Query 009740
Match_columns 527
No_of_seqs 256 out of 514
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrx_A Protein regulator of cy 100.0 3.7E-39 1.3E-43 285.2 14.4 126 329-461 3-130 (130)
2 1i84_S Smooth muscle myosin he 79.8 12 0.00041 44.2 13.0 75 13-97 869-943 (1184)
3 1go4_E MAD1 (mitotic arrest de 71.4 4.7 0.00016 33.4 4.6 41 178-218 5-45 (100)
4 1i84_S Smooth muscle myosin he 68.6 4.9 0.00017 47.5 5.8 11 321-331 1153-1163(1184)
5 3ghg_A Fibrinogen alpha chain; 68.2 5 0.00017 42.5 5.0 92 56-154 53-145 (562)
6 1go4_E MAD1 (mitotic arrest de 67.3 21 0.0007 29.6 7.6 46 116-163 9-54 (100)
7 3gp4_A Transcriptional regulat 60.9 82 0.0028 27.3 11.7 111 215-353 5-115 (142)
8 1deq_A Fibrinogen (alpha chain 58.6 46 0.0016 33.9 9.8 81 56-142 56-136 (390)
9 1a92_A Delta antigen; leucine 45.5 49 0.0017 23.5 5.3 35 422-458 4-38 (50)
10 3okq_A BUD site selection prot 40.3 1.9E+02 0.0064 25.3 17.8 87 254-367 53-139 (141)
11 4emc_C Monopolin complex subun 38.2 7.4 0.00025 28.8 0.2 30 444-473 27-56 (70)
12 3ghg_A Fibrinogen alpha chain; 34.7 1.3E+02 0.0044 31.9 8.9 35 254-289 116-150 (562)
13 3cuq_A Vacuolar-sorting protei 33.0 75 0.0025 30.3 6.4 43 7-50 13-56 (234)
14 1l8d_A DNA double-strand break 32.3 2E+02 0.0069 23.3 9.8 88 10-98 12-102 (112)
15 2lw9_A Unconventionnal myosin- 31.8 78 0.0027 22.5 4.6 38 254-291 5-42 (51)
16 2jo8_A Serine/threonine-protei 31.3 45 0.0015 24.0 3.4 26 321-346 23-49 (51)
17 3hnw_A Uncharacterized protein 31.2 2.3E+02 0.0078 24.5 8.8 43 57-99 93-135 (138)
18 3na7_A HP0958; flagellar bioge 31.0 3.4E+02 0.012 25.6 18.6 158 10-192 48-218 (256)
19 3ol1_A Vimentin; structural ge 30.8 2E+02 0.0067 24.2 8.1 34 9-42 21-54 (119)
20 1zke_A Hypothetical protein HP 28.4 2.1E+02 0.0072 22.3 7.5 52 279-337 14-70 (83)
21 1p9i_A Cortexillin I/GCN4 hybr 27.6 95 0.0033 19.2 3.9 28 188-215 2-29 (31)
22 3ra3_B P2F; coiled coil domain 27.1 78 0.0027 19.1 3.4 21 21-41 6-26 (28)
23 3vkg_A Dynein heavy chain, cyt 27.0 3.1E+02 0.011 35.9 12.2 94 56-152 2010-2103(3245)
24 4etr_A Putative uncharacterize 26.7 2.4E+02 0.0082 24.4 8.4 49 2-50 19-72 (153)
25 2w6b_A RHO guanine nucleotide 25.0 1.8E+02 0.0061 21.1 5.6 20 377-396 32-52 (56)
26 1m1j_C Fibrinogen gamma chain; 24.9 5.7E+02 0.02 26.1 12.4 42 7-48 26-67 (409)
27 2lw1_A ABC transporter ATP-bin 24.1 1.5E+02 0.005 23.5 5.8 49 24-72 24-75 (89)
28 1nfn_A Apolipoprotein E3; lipi 24.1 2.8E+02 0.0097 25.1 8.6 73 11-88 88-160 (191)
29 3swy_A Cyclic nucleotide-gated 23.6 1.9E+02 0.0066 20.2 5.6 38 56-93 1-38 (46)
30 2yy0_A C-MYC-binding protein; 23.4 1.5E+02 0.005 21.4 5.1 31 17-47 21-51 (53)
31 2yy0_A C-MYC-binding protein; 23.0 1.7E+02 0.0057 21.1 5.3 31 68-98 20-50 (53)
32 3v1a_A Computational design, M 22.5 88 0.003 22.2 3.5 42 56-99 4-45 (48)
33 1yf2_A Type I restriction-modi 22.4 86 0.0029 31.2 5.1 41 225-279 377-417 (425)
34 1yzm_A FYVE-finger-containing 22.0 1.1E+02 0.0039 22.0 4.1 41 56-98 5-45 (51)
35 1deq_A Fibrinogen (alpha chain 21.1 5.2E+02 0.018 26.2 10.2 17 120-136 135-151 (390)
36 3mq7_A Bone marrow stromal ant 20.9 3.8E+02 0.013 22.6 10.4 93 3-101 17-112 (121)
37 2cci_F Cell division control p 20.9 44 0.0015 21.1 1.5 19 471-489 8-28 (30)
38 3ol1_A Vimentin; structural ge 20.6 2.9E+02 0.0098 23.1 7.2 42 182-223 17-58 (119)
39 1ykh_B RNA polymerase II holoe 20.0 4.1E+02 0.014 22.6 11.2 62 85-156 68-129 (132)
No 1
>3nrx_A Protein regulator of cytokinesis 1; spectrin fold, microtubule binding domain, protein binding; 1.75A {Homo sapiens} PDB: 3nry_A
Probab=100.00 E-value=3.7e-39 Score=285.23 Aligned_cols=126 Identities=29% Similarity=0.480 Sum_probs=116.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccccccCCCChhhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Q 009740 329 AKAKEEALSRKDILDKVEKWKHGAEEEQWLDDYEKDENRYSAGRGAHKNLKRAEKARILISK-LPSVVENLIAKVKAWEA 407 (527)
Q Consensus 329 ~~lke~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~RG~h~~LlreEK~Rk~v~K-lP~l~~~L~~~l~~wE~ 407 (527)
++|+++|.++++||++|++|..+|.+...||+|++|||||+ +||| +|++|||+|++|+| ||+|++.|+++|.+||.
T Consensus 3 ~rLk~~y~~~k~Ile~vekweelw~~~~eLE~~~~D~sR~~-~Rgg--~LlreEK~Rk~i~k~lP~l~~~L~~~i~~wE~ 79 (130)
T 3nrx_A 3 AALKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRFT-NRGG--NLLKEEKQRAKLQKMLPKLEEELKARIELWEQ 79 (130)
T ss_dssp CHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCChhhhh-ccch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999 8999 99999999999999 99999999999999999
Q ss_pred HcCCceEECCccHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 009740 408 EKRIPFLYDKVPLLSIL-EEYTAQCQKREEEKRRCREQKRLQEQFAAEQEAIYGS 461 (527)
Q Consensus 408 e~g~~Fl~dG~~ll~~l-ee~~~~~~eKe~ek~~~r~~kk~~~q~~~e~e~~~gs 461 (527)
++|.||+|||++|+++| ++|+.+|++||+||++ |++||. +++|+||+|||
T Consensus 80 e~g~~Flv~G~~~le~l~eqw~~~r~~KE~eK~~-R~~kk~---~~~e~e~~~gs 130 (130)
T 3nrx_A 80 EHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQE-RQLKNK---KQTETEMLYGS 130 (130)
T ss_dssp HHTSCCEETTEEHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHCC
T ss_pred HcCCeeeEcCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHhccCC
Confidence 99999999999999999 5799999999999999 999987 45899999998
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.76 E-value=12 Score=44.19 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 13 YRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQ 92 (527)
Q Consensus 13 yr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~ 92 (527)
.+..+.........+...+..+..++..+-..+.. ....+..+...++.+...+.+-..++.++..++..
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~----------e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA----------ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666655542 23445555555555555555555555555555555
Q ss_pred HHHHh
Q 009740 93 ISSEI 97 (527)
Q Consensus 93 L~~eL 97 (527)
+-..+
T Consensus 939 ~ee~l 943 (1184)
T 1i84_S 939 EEERS 943 (1184)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 44443
No 3
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.39 E-value=4.7 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=33.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 178 QSKSISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKL 218 (527)
Q Consensus 178 ~~~~lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~L 218 (527)
+++++|.+.+..|...+..|+.+...-.+.+..|-.+|...
T Consensus 5 ~~~~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 5 QSFLFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999998888899988888754
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.56 E-value=4.9 Score=47.54 Aligned_cols=11 Identities=9% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 009740 321 LSSMDDQIAKA 331 (527)
Q Consensus 321 L~~~E~eI~~l 331 (527)
++.+..+|..+
T Consensus 1153 le~L~~~Ieel 1163 (1184)
T 1i84_S 1153 LEALKTELEDT 1163 (1184)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 5
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.17 E-value=5 Score=42.49 Aligned_cols=92 Identities=12% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHH-HHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLG-ELKTHLRELQNE 134 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~-~L~~~L~~Lq~E 134 (527)
++|.++...+...|++|+..+++-.+-..++..-+..+.+.|....... .+.+-...++. +|+.+++.|+.+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~-------~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSA-------NNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHH-------HHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhh-------hccchhHHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999998888888888888888888886532210 01111223333 677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009740 135 KNLRLQKVNNNLSTIHELSL 154 (527)
Q Consensus 135 k~~R~~kv~el~~~I~~L~~ 154 (527)
.+.-+..+..|.+.|.++..
T Consensus 126 VdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66665555555555444433
No 6
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=67.27 E-value=21 Score=29.57 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Q 009740 116 LTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLET 163 (527)
Q Consensus 116 lS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~ 163 (527)
+|.+.+..++..|+.|+.|...=.+.+..+-..+-..+ |..||...
T Consensus 9 ~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd~~~~ 54 (100)
T 1go4_E 9 FSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGDYDQS 54 (100)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSCCCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccCCc
Confidence 48899999999999999998877776667666665553 55566543
No 7
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=60.94 E-value=82 Score=27.25 Aligned_cols=111 Identities=9% Similarity=0.091 Sum_probs=59.0
Q ss_pred HHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Q 009740 215 LIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVH 294 (527)
Q Consensus 215 l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~ 294 (527)
|.++-..+|++..-..-+... ..+.|....-.+...+|.+.|..+.. ++ .+..++
T Consensus 5 I~e~A~~~gvs~~tLR~Ye~~-GLl~p~~r~~~g~R~Y~~~dl~~l~~-------I~-----------------~lr~~G 59 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYERI-GLIPPIHRNESGVRKFGAEDLRWILF-------TR-----------------QMRRAG 59 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH-TSSCCCCBCTTSCBCBCHHHHHHHHH-------HH-----------------HHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC-CCCCCCcCCCCCCeeeCHHHHHHHHH-------HH-----------------HHHHcC
Confidence 456667778887766555444 33444232233344567666555432 11 123466
Q ss_pred CChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhH
Q 009740 295 MDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKEEALSRKDILDKVEKWKHGAE 353 (527)
Q Consensus 295 ~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke~~~~~k~Il~~vekw~~l~~ 353 (527)
++.++- ..++.....|+....+..+.++.++..+.+....-..+.+.++.....|+
T Consensus 60 ~sL~eI---k~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 60 LSIEAL---IDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp CCHHHH---HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 23333333333344556666666666666666666666666666555554
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=58.57 E-value=46 Score=33.87 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
++|.++...+...++.|+.....-.+...++-.-+..+.+.+........ +....=.+-.++|+.++..|+...
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~------dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKAN------NNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhc------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888877777777777777777777766433111 111122344456666666666555
Q ss_pred HHHHHHH
Q 009740 136 NLRLQKV 142 (527)
Q Consensus 136 ~~R~~kv 142 (527)
..-+..+
T Consensus 130 ~~q~~~i 136 (390)
T 1deq_A 130 IEQVQRI 136 (390)
T ss_pred HHHhHHH
Confidence 4444433
No 9
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=45.51 E-value=49 Score=23.45 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009740 422 SILEEYTAQCQKREEEKRRCREQKRLQEQFAAEQEAI 458 (527)
Q Consensus 422 ~~lee~~~~~~eKe~ek~~~r~~kk~~~q~~~e~e~~ 458 (527)
++|++|...|...|+-.+..|.-||.-..| |.|..
T Consensus 4 e~LeqWv~~Rkk~eeler~lrk~kk~iKkl--EdeNP 38 (50)
T 1a92_A 4 DILEQWVSGRKKLEELERDLRKLKKKIKKL--EEDNP 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccCC
Confidence 678999999888877766666655554443 66654
No 10
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.28 E-value=1.9e+02 Score=25.26 Aligned_cols=87 Identities=14% Similarity=0.245 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCCChHHHHHHHHHHHHHHHH
Q 009740 254 LDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNVDLSDLLSSMDDQIAKAKE 333 (527)
Q Consensus 254 ~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~~~e~lL~~~E~eI~~lke 333 (527)
...++.+..++..+..-=. .|+.+|...+--+..+|.. +-+.+ +.--+.|...|.-|..|++
T Consensus 53 ~~ql~~v~kdi~~a~~eL~-~m~~~i~~ekP~WKKiWE~---------EL~~V--------ceEQqfl~~QedL~~DL~e 114 (141)
T 3okq_A 53 KKKLETVSKDLENAQADVL-KLQEFIDTEKPHWKKTWEA---------ELDKV--------CEEQQFLTLQEELILDLKE 114 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchhHHHHHH---------HHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 5777778877777765433 3888888877777778862 11111 1234557777888888999
Q ss_pred HHHhhhHHHHHHHHHHHhhHHHHHHHHhcCCccc
Q 009740 334 EALSRKDILDKVEKWKHGAEEEQWLDDYEKDENR 367 (527)
Q Consensus 334 ~~~~~k~Il~~vekw~~l~~e~~~Le~~~~D~~R 367 (527)
-+..-.+.|.+|++. | ++-.++|+|
T Consensus 115 DL~ka~etf~lVeq~---~------~eq~k~~~~ 139 (141)
T 3okq_A 115 DLGKALETFDLIKLC---C------EEQEKNPSR 139 (141)
T ss_dssp HHHHHHHHHHHHHHH---C---------------
T ss_pred HHHHHHHHHHHHHHH---H------HHHHhcccC
Confidence 999999999999977 2 455688876
No 11
>4emc_C Monopolin complex subunit MAM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae}
Probab=38.24 E-value=7.4 Score=28.81 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCCCCCCC
Q 009740 444 QKRLQEQFAAEQEAIYGSRPSIKKPLCQST 473 (527)
Q Consensus 444 ~kk~~~q~~~e~e~~~gs~p~~~~~~~~~~ 473 (527)
.||.-.-|.+-.|..|||.|-++||-+.+.
T Consensus 27 a~kilndlsatsenpf~ssp~tkk~~s~~~ 56 (70)
T 4emc_C 27 ARKVLNDLSATSENPFSSSPNTKKIKSKGK 56 (70)
T ss_dssp HHHHHHHHHCCCCSTTC-------------
T ss_pred HHHHHhhhcccccCCCCCCCCccCcccCCC
Confidence 445545566779999999999988766444
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=34.66 E-value=1.3e+02 Score=31.94 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 009740 254 LDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEI 289 (527)
Q Consensus 254 ~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeel 289 (527)
...|..++.+|+.-- -....|+..|.+.+.+|..|
T Consensus 116 RRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 116 RSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445666666666544 33344566666666666554
No 13
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=33.01 E-value=75 Score=30.27 Aligned_cols=43 Identities=14% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 009740 7 QDCLDIYRRKVER-TRKYKADLHQSLADAEAEIACLVSALGEHAS 50 (527)
Q Consensus 7 ~ecl~vyr~kV~~-~~~~k~~l~q~ia~~~~El~~L~~eLge~~~ 50 (527)
++-|+|++..+++ |.++|..|.+.= ..+.+++.+|..||.+|.
T Consensus 13 ~~Ql~~F~~~L~~FA~kH~~eI~~dp-~fR~~F~~mc~siGVDPl 56 (234)
T 3cuq_A 13 SKQLDMFKTNLEEFASKHKQEIRKNP-EFRVQFQDMCATIGVDPL 56 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHHcCCCcc
No 14
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.26 E-value=2e+02 Score=23.30 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGE-HASFSRGKGT--LKQQISAIRSILEDLRSKKEQRIKEFSGI 86 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge-~~~~~~~~~t--L~eql~~l~~~le~Lrk~K~eR~~ef~~l 86 (527)
++-|+.+++.....+..+...|..+...+..+-.. |. .|.-+.+-.+ .......+...+..+......-..++..+
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~-g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA-KGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777666655221 33 2332211111 11334555666666665555555555556
Q ss_pred HHHHHHHHHHhc
Q 009740 87 QFQIAQISSEIA 98 (527)
Q Consensus 87 ~~qi~~L~~eL~ 98 (527)
..++..+-..+.
T Consensus 91 ~~~~~~l~~~~~ 102 (112)
T 1l8d_A 91 ERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 15
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=31.83 E-value=78 Score=22.47 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 009740 254 LDVIEQMEVEVEHLNEYKASKMKELVFKRQHELEEIYK 291 (527)
Q Consensus 254 ~~~I~~~e~Ev~RLe~lK~~~mk~li~k~r~eLeelWd 291 (527)
.+-|-.++.|+++|+..|...+..|-...+.+|..+-|
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD 42 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRD 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 34577899999999999999999998888888877665
No 16
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=31.31 E-value=45 Score=24.03 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHH-HhhhHHHHHHH
Q 009740 321 LSSMDDQIAKAKEEA-LSRKDILDKVE 346 (527)
Q Consensus 321 L~~~E~eI~~lke~~-~~~k~Il~~ve 346 (527)
=..||.||..+...| ..|+||++.|+
T Consensus 23 d~~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 23 DPMMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 356899999998776 56899999986
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.15 E-value=2.3e+02 Score=24.50 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009740 57 TLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAG 99 (527)
Q Consensus 57 tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~ 99 (527)
.|+..+......++.+.++..+..+++..++.++.++-+++..
T Consensus 93 ~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 93 DLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777888888888888888888888888888888777654
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.97 E-value=3.4e+02 Score=25.55 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQ 89 (527)
Q Consensus 10 l~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~q 89 (527)
+...+..++.......++-..|+...+.+...-..|+.-... ..+.++...++.+..+....-.++.++..+
T Consensus 48 ~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~--------kE~~aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 48 ILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE--------RELRSLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhc---
Q 009740 90 IAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVLSINFLETVNE--- 166 (527)
Q Consensus 90 i~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~Lg~d~~~~~~~--- 166 (527)
+..+-..+.. ....+..++..+...+.+.+.....+..-...+..=...|.-.....+-.
T Consensus 120 ie~~~~~l~~-----------------~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Ye 182 (256)
T 3na7_A 120 IKRKSEKQED-----------------LKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYE 182 (256)
T ss_dssp HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred ----------ccCCCCCCccccCCCCCHHHHHHHHH
Q 009740 167 ----------VHPSLSDSKNVQSKSISNDTIARLTG 192 (527)
Q Consensus 167 ----------v~psl~d~~~~~~~~lS~~~L~~L~~ 192 (527)
|.|--...+++-.+.|++..+..+..
T Consensus 183 rir~~~~g~avv~v~~~~C~GC~~~lppq~~~~i~~ 218 (256)
T 3na7_A 183 RIRRWAKNTSIVTIKKQACGGCFIRLNDKIYTEVLT 218 (256)
T ss_dssp HHHHHHGGGSEEECBTTBCTTTCCBCCHHHHHHHHH
T ss_pred HHHHhCCCceEEEeeCCccCCCCeeeCHHHHHHHHC
No 19
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.77 E-value=2e+02 Score=24.16 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 9 CLDIYRRKVERTRKYKADLHQSLADAEAEIACLV 42 (527)
Q Consensus 9 cl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~ 42 (527)
.|+-+|+.|+.+...+++|.-.|..++..+..+-
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk 54 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 54 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777776666665555443
No 20
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=28.43 E-value=2.1e+02 Score=22.26 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCC-----ChHHHHHHHHHHHHHHHHHHHh
Q 009740 279 VFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNV-----DLSDLLSSMDDQIAKAKEEALS 337 (527)
Q Consensus 279 i~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~-----~~e~lL~~~E~eI~~lke~~~~ 337 (527)
|+..+.||+-+-+...+|-..- + .+.-|.. -....|++++.+|.+||+...+
T Consensus 14 IE~~q~eI~~lL~~AkiSl~Dy-----I--miKRGS~DmPe~L~~~~~~QideeV~~LKe~Ida 70 (83)
T 1zke_A 14 IEDSQNEIEMLLKLANLSLGDF-----I--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 70 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHH-----H--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH-----h--heeccCccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999996421 1 1222322 3467899999999999987644
No 21
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=27.60 E-value=95 Score=19.18 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 188 ARLTGVIHLLKQEKQQRLQKLQSLGNAL 215 (527)
Q Consensus 188 ~~L~~~l~~L~~~K~~R~~ki~~l~~~l 215 (527)
+.|...+..|+.+-++...+++++..++
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888887777777776654
No 22
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.14 E-value=78 Score=19.13 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 009740 21 RKYKADLHQSLADAEAEIACL 41 (527)
Q Consensus 21 ~~~k~~l~q~ia~~~~El~~L 41 (527)
...-++|.|.|+.++-|++.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 344578899999999888876
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.00 E-value=3.1e+02 Score=35.92 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEK 135 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek 135 (527)
.|+++.++.+...++..+.+..+-..++.++..+++.+-+.......... ..-++......+|+.=...+..|..|+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~---~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE---QIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 89999999999999988888888888888888888888777654211000 001122456677888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009740 136 NLRLQKVNNNLSTIHEL 152 (527)
Q Consensus 136 ~~R~~kv~el~~~I~~L 152 (527)
.+=.+.+..+...+..|
T Consensus 2087 ~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2087 GRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc
Confidence 75555555554444433
No 24
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=26.75 E-value=2.4e+02 Score=24.37 Aligned_cols=49 Identities=27% Similarity=0.308 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHHHHHhCCCCC
Q 009740 2 LLELEQDCLDIYRRKVERTR--KYKADLHQSL---ADAEAEIACLVSALGEHAS 50 (527)
Q Consensus 2 ~~~le~ecl~vyr~kV~~~~--~~k~~l~q~i---a~~~~El~~L~~eLge~~~ 50 (527)
|++++..|.+.|++..+.+. ..|..+..-. .....+|+.....+|..|.
T Consensus 19 Li~~~~D~~~gY~~aae~~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~ 72 (153)
T 4etr_A 19 LLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPK 72 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 68899999999999988654 4555544433 4445788888889998664
No 25
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=25.01 E-value=1.8e+02 Score=21.13 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHhcc-chHHHH
Q 009740 377 NLKRAEKARILISK-LPSVVE 396 (527)
Q Consensus 377 ~LlreEK~Rk~v~K-lP~l~~ 396 (527)
.|-.|-|+|+++.+ +|+++.
T Consensus 32 ~lEeEqkARk~LE~~vrk~~k 52 (56)
T 2w6b_A 32 SLEEEQRARKDLEKLVRKVLK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999998 888854
No 26
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=24.87 E-value=5.7e+02 Score=26.14 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009740 7 QDCLDIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEH 48 (527)
Q Consensus 7 ~ecl~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~ 48 (527)
+.-|.-|++.|+..-..=..+++.|+.+..++..|...|...
T Consensus 26 ~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 26 ADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888877777888999999999998888777764
No 27
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.08 E-value=1.5e+02 Score=23.49 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CCC--CCHHHHHHHHHHHHHHH
Q 009740 24 KADLHQSLADAEAEIACLVSALGEHASFS-RGK--GTLKQQISAIRSILEDL 72 (527)
Q Consensus 24 k~~l~q~ia~~~~El~~L~~eLge~~~~~-~~~--~tL~eql~~l~~~le~L 72 (527)
=+.|-..|+.++.++..|-..|+.|.+.. +++ ..+..++..+...|+.+
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999988653 221 23344445555444433
No 28
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=24.07 E-value=2.8e+02 Score=25.13 Aligned_cols=73 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 11 DIYRRKVERTRKYKADLHQSLADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQRIKEFSGIQF 88 (527)
Q Consensus 11 ~vyr~kV~~~~~~k~~l~q~ia~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~ 88 (527)
++..+........|.++.+.+.+++..|.-...+|....-. .+.+.-..+.|.+++|+.+-..++++|.....
T Consensus 88 e~~~~l~~~~e~lr~~l~kdlEelr~kL~P~~eEL~~~l~~-----~~Eelr~~L~Py~eelr~kl~~~~eeLr~~l~ 160 (191)
T 1nfn_A 88 ETRARLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQ-----STEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (191)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhH
No 29
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.65 E-value=1.9e+02 Score=20.25 Aligned_cols=38 Identities=21% Similarity=0.469 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQI 93 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L 93 (527)
+.+.+....+...++.|+.+...-+.+|...+..+.+=
T Consensus 1 ~dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 1 GALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668888999999999999999999999888877653
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.45 E-value=1.5e+02 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 009740 17 VERTRKYKADLHQSLADAEAEIACLVSALGE 47 (527)
Q Consensus 17 V~~~~~~k~~l~q~ia~~~~El~~L~~eLge 47 (527)
|+......+.|.+.++.+.++++.|++.|.-
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677777888888999999999999988763
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.05 E-value=1.7e+02 Score=21.09 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009740 68 ILEDLRSKKEQRIKEFSGIQFQIAQISSEIA 98 (527)
Q Consensus 68 ~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 98 (527)
.+|.|+.+..+-..++..+..+++.+|+.|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555556667777777777664
No 32
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=22.45 E-value=88 Score=22.22 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIAG 99 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~~ 99 (527)
-||++|...|+..+...++. .|..++..+..-+..|-.++..
T Consensus 4 dPL~EQ~~~I~~~I~qAk~~--rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 4 SPLAQQIKNIHSFIHQAKAA--GRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp SHHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999987654 5888888888888888877753
No 33
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=22.42 E-value=86 Score=31.16 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=33.6
Q ss_pred CHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009740 225 PVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELV 279 (527)
Q Consensus 225 p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li 279 (527)
|.+||+.|......+ ...|+.++.+++.|+++|...|.+++
T Consensus 377 pl~eQ~~I~~~l~~l--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 417 (425)
T 1yf2_A 377 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 417 (425)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567899888876433 56888999999999999999998875
No 34
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=21.96 E-value=1.1e+02 Score=21.96 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009740 56 GTLKQQISAIRSILEDLRSKKEQRIKEFSGIQFQIAQISSEIA 98 (527)
Q Consensus 56 ~tL~eql~~l~~~le~Lrk~K~eR~~ef~~l~~qi~~L~~eL~ 98 (527)
-||.+|...|+..+.+.++. .|+.++..+..-+..|-.++.
T Consensus 5 dPL~EQ~~~I~~~I~qAk~~--~r~DEV~~Le~NLrEL~~ei~ 45 (51)
T 1yzm_A 5 SPLLQQIHNITSFIRQAKAA--GRMDEVRTLQENLRQLQDEYD 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHH
Confidence 48889999999999887654 477777777777777766653
No 35
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.07 E-value=5.2e+02 Score=26.23 Aligned_cols=17 Identities=12% Similarity=0.311 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 009740 120 KLGELKTHLRELQNEKN 136 (527)
Q Consensus 120 ~L~~L~~~L~~Lq~Ek~ 136 (527)
.|..|+..|..+..+..
T Consensus 135 ~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMK 151 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666555443
No 36
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.94 E-value=3.8e+02 Score=22.57 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 009740 3 LELEQDCLDIYRRKVERTRKYKADLHQSL---ADAEAEIACLVSALGEHASFSRGKGTLKQQISAIRSILEDLRSKKEQR 79 (527)
Q Consensus 3 ~~le~ecl~vyr~kV~~~~~~k~~l~q~i---a~~~~El~~L~~eLge~~~~~~~~~tL~eql~~l~~~le~Lrk~K~eR 79 (527)
|..++||-+|-+-.-.+...-..-|++.- +.|-.-...|...|-..... + ..++..+...+..|.....+-
T Consensus 17 LrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq----~--q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 17 LRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ----G--QKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHH
Confidence 46788998775544444444444444433 55556666666665442211 0 245666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhccCC
Q 009740 80 IKEFSGIQFQIAQISSEIAGNG 101 (527)
Q Consensus 80 ~~ef~~l~~qi~~L~~eL~~~~ 101 (527)
..++..+..+.+.+...|....
T Consensus 91 ~ae~erlr~~~~~~~~r~~~~~ 112 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVRIADKK 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhhchhhhhHhhhcc
Confidence 7777777777777777776554
No 37
>2cci_F Cell division control protein 6 homolog; complex (transferase/cell division), protein kinases, cell C recruitment, substrate recognition; HET: TPO ATP; 2.7A {Homo sapiens}
Probab=20.94 E-value=44 Score=21.08 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=12.2
Q ss_pred CCCCCCC--CCCCCcCCcccC
Q 009740 471 QSTSTNT--MAGTPVGRRFTT 489 (527)
Q Consensus 471 ~~~~~~~--~~~~~~~~~~~~ 489 (527)
+|...|| -+.|+-+||++.
T Consensus 8 q~kkengpp~~~t~kgrrLvF 28 (30)
T 2cci_F 8 QGKKENGPPHSHTLKGRRLVF 28 (30)
T ss_pred cccccCCCCcccccccceeec
Confidence 5555444 457888888764
No 38
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.57 E-value=2.9e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009740 182 ISNDTIARLTGVIHLLKQEKQQRLQKLQSLGNALIKLWDLLE 223 (527)
Q Consensus 182 lS~~~L~~L~~~l~~L~~~K~~R~~ki~~l~~~l~~LW~~L~ 223 (527)
+=...|..|+..+..+..++..-.-.+..+...+..+=.+..
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345789999999999999988888778777777776655543
No 39
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.04 E-value=4.1e+02 Score=22.63 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009740 85 GIQFQIAQISSEIAGNGQSINSVDAQVDECDLTVKKLGELKTHLRELQNEKNLRLQKVNNNLSTIHELSLVL 156 (527)
Q Consensus 85 ~l~~qi~~L~~eL~~~~~~~~~~~~~~d~~dlS~~~L~~L~~~L~~Lq~Ek~~R~~kv~el~~~I~~L~~~L 156 (527)
.-..+|..|.+.|=+... ...--.++|.+|+.++.....++..-...-..++..|..+...+
T Consensus 68 ~k~kqIe~LIdsLP~~~~----------see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 68 LKTRQINKLIDSLPGVDV----------SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHSTTTTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666632111 11234678889999999999888888888888888888776543
Done!