RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009739
(527 letters)
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 122
Score = 102 bits (256), Expect = 2e-26
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 223 GNDEGSESGTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKV 282
G+ S + +F++++ ++ + K P + L+ +L + V GG+ V
Sbjct: 1 GSSGSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVV 60
Query: 283 TSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNI 342
+ W ++ V RG YE+ L Y SG L
Sbjct: 61 CKDRKWTKIATKMGFA-PGKAVGSHIRGHYERILNPYNLFL-SGDSLRCLQKPNLTSDTK 118
Query: 343 DNQ 345
D +
Sbjct: 119 DKE 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein,
DNA-binding motif, protein-DNA interaction; NMR {Homo
sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Length = 107
Score = 101 bits (254), Expect = 3e-26
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 234 EEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVG 292
++ +F+ L + ++R + P + +N +++A +LGGYE +T+ + W+ +
Sbjct: 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIY 61
Query: 293 ESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLP 332
+ T+ + R YE+ +L YER + LP
Sbjct: 62 DELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLP 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor,
transcription, transcription regulation; NMR {Mus
musculus}
Length = 121
Score = 99.5 bits (248), Expect = 3e-25
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 237 SSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESF 295
+ ++ R + + + P G L+ +R + +GG ++VT K W ++ +
Sbjct: 14 VQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADML 73
Query: 296 KPPKTCTTVSWTFRGFYEKALLDYER 321
+ PKT + Y + LL Y+
Sbjct: 74 RIPKTAQDRLAKLQEAYCQYLLSYDS 99
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Drosophila melanogaster}
Length = 107
Score = 98.8 bits (246), Expect = 3e-25
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 231 GTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQ 290
+ +F++++ F+ + K P + L+ L R V GG E+ T + W +
Sbjct: 11 AKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAK 70
Query: 291 VGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTS 325
V + P + +V T + YE+ L +E + +
Sbjct: 71 VANRMQYP-SSKSVGATLKAHYERILHPFEVYTSG 104
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Length = 117
Score = 98.1 bits (244), Expect = 1e-24
Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 231 GTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQ 290
+ ++++++ F+ + K P L+ L + V GGYE + + W +
Sbjct: 7 AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWAR 66
Query: 291 VGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
V + P + R YE+ + YE +++ + ++
Sbjct: 67 VAQRLNYP-PGKNIGSLLRSHYERIVYPYEMYQSGANLVCNTRPFDNE 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator,
developmental protein, dioxygenase, iron, metal-binding,
nucleus, oxidoreductase; NMR {Homo sapiens}
Length = 96
Score = 96.1 bits (239), Expect = 2e-24
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 231 GTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQ 290
G+ F+++L F+ + K P + L+ L + V GG+E VT K W +
Sbjct: 4 GSRVRLD-FLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSK 62
Query: 291 VGESFKPPKTCTTVSWTFRGFYEKALLDYERHKT 324
VG + YE+ L YE ++
Sbjct: 63 VGSRLGYLPG-KGTGSLLKSHYERILYPYELFQS 95
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A
1ryu_A
Length = 125
Score = 95.9 bits (238), Expect = 6e-24
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 228 SESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCK 286
E G E E+ +++ F +R P + L+ +L+ V +GG +V K
Sbjct: 14 YELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNK 73
Query: 287 LWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQ 338
WR++ + T ++ + + + Y + L +E G E V S
Sbjct: 74 KWRELATNLNVG-TSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGD 124
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction
domain, DNA- binding protein; NMR {Drosophila
melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Length = 128
Score = 94.4 bits (234), Expect = 3e-23
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 229 ESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKL 287
E + ++ F+++L +F + R + P L+ +L+ V GG V + KL
Sbjct: 16 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 75
Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGE 328
W+++ + P + T+ ++T R Y K L YE K +
Sbjct: 76 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLST 116
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 87.5 bits (216), Expect = 1e-20
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 228 SESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCK 286
E + ++ F+++L +F + R + P + L+ L+ VT GG +V + K
Sbjct: 27 YELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKK 86
Query: 287 LWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQA 346
LWR++ + P + T+ ++T R Y K L YE K ID+
Sbjct: 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN------PNELQAAIDSNR 140
Query: 347 SGSGR 351
R
Sbjct: 141 REGRR 145
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 85.0 bits (210), Expect = 5e-20
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 233 EEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQV 291
++ FM+ L + R+M P+ +N L+ V + GG ++VT + W V
Sbjct: 16 NKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMV 75
Query: 292 GESFKPPKTCTTVSWTFRGFYEKALLDYERHKTS 325
+ + Y + LL YERH S
Sbjct: 76 AQRLQISDYQQL-----ESIYFRILLPYERHMIS 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 83.5 bits (206), Expect = 1e-19
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 228 SESGTEEEQSSFMEELENFFRDRSMEF-KPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCK 286
S ++ FM+ L + R+M P+ +N L+ V + GG ++VT +
Sbjct: 12 STELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQ 71
Query: 287 LWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTS 325
W V + + Y + LL YERH S
Sbjct: 72 QWSMVAQRLQISDYQQL-----ESIYFRILLPYERHMIS 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 89.7 bits (222), Expect = 8e-19
Identities = 101/560 (18%), Positives = 172/560 (30%), Gaps = 185/560 (33%)
Query: 54 LESHST-PLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIEDTTAET--DT 110
++++ST PL ++S + S++ L VP T A +
Sbjct: 1 MDAYSTRPL----TLS------------------HGSLEH-VLLVP-TASFFIASQLQEQ 36
Query: 111 ILSSNSELPESSKVEAPDN---SPVESKA---GHAAASKAEASTAEPHADSIAELPAESE 164
LPE ++ A D+ +P E G+ + S E S D + L +E
Sbjct: 37 FNKI---LPEPTEGFAADDEPTTPAELVGKFLGYVS-SLVEPSKV-GQFDQVLNL-CLTE 90
Query: 165 AKPSF-------KVQAATPNRNAAPSDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSAQ 217
+ + + A +DT L + IK+ + + P ++KSNSA
Sbjct: 91 FENCYLEGNDIHALAAKLL----QENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNSA- 144
Query: 218 LFLLDGNDEGSES--------GTEEEQSSFMEELENFFR----------DRSME------ 253
L EG+ G ++ + EEL + ++ S E
Sbjct: 145 --LFRAVGEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 254 ---FKPPKFYGEGLNCLKLWRAVTRLGGYEKVTSCKLWRQVGESFKPPK---TCTTVSWT 307
K + +GLN L+ W + S P K +S
Sbjct: 200 RTTLDAEKVFTQGLNILE-------------------WLE-NPSNTPDKDYLLSIPISCP 239
Query: 308 FRGFYEKALLDYER-HKTSG---GEL-----SLPVASQSQPMNIDNQASGSGRARRDAAA 358
G L Y K G GEL SQ + + S + +
Sbjct: 240 LIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 359 RAMQ-----GWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPSYMELAV 413
+A+ G + + I++D SL+ E PS M L++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILED----SLENNEGV-----------PSPM-LSI 341
Query: 414 KAARTKTSKSQLDVAVVDL---GPPADWVKINVQRTKDCFEV-------YALVPGLLREE 463
++ Q+ V P V+I++ V Y L L + +
Sbjct: 342 SNL----TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 464 VRVQSD----P-AGR--------LVISGEPEHPDNPWGVTPFKKVVSL-PA--RIDPHLT 507
D P + R L ++ P H + L PA I+ L
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVA-SPFH-------SHL-----LVPASDLINKDLV 444
Query: 508 SAVVTLHG-QLFVRVPFEQT 526
V+ + + ++P T
Sbjct: 445 KNNVSFNAKDI--QIPVYDT 462
Score = 50.0 bits (119), Expect = 2e-06
Identities = 45/205 (21%), Positives = 68/205 (33%), Gaps = 58/205 (28%)
Query: 54 LESH-STPLQE-PPSISLDVLGDTSSADPDI-QPSAYASVKAKTLEVPNTIEDTTAETDT 110
+ + + P PPSI D S + + PS S+ T E ++D +T
Sbjct: 308 VRCYEAYPNTSLPPSILED------SLENNEGVPSPMLSISNLTQE---QVQDYVNKT-- 356
Query: 111 ILSSNSELPESSKVE-----APDNSPVESKAGHAAA-----SKAEASTAEPHADSIAELP 160
NS LP +VE N V +G + + A D + +P
Sbjct: 357 ----NSHLPAGKQVEISLVNGAKNLVV---SGPPQSLYGLNLTLRKAKAPSGLDQ-SRIP 408
Query: 161 AESEAKPSFKVQ--AATPNRNAAP--SDTELKNVNDTEIKDKVNKSELPTLPMNEKSNSA 216
SE K F + +P S L +D KD V N N+
Sbjct: 409 F-SERKLKFSNRFLPVA-----SPFHSHL-LVPASDLINKDLVKN--------NVSFNAK 453
Query: 217 QLFL-----LDGND--EGSESGTEE 234
+ + DG+D S S +E
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISER 478
Score = 40.8 bits (95), Expect = 0.001
Identities = 77/513 (15%), Positives = 127/513 (24%), Gaps = 234/513 (45%)
Query: 54 LESHSTPLQEPPSI---SLDVLG--DTSSADPD----------------IQPSAYASVKA 92
L + + L++L + S PD IQ + Y V A
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV-VTA 253
Query: 93 KTLEVPNTIEDTTAETDTILSSNSELPESSKVEAPDNSPVESKAGH-----AAASKAEAS 147
K L T E + L + GH A + AE
Sbjct: 254 KLLGF------TPGELRSYLKGAT--------------------GHSQGLVTAVAIAETD 287
Query: 148 TAEPHADSIAELPAESEAKPSF----KVQAATPNRNAAPSDTE---------------LK 188
+ E S F + A PN + PS E +
Sbjct: 288 SWE----SFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 189 NVNDTEIK---DKVNKSELPTLPMNEK-----SNSAQ----------LFLLDGNDEGSES 230
N+ +++ +K N LP ++ N A+ L+ L+ +++
Sbjct: 343 NLTQEQVQDYVNKTNSH----LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 231 GTEEEQSSFMEELENFFRDRSMEFKPPKFYGEGLNCLKLWRAVTRLGGYEKVTS---CKL 287
+ +QS F +R KF L V S L
Sbjct: 399 PSGLDQSRIP------FSER-----KLKFSNRFLP----------------VASPFHSHL 431
Query: 288 WRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTSGGELSLPVASQSQPMNIDNQAS 347
+ VS+ + ++ +PV +
Sbjct: 432 LVPASDLINKDLVKNNVSF------------------NAKDIQIPVYD-----------T 462
Query: 348 GSGRARRDAAARAMQGWHSQHVLGSDEISDPIIKDKNHLSLQKCEKQLKSRGLIKRKKPS 407
G R S IS+ I+ I R P
Sbjct: 463 FDGSDLRVL---------------SGSISERIVD------------------CIIRL-PV 488
Query: 408 YMELAVKAARTKTSKSQLDVAVVDLGP-----PADWVKINVQRTKDCFEVYALVPGLLRE 462
E + T ++D GP N T G+
Sbjct: 489 KWETTTQFKATH---------ILDFGPGGASGLGVLTHRNKDGT-----------GV--- 525
Query: 463 EVRVQSDPAGRLVISGEPEH-PDNPWGVTPFKK 494
R++++G + PD+ +G FK+
Sbjct: 526 ----------RVIVAGTLDINPDDDYG---FKQ 545
Score = 32.7 bits (74), Expect = 0.33
Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 58/172 (33%)
Query: 335 SQSQPMNIDNQASGSGRARRDAAARAMQGW-----HSQHVLGSDEISDPIIKDKNHLSLQ 389
SQ Q M G + A W H + G I D I+ + N ++L
Sbjct: 1626 SQEQGM---------GMDLYKTSKAAQDVWNRADNHFKDTYGFS-ILD-IVIN-NPVNLT 1673
Query: 390 KCEKQLKSRGLIKRKKPSYMELAVKAARTKTSKSQLDVAVVDLGPPADWVKINVQRTKDC 449
K + + + Y + ++ +D + + IN T
Sbjct: 1674 IHFGGEKGKRIREN----YSAM--------IFETIVDGKLKTEKIFKE---INEHSTSYT 1718
Query: 450 FE------------------V-YALVPGLLREEVRVQSDP--AGRLVIS-GE 479
F + A L+ + + +D AG S GE
Sbjct: 1719 FRSEKGLLSATQFTQPALTLMEKAAF-EDLKSKGLIPADATFAGH---SLGE 1766
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 44.3 bits (105), Expect = 4e-06
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 446 TKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT--PFKKVVSLPARID 503
T D + V V +E+ V++ G + I+G+ + G F + +LP +D
Sbjct: 5 TADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD 63
Query: 504 PHLTSAVVTLHGQLFVRVP 522
P S+ ++ G L V P
Sbjct: 64 PTQVSSSLSPEGTLTVEAP 82
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 44.0 bits (104), Expect = 6e-06
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT--PFKKVVSL 498
V F V V EE+ V+ + + E + G F + L
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRL 62
Query: 499 PARIDPHLTSAVVTLHGQLFVRVP 522
P +DP ++ ++ G L ++
Sbjct: 63 PPGVDPAAVTSALSPEGVLSIQAT 86
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 43.6 bits (103), Expect = 7e-06
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 446 TKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGV--TPFKKVVSLPARID 503
KD F V V EE++V+ + + G+ E + G F + +PA +D
Sbjct: 4 EKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVD 62
Query: 504 PHLTSAVVTLHGQLFVRVP 522
P ++ ++ G L V P
Sbjct: 63 PLTITSSMSSDGVLTVNGP 81
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 44.6 bits (105), Expect = 1e-05
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTP--FKKVVSL 498
++ KD F V V EE++V+ + + G+ E + G F + +
Sbjct: 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRI 124
Query: 499 PARIDPHLTSAVVTLHGQLFVRVP 522
PA +DP ++ ++ G L V P
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGP 148
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 42.9 bits (102), Expect = 2e-05
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 436 ADWV-KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGE--PEHPDNPWGVT-- 490
A WV +++++ + F +YA +PG+ ++ VQ D G L I GE E +
Sbjct: 1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRI 59
Query: 491 -----PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522
F + +LP D +A +G L +R+P
Sbjct: 60 ERRYGSFHRRFALPDSADADGITAAGR-NGVLEIRIP 95
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 42.5 bits (100), Expect = 2e-05
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 441 INVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT--PFKKVVSL 498
V+ +D F ++ V E++ V+ + I G+ + G F + L
Sbjct: 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQE-DFVEIHGKHNERQDDHGYISREFHRRYRL 63
Query: 499 PARIDPHLTSAVVTLHGQLFVRVP 522
P+ +D S ++ G L P
Sbjct: 64 PSNVDQSALSCSLSADGMLTFSGP 87
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 42.8 bits (101), Expect = 6e-05
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 12/99 (12%)
Query: 434 PPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGE--PEHPDNPWGVT- 490
++ I++ +V A +PG+ +E++ + + L I + P +
Sbjct: 52 SGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIY 110
Query: 491 -------PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522
+ + LPA + SA +G L V +P
Sbjct: 111 SEIPEEEEIYRTIKLPATVKEENASAKFE-NGVLSVILP 148
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 41.8 bits (99), Expect = 6e-05
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 434 PPADWVKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGE--PEHPDNPWGV-- 489
PP D V A + G +E+++ + L+I E P +
Sbjct: 25 PPVDMY-----EEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 490 -TPFKKVVSLPARIDPHL-TSAVVTLHGQLFVRVP 522
+KV+ LP + S +G L +R+P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYE-NGVLTIRIP 113
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 39.8 bits (92), Expect = 0.001
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 443 VQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVT-PFKKVVSLPAR 501
+ + F+VY V EE+ +++D +LV+ + ++ + + LP
Sbjct: 107 GKDGRLHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPS 165
Query: 502 IDPHLTSAVVTLHGQLFVRVPFEQTD 527
+D + A +T L + P + +
Sbjct: 166 VDRNHIQATITTDDVLVIEAPVNEPN 191
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 440 KINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGE----PEHPDNPWGVT----- 490
+++ + T + A +PG+ +EEV+V+ + LV+SGE E ++ W
Sbjct: 45 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 104
Query: 491 PFKKVVSLPARIDPHLTSAVVTLHGQLFVRVP 522
F + L A + +G L V VP
Sbjct: 105 KFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVP 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.014
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 11/32 (34%)
Query: 120 ESS-KVEAPDNSPVESKAGHAAASKAEASTAE 150
++S K+ A D++P A A KA T E
Sbjct: 26 QASLKLYADDSAP-------ALAIKA---TME 47
Score = 30.3 bits (67), Expect = 0.96
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 382 DKNHLSLQKCEKQLK-----SRGLIKRKKPSYMELAVKAA 416
+K +L+K + LK S P+ LA+KA
Sbjct: 18 EKQ--ALKKLQASLKLYADDS-------APA---LAIKAT 45
Score = 28.4 bits (62), Expect = 3.4
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 10 KNEAPGEDLPGSSKSTEQDAPPAEALPA 37
K + L S K D+ PA A+ A
Sbjct: 19 KQAL--KKLQASLKLYADDSAPALAIKA 44
Score = 28.0 bits (61), Expect = 5.5
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 26/52 (50%)
Query: 51 VKNLESHSTPLQEPPSISLDVLGDTSSADPDIQPSAYASVKAKTLEVPNTIE 102
+K L++ S+ L YA A L + T+E
Sbjct: 22 LKKLQA---------SLKL-----------------YADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.018
Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 29/151 (19%)
Query: 384 NHLSLQKCEKQLKSRGLIKRKKPSYME-LAVK----AARTKTSKSQLDVAVVDLGPPADW 438
+H+ + E Q + + ++ + ++++ K ++ SK ++D ++
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDA--- 60
Query: 439 VKINVQRTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSL 498
V T F L + Q + + V E + + ++P K
Sbjct: 61 ----VSGTLRLF-------WTLLSK---QEEMVQKFV--EEVLRINYKFLMSPIKTEQRQ 104
Query: 499 PARIDPHLTSAVVTLH--GQLFVR--VPFEQ 525
P+ + L+ Q+F + V Q
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 4.8
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 225 DEGSESGTEEEQSSFMEELENFFRDRS 251
D S+ +E + ++LE + + +S
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQS 128
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 28.8 bits (65), Expect = 5.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 152 HADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELK 188
H DS+ ++ FKV A + N A ++ K
Sbjct: 157 HGDSVDKVA------DGFKVVARSGNIVAGIANESKK 187
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP
synthetase, GMP biosynthesis, glutamine
amidotransferase, ligase, cytoplasm; 2.40A {Homo
sapiens}
Length = 218
Score = 28.3 bits (64), Expect = 5.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 152 HADSIAELPAESEAKPSFKVQAATPNRNAAPSDTELK 188
H DS+ ++ FKV A + N A ++ K
Sbjct: 152 HGDSVDKVA------DGFKVVARSGNIVAGIANESKK 182
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant;
winged helix domain, RNA polymerase III C39 subunit,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 26.7 bits (59), Expect = 6.0
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 380 IKDKNHL---SLQKCEKQLKSRGLIKRKKPSYMELAVKAARTKTS 421
++ K++L + K K L+S+ LIK AVK+ +S
Sbjct: 59 VRYKSNLPLTEINKILKNLESKKLIK---------AVKSVSGPSS 94
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 28.1 bits (63), Expect = 6.5
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 90 VKAKTLEVPNTIE-DTTAET--DTILSSNSELPESSKVEAPDNSPVESKAGHAAASKAEA 146
VK +P IE D + D++ +S+ +LP ++ + + +
Sbjct: 126 VKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAA----VVPPEDVE 181
Query: 147 STAEPHADSIAELPAESEAKPS 168
AE A +AE + K
Sbjct: 182 KLAEEAAAEVAEPEVIKKGKEE 203
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural
genomics, winged helix domain, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.5.85
Length = 91
Score = 26.3 bits (58), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 371 GSDEISDPIIKDKNHL---SLQKCEKQLKSRGLIK-------RKKPSYM 409
G+ I ++ K++L + K K L+S+ LIK KK YM
Sbjct: 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.126 0.357
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,517,504
Number of extensions: 440634
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 41
Length of query: 527
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 429
Effective length of database: 3,965,535
Effective search space: 1701214515
Effective search space used: 1701214515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.0 bits)