BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009741
(527 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
I + ++ A+ L + G+SDPY + G K+ + + G+ P+W E F+F +
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76 IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
I V + D D KS V LG I+ V + VWY LD + SG
Sbjct: 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
+ LHI
Sbjct: 139 IRLHI 143
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23 AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
AKNL+ + NG SDPY + K+ + + S P W E F F + E +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
+ V I+DWD+ ++ +GS+ + SE Q V W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23 AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
AKNL+ + NG SDPY + K+ + + S P W E F F + E +
Sbjct: 40 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
+ V I+DWD+ ++ +GS+ + SE Q V W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
++++++L A +L+ A+ +G SDP+ ++ G+++ + V + P W + F F + ++
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75 QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
+ VT++D D LG V + + S +GQ
Sbjct: 74 VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
+++ L++AK L A+ DPY +TC ++ + S++ G P W E F F+V E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75 QIIVTIYDWDIIWKSTVLGSVIVTVE 100
++ I+D D+ + +G + +E
Sbjct: 72 ELKAKIFDKDVGTEDDAVGEATIPLE 97
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23 AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
AKNLI + NG SDPY + K+ + + + P W E F F + + +
Sbjct: 26 AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 85
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
+ V I+DWD ++ +GS+ V E + WY L
Sbjct: 86 LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 123
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
+L AKNL ++ G SDPY I + + P + E F+F V +++
Sbjct: 156 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 215
Query: 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVW 109
VQ++VT+ D+D I K+ +G V V S G W
Sbjct: 216 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 253
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 20 LLAAKNLIGANLNGTSDPY--AIITCGSEKRFSSMV-PGSRYPMWGEEFNFSV--DELPV 74
++ A L ++ GTSDPY + +K+F + V + P++ E+F F V EL
Sbjct: 25 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84
Query: 75 Q-IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS-------GQVCLHIK 124
+ +++ +YD+D K ++G V + + G W L S G +C ++
Sbjct: 85 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLR 144
Query: 125 TI 126
+
Sbjct: 145 YV 146
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23 AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
AKNLI + NG SDPY + K+ + + + P W E F F + + +
Sbjct: 25 AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 84
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
+ V I+DWD ++ +GS+ V E + WY L
Sbjct: 85 LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 122
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 23 AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
AKNLI + NG SDPY + K+ + + + P W E F F + + +
Sbjct: 27 AKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 86
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
+ V I+DWD ++ GS+ V E + WY L
Sbjct: 87 LSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKL 124
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
+L AKNL ++ G SDPY I + + P + E F+F V +++
Sbjct: 24 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 83
Query: 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVW 109
VQ++VT+ D+D I K+ +G V V S G W
Sbjct: 84 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 121
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
+L AKNL ++ G SDPY I + + P + E F+F V +++
Sbjct: 23 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 82
Query: 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVW 109
VQ++VT+ D+D I K+ +G V V S G W
Sbjct: 83 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 120
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
+L AKNL ++ G SDPY I + + P + E F+F V +++
Sbjct: 31 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 90
Query: 73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
VQ++VT+ D+D I K+ +G V V S G
Sbjct: 91 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG 122
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 23 AKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVD--ELPVQ 75
A+NLI + NG SDPY + + K+ + V + P+W E F F++ ++ +
Sbjct: 29 ARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERR 88
Query: 76 IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
+ V ++DWD ++ +G++ V SE V WY L
Sbjct: 89 LSVEVWDWDRTSRNDFMGAMSFGV-SELLKAPVDGWYKL 126
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
+ + ++ A L NG S+PY I+ GS+ + + + P W F + +L
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 76 II-VTIYDWDIIWKSTVLGSVIVTV-------ESEGQTGAVWYTLDSPSGQV 119
++ +T++D D LG + V ES+G + P+G+V
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEV 500
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA-IITCGSEKRFSSMVPGSRY----PMW 61
+P NS I + ++ A+NL ++ GTSDPY + +KR ++ P++
Sbjct: 12 NPSANS---IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIF 68
Query: 62 GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES 101
E F F + ++ II+T+ D D + ++ V+G + ++ +S
Sbjct: 69 NESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS 111
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 18 LELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGE 63
+ +L A+NL+ + NG SDP+ + KR + V S P W +
Sbjct: 22 IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81
Query: 64 EF---NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
+ S+++L + + VT++D+D + LG V++ + S WY L
Sbjct: 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPL 136
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 20 LLAAKNLIGANLNGTSDPY--AIITCGSEKRFSSMV-PGSRYPMWGEEFNFSV--DELPV 74
++ A L ++ GTSDPY + +K+F + V + P++ E+F F V EL
Sbjct: 48 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 107
Query: 75 Q-IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
+ +++ +YD+D K ++G V + + G W L S
Sbjct: 108 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 20 LLAAKNLIGANLNGTSDPY--AIITCGSEKRFSSMV-PGSRYPMWGEEFNFSV--DELPV 74
++ A L ++ GTSDPY + +K+F + V + P++ E+F F V EL
Sbjct: 23 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 82
Query: 75 Q-IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
+ +++ +YD+D K ++G V + + G W L S
Sbjct: 83 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 125
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 20 LLAAKNLIGANLNGTSDPY--AIITCGSEKRFSSMV-PGSRYPMWGEEFNFSV--DELPV 74
++ A L ++ GTSDPY + +K+F + V + P++ E+F F V EL
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99
Query: 75 Q-IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
+ +++ +YD+D K ++G V + + G W L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 20 LLAAKNLIGANLNGTSDPY--AIITCGSEKRFSSMV-PGSRYPMWGEEFNFSV--DELPV 74
++ A L ++ GTSDPY + +K+F + V + P++ E+F F V EL
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99
Query: 75 Q-IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
+ +++ +YD+D K ++G V + + G W L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
>pdb|2CJT|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|C Chain C, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJT|D Chain D, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-Domains As Versatile Protein-
Protein Interaction Modules
Length = 131
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 36 DPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSV 95
+ Y + + K + V GS+ P W ++F F ++ L + + V +++ +IW T++G+V
Sbjct: 24 NTYVTLKVQNVKSTTIAVRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTV 81
Query: 96 IV---TVESEGQTG-AVWYTLDSPS 116
+ T+ + G W TLDS +
Sbjct: 82 WIPLRTIRQSNEEGPGEWLTLDSQA 106
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 15 LIKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMV-----PGSRYPMWGEEFNF 67
++++++++ +L ++ G SDPY ++ E R ++V + P W EEF F
Sbjct: 22 ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 68 SVDELPVQIIVTIYDWDIIWKSTVLGSVIV 97
V+ +++ ++D + + + LG V V
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDV 111
>pdb|2CJS|A Chain A, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
pdb|2CJS|B Chain B, Structural Basis For A Munc13-1 Dimeric - Munc13-1 - Rim
Heterodimer Switch: C2-domains As Versatile Protein-
Protein Interaction Modules
Length = 167
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 53 VPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTG-AV 108
V GS+ P W ++F F ++ L + + V +++ +IW T++G+V + T+ + G
Sbjct: 50 VRGSQ-PSWEQDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGE 107
Query: 109 WYTLDS 114
W TLDS
Sbjct: 108 WLTLDS 113
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF------SSMVPGSRYPMWGEEF 65
++ ++++ ++A L ++ G SDPY +T + + S P W EE
Sbjct: 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 66 NFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV 99
F V +++ ++D + + + LG V V +
Sbjct: 78 LFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF------SSMVPGSRYPMWG 62
+ +++++++A L ++ G SDPY +T + + S P W
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 63 EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV 99
EE F V +I+ ++D + + + LG V V +
Sbjct: 63 EEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY---PMWGEEFNFSVDEL 72
+ ++++ A+ L + +GTSDP+ I +K+ R P W E F F +
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF--EGF 85
Query: 73 PVQIIV------TIYDWDIIWKSTVLGSVIVTVESEG--QTGAVWYTLDSPSG 117
P + +V + D+D ++ +G V + + Q W L PSG
Sbjct: 86 PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDL-KPSG 137
>pdb|2FSE|B Chain B, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
pdb|2FSE|D Chain D, Crystallographic Structure Of A Rheumatoid Arthritis Mhc
Susceptibility Allele, Hla-Dr1 (Drb10101), Complexed
With The Immunodominant Determinant Of Human Type Ii
Collagen
Length = 187
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 23/102 (22%)
Query: 249 GVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLXXXXXXXXXXXLRAHSSSIG 308
V LG PD A +WN L + +R A + + H+ +G
Sbjct: 46 AVTELGRPD-------AEYWNSQKDLLEQRRAAVDTYCR---------------HNYGVG 83
Query: 309 GSRRQAKIVEETVT-KPEKRQPFIKEEVLVGIYNDVFPCTAE 349
S + VE TVT P K QP +LV +D +P E
Sbjct: 84 ESFTVQRRVEPTVTVYPTKTQPLQHHNLLVCSVSDFYPGNIE 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,385,699
Number of Sequences: 62578
Number of extensions: 614853
Number of successful extensions: 1092
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 32
length of query: 527
length of database: 14,973,337
effective HSP length: 103
effective length of query: 424
effective length of database: 8,527,803
effective search space: 3615788472
effective search space used: 3615788472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)