Query 009740
Match_columns 527
No_of_seqs 256 out of 514
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 11:57:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009740.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009740hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yf2a2 d.287.1.2 (A:221-425) 39.1 17 0.0012 30.0 5.1 41 225-279 157-197 (205)
2 d1ydxa2 d.287.1.2 (A:194-374) 33.0 27 0.002 28.4 5.5 41 225-279 137-177 (181)
3 d1ydxa1 d.287.1.2 (A:1-193) Bi 31.1 32 0.0023 28.1 5.6 41 226-280 143-183 (193)
4 d1zkea1 a.30.6.1 (A:1-79) Hypo 30.6 87 0.0063 22.3 7.9 54 277-337 10-68 (79)
5 d1gm5a1 a.24.21.1 (A:7-105) Re 30.0 8.5 0.00062 29.5 1.3 22 380-401 71-92 (99)
6 d1yf2a1 d.287.1.2 (A:1-220) Bi 25.9 48 0.0035 27.7 6.0 42 225-280 167-208 (220)
7 d1vcsa1 a.47.2.1 (A:8-96) Vesi 20.3 80 0.0059 23.3 5.4 67 10-76 11-83 (89)
8 d2o8pa1 a.118.7.1 (A:8-227) 14 15.6 1.8E+02 0.013 25.0 7.5 84 201-292 16-101 (220)
9 d1zkea1 a.30.6.1 (A:1-79) Hypo 14.3 2E+02 0.015 20.3 6.9 58 205-271 9-66 (79)
10 d2q37a1 a.288.1.1 (A:6-160) OH 13.9 2.7E+02 0.02 22.3 7.9 104 341-447 30-144 (155)
No 1
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=39.07 E-value=17 Score=29.98 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=31.9
Q ss_pred CHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009740 225 PVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELV 279 (527)
Q Consensus 225 p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li 279 (527)
|.+||+.|......+ ...|+.++..++.|+++|...|..++
T Consensus 157 ~~~eQ~~I~~~l~~i--------------d~~i~~~~~~~~~l~~~k~~Ll~~l~ 197 (205)
T d1yf2a2 157 PLEEQKQIAKILSSV--------------DKSIELKKQKKEKLQRMKKKIMELLL 197 (205)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788887776422 56788899999999999998888775
No 2
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=32.97 E-value=27 Score=28.37 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=33.5
Q ss_pred CHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 009740 225 PVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELV 279 (527)
Q Consensus 225 p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li 279 (527)
|.++++.|.+....+ .+.|+..+.+++.|+++|...|+++.
T Consensus 137 ~l~eQ~~I~~~l~~~--------------d~~i~~~~~~i~~l~~lk~~Ll~~lF 177 (181)
T d1ydxa2 137 SFQLQRKAGKIVFLL--------------DQKLDQYKKELSSLTVIRDTLLKKLF 177 (181)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888886543 57899999999999999999888763
No 3
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=31.13 E-value=32 Score=28.14 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009740 226 VNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVF 280 (527)
Q Consensus 226 ~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~ 280 (527)
.+||+.+......+ ...|+.++.+++.|+++|...|++++.
T Consensus 143 ~~eQ~~I~~~l~~l--------------d~~i~~~~~~i~~l~~~~~~ll~~lft 183 (193)
T d1ydxa1 143 KNEQHAIANTLSVF--------------DERLENLASLIEINRKLRDEYAHKLFS 183 (193)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56788888776433 578999999999999999999999863
No 4
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=30.62 E-value=87 Score=22.32 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHhhhhhccCCCC-----ChHHHHHHHHHHHHHHHHHHHh
Q 009740 277 ELVFKRQHELEEIYKGVHMDVDSDAARQILISLIDSGNV-----DLSDLLSSMDDQIAKAKEEALS 337 (527)
Q Consensus 277 ~li~k~r~eLeelWd~~~~~~e~~~~~~~~~~~~~s~~~-----~~e~lL~~~E~eI~~lke~~~~ 337 (527)
.=|+..|.+|+-+-+..-+|-... + .|.-|.. -+...|++++.||.+||+...+
T Consensus 10 ~~IE~~q~eI~~lL~~AkiS~vDy-----I--mIKRGS~DmPe~l~~~~l~qid~ev~kLK~~Ida 68 (79)
T d1zkea1 10 ADIEDSQNEIEMLLKLANLSLGDF-----I--EIKRGSMDMPKGVNEAFFTQLSEEVERLKELINA 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHH-----H--HHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHh-----h--eeecCcccCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 346889999999999999886421 1 1222322 3477899999999999987654
No 5
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=30.03 E-value=8.5 Score=29.50 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.6
Q ss_pred HHHHHHHHhccchHHHHHHHHH
Q 009740 380 RAEKARILISKLPSVVENLIAK 401 (527)
Q Consensus 380 reEK~Rk~v~KlP~l~~~L~~~ 401 (527)
.+|++++||++.|.|++.++..
T Consensus 71 p~eR~~kRvk~~~gMIerfR~~ 92 (99)
T d1gm5a1 71 PEARKRYRIQKSLEMIEKLRSW 92 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccHHHHHHHHHH
Confidence 6899999999999999988764
No 6
>d1yf2a1 d.287.1.2 (A:1-220) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=25.86 E-value=48 Score=27.67 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=33.7
Q ss_pred CHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 009740 225 PVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKELVF 280 (527)
Q Consensus 225 p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~li~ 280 (527)
|.++|+.|......+ .+.++..+..++.|+++|...|..++.
T Consensus 167 p~~eQ~~I~~~l~~i--------------~~~i~~~~~~i~~L~~~r~~ll~~l~t 208 (220)
T d1yf2a1 167 PLEEQKQIAKILTKI--------------DEGIEIIEKSINKLERIKKGLMHKLLT 208 (220)
T ss_dssp CHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567888888776533 568888999999999999998888874
No 7
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.29 E-value=80 Score=23.29 Aligned_cols=67 Identities=10% Similarity=0.156 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 009740 10 LDIYRRKVERTRK----YKADLHQSLADAEAEIACLVSALGEHA--SFSRGKGTLKQQISAIRSILEDLRSKK 76 (527)
Q Consensus 10 l~vyr~kV~~~~~----~k~~l~q~ia~~~~El~~L~~eLge~~--~~~~~~~tL~eql~~l~~~le~Lrk~K 76 (527)
.+=+.++++.+.. .|...+..|.....|...|...|.... .++..-.++.-.+..|+..|+.|++..
T Consensus 11 ~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~el 83 (89)
T d1vcsa1 11 TAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDF 83 (89)
T ss_dssp HHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566665443 477888889999999999998888642 222122566677888888888777654
No 8
>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}
Probab=15.58 E-value=1.8e+02 Score=24.97 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHHHHhHHHH
Q 009740 201 KQQRLQKLQSLGNALIKLWDLL--ETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYKASKMKEL 278 (527)
Q Consensus 201 K~~R~~ki~~l~~~l~~LW~~L--~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK~~~mk~l 278 (527)
...|-...-+...++..+|... +.+.+||..|.-.+.|+-.+ .--|-.+|...+.-- .=...+.+.+.++
T Consensus 16 qa~ryddm~~~mK~~v~~~~~~n~eLt~eERnLLsvayKn~i~~-------~R~s~R~i~~ie~k~-~~~~~~~~~~~~y 87 (220)
T d2o8pa1 16 WGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISD-------YRTMTSQVLQEQTKQ-LNNDELVKICSEY 87 (220)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHS-CSCHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhhcccCccCCHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHhh-ccchhHHHHHHHH
Confidence 3445555556677888888754 68899999998776554211 111334444433211 1123445556777
Q ss_pred HHHHHHHHHHHHHh
Q 009740 279 VFKRQHELEEIYKG 292 (527)
Q Consensus 279 i~k~r~eLeelWd~ 292 (527)
+.+...+|..+|+.
T Consensus 88 ~~~i~~el~~~c~~ 101 (220)
T d2o8pa1 88 VFSLRKDIKAFLQS 101 (220)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888887763
No 9
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=14.32 E-value=2e+02 Score=20.30 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHhHHHhhhccccccchhcccCCChHHHHHHHHHHHHHHHHHH
Q 009740 205 LQKLQSLGNALIKLWDLLETPVNEQRKVDHVTSLVSSSVDEVSMLGCLALDVIEQMEVEVEHLNEYK 271 (527)
Q Consensus 205 ~~ki~~l~~~l~~LW~~L~~p~eEr~~F~~~~~~i~~s~~e~~~~~~LS~~~I~~~e~Ev~RLe~lK 271 (527)
++.+++.+..|.-|-+.-.++... |...-.|.- +-|..|+...+.+...||.+|.+.-
T Consensus 9 l~~IE~~q~eI~~lL~~AkiS~vD---yImIKRGS~------DmPe~l~~~~l~qid~ev~kLK~~I 66 (79)
T d1zkea1 9 LADIEDSQNEIEMLLKLANLSLGD---FIEIKRGSM------DMPKGVNEAFFTQLSEEVERLKELI 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHH---HHHHHTTSS------CCCTTCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhH---hheeecCcc------cCccccCHHHHHHHHHHHHHHHHHH
Confidence 455888889999999999998543 333333221 2377888999999999999887653
No 10
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.95 E-value=2.7e+02 Score=22.29 Aligned_cols=104 Identities=12% Similarity=0.172 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHhcCCccccccCC------CChhhhHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCce
Q 009740 341 ILDKVEKWKHGAEEEQWLDDYEKDENRYSAGR------GAHKNLKRAEKARILISK-LPSVVENLIAKVKAWEAEKRIPF 413 (527)
Q Consensus 341 Il~~vekw~~l~~e~~~Le~~~~D~~R~~~~R------G~h~~LlreEK~Rk~v~K-lP~l~~~L~~~l~~wE~e~g~~F 413 (527)
++..+..+...+.+..|++--.--|.= - +| |........|... -+.. -|...+.|...=.+|++.+|-||
T Consensus 30 L~~a~~~~~~~~~~~~~l~~l~aHP~L-g-~~~~~~~~~~lt~~S~~EQs~-al~~~~~~~~~~l~~lN~~Y~~kFGfpF 106 (155)
T d2q37a1 30 IYTARDIWFNQVNVTDWLEAFSAHPQI-G-NTPSPSINSDFARRSVSEQST-AFATTSASALQELAEWNVLYKKKFGFIF 106 (155)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTSCCT-T-SCCC-------------TTHH-HHTSCCHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHhcCccc-c-ccccccccchhhHHhHHHHHh-hhccCCHHHHHHHHHHHHHHHHHcCCee
Confidence 333344444445566777777676642 1 22 1111223334433 3777 88888999999999999999999
Q ss_pred EE--CCccHHHHHHHHH-HHHHhHHHHHHHH-HHHHHH
Q 009740 414 LY--DKVPLLSILEEYT-AQCQKREEEKRRC-REQKRL 447 (527)
Q Consensus 414 l~--dG~~ll~~lee~~-~~~~eKe~ek~~~-r~~kk~ 447 (527)
.| .|..--+||.... .+....+.|...- .+++|+
T Consensus 107 Ii~v~g~s~~eIL~~l~~Rl~n~~~~E~~~a~~Ev~kI 144 (155)
T d2q37a1 107 IICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKI 144 (155)
T ss_dssp CCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 87 8888888886433 3344555554432 244443
Done!