Query 009740
Match_columns 527
No_of_seqs 256 out of 514
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 16:46:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4302 Microtubule-associated 100.0 5E-103 1E-107 845.2 55.2 517 1-525 40-569 (660)
2 PF03999 MAP65_ASE1: Microtubu 100.0 3.9E-81 8.5E-86 694.4 14.6 441 1-466 5-468 (619)
3 KOG4302 Microtubule-associated 99.9 5E-20 1.1E-24 200.7 46.1 355 30-408 15-386 (660)
4 PF03999 MAP65_ASE1: Microtubu 99.9 5.4E-24 1.2E-28 237.3 12.4 361 8-451 84-457 (619)
5 PF12128 DUF3584: Protein of u 95.1 5.5 0.00012 48.9 25.2 54 179-232 765-821 (1201)
6 KOG0996 Structural maintenance 94.5 5.8 0.00013 47.2 21.8 102 182-293 932-1035(1293)
7 TIGR03185 DNA_S_dndD DNA sulfu 93.5 17 0.00038 41.5 28.0 40 255-294 480-519 (650)
8 TIGR00606 rad50 rad50. This fa 91.4 46 0.001 41.4 32.5 309 6-352 424-742 (1311)
9 PF15070 GOLGA2L5: Putative go 90.3 37 0.00081 38.6 24.3 111 16-144 37-147 (617)
10 PRK04778 septation ring format 89.5 41 0.00089 37.9 27.9 264 60-348 119-409 (569)
11 KOG0161 Myosin class II heavy 89.3 70 0.0015 41.0 23.6 42 6-48 1047-1088(1930)
12 PF10146 zf-C4H2: Zinc finger- 88.6 18 0.00039 35.9 15.0 108 8-160 1-109 (230)
13 PRK11637 AmiB activator; Provi 87.1 48 0.0011 35.8 19.2 92 56-150 43-134 (428)
14 TIGR03185 DNA_S_dndD DNA sulfu 86.9 63 0.0014 37.0 35.3 242 56-345 205-454 (650)
15 PF08317 Spc7: Spc7 kinetochor 86.8 4.2 9E-05 42.4 9.9 131 9-162 164-298 (325)
16 KOG0933 Structural maintenance 85.8 85 0.0018 37.4 22.3 231 12-273 745-976 (1174)
17 PRK02224 chromosome segregatio 85.8 83 0.0018 37.2 27.5 351 10-408 208-559 (880)
18 KOG1029 Endocytic adaptor prot 85.3 34 0.00074 39.3 16.1 71 20-93 435-505 (1118)
19 TIGR02169 SMC_prok_A chromosom 85.1 99 0.0021 37.5 25.9 25 250-274 971-995 (1164)
20 PRK03918 chromosome segregatio 83.5 1E+02 0.0022 36.4 26.5 41 182-222 656-696 (880)
21 PHA02562 46 endonuclease subun 80.7 31 0.00068 38.3 14.2 18 186-203 387-404 (562)
22 PF12128 DUF3584: Protein of u 80.7 1.5E+02 0.0033 36.6 29.9 44 114-157 766-812 (1201)
23 KOG4674 Uncharacterized conser 78.1 2.1E+02 0.0045 36.6 32.1 188 2-219 566-772 (1822)
24 TIGR00634 recN DNA repair prot 77.3 1.1E+02 0.0024 34.4 17.2 86 60-159 301-394 (563)
25 KOG4674 Uncharacterized conser 77.1 2.2E+02 0.0048 36.4 33.4 143 7-159 695-838 (1822)
26 PF02183 HALZ: Homeobox associ 77.0 14 0.0003 27.0 6.5 43 4-47 2-44 (45)
27 PF10498 IFT57: Intra-flagella 76.7 75 0.0016 33.7 14.7 37 12-48 217-253 (359)
28 KOG0977 Nuclear envelope prote 76.5 80 0.0017 35.3 15.2 88 12-99 96-187 (546)
29 cd09237 V_ScBro1_like Protein- 76.5 1.1E+02 0.0023 32.3 33.9 195 8-216 6-229 (356)
30 COG5185 HEC1 Protein involved 74.1 1.4E+02 0.003 32.6 23.6 42 256-297 534-578 (622)
31 PF00038 Filament: Intermediat 73.6 1.1E+02 0.0024 31.2 29.3 29 8-36 11-39 (312)
32 PF11995 DUF3490: Domain of un 72.5 22 0.00048 32.9 8.2 98 209-312 3-122 (161)
33 PF05557 MAD: Mitotic checkpoi 72.3 20 0.00043 41.5 10.0 37 116-152 500-536 (722)
34 PRK11637 AmiB activator; Provi 71.8 1.5E+02 0.0033 32.0 19.3 29 186-214 199-227 (428)
35 PF06705 SF-assemblin: SF-asse 68.9 1.3E+02 0.0028 30.0 14.4 74 72-157 166-239 (247)
36 TIGR02169 SMC_prok_A chromosom 68.4 2.8E+02 0.006 33.6 31.7 36 120-155 799-834 (1164)
37 COG1340 Uncharacterized archae 66.2 1.6E+02 0.0036 30.2 23.2 123 14-139 19-151 (294)
38 KOG0977 Nuclear envelope prote 64.3 2.5E+02 0.0053 31.6 26.4 139 62-216 94-232 (546)
39 cd09234 V_HD-PTP_like Protein- 63.4 2E+02 0.0042 30.1 27.7 140 9-150 73-219 (337)
40 KOG4643 Uncharacterized coiled 62.0 3.5E+02 0.0076 32.5 31.2 82 11-94 260-342 (1195)
41 PRK04778 septation ring format 62.0 2.7E+02 0.0059 31.3 28.9 54 18-71 129-183 (569)
42 cd08915 V_Alix_like Protein-in 61.6 2.1E+02 0.0045 29.8 32.5 190 8-216 6-221 (342)
43 PF12325 TMF_TATA_bd: TATA ele 60.8 1.2E+02 0.0027 26.9 10.4 27 12-38 34-60 (120)
44 cd09238 V_Alix_like_1 Protein- 60.3 2.2E+02 0.0048 29.8 35.6 195 8-216 6-223 (339)
45 cd09234 V_HD-PTP_like Protein- 58.8 2.3E+02 0.0051 29.5 33.0 192 7-216 5-219 (337)
46 KOG0250 DNA repair protein RAD 58.0 4.1E+02 0.009 32.1 17.3 171 7-213 294-464 (1074)
47 TIGR03007 pepcterm_ChnLen poly 57.8 2.9E+02 0.0062 30.2 22.6 140 15-157 204-348 (498)
48 TIGR00606 rad50 rad50. This fa 57.6 4.8E+02 0.01 32.7 35.1 107 10-144 181-287 (1311)
49 smart00787 Spc7 Spc7 kinetocho 56.2 2.5E+02 0.0055 29.1 17.4 21 179-199 265-285 (312)
50 PF13514 AAA_27: AAA domain 55.9 4.7E+02 0.01 32.1 32.3 88 13-100 685-776 (1111)
51 PRK09039 hypothetical protein; 55.9 2.7E+02 0.0058 29.3 19.4 132 56-198 112-251 (343)
52 PF10498 IFT57: Intra-flagella 55.3 59 0.0013 34.5 8.8 95 63-157 216-311 (359)
53 KOG0964 Structural maintenance 55.0 4.5E+02 0.0097 31.6 24.0 125 318-448 857-1000(1200)
54 PF05667 DUF812: Protein of un 54.4 3.8E+02 0.0081 30.6 16.2 202 187-415 330-534 (594)
55 KOG0972 Huntingtin interacting 54.4 1.1E+02 0.0023 31.4 9.8 88 13-100 225-327 (384)
56 cd07627 BAR_Vps5p The Bin/Amph 53.6 2.2E+02 0.0048 27.6 16.3 36 258-293 171-213 (216)
57 PF03915 AIP3: Actin interacti 52.4 3.4E+02 0.0074 29.5 18.0 171 118-348 150-321 (424)
58 KOG0995 Centromere-associated 52.3 3.9E+02 0.0084 30.1 28.0 43 185-227 453-495 (581)
59 KOG0994 Extracellular matrix g 52.0 5.4E+02 0.012 31.7 21.2 39 185-223 1591-1629(1758)
60 PF11629 Mst1_SARAH: C termina 51.4 23 0.00049 26.3 3.4 25 322-346 22-47 (49)
61 COG4026 Uncharacterized protei 51.1 2.2E+02 0.0048 28.1 11.0 46 184-229 169-214 (290)
62 COG4026 Uncharacterized protei 51.0 2.3E+02 0.0049 28.0 11.0 65 33-97 107-172 (290)
63 PF08317 Spc7: Spc7 kinetochor 50.6 3.1E+02 0.0067 28.5 25.7 84 16-99 69-163 (325)
64 PF10239 DUF2465: Protein of u 50.2 1.6E+02 0.0034 30.7 10.8 81 33-141 130-210 (318)
65 cd09236 V_AnPalA_UmRIM20_like 49.9 3.3E+02 0.0072 28.6 35.2 193 8-216 6-223 (353)
66 KOG2199 Signal transducing ada 49.7 1.9E+02 0.004 31.1 11.0 95 277-424 60-154 (462)
67 PF13543 KSR1-SAM: SAM like do 49.0 1.9E+02 0.0042 26.1 9.7 52 179-237 75-126 (129)
68 KOG4438 Centromere-associated 48.1 3.9E+02 0.0085 28.9 22.3 39 7-49 127-165 (446)
69 PF15066 CAGE1: Cancer-associa 47.8 1.6E+02 0.0035 32.1 10.4 69 192-274 404-472 (527)
70 KOG0964 Structural maintenance 47.1 5.9E+02 0.013 30.7 31.5 76 260-348 907-982 (1200)
71 COG1579 Zn-ribbon protein, pos 45.9 3.2E+02 0.007 27.3 16.8 117 30-157 11-127 (239)
72 COG1196 Smc Chromosome segrega 45.4 6.8E+02 0.015 30.9 30.8 12 323-334 946-957 (1163)
73 PF07106 TBPIP: Tat binding pr 41.5 1E+02 0.0022 28.7 7.3 45 114-158 67-111 (169)
74 PF11995 DUF3490: Domain of un 40.9 25 0.00055 32.6 2.9 28 280-310 3-30 (161)
75 COG1196 Smc Chromosome segrega 40.8 7.9E+02 0.017 30.4 31.8 32 14-45 673-704 (1163)
76 PF00038 Filament: Intermediat 39.3 4.3E+02 0.0093 26.9 21.8 188 11-223 57-254 (312)
77 PF10168 Nup88: Nuclear pore c 38.8 7E+02 0.015 29.1 24.3 36 179-214 679-714 (717)
78 PHA02562 46 endonuclease subun 38.6 5.8E+02 0.013 28.2 30.1 82 11-98 163-244 (562)
79 COG1340 Uncharacterized archae 38.3 4.7E+02 0.01 27.0 18.3 37 121-157 160-196 (294)
80 cd07664 BAR_SNX2 The Bin/Amphi 36.7 4.4E+02 0.0095 26.2 20.8 184 57-294 33-230 (234)
81 smart00806 AIP3 Actin interact 34.9 6.2E+02 0.014 27.5 27.7 171 118-348 154-325 (426)
82 PF06818 Fez1: Fez1; InterPro 34.7 3.2E+02 0.007 26.6 9.4 41 120-160 11-51 (202)
83 PRK05771 V-type ATP synthase s 34.2 2.5E+02 0.0055 32.1 10.3 202 133-360 46-264 (646)
84 COG1579 Zn-ribbon protein, pos 33.2 5.1E+02 0.011 25.9 16.3 44 56-99 85-128 (239)
85 PF15070 GOLGA2L5: Putative go 32.4 8.1E+02 0.018 28.0 23.0 104 28-145 3-106 (617)
86 PF11365 DUF3166: Protein of u 32.3 2.1E+02 0.0046 24.4 6.9 35 3-37 10-44 (96)
87 COG3883 Uncharacterized protei 32.1 5.6E+02 0.012 26.0 13.7 145 58-218 29-181 (265)
88 cd00890 Prefoldin Prefoldin is 32.1 3.4E+02 0.0073 23.5 9.0 101 118-218 5-127 (129)
89 smart00787 Spc7 Spc7 kinetocho 31.4 6.1E+02 0.013 26.3 24.3 83 17-99 65-158 (312)
90 PF04065 Not3: Not1 N-terminal 30.5 5.6E+02 0.012 25.5 13.8 68 334-408 76-144 (233)
91 cd00584 Prefoldin_alpha Prefol 30.3 3.8E+02 0.0081 23.5 12.6 94 5-98 3-125 (129)
92 PF13514 AAA_27: AAA domain 30.2 1.1E+03 0.024 28.9 39.1 200 11-225 560-776 (1111)
93 KOG2398 Predicted proline-seri 30.1 8.8E+02 0.019 27.7 15.7 46 183-228 7-58 (611)
94 KOG4398 Predicted coiled-coil 30.0 2.9E+02 0.0062 28.2 8.4 21 259-279 69-89 (359)
95 PF10212 TTKRSYEDQ: Predicted 29.9 4.2E+02 0.009 29.5 10.4 75 6-87 440-514 (518)
96 PF06160 EzrA: Septation ring 29.8 8.4E+02 0.018 27.4 26.1 282 58-404 113-432 (560)
97 PF09726 Macoilin: Transmembra 29.6 9.5E+02 0.021 28.0 14.5 122 8-156 538-659 (697)
98 KOG2150 CCR4-NOT transcription 28.7 8.9E+02 0.019 27.3 15.5 68 334-408 76-144 (575)
99 PF08614 ATG16: Autophagy prot 28.6 1.5E+02 0.0033 28.3 6.3 84 56-156 70-153 (194)
100 PF02994 Transposase_22: L1 tr 28.6 1.5E+02 0.0032 31.6 6.7 37 185-221 151-187 (370)
101 KOG4460 Nuclear pore complex, 28.5 8.9E+02 0.019 27.3 20.0 121 66-213 611-737 (741)
102 PRK10869 recombination and rep 28.1 9E+02 0.019 27.2 24.9 192 60-347 164-369 (553)
103 COG4942 Membrane-bound metallo 27.9 8.1E+02 0.018 26.6 18.9 94 60-160 38-131 (420)
104 TIGR02231 conserved hypothetic 27.9 6E+02 0.013 28.1 11.7 89 10-99 73-170 (525)
105 PF07083 DUF1351: Protein of u 27.6 5.8E+02 0.013 24.8 18.8 94 123-227 93-186 (215)
106 TIGR02168 SMC_prok_B chromosom 25.9 1.2E+03 0.026 28.0 29.0 16 391-406 970-985 (1179)
107 PF05008 V-SNARE: Vesicle tran 25.9 1.5E+02 0.0033 23.6 4.9 67 10-76 5-77 (79)
108 PF10147 CR6_interact: Growth 25.6 4.3E+02 0.0093 26.0 8.7 52 377-428 119-188 (217)
109 PF11902 DUF3422: Protein of u 25.5 8.5E+02 0.018 26.5 11.8 92 10-104 197-288 (420)
110 PF10398 DUF2443: Protein of u 24.6 3.8E+02 0.0083 21.8 7.8 53 278-337 11-68 (79)
111 PLN03188 kinesin-12 family pro 24.6 1.4E+03 0.031 28.4 23.4 101 187-292 969-1079(1320)
112 KOG0995 Centromere-associated 23.7 1.1E+03 0.024 26.7 26.4 69 25-93 231-306 (581)
113 PRK10361 DNA recombination pro 23.0 8.7E+02 0.019 26.9 11.4 97 60-156 81-184 (475)
114 PHA03418 hypothetical E4 prote 22.9 1.8E+02 0.0039 28.7 5.4 40 184-226 191-230 (230)
115 cd00632 Prefoldin_beta Prefold 22.8 4.8E+02 0.01 22.1 8.9 98 119-218 6-103 (105)
116 PF06705 SF-assemblin: SF-asse 22.3 7.6E+02 0.017 24.4 18.9 81 117-216 151-232 (247)
117 PRK05244 Der GTPase activator; 22.0 1.1E+02 0.0023 29.2 3.7 49 2-50 100-149 (177)
118 PF05557 MAD: Mitotic checkpoi 21.7 8.5E+02 0.018 28.2 11.8 136 10-158 505-646 (722)
119 TIGR02168 SMC_prok_B chromosom 21.4 1.5E+03 0.032 27.3 35.6 35 11-45 687-721 (1179)
120 PF07957 DUF3294: Protein of u 21.3 2.5E+02 0.0055 27.5 6.1 39 183-221 2-40 (216)
121 PF09789 DUF2353: Uncharacteri 20.9 9.7E+02 0.021 25.0 27.2 149 8-156 9-177 (319)
122 KOG0161 Myosin class II heavy 20.8 2E+03 0.044 28.7 34.7 208 10-232 1113-1348(1930)
123 COG4942 Membrane-bound metallo 20.7 1.1E+03 0.024 25.6 18.0 77 5-85 43-119 (420)
124 PF05130 FlgN: FlgN protein; 20.7 5.5E+02 0.012 22.1 9.1 84 17-100 39-128 (143)
125 PF04220 YihI: Der GTPase acti 20.5 1.2E+02 0.0026 28.7 3.6 50 2-51 101-151 (169)
126 PHA03419 E4 protein; Provision 20.5 2.5E+02 0.0055 27.0 5.8 42 182-226 159-200 (200)
127 COG0497 RecN ATPase involved i 20.4 1.3E+03 0.027 26.2 22.8 30 316-345 339-368 (557)
128 PF12761 End3: Actin cytoskele 20.3 8E+02 0.017 23.8 10.9 60 24-87 134-194 (195)
No 1
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=4.9e-103 Score=845.25 Aligned_cols=517 Identities=46% Similarity=0.679 Sum_probs=469.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHH
Q 009740 1 MLLELEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSR----GKGTLKQQISAIRSILEDLRSKK 76 (527)
Q Consensus 1 ~~~~le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~----~~~tL~eql~~l~~~le~Lrk~K 76 (527)
||++||++|+++|+++|+++...+++|+++|+.++++++.||++||+++.... +++||++++..|.+.++.|+++|
T Consensus 40 ~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk 119 (660)
T KOG4302|consen 40 KLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQK 119 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999987643 66999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 77 EQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 77 ~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~L 156 (527)
++|+++|.+++.||+.||.+||+.... .....+|+.|+|+++|++|+.+|.+|++||..|+++|.+++.+|+.||.+|
T Consensus 120 ~eR~~ef~el~~qie~l~~~l~g~~~~--~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 120 DERRAEFKELYHQIEKLCEELGGPEDL--PSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccC--CcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998211 113456889999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhh
Q 009740 157 SINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVT 236 (527)
Q Consensus 157 g~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~ 236 (527)
|++|..+++++||+|.+..+.++++||++||++|..++..|+++|.+|++++++|+.+|.+|||+|++|++||..|.+++
T Consensus 198 g~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ts~Ee~~~f~~~t 277 (660)
T KOG4302|consen 198 GLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLDTSDEERQRFVHVT 277 (660)
T ss_pred CCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHcccc
Confidence 99999999999999999888788999999999999999999999999999999999999999999999999999999986
Q ss_pred hccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCC
Q 009740 237 SLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVD 316 (527)
Q Consensus 237 ~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~ 316 (527)
++|+|.+++||.++|..++.||.||++||+++||+||+++|.||++||+.+||+.+..........++++|.+|
T Consensus 278 ------~~e~t~~~~ls~d~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d 351 (660)
T KOG4302|consen 278 ------ESEATEPNSLSLDIIEQVEKEVDRLEQLKASNMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTED 351 (660)
T ss_pred ------HHHhhccccccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999995333344566778899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhccchHHHH
Q 009740 317 LSDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISKLPSVVE 396 (527)
Q Consensus 317 ~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~KlP~l~~ 396 (527)
+.++|+.++.+|.++|+++.+||+|+++|++|+++|+++.||++|++|.|||+++||||++|+||||+|++|+|||+|++
T Consensus 352 ~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa~EeE~~lee~n~D~nR~~~~Rg~h~lLkreekar~~vsKlP~~~~ 431 (660)
T KOG4302|consen 352 VLELLENIDNLIKKYKEEALSRKEILERVEKWESACEEESWLEEYNRDSNRYNAGRGAHLLLKREEKARKLVSKLPKMVE 431 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccchhhhHhccccchhHHHHHHHHHHHhhhCchhhH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC----
Q 009740 397 NLIAKVKAWEAEKRIPFLYDKVPLLSILEEYTAQCQKREEEKRRCREQKRLQEQFAAEQEAIYGSRPSIKKPLCQS---- 472 (527)
Q Consensus 397 ~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~~~eKe~ek~~~r~~kk~~~q~~~e~e~~~gs~p~~~~~~~~~---- 472 (527)
.|+.++.+||.++|+||+|||+||++|+++|..||++||++|+|+|++||.++|+.++++..|||+|||++|.+.+
T Consensus 432 ~L~~k~~~wE~e~~~~FL~~g~~ll~m~~e~~~~r~~ke~~k~r~rd~kk~s~q~~~~~~~~~~sk~sp~~p~s~rk~~~ 511 (660)
T KOG4302|consen 432 ALTAKVTAWEEEKGRPFLVDGVPLLEMLEEYEEHRQEKEQEKARQRDQKKTSGQLKPEQEGRYGSKPSPSKPNSPRKNRG 511 (660)
T ss_pred HHHHHHHHHHHhcCCceeecCccHHHHHHHHHHHHHHHHHHHHhcccccccccccCccccccccCCCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987732
Q ss_pred CCCC---CCCCCCcCCcccCCCCCc--ccCCCcccccccccCCCCCcccccCCCCCCC
Q 009740 473 TSTN---TMAGTPVGRRFTTPSGRH--VISGGKERRESIRVTKPIPLNYVALPKDDSV 525 (527)
Q Consensus 473 ~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (527)
.+++ ..+++|+.|+++.++..+ .....+......+..+++|.|||+..+.++.
T Consensus 512 ~~t~~~~~~~~~ps~~~~s~~~~~~s~~~~~~~~s~r~~~~~st~p~n~~~~~~~~~l 569 (660)
T KOG4302|consen 512 RSTPPNGSLSKTPSKRPLSGGNSAASTQNRTTPLSPRRLRASSTTPANKVARQKIESL 569 (660)
T ss_pred CCCCCCCCCCCCCccCcCCCCCCCCCcccCCCCCCcccccCCCCCCchhhhccccccc
Confidence 2222 145677777776543211 1111111112335567889999999988764
No 2
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=100.00 E-value=3.9e-81 Score=694.44 Aligned_cols=441 Identities=38% Similarity=0.546 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CCCCC---------CCCCCHHH
Q 009740 1 MLLELEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGE-----------HASFS---------RGKGTLKQ 60 (527)
Q Consensus 1 ~~~~le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge-----------~~~~~---------~~~~tL~e 60 (527)
||+++|++|+++|+++|++++..++.|++.|+.+.+|++.|++++|. .++.. ..++||++
T Consensus 5 ~~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~L~~ 84 (619)
T PF03999_consen 5 MVVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMPLKE 84 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhcccccchh
Confidence 78999999999999999999999999999999999999999544443 22211 23378999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCc-HHHHHHHHHHHHHHHHHHHHHH
Q 009740 61 QISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLT-VKKLGELKTHLRELQNEKNLRL 139 (527)
Q Consensus 61 ql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS-~~~L~~L~~~L~~Lq~Ek~~R~ 139 (527)
++..|.+.++.|++++.+|+++|..++.+++.||++||..+.... ...++..+++ .++|+.|+.+|+.|++||+.|+
T Consensus 85 ~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~--~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~ 162 (619)
T PF03999_consen 85 QLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLN--PFDIDESDLPSLEELEELRQHLQRLQEEKERRL 162 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCc--cccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987665332 1234555655 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCChh-hhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 140 QKVNNNLSTIHELSLVLSINFL-ETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKL 218 (527)
Q Consensus 140 ~kv~el~~~I~~L~~~Lg~d~~-~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~L 218 (527)
++|.+++..|+.||.+||+++. ........++. .++.+++||+++|++|...++.|+++|.+|..++++|+.+|..|
T Consensus 163 ~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~--~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 163 EEVRELREEIISLMEELGIDPERTSFEKDLLSYS--EDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccchhhccccc--cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997 44332222222 24568999999999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChh
Q 009740 219 WDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVHMDVD 298 (527)
Q Consensus 219 W~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e 298 (527)
|++|++|.+||+.|... ++++|.++|+++++||+||+++|+++|++||.++|.+|++|||+|||+++
T Consensus 241 W~~L~~~~ee~~~F~~~-------------~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~e 307 (619)
T PF03999_consen 241 WNRLDVPEEEREAFLEE-------------NSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEE 307 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHhhc-------------cCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999665 57889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhh
Q 009740 299 SDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNL 378 (527)
Q Consensus 299 ~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~L 378 (527)
+|.+ |.+++++ .++++||+.||.||++|+++|.++++||++|++|.++|+++.|||+|++|||||+ ||||| |
T Consensus 308 er~~---F~~~~~d--~~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~-~RGg~--L 379 (619)
T PF03999_consen 308 ERQA---FTPFYID--SYTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESSKDPSRLN-NRGGH--L 379 (619)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCGG---------H
T ss_pred HHHH---HHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhc-ccccH--H
Confidence 8865 5554543 3779999999999999999999999999999999999999999999999999999 99995 8
Q ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009740 379 KRAEKARILISK-LPSVVENLIAKVKAWEAEKRIPFLYDKVPLLSILEEYTAQCQKREEEKRRCREQKRLQEQFAAEQEA 457 (527)
Q Consensus 379 lreEK~Rk~v~K-lP~l~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~~~eKe~ek~~~r~~kk~~~q~~~e~e~ 457 (527)
|+|||+|++|+| ||+|++.|+.+|.+||.++|+||+|||++|+++|++|......++.+|.+.+.+|+.+.+..+++++
T Consensus 380 LkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~pFlv~G~~~le~l~e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~~~ 459 (619)
T PF03999_consen 380 LKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKPFLVDGERYLEYLEEYEEQWERKREEKERSKQQKKLQNQKQTEQEM 459 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--EETTEEHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEcCccHHHHHHHHHHHHHhhhhhhccccccCCCCCCCccccCC
Confidence 999999999998 9999999999999999999999999999999999877666667777777778888888888899999
Q ss_pred ccCCCCCCC
Q 009740 458 IYGSRPSIK 466 (527)
Q Consensus 458 ~~gs~p~~~ 466 (527)
.|||+|+|.
T Consensus 460 ~~~s~~s~~ 468 (619)
T PF03999_consen 460 PYGSKPSPA 468 (619)
T ss_dssp HC-------
T ss_pred CCCCccccC
Confidence 999987653
No 3
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.91 E-value=5e-20 Score=200.75 Aligned_cols=355 Identities=16% Similarity=0.214 Sum_probs=268.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCC-CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 009740 30 SLADAEAEIACLVSALGEHASFSRGK-GTLK-QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSV 107 (527)
Q Consensus 30 ~ia~~~~El~~L~~eLge~~~~~~~~-~tL~-eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~ 107 (527)
.......+|+.||+++|++....+.- .-|. +++..|...+++....+..-.+++...++++..||..|+..+..+.
T Consensus 15 t~~~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-- 92 (660)
T KOG4302|consen 15 TCGNLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-- 92 (660)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc--
Confidence 33445556999999999987643211 2222 5678899999999999999999999999999999999999887543
Q ss_pred ccccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHH
Q 009740 108 DAQVD-ECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDT 186 (527)
Q Consensus 108 ~~~~d-~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~ 186 (527)
..+ ....-.+.|..+...+..|.+.|++|...|.++...|..||..||.++. . .++ ...+..+||+..
T Consensus 93 --~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~--~--~~~-----~~~D~~dlsl~k 161 (660)
T KOG4302|consen 93 --ISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPED--L--PSF-----LIADESDLSLEK 161 (660)
T ss_pred --cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C--Ccc-----cccCcccccHHH
Confidence 112 2234568999999999999999999999999999999999999998821 1 111 123467899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcc--cCCChHHHHHHHHHHH
Q 009740 187 IARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSM--LGCLALDVIEQMEVEV 264 (527)
Q Consensus 187 L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~--~~~LS~~~I~~~e~Ev 264 (527)
|+.|+..+..|+++|..|++++..+...|..||..||++ |..+...+++|..+-+. +.++|.++|+.+..-|
T Consensus 162 Leelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~------~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v 235 (660)
T KOG4302|consen 162 LEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLD------FSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMV 235 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------cccchhhhhhhhhhccCcccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 55555566777766664 6889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhh--hhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009740 265 EHLNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILI--SLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDIL 342 (527)
Q Consensus 265 ~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~--~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il 342 (527)
+.|...|.+++..+ ...+..+.+||+.|.+|++++..|.+.. .+...| .-+.+++...+.|+.+|.+...++ |=
T Consensus 236 ~~l~~~k~qr~~kl-~~l~~~~~~LWn~l~ts~Ee~~~f~~~t~~e~t~~~-~ls~d~I~~ve~Ev~Rl~qlK~s~--mK 311 (660)
T KOG4302|consen 236 KKLKEEKKQRLQKL-QDLRTKLLELWNLLDTSDEERQRFVHVTESEATEPN-SLSLDIIEQVEKEVDRLEQLKASN--MK 311 (660)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCHHHHHHHccccHHHhhccc-cccHHHHHHHHHHHHHHHHHHHHh--HH
Confidence 99999999999996 8999999999999999999887654422 122233 478999999999999999999988 66
Q ss_pred HHHHHHHHhhHHHHH-HHHhcCC--cc-ccc-----cCCCChhhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Q 009740 343 DKVEKWKHGAEEEQW-LDDYEKD--EN-RYS-----AGRGAHKNLKRAEKARILISK-LPSVVENLIAKVKAWEAE 408 (527)
Q Consensus 343 ~~vekw~~l~~e~~~-Le~~~~D--~~-R~~-----~~RG~h~~LlreEK~Rk~v~K-lP~l~~~L~~~l~~wE~e 408 (527)
++|.+-..=++ +.| +--|+-+ .. ||. .+...+..|+-.--..+.-.| ---+-+.+..++..|+..
T Consensus 312 eli~k~r~Ele-el~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~keea~srk~il~~ve~W~sa 386 (660)
T KOG4302|consen 312 ELIEKKRSELE-ELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYKEEALSRKEILERVEKWESA 386 (660)
T ss_pred HHHHHHHHHHH-HHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666444332 233 2222221 11 222 134455555554111111112 333456677788888864
No 4
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=99.90 E-value=5.4e-24 Score=237.31 Aligned_cols=361 Identities=19% Similarity=0.253 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFS------RGKGTLKQQISAIRSILEDLRSKKEQRIK 81 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~------~~~~tL~eql~~l~~~le~Lrk~K~eR~~ 81 (527)
+|+..++..|+.....+...++.|..+..++..||..||..+... ..++|-.+++..+..+++.|+.++..|+.
T Consensus 84 ~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~ 163 (619)
T PF03999_consen 84 EQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLE 163 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778899999999999999999999999999999999764321 12355458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCC-CCCcc-ccc----cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 82 EFSGIQFQIAQISSEIAGNGQ-SINSV-DAQ----VDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLV 155 (527)
Q Consensus 82 ef~~l~~qi~~L~~eL~~~~~-~~~~~-~~~----~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~ 155 (527)
+|..+..+|..||.+||.++. ..... ..+ .+..+||.+.|+.|...+..|+.+|..|..++..+...|..||+.
T Consensus 164 ~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~LW~~ 243 (619)
T PF03999_consen 164 EVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEELWNR 243 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999885 22111 111 234679999999999999999999999999999999999999999
Q ss_pred hCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHhHHH
Q 009740 156 LSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQK-LQSLGNALIKLWDLLETPVNEQRKVDH 234 (527)
Q Consensus 156 Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~k-i~~l~~~l~~LW~~L~~p~eEr~~F~~ 234 (527)
|+++.+....++ ..+.++|.++|+.|..++++|+++|.++++. |...+.+|.+||+.|.+++++|..|..
T Consensus 244 L~~~~ee~~~F~---------~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~ 314 (619)
T PF03999_consen 244 LDVPEEEREAFL---------EENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTP 314 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hCCCHHHHHHHh---------hccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999877654332 1356899999999999999999999999999 799999999999999999999999998
Q ss_pred hhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCC
Q 009740 235 VTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGN 314 (527)
Q Consensus 235 ~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~ 314 (527)
.+. .+.+.++++.++.||.||++....+ +=|++.-.++..+|..+..-.+.......|. +
T Consensus 315 ~~~------------d~~~E~lL~~hE~Ei~~Lk~~~~~~--k~Il~~v~k~~~l~~~~~~Le~~~~D~~Rl~----~-- 374 (619)
T PF03999_consen 315 FYI------------DSYTEELLELHEEEIERLKEEYESR--KPILELVEKWESLWEEMEELEESSKDPSRLN----N-- 374 (619)
T ss_dssp --------------------------------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-CCGG--------
T ss_pred Hhc------------ccchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcChhhhc----c--
Confidence 874 4456899999999999999999986 2234666778999986543332221111222 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhccchHH
Q 009740 315 VDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISKLPSV 394 (527)
Q Consensus 315 ~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~KlP~l 394 (527)
-...||..-+..-.-.+.....-+.|...|..|+. + ...|--|+ |- .
T Consensus 375 -RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE~---------e-~g~pFlv~---G~--~----------------- 421 (619)
T PF03999_consen 375 -RGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWEE---------E-HGKPFLVD---GE--R----------------- 421 (619)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-HTS--EET---TE--E-----------------
T ss_pred -cccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---------H-cCCeEEEc---Cc--c-----------------
Confidence 11335555544444456777777888888888832 1 12232233 33 1
Q ss_pred HHHHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009740 395 VENLIAKVKAWEAEKRIPFLYDKVPLLSILEEYTAQCQKREEEKRRCREQKRLQEQF 451 (527)
Q Consensus 395 ~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~~~eKe~ek~~~r~~kk~~~q~ 451 (527)
+...+. ++.++|..++++|+..+...+.+++.+.+.
T Consensus 422 ---~le~l~------------------e~~~~~~~~~~~k~~~~~~k~~~~~~~~~~ 457 (619)
T PF03999_consen 422 ---YLEYLE------------------EYEEQWERKREEKERSKQQKKLQNQKQTEQ 457 (619)
T ss_dssp ---HHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHH------------------HHHHHHHhhhhhhccccccCCCCCCCcccc
Confidence 111111 566899999999999888877666666553
No 5
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.07 E-value=5.5 Score=48.87 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCHHHHHhH
Q 009740 179 SKSISNDTIARLTGVIHLLKQEKQ---QRLQKLQSLGNALIKLWDLLETPVNEQRKV 232 (527)
Q Consensus 179 ~~~lS~~~L~~L~~~l~~L~~~K~---~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F 232 (527)
+.++.+.+|..|+..+..|+..-. ++...+.+|..-+..+|..++--.+.+...
T Consensus 765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l 821 (1201)
T PF12128_consen 765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPEL 821 (1201)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 578888999999999998886544 344458899999999999866444443333
No 6
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.51 E-value=5.8 Score=47.17 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHH
Q 009740 182 ISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQME 261 (527)
Q Consensus 182 lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e 261 (527)
.++.++.+++..+..|+.+...-..++..|...+..+=.++.--..+...+......+..+ +.++...++
T Consensus 932 ~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~----------~~~~k~~~e 1001 (1293)
T KOG0996|consen 932 TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKE----------LRDLKSELE 1001 (1293)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 4677888888888888888888888888888888777776655444555555544433322 345555555
Q ss_pred HHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhc
Q 009740 262 VEVEHLNEYKASK--MKELVFKRQHELEEIYKGV 293 (527)
Q Consensus 262 ~Ev~RLe~lK~~~--mk~li~k~r~eLeelWd~~ 293 (527)
..=+...++|..+ |+..+++.+.+|.++=...
T Consensus 1002 ~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~ 1035 (1293)
T KOG0996|consen 1002 NIKKSENELKAERIDIENKLEAINGELNEIESKI 1035 (1293)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhh
Confidence 5555666666655 4555666666666654433
No 7
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=93.46 E-value=17 Score=41.48 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 009740 255 DVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVH 294 (527)
Q Consensus 255 ~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~ 294 (527)
..++.++.=...|..++.......+..+..++.+++..+.
T Consensus 480 ~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~ 519 (650)
T TIGR03185 480 RAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555566666666666666666666666666553
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.35 E-value=46 Score=41.40 Aligned_cols=309 Identities=15% Similarity=0.116 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 009740 6 EQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKK--EQRIKEF 83 (527)
Q Consensus 6 e~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K--~eR~~ef 83 (527)
.|.+++-.+..+.............++....++..+-.+|+.-......--.+...+..+...++.+.... .....++
T Consensus 424 ~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 503 (1311)
T TIGR00606 424 KQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEV 503 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34555555555555555555666666666666667777776533221000112233344444443333221 1122222
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCChhh
Q 009740 84 SGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHE-LSLVLSINFLE 162 (527)
Q Consensus 84 ~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~-L~~~Lg~d~~~ 162 (527)
...+.++..|-..+..- +...-...........+.-+++++..+...+..+...... +...+| ++..
T Consensus 504 ~~~~~~~~~le~~~~~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~ 571 (1311)
T TIGR00606 504 KSLQNEKADLDRKLRKL-----------DQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFPN 571 (1311)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC
Confidence 22222222222222211 0011233444556667777777777777766666665533 333334 3310
Q ss_pred hhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccc
Q 009740 163 TVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSS 242 (527)
Q Consensus 163 ~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s 242 (527)
. |. -...+..+...+..++.......+.+..+-.++..+=..+.--..+.+.+.....
T Consensus 572 ~-----~~------------l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~----- 629 (1311)
T TIGR00606 572 K-----KQ------------LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF----- 629 (1311)
T ss_pred c-----HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 0 11 1334444444444444444443333443333333333333333333333332221
Q ss_pred cchhcccCCChHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCC
Q 009740 243 VDEVSMLGCLALDVIEQMEVEVEHLNEYKA------SKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVD 316 (527)
Q Consensus 243 ~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~------~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~ 316 (527)
+..++..+ .++|..++.++.....-.. ..+..+|.....+=...|..|+=+-+.......|..-+.+. ++
T Consensus 630 --~~~~~~~~-~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~-~~ 705 (1311)
T TIGR00606 630 --DVCGSQDE-ESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSK-LR 705 (1311)
T ss_pred --cCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHH-Hh
Confidence 00111222 3355666655555442211 12333333331121225555544433322223454333321 12
Q ss_pred h-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 009740 317 L-SDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGA 352 (527)
Q Consensus 317 ~-e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~ 352 (527)
+ -+.+...+..+..++..+..-..+-..|..|..+.
T Consensus 706 ~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~ 742 (1311)
T TIGR00606 706 LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742 (1311)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 2 33466667777777777777777766777776665
No 9
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.32 E-value=37 Score=38.59 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 16 KVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISS 95 (527)
Q Consensus 16 kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~ 95 (527)
.|......|......|..++..|+.|-..+..++.+..+.+|. +....+...++.|+++++.-..++......-+.|+.
T Consensus 37 ev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~ps-e~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~ 115 (617)
T PF15070_consen 37 EVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPS-EVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSR 115 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888889999999999999998877554455554 344566667777777665555444443322232322
Q ss_pred HhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 96 EIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNN 144 (527)
Q Consensus 96 eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~e 144 (527)
... --..+|.++...+..++....+|...+..
T Consensus 116 L~~-----------------EqEerL~ELE~~le~~~e~~~D~~kLLe~ 147 (617)
T PF15070_consen 116 LNQ-----------------EQEERLAELEEELERLQEQQEDRQKLLEQ 147 (617)
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 12456667777777777666655554433
No 10
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.55 E-value=41 Score=37.88 Aligned_cols=264 Identities=14% Similarity=0.204 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCccccccCCCCCcHHHHHHHHHHHHHHH------
Q 009740 60 QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQ-SINSVDAQVDECDLTVKKLGELKTHLRELQ------ 132 (527)
Q Consensus 60 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~-~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq------ 132 (527)
+++..+...|++|...-.+=..++..++..-+.+-..|-...+ +|+ . -+.-..+|+.+......+.
T Consensus 119 ~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~----a---~~~le~~l~~~e~~f~~f~~l~~~G 191 (569)
T PRK04778 119 EDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP----A---LDELEKQLENLEEEFSQFVELTESG 191 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc----h---HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344455555555555555555666666666666665554433 221 1 1223445555555554443
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCC----CHHHHHHHHHHHHH---
Q 009740 133 ---------NEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSI----SNDTIARLTGVIHL--- 196 (527)
Q Consensus 133 ---------~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~l----S~~~L~~L~~~l~~--- 196 (527)
......+..+...+..|=.|+..+...|...+.++...+.+.. .+.+.+ -+..|..|+..+..
T Consensus 192 d~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~-~~gy~~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 192 DYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELV-EEGYHLDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 2334455566666777767777776655444433321111110 011222 25667777777776
Q ss_pred -HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHH--
Q 009740 197 -LKQEKQQRLQK-LQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKA-- 272 (527)
Q Consensus 197 -L~~~K~~R~~k-i~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~-- 272 (527)
|....-..... +..+...|..|.+.|.--..-+.........+.. .-.-.......+..|+++|.+=..
T Consensus 271 ~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~-------~l~~~~e~~~~l~~Ei~~l~~sY~l~ 343 (569)
T PRK04778 271 LLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD-------FLEHAKEQNKELKEEIDRVKQSYTLN 343 (569)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHccccC
Confidence 55444444444 7788899999999986554433332222111100 000023344455555555544322
Q ss_pred HhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009740 273 SKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKW 348 (527)
Q Consensus 273 ~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw 348 (527)
..--..+.....+|.++-..+.- ....+......-+++...++.-..++++.-..+..|.+.|...
T Consensus 344 ~~e~~~~~~lekeL~~Le~~~~~----------~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~L 409 (569)
T PRK04778 344 ESELESVRQLEKQLESLEKQYDE----------ITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGL 409 (569)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH----------HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112233334444444332221 1111222223456666666666666777777777777777654
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.27 E-value=70 Score=41.05 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009740 6 EQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEH 48 (527)
Q Consensus 6 e~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~ 48 (527)
|-+| -..+..++..+..+..+-..++....|+..|-+.++..
T Consensus 1047 e~el-~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e 1088 (1930)
T KOG0161|consen 1047 EGEL-KDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDE 1088 (1930)
T ss_pred HHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444 44555566677777788888888888888887777764
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.62 E-value=18 Score=35.86 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQ 87 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 87 (527)
|||.=.|.|+.+..+.+++|++.++.+..|- ..|..|....+.|..+|....+++..+.
T Consensus 1 e~i~~ir~K~~~lek~k~~i~~e~~~~e~ee---------------------~~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 1 EKIKEIRNKTLELEKLKNEILQEVESLENEE---------------------KCLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777789999999999999999998887764 3456778888888999988888998888
Q ss_pred HHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCh
Q 009740 88 FQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLV-LSINF 160 (527)
Q Consensus 88 ~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~-Lg~d~ 160 (527)
.+|..|=+.|... ....+..+..+..+..|+. .+.+.|..+-.. +|++.
T Consensus 60 ~DIn~lE~iIkqa-----------------~~er~~~~~~i~r~~eey~-------~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 60 QDINTLENIIKQA-----------------ESERNKRQEKIQRLYEEYK-------PLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCCCC
Confidence 8888877776442 2233345555555555554 444555555555 88764
No 13
>PRK11637 AmiB activator; Provisional
Probab=87.06 E-value=48 Score=35.78 Aligned_cols=92 Identities=11% Similarity=0.199 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
..+.+++..+..+++.+.+...+-..+...+..++..+-..|......... .-.+-.-...++..++..|..++.+.
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~---~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRE---TQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777766666655566666666666666655443211100 00001123455666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 009740 136 NLRLQKVNNNLSTIH 150 (527)
Q Consensus 136 ~~R~~kv~el~~~I~ 150 (527)
..+...+...+....
T Consensus 120 ~~~~~~l~~rlra~Y 134 (428)
T PRK11637 120 AAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666654444444443
No 14
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.91 E-value=63 Score=36.96 Aligned_cols=242 Identities=12% Similarity=0.167 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
..+..++..+...+..+..+...-.+++..++.++..+...+..-..... ....-..+..+.+...+..++.+.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~------~~GG~~~~~r~~Le~ei~~le~e~ 278 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFR------SEGGDLFEEREQLERQLKEIEAAR 278 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcchHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777776666666666666666665543211000 001123455667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 009740 136 NLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQS-LGNA 214 (527)
Q Consensus 136 ~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~-l~~~ 214 (527)
.++.+.+..+.+. . -++.+....|..+...+.....-+ +.+.+.+ +...
T Consensus 279 ~e~~~~l~~l~~~-------~---------------------~p~~l~~~ll~~~~~q~~~e~~~~--~~~~~~~~l~~~ 328 (650)
T TIGR03185 279 KANRAQLRELAAD-------P---------------------LPLLLIPNLLDSTKAQLQKEEQSQ--QNQLTQEELEER 328 (650)
T ss_pred HHHHHHHHHHhcc-------c---------------------CCHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 7666644333211 1 145566677888877777665333 3333433 3366
Q ss_pred HHHHHHHc---CCCHHHHHhHHHhhhc-cccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHH
Q 009740 215 LIKLWDLL---ETPVNEQRKVDHVTSL-VSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKEL---VFKRQHELE 287 (527)
Q Consensus 215 l~~LW~~L---~~p~eEr~~F~~~~~~-i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~l---i~k~r~eLe 287 (527)
...||..+ ..+....+........ ..+...+...+-+++...+..+..-++.+..-....+..+ +.+...+|.
T Consensus 329 ~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~ 408 (650)
T TIGR03185 329 DKELLESLPKLALPAEHVKEIAAELAEIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELA 408 (650)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccccccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66777666 5555444333332211 1111112222344556656666655555442222233333 245666777
Q ss_pred HHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009740 288 EIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKV 345 (527)
Q Consensus 288 elWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~v 345 (527)
++=.++.-.++.- .+. ...+-+..++.+|..++..+.....-++..
T Consensus 409 ~l~~~l~~~~~~e----~i~--------~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 409 EVDKKISTIPSEE----QIA--------QLLEELGEAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHhcCCChH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665544321 011 112335555566666655555554444433
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.82 E-value=4.2 Score=42.40 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 9 CLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQF 88 (527)
Q Consensus 9 cl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~ 88 (527)
..+++...++.+......+....+.+..++..|-....+..... .+.|..++..|..+...-..+.+.+.+++.
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D------~~eL~~lr~eL~~~~~~i~~~k~~l~el~~ 237 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCD------QEELEALRQELAEQKEEIEAKKKELAELQE 237 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666666666666655544422111 144555555555555555555555555555
Q ss_pred HHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCChhh
Q 009740 89 QIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLR----LQKVNNNLSTIHELSLVLSINFLE 162 (527)
Q Consensus 89 qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R----~~kv~el~~~I~~L~~~Lg~d~~~ 162 (527)
++..+-..+.. ...+..++...|..+++..... ...|..+...+..|....|..+..
T Consensus 238 el~~l~~~i~~-----------------~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~ 298 (325)
T PF08317_consen 238 ELEELEEKIEE-----------------LEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVS 298 (325)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEE
Confidence 55555554422 1234445666666666555432 345777778888888888876644
No 16
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.79 E-value=85 Score=37.36 Aligned_cols=231 Identities=14% Similarity=0.162 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 12 IYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGK-GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQI 90 (527)
Q Consensus 12 vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~-~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 90 (527)
.|..-|++....=......+..+..++..|-..+...-..+... -.+...++.+...+++-.+.-+.|.++|..++-+.
T Consensus 745 ~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~ 824 (1174)
T KOG0933|consen 745 ELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEH 824 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444333333334455555555555555555433221111 12223345555666666666667777777777777
Q ss_pred HHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCC
Q 009740 91 AQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPS 170 (527)
Q Consensus 91 ~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~ps 170 (527)
..+-.++......... .......-...+..+...+...+.+...-+..+......+..+-.+++.-....- .
T Consensus 825 e~l~~e~~~~k~~l~~---~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e--~--- 896 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQ---LEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQE--K--- 896 (1174)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHH--H---
Confidence 7777766543210000 0000011123333444444444444444444444444444444333321100000 0
Q ss_pred CCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccC
Q 009740 171 LSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLG 250 (527)
Q Consensus 171 l~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~ 250 (527)
+ .+........+..|...+.+++.+++.-..++..+..+..- =.+|...|......+
T Consensus 897 -~----~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~w-------i~~ek~~fgk~gt~y----------- 953 (1174)
T KOG0933|consen 897 -C----LSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEW-------IGDEKRLFGKKGTDY----------- 953 (1174)
T ss_pred -H----HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccc-------hhHHHHhhcCCCCcc-----------
Confidence 0 01233455678899999999999999888888887777652 137888888764322
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 009740 251 CLALDVIEQMEVEVEHLNEYKAS 273 (527)
Q Consensus 251 ~LS~~~I~~~e~Ev~RLe~lK~~ 273 (527)
++...+...+..++.+|+..+..
T Consensus 954 Df~~~~p~~are~l~~Lq~k~~~ 976 (1174)
T KOG0933|consen 954 DFESYDPHEAREELKKLQEKKEK 976 (1174)
T ss_pred ccccCCHhHHHHHHHHhhHHHHH
Confidence 22333445566666666655443
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=85.79 E-value=83 Score=37.22 Aligned_cols=351 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
|.-++..+++.......+.+.+..+..++..+-..+..-......-.++...+..+...+..+.....+...++..+...
T Consensus 208 l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~ 287 (880)
T PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRER 287 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccC
Q 009740 90 IAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHP 169 (527)
Q Consensus 90 i~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~p 169 (527)
+..+-..+..-.............-..-...+..-...+...-.+....+..+..-...+..-...|.-.....-.
T Consensus 288 ~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~---- 363 (880)
T PRK02224 288 LEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE---- 363 (880)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhccc
Q 009740 170 SLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSML 249 (527)
Q Consensus 170 sl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~ 249 (527)
.+..+...+..+...-..-...+..+...+..+=..+.....+.+.+......+
T Consensus 364 ----------------~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l---------- 417 (880)
T PRK02224 364 ----------------EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL---------- 417 (880)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH----------
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHH
Q 009740 250 GCLALDVIEQMEVEVEHLNEYKASKMKELVFKRQHEL-EEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQI 328 (527)
Q Consensus 250 ~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eL-eelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI 328 (527)
..-++.+..++..++..... ....+......| ...|-.|+-+.+.. ....|+.-+.........-++.++.++
T Consensus 418 ----~~~~~~l~~~~~~~~~~~~~-~~~~l~~~~~~l~~~~Cp~C~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l 491 (880)
T PRK02224 418 ----REERDELREREAELEATLRT-ARERVEEAEALLEAGKCPECGQPVEGS-PHVETIEEDRERVEELEAELEDLEEEV 491 (880)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCCCCCcCCCc-chhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 009740 329 AKAKEEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISKLPSVVENLIAKVKAWEAE 408 (527)
Q Consensus 329 ~~lke~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~KlP~l~~~L~~~l~~wE~e 408 (527)
..++..+..-+.+.+.-.+...+......+++ -+.. .+-+-+....++..+-.-++.|...+..|+.+
T Consensus 492 ~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~----------~~~~--~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~ 559 (880)
T PRK02224 492 EEVEERLERAEDLVEAEDRIERLEERREDLEE----------LIAE--RRETIEEKRERAEELRERAAELEAEAEEKREA 559 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=34 Score=39.32 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 20 TRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQI 93 (527)
Q Consensus 20 ~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L 93 (527)
.+..+++|.+.+..+..+++.|...|+.-... -+|-++.++.+..+.|.+..+..+-...+.+++..+..+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~---~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVD---ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667778888888888888877777654321 134444444444444444444444444444444444433
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.07 E-value=99 Score=37.48 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHh
Q 009740 250 GCLALDVIEQMEVEVEHLNEYKASK 274 (527)
Q Consensus 250 ~~LS~~~I~~~e~Ev~RLe~lK~~~ 274 (527)
+......|+.++.-..+++.++.+.
T Consensus 971 ~~vN~~Ai~~~~~~~~~~~~l~~q~ 995 (1164)
T TIGR02169 971 EPVNMLAIQEYEEVLKRLDELKEKR 995 (1164)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777776664
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=83.46 E-value=1e+02 Score=36.37 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 009740 182 ISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLL 222 (527)
Q Consensus 182 lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L 222 (527)
++...+..+...+..++.....-...+..+...+..|...+
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i 696 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666666666666666666666554
No 21
>PHA02562 46 endonuclease subunit; Provisional
Probab=80.75 E-value=31 Score=38.32 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009740 186 TIARLTGVIHLLKQEKQQ 203 (527)
Q Consensus 186 ~L~~L~~~l~~L~~~K~~ 203 (527)
.++.+...+..+..++..
T Consensus 387 ~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 387 ELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666555544
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.69 E-value=1.5e+02 Score=36.55 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC
Q 009740 114 CDLTVKKLGELKTHLRELQNEK---NLRLQKVNNNLSTIHELSLVLS 157 (527)
Q Consensus 114 ~dlS~~~L~~L~~~L~~Lq~Ek---~~R~~kv~el~~~I~~L~~~Lg 157 (527)
.++....|..|+..+..|.++. ..+...|.++..-+...|..+.
T Consensus 766 ~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 766 KGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3456778888888888888665 5567778888888888877644
No 23
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.14 E-value=2.1e+02 Score=36.61 Aligned_cols=188 Identities=20% Similarity=0.250 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CC--CCC------CCC--CCHHHHHHHHHHHH
Q 009740 2 LLELEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGE--HA--SFS------RGK--GTLKQQISAIRSIL 69 (527)
Q Consensus 2 ~~~le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge--~~--~~~------~~~--~tL~eql~~l~~~l 69 (527)
+..+.++-++-...+|.+..+......+.|..+..+...+-.-+.. +. ..+ ..+ +++...+..+...+
T Consensus 566 ~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~l 645 (1822)
T KOG4674|consen 566 LQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENEL 645 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHH
Confidence 4556677777777788888888887777777777777666322221 11 111 111 33466677777777
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 009740 70 EDLRSKKEQRIK----EFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKN---LRLQKV 142 (527)
Q Consensus 70 e~Lrk~K~eR~~----ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~---~R~~kv 142 (527)
+.++.++.+++. +|..++.++..|...++--.. ...++.+++..|+..|..+..+.. .|-..+
T Consensus 646 e~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~----------~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l 715 (1822)
T KOG4674|consen 646 ESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKN----------ELNLAKEKLENLEKNLELTKEEVETLEERNKNL 715 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766654 556677777777777765322 246788999999999999998888 555544
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 143 NNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLW 219 (527)
Q Consensus 143 ~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW 219 (527)
..++..-.+....+.- ....++.-+..|...+..|..++.-+...-..|......|.
T Consensus 716 ~~~i~~~~q~~~~~s~--------------------eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~ 772 (1822)
T KOG4674|consen 716 QSTISKQEQTVHTLSQ--------------------ELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLS 772 (1822)
T ss_pred HHHHHHHHHHHHHHHH--------------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333222221 11235667888888888888888777666555555444443
No 24
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=77.32 E-value=1.1e+02 Score=34.36 Aligned_cols=86 Identities=13% Similarity=0.200 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHH---
Q 009740 60 QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKN--- 136 (527)
Q Consensus 60 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~--- 136 (527)
+.+..+...+..++..+..--..+.++......+..+|..-.. +...++.++..+..++++..
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~--------------~~~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD--------------SDESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC--------------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665554445666777777777777754221 22344455555555554443
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhCCC
Q 009740 137 -----LRLQKVNNNLSTIHELSLVLSIN 159 (527)
Q Consensus 137 -----~R~~kv~el~~~I~~L~~~Lg~d 159 (527)
.|.+....+...|...+..||++
T Consensus 367 ~~Ls~~R~~~a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 367 VALSLIRRKAAERLAKRVEQELKALAME 394 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46667778889999999999987
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.09 E-value=2.2e+02 Score=36.38 Aligned_cols=143 Identities=15% Similarity=0.250 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 7 QDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGI 86 (527)
Q Consensus 7 ~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 86 (527)
.+-++.|++.++........|...|......++.+..+|--.. ..+..+...|+.|+.++.-+...+..+
T Consensus 695 ~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~----------~k~~~le~ev~~LKqE~~ll~~t~~rL 764 (1822)
T KOG4674|consen 695 EKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSAN----------EKLEKLEAELSNLKQEKLLLKETEERL 764 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999886543 678899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009740 87 QFQIAQISSEIAGNGQSINSVDAQVDEC-DLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSIN 159 (527)
Q Consensus 87 ~~qi~~L~~eL~~~~~~~~~~~~~~d~~-dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d 159 (527)
..+...||.+...-......+-..-+.. ..=.+.-..+..++..|..+...=..++.+-++.++.+-..+..+
T Consensus 765 ~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~ 838 (1822)
T KOG4674|consen 765 SQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQ 838 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999988754321000000000000 001122233444455555444444444555555555555555443
No 26
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.99 E-value=14 Score=27.01 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009740 4 ELEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGE 47 (527)
Q Consensus 4 ~le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge 47 (527)
|||++| ++.++--|.....-+.|.+..+.+.+++..|-..|+.
T Consensus 2 QlE~Dy-~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDY-DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 799999 8889999999999999999999999999999887764
No 27
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=76.72 E-value=75 Score=33.71 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009740 12 IYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEH 48 (527)
Q Consensus 12 vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~ 48 (527)
-||..++++...+..+-..+.+....|..|-.+++-.
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~ 253 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKT 253 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999888864
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.53 E-value=80 Score=35.27 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CC-CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 12 IYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHAS--FS-RGK-GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQ 87 (527)
Q Consensus 12 vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~--~~-~~~-~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 87 (527)
-.|+-|+++...++.+...|..+..|+..+-.-+-...- .. +.+ ....-.+..+...+..++.....--.+...++
T Consensus 96 ~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk 175 (546)
T KOG0977|consen 96 TARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK 175 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999887765543311 00 011 11123344555555555555555555555566
Q ss_pred HHHHHHHHHhcc
Q 009740 88 FQIAQISSEIAG 99 (527)
Q Consensus 88 ~qi~~L~~eL~~ 99 (527)
.++..|...|..
T Consensus 176 ~en~rl~~~l~~ 187 (546)
T KOG0977|consen 176 AENSRLREELAR 187 (546)
T ss_pred HHhhhhHHHHHH
Confidence 666666665554
No 29
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=76.49 E-value=1.1e+02 Score=32.34 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCC-----------C--CCHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASF-----SRG-----------K--GTLKQQISAIRSIL 69 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~-----~~~-----------~--~tL~eql~~l~~~l 69 (527)
+...+|....++.-. +. ...+..+-.++..+...|+.|... +.| + .++...+..+.+..
T Consensus 6 ea~S~YsE~ka~lvr--~e-~~~~e~a~~~~~~~L~~lnLP~sL~~l~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~l~ 82 (356)
T cd09237 6 EKESLYSEEKAKLLR--AE-VERVEVANEEYASFLEYLNLPKLLVDLKERFEGENELMEIVSGLKSSSVDSQLELLRPQS 82 (356)
T ss_pred HHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHcCCcHHHHHHhhhcCCchhHHHHHHhccCCCcchhHHHhHHHH
Confidence 566778777665443 33 478889999999999999998431 001 0 12223344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 70 EDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTV---KKLGELKTHLRELQNEKNLRLQKVNNNL 146 (527)
Q Consensus 70 e~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~---~~L~~L~~~L~~Lq~Ek~~R~~kv~el~ 146 (527)
........+-...+..=..++..+-..+|.. .... ....++. .++..|+..|..-.. -=.++....
T Consensus 83 ~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~-Wtr~------~S~~~~~~l~~~~~k~~~~L~~A~~----SD~~l~~~~ 151 (356)
T cd09237 83 ASWVNEIDSSYNDLDEEMKEIEKMRKKILAK-WTQS------PSSSLTASLREDLVKLKKSLVEASA----SDEKLFSLV 151 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc------cchhhhHHHHHHHHHHHHHHHHHHh----hHHHHHHHH
Confidence 4444444444444555555555555666552 2111 0112222 333334333333221 223455666
Q ss_pred HHHHHHHHHhCCChhhhhhcc-cCC-------CCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 147 STIHELSLVLSINFLETVNEV-HPS-------LSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 147 ~~I~~L~~~Lg~d~~~~~~~v-~ps-------l~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
..+......|+.+.......+ .|+ +.+....+...=-...+..|+..+..|+.+|.+|...+++|..+++
T Consensus 152 ~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~ 229 (356)
T cd09237 152 DPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIH 229 (356)
T ss_pred HHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777766554322111 122 2111000000001346899999999999999999999999988766
No 30
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=74.12 E-value=1.4e+02 Score=32.62 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHhcCCCh
Q 009740 256 VIEQMEVEVEHLNEYKASK---MKELVFKRQHELEEIYKGVHMDV 297 (527)
Q Consensus 256 ~I~~~e~Ev~RLe~lK~~~---mk~li~k~r~eLeelWd~~~~~~ 297 (527)
-++.++.|+..|.-+-... ...+|.+.+-++.++-..|.+--
T Consensus 534 E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r 578 (622)
T COG5185 534 EIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKR 578 (622)
T ss_pred HHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677888887777655444 35667777778887777665543
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=73.60 E-value=1.1e+02 Score=31.21 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEA 36 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~ 36 (527)
.+|..|=.+|-..+.....|...|..+..
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 47788888888877777766665555443
No 32
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=72.49 E-value=22 Score=32.93 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHhHHHhhhccc-----------------cccchh----c-ccCCChHHHHHHHHHHHHH
Q 009740 209 QSLGNALIKLWDLLETPVNEQRKVDHVTSLVS-----------------SSVDEV----S-MLGCLALDVIEQMEVEVEH 266 (527)
Q Consensus 209 ~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~-----------------~s~~e~----~-~~~~LS~~~I~~~e~Ev~R 266 (527)
+..+.+|.+||+.|++|--.|..|.-.+.|=. .+.... . ++..--..++.++..|-+-
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER~~ 82 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRREREM 82 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHHHH
Confidence 45678999999999999988887754433110 000000 0 0111122355555555444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccC
Q 009740 267 LNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDS 312 (527)
Q Consensus 267 Le~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s 312 (527)
|-..-..++ ...|.+.++-+.+++.+..+-.-++...+=+
T Consensus 83 L~k~m~~rl------s~eere~ly~kWgI~l~sK~RrlQL~~~LWt 122 (161)
T PF11995_consen 83 LAKQMQKRL------SREEREELYKKWGIPLDSKQRRLQLANRLWT 122 (161)
T ss_pred HHHHHHHhC------CHHHHHHHHHhcCCCCcchHHHHHHHHHHcC
Confidence 422222211 2467889999999999887666666655544
No 33
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.34 E-value=20 Score=41.54 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 116 LTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHEL 152 (527)
Q Consensus 116 lS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L 152 (527)
.+.+++..|+..+..|+.+...=...+..+-..|..+
T Consensus 500 ~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 500 SLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999998776666666666666543
No 34
>PRK11637 AmiB activator; Provisional
Probab=71.79 E-value=1.5e+02 Score=31.97 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 186 TIARLTGVIHLLKQEKQQRLQKLQSLGNA 214 (527)
Q Consensus 186 ~L~~L~~~l~~L~~~K~~R~~ki~~l~~~ 214 (527)
.+..+......|+..+.++...+..|...
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~ 227 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESS 227 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544443
No 35
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=68.87 E-value=1.3e+02 Score=29.95 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 72 LRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHE 151 (527)
Q Consensus 72 Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~ 151 (527)
+..++..|-..+..+.+.+..++..-... +..+..--+++|...-..|..|...|...=..++..|..
T Consensus 166 i~~Ek~~Re~~~~~l~~~le~~~~~~~~~------------~e~f~~~v~~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~ 233 (247)
T PF06705_consen 166 IEKEKNTRESKLSELRSELEEVKRRREKG------------DEQFQNFVLEEIAALKNALALESQEREQSDDDIVQALNH 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34445555555555555555555422111 122344455666666667777777777776677777776
Q ss_pred HHHHhC
Q 009740 152 LSLVLS 157 (527)
Q Consensus 152 L~~~Lg 157 (527)
+...|.
T Consensus 234 yt~~lQ 239 (247)
T PF06705_consen 234 YTKALQ 239 (247)
T ss_pred HHHHHH
Confidence 666554
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=68.36 E-value=2.8e+02 Score=33.64 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 120 KLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLV 155 (527)
Q Consensus 120 ~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~ 155 (527)
.+..++..+..++.+...-...+..+...+..+-..
T Consensus 799 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~e 834 (1164)
T TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444444444333
No 37
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=66.24 E-value=1.6e+02 Score=30.23 Aligned_cols=123 Identities=13% Similarity=0.205 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 14 RRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQI 93 (527)
Q Consensus 14 r~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L 93 (527)
+.-+++.+..|+.+.+.+.....+-..+-..+.+..- .-.++.++.+.+...+.+++..+.+--..+..+...+..+
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e---~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELRE---KAQELREERDEINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666555555555544443211 1145666777777777777777766666666666666666
Q ss_pred HHHhccCCCCCCcc----------ccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 009740 94 SSEIAGNGQSINSV----------DAQVDECDLTVKKLGELKTHLRELQNEKNLRL 139 (527)
Q Consensus 94 ~~eL~~~~~~~~~~----------~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~ 139 (527)
-..++.....+.+. -......++|+..=..+-..|..|.+++..+.
T Consensus 96 ~e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~ 151 (294)
T COG1340 96 KEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAK 151 (294)
T ss_pred HHHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 65555331111000 00011346677766677777777777766654
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.31 E-value=2.5e+02 Score=31.56 Aligned_cols=139 Identities=12% Similarity=0.151 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 62 ISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQK 141 (527)
Q Consensus 62 l~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~k 141 (527)
+...+..|++-.+.+..-..+|..+..++..+-.-+........ ..-.+.+.-...|..++..+..++..+..=...
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~---~~re~~~~~~~~l~~leAe~~~~krr~~~le~e 170 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERR---GAREKLDDYLSRLSELEAEINTLKRRIKALEDE 170 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh---hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 55666677777777766666777777776666655543311000 000011112445556666666666665555566
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 142 VNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 142 v~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
+..+..++..|+..|+---.. ++ +...+-.+.-.+.+.+++.|.-.+......|.+......
T Consensus 171 ~~~Lk~en~rl~~~l~~~r~~--------ld-----~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~ 232 (546)
T KOG0977|consen 171 LKRLKAENSRLREELARARKQ--------LD-----DETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKAR 232 (546)
T ss_pred HHHHHHHhhhhHHHHHHHHHH--------HH-----HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 666666666666666521100 00 011222334445555666666666655555555554443
No 39
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=63.37 E-value=2e+02 Score=30.11 Aligned_cols=140 Identities=14% Similarity=0.108 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 9 CLDIYRRKVERTRKYKADLHQSLADAEAEIA-------CLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIK 81 (527)
Q Consensus 9 cl~vyr~kV~~~~~~k~~l~q~ia~~~~El~-------~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ 81 (527)
+++.+...+++....+......+..+..-|. .+-...|..+.......+|...+..++..++....-=..-..
T Consensus 73 gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l~~ 152 (337)
T cd09234 73 TIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTELHK 152 (337)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555666666666555555555443333 344566653221112356888899999999888876655555
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 82 EFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIH 150 (527)
Q Consensus 82 ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~ 150 (527)
.|......+.-||.-...-....+.. ...+ .+.....+..|+..+..+..-+.+|...+.++...++
T Consensus 153 ~~~~~~~~l~lL~~~~~~l~~~iPs~-~~~~-~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 153 AMNLHIANLKLLAGPLDELQKKLPSP-SLLD-RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHcCcHHHHHhhCCCc-cccC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555555554221000001100 0111 1123466888999999999999999888888876654
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.99 E-value=3.5e+02 Score=32.54 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGK-GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~-~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
+-|...|++++.--+-|+.+..-++++|+.+-..=.- ...+.. .+++++++.++.+.+..+.+-++-+.+...++.+
T Consensus 260 ~fykdRveelkedN~vLleekeMLeeQLq~lrarse~--~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q 337 (1195)
T KOG4643|consen 260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQ 337 (1195)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3478888888877777888888888888887654311 111111 5666777777777777777777776666666555
Q ss_pred HHHHH
Q 009740 90 IAQIS 94 (527)
Q Consensus 90 i~~L~ 94 (527)
-..|-
T Consensus 338 ~eqL~ 342 (1195)
T KOG4643|consen 338 KEQLD 342 (1195)
T ss_pred HHHhh
Confidence 54443
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=61.98 E-value=2.7e+02 Score=31.33 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCHHHHHHHHHHHHHH
Q 009740 18 ERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGK-GTLKQQISAIRSILED 71 (527)
Q Consensus 18 ~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~-~tL~eql~~l~~~le~ 71 (527)
++....-..=...|..++.....+-..|-...|...+. -+|.++|+.+.+....
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~ 183 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQ 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 33333333334455555666666666665555432122 3444555555554443
No 42
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=61.64 E-value=2.1e+02 Score=29.84 Aligned_cols=190 Identities=9% Similarity=0.109 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-------CCCCCHHHH---------HHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFS-------RGKGTLKQQ---------ISAIRSILED 71 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~-------~~~~tL~eq---------l~~l~~~le~ 71 (527)
|.+.+|....++.- |+.+...+..+-.++...+..|+.|.... .|+. + +. +..+...++.
T Consensus 6 ea~s~Y~E~k~~lv--r~e~~~~~e~~~~~l~~~L~slnLP~sl~~l~~~~~lP~~-~-~~~~~i~~~gg~~~l~~~~~~ 81 (342)
T cd08915 6 ESASAYNERQDDYV--REHIVEPIEALNKLLNSFLAERNLPASIDDLQKPENLPDS-I-QHSQEIIEEGGLDNIEQSFKE 81 (342)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCChHHHHhcCCCCCCch-H-HHHHHHHccCcHHHHHHHHHH
Confidence 56677877766544 44456888899999999999999985421 1111 1 11 3344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHH
Q 009740 72 LRSKKEQRIKEFSGIQFQIAQ-------ISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKN---LRLQK 141 (527)
Q Consensus 72 Lrk~K~eR~~ef~~l~~qi~~-------L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~---~R~~k 141 (527)
|......-...+.+....+.. +....|.... ...+|..--..|+..+..++.-.. .-=..
T Consensus 82 l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w----------~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~ 151 (342)
T cd08915 82 LSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRW----------RRPSSDEAAKELYEKVTKLRGYLEQASNSDNE 151 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccC----------CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 555444433333333322211 1122222111 011243333444444444443221 12234
Q ss_pred HHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 142 VNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 142 v~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
+......+......|+.+...... ..|+..+. .+.. -...+..|+..+..|..++.+|...+.++..++.
T Consensus 152 l~~~~~~~~~~l~lL~~~~~~l~~-~~Ps~~~~---~~~~-~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~ 221 (342)
T cd08915 152 VLQCYESIDPNLVLLCGGYKELKA-FIPSPYPA---LDPE-VSEVVSSLRPLLNEVSELEKERERFISELEIKSR 221 (342)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHH-hCCCcccc---CCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666777788888877655432 34521110 0111 1367889999999999999999999999877654
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.77 E-value=1.2e+02 Score=26.92 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 12 IYRRKVERTRKYKADLHQSLADAEAEI 38 (527)
Q Consensus 12 vyr~kV~~~~~~k~~l~q~ia~~~~El 38 (527)
.++..+......|+.+-+.|..+..+.
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 44
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=60.34 E-value=2.2e+02 Score=29.76 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CC--CCCCHH--HHH---------HHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASF----SR--GKGTLK--QQI---------SAIRSILE 70 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~----~~--~~~tL~--eql---------~~l~~~le 70 (527)
.++.+|...+++.-... ...+..+..++....++|+.|... .. -..+|. +.. ..+...+.
T Consensus 6 ~a~s~Y~erk~~lv~~e---~~~l~~at~~~~~~L~~lnLP~sl~al~~~~~lp~sl~~~~~~~~v~~~gG~~~l~~~l~ 82 (339)
T cd09238 6 KALSKYTEMVDELIRTE---ADRLAAASDEARVALREMELPETLIALDGGASLPGDLGLDEEVEAVQISGGLAALEGELP 82 (339)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCcHHHHHhcCCCCCCCccchHHHHHHHHHcccHHHHHHHHH
Confidence 56789999888876544 488899999999999999998531 11 113333 332 24445555
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 009740 71 DLRSKKEQRIKEFSGIQFQ---IAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKN---LRLQKVNN 144 (527)
Q Consensus 71 ~Lrk~K~eR~~ef~~l~~q---i~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~---~R~~kv~e 144 (527)
++.+.+..-...+.+.... ...=|..+... +|. .+ ..-+|..--..|...+..++.-.. .-=..|..
T Consensus 83 ~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~k--yg~----rW-tr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~~ 155 (339)
T cd09238 83 RLRELRRVCTELLAAAQESLEAEATEDSAARTQ--YGT----AW-TRPPSATLTKNLWERLNRFRVNLEQAGDSDESLRR 155 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCC----CC-CCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555554433333333222 22222222211 111 01 112333333344444444432221 11123444
Q ss_pred HHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 145 NLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 145 l~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
....+......|+-+ .+....|+...+ .....+-....+..|+..+..|..++.+|...++.|.....
T Consensus 156 k~~~~~~~l~~L~~~---~~~~~~Ps~~~~-~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~ 223 (339)
T cd09238 156 RIEDAMDGMLILDDE---PAAAAAPTLRAP-MLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR 223 (339)
T ss_pred HHHHHHHHHHhcCcH---hhHhhCCCCCCc-ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555556666422 122234542210 00000012467899999999999999999887776655444
No 45
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=58.76 E-value=2.3e+02 Score=29.52 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CC--C--CCHHHHHHHHHH----------HH
Q 009740 7 QDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFS---RG--K--GTLKQQISAIRS----------IL 69 (527)
Q Consensus 7 ~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~---~~--~--~tL~eql~~l~~----------~l 69 (527)
.+.+.+|....++.-.. ....+..+..++....+.|+.|.... .+ + .+|.+.-..+.. .+
T Consensus 5 ~~a~S~Y~E~ka~lvr~---~~~~~e~~~~~l~~~L~slnLP~~~~~~~~~~~~lP~~l~~~~~~i~~~~~gi~~l~~~~ 81 (337)
T cd09234 5 HEASSLYSEEKAKLLRE---VVSEIEDKDEELDQFLSSLQLDPLNVMDMDGQFELPQDLVERCAALSVRPDTIKNLVEAM 81 (337)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCChhhhhccCCCCCCCHHHHHHHHHHhcCCcccchHHHHH
Confidence 35677888877765543 37788889999999999999986521 11 1 233333333332 22
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 70 EDLRSKKE---QRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLT---VKKLGELKTHLRELQNEKNLRLQKVN 143 (527)
Q Consensus 70 e~Lrk~K~---eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS---~~~L~~L~~~L~~Lq~Ek~~R~~kv~ 143 (527)
.+|...+. +-+.+...+......=|..+... +|.. .....++ ..++..|+..|..-.. -=..|.
T Consensus 82 ~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k--~G~~----~~S~~~~~~l~~~~~k~~~~L~~A~~----sD~~l~ 151 (337)
T cd09234 82 GELSDVYQDVEAMLNEIESLLEEEELQEKEFQEA--VGKR----GSSIAHVTELKRELKKYKEAHEKASQ----SNTELH 151 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--cCCC----CCchhhHHHHHHHHHHHHHHHHHHHH----hHHHHH
Confidence 33332222 12222222222222212222111 1100 0000111 2333344444333332 223344
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 144 NNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 144 el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
..+.........|+.+...... ..|+.... + .+-....+..|+..+..|+.++.+|...+++|+.+++
T Consensus 152 ~~~~~~~~~l~lL~~~~~~l~~-~iPs~~~~-~---~~~~~~~v~~Lr~ll~kl~~lk~eR~~l~~~Lk~k~~ 219 (337)
T cd09234 152 KAMNLHIANLKLLAGPLDELQK-KLPSPSLL-D---RPEDEAIEKELKRILNKVNEMRKQRRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHHHcCcHHHHHh-hCCCcccc-C---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555566777666543322 24442211 1 1234567999999999999999999999999887765
No 46
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=58.05 E-value=4.1e+02 Score=32.15 Aligned_cols=171 Identities=16% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 7 QDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGI 86 (527)
Q Consensus 7 ~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l 86 (527)
||-.+-|..+++.....-....+.+...+++++.+..+........ .++.+.+..++..+.++..++.+=...+...
T Consensus 294 qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei---~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~ 370 (1074)
T KOG0250|consen 294 QEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEI---EEARKDLDDLRREVNDLKEEIREIENSIRKL 370 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhc
Q 009740 87 QFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNE 166 (527)
Q Consensus 87 ~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~ 166 (527)
+..+..++..|+.-.. ........++.+....+..|+.+...=...+..+..+...+...+--.-+.
T Consensus 371 k~~~d~l~k~I~~~~~---------~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee---- 437 (1074)
T KOG0250|consen 371 KKEVDRLEKQIADLEK---------QTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE---- 437 (1074)
T ss_pred HHHHHHHHHHHHHHHH---------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Q ss_pred ccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 167 VHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGN 213 (527)
Q Consensus 167 v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~ 213 (527)
...+...+..|......-...++.|..
T Consensus 438 --------------------~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 438 --------------------KEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHh
No 47
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=57.79 E-value=2.9e+02 Score=30.25 Aligned_cols=140 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 15 RKVERTRKYKADLHQSLADAEAEIACLVSALGEHA-SFS----RGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 15 ~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~-~~~----~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
..+.+.+.........++..++.+..|-..++..+ ... ....++..++..+..++..+...+.+..-.+..++.+
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~q 283 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKRE 283 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence 34455555555666667777777788888777532 211 1225778999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009740 90 IAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLS 157 (527)
Q Consensus 90 i~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg 157 (527)
|..+-..+......... .+. . .......+..+...+..++.+...-..++..+...+..+-..++
T Consensus 284 i~~l~~~l~~~~~~~~~-~~~-~-~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 284 IAQLEEQKEEEGSAKNG-GPE-R-GEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred HHHHHHHHHhhcccccc-Ccc-c-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887543221100 000 0 11111224556666666666666555556666666665544443
No 48
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.56 E-value=4.8e+02 Score=32.69 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
++.|....+.+...+....+.|.....++..+-. .+++...++..+..+....+.-..+...+..+
T Consensus 181 ~~~y~k~~~~~~~~~k~~~~~~~~~~~~~~~~~~--------------~~~~~~~ir~~l~~~q~kie~~~~~~~~le~e 246 (1311)
T TIGR00606 181 ATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQ--------------YKEKACEIRDQITSKEAQLESSREIVKSYENE 246 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888999999999999998888888766 44566666666666666555555555555555
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 90 IAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNN 144 (527)
Q Consensus 90 i~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~e 144 (527)
+..+-..+..-. -+...+..+...+..+...+..+...+..
T Consensus 247 i~~l~~~~~~l~--------------~~~~~~~~l~~ql~~l~~~~~~~~~~~~r 287 (1311)
T TIGR00606 247 LDPLKNRLKEIE--------------HNLSKIMKLDNEIKALKSRKKQMEKDNSE 287 (1311)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554432211 12334455666666665544444443333
No 49
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.17 E-value=2.5e+02 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 009740 179 SKSISNDTIARLTGVIHLLKQ 199 (527)
Q Consensus 179 ~~~lS~~~L~~L~~~l~~L~~ 199 (527)
..+.|..-+..|...++.|+.
T Consensus 265 ~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 265 CRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 456677777777777766644
No 50
>PF13514 AAA_27: AAA domain
Probab=55.92 E-value=4.7e+02 Score=32.10 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 13 YRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGK----GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQF 88 (527)
Q Consensus 13 yr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~----~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~ 88 (527)
....+++.......+...++....+....+..+|.++...... ....+.+......+..++.+...-...+.....
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~ 764 (1111)
T PF13514_consen 685 LEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEE 764 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777788888888888889999887632111 223344444445556666666566666667777
Q ss_pred HHHHHHHHhccC
Q 009740 89 QIAQISSEIAGN 100 (527)
Q Consensus 89 qi~~L~~eL~~~ 100 (527)
++..|+..++..
T Consensus 765 ~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 765 QVAALAERLGPD 776 (1111)
T ss_pred HHHHHHHHcCcc
Confidence 777777777653
No 51
>PRK09039 hypothetical protein; Validated
Probab=55.87 E-value=2.7e+02 Score=29.30 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
.++..++..+...|..++....+-..++..++.||..|-..|+.-... -+-+..+..+.+.+++.|+.+.
T Consensus 112 ~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~----------L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 112 AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA----------LDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888888888888778888888877777776542211 1123444456666666666555
Q ss_pred HHHHH----HHHHHHHHHH-HHHHHhCCChhhhhh-c--ccCCCCCCccccCCCCCHHHHHHHHHHHHHHH
Q 009740 136 NLRLQ----KVNNNLSTIH-ELSLVLSINFLETVN-E--VHPSLSDSKNVQSKSISNDTIARLTGVIHLLK 198 (527)
Q Consensus 136 ~~R~~----kv~el~~~I~-~L~~~Lg~d~~~~~~-~--v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~ 198 (527)
+.-+. .+..+.+.+. .|...+|....-.+. + +.++ .-.++..+..|++.....|......|.
T Consensus 182 ~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~g~~~~~~~-~vlF~~gsa~L~~~~~~~L~~ia~~l~ 251 (343)
T PRK09039 182 NVALAQRVQELNRYRSEFFGRLREILGDREGIRIVGDRFVFQS-EVLFPTGSAELNPEGQAEIAKLAAALI 251 (343)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEECCEEEecC-CceeCCCCcccCHHHHHHHHHHHHHHH
Confidence 55543 3334444442 223455543221110 0 1111 011233456778777766666555443
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.26 E-value=59 Score=34.46 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 63 SAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVD-ECDLTVKKLGELKTHLRELQNEKNLRLQK 141 (527)
Q Consensus 63 ~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d-~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~k 141 (527)
..-+.+++.|+..+..=-..+.++..++.+|..+|+.....+...--.++ .-.+....+...+..+...+..+...-..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46778889999999888888999999999999988876542210000011 11234566777888888888888888888
Q ss_pred HHHHHHHHHHHHHHhC
Q 009740 142 VNNNLSTIHELSLVLS 157 (527)
Q Consensus 142 v~el~~~I~~L~~~Lg 157 (527)
|.+....+..|...|.
T Consensus 296 V~~~t~~L~~IseeLe 311 (359)
T PF10498_consen 296 VSERTRELAEISEELE 311 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888888876
No 53
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.97 E-value=4.5e+02 Score=31.62 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHH---HHHHH
Q 009740 318 SDLLSSMDDQIAKAK-------EEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAE---KARIL 387 (527)
Q Consensus 318 e~lL~~~E~eI~~lk-------e~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreE---K~Rk~ 387 (527)
+.+...|+.-+..++ ..-+.-++|....++|..+..+..-...+.+---+.. .|-+...=+|+| |+|-+
T Consensus 857 ~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~-~rk~~Ll~KreE~~ekIr~l 935 (1200)
T KOG0964|consen 857 ESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLV-RRKHMLLKKREECCEKIREL 935 (1200)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555 4444556677777777777665544322222222333 233311223442 21110
Q ss_pred hccchH---------HHHHHHHHHHHHHHHcCCceEECCccHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009740 388 ISKLPS---------VVENLIAKVKAWEAEKRIPFLYDKVPLLSILEEYTAQCQKREEEKRRCREQKRLQ 448 (527)
Q Consensus 388 v~KlP~---------l~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~lee~~~~~~eKe~ek~~~r~~kk~~ 448 (527)
.-||- =.++|..++..-..+-..-=-|| -.-++||...-.+|+.=+.|+-++++-+
T Consensus 936 -G~Lp~daf~ky~~~~~~el~kkL~~~neelk~ys~VN----KkAldQf~nfseQre~L~~R~eELd~s~ 1000 (1200)
T KOG0964|consen 936 -GVLPEDAFEKYQDKKSKELMKKLHRCNEELKGYSNVN----KKALDQFVNFSEQRESLKKRQEELDRSK 1000 (1200)
T ss_pred -CCCchHHHHHhccCCHHHHHHHHHHHHHHHhhcchhh----HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 11331 12445555555444422111122 2356899999999988888877666543
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.40 E-value=3.8e+02 Score=30.55 Aligned_cols=202 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHH
Q 009740 187 IARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEH 266 (527)
Q Consensus 187 L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~R 266 (527)
+..|+..++.+......-...+..+...+..++.....-..+...-......-.. +.+.+...+.=|.+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k-----------~~~lL~d~e~ni~k 398 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKK-----------TVELLPDAEENIAK 398 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHhcCcHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009740 267 LNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVE 346 (527)
Q Consensus 267 Le~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~ve 346 (527)
|+.+-......+ .+|..-|...-.+-.+.. +..-....+. -......+..++......+.|..-+.
T Consensus 399 L~~~v~~s~~rl-----~~L~~qWe~~R~pL~~e~--r~lk~~~~~~-------~~e~~~~~~~ik~~r~~~k~~~~e~~ 464 (594)
T PF05667_consen 399 LQALVEASEQRL-----VELAQQWEKHRAPLIEEY--RRLKEKASNR-------ESESKQKLQEIKELREEIKEIEEEIR 464 (594)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHH--HHHHHHHhhc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHH-HHHhcCCccc--cccCCCChhhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCceEE
Q 009740 347 KWKHGAEEEQW-LDDYEKDENR--YSAGRGAHKNLKRAEKARILISKLPSVVENLIAKVKAWEAEKRIPFLY 415 (527)
Q Consensus 347 kw~~l~~e~~~-Le~~~~D~~R--~~~~RG~h~~LlreEK~Rk~v~KlP~l~~~L~~~l~~wE~e~g~~Fl~ 415 (527)
.|......-.- ++.-.+|.|| |. |.=+-+-..-.|.+.-|.|+-.=+..|-..|..-...-.+.|.|
T Consensus 465 ~Kee~~~qL~~e~e~~~k~~~Rs~Yt--~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v 534 (594)
T PF05667_consen 465 QKEELYKQLVKELEKLPKDVNRSAYT--RRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTV 534 (594)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 55
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=54.36 E-value=1.1e+02 Score=31.41 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCCC-----CCHHHHHHHHHHHHHHHHHHH-------H
Q 009740 13 YRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHAS---FSRGK-----GTLKQQISAIRSILEDLRSKK-------E 77 (527)
Q Consensus 13 yr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~---~~~~~-----~tL~eql~~l~~~le~Lrk~K-------~ 77 (527)
||..|+|.+..+..+.+.+......|..|.+++--..- .++.. .+|.++......++-+++..+ .
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~ 304 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 78999999999999999999999999999887753211 11000 344444444444444444444 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC
Q 009740 78 QRIKEFSGIQFQIAQISSEIAGN 100 (527)
Q Consensus 78 eR~~ef~~l~~qi~~L~~eL~~~ 100 (527)
.|...+.++-.+|+.+-.+|...
T Consensus 305 ~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 305 SRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555543
No 56
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=53.63 E-value=2.2e+02 Score=27.64 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhc
Q 009740 258 EQMEVEVEHLNEYKASKMKELVF-------KRQHELEEIYKGV 293 (527)
Q Consensus 258 ~~~e~Ev~RLe~lK~~~mk~li~-------k~r~eLeelWd~~ 293 (527)
+.+..||.|.+.-|..=|+..+. ....++.++|..+
T Consensus 171 ~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 171 ELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888777776555544 3567888889864
No 57
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=52.38 E-value=3.4e+02 Score=29.50 Aligned_cols=171 Identities=18% Similarity=0.212 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCC-CHHHHHHHHHHHHH
Q 009740 118 VKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSI-SNDTIARLTGVIHL 196 (527)
Q Consensus 118 ~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~l-S~~~L~~L~~~l~~ 196 (527)
...+..|+..|..|..-+..-...+...++.|..-... +... ++.. .+.+=..+..-...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~----~k~~---------------s~~~~~~~~R~~~~~~k~~ 210 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKK----VKSA---------------STNASGDSNRAYMESGKKK 210 (424)
T ss_dssp ---------------------------------------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh---------------hccccccchhHHHHHHHHH
Confidence 45666777777777666665555443333333322111 1110 1111 22334445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHH
Q 009740 197 LKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMK 276 (527)
Q Consensus 197 L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk 276 (527)
|...-..-..++.+|...|..|=. -..+ .++.| +..-++.+..++.++..-=. .|+
T Consensus 211 L~~~sd~Ll~kVdDLQD~VE~LRk----------DV~~--RgvRp-----------~~~qle~v~kdi~~a~~~L~-~m~ 266 (424)
T PF03915_consen 211 LSEESDRLLTKVDDLQDLVEDLRK----------DVVQ--RGVRP-----------SPKQLETVAKDISRASKELK-KMK 266 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--H----------------HHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--cCCcC-----------CHHHHHHHHHHHHHHHHHHH-HHH
Confidence 555555555566666666654422 2222 23332 35677777777777765433 388
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009740 277 ELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKW 348 (527)
Q Consensus 277 ~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw 348 (527)
.+|...+--|..+|..- .+.+ +.-.+.|...|.-+..|++-+..-..+|.+|+++
T Consensus 267 ~~i~~~kp~WkKiWE~E---------L~~V--------~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~ 321 (424)
T PF03915_consen 267 EYIKTEKPIWKKIWESE---------LQKV--------CEEQQFLKLQEDLLSDLKEDLKKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHH---------HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888899999732 1111 1234556777777888888888889999999986
No 58
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.29 E-value=3.9e+02 Score=30.07 Aligned_cols=43 Identities=12% Similarity=0.151 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 009740 185 DTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVN 227 (527)
Q Consensus 185 ~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~e 227 (527)
++|+.+...+..++.+-.....+++.....-.++|..++...+
T Consensus 453 ~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e 495 (581)
T KOG0995|consen 453 STIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIE 495 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666677777777777777655444
No 59
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.98 E-value=5.4e+02 Score=31.66 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009740 185 DTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLE 223 (527)
Q Consensus 185 ~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~ 223 (527)
..|...+..+.+.+++-..-...+.....++.+||.+|.
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666667777788888888763
No 60
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=51.40 E-value=23 Score=26.35 Aligned_cols=25 Identities=28% Similarity=0.532 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHH-hhhHHHHHHH
Q 009740 322 SSMDDQIAKAKEEAL-SRKDILDKVE 346 (527)
Q Consensus 322 ~~~E~eI~~lke~~~-~~k~Il~~ve 346 (527)
..||.||..+...|. .|+||++.|+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIldAie 47 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPILDAIE 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 468999999988774 6899999886
No 61
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.05 E-value=2.2e+02 Score=28.09 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 009740 184 NDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQ 229 (527)
Q Consensus 184 ~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr 229 (527)
++.|..|.....+|+++...+.-++.+|.....+|-..+..|.+++
T Consensus 169 ~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 3468888999999999998888889999988888888888887753
No 62
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.99 E-value=2.3e+02 Score=28.04 Aligned_cols=65 Identities=17% Similarity=0.264 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 33 DAEAEIACLVSALGEHASFSRGK-GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEI 97 (527)
Q Consensus 33 ~~~~El~~L~~eLge~~~~~~~~-~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL 97 (527)
-.+.||.+-.-.-|.....+.++ +.+++.+..++..++++.++|.+-++++..++++.......|
T Consensus 107 lvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erl 172 (290)
T COG4026 107 LVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444445544444344 567788888888888888888888888887777766655554
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.58 E-value=3.1e+02 Score=28.47 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--C-----CCCC--CCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 009740 16 KVERTRKYKADLHQSLADAEAEIACLVSALGEHAS--F-----SRGK--GTLKQQISAIRSI--LEDLRSKKEQRIKEFS 84 (527)
Q Consensus 16 kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~--~-----~~~~--~tL~eql~~l~~~--le~Lrk~K~eR~~ef~ 84 (527)
.++--.-.-..|...|.+.+.-+..+-.++...++ + -.++ ..+..|+..++.. ++.-..-++=|++-+.
T Consensus 69 ~Lely~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~ 148 (325)
T PF08317_consen 69 MLELYQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLE 148 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445566777888888888888887776332 1 1222 4455777776644 4555666788888888
Q ss_pred HHHHHHHHHHHHhcc
Q 009740 85 GIQFQIAQISSEIAG 99 (527)
Q Consensus 85 ~l~~qi~~L~~eL~~ 99 (527)
.++..+..-.+.|..
T Consensus 149 gl~~~L~~~~~~L~~ 163 (325)
T PF08317_consen 149 GLKEGLEENLELLQE 163 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888777777654
No 64
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=50.24 E-value=1.6e+02 Score=30.73 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccC
Q 009740 33 DAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVD 112 (527)
Q Consensus 33 ~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d 112 (527)
....++..+|.+||.+..+ ++.+..+.++.|.+.++ .+...+.... .+. |-+
T Consensus 130 ~~~~~l~~i~~~L~l~~p~--~~i~~~~lf~~i~~ki~---------------------~~L~~lp~~~-~~~---PLl- 181 (318)
T PF10239_consen 130 EVAQELKAICQALGLPKPP--PNITASQLFSKIEAKIE---------------------ELLSKLPPGH-MGK---PLL- 181 (318)
T ss_pred HHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHH---------------------HHHHhcCccc-cCC---CCc-
Confidence 3456888999999987653 34555455555544443 3333332211 111 223
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 113 ECDLTVKKLGELKTHLRELQNEKNLRLQK 141 (527)
Q Consensus 113 ~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~k 141 (527)
...+|.++...|...-+.|..||.-|..-
T Consensus 182 ~~~L~~~Qw~~Le~i~~~L~~EY~~RR~m 210 (318)
T PF10239_consen 182 KKSLTDEQWEKLEKINQALSKEYECRRQM 210 (318)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999883
No 65
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=49.90 E-value=3.3e+02 Score=28.62 Aligned_cols=193 Identities=13% Similarity=0.113 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----C--CCCCHHHH---------HHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFS----R--GKGTLKQQ---------ISAIRSILEDL 72 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~----~--~~~tL~eq---------l~~l~~~le~L 72 (527)
+.+.+|....++.- ++.+...|..+..++....+.|+.|.... . ...+|.+. +..|...+.+|
T Consensus 6 ea~s~Y~erk~~lV--r~~~~~~le~~~~~l~~~L~slnLP~sl~~l~~~~~lP~sl~~~~~~v~~~~g~~~l~~~l~~l 83 (353)
T cd09236 6 LAISIYDDRKDRLV--NESIIDELEELTNRAHSTLRSLNLPGSLQALEKPLGLPPSLLRHAEEIRQEDGLERIRASLDDV 83 (353)
T ss_pred HHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHhCCCcHHHHHhhCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56678887766654 45567888899999999999999985311 1 11233332 22333444444
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 73 RSKK---EQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTV-------KKLGELKTHLRELQNEKNLRLQKV 142 (527)
Q Consensus 73 rk~K---~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~-------~~L~~L~~~L~~Lq~Ek~~R~~kv 142 (527)
.+.+ .+.+.+...+......=|..+... +|. ..+ ...+|. .++..|+..|+.-.. -=..|
T Consensus 84 ~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k--~g~---~~W-tr~~S~~~~~~l~~~~~~~~~~L~~A~~----sD~~v 153 (353)
T cd09236 84 ARLAASDRAILEEAMDILDDEASEDESLRRK--FGT---DRW-TRPDSHEANPKLYTQAAEYEGYLKQAGA----SDELV 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--cCC---CCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHh----hHHHH
Confidence 4443 222223222222222222222221 110 001 112333 344444444442211 12345
Q ss_pred HHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 143 NNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 143 ~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~ 216 (527)
......+......|..+.... ....|+...... + .-....+..|+..+..|..++.+|...+.+|..++.
T Consensus 154 ~~k~~~~~~~l~lL~~~~~~l-~~~~Ps~~~~~~--~-~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~~Lk~k~~ 223 (353)
T cd09236 154 RRKLDEWEDLIQILTGDERDL-ENFVPSSRRPSI--P-PELERHVRALRVSLEELDRLESRRRRKVERARTKAR 223 (353)
T ss_pred HHHHHHHHHHHHHHcCCHHHH-HHhCCCCCCCCC--C-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777776665543 223465322111 1 113467999999999999999999999999987765
No 66
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.71 E-value=1.9e+02 Score=31.08 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHHH
Q 009740 277 ELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGAEEEQ 356 (527)
Q Consensus 277 ~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~e~~ 356 (527)
.+|...-+-+..+|..|.-.--. . +.|- .+..+|.+.++. +..-..+.-|-.+|.+|
T Consensus 60 hV~L~AlTLlda~~~NCg~~~r~-----E----VsSr-~F~~el~al~~~-----~~h~kV~~k~~~lv~eW-------- 116 (462)
T KOG2199|consen 60 HVVLQALTLLDACVANCGKRFRL-----E----VSSR-DFTTELRALIES-----KAHPKVCEKMRDLVKEW-------- 116 (462)
T ss_pred chHHHHHHHHHHHHHhcchHHHH-----H----Hhhh-hHHHHHHHHHhh-----cccHHHHHHHHHHHHHH--------
Confidence 34555556688899999866321 1 2222 255666666553 44555666777788877
Q ss_pred HHHHhcCCccccccCCCChhhhHHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCceEECCccHHHHH
Q 009740 357 WLDDYEKDENRYSAGRGAHKNLKRAEKARILISKLPSVVENLIAKVKAWEAEKRIPFLYDKVPLLSIL 424 (527)
Q Consensus 357 ~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~KlP~l~~~L~~~l~~wE~e~g~~Fl~dG~~ll~~l 424 (527)
-|++-+||+==. |+.|.+.|+ +.|.+|++.|-.--..-
T Consensus 117 -see~K~Dp~lsL---------------------i~~l~~klk--------~~g~~f~~~~~k~~k~a 154 (462)
T KOG2199|consen 117 -SEEFKKDPSLSL---------------------ISALYKKLK--------EEGITFLVAGSKPEKHA 154 (462)
T ss_pred -HHHhccCcchhH---------------------HHHHHHHHH--------HcCCCcccCCCchhHHH
Confidence 345567876311 444444443 46999999987765544
No 67
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=48.98 E-value=1.9e+02 Score=26.05 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhh
Q 009740 179 SKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTS 237 (527)
Q Consensus 179 ~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~ 237 (527)
-.+|++++|..+-..+..|+....-...++. ++.+.++...||...|.....
T Consensus 75 vVgl~~~~i~~i~~~~~tLe~Llemsd~el~-------~~l~~~g~~~EE~rRL~~Al~ 126 (129)
T PF13543_consen 75 VVGLRPESIQAILSKVLTLEALLEMSDEELK-------EILNRCGAREEECRRLCRALS 126 (129)
T ss_pred hcCCCHHHHHHHHHhhcCHHHHHhCCHHHHH-------HHHHHhCCCHHHHHHHHHHHH
Confidence 3689999999997677777766655555444 444558888888888877654
No 68
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=48.09 E-value=3.9e+02 Score=28.93 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 009740 7 QDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHA 49 (527)
Q Consensus 7 ~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~ 49 (527)
.+|+++|++.+.+.... ..+.+.+.+. .+.+..+++...
T Consensus 127 e~k~~~~~~~~~q~esl-le~~~q~da~---~qq~~~ele~~d 165 (446)
T KOG4438|consen 127 EEKMDLYRPFIQQLESL-LELRKQLDAK---YQQALKELERFD 165 (446)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHhhc
Confidence 58999999998876643 3555555544 666777777643
No 69
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.82 E-value=1.6e+02 Score=32.14 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHH
Q 009740 192 GVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYK 271 (527)
Q Consensus 192 ~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK 271 (527)
+.++.-..+|..-+-++..+...-..|=.+--+...+++.|++.+-.+ ..++.+-+.||+||+.+|
T Consensus 404 k~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm--------------dk~LskKeeeverLQ~lk 469 (527)
T PF15066_consen 404 KHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM--------------DKTLSKKEEEVERLQQLK 469 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH--------------HHHhhhhHHHHHHHHHHH
Confidence 333333344444444455555555556666666667788887775433 457888899999999999
Q ss_pred HHh
Q 009740 272 ASK 274 (527)
Q Consensus 272 ~~~ 274 (527)
...
T Consensus 470 gel 472 (527)
T PF15066_consen 470 GEL 472 (527)
T ss_pred HHH
Confidence 763
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.11 E-value=5.9e+02 Score=30.70 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 009740 260 MEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRK 339 (527)
Q Consensus 260 ~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k 339 (527)
+..|++++...|... .++|.|+.+--+.++..|.. +|.. |. ++.+.+|+..+..=-..|+.+-..+|
T Consensus 907 ~dKe~Ek~~~rk~~L-----l~KreE~~ekIr~lG~Lp~d--af~k----y~--~~~~~el~kkL~~~neelk~ys~VNK 973 (1200)
T KOG0964|consen 907 FDKELEKLVRRKHML-----LKKREECCEKIRELGVLPED--AFEK----YQ--DKKSKELMKKLHRCNEELKGYSNVNK 973 (1200)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCchH--HHHH----hc--cCCHHHHHHHHHHHHHHHhhcchhhH
Confidence 345666665555443 34777777777777888753 3333 22 35788888888888888888888888
Q ss_pred HHHHHHHHH
Q 009740 340 DILDKVEKW 348 (527)
Q Consensus 340 ~Il~~vekw 348 (527)
--|+-+..+
T Consensus 974 kAldQf~nf 982 (1200)
T KOG0964|consen 974 KALDQFVNF 982 (1200)
T ss_pred HHHHHHHHH
Confidence 766554443
No 71
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=45.88 E-value=3.2e+02 Score=27.31 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 009740 30 SLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDA 109 (527)
Q Consensus 30 ~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~ 109 (527)
.|+.+-.++..|....+ +...-|..+...++.+++.......++.++..++..+-.+|..-.......-.
T Consensus 11 ~iq~lD~e~~rl~~~~~----------~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 11 AIQKLDLEKDRLEPRIK----------EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444 23355666666777777777777777777777666666666543221100000
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009740 110 QVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLS 157 (527)
Q Consensus 110 ~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg 157 (527)
.. ...-+.+.++.|...++.++.....=-..+..+.+.+..|-..+.
T Consensus 81 kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 81 KL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 233567888888888888888877777777777777766655554
No 72
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=45.41 E-value=6.8e+02 Score=30.91 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 009740 323 SMDDQIAKAKEE 334 (527)
Q Consensus 323 ~~E~eI~~lke~ 334 (527)
..+..|..++..
T Consensus 946 ~~~~~i~~le~~ 957 (1163)
T COG1196 946 ELEREIERLEEE 957 (1163)
T ss_pred HHHHHHHHHHHH
Confidence 444555555544
No 73
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.46 E-value=1e+02 Score=28.66 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009740 114 CDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSI 158 (527)
Q Consensus 114 ~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~ 158 (527)
.++|.+.+..+...+..|+.+...-...+..+..++..|...+-.
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~ 111 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN 111 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 357899999999999999999888888888888888887776653
No 74
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=40.86 E-value=25 Score=32.56 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHhhhhhc
Q 009740 280 FKRQHELEEIYKGVHMDVDSDAARQILISLI 310 (527)
Q Consensus 280 ~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~ 310 (527)
++.|.+|-+||+.|++|.-.|+ +|+=++
T Consensus 3 e~qq~~IIeLW~~C~VsLvHRT---yFfLLF 30 (161)
T PF11995_consen 3 ERQQQEIIELWHACNVSLVHRT---YFFLLF 30 (161)
T ss_pred HHHHHHHHHHHHhcCcchhhhh---hhhhee
Confidence 5678999999999999998875 454444
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.77 E-value=7.9e+02 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 14 RRKVERTRKYKADLHQSLADAEAEIACLVSAL 45 (527)
Q Consensus 14 r~kV~~~~~~k~~l~q~ia~~~~El~~L~~eL 45 (527)
...++............++....++..+-..+
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLL 704 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 76
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.31 E-value=4.3e+02 Score=26.85 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQI 90 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 90 (527)
.-+|+.|+.+...++++.-.+..+..++..+-..+-...- .-..+...+..++..++.....+.+--.++..++.+|
T Consensus 57 ~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~---~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl 133 (312)
T PF00038_consen 57 RELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELA---ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEEL 133 (312)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 4456777777777888877777777777776554433210 0023334455555555555555544444555555544
Q ss_pred HHHHH----HhccCCCCC-CccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCh
Q 009740 91 AQISS----EIAGNGQSI-NSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVN-----NNLSTIHELSLVLSINF 160 (527)
Q Consensus 91 ~~L~~----eL~~~~~~~-~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~-----el~~~I~~L~~~Lg~d~ 160 (527)
.-+-. ++..--... ..+++.++. ..-..|...|..++.+++....+.. -+...+..+....+..-
T Consensus 134 ~fl~~~heeEi~~L~~~~~~~~~~e~~~-----~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 134 EFLKQNHEEEIEELREQIQSSVTVEVDQ-----FRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHHHHHHHHTTSTT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhccccccceeecc-----cccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence 43322 111110000 000111111 1112255556666655554433222 22223333322222110
Q ss_pred hhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009740 161 LETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLE 223 (527)
Q Consensus 161 ~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~ 223 (527)
. .+ .-...-+..+...++.|+.+-..-..+...|-..|..|+..++
T Consensus 209 ~-~~----------------~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 209 E-EL----------------ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp H-HH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cc----------------chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 0 00 0022335556666666666666555666677777777777765
No 77
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.79 E-value=7e+02 Score=29.14 Aligned_cols=36 Identities=8% Similarity=0.207 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 179 SKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNA 214 (527)
Q Consensus 179 ~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~ 214 (527)
+..|+..-...+...+.+.-++-.+-+++++.+...
T Consensus 679 s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 679 SIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888887776666666666655544
No 78
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.64 E-value=5.8e+02 Score=28.19 Aligned_cols=82 Identities=11% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQI 90 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 90 (527)
++|...-......-..+.+.++.+..++..+-..+..-. ..+...-......++.++.+.++-..+...+..++
T Consensus 163 ~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~------~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l 236 (562)
T PHA02562 163 SVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYN------KNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEI 236 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544433344444555566666666666655553211 01111222233445666666666666666666776
Q ss_pred HHHHHHhc
Q 009740 91 AQISSEIA 98 (527)
Q Consensus 91 ~~L~~eL~ 98 (527)
..+-+.|.
T Consensus 237 ~~l~~~i~ 244 (562)
T PHA02562 237 EELTDELL 244 (562)
T ss_pred HHHHHHHH
Confidence 66666663
No 79
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=38.26 E-value=4.7e+02 Score=26.99 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009740 121 LGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLS 157 (527)
Q Consensus 121 L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg 157 (527)
+.++...+..+..+-+.=.+++..+.+.+..+...|-
T Consensus 160 ~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~ 196 (294)
T COG1340 160 LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI 196 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444444444455555544444443
No 80
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=36.68 E-value=4.4e+02 Score=26.18 Aligned_cols=184 Identities=15% Similarity=0.246 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCc--HHHHHHHHHHHHHHHHH
Q 009740 57 TLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLT--VKKLGELKTHLRELQNE 134 (527)
Q Consensus 57 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS--~~~L~~L~~~L~~Lq~E 134 (527)
.|..+|..+...++.|-+.. +++......+..-++.|+....+ ..+| ...+.+....+..+...
T Consensus 33 ~Le~~Lk~l~k~~~~lv~~r----kela~~~~efa~s~~~L~~~E~~----------~~ls~~l~~laev~~ki~~~~~~ 98 (234)
T cd07664 33 NLDQQLRKLHASVESLVCHR----KELSANTAAFAKSAAMLGNSEDH----------TALSRALSQLAEVEEKIDQLHQD 98 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCccc----------chHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444443 66777777777777777765432 1222 34566666666666554
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 135 KNLRLQ-----KVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQ 209 (527)
Q Consensus 135 k~~R~~-----kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~ 209 (527)
-....- .+.+++..|..+-..+. ....-. ....-...+|.+-+..+.+|.. ..+-.+++
T Consensus 99 qa~~d~~~l~e~L~eYiR~i~svK~~f~----~R~k~~----------~~~~~a~~~L~kkr~~~~Kl~~--~~k~dK~~ 162 (234)
T cd07664 99 QAFADFYLFSELLGDYIRLIAAVKGVFD----QRMKCW----------QKWQDAQVTLQKKREAEAKLQY--ANKPDKLQ 162 (234)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHH----HHHHHH----------HHHHHHHHHHHHHHHHHHHHhh--cCchhHHH
Confidence 443332 33333333333332222 111000 0011123344444444444421 11234455
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------H
Q 009740 210 SLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVFK-------R 282 (527)
Q Consensus 210 ~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k-------~ 282 (527)
.+...+..+=.... .-+..|..+ -+....||.|.+.-|..=|+..|.. .
T Consensus 163 ~~~~ev~~~e~~~~---~a~~~fe~I---------------------s~~~k~El~rFe~er~~dfk~~l~~fles~ie~ 218 (234)
T cd07664 163 QAKDEIKEWEAKVQ---QGERDFEQI---------------------SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQT 218 (234)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543322221 112334443 3457788888888777765555543 5
Q ss_pred HHHHHHHHHhcC
Q 009740 283 QHELEEIYKGVH 294 (527)
Q Consensus 283 r~eLeelWd~~~ 294 (527)
..++.++|...+
T Consensus 219 qke~ie~We~f~ 230 (234)
T cd07664 219 QQQLIKYWEAFL 230 (234)
T ss_pred HHHHHHHHHHhh
Confidence 678899998654
No 81
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=34.95 E-value=6.2e+02 Score=27.48 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHH
Q 009740 118 VKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLL 197 (527)
Q Consensus 118 ~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L 197 (527)
...|..|+..|.-|+.-++.-...+...+..|..=...+. ..-..+ +. +.+=..+..-..+|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k----~~~~~~-----------~~---~s~R~y~e~~k~kL 215 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFK----SSSLSA-----------SG---SSNRAYVESSKKKL 215 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhcc-----------CC---CcchHHHHHhHHHH
Confidence 4677788888888888888777755554444443332221 100000 11 11222333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHH
Q 009740 198 KQEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKE 277 (527)
Q Consensus 198 ~~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~ 277 (527)
..+-..-+.++.+|..-|..|- .- -++.++.|+ ..-++.+..++..+..-=. .|.+
T Consensus 216 ~~~Sd~lltkVDDLQD~vE~LR----------kD--V~~RgVRp~-----------~~qLe~v~kdi~~a~keL~-~m~~ 271 (426)
T smart00806 216 SEDSDSLLTKVDDLQDIIEALR----------KD--VAQRGVRPS-----------KKQLETVQKELETARKELK-KMEE 271 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HH--HHHcCCCCC-----------HHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4444444445555544444332 11 233455543 4555666666665544322 3778
Q ss_pred HHHHHHHHHHHHHHh-cCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 009740 278 LVFKRQHELEEIYKG-VHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKW 348 (527)
Q Consensus 278 li~k~r~eLeelWd~-~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw 348 (527)
+|..-+--+..+|.. +..-. .--+.|...|.-+..|++-...-.+.|.+|+.+
T Consensus 272 ~i~~eKP~WkKiWE~EL~~Vc------------------EEqqfL~lQedL~~DL~dDL~ka~eTf~lVeq~ 325 (426)
T smart00806 272 YIDIEKPIWKKIWEAELDKVC------------------EEQQFLTLQEDLIADLKEDLEKAEETFDLVEQC 325 (426)
T ss_pred HHhhcChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887777777777763 11111 123446667777888888888889999999987
No 82
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.74 E-value=3.2e+02 Score=26.60 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 009740 120 KLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINF 160 (527)
Q Consensus 120 ~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~ 160 (527)
.|.-|+.+|.+.+.|.+.+...+..+...+...-..|....
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~ 51 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKE 51 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 46779999999999999999999999999999888887543
No 83
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=34.20 E-value=2.5e+02 Score=32.09 Aligned_cols=202 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 133 NEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLG 212 (527)
Q Consensus 133 ~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~ 212 (527)
.+...+...+...++.+.++....+..+.. ..............-....++.+...+..|.+.+.+-.++++.+.
T Consensus 46 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~-----~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~ 120 (646)
T PRK05771 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREE-----KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELE 120 (646)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccchhh-----hccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH--HHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHH
Q 009740 213 NALIKL--WDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELV-------FKRQ 283 (527)
Q Consensus 213 ~~l~~L--W~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li-------~k~r 283 (527)
..+..| |..+++|.+.-.....+...+ |.++.+..+....+........-..-+..+ .+..
T Consensus 121 ~~~~~l~~~~~ld~~l~~~~~~~~~~~~~----------G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~~~~~ 190 (646)
T PRK05771 121 QEIERLEPWGNFDLDLSLLLGFKYVSVFV----------GTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELS 190 (646)
T ss_pred HHHHHhhhhhcCCCCHHHhCCCCcEEEEE----------EEecchhhhhHHhhccCceEEEEEecCCcEEEEEEEEhhhH
Q ss_pred HHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHhhHHH
Q 009740 284 HELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEK--------WKHGAEEE 355 (527)
Q Consensus 284 ~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vek--------w~~l~~e~ 355 (527)
.++.++++.++++. +.-.. ++ .+.+.+..++.++..++++.+.-+.-+..+.+ |...+..+
T Consensus 191 ~~~~~~l~~~~f~~--------~~~p~-~~--~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 259 (646)
T PRK05771 191 DEVEEELKKLGFER--------LELEE-EG--TPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIE 259 (646)
T ss_pred HHHHHHHHHCCCEE--------ecCCC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 009740 356 QWLDD 360 (527)
Q Consensus 356 ~~Le~ 360 (527)
....+
T Consensus 260 ~~~~~ 264 (646)
T PRK05771 260 LERAE 264 (646)
T ss_pred HHHHH
No 84
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=33.22 E-value=5.1e+02 Score=25.92 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAG 99 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~ 99 (527)
+|-..++.+|...+..++.+...-..++..+...+..+.+.+..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~ 128 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45457788888888888888888777888887777777777644
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=32.40 E-value=8.1e+02 Score=28.05 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 009740 28 HQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSV 107 (527)
Q Consensus 28 ~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~ 107 (527)
..+|..+..|-+.....|.... ..+.+....+...+..|+.+|..-+..+..+..+|..|-..+...+...+
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~------a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~-- 74 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEES------AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP-- 74 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc--
Confidence 3444444444444444333221 23557788889999999999999999999999999999888887653211
Q ss_pred ccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 108 DAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNN 145 (527)
Q Consensus 108 ~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el 145 (527)
...+|... ..|+..+..|+++++.=..++...
T Consensus 75 -----pa~pse~E-~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 75 -----PAGPSEVE-QQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred -----cccchHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455443 345556666666554444433333
No 86
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=32.32 E-value=2.1e+02 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 3 LELEQDCLDIYRRKVERTRKYKADLHQSLADAEAE 37 (527)
Q Consensus 3 ~~le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~E 37 (527)
||+=.|=.++.|+++.+.......+...++..+.+
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556888999988888888887765555543
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.08 E-value=5.6e+02 Score=26.05 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 009740 58 LKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNL 137 (527)
Q Consensus 58 L~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~ 137 (527)
+-..+..-...+.++.+.+..-..++..+..+|..+...+..... +.+=+...|..|+..|..+.....+
T Consensus 29 ~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~----------~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQK----------EIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466677778888888888888888888888888888765432 2345788899999999999999999
Q ss_pred HHHHHHHHHHHHHH------HHHHh-CC-ChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 138 RLQKVNNNLSTIHE------LSLVL-SI-NFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQ 209 (527)
Q Consensus 138 R~~kv~el~~~I~~------L~~~L-g~-d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~ 209 (527)
|.+.+..-+..++. +++++ +- +|...+..|. -+.. -.+-....|..+......|+..+.....+++
T Consensus 99 r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvt-Ai~~-----iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e 172 (265)
T COG3883 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVT-AISV-----IVDADKKILEQQKEDKKSLEEKQAALEDKLE 172 (265)
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHH-HHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877766655542 22222 11 2222221110 0000 0111345566666666777766666666655
Q ss_pred HHHHHHHHH
Q 009740 210 SLGNALIKL 218 (527)
Q Consensus 210 ~l~~~l~~L 218 (527)
.+..-..+|
T Consensus 173 ~l~al~~e~ 181 (265)
T COG3883 173 TLVALQNEL 181 (265)
T ss_pred HHHHHHHHH
Confidence 544444433
No 88
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=32.07 E-value=3.4e+02 Score=23.50 Aligned_cols=101 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------------Chhhhhhccc-CCCCCCc
Q 009740 118 VKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSI---------------------NFLETVNEVH-PSLSDSK 175 (527)
Q Consensus 118 ~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~---------------------d~~~~~~~v~-psl~d~~ 175 (527)
...+..|+..+..|+.....=...+.++...+..|-..-+. +.....-.|- ..+.+.+
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~ 84 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKS 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEec
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 176 NVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKL 218 (527)
Q Consensus 176 ~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~L 218 (527)
-.+....-...++.|...+..|+..-..-..++..+...+..+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 89
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.39 E-value=6.1e+02 Score=26.32 Aligned_cols=83 Identities=12% Similarity=0.116 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--C-----CCCC--CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 009740 17 VERTRKYKADLHQSLADAEAEIACLVSALGEHAS--F-----SRGK--GTLKQQISAIR--SILEDLRSKKEQRIKEFSG 85 (527)
Q Consensus 17 V~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~--~-----~~~~--~tL~eql~~l~--~~le~Lrk~K~eR~~ef~~ 85 (527)
++--.-.-..|.+.|.+.+.-+..+-.+.-..++ + -.++ ..+..|+..++ ..++.-..-++=|++-+..
T Consensus 65 LElY~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~klleg 144 (312)
T smart00787 65 LELYQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEG 144 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445567888999999999999888875322 1 1222 44556666666 4456667778889998888
Q ss_pred HHHHHHHHHHHhcc
Q 009740 86 IQFQIAQISSEIAG 99 (527)
Q Consensus 86 l~~qi~~L~~eL~~ 99 (527)
++..+..-.+.|..
T Consensus 145 Lk~~L~~~~~~l~~ 158 (312)
T smart00787 145 LKEGLDENLEGLKE 158 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766644
No 90
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=30.52 E-value=5.6e+02 Score=25.53 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=42.0
Q ss_pred HHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Q 009740 334 EALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISK-LPSVVENLIAKVKAWEAE 408 (527)
Q Consensus 334 ~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~K-lP~l~~~L~~~l~~wE~e 408 (527)
....|+-|=..+++|+. |+.+.=.-.||+.. + +.++ .+-..++++.-+.. |-..++.|...+..||.+
T Consensus 76 L~e~Rk~IE~~MErFK~-vEkesKtKafSkeG--L--~~~~--k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E 144 (233)
T PF04065_consen 76 LLENRKLIEEQMERFKV-VEKESKTKAFSKEG--L--MAAS--KLDPKEKEKEEARDWLKDSIDELNRQIEQLEAE 144 (233)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcccccchhh--h--hccc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666633 22222233333332 1 1122 33467888888888 999999999999999988
No 91
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.34 E-value=3.8e+02 Score=23.51 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------CCCCC----CCC-------------C
Q 009740 5 LEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALG------------EHASF----SRG-------------K 55 (527)
Q Consensus 5 le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLg------------e~~~~----~~~-------------~ 55 (527)
.-++-++.|+..++........+...+++...=+..|-.--+ ...|. ..+ +
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 345677888888999888888888888777665555544332 11110 011 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIA 98 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 98 (527)
.|+.+-...+...++.|.+..++-.+.+..+..++..+...|.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888889999999999999998888888888888888877664
No 92
>PF13514 AAA_27: AAA domain
Probab=30.18 E-value=1.1e+03 Score=28.90 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQI 90 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 90 (527)
+..+..++++....+.+...++.+......+|..+|.| ..+.....-......+....+.+.....+..........-.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~g~p-~~p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1111)
T PF13514_consen 560 EEARARLARAQARLAAAEAALAALEAAWAALWAAAGLP-LSPAEMRDWLARREAALEAAEELRAARAELEALRARRAAAR 638 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777777778888888843 32211122223334444444444444333222222233333
Q ss_pred HHHHHHhccCCCCCCccccccCC--C-----CCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 009740 91 AQISSEIAGNGQSINSVDAQVDE--C-----DLTVKKLGELKTHLRELQNEKNL-------RLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 91 ~~L~~eL~~~~~~~~~~~~~~d~--~-----dlS~~~L~~L~~~L~~Lq~Ek~~-------R~~kv~el~~~I~~L~~~L 156 (527)
..|...|..... ...+...+.. . .=.......+...+..++.+... -...+..........+..+
T Consensus 639 ~~L~~~l~~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~ 717 (1111)
T PF13514_consen 639 AALAAALAALGP-AEELAALLEEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAEL 717 (1111)
T ss_pred HHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333333322211 0001011100 0 00112333333444444443333 3333444444455555566
Q ss_pred CCChhhhhhcccCCCCCCccccCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 009740 157 SINFLETVNEVHPSLSDSKNVQSKSISNDTIARLT---GVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETP 225 (527)
Q Consensus 157 g~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~---~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p 225 (527)
|++..-....+.. ..+.+..+. ..+..+......-...+..+...+..||..++.+
T Consensus 718 gL~~~~~~~~~~~-------------~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~ 776 (1111)
T PF13514_consen 718 GLPADASPEEALE-------------ALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPD 776 (1111)
T ss_pred CCCCCCCHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 6654321111100 122333333 3344444433344445778889999999998884
No 93
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.09 E-value=8.8e+02 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.317 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCHHH
Q 009740 183 SNDTIARLTGVIHLLKQEKQQRLQKLQSLGN------ALIKLWDLLETPVNE 228 (527)
Q Consensus 183 S~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~------~l~~LW~~L~~p~eE 228 (527)
+.+-|..+-.+...+++.+.+++.++..... .+..+|+.+....+.
T Consensus 7 ~~~~l~~F~~eRa~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ 58 (611)
T KOG2398|consen 7 STKELADFVRERASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEA 58 (611)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHH
Confidence 4556777788888899999999888664443 788899998887764
No 94
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.99 E-value=2.9e+02 Score=28.21 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 009740 259 QMEVEVEHLNEYKASKMKELV 279 (527)
Q Consensus 259 ~~e~Ev~RLe~lK~~~mk~li 279 (527)
.+..-++||..|+.++|.+|+
T Consensus 69 ~~~~~~erl~~lr~shi~el~ 89 (359)
T KOG4398|consen 69 DLRSHYERLANLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999988775
No 95
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.85 E-value=4.2e+02 Score=29.54 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 6 EQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSG 85 (527)
Q Consensus 6 e~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~ 85 (527)
..||-.++++ ++.+.+.|..+...+..+...+..|-++|--.. ..=..|+..+..+|-.|..+......+|..
T Consensus 440 ~~Ec~aL~~r-L~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr------~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 440 YAECRALQKR-LESAEKEKESLEEELKEANQNISRLQDELETTR------RNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456444443 666666777777777777777777766665432 122356666666666666665555444444
Q ss_pred HH
Q 009740 86 IQ 87 (527)
Q Consensus 86 l~ 87 (527)
++
T Consensus 513 LK 514 (518)
T PF10212_consen 513 LK 514 (518)
T ss_pred Hh
Confidence 43
No 96
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.81 E-value=8.4e+02 Score=27.42 Aligned_cols=282 Identities=15% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHH-----
Q 009740 58 LKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQ----- 132 (527)
Q Consensus 58 L~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq----- 132 (527)
+.+++..+...|+.|...-..=...+..++...+.+-..|-...+.-. +..+.-.++|+.+......+.
T Consensus 113 ~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G------~a~~~Le~~L~~ie~~F~~f~~lt~~ 186 (560)
T PF06160_consen 113 IEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG------PAIEELEKQLENIEEEFSEFEELTEN 186 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc------hhHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCH--------HHHHHHHHHH
Q 009740 133 ----------NEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISN--------DTIARLTGVI 194 (527)
Q Consensus 133 ----------~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~--------~~L~~L~~~l 194 (527)
......+..+...+..|=.|+..+...+...+.++...+..... +.+.+.. ..=+.+....
T Consensus 187 GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~-~gy~l~~~~i~~~i~~i~~~l~~~~ 265 (560)
T PF06160_consen 187 GDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE-EGYYLEHLDIEEEIEQIEEQLEEAL 265 (560)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHH
Q 009740 195 HLLKQEKQQRLQK-LQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKAS 273 (527)
Q Consensus 195 ~~L~~~K~~R~~k-i~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~ 273 (527)
..|....-..... ++.+...|..|.+.|.--.+-+..+... +..=-..|..++.+
T Consensus 266 ~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~------------------------~~~l~~~l~~~~~~ 321 (560)
T PF06160_consen 266 ALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKN------------------------LKELYEYLEHAKEQ 321 (560)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------HHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCChhh--------------HHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 009740 274 KMKELVFKRQHELEEIYKGVHMDVDS--------------DAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRK 339 (527)
Q Consensus 274 ~mk~li~k~r~eLeelWd~~~~~~e~--------------~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k 339 (527)
+ ..+..++..+-..-+++.++ ...+..+...+..+.+--+.+.+.++.-...|.+.-....
T Consensus 322 ~-----~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~ 396 (560)
T PF06160_consen 322 N-----KELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQE 396 (560)
T ss_pred H-----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhccchHHHHHHHHHHHH
Q 009740 340 DILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISKLPSVVENLIAKVKA 404 (527)
Q Consensus 340 ~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~KlP~l~~~L~~~l~~ 404 (527)
.+.+.+... |.. |..||..+.++-..+..++..+..
T Consensus 397 ~~~~~l~~L-----------------------~~d------E~~Ar~~l~~~~~~l~~ikR~lek 432 (560)
T PF06160_consen 397 EINESLQSL-----------------------RKD------EKEAREKLQKLKQKLREIKRRLEK 432 (560)
T ss_pred HHHHHHHHH-----------------------HHH------HHHHHHHHHHHHHHHHHHHHHHHH
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.59 E-value=9.5e+02 Score=27.95 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQ 87 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 87 (527)
||-+.+|.+..+.+..-.+|..++...+.++..+-.++ ..++....+-.+.-+.-+-.+..++
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~-----------------~~lr~~~~e~~~~~e~L~~aL~amq 600 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL-----------------QELRKYEKESEKDTEVLMSALSAMQ 600 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 88 FQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 88 ~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~L 156 (527)
++=..|-.-|......--. --.-|.+-+.+|+.++.....+-..|.++...|.++..+|
T Consensus 601 dk~~~LE~sLsaEtriKld----------LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~ 659 (697)
T PF09726_consen 601 DKNQHLENSLSAETRIKLD----------LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVM 659 (697)
T ss_pred HHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 98
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=28.69 E-value=8.9e+02 Score=27.32 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=43.9
Q ss_pred HHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Q 009740 334 EALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISK-LPSVVENLIAKVKAWEAE 408 (527)
Q Consensus 334 ~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~K-lP~l~~~L~~~l~~wE~e 408 (527)
...-|+=|=..+++|+.- +.+.=-..+++- |=|..-.|-..||++.-+.- |--++++|-..+..+|.+
T Consensus 76 L~d~RrlIE~~MErfK~v-Eke~KtKa~Ske------gL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~ 144 (575)
T KOG2150|consen 76 LLDNRRLIEQRMERFKAV-EKEMKTKAFSKE------GLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAE 144 (575)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhhccccchh------hccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666432 222222222322 33445577888999888877 999999999999999983
No 99
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.62 E-value=1.5e+02 Score=28.28 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
.++...+..++..|.++.+.+.+-..++..+..+++.+-..+. --...|..|...+..|+.+.
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~-----------------~~~~~l~~l~~~~~~L~~~~ 132 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS-----------------EKERRLAELEAELAQLEEKI 132 (194)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777776655555555444443333221 13467788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 009740 136 NLRLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 136 ~~R~~kv~el~~~I~~L~~~L 156 (527)
..+...+.+.-..+..+-+++
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 887777777766666654443
No 100
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.58 E-value=1.5e+02 Score=31.62 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 185 DTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDL 221 (527)
Q Consensus 185 ~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~ 221 (527)
+.|..|...+..+...-....+.+..+...|.+||+.
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666665555666677888899999997
No 101
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.53 E-value=8.9e+02 Score=27.29 Aligned_cols=121 Identities=13% Similarity=0.156 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCc------HHHHHHHHHHHHHHHHHHHHHH
Q 009740 66 RSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLT------VKKLGELKTHLRELQNEKNLRL 139 (527)
Q Consensus 66 ~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS------~~~L~~L~~~L~~Lq~Ek~~R~ 139 (527)
+..++++....++|..+...-+..+.+.|..|-..+...-+. ....+.|.+ ...+..|..-|+++.+.++.
T Consensus 611 r~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~-l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K-- 687 (741)
T KOG4460|consen 611 RKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPV-LSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK-- 687 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCc-chhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--
Confidence 345677777888899999999999999998887665432110 001122222 22233333333333333222
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 140 QKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGN 213 (527)
Q Consensus 140 ~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~ 213 (527)
....+-+-...|. .....+++.-+..++..+.+|-.+-....+++.....
T Consensus 688 -----Q~~H~~~v~~al~-------------------K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 688 -----QQQHMEKVLSALP-------------------KPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred -----HHHHHHHHHhhcc-------------------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111110 1235567777888888888888888777777766554
No 102
>PRK10869 recombination and repair protein; Provisional
Probab=28.06 E-value=9e+02 Score=27.17 Aligned_cols=192 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 009740 60 QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRL 139 (527)
Q Consensus 60 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~ 139 (527)
+.+..+...++.++....++.+++.-++-|+..| +.-+|.....++|......|
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei------------------~~~~l~~gE~eeL~~e~~~L-------- 217 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL------------------NEFAPQPGEFEQIDEEYKRL-------- 217 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------HhCCCCCCcHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHHHHhCC-C-------hhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 140 QKVNNNLSTIHELSLVLSI-N-------FLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSL 211 (527)
Q Consensus 140 ~kv~el~~~I~~L~~~Lg~-d-------~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l 211 (527)
.....+...+......|.- + ....+..+. .+..+...+..+.+.-..-.-.++++
T Consensus 218 ~n~e~i~~~~~~~~~~L~~~~~~~~~~~l~~~~~~l~-----------------~~~~~d~~~~~~~~~l~~~~~~l~~~ 280 (553)
T PRK10869 218 ANSGQLLTTSQNALQLLADGEEVNILSQLYSAKQLLS-----------------ELIGMDSKLSGVLDMLEEALIQIQEA 280 (553)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-----------------HHhhhCHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHH
Q 009740 212 GNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASK------MKELVFKRQHE 285 (527)
Q Consensus 212 ~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~------mk~li~k~r~e 285 (527)
...|..+-+.++++++ -++.++.-+..|..||+.. +-.+..+.+.+
T Consensus 281 ~~~l~~~~~~~~~dp~----------------------------~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~e 332 (553)
T PRK10869 281 SDELRHYLDRLDLDPN----------------------------RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEE 332 (553)
T ss_pred HHHHHHHHhhcCCCHH----------------------------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Q ss_pred HHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 009740 286 LEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEK 347 (527)
Q Consensus 286 LeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vek 347 (527)
|.. ..+.++-++.++.++..+++.+.....-+...-+
T Consensus 333 L~~-------------------------L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 333 QQQ-------------------------LDDQEDDLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred HHH-------------------------hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=27.91 E-value=8.1e+02 Score=26.62 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 009740 60 QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRL 139 (527)
Q Consensus 60 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~ 139 (527)
++++.+...++.+.+.-..=.+++..+..+|..+-.+|........ -..++-+-...+|..+...+..|+.++..|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~---~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr 114 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI---ETADDLKKLRKQIADLNARLNALEVQEREQR 114 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666655555555566555555555543221100 0011223356788889999999999986666
Q ss_pred HHHHHHHHHHHHHHHHhCCCh
Q 009740 140 QKVNNNLSTIHELSLVLSINF 160 (527)
Q Consensus 140 ~kv~el~~~I~~L~~~Lg~d~ 160 (527)
..+..++..+ ..+|.++
T Consensus 115 ~~La~~L~A~----~r~g~~p 131 (420)
T COG4942 115 RRLAEQLAAL----QRSGRNP 131 (420)
T ss_pred HHHHHHHHHH----HhccCCC
Confidence 6555555444 4555443
No 104
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.85 E-value=6e+02 Score=28.13 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC---CC-----CCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHAS---FS-----RGK-GTLKQQISAIRSILEDLRSKKEQRI 80 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~---~~-----~~~-~tL~eql~~l~~~le~Lrk~K~eR~ 80 (527)
+...+..+++++...+.+...++...+.+ .++..++.... .. ..+ ..+.+.+..+..++.+++....+--
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALA-KFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777776 34455553211 00 011 2355777888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 009740 81 KEFSGIQFQIAQISSEIAG 99 (527)
Q Consensus 81 ~ef~~l~~qi~~L~~eL~~ 99 (527)
.++.++..+|..+-.+|..
T Consensus 152 ~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888777653
No 105
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=27.59 E-value=5.8e+02 Score=24.84 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHH
Q 009740 123 ELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLKQEKQ 202 (527)
Q Consensus 123 ~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~~~K~ 202 (527)
.+...+..+... .|..+...+...+..+|..+|+++......+.|++.. .+.++.. +++.+...+........
T Consensus 93 ~I~~~ik~~Ee~--~k~~k~~~i~~~~~~~~~~~~v~~~~fe~~~~~~wln----ks~s~kk-~~eei~~~i~~~~~~~~ 165 (215)
T PF07083_consen 93 KIDEQIKEFEEK--EKEEKREKIKEYFEEMAEEYGVDPEPFERIIKPKWLN----KSYSLKK-IEEEIDDQIDKIKQDLE 165 (215)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCChHHHhhhcchHHhh----cCCcHHH-HHHHHHHHHHHHHHHHH
Confidence 344555555432 2334444677778888999998765432112333322 2444445 88888888887766666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH
Q 009740 203 QRLQKLQSLGNALIKLWDLLETPVN 227 (527)
Q Consensus 203 ~R~~ki~~l~~~l~~LW~~L~~p~e 227 (527)
......+..... ..-.++|..
T Consensus 166 ~~~~~~~~i~~~----A~~~~l~~~ 186 (215)
T PF07083_consen 166 EIKAAKQAIEEK----AEEYGLPAD 186 (215)
T ss_pred HHHHHHHHHHHH----HHHcCCCcH
Confidence 555555544444 444777754
No 106
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.91 E-value=1.2e+03 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHHH
Q 009740 391 LPSVVENLIAKVKAWE 406 (527)
Q Consensus 391 lP~l~~~L~~~l~~wE 406 (527)
+-.-++.|...+.+|+
T Consensus 970 l~~~i~~lg~aiee~~ 985 (1179)
T TIGR02168 970 ARRRLKRLENKIKELG 985 (1179)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4444555666666654
No 107
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.88 E-value=1.5e+02 Score=23.64 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTR----KYKADLHQSLADAEAEIACLVSALGEHASFSR--GKGTLKQQISAIRSILEDLRSKK 76 (527)
Q Consensus 10 l~vyr~kV~~~~----~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~--~~~tL~eql~~l~~~le~Lrk~K 76 (527)
.+-..++++... ..|...++.+.....|...+...|....-... .-..+...+..++..+..|++..
T Consensus 5 ~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555544 36777777777777777777776665322110 11455566666666666665543
No 108
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=25.65 E-value=4.3e+02 Score=26.03 Aligned_cols=52 Identities=19% Similarity=0.171 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHH------------------HcCCceEECCccHHHHHHHHH
Q 009740 377 NLKRAEKARILISKLPSVVENLIAKVKAWEA------------------EKRIPFLYDKVPLLSILEEYT 428 (527)
Q Consensus 377 ~LlreEK~Rk~v~KlP~l~~~L~~~l~~wE~------------------e~g~~Fl~dG~~ll~~lee~~ 428 (527)
++-|++..-+.+.|+|+++.++..++..=+. .+|...-...-+|.+||++-+
T Consensus 119 ~~~Rek~Ia~nM~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDprdprF~eml~~kE 188 (217)
T PF10147_consen 119 RLAREKEIAKNMAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPRDPRFQEMLQEKE 188 (217)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCChHHHHHHHHHH
Confidence 5557777777788899999998887765433 256666667788999997543
No 109
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=25.54 E-value=8.5e+02 Score=26.46 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
+|.||.+.=-.-=.=.++...|...+.+|+.|...|....... -.|+.+|..+...+|.+...-.-|.-.-...-.=
T Consensus 197 IEtYR~mALL~LP~Ar~~~~~L~~~E~~L~~l~~~~~~~~~~~---~~LL~~Lt~LAa~vE~~~a~t~~RF~As~AY~~i 273 (420)
T PF11902_consen 197 IETYRMMALLGLPVARELSPELSELEQRLAALTQRMASSEDTD---DELLDELTRLAAEVEALAARTSYRFSASRAYYEI 273 (420)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 3567777544444445678899999999999999999874322 2788999999999999988877777666655544
Q ss_pred HHHHHHHhccCCCCC
Q 009740 90 IAQISSEIAGNGQSI 104 (527)
Q Consensus 90 i~~L~~eL~~~~~~~ 104 (527)
+..=-++|.+.+..+
T Consensus 274 V~~RL~eLrE~~i~g 288 (420)
T PF11902_consen 274 VEQRLAELREERIPG 288 (420)
T ss_pred HHHHHHHhcccccCC
Confidence 444455666666543
No 110
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=24.65 E-value=3.8e+02 Score=21.75 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCC-----ChHHHHHHHHHHHHHHHHHHHh
Q 009740 278 LVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNV-----DLSDLLSSMDDQIAKAKEEALS 337 (527)
Q Consensus 278 li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~-----~~e~lL~~~E~eI~~lke~~~~ 337 (527)
=|+..+.||+-+-+...+|-.. |. .+.-|.. -+...+++++.+|.+||+...+
T Consensus 11 ~IE~~~~eIe~LL~~AkiSl~D------yI-miKRGS~DmPe~l~~~~~~QideeV~~LKe~Ida 68 (79)
T PF10398_consen 11 NIENAQEEIEILLKIAKISLVD------YI-MIKRGSQDMPEHLNMAFLAQIDEEVEKLKEHIDA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHT--HHH------HH-HHHTTSS---TTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHH------HH-HhcccCCcCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999988888642 11 1222322 4578899999999999887643
No 111
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.59 E-value=1.4e+03 Score=28.42 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccc----cchhcccCCChHHHH
Q 009740 187 IARLTGVIHLLK-----QEKQQRLQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSS----VDEVSMLGCLALDVI 257 (527)
Q Consensus 187 L~~L~~~l~~L~-----~~K~~R~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s----~~e~~~~~~LS~~~I 257 (527)
|.+++..+..++ .+|.-.++.|++|+.+|+.+-+---.+.--+..-.+.+...+++ ..-|++.+ +..
T Consensus 969 ~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~----~~~ 1044 (1320)
T PLN03188 969 LKRVQDELEHYRNFYDMGEREVLLEEIQDLRSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPEST----DES 1044 (1320)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhhcccccchhhhccchhhhhhhcCcccccccccccccc----ccc
Confidence 445555555433 35555667788888777765222221111122222222222222 11122211 223
Q ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHh
Q 009740 258 EQMEVEVEHLNEYKASK-MKELVFKRQHELEEIYKG 292 (527)
Q Consensus 258 ~~~e~Ev~RLe~lK~~~-mk~li~k~r~eLeelWd~ 292 (527)
...+.|.+|+.-++++. --.+...+|.+|+. |..
T Consensus 1045 ~e~~l~~er~~w~e~es~wislteelr~eles-~r~ 1079 (1320)
T PLN03188 1045 PEKKLEQERLRWTEAESKWISLAEELRTELDA-SRA 1079 (1320)
T ss_pred hhHHHHHHHHHHHHHhhhheechHHHHHHHHH-HHH
Confidence 34555667766555542 23344677888887 653
No 112
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.67 E-value=1.1e+03 Score=26.66 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 25 ADLHQSLADAEAEIACLVSALGEHASFSRGK-------GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQI 93 (527)
Q Consensus 25 ~~l~q~ia~~~~El~~L~~eLge~~~~~~~~-------~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L 93 (527)
..+-..|++++.+...|..-|.+..-.+... .+|..-+..+...+..|...+..+-+.+..++.+|..-
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~k 306 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEK 306 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344566666666666655555321111111 23334455566666666666666666665555554443
No 113
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=23.05 E-value=8.7e+02 Score=26.87 Aligned_cols=97 Identities=5% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCCCCC-Cccc-cccC-CCCCcHHHHHHHHHHHHHHH
Q 009740 60 QQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQ----ISSEIAGNGQSI-NSVD-AQVD-ECDLTVKKLGELKTHLRELQ 132 (527)
Q Consensus 60 eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~----L~~eL~~~~~~~-~~~~-~~~d-~~dlS~~~L~~L~~~L~~Lq 132 (527)
..+..+...++..+....+....+...+.++.. |+..|-...... ...+ ...+ --.|-.++|+.|+..++...
T Consensus 81 ~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 81 ADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666654444443 333332221100 0000 0000 01455788888998888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 133 NEKNLRLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 133 ~Ek~~R~~kv~el~~~I~~L~~~L 156 (527)
.+-..-...+..-+..+..+-..|
T Consensus 161 ~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 161 GKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664444443333333333333333
No 114
>PHA03418 hypothetical E4 protein; Provisional
Probab=22.87 E-value=1.8e+02 Score=28.65 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 009740 184 NDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPV 226 (527)
Q Consensus 184 ~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~ 226 (527)
..-|..++..+.+++....+. ++.+...|..+|.+|+||+
T Consensus 191 ~~LL~~VA~lL~kWE~~f~qL---V~~I~~DL~dYW~kL~tPQ 230 (230)
T PHA03418 191 HGLLGTVACLLGTWEESFRQL---VEDIQEDLDDYWRKLGIPQ 230 (230)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCCC
Confidence 467888888888888877765 5667789999999999984
No 115
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.75 E-value=4.8e+02 Score=22.15 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHHHHH
Q 009740 119 KKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIHLLK 198 (527)
Q Consensus 119 ~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~~L~ 198 (527)
..+..|+..++.+...+..=.....+....+..|-..=+-..-... |-+.|...+......-=.+.++.+...+..|.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~--VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~ 83 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKL--VGNVLVKQEKEEARTELKERLETIELRIKRLE 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHH--hhhHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009740 199 QEKQQRLQKLQSLGNALIKL 218 (527)
Q Consensus 199 ~~K~~R~~ki~~l~~~l~~L 218 (527)
.....-.+++.++..+|.++
T Consensus 84 ~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 84 RQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 116
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=22.33 E-value=7.6e+02 Score=24.36 Aligned_cols=81 Identities=23% Similarity=0.271 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCCCHHHHHHHHHHHH
Q 009740 117 TVKKLGELKTHL-RELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSISNDTIARLTGVIH 195 (527)
Q Consensus 117 S~~~L~~L~~~L-~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~lS~~~L~~L~~~l~ 195 (527)
..++|++....+ ..+..|+..|...+.++.+.+..++..=... .-.+..-+++.+.....
T Consensus 151 i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~-------------------~e~f~~~v~~Ei~~lk~ 211 (247)
T PF06705_consen 151 ILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG-------------------DEQFQNFVLEEIAALKN 211 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------------hHHHHHHHHHHHHHHHH
Confidence 344555444443 4678999999999999999999887632211 12345557888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009740 196 LLKQEKQQRLQKLQSLGNALI 216 (527)
Q Consensus 196 ~L~~~K~~R~~ki~~l~~~l~ 216 (527)
.|..+...|...=.+....|.
T Consensus 212 ~l~~e~~~R~~~Dd~Iv~aln 232 (247)
T PF06705_consen 212 ALALESQEREQSDDDIVQALN 232 (247)
T ss_pred HHHHHHHHHHhhhhHHHHHHH
Confidence 999999999887444444444
No 117
>PRK05244 Der GTPase activator; Provisional
Probab=22.02 E-value=1.1e+02 Score=29.18 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=42.2
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009740 2 LLELEQ-DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHAS 50 (527)
Q Consensus 2 ~~~le~-ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~ 50 (527)
|..||. +||+++-..++.=+..-+.-.+.+..+...|..||..||...-
T Consensus 100 L~~LEnD~rL~~LLdrLE~Ge~Ls~~dQ~yvD~~LdRie~LM~~LGI~~e 149 (177)
T PRK05244 100 LEKLENDERLNALLDRLEAGETLSAEDQKWVDEKLDRIDELMEKLGISDD 149 (177)
T ss_pred HHHHhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 344554 6999999999998888899999999999999999999998654
No 118
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=21.74 E-value=8.5e+02 Score=28.24 Aligned_cols=136 Identities=18% Similarity=0.273 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEH--ASFS---RGKGTLKQQISAIRSILEDLRSKKEQRIKEFS 84 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~--~~~~---~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 84 (527)
++.++.+++..+...+.|.+.++.++.+|..++-. |.. +... -.+-|.-+-...-...|+.|+.+-..
T Consensus 505 ~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~-g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~------ 577 (722)
T PF05557_consen 505 LNELQKEIEELERENERLRQELEELESELEKLTLQ-GEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENED------ 577 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-T--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHH------
Confidence 45577778888887788888888877777764310 221 1100 12234333333334455555544322
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Q 009740 85 GIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELS-LVLSI 158 (527)
Q Consensus 85 ~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~-~~Lg~ 158 (527)
+...+..+- ++.+...+ ..|. .........+..++..+..+++....-.+.|..-.......| ..||.
T Consensus 578 -L~~~l~~le---~~~~~~~~-~~p~-~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~llGy 646 (722)
T PF05557_consen 578 -LLARLRSLE---EGNSQPVD-AVPT-SSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSLLGY 646 (722)
T ss_dssp -HHHHHHHHT---TTT------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred -HHHHHHhcc---cCCCCCcc-cccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222210 11111111 0111 122344566888999998887655444444444344433333 34573
No 119
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.42 E-value=1.5e+03 Score=27.32 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSAL 45 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eL 45 (527)
+-++..+..+......+...+..+..++..+-..+
T Consensus 687 ~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 721 (1179)
T TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKEL 721 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544433
No 120
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=21.33 E-value=2.5e+02 Score=27.54 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 183 SNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDL 221 (527)
Q Consensus 183 S~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~ 221 (527)
|+.||+.|.+.+..|+..-...-.-|...+..+.+||-.
T Consensus 2 s~etle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv~ 40 (216)
T PF07957_consen 2 SDETLEELKKQVDELQALVKKQSKLISKTGQQVLELQVK 40 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566999999999999999888888899999999999965
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.88 E-value=9.7e+02 Score=25.04 Aligned_cols=149 Identities=17% Similarity=0.221 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 009740 8 DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSA----------LGEHASFSR-GKGTLKQQISAIRSILEDLRSKK 76 (527)
Q Consensus 8 ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~e----------Lge~~~~~~-~~~tL~eql~~l~~~le~Lrk~K 76 (527)
|.|-+..+-++.-...|++.--....++...+.|-.. -|.+.+++. ...+|-+.+...+.+...|..+-
T Consensus 9 eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev 88 (319)
T PF09789_consen 9 EALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEV 88 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655555555443333332 222333322 22556566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCcccccc--CCC-CC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 77 EQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQV--DEC-DL------TVKKLGELKTHLRELQNEKNLRLQKVNNNLS 147 (527)
Q Consensus 77 ~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~--d~~-dl------S~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~ 147 (527)
.+-.+.+.+++.+|.-|...+............+. .+. ++ ...+...|+..++.+-.||.+=...-..|..
T Consensus 89 ~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~ 168 (319)
T PF09789_consen 89 EELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKC 168 (319)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777777666665554322100000000 000 00 1123333333344444555555555556666
Q ss_pred HHHHHHHHh
Q 009740 148 TIHELSLVL 156 (527)
Q Consensus 148 ~I~~L~~~L 156 (527)
.++.|-.+|
T Consensus 169 K~~RLN~EL 177 (319)
T PF09789_consen 169 KAHRLNHEL 177 (319)
T ss_pred HHHHHHHHH
Confidence 666665555
No 122
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.76 E-value=2e+03 Score=28.68 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC-----CCCC----------CCC---CCH----HHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALG----EH-----ASFS----------RGK---GTL----KQQIS 63 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLg----e~-----~~~~----------~~~---~tL----~eql~ 63 (527)
|+.=|.....+.+.+..|-..++++..++........ .. .+.. ..+ .++ -..++
T Consensus 1113 le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~ 1192 (1930)
T KOG0161|consen 1113 LEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLA 1192 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888888887776622111 00 0000 000 111 23477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 64 AIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVN 143 (527)
Q Consensus 64 ~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~ 143 (527)
.+..+++++.+.|...-++=..++.++..++.+++.-..... + .......+..++.+|+..-+.=-..+.
T Consensus 1193 el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~---------~-~e~~~k~~E~~l~elq~k~~~~~~~~~ 1262 (1930)
T KOG0161|consen 1193 ELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKK---------D-LEKKDKKLEAQLSELQLKLDEQERLRN 1262 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---------c-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999875332111 1 111223444555555555555555555
Q ss_pred HHHHHHHHHHHHhCCChhhhhhcccCCCCCCccccCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 144 NNLSTIHELSLVLSINFLETVNEVHPSLSDSKNVQSKSI--SNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDL 221 (527)
Q Consensus 144 el~~~I~~L~~~Lg~d~~~~~~~v~psl~d~~~~~~~~l--S~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~ 221 (527)
++......++++.+- +...+.+... .+. . -.... =..-|+.++..+..-...+......+..+...+..|=+.
T Consensus 1263 ~l~~q~~~l~~E~~~-l~~~lee~e~-~~~--~-~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~ 1337 (1930)
T KOG0161|consen 1263 DLTAKRSRLQNENEE-LSRQLEEAEA-KLS--A-LSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQ 1337 (1930)
T ss_pred HHHHHHHHhhhhHHH-HhhHhHHHHH-HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666551 1111110000 000 0 00000 012233344444444444555555577788888888888
Q ss_pred cCCCHHHHHhH
Q 009740 222 LETPVNEQRKV 232 (527)
Q Consensus 222 L~~p~eEr~~F 232 (527)
|+...+-+...
T Consensus 1338 leee~e~~~~l 1348 (1930)
T KOG0161|consen 1338 LEEEQEAKNEL 1348 (1930)
T ss_pred HHHHHHHHHHH
Confidence 87776655433
No 123
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.73 E-value=1.1e+03 Score=25.62 Aligned_cols=77 Identities=22% Similarity=0.372 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 5 LEQDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFS 84 (527)
Q Consensus 5 le~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~ 84 (527)
+.++ ++-..+++.+....++.|...|++.+.++..|-.+|-...... --+...++.+...++.|..++.+|...+.
T Consensus 43 ~q~e-i~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l---~~~~~~I~~~~~~l~~l~~q~r~qr~~La 118 (420)
T COG4942 43 IQKE-IAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL---KKLRKQIADLNARLNALEVQEREQRRRLA 118 (420)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 3556778888888999999999999999999988887654311 23346677778888888877744444443
Q ss_pred H
Q 009740 85 G 85 (527)
Q Consensus 85 ~ 85 (527)
.
T Consensus 119 ~ 119 (420)
T COG4942 119 E 119 (420)
T ss_pred H
Confidence 3
No 124
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=20.66 E-value=5.5e+02 Score=22.07 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 17 VERTRKYKADLHQSLADAEAEIACLVSALGEHASFS------RGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQI 90 (527)
Q Consensus 17 V~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~------~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi 90 (527)
++.....+..++..|+........++..+|..+... .....+......+...+++++..-..=..-+.....-+
T Consensus 39 l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~ 118 (143)
T PF05130_consen 39 LEELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEELQELNERNQQLLEQALEFV 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666778889999999999999999999999872110 01122333344555555555554444444444444555
Q ss_pred HHHHHHhccC
Q 009740 91 AQISSEIAGN 100 (527)
Q Consensus 91 ~~L~~eL~~~ 100 (527)
+.+.+.+.+.
T Consensus 119 ~~~l~~l~~~ 128 (143)
T PF05130_consen 119 QQLLNLLQPA 128 (143)
T ss_dssp HHHHHHCCH-
T ss_pred HHHHHHHhcC
Confidence 5555555443
No 125
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=20.54 E-value=1.2e+02 Score=28.67 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=42.6
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 009740 2 LLELEQ-DCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASF 51 (527)
Q Consensus 2 ~~~le~-ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~ 51 (527)
|.+||. +||+++-..++.=...-+.-.+.+..+..-|..||..||.....
T Consensus 101 L~~LEnD~rL~~LLdrle~Ge~Ls~~dQ~yvD~~LdRi~~Lm~~LGi~~dd 151 (169)
T PF04220_consen 101 LEMLENDERLNQLLDRLEEGETLSAEDQKYVDEKLDRIEELMEELGIEDDD 151 (169)
T ss_pred HHHhhccHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 344554 59999999999988888999999999999999999999986543
No 126
>PHA03419 E4 protein; Provisional
Probab=20.47 E-value=2.5e+02 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q 009740 182 ISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLETPV 226 (527)
Q Consensus 182 lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~~p~ 226 (527)
....-|..++..+.+.+....+. ++.+...|...|.+|+||+
T Consensus 159 ~~e~LL~~vA~~L~kWE~~f~qL---V~~I~~DL~~YW~kL~tPQ 200 (200)
T PHA03419 159 DQEGLLPGVALRLQKWEQQFDQL---VDNIVVDLRDYWQRLRTPQ 200 (200)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCC
Confidence 34567888888888888877765 5667789999999999984
No 127
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.38 E-value=1.3e+03 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009740 316 DLSDLLSSMDDQIAKAKEEALSRKDILDKV 345 (527)
Q Consensus 316 ~~e~lL~~~E~eI~~lke~~~~~k~Il~~v 345 (527)
+.++-+..++.++..++..|..-...+...
T Consensus 339 ~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~ 368 (557)
T COG0497 339 NSEESLEALEKEVKKLKAELLEAAEALSAI 368 (557)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334557777888887777766555544443
No 128
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=20.26 E-value=8e+02 Score=23.78 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 24 KADLHQSLADAEAEIACLVSALGEHASFSRGK-GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQ 87 (527)
Q Consensus 24 k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~-~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~ 87 (527)
|.++.+-+.-.+.++..+-. |-... ..+ ..+.+-++.|..+|+.|......|..++..++
T Consensus 134 k~e~EqLL~YK~~ql~~~~~--~~~~~--~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 134 KREFEQLLDYKERQLRELEE--GRSKS--GKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhhhc--cCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555566655544 22211 122 56678899999999999998888888887664
Done!