52.68 Aligned_cols=52 Identities=12% Similarity=-0.120 Sum_probs=38.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSI 91 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~ 91 (527)
+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.+...+..+|.++
T Consensus 107 ~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 107 LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECT
T ss_pred eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECC
Confidence 3469999999999999999999876 688877777777766543333344443
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.57 E-value=0.2 Score=49.81 Aligned_cols=59 Identities=8% Similarity=0.144 Sum_probs=42.5
Q ss_pred HHHHHHHcCCcccccccccCcccCCCCHHHHHHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 10 VEETIIKMGLQACAETKIGNWHLRGISSGEKKRL---SISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 10 v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl---~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
.....+..|+.. + ...|+|+.+++ ++++++..+|+++++|||.. ......+++.++++.
T Consensus 151 L~~~~~~~gl~~-----~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 151 LKIWGERVGATV-----I-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHTCEE-----E-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcE-----E-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 445566666642 1 24689999999 89999999999999999974 344556666666554
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=91.38 E-value=0.033 Score=58.40 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=50.6
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEE-EeCCeEEEEeChh
Q 009738 52 QPTVLLLDEPTSGLDS-ASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLL-LSNGETIYFGDAK 120 (527)
Q Consensus 52 ~p~llllDEPtsgLD~-~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~-l~~G~~~~~G~~~ 120 (527)
+|++|++||+..-.+. .++..+.+.+.++.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999877664 6778889999998888999999999876544333333332 3457666666654
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.14 E-value=0.52 Score=46.42 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHH
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEP-TSGLDSASAFFVIQVLKCI 80 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEP-tsgLD~~~~~~i~~~l~~l 80 (527)
+..+.+|..++.+...+++++++||| +.|+|.....++.+..+.+
T Consensus 164 ~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 164 SPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 44566788999888899999999999 9999988888887776655
No 144
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.86 E-value=0.24 Score=45.86 Aligned_cols=71 Identities=18% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHH--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 40 KKRLSISIEIL--TQPTVLLLDEPTS--GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 40 r~Rl~ia~~l~--~~p~llllDEPts--gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
++.+.-++..+ .+.++++|||.+. .++-....++.++|.+ +-++..||+|...+.+++.+++|-|.=|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 44567777778 5679999999976 3344445567777753 3357899999999999999999999988653
No 145
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=89.46 E-value=0.52 Score=49.81 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=49.8
Q ss_pred cCCCCHHHHHHHH--HHHHHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009738 32 LRGISSGEKKRLS--ISIEILT---------------QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (527)
Q Consensus 32 ~~~lSgGer~Rl~--ia~~l~~---------------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~ 94 (527)
..+.||||+|-.- |+.+++. .=.++++||. +-+|...+...++.++++ |.-+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 4579999999743 3444333 1147999999 999999999999999865 5445555422
Q ss_pred hhHHHhhcCeEEEEe
Q 009738 95 SSHLFYLFDDLLLLS 109 (527)
Q Consensus 95 ~~~i~~~~d~v~~l~ 109 (527)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 4556677777664
No 146
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.31 E-value=0.22 Score=50.57 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHH---Hh--CCCEEEEeCCC
Q 009738 34 GISSGEKKRLSISIEI---LT--QPTVLLLDEPT 62 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l---~~--~p~llllDEPt 62 (527)
.+|+||+||..++++| .. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3899999999999999 77 89999999997
No 147
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.55 E-value=0.22 Score=49.29 Aligned_cols=69 Identities=9% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCCEEEE-EecCChhHHHhhcCeEEEEeCCeEEE
Q 009738 42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA---LDGRIVVC-SIHQPSSHLFYLFDDLLLLSNGETIY 115 (527)
Q Consensus 42 Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~---~~~~tvi~-~~H~~~~~i~~~~d~v~~l~~G~~~~ 115 (527)
+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ ++|. ..++.+.++++..+..|.++.
T Consensus 174 ~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 174 QQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEE
Confidence 44444 45999999999 99999877655544444332 12334444 3676 457888888776666666665
No 148
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.17 E-value=0.11 Score=52.87 Aligned_cols=68 Identities=18% Similarity=0.093 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+++...|-.|+.++..+|+.+++||++. .++.+.|+.+...+.|++.++|..+ ....+||+..+..|.
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 4677889999999999999999999986 3455677777665668899999953 677889998887663
No 149
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.93 E-value=0.56 Score=47.36 Aligned_cols=60 Identities=10% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe--cCC
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSI--HQP 94 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~--H~~ 94 (527)
..+|+||+|++. +.+...++-++++| +|..|+|......+.+.+++... +..+|++. ||.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl 292 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDV 292 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTT
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECccc
Confidence 457999998876 55555677789999 99999999998888877776543 66777776 653
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.79 E-value=0.31 Score=44.22 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
|..-..+...+|++++.+|+++++| ||++|..+..++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333344578999999999999999 999999999999998875
No 151
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.25 E-value=1.1 Score=46.68 Aligned_cols=57 Identities=5% Similarity=0.025 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCCEEEEEecC
Q 009738 34 GISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC-IALDGRIVVCSIHQ 93 (527)
Q Consensus 34 ~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~-l~~~~~tvi~~~H~ 93 (527)
+++..+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 567666 7899999999999999999999999999999999986 88888888877654
No 152
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.01 E-value=0.53 Score=47.81 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHH
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEI 49 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l 49 (527)
++++..+.+.++++.+|+.+.+|.... ++| ||+||++||+++
T Consensus 287 ~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 287 EPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp CHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 345666778889999999877776654 599 999999999764
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.97 E-value=0.026 Score=52.27 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=41.3
Q ss_pred HH-HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 46 SI-EILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 46 a~-~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
++ +++.+|++++|||+|+++|..+...+.+.|++..++ +...|.+ ..+|.++++++
T Consensus 117 ~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 117 PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred cEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 44 567778888889999999999999999999887654 1233422 46899887653
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=81.91 E-value=3.1 Score=40.21 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCCEEEEEecCCh---hHH
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSA----------SAFFVIQVLKCIAL----DGRIVVCSIHQPS---SHL 98 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~----------~~~~i~~~l~~l~~----~~~tvi~~~H~~~---~~i 98 (527)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 567788888888888999999999998765532 22233444433321 2345777777652 234
Q ss_pred HhhcCeEEEE
Q 009738 99 FYLFDDLLLL 108 (527)
Q Consensus 99 ~~~~d~v~~l 108 (527)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456655443
No 155
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=76.97 E-value=4.9 Score=37.72 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CChhHHHhhcCeEEEEe
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H---------~~~~~i~~~~d~v~~l~ 109 (527)
+|+++++||--. |+. ++++.++.+++.|..||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 355666777778999999999 67788999999999874
No 156
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.95 E-value=11 Score=38.97 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHhC-CCEEEEEecCCh------
Q 009738 35 ISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLDS----------ASAFFVIQVLKCIALD-GRIVVCSIHQPS------ 95 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~--~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~~-~~tvi~~~H~~~------ 95 (527)
+|..+.+ +.++.+. .+|+++++|..+.=.+. ....++.+.|+.++++ +.+||+++|-..
T Consensus 293 ~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~ 370 (444)
T 2q6t_A 293 LTLMEVR--ARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARP 370 (444)
T ss_dssp CBHHHHH--HHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSS
T ss_pred CCHHHHH--HHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCC
Confidence 4444432 3344444 47999999998753322 1235677888888876 888888887321
Q ss_pred ------------hHHHhhcCeEEEEeC
Q 009738 96 ------------SHLFYLFDDLLLLSN 110 (527)
Q Consensus 96 ------------~~i~~~~d~v~~l~~ 110 (527)
..+...+|.++.|..
T Consensus 371 ~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 371 NKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCChHHhcchhHHHHhCCEEEEEec
Confidence 135667888888863
No 157
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=71.11 E-value=2.9 Score=37.79 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHhCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHhCCCEEEEEecCChhHHHhh
Q 009738 49 ILTQPTVLLLDEPTS-GLDSASAFFVI-QVLKCIALDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 49 l~~~p~llllDEPts-gLD~~~~~~i~-~~l~~l~~~~~tvi~~~H~~~~~i~~~ 101 (527)
.+.++++|++||+-. .++...+.++. ..+.....++..+|++++.+..++...
T Consensus 112 ~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 112 YIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred HhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 345788999999932 23333334344 355554456667777777766665543
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.00 E-value=5.8 Score=39.53 Aligned_cols=44 Identities=14% Similarity=-0.045 Sum_probs=35.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCCh
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL---DGRIVVCSIHQPS 95 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~~~tvi~~~H~~~ 95 (527)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5778889999863
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.99 E-value=0.0078 Score=58.68 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=47.5
Q ss_pred cccccccCcccCCCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHhCCCEEEEEe
Q 009738 22 CAETKIGNWHLRGISSGEKKRLSISIEILTQPTV--LLLDEPTSGLDSASA--------FFVIQVLKCIALDGRIVVCSI 91 (527)
Q Consensus 22 ~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~l--lllDEPtsgLD~~~~--------~~i~~~l~~l~~~~~tvi~~~ 91 (527)
..+..++....+ +|+| ||+.+++++..+|++ +++||.|+.+|...+ ..+.+...++..+|+|.+...
T Consensus 161 ~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a 237 (261)
T 2eyu_A 161 ILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDA 237 (261)
T ss_dssp HEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHH
T ss_pred HhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHH
Confidence 344455543333 6888 889999999999999 999999999998642 233444444455677765554
Q ss_pred cC
Q 009738 92 HQ 93 (527)
Q Consensus 92 H~ 93 (527)
|.
T Consensus 238 ~r 239 (261)
T 2eyu_A 238 ME 239 (261)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 160
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=70.64 E-value=4.7 Score=39.84 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=37.6
Q ss_pred HHHHHHHHHHH---hCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHhC-CCEEEEEecC
Q 009738 40 KKRLSISIEIL---TQPTVLLLDEPTSGLDS--------AS----AFFVIQVLKCIALD-GRIVVCSIHQ 93 (527)
Q Consensus 40 r~Rl~ia~~l~---~~p~llllDEPtsgLD~--------~~----~~~i~~~l~~l~~~-~~tvi~~~H~ 93 (527)
.+.+..++.++ .+|+++++|+.++-.+. .. ..++++.|++++++ |.+||++.|-
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677777787 57999999999975532 11 24556666776655 7888888764
No 161
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=70.27 E-value=0.051 Score=50.51 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 34 GISSGEKKRLSIS-IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 34 ~lSgGer~Rl~ia-~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
+.|+||+||++++ +.++.++.++++|||.. .++.+.--.++.+.+.....+.+...|. +..|.
T Consensus 111 ~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~ 174 (208)
T 3c8u_A 111 DIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL 174 (208)
T ss_dssp TEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC
T ss_pred cCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC
Confidence 4799999999987 77788888888888741 0112222356666666544466666662 34454
Q ss_pred EEEEeChhhHHHHH
Q 009738 113 TIYFGDAKMAVKFF 126 (527)
Q Consensus 113 ~~~~G~~~~~~~~f 126 (527)
+.+++.+.+
T Consensus 175 -----t~~~~~~~~ 183 (208)
T 3c8u_A 175 -----NHDAAVARA 183 (208)
T ss_dssp -----CHHHHHHHH
T ss_pred -----CHHHHHHHH
Confidence 455555443
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=69.89 E-value=3 Score=40.94 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=36.1
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 50 LTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 50 ~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
..+|++|++||+-. ..+...+..+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 46799999999865 234477888889998888888778888776544
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.78 E-value=3.7 Score=38.81 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009738 45 ISIEILTQPTVLLLDEPTSG-LDSASAFFVIQVLKCIALDGRIVVCSIH 92 (527)
Q Consensus 45 ia~~l~~~p~llllDEPtsg-LD~~~~~~i~~~l~~l~~~~~tvi~~~H 92 (527)
+..++..+|+++++||+-.- .+........+.+..+...|..++.|+|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 33445579999999997642 3322223333444445567888888887
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=68.08 E-value=3.2 Score=37.40 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 009738 42 RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIA 81 (527)
Q Consensus 42 Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 81 (527)
....|++++.+|++.++| ||++|.....++.+.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999 99999999999998887654
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=66.76 E-value=3.6 Score=41.68 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHH----HHH-HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 8 DIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSIS----IEI-LTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 8 ~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia----~~l-~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+.+.++++.+++.+..--.+++ ++.-+|+|+++|+.++ +++ ..+|++ +|+|++|......+.+.|.++..
T Consensus 279 ~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 279 QSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4466788888775543222232 2344788888888887 444 333444 89999999999999999988654
No 166
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.73 E-value=7.6 Score=38.73 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=36.6
Q ss_pred HHHHHHHHHH----hCCCEEEEeCCCCCCCHH------------HHHHHHHHHHHHHhC-CCEEEEEecC
Q 009738 41 KRLSISIEIL----TQPTVLLLDEPTSGLDSA------------SAFFVIQVLKCIALD-GRIVVCSIHQ 93 (527)
Q Consensus 41 ~Rl~ia~~l~----~~p~llllDEPtsgLD~~------------~~~~i~~~l~~l~~~-~~tvi~~~H~ 93 (527)
+.+..++.++ .+++++++|+.++-.+.. ...++++.|++++++ |.+||++.|-
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 4455566666 568999999999866432 134566667777765 7788888775
No 167
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=65.66 E-value=24 Score=35.38 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=46.0
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCCCHH-------------HHHHHHHHHHHH---Hh-CCCEEEEEecCChh-----
Q 009738 41 KRLSISIEIL--TQPTVLLLDEPTSGLDSA-------------SAFFVIQVLKCI---AL-DGRIVVCSIHQPSS----- 96 (527)
Q Consensus 41 ~Rl~ia~~l~--~~p~llllDEPtsgLD~~-------------~~~~i~~~l~~l---~~-~~~tvi~~~H~~~~----- 96 (527)
+-+.+++.++ .+++++++|+++.-.... .+..+.+.+++| ++ .+.+||++.|-...
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3455666664 579999999999866311 112334444444 33 48888888774221
Q ss_pred ----------HHHhhcCeEEEEeCCeEEEEe
Q 009738 97 ----------HLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 97 ----------~i~~~~d~v~~l~~G~~~~~G 117 (527)
.+...+|-++.+...+....|
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 356678888888766554333
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.10 E-value=0.44 Score=47.67 Aligned_cols=51 Identities=16% Similarity=-0.015 Sum_probs=36.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCChhHHHhhcCe
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~~i~~~~d~ 104 (527)
+..||+|+|||+.++ .+||+.+..++.+.|++.++. + +.|++ +.+..++++
T Consensus 160 ~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 160 SGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp GGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHT
T ss_pred cccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHh
Confidence 346999999998654 788999999999999988764 3 23553 445555543
No 169
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=64.80 E-value=21 Score=37.01 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=37.6
Q ss_pred CCC--EEEEeCCCC---CC---C-HHHHHHHHHHHHHHHhC-CCEEEEEecCChh------------------HHHhhcC
Q 009738 52 QPT--VLLLDEPTS---GL---D-SASAFFVIQVLKCIALD-GRIVVCSIHQPSS------------------HLFYLFD 103 (527)
Q Consensus 52 ~p~--llllDEPts---gL---D-~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~------------------~i~~~~d 103 (527)
+|+ +++.|--.. +- + .....++.+.|+.++++ |.+||+++|-... .+.+.+|
T Consensus 308 ~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD 387 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDAD 387 (444)
T ss_dssp CSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCS
T ss_pred CCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCC
Confidence 678 888885432 11 1 12334667778888776 8888888883221 3677788
Q ss_pred eEEEEeC
Q 009738 104 DLLLLSN 110 (527)
Q Consensus 104 ~v~~l~~ 110 (527)
-|+.|..
T Consensus 388 ~Vi~L~r 394 (444)
T 3bgw_A 388 IIEFLYR 394 (444)
T ss_dssp EEEECCB
T ss_pred EEEEEec
Confidence 8888753
No 170
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=64.13 E-value=12 Score=35.41 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------ChhHHHhhcCeEEEEe
Q 009738 49 ILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLS 109 (527)
Q Consensus 49 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~---------~~~~i~~~~d~v~~l~ 109 (527)
.+.+.+++++||----.| +.+.++.+++.|..||++-++ ++.++..++|.|.-|+
T Consensus 87 ~~~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 87 EALGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HHTTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred HhccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 347789999999876643 666666667789999999999 8999999999998874
No 171
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=64.11 E-value=2.7 Score=42.05 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 009738 33 RGISSGEKKRLSISIEILT------QPTVLLLDEPTSGLDSASAFFVIQVLKCIAL 82 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 82 (527)
+.+|+|++|++..+++++. +|++++ +|++|.....++.+.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999887 688877 999999999999999988654
No 172
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=63.85 E-value=0.011 Score=63.20 Aligned_cols=57 Identities=7% Similarity=0.038 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE--EecCChhHHHhhc
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVC--SIHQPSSHLFYLF 102 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~--~~H~~~~~i~~~~ 102 (527)
..+|+|||||+.++. + | |+|||+.+...+.+.|.++..+++|+++ ++|+. +++.+.+
T Consensus 399 ~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 399 MWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp EEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred EEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 357999998876641 1 7 9999998877777777777667888875 78884 4566555
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=61.80 E-value=0.016 Score=59.58 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHH---H-----HHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 35 ISSGEKKRLSISIEILTQPTV--LLLDEPTSGLDSAS---A-----FFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~l--lllDEPtsgLD~~~---~-----~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
.|+| ||++|++++..+|++ +++||.|+.||... . ..+.+...++..+|+|.+...|..+
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 4788 789999999999999 99999999999652 1 2234444444556888877777754
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=60.72 E-value=2 Score=46.67 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 009738 33 RGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKC 79 (527)
Q Consensus 33 ~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 79 (527)
.++|+|++|++..+.....++.+||+||... |++.....+.+.|++
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4689999999999999999999999999988 898888888777764
No 175
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=56.76 E-value=17 Score=35.97 Aligned_cols=45 Identities=4% Similarity=-0.126 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009738 43 LSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIAL-DGRIVVCSIHQP 94 (527)
Q Consensus 43 l~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~ 94 (527)
-.+++++..++.++.||.+|. .++++.++.+.+ .+.++|+++|.+
T Consensus 234 ~~i~ral~~de~llvLDa~t~-------~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 234 KKIARVTKPNLVIFVGDALAG-------NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHCCSEEEEEEEGGGT-------THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHhcCCCCEEEEecHHH-------HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 347788877777777775443 456666777764 488999999975
No 176
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=56.07 E-value=65 Score=32.23 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCCC----------------HHHHHHHHHHHHHHHhC-CCEEEEEecCC-------
Q 009738 41 KRLSISIEIL--TQPTVLLLDEPTSGLD----------------SASAFFVIQVLKCIALD-GRIVVCSIHQP------- 94 (527)
Q Consensus 41 ~Rl~ia~~l~--~~p~llllDEPtsgLD----------------~~~~~~i~~~l~~l~~~-~~tvi~~~H~~------- 94 (527)
+-+.+++.++ .+|+++++|+-++=.. .....++++.|+.++++ |.+||++.|--
T Consensus 126 ~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f 205 (356)
T 3hr8_A 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF 205 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS
T ss_pred HHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc
Confidence 3456666665 4699999998665443 11223455566677665 77888876651
Q ss_pred --------hhHHHhhcCeEEEEeCCeEEEEe
Q 009738 95 --------SSHLFYLFDDLLLLSNGETIYFG 117 (527)
Q Consensus 95 --------~~~i~~~~d~v~~l~~G~~~~~G 117 (527)
...+.+.+|-++.+..++.+..|
T Consensus 206 g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g 236 (356)
T 3hr8_A 206 GSPETTTGGLALKFYATMRMEVRRGEPIKEG 236 (356)
T ss_dssp CSCSSCTHHHHHHHHCSEEEEEEEEEEEEET
T ss_pred CCcccCCCcchhhhhCcEEEEEEeccccccC
Confidence 12256788999999864333333
No 177
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=55.73 E-value=8.4 Score=37.78 Aligned_cols=53 Identities=19% Similarity=0.086 Sum_probs=31.7
Q ss_pred HHhCCCEEEEeCCC-CCCCHHHHHHHHH-HHHHHHhCCCEEEEEecCChhHHHhh
Q 009738 49 ILTQPTVLLLDEPT-SGLDSASAFFVIQ-VLKCIALDGRIVVCSIHQPSSHLFYL 101 (527)
Q Consensus 49 l~~~p~llllDEPt-sgLD~~~~~~i~~-~l~~l~~~~~tvi~~~H~~~~~i~~~ 101 (527)
.+.++++|++||.- ..++...+..+.. ++.....+++.+|+|++.+..++...
T Consensus 211 ~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 211 AVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp HHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTT
T ss_pred HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 34678999999983 2344444444544 55554445677888888877666554
No 178
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=54.61 E-value=12 Score=34.90 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CChhHHHhhcCeEEEEe
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H---------~~~~~i~~~~d~v~~l~ 109 (527)
+.+++++||--- +|.. .++.+++++.+|..||++-+ .++.++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 478999999865 5533 33777888888999999999 78889999999998875
No 179
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=54.29 E-value=22 Score=32.27 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec---------CChhHHHhhcCeEEEEe
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH---------QPSSHLFYLFDDLLLLS 109 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H---------~~~~~i~~~~d~v~~l~ 109 (527)
+.+++++||--- +|+. .++.+++++.+|..||++-+ .++.++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999433 5533 36677888888999999988 66788999999997764
No 180
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=53.84 E-value=6.9 Score=37.18 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCC
Q 009738 2 TNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPT 54 (527)
Q Consensus 2 ~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~ 54 (527)
++....++++++-+.+|. +..++. ++++|||+.+++..|++|+..|+
T Consensus 47 s~~~~s~~i~~le~~lg~-~L~~R~-----~~~lsg~~~~lt~~g~~l~~~~~ 93 (265)
T 1b9m_A 47 SYKSAWDAINEMNQLSEH-ILVERA-----TGGKGGGGAVLTRYGQRLIQLYD 93 (265)
T ss_dssp CHHHHHHHHHHHHHHHTS-CCEEEC-----CCC-----EEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCC-CeEEec-----CCCCCCCceEECHHHHHHHHHHH
Confidence 455666778888888898 555543 35799999999999999999886
No 181
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=48.45 E-value=20 Score=36.05 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 52 QPTVLLLDEPTSGLD---SASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 52 ~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
.|.++++||-=.=++ +..+..+.+.+++.++.|..+++++|.|.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999877774 677888889999998899999999999864
No 182
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=48.39 E-value=19 Score=33.33 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEPTS-GLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.....+-++++++..-+.+.+.+.+++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456555542 33578999999999966 78877765555555544444457777766665556665543
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=46.34 E-value=2.8 Score=38.06 Aligned_cols=70 Identities=17% Similarity=0.112 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhH-HHhhcCeEEEEe
Q 009738 36 SSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSH-LFYLFDDLLLLS 109 (527)
Q Consensus 36 SgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~-i~~~~d~v~~l~ 109 (527)
+.|+.+|..++.....+|+.+..+ .+.++|.....+.+.++.. .+.++|+..|...+. +...||.++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678899999999888888654333 3345555555554444322 355788888864321 356788888875
No 184
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=43.99 E-value=15 Score=33.50 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=31.4
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCCE-EEEEecCCh
Q 009738 51 TQPTVLLLDEPTSGL-DSASAFFVIQVLKCIALDGRI-VVCSIHQPS 95 (527)
Q Consensus 51 ~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~~~t-vi~~~H~~~ 95 (527)
.+|.++++||.-.-- +......+.+.+.+..+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888887777665 777777543
No 185
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=43.66 E-value=47 Score=32.89 Aligned_cols=53 Identities=25% Similarity=0.327 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCEEEEeCC-------CCCCCHHHHHHHHHHHHHHHh------CCCEEEEEecCC
Q 009738 42 RLSISIEILTQPTVLLLDEP-------TSGLDSASAFFVIQVLKCIAL------DGRIVVCSIHQP 94 (527)
Q Consensus 42 Rl~ia~~l~~~p~llllDEP-------tsgLD~~~~~~i~~~l~~l~~------~~~tvi~~~H~~ 94 (527)
|-.+..+-..+|.+|++||. ..+.+........+.+..+.. .+..+|.+++.|
T Consensus 166 ~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~ 231 (357)
T 3d8b_A 166 RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP 231 (357)
T ss_dssp HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG
T ss_pred HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh
Confidence 34455555678999999998 344444444444444444431 234566677764
No 186
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=41.78 E-value=0.55 Score=45.67 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=26.3
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Q 009738 32 LRGISSGEKKRLSISIEILTQPTVLLLDEPTS 63 (527)
Q Consensus 32 ~~~lSgGer~Rl~ia~~l~~~p~llllDEPts 63 (527)
+..|||||+||+.+++++..+|++| ||++.
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 4569999999999999999999975 98864
No 187
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.77 E-value=6.9 Score=38.72 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=25.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHH---HhCCCEEEEEecCCh
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCI---ALDGRIVVCSIHQPS 95 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l---~~~~~tvi~~~H~~~ 95 (527)
.|.++++||+....|......+..+++.+ ...+.++|+++|++.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 38899999998765321122233333333 223567888898853
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=40.94 E-value=0.87 Score=47.22 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=28.0
Q ss_pred HHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEE
Q 009738 13 TIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLL 57 (527)
Q Consensus 13 ~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~lll 57 (527)
.+..+|+.+.. . +..|||||+|| ||++++.+|++..
T Consensus 279 rL~~lgl~~~~--~-----~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 279 RLRDMGIEPFL--I-----SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHTCCHHH--H-----HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHcCCcHHH--H-----HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 46667776542 2 24699999999 9999999999875
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=40.44 E-value=14 Score=33.19 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 478999999765 7777766666655432 13456777777754
No 190
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=39.60 E-value=41 Score=29.61 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
.++.+.++..++.|..+|.++..+.+.+.+.+|.++.+..++
T Consensus 93 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~ 134 (186)
T 1m3s_A 93 KSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSP 134 (186)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 677888888888888888888877778999999988876554
No 191
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=37.76 E-value=15 Score=39.73 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=45.3
Q ss_pred CCCCHH-HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEec
Q 009738 33 RGISSG-EKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDG-RIVVCSIH 92 (527)
Q Consensus 33 ~~lSgG-er~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~-~tvi~~~H 92 (527)
.+++.+ +++...+.+.++.+|..++++.+|.++|..+. ...+.++++..+| +||++.+|
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~-~~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATT-EALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTC-HHHHHHHHHCSSCCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccH-HHHHHHHHHhhcCCceEEEecc
Confidence 455544 45778899999999999999999999998844 4677888876665 56666666
No 192
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=37.36 E-value=41 Score=29.56 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..+.+.++..++.|.++|.++..+.+.+.+++|.++.+..|
T Consensus 124 ~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 124 PNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 55677777777788888877777777899999998877654
No 193
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=35.59 E-value=44 Score=29.30 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 70 ~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..++.+.++..++.|..+|.++..+...+.+.+|.++.+..|
T Consensus 109 t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~ 150 (183)
T 2xhz_A 109 SSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVA 150 (183)
T ss_dssp CHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCS
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCC
Confidence 356778888877788777777777778899999999887654
No 194
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=35.49 E-value=47 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.++.+.++..++.|..+|.++..+...+.+++|.++.+..+
T Consensus 101 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 141 (187)
T 3sho_A 101 RDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATR 141 (187)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCC
Confidence 56777888888888888888887778899999999987654
No 195
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=34.52 E-value=0.42 Score=50.99 Aligned_cols=73 Identities=5% Similarity=-0.072 Sum_probs=51.1
Q ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCChhHH--HhhcCeEEEEeCCeEEEE-eChhhH
Q 009738 47 IEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD-GRIVVCSIHQPSSHL--FYLFDDLLLLSNGETIYF-GDAKMA 122 (527)
Q Consensus 47 ~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~~~~i--~~~~d~v~~l~~G~~~~~-G~~~~~ 122 (527)
++|..| ++||+ ||.+.+|| ++..+.. +|.++ +.++.+++|. .+++ .++.|++..+.+|.++.. +++++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~---eLt~~~~~~iP~vsa~-md~~t~~~la~~ia~~gg~gii~~~~t~e~~ 100 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTS---ALTRKITLKTPLISSP-MDTVTEADMAIAMALMGGIGFIHHNCTPEFQ 100 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCE---ESSSSCEESSCEEECC-CTTTCSHHHHHHHHHTTCEEEECCSSCHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEe---eccCCeeEeceEEEEe-hhhhhhhhHHHHHHhcCCeeEEecCCCHHHH
Confidence 788889 99999 99999999 4433332 33333 4567777886 4556 678888888877777754 467766
Q ss_pred HHHH
Q 009738 123 VKFF 126 (527)
Q Consensus 123 ~~~f 126 (527)
.++.
T Consensus 101 ~~~v 104 (514)
T 1jcn_A 101 ANEV 104 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=34.35 E-value=43 Score=32.27 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCEEEEeCCCC-------------CCCHHHHHHHHHHHHHHHh-CCCEEEEEecCC
Q 009738 44 SISIEILTQPTVLLLDEPTS-------------GLDSASAFFVIQVLKCIAL-DGRIVVCSIHQP 94 (527)
Q Consensus 44 ~ia~~l~~~p~llllDEPts-------------gLD~~~~~~i~~~l~~l~~-~~~tvi~~~H~~ 94 (527)
.+..+.-..|.++++||.-+ +.......++++.+..+.. .+..||.+++.|
T Consensus 100 ~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 34445556899999999642 2222333444444443332 355788888876
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=33.98 E-value=34 Score=33.25 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=42.2
Q ss_pred HHHHHHHHHh---CCCEEEEeCCCCCCC--------HHH----HHHHHHHHHHHHhC-CCEEEEEecCCh----------
Q 009738 42 RLSISIEILT---QPTVLLLDEPTSGLD--------SAS----AFFVIQVLKCIALD-GRIVVCSIHQPS---------- 95 (527)
Q Consensus 42 Rl~ia~~l~~---~p~llllDEPtsgLD--------~~~----~~~i~~~l~~l~~~-~~tvi~~~H~~~---------- 95 (527)
-+.....++. +++++++|.-++-.. ... ..+++..|++++++ |.+||++.|-..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 3445556664 589999999875321 121 24556666777654 777777765311
Q ss_pred -----hHHHhhcCeEEEEeCC
Q 009738 96 -----SHLFYLFDDLLLLSNG 111 (527)
Q Consensus 96 -----~~i~~~~d~v~~l~~G 111 (527)
..+.+.+|.++.|+..
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEEC
T ss_pred CCCCcHHHHhcCcEEEEEEec
Confidence 1255667777777643
No 198
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=33.59 E-value=1.4e+02 Score=29.75 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---HhC-CCEEEEEecCChh-----
Q 009738 41 KRLSISIEIL--TQPTVLLLDEPTSGL-----DS--------ASAFFVIQVLKCI---ALD-GRIVVCSIHQPSS----- 96 (527)
Q Consensus 41 ~Rl~ia~~l~--~~p~llllDEPtsgL-----D~--------~~~~~i~~~l~~l---~~~-~~tvi~~~H~~~~----- 96 (527)
+-+.+++.++ .+++++++|..++=. |. .....+.+.+++| +++ +.+||++.|-...
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~f 218 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMY 218 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCccc
Confidence 3456666776 468999999998643 11 1123344555555 444 7777777664211
Q ss_pred ----------HHHhhcCeEEEEeCCe
Q 009738 97 ----------HLFYLFDDLLLLSNGE 112 (527)
Q Consensus 97 ----------~i~~~~d~v~~l~~G~ 112 (527)
.+...+|-++.|..++
T Consensus 219 g~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 219 GNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -------CHHHHHHHCSEEEEEEEES
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 1456678888887655
No 199
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=33.55 E-value=48 Score=29.38 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..+.+.++..++.|..+|.++..+...+.+++|.++.+..+
T Consensus 130 ~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 130 PNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 45677777777788877777777677889999988876654
No 200
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=33.25 E-value=1.4e+02 Score=30.90 Aligned_cols=68 Identities=22% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhC-CCEEEEEecCCh---------------
Q 009738 42 RLSISIEIL--TQPTVLLLDEPTSGL-------DS-ASAFFVIQVLKCIALD-GRIVVCSIHQPS--------------- 95 (527)
Q Consensus 42 Rl~ia~~l~--~~p~llllDEPtsgL-------D~-~~~~~i~~~l~~l~~~-~~tvi~~~H~~~--------------- 95 (527)
.++.++.+. .+|+++++|=-+. + +. ....++++.|+.++++ |.+||+++|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 344445544 3699999995543 2 21 2334677888888776 889999888542
Q ss_pred ------hHHHhhcCeEEEEeC
Q 009738 96 ------SHLFYLFDDLLLLSN 110 (527)
Q Consensus 96 ------~~i~~~~d~v~~l~~ 110 (527)
..+.+.+|-|+.|..
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 236677899999863
No 201
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=32.88 E-value=39 Score=31.85 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=32.9
Q ss_pred HHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh---C-CCEEEEEecCC
Q 009738 44 SISIEILTQPTVLLLDEPTS----------GLDSASAFFVIQVLKCIAL---D-GRIVVCSIHQP 94 (527)
Q Consensus 44 ~ia~~l~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~---~-~~tvi~~~H~~ 94 (527)
.+..+.-.+|.+|++||.-. +-|......+.+.+..+.. . +..+|.+++.|
T Consensus 102 ~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 102 IFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 34455566889999999743 1255566677777777642 2 44577777765
No 202
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=32.49 E-value=92 Score=25.61 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=37.7
Q ss_pred HhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 50 LTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 50 ~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..+|+.+++| ...+.+|+.....+.+..+++++.|..++++--+
T Consensus 46 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 90 (130)
T 4dgh_A 46 QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLISGAN 90 (130)
T ss_dssp SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3578899999 7889999999999999999999988888777554
No 203
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=31.57 E-value=57 Score=29.28 Aligned_cols=61 Identities=16% Similarity=0.145 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCC-CCCHHH----------HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 52 QPTVLLLDEPTS-GLDSAS----------AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 52 ~p~llllDEPts-gLD~~~----------~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
...+..++++.. .+++.. ..++++.++..++.|..+|.+|..+.+.+.+++|.++.+..++
T Consensus 73 g~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 73 GYTVYVVGETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp TCCEEETTSTTCCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCeEEEeCCccccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 556666666543 233322 3677888888888888888888877788999999998876554
No 204
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=31.57 E-value=92 Score=28.56 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=25.9
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-----------CHHHHHHHHHHHHHHHh----CCCEEEEEecCCh
Q 009738 45 ISIEILTQPTVLLLDEPTSGL-----------DSASAFFVIQVLKCIAL----DGRIVVCSIHQPS 95 (527)
Q Consensus 45 ia~~l~~~p~llllDEPtsgL-----------D~~~~~~i~~~l~~l~~----~~~tvi~~~H~~~ 95 (527)
+..+.-..|.++++||.-.=. +......+.+++..+.. .+..+|.++..+.
T Consensus 91 ~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~ 156 (262)
T 2qz4_A 91 FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD 156 (262)
T ss_dssp HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG
T ss_pred HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh
Confidence 344444578999999986532 23333444555555443 2345666666653
No 205
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.42 E-value=21 Score=34.76 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChh
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSS 96 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~ 96 (527)
+++++++|| ...+++.....+.+.+.+... +..+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 456999999 788999888888887776543 3345666666543
No 206
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.17 E-value=32 Score=30.67 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=36.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC---------ChhHHHhhcCeEEEEe
Q 009738 52 QPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ---------PSSHLFYLFDDLLLLS 109 (527)
Q Consensus 52 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~---------~~~~i~~~~d~v~~l~ 109 (527)
+++++++||-=. +|+ .+.+.|+.++++|..|+++-++ +...+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999643 442 3667778788888899988773 2344556677775543
No 207
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=30.99 E-value=42 Score=30.08 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.++.+.++..++.|..+|.++..+.+.+.+++|.++.+..+
T Consensus 106 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 106 GELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp HHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 56777888877788888888888888899999999988755
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=30.52 E-value=41 Score=31.13 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=30.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC----------------CCEEEEEecCChh---HHHhhcCeEEEEe
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD----------------GRIVVCSIHQPSS---HLFYLFDDLLLLS 109 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~----------------~~tvi~~~H~~~~---~i~~~~d~v~~l~ 109 (527)
.+.+|++|||.+. .....+-+.++.+-+. ...+|+|+..+.. ....+-+|+..++
T Consensus 102 ~~~kIiiLDEad~----~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~ 175 (212)
T 1tue_A 102 TDTKVAMLDDATT----TCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFE 175 (212)
T ss_dssp TTCSSEEEEEECH----HHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEE
T ss_pred CCCCEEEEECCCc----hhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEE
Confidence 3678999999873 2333333455554222 2467777765321 2234556776654
No 209
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.84 E-value=74 Score=28.24 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhh---cCeEEEEeCCe
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYL---FDDLLLLSNGE 112 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~---~d~v~~l~~G~ 112 (527)
..+.+.++..++.|..+|.++..+.+.+.++ +|.++.+..++
T Consensus 127 ~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~ 171 (199)
T 1x92_A 127 ANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKI 171 (199)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCc
Confidence 6677888888888888888887777889999 99888876543
No 210
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=28.49 E-value=79 Score=28.88 Aligned_cols=43 Identities=14% Similarity=0.028 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHh--CCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 70 AFFVIQVLKCIAL--DGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 70 ~~~i~~~l~~l~~--~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..++++.++..++ .|..+|.++..+.+.+.+.+|.++....++
T Consensus 119 t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~ 163 (220)
T 3etn_A 119 TREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPA 163 (220)
T ss_dssp CHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCc
Confidence 3678888888888 898888888887888999999999876553
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=28.43 E-value=83 Score=26.31 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=31.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~ 94 (527)
.+..++++||.- .++...+..+.+.+.+..+.+..+|++++.+
T Consensus 74 a~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 74 AEGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 357899999965 6788888888888877544455677776654
No 212
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=28.26 E-value=30 Score=33.50 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CC--EEEEEecCChhHHHhhcCeEE
Q 009738 35 ISSGEKKRLSISIEIL--TQPTVLLLDEPTSGLDSAS-AFFVIQVLKCIALD-GR--IVVCSIHQPSSHLFYLFDDLL 106 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~--~~p~llllDEPtsgLD~~~-~~~i~~~l~~l~~~-~~--tvi~~~H~~~~~i~~~~d~v~ 106 (527)
+|+|++ .++..+. ..|.++++ +.+|... +..+.+.++++++. |. .+.++.|+. ..+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 4556665 68999998 7899876 67778888888764 43 555666663 45666666544
No 213
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=27.37 E-value=76 Score=31.38 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 70 ~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 104 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 146 (344)
T 3fj1_A 104 SPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGP 146 (344)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCC
Confidence 4778888888888899999999988899999999999987764
No 214
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=26.66 E-value=2.1e+02 Score=34.86 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=46.5
Q ss_pred HHHHHHHHHH--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHh-CCCEEEEEecC--------
Q 009738 41 KRLSISIEIL--TQPTVLLLDEPTSGLD-S------------ASAFFVIQVLKC---IAL-DGRIVVCSIHQ-------- 93 (527)
Q Consensus 41 ~Rl~ia~~l~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l~~---l~~-~~~tvi~~~H~-------- 93 (527)
+-...++.++ .+|+++++|+..+=.. . ....++.+.+++ +++ .|.+||++.|-
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555444 5899999999887552 1 122345444554 444 48899998873
Q ss_pred --C-----hhHHHhhcCeEEEEeCCeEE
Q 009738 94 --P-----SSHLFYLFDDLLLLSNGETI 114 (527)
Q Consensus 94 --~-----~~~i~~~~d~v~~l~~G~~~ 114 (527)
| +..+.+.+|-++.++.++..
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~~~ 904 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIGAV 904 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecccc
Confidence 1 22477788889999765543
No 215
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=26.42 E-value=57 Score=29.56 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
.++++.++..++.|..+|.++..+.+.+.+++|.++.+..|
T Consensus 145 ~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~g 185 (212)
T 2i2w_A 145 ANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHF 185 (212)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCCC
Confidence 56777888877788877777777777888999988887765
No 216
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=25.73 E-value=81 Score=30.90 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 70 ~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 87 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~ 129 (329)
T 3eua_A 87 TPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGD 129 (329)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCST
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCC
Confidence 4677788888888899999999888899999999999888764
No 217
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=25.20 E-value=1.2e+02 Score=25.24 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=36.8
Q ss_pred hCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 51 TQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 51 ~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
.+++.+++| ...+.+|+.....+.+..+++++.|..++++--+
T Consensus 50 ~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 93 (135)
T 4dgf_A 50 ETPKVFILRMRRVPVIDATGMHALWEFQESCEKRGTILLLSGVS 93 (135)
T ss_dssp SCCSEEEEECTTCSCBCHHHHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred CCCcEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 578899999 6788999999999999999999888887777544
No 218
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=24.54 E-value=2.4e+02 Score=21.84 Aligned_cols=38 Identities=24% Similarity=0.425 Sum_probs=23.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIH 92 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H 92 (527)
..|+++++|--..+.|.. ++.+.+++.. .+..+|+.+.
T Consensus 46 ~~~dlvl~D~~l~~~~g~---~~~~~l~~~~-~~~~ii~~s~ 83 (124)
T 1srr_A 46 ERPDLVLLDMKIPGMDGI---EILKRMKVID-ENIRVIIMTA 83 (124)
T ss_dssp HCCSEEEEESCCTTCCHH---HHHHHHHHHC-TTCEEEEEES
T ss_pred cCCCEEEEecCCCCCCHH---HHHHHHHHhC-CCCCEEEEEc
Confidence 589999999888777743 4444555432 2344444433
No 219
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.17 E-value=1.9e+02 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=24.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..|+++++|--..+.|. .++++.+++....-..|+++.+.
T Consensus 48 ~~~dlvi~d~~l~~~~g---~~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 48 NSIDVVITDMKMPKLSG---MDILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp TTCCEEEEESCCSSSCH---HHHHHHHHHHCTTCEEEEEECTT
T ss_pred CCCCEEEEeCCCCCCcH---HHHHHHHHHhCCCCeEEEEECCC
Confidence 58999999988887774 34555555432222334444444
No 220
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=24.14 E-value=1e+02 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhh---cCeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYL---FDDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~---~d~v~~l~~G 111 (527)
..+.+.++..++.|..+|.++..+.+.+.++ +|.++.+..+
T Consensus 123 ~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~ 166 (196)
T 2yva_A 123 RDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSH 166 (196)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCC
Confidence 6677888888888888888887777788888 8887776544
No 221
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=23.80 E-value=84 Score=24.68 Aligned_cols=53 Identities=11% Similarity=-0.051 Sum_probs=40.8
Q ss_pred HhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCe
Q 009738 50 LTQPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDD 104 (527)
Q Consensus 50 ~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~ 104 (527)
..+|+.+++| ....-+|+.....+.+..++++++|..+.++--+ ..+.+++++
T Consensus 41 ~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~--~~v~~~l~~ 94 (99)
T 3oiz_A 41 REALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVRIVGMN--EASETMVDR 94 (99)
T ss_dssp TSCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEEEESHH--HHHTTCC--
T ss_pred cCCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHH
Confidence 3578888888 6688999999999999999999999888877544 345555443
No 222
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=23.61 E-value=1.6e+02 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=36.0
Q ss_pred CCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 52 QPTVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 52 ~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
+++.+++| .-.+.+|+.....+.+..+++++.|..+.++-.+
T Consensus 63 ~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 105 (143)
T 3llo_A 63 NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCS 105 (143)
T ss_dssp CCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCC
T ss_pred CceEEEEECCCCccccHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67889998 6788999999999999999999888887777544
No 223
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=23.45 E-value=66 Score=28.20 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=27.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQP 94 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~~ 94 (527)
.++.++++||. ..++......+.+.+.+. ..+..+|+++..+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 46889999995 456766666666666542 2344566666664
No 224
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=23.27 E-value=89 Score=28.13 Aligned_cols=41 Identities=10% Similarity=-0.011 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhc---CeEEEEeCC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLF---DDLLLLSNG 111 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~---d~v~~l~~G 111 (527)
.++++.++..++.|..+|.++..+.+.+.+++ |.++.+...
T Consensus 128 ~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~ 171 (201)
T 3trj_A 128 ENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSD 171 (201)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCC
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCC
Confidence 56777888888888888888887778899999 998887654
No 225
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=23.25 E-value=3.7e+02 Score=25.11 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 009738 1 MTNDEINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKKRLSISIEILTQPTVLLLDEPTSGLDS 67 (527)
Q Consensus 1 ~~~~~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~ 67 (527)
++.+|++++++..++.+-=..-.|-..|+.... .++-.......+.+-.++++|-=|++...
T Consensus 80 ~s~~ei~~~l~~al~~vP~a~GvnNHmGS~~T~-----~~~~m~~vm~~l~~~gL~fvDS~Ts~~S~ 141 (245)
T 2nly_A 80 LSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVE-----NEKIMRAILEVVKEKNAFIIDSGTSPHSL 141 (245)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCEEEEEECTTGGG-----CHHHHHHHHHHHHHTTCEEEECCCCSSCS
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecccccchhc-----CHHHHHHHHHHHHHCCCEEEcCCCCcccH
Confidence 467889999999999875433334445543221 22333333444455679999999987753
No 226
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=22.44 E-value=2.2e+02 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=24.2
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 51 TQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 51 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..|+++++|--..+.|- .++.+.+++....-..++++.+.
T Consensus 46 ~~~dlil~D~~l~~~~g---~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 46 LKPDIVTMDITMPEMNG---IDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HCCSEEEEECSCGGGCH---HHHHHHHHHHCTTCCEEEEECTT
T ss_pred cCCCEEEEeCCCCCCcH---HHHHHHHHhhCCCCeEEEEeCCC
Confidence 47999999987777664 34555555433223345555444
No 227
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=21.95 E-value=78 Score=33.04 Aligned_cols=50 Identities=12% Similarity=0.270 Sum_probs=28.3
Q ss_pred HHHHHHhCCCEEEEeCCC----------CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCC
Q 009738 45 ISIEILTQPTVLLLDEPT----------SGLDSASAFFVIQVLKCIALD-GRIVVCSIHQP 94 (527)
Q Consensus 45 ia~~l~~~p~llllDEPt----------sgLD~~~~~~i~~~l~~l~~~-~~tvi~~~H~~ 94 (527)
+..+.-..|.+||+||-- ..++.....++.+.+..+... +..+|.+++.|
T Consensus 290 f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred HHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 444555678999999961 222223334444444443333 44677777776
No 228
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=21.92 E-value=1.9e+02 Score=28.28 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCcccccccccCcccCCCCHHHHH-HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 009738 5 EINDIVEETIIKMGLQACAETKIGNWHLRGISSGEKK-RLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALD 83 (527)
Q Consensus 5 ~~~~~v~~~l~~l~L~~~~~~~i~~~~~~~lSgGer~-Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 83 (527)
+.+..++++++.+|..+..-.... ..+-|..++. |+.-..+-+.++|+++.--|+-..-. -... .++.+++.
T Consensus 29 ka~~dv~~i~~~~G~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~DvIi~q~P~~~~~~-~~~~---~~~~lk~~ 101 (339)
T 3rhz_A 29 LCQNTVTDVAVSLGYRELGIYCYQ---IHTDSESELSKRLDGIVAGLRHGDVVIFQTPTWNTTE-FDEK---LMNKLKLY 101 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCC---GGGSCHHHHHHHHHHHTTTCCTTCEEEEEECCSSCHH-HHHH---HHHHHTTS
T ss_pred HHHHHHHHHHHHCCCeEEEeeccc---cccccHHHHHHHHHHHHhcCCCCCEEEEeCCCcchhh-HHHH---HHHHHHhc
Confidence 345678999999998764422111 1122444443 55544556779999999999743211 1122 34444445
Q ss_pred CCEEEEEecCChh
Q 009738 84 GRIVVCSIHQPSS 96 (527)
Q Consensus 84 ~~tvi~~~H~~~~ 96 (527)
|..+++.+||...
T Consensus 102 ~~k~i~~ihDl~p 114 (339)
T 3rhz_A 102 DIKIVLFIHDVVP 114 (339)
T ss_dssp SCEEEEEESCCHH
T ss_pred CCEEEEEecccHH
Confidence 7889999999643
No 229
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=21.72 E-value=2.8e+02 Score=21.30 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=36.6
Q ss_pred HHHHhCC-CEEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 009738 47 IEILTQP-TVLLLD-EPTSGLDSASAFFVIQVLKCIALDGRIVVCSIHQ 93 (527)
Q Consensus 47 ~~l~~~p-~llllD-EPtsgLD~~~~~~i~~~l~~l~~~~~tvi~~~H~ 93 (527)
..+...+ +.+++| .-.+.+|+.....+.+..+++++.|..+.++.-+
T Consensus 37 ~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~ 85 (110)
T 1sbo_A 37 NFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKEFILSSLK 85 (110)
T ss_dssp THHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCEEEEESCC
T ss_pred HHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3343444 778888 6788999999999999999999888777666433
No 230
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.66 E-value=2.9e+02 Score=21.49 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=24.7
Q ss_pred CCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEEecCCh
Q 009738 52 QPTVLLLDEPTSG-LDSASAFFVIQVLKCIALDGRIVVCSIHQPS 95 (527)
Q Consensus 52 ~p~llllDEPtsg-LD~~~~~~i~~~l~~l~~~~~tvi~~~H~~~ 95 (527)
.|+++++|--..+ .|. .++.+.+++....-..|+++.+...
T Consensus 50 ~~dlvi~d~~l~~~~~g---~~~~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 50 AIDGVVTDIRFCQPPDG---WQVARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp CCCEEEEESCCSSSSCH---HHHHHHHHHHCTTCCEEEEESSCCT
T ss_pred CCCEEEEeeeCCCCCCH---HHHHHHHHhcCCCCCEEEEeCCccH
Confidence 7999999987775 664 3455555554322334555555433
No 231
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=21.61 E-value=92 Score=30.64 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCCe
Q 009738 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNGE 112 (527)
Q Consensus 70 ~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G~ 112 (527)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|.
T Consensus 103 T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~ 145 (334)
T 3hba_A 103 SPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGE 145 (334)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCC
T ss_pred CHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCC
Confidence 4677888888888899899999888889999999999988664
No 232
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=21.53 E-value=54 Score=32.44 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEec
Q 009738 35 ISSGEKKRLSISIEILTQPTVLLLDEPTSGLDSASAFFVIQVLKCIALDGR-IVVCSIH 92 (527)
Q Consensus 35 lSgGer~Rl~ia~~l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~~~-tvi~~~H 92 (527)
-+++++++..+++..+.+|+++++.-..+..|..+ ....+.++.+...|. ++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999877774334445443 455667777666654 5555443
No 233
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.30 E-value=89 Score=27.16 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeC
Q 009738 71 FFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSN 110 (527)
Q Consensus 71 ~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~ 110 (527)
.++.+.++..++.|..+|.++..+.. +.+.+|.++.+..
T Consensus 96 ~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~ 134 (180)
T 1jeo_A 96 ESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEV 134 (180)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCC
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCC
Confidence 66788888888888877777777767 8899998887754
No 234
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=21.25 E-value=2.4e+02 Score=27.56 Aligned_cols=63 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHh--CCCEEEEEecCC---hhHHHhhcCeEEE
Q 009738 45 ISIEILTQPTVLLLDEPTSGLDS----------ASAFFVIQVLKCIAL--DGRIVVCSIHQP---SSHLFYLFDDLLL 107 (527)
Q Consensus 45 ia~~l~~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~--~~~tvi~~~H~~---~~~i~~~~d~v~~ 107 (527)
+..+-..+|.+|++||--+=... ....++...+..+.. .+..+|.+++.| ...+.+-||+.+.
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIY 213 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEE
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEE
Confidence 34444568999999996532211 112233333333222 345566677766 3345555665543
No 235
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=21.02 E-value=2.8e+02 Score=26.67 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHhCCCEEEEeCCCCC-------CCHHHHHHHHHHHHHHHh-----CCCEEEEEecCCh---hHHHhhcCeEE
Q 009738 45 ISIEILTQPTVLLLDEPTSG-------LDSASAFFVIQVLKCIAL-----DGRIVVCSIHQPS---SHLFYLFDDLL 106 (527)
Q Consensus 45 ia~~l~~~p~llllDEPtsg-------LD~~~~~~i~~~l~~l~~-----~~~tvi~~~H~~~---~~i~~~~d~v~ 106 (527)
+..+-..+|.+|++||.-+- ........+-+.+..+.. .+..+|.++..|. ..+.+-||+.+
T Consensus 98 f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i 174 (322)
T 1xwi_A 98 FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRI 174 (322)
T ss_dssp HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEE
T ss_pred HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEE
Confidence 44445578999999997432 122222333344444432 2345666777652 23344455443
No 236
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=20.97 E-value=1.1e+02 Score=30.34 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEecCChhHHHhhcCeEEEEeCC
Q 009738 70 AFFVIQVLKCIALDGRIVVCSIHQPSSHLFYLFDDLLLLSNG 111 (527)
Q Consensus 70 ~~~i~~~l~~l~~~~~tvi~~~H~~~~~i~~~~d~v~~l~~G 111 (527)
..++++.++..++.|..+|.++..+.+.+.+.+|.++.+..|
T Consensus 102 T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g 143 (347)
T 3fkj_A 102 TAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA 143 (347)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred cHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence 466777788777789999999988889999999999999877
Done!