BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009740
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NRX|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Non-Motor Microtubule Binding Protein
pdb|3NRX|B Chain B, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Non-Motor Microtubule Binding Protein
Length = 130
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 339 KDILDKVEKWKHGAEEEQW--LDDYEK---DENRYSAGRGAHKNLKRAEKARILISK-LP 392
K++ + V+KW EE W ++E+ D NR++ RG NL + EK R + K LP
Sbjct: 13 KELFEGVQKW-----EETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLP 64
Query: 393 SVVENLIAKVKAWEAEKRIPFLYDKVPLLSILEE 426
+ E L A+++ WE E F+ + + + E
Sbjct: 65 KLEEELKARIELWEQEHSKAFMVNGQKFMEYVAE 98
>pdb|3NRY|A Chain A, Insights Into Anti-Parallel Microtubule Crosslinking By
Prc1, A Conserved Microtubule Binding Protein
Length = 130
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
Query: 339 KDILDKVEKWKHGAEEEQW--LDDYEK---DENRYSAGRGAHKNLKRAEKARILISK-LP 392
K++ + V+KW EE W ++E+ D NR++ RG NL + EK R + K LP
Sbjct: 13 KELFEGVQKW-----EETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKXLP 64
Query: 393 SVVENLIAKVKAWEAEKRIPF 413
+ E L A+++ WE E F
Sbjct: 65 KLEEELKARIELWEQEHSKAF 85
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 116 LTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVH 168
+T+K L E + L +K+L L + ++ HE L+ +FLE + VH
Sbjct: 268 ITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVH 320
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 116 LTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVH 168
+T+K L E + L +K+L L + ++ HE L+ +FLE + VH
Sbjct: 259 ITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVH 311
>pdb|1YNM|A Chain A, Crystal Structure Of Restriction Endonuclease Hinp1i
pdb|2FKC|A Chain A, Crystal Form I Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ion
pdb|2FKC|B Chain B, Crystal Form I Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ion
pdb|2FKH|B Chain B, Crystal Form Ii Of Pre-Reactive Complex Of Restriction
Endonuclease Hinp1i With Cognate Dna And Calcium Ions
pdb|2FL3|A Chain A, Binary Complex Of Restriction Endonuclease Hinp1i With
Cognate Dna
pdb|2FLC|A Chain A, Post-Reactive Complex Of Restriction Endonuclease Hinp1i
With Nicked Cognate Dna And Magnesium Ions
Length = 247
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 331 AKEEALSRKDILDKVEKWKHGAEEEQWL 358
AK+ + KDI D+ E WK +E + WL
Sbjct: 11 AKDGFKNEKDIADRFENWKENSEAQDWL 38
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 134 EKNLRLQKVNNNLSTIH--ELSLVLSINFLETVNEVHPSLSDSKNVQSKSIS 183
++N R VN L IH E +LV FL+TV E + SLSDS++V I+
Sbjct: 33 KENGRENVVNGTLGAIHDEEGNLV----FLKTVKEEYLSLSDSEHVGYAPIA 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,822,750
Number of Sequences: 62578
Number of extensions: 452602
Number of successful extensions: 1026
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 17
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)